Psyllid ID: psy7076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290
Protein Sequence
MKGSARAVANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISIQKYLI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEcEEEcccccEEEEEEccEEEEEccccccccccccccccccEEEccccccccccccccccccEEEEEEEEccEEEEEEccEEEEEEcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccEEEEEEEccccEEEEEEccccccccEEEEccccEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccEcccccEEEEEEEEccccccEEEEEcccEEEcccccEEEcccccccccccEEEEEEcccccccccccccccEEEEEEEccccEEEEccccEEEEEHHHEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccEcccccEEEEEEEcccccEEEEEcccccEEEEEEcccccEEEccccccccccccc
Coil and Loop (DISEMBL)
MKGSARAVANswgdnawdnapaadtwtastdptgvseyRRYRAIYEFVsrngdelsfqpgdiimvpvkqnaepgwlagelrgqtgwfpesyvepcdetgevvpeyyiaaypydstepgdltfnqDEVIYVTKkendwwtgtigdrtglfpsnyvvpyeaqtpaaavdptpatpvvkdtptksegvtrtssvsggsrsgtpdfssftaaqagtpkgkkpeiatvlapytatsseqlsLSRGQLIMIRKKTttgwwegelqakgkkrqvgwfpaSYVKvmggggisIQKYLI
Flexible Loop (DISEMBL)
MKGSARAVANSwgdnawdnapaadtwtastdptgvseYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKkendwwtgtIGDRTGLFPSNYVVPYEAQTpaaavdptpatpvvkdtptksegvtrtssvsggsrsgtpdfSSFTaaqagtpkgkkpeIATVLApytatsseqlslsrgqLIMIRKKTttgwwegelqakgkkrqvgwFPASYvkvmggggisiqkyli
Low Complexity Region (SEG)
MKGSARAVANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQtpaaavdptpatpvvkdtptkSEgvtrtssvsggsrsgtPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISIQKYLI
Disordered region (IsUnstruct)
***********WGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA***************************************************************VLAPY*********LSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISIQKY**
Disordered Region (DISOPRED)
****************************************YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY**************YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIG**TGLF*****************************************************************************YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV***************
Disordered Region (DISEMBL)
*********NSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATP*************************TPDFSSFTA**********PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISIQKYLI
Disordered Region (DISPRO)
***********************************SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA********************************************************KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGSARAVANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISIQKYLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	290	2.2.26 [Sep-21-2011]
Q9NZM3	1697	Intersectin-2 OS=Homo sap	no	N/A	0.686	0.117	0.409	5e-46
Q15811	1721	Intersectin-1 OS=Homo sap	no	N/A	0.682	0.115	0.420	8e-46
Q9Z0R4	1714	Intersectin-1 OS=Mus musc	no	N/A	0.682	0.115	0.416	1e-45
O42287	1270	Intersectin-1 OS=Xenopus	N/A	N/A	0.668	0.152	0.393	3e-45
Q9WVE9	1217	Intersectin-1 OS=Rattus n	no	N/A	0.682	0.162	0.409	2e-44
Q9Z0R6	1659	Intersectin-2 OS=Mus musc	no	N/A	0.679	0.118	0.383	5e-43
Q91X43	789	SH3 domain-containing pro	no	N/A	0.686	0.252	0.288	4e-16
O94875	1100	Sorbin and SH3 domain-con	no	N/A	0.724	0.190	0.274	1e-13
O35413	1196	Sorbin and SH3 domain-con	no	N/A	0.724	0.175	0.266	3e-13
Q5HYK7	790	SH3 domain-containing pro	no	N/A	0.637	0.234	0.232	7e-13

>sp|Q9NZM3|ITSN2_HUMAN Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3

 Score =  184 bits (468), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/266 (40%), Positives = 139/266 (52%), Gaps = 67/266 (25%)

Query: 35   VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE- 93
            V E  + +A+  + ++  + L+F   DII V  +Q     W  GE+ G  GWFP+SYV+ 
Sbjct: 897  VVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE---NWWFGEVHGGRGWFPKSYVKI 953

Query: 94   -PCDETGEVVPEY-------------------YIAAYPYDSTEPGDLTFNQDEVIYVTKK 133
             P  E     PE                    YIA YPY S EPGDLTF + E I VT+K
Sbjct: 954  IPGSEVKREEPEALYAAVNKKPTSAAYSVGEEYIALYPYSSVEPGDLTFTEGEEILVTQK 1013

Query: 134  ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSG 193
            + +WWTG+IGDR+G+FPSNYV P                                     
Sbjct: 1014 DGEWWTGSIGDRSGIFPSNYVKP------------------------------------- 1036

Query: 194  GSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGW 253
                   D  SF +A       KKPEIA V + Y A+ SEQLSL+ GQLI+I KK T+GW
Sbjct: 1037 ------KDQESFGSASKSGASNKKPEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGW 1090

Query: 254  WEGELQAKGKKRQVGWFPASYVKVMG 279
            W+GELQA+GKKRQ GWFPAS+VK++G
Sbjct: 1091 WQGELQARGKKRQKGWFPASHVKLLG 1116

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.
Homo sapiens (taxid: 9606)

>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3

 Score =  184 bits (466), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 114/271 (42%), Positives = 150/271 (55%), Gaps = 73/271 (26%)

Query: 42   RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE----PCDE 97
            +A+Y + ++  + L+F   D+I V  +Q+    W  GE++GQ GWFP+SYV+    P  +
Sbjct: 919  QALYPWRAKKDNHLNFNKNDVITVLEQQDM---WWFGEVQGQKGWFPKSYVKLISGPIRK 975

Query: 98   TGE-----------------------VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE 134
            +                         V  E +IA Y Y+S+E GDLTF Q +VI VTKK+
Sbjct: 976  STSMDSGSSESPASLKRVASPAAKPVVSGEEFIAMYTYESSEQGDLTFQQGDVILVTKKD 1035

Query: 135  NDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGG 194
             DWWTGT+GD+ G+FPSNYV                    +KD    SEG          
Sbjct: 1036 GDWWTGTVGDKAGVFPSNYVR-------------------LKD----SEG---------- 1062

Query: 195  SRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWW 254
                     S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWW
Sbjct: 1063 ---------SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWW 1112

Query: 255  EGELQAKGKKRQVGWFPASYVKVMGGGGISI 285
            EGELQA+GKKRQ+GWFPA+YVK++  G   I
Sbjct: 1113 EGELQARGKKRQIGWFPANYVKLLSPGTSKI 1143

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Isoform 1 could be involved in brain-specific synaptic vesicle recycling. Inhibits ARHGAP31 activity toward RAC1.

Homo sapiens (taxid: 9606)

>sp|Q9Z0R4|ITSN1_MOUSE Intersectin-1 OS=Mus musculus GN=Itsn1 PE=1 SV=2

 Score =  184 bits (466), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 113/271 (41%), Positives = 152/271 (56%), Gaps = 73/271 (26%)

Query: 42   RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE----PCDE 97
            +A+Y + ++  + L+F   D+I V  +Q+    W  GE++GQ GWFP+SYV+    P  +
Sbjct: 912  QALYPWRAKKDNHLNFNKSDVITVLEQQDM---WWFGEVQGQKGWFPKSYVKLISGPVRK 968

Query: 98   TGEV----------------------VP-EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE 134
            +  +                      +P E +IA Y Y+S+E GDLTF Q +VI VTKK+
Sbjct: 969  STSIDTGPTESPASLKRVASPAAKPAIPGEEFIAMYTYESSEQGDLTFQQGDVIVVTKKD 1028

Query: 135  NDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGG 194
             DWWTGT+GD++G+FPSNYV                    +KD    SEG          
Sbjct: 1029 GDWWTGTVGDKSGVFPSNYV-------------------RLKD----SEG---------- 1055

Query: 195  SRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWW 254
                     S TA + G+  GKKPEIA V+A Y AT  EQL+L+ GQLI+IRKK   GWW
Sbjct: 1056 ---------SGTAGKTGS-LGKKPEIAQVIASYAATGPEQLTLAPGQLILIRKKNPGGWW 1105

Query: 255  EGELQAKGKKRQVGWFPASYVKVMGGGGISI 285
            EGELQA+GKKRQ+GWFPA+YVK++  G   I
Sbjct: 1106 EGELQARGKKRQIGWFPANYVKLLSPGTSKI 1136

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.

Mus musculus (taxid: 10090)

>sp|O42287|ITSN1_XENLA Intersectin-1 OS=Xenopus laevis GN=itsn1 PE=1 SV=1

 Score =  182 bits (461), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 105/267 (39%), Positives = 145/267 (54%), Gaps = 73/267 (27%)

Query: 42   RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE-------- 93
            +A+Y + ++  + L+F   D+I V  +Q+    W  GE++GQ GWFP+SYV+        
Sbjct: 903  QALYPWRAKKDNHLNFNKNDVITVLEQQDM---WWFGEVQGQKGWFPKSYVKLISGPLRK 959

Query: 94   --PCDETGEVVP-----------------EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE 134
                D T    P                 E YI+ Y Y+S E GDLTF Q ++I V KK+
Sbjct: 960  STSIDSTSSESPASLKRVSSPAFKPAIQGEEYISMYTYESNEQGDLTFQQGDLIVVIKKD 1019

Query: 135  NDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGG 194
             DWWTGT+G++TG+FPSNYV P +++                             +   G
Sbjct: 1020 GDWWTGTVGEKTGVFPSNYVRPKDSE-----------------------------AAGSG 1050

Query: 195  SRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWW 254
             ++G+               GKKPEIA V+A Y AT+ EQL+L+ GQLI+IRKK   GWW
Sbjct: 1051 GKTGS--------------LGKKPEIAQVIASYAATAPEQLTLAPGQLILIRKKNPGGWW 1096

Query: 255  EGELQAKGKKRQVGWFPASYVKVMGGG 281
            EGELQA+GKKRQ+GWFPA+YVK++  G
Sbjct: 1097 EGELQARGKKRQIGWFPANYVKLLSPG 1123

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Xenopus laevis (taxid: 8355)

>sp|Q9WVE9|ITSN1_RAT Intersectin-1 OS=Rattus norvegicus GN=Itsn1 PE=1 SV=1

 Score =  179 bits (454), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/271 (40%), Positives = 151/271 (55%), Gaps = 73/271 (26%)

Query: 42   RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE----PCDE 97
            +A+Y + ++  + L+F   D+I V  +Q+    W  GE++GQ GWFP+SYV+    P  +
Sbjct: 916  QALYPWRAKKDNHLNFNKSDVITVLEQQDM---WWFGEVQGQKGWFPKSYVKLISGPVRK 972

Query: 98   TGEV----------------------VP-EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE 134
            +  +                      +P E ++A Y Y+S+E GDLTF Q  VI VTKK+
Sbjct: 973  STSIDTGPTEAPSSLKRVASPAAKPAIPGEEFVAMYTYESSEHGDLTFQQGHVIVVTKKD 1032

Query: 135  NDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGG 194
             DWWTGT+G+ +G+FPSNYV                    +KD    SEG          
Sbjct: 1033 GDWWTGTVGETSGVFPSNYVR-------------------LKD----SEG---------- 1059

Query: 195  SRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWW 254
                     S TA + G+ + KKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWW
Sbjct: 1060 ---------SGTAGKTGSLE-KKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWW 1109

Query: 255  EGELQAKGKKRQVGWFPASYVKVMGGGGISI 285
            EGELQA+GKKRQ+GWFPA+YVK++  G   I
Sbjct: 1110 EGELQARGKKRQIGWFPANYVKLLSPGTSKI 1140

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Inhibits ARHGAP31 activity toward RAC1.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z0R6|ITSN2_MOUSE Intersectin-2 OS=Mus musculus GN=Itsn2 PE=1 SV=2

 Score =  174 bits (442), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 104/271 (38%), Positives = 140/271 (51%), Gaps = 74/271 (27%)

Query: 37   EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE--- 93
            E  + +A+  + ++  + L+F   D+I V  +Q     W  GE+ G  GWFP+SYV+   
Sbjct: 853  ENLKAQALCSWTAKKENHLNFSKHDVITVLEQQE---NWWFGEVHGGRGWFPKSYVKLIP 909

Query: 94   -------------------------PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVI 128
                                     P   T   V E YIA Y Y S EPGDLTF + E I
Sbjct: 910  GNEVQRGEPEALYAAVTKKPTSTAYPVTSTAYPVGEDYIALYSYSSVEPGDLTFTEGEEI 969

Query: 129  YVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRT 188
             VT+K+ +WWTG+IG+RTG+FPSNYV P + +                            
Sbjct: 970  LVTQKDGEWWTGSIGERTGIFPSNYVRPKDQE---------------------------- 1001

Query: 189  SSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKK 248
             +    S+SG  +              KKPEIA V + Y A+ +EQLSL+ GQLI+I KK
Sbjct: 1002 -NFGNASKSGASN--------------KKPEIAQVTSAYAASGTEQLSLAPGQLILILKK 1046

Query: 249  TTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
             T+GWW+GELQA+GKKRQ GWFPAS+VK++G
Sbjct: 1047 NTSGWWQGELQARGKKRQKGWFPASHVKLLG 1077

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Mus musculus (taxid: 10090)

>sp|Q91X43|SH319_MOUSE SH3 domain-containing protein 19 OS=Mus musculus GN=Sh3d19 PE=1 SV=2

 Score = 85.5 bits (210), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 51/250 (20%)

Query: 43  AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE-----PCDE 97
           A+++F +   D+LS   G+I+ +  K +AE  W  G+ R QTG FP +YV+     P   
Sbjct: 501 ALHDFPAEQADDLSLTSGEIVYLLEKIDAE--WYRGKCRNQTGVFPANYVKVIVDIPEGR 558

Query: 98  TGEVVPEYY----------IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRT 146
           +G+   E +          +A + Y   +  +L+F++ EVI +T+  N+ W  G I DR+
Sbjct: 559 SGKR--ESFSSHCAKGPRCVARFEYIGDQKDELSFSEGEVIILTEYVNEEWGRGEIRDRS 616

Query: 147 GLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFT 206
           G+FP N+V                   +V D PT    +  T  V   +++  P  +S  
Sbjct: 617 GIFPLNFVE------------------LVGDHPTSGANILSTK-VPPKTKNEDPGSNS-- 655

Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
             Q  +P G   E    L  +TA +SE L   RG  I+I ++  + W+ G L  +     
Sbjct: 656 --QDSSPPG---EWCKALHSFTAETSEDLPFKRGDRILILERLDSDWYRGRLHDRE---- 706

Query: 267 VGWFPASYVK 276
            G FPA +V+
Sbjct: 707 -GIFPAVFVQ 715

May play a role in regulating A disintegrin and metalloproteases (ADAMs) in the signaling of EGFR-ligand shedding. May be involved in suppression of Ras-induced cellular transformation and Ras-mediated activation of ELK1. Plays a role in the regulation of cell morphology and cytoskeletal organization.

Mus musculus (taxid: 10090)

>sp|O94875|SRBS2_HUMAN Sorbin and SH3 domain-containing protein 2 OS=Homo sapiens GN=SORBS2 PE=1 SV=3

 Score = 77.4 bits (189), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 109/259 (42%), Gaps = 49/259 (18%)

Query: 42   RAIYEFVSRNGDELSFQPGDI--IMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD--- 96
            +A+Y+F ++   ELSF+ GD   I+  + QN    W  GE  G+ G FP SYVE      
Sbjct: 869  KAVYDFKAQTSKELSFKKGDTVYILRKIDQN----WYEGEHHGRVGIFPISYVEKLTPPE 924

Query: 97   --------------ETGEVVPEYYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGT 141
                          E GE      IA Y +++    +L+  + D VI + + + +W+ G 
Sbjct: 925  KAQPARPPPPAQPGEIGEA-----IAKYNFNADTNVELSLRKGDRVILLKRVDQNWYEGK 979

Query: 142  I--GDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGT 199
            I   +R G+FP +YV   +  T  A   P P  P        S    R  S+S   +   
Sbjct: 980  IPGTNRQGIFPVSYVEVVKKNTKGAEDYPDPPIP-------HSYSSDRIHSLSSN-KPQR 1031

Query: 200  PDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQ 259
            P F+       G P          L  YT  + ++L L    +I + +K   GW+ G   
Sbjct: 1032 PVFTHENIQGGGEP-------FQALYNYTPRNEDELELRESDVIDVMEKCDDGWFVG--- 1081

Query: 260  AKGKKRQVGWFPASYVKVM 278
               + +  G FP +YVK +
Sbjct: 1082 TSRRTKFFGTFPGNYVKRL 1100

Adapter protein that plays a role in the assembling of signaling complexes, being a link between ABL kinases and actin cytoskeleton. Can form complex with ABL1 and CBL, thus promoting ubiquitination and degradation of ABL1 or with AKT1 and PAK1, thus mediating AKT1-mediated activation of PAK1. Isoform 6 increases water and sodium absorption in the intestine and gall-bladder.

Homo sapiens (taxid: 9606)

>sp|O35413|SRBS2_RAT Sorbin and SH3 domain-containing protein 2 OS=Rattus norvegicus GN=Sorbs2 PE=1 SV=2

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 69/259 (26%), Positives = 110/259 (42%), Gaps = 49/259 (18%)

Query: 42   RAIYEFVSRNGDELSFQPGDI--IMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD--- 96
            +A+Y+F ++   ELSF+ GD   I+  + QN    W  GE  G+ G FP SYVE      
Sbjct: 965  KAVYDFKAQTSKELSFKKGDTVYILRKIDQN----WYEGEHHGRVGIFPISYVEKLTPPE 1020

Query: 97   --------------ETGEVVPEYYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGT 141
                          E GE      IA Y +++    +L+  + D +I + + + +W+ G 
Sbjct: 1021 KAQPARPPPPVQPGEIGEA-----IAKYNFNADTNVELSLRKGDRIILLKRVDQNWYEGK 1075

Query: 142  I--GDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGT 199
            I   +R G+FP +YV   +  T  +   P P  P        S    R  S+S  ++   
Sbjct: 1076 IPGTNRQGIFPVSYVEVVKRNTKGSEDYPDPPLP-------HSYSSDRIYSLS-SNKPQR 1127

Query: 200  PDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQ 259
            P FS       G P          L  YT  + ++L L    ++ + +K   GW+ G   
Sbjct: 1128 PVFSHENIQGGGEP-------FQALYNYTPRNEDELELRESDVVDVMEKCDDGWFVG--- 1177

Query: 260  AKGKKRQVGWFPASYVKVM 278
               + +  G FP +YVK +
Sbjct: 1178 TSRRTKFFGTFPGNYVKRL 1196

Adapter protein that plays a role in the assembling of signaling complexes, being a link between ABL kinases and actin cytoskeleton. Can form complex with ABL1 and CBL, thus promoting ubiquitination and degradation of ABL1 or with AKT1 and PAK1, thus mediating AKT1-mediated activation of PAK1 (By similarity). Isoform 2 increases water and sodium absorption in the intestine and gall-bladder.

Rattus norvegicus (taxid: 10116)

>sp|Q5HYK7|SH319_HUMAN SH3 domain-containing protein 19 OS=Homo sapiens GN=SH3D19 PE=1 SV=2

 Score = 74.7 bits (182), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/267 (23%), Positives = 103/267 (38%), Gaps = 82/267 (30%)

Query: 40  RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD--- 96
           R  A +E++    DELSF  G+II++    N E  W  GE+RG+TG FP ++VEP +   
Sbjct: 575 RCVARFEYIGEQKDELSFSEGEIIILKEYVNEE--WARGEVRGRTGIFPLNFVEPVEDYP 632

Query: 97  ------------------------ETGEVVPEYYIAAYPYDSTEPGDLTFNQ-DEVIYVT 131
                                   +   +  E+  A + + +    DL+F + D +  + 
Sbjct: 633 TSGANVLSTKVPLKTKKEDSGSNSQVNSLPAEWCEALHSFTAETSDDLSFKRGDRIQILE 692

Query: 132 KKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSV 191
           + ++DW  G + DR G+FP+ +V P  A+                               
Sbjct: 693 RLDSDWCRGRLQDREGIFPAVFVRPCPAEA------------------------------ 722

Query: 192 SGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT 251
                          +  A  PKG+K   A  L  +   + ++LS   G +I   +    
Sbjct: 723 --------------KSMLAIVPKGRK---AKALYDFRGENEDELSFKAGDIITELESVDD 765

Query: 252 GWWEGELQAKGKKRQVGWFPASYVKVM 278
            W  GEL  K      G FP +Y++ +
Sbjct: 766 DWMSGELMGKS-----GIFPKNYIQFL 787

May play a role in regulating A disintegrin and metalloproteases (ADAMs) in the signaling of EGFR-ligand shedding. May be involved in suppression of Ras-induced cellular transformation and Ras-mediated activation of ELK1. Plays a role in the regulation of cell morphology and cytoskeletal organization.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
242007521	1558	dynamin-associated protein, putative [Pe	0.972	0.181	0.475	2e-75
2996030	1011	dynamin associated protein isoform Dap16	0.713	0.204	0.489	7e-67
17137490	1014	dynamin associated protein 160, isoform	0.713	0.204	0.484	2e-66
195118554	1114	GI18101 [Drosophila mojavensis] gi|19391	0.841	0.219	0.425	2e-66
442628732	1005	dynamin associated protein 160, isoform	0.713	0.205	0.484	2e-66
2984715	1094	dynamin associated protein isoform Dap16	0.837	0.222	0.443	6e-66
281365306	1096	dynamin associated protein 160, isoform	0.837	0.221	0.441	7e-66
71834224	680	LD42142p [Drosophila melanogaster]	0.837	0.357	0.439	8e-66
17862370	662	LD23686p [Drosophila melanogaster]	0.837	0.367	0.439	9e-66
17137488	1097	dynamin associated protein 160, isoform	0.837	0.221	0.439	1e-65

>gi|242007521|ref|XP_002424588.1| dynamin-associated protein, putative [Pediculus humanus corporis] gi|212508031|gb|EEB11850.1| dynamin-associated protein, putative [Pediculus humanus corporis]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 166/349 (47%), Positives = 199/349 (57%), Gaps = 67/349 (19%)

Query: 1    MKGSARAVANSWG--------DNAWDN-APAADTWTASTDPTGVSEYRRYRAIYEFVSRN 51
            ++  A +  N+W         D +WDN     D W  S  P+  S +++YRA+Y+F SRN
Sbjct: 693  LQMKAASTNNNWDVSSGWEPPDKSWDNFNETTDNWNTSYTPSTASGFKKYRALYKFESRN 752

Query: 52   GDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD--------------- 96
             DELSFQPGDII V V QNA+PGWL+GEL G TGWFPE+YVE  D               
Sbjct: 753  PDELSFQPGDIITVSVNQNADPGWLSGELNGMTGWFPEAYVELVDDSFTTNAPDLEESNK 812

Query: 97   -------ETGEVVP----------EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWT 139
                   E  EVV           E Y++ Y Y S+EPGDL+F Q E IYVTKK+  WWT
Sbjct: 813  QPLGDISELPEVVTDKSNNENYDNEIYVSVYRYQSSEPGDLSFEQGETIYVTKKDGAWWT 872

Query: 140  GTIGDRTGLFPSNYVVPYEAQTPAAAVDPT------------------PATPVVKDTPTK 181
            GTIGDR GLFPSNYV   E +    + + T                  P   + K+    
Sbjct: 873  GTIGDRVGLFPSNYVEKIEPENKFDSSEFTNKKSDGGEVEDNTIPVQEPTDEIEKEISPS 932

Query: 182  SEGVT------RTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQL 235
             E          T   S   +  TPDFSS TAAQ  T   KK EIATV+APY ATS+EQL
Sbjct: 933  PENTNTGVKEQETFVESNQPKPVTPDFSSITAAQ--TKLSKKGEIATVIAPYQATSNEQL 990

Query: 236  SLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS 284
            SL+RGQL+ IRKKT+TGWWEGELQAKGKK+Q+GWFPASYVKVM    +S
Sbjct: 991  SLARGQLVCIRKKTSTGWWEGELQAKGKKKQIGWFPASYVKVMASRRLS 1039

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2996030|gb|AAC39139.1| dynamin associated protein isoform Dap160-2 [Drosophila melanogaster]

 Score =  259 bits (663), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 138/282 (48%), Positives = 171/282 (60%), Gaps = 75/282 (26%)

Query: 38  YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
           + +Y+A+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE   E
Sbjct: 676 FVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKL-E 734

Query: 98  TGEVVP--------------------------------------EYYIAAYPYDSTEPGD 119
            GEV P                                      EYYIAAYPY+S E GD
Sbjct: 735 VGEVAPVAAVEAPVDAQVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAEEGD 794

Query: 120 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTP 179
           L+F+  E++ V KKE +WWTGTIG RTG+FPSNYV   +  T + A     A PV     
Sbjct: 795 LSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAA----AEPV----- 845

Query: 180 TKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSR 239
                     S+  G R+                  K+ EIA V+APY ATS+EQLSL+R
Sbjct: 846 ---------ESLDQGMRA------------------KRSEIAQVIAPYEATSTEQLSLTR 878

Query: 240 GQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
           GQLIMIRKKT +GWWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 879 GQLIMIRKKTDSGWWEGELQAKGRRRQIGWFPATYVKVLQGG 920

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137490|ref|NP_477323.1| dynamin associated protein 160, isoform B [Drosophila melanogaster] gi|22946971|gb|AAN11099.1| dynamin associated protein 160, isoform B [Drosophila melanogaster]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 171/285 (60%), Gaps = 78/285 (27%)

Query: 38  YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
           + +Y+A+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE   E
Sbjct: 676 FVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKL-E 734

Query: 98  TGEVVP-----------------------------------------EYYIAAYPYDSTE 116
            GEV P                                         EYYIAAYPY+S E
Sbjct: 735 VGEVAPVAAVEAPVDAQVATVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAE 794

Query: 117 PGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVK 176
            GDL+F+  E++ V KKE +WWTGTIG RTG+FPSNYV   +  T + A     A PV  
Sbjct: 795 EGDLSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAA----AEPV-- 848

Query: 177 DTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLS 236
                        S+  G R+                  K+ EIA V+APY ATS+EQLS
Sbjct: 849 ------------ESLDQGMRA------------------KRSEIAQVIAPYEATSTEQLS 878

Query: 237 LSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
           L+RGQLIMIRKKT +GWWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 879 LTRGQLIMIRKKTDSGWWEGELQAKGRRRQIGWFPATYVKVLQGG 923

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195118554|ref|XP_002003801.1| GI18101 [Drosophila mojavensis] gi|193914376|gb|EDW13243.1| GI18101 [Drosophila mojavensis]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/334 (42%), Positives = 188/334 (56%), Gaps = 90/334 (26%)

Query: 38   YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
            + +YRA+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE  ++
Sbjct: 690  FVKYRAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKLED 749

Query: 98   ------TGEVVP--------------------------------------------EYYI 107
                  TGE V                                             EYYI
Sbjct: 750  GSTALATGEAVAVPSVADTAATLTNSYLDNNALAAQSALAATDAAAAVTDAALGDVEYYI 809

Query: 108  AAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV------------- 154
            AAYPY+S E GDL+F+  E++ V KKE +WWTGTIG+RTG+FPSNYV             
Sbjct: 810  AAYPYESAEEGDLSFSAGEMVMVIKKEGEWWTGTIGNRTGMFPSNYVQKADVGTAAVANS 869

Query: 155  --------------------VPYEAQTPAAAVDPTPATPV-VKDTPTKSEGVTRTSSVSG 193
                                  Y AQ  +  V  +   P  ++++ T  +  T  S ++ 
Sbjct: 870  AEAAVEPEPVEQEVTHNGISASYAAQPESVEVKQSQTQPAELEESHTNEDLDTEVSQINT 929

Query: 194  GSRSGTPDFSSFTAAQAGTP------KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRK 247
             S++ +    S++   + T       + K+ EIA V+APY ATSSEQLSL+RGQLIMIRK
Sbjct: 930  QSKTQSEPAESYSRPMSRTSSMTPGMRAKRSEIAQVIAPYEATSSEQLSLTRGQLIMIRK 989

Query: 248  KTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
            KT +GWWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 990  KTDSGWWEGELQAKGRRRQIGWFPATYVKVLQGG 1023

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442628732|ref|NP_001260664.1| dynamin associated protein 160, isoform H [Drosophila melanogaster] gi|440214032|gb|AGB93199.1| dynamin associated protein 160, isoform H [Drosophila melanogaster]

 Score =  258 bits (660), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 138/285 (48%), Positives = 171/285 (60%), Gaps = 78/285 (27%)

Query: 38  YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
           + +Y+A+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE   E
Sbjct: 676 FVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKL-E 734

Query: 98  TGEVVP-----------------------------------------EYYIAAYPYDSTE 116
            GEV P                                         EYYIAAYPY+S E
Sbjct: 735 VGEVAPVAAVEAPVDAQVATVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAE 794

Query: 117 PGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVK 176
            GDL+F+  E++ V KKE +WWTGTIG RTG+FPSNYV   +  T + A     A PV  
Sbjct: 795 EGDLSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAA----AEPV-- 848

Query: 177 DTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLS 236
                        S+  G R+                  K+ EIA V+APY ATS+EQLS
Sbjct: 849 ------------ESLDQGMRA------------------KRSEIAQVIAPYEATSTEQLS 878

Query: 237 LSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
           L+RGQLIMIRKKT +GWWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 879 LTRGQLIMIRKKTDSGWWEGELQAKGRRRQIGWFPATYVKVLQGG 923

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|2984715|gb|AAC39138.1| dynamin associated protein isoform Dap160-1 [Drosophila melanogaster]

 Score =  256 bits (655), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 146/329 (44%), Positives = 189/329 (57%), Gaps = 86/329 (26%)

Query: 38   YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
            + +Y+A+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE   E
Sbjct: 676  FVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKL-E 734

Query: 98   TGEVVP--------------------------------------EYYIAAYPYDSTEPGD 119
             GEV P                                      EYYIAAYPY+S E GD
Sbjct: 735  VGEVAPVAAVEAPVDAQVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAEEGD 794

Query: 120  LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPA-AAVDPTP-------- 170
            L+F+  E++ V KKE +WWTGTIG RTG+FPSNYV   +  T + AA +P          
Sbjct: 795  LSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAAAEPVESLDQETTL 854

Query: 171  -------ATPVV--------------KDTPTKSEGV----------TRTSSVSGGSRSGT 199
                   A PV                + P  S GV          T  S ++  S++ +
Sbjct: 855  NGNAAYTAAPVEAQEQVYQPLPVQEPSEQPISSPGVGAEEAHEDLDTEVSQINTQSKTQS 914

Query: 200  PDFS-------SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG 252
             + +       S T++     + K+ EIA V+APY ATS+EQLSL+RGQLIMIRKKT +G
Sbjct: 915  SEPAESYSRPMSRTSSMTPGMRAKRSEIAQVIAPYEATSTEQLSLTRGQLIMIRKKTDSG 974

Query: 253  WWEGELQAKGKKRQVGWFPASYVKVMGGG 281
            WWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 975  WWEGELQAKGRRRQIGWFPATYVKVLQGG 1003

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|281365306|ref|NP_001163028.1| dynamin associated protein 160, isoform C [Drosophila melanogaster] gi|90855691|gb|ABE01207.1| IP14822p [Drosophila melanogaster] gi|272407122|gb|ACZ94314.1| dynamin associated protein 160, isoform C [Drosophila melanogaster]

 Score =  256 bits (655), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/331 (44%), Positives = 189/331 (57%), Gaps = 88/331 (26%)

Query: 38   YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
            + +Y+A+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE   E
Sbjct: 676  FVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKL-E 734

Query: 98   TGEVVP-----------------------------------------EYYIAAYPYDSTE 116
             GEV P                                         EYYIAAYPY+S E
Sbjct: 735  VGEVAPVAAVEAPVDAQVATVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAE 794

Query: 117  PGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYE-------AQTPAAAVDPT 169
             GDL+F+  E++ V KKE +WWTGTIG RTG+FPSNYV   +       A  P  ++D T
Sbjct: 795  EGDLSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAAAEPVESLDQT 854

Query: 170  P--------ATPVV--------------KDTPTKSEGV----------TRTSSVSGGSRS 197
                     A PV                + P  S GV          T  S ++  S++
Sbjct: 855  TLNGNAAYTAAPVEAQEQVYQPLPVQEPSEQPISSPGVGAEEAHEDLDTEVSQINTQSKT 914

Query: 198  GTPDFS-------SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT 250
             + + +       S T++     + K+ EIA V+APY ATS+EQLSL+RGQLIMIRKKT 
Sbjct: 915  QSSEPAESYSRPMSRTSSMTPGMRAKRSEIAQVIAPYEATSTEQLSLTRGQLIMIRKKTD 974

Query: 251  TGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
            +GWWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 975  SGWWEGELQAKGRRRQIGWFPATYVKVLQGG 1005

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|71834224|gb|AAZ41784.1| LD42142p [Drosophila melanogaster]

 Score =  256 bits (654), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 146/332 (43%), Positives = 189/332 (56%), Gaps = 89/332 (26%)

Query: 38  YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
           + +Y+A+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE   E
Sbjct: 259 FVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKL-E 317

Query: 98  TGEVVP-----------------------------------------EYYIAAYPYDSTE 116
            GEV P                                         EYYIAAYPY+S E
Sbjct: 318 VGEVAPVAAVEAPVDAQVATVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAE 377

Query: 117 PGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPA-AAVDPTP----- 170
            GDL+F+  E++ V KKE +WWTGTIG RTG+FPSNYV   +  T + AA +P       
Sbjct: 378 EGDLSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAAAEPVESLDQE 437

Query: 171 ----------ATPVV--------------KDTPTKSEGV----------TRTSSVSGGSR 196
                     A PV                + P  S GV          T  S ++  S+
Sbjct: 438 TTLNGNAAYTAAPVEAQEQVYQPLPVQEPSEQPISSPGVGAEEAHEDLDTEVSQINTQSK 497

Query: 197 SGTPDFS-------SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT 249
           + + + +       S T++     + K+ EIA V+APY ATS+EQLSL+RGQLIMIRKKT
Sbjct: 498 TQSSEPAEIYSRPMSRTSSMTPGMRAKRSEIAQVIAPYEATSTEQLSLTRGQLIMIRKKT 557

Query: 250 TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
            +GWWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 558 DSGWWEGELQAKGRRRQIGWFPATYVKVLQGG 589

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17862370|gb|AAL39662.1| LD23686p [Drosophila melanogaster]

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 146/332 (43%), Positives = 189/332 (56%), Gaps = 89/332 (26%)

Query: 38  YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
           + +Y+A+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE   E
Sbjct: 241 FVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKL-E 299

Query: 98  TGEVVP-----------------------------------------EYYIAAYPYDSTE 116
            GEV P                                         EYYIAAYPY+S E
Sbjct: 300 VGEVAPVAAVEAPVDAQVATVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAE 359

Query: 117 PGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPA-AAVDPTP----- 170
            GDL+F+  E++ V KKE +WWTGTIG RTG+FPSNYV   +  T + AA +P       
Sbjct: 360 EGDLSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAAAEPVESLDQE 419

Query: 171 ----------ATPVV--------------KDTPTKSEGV----------TRTSSVSGGSR 196
                     A PV                + P  S GV          T  S ++  S+
Sbjct: 420 TTLNGNAAYTAAPVEAQEQVYQPLPVQEPSEQPISSPGVGAEEAHEDLDTEVSQINTQSK 479

Query: 197 SGTPDFS-------SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT 249
           + + + +       S T++     + K+ EIA V+APY ATS+EQLSL+RGQLIMIRKKT
Sbjct: 480 TQSSEPAEIYSRPMSRTSSMTPGMRAKRSEIAQVIAPYEATSTEQLSLTRGQLIMIRKKT 539

Query: 250 TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
            +GWWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 540 DSGWWEGELQAKGRRRQIGWFPATYVKVLQGG 571

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137488|ref|NP_477322.1| dynamin associated protein 160, isoform A [Drosophila melanogaster] gi|7298751|gb|AAF53962.1| dynamin associated protein 160, isoform A [Drosophila melanogaster]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/332 (43%), Positives = 189/332 (56%), Gaps = 89/332 (26%)

Query: 38   YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
            + +Y+A+YEF +RN +E++F PGDII+VP++QNAEPGWLAGE+ G TGWFPESYVE   E
Sbjct: 676  FVKYQAVYEFNARNAEEITFVPGDIILVPLEQNAEPGWLAGEINGHTGWFPESYVEKL-E 734

Query: 98   TGEVVP-----------------------------------------EYYIAAYPYDSTE 116
             GEV P                                         EYYIAAYPY+S E
Sbjct: 735  VGEVAPVAAVEAPVDAQVATVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAE 794

Query: 117  PGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTPA-AAVDPTP----- 170
             GDL+F+  E++ V KKE +WWTGTIG RTG+FPSNYV   +  T + AA +P       
Sbjct: 795  EGDLSFSAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAAAEPVESLDQE 854

Query: 171  ----------ATPVV--------------KDTPTKSEGV----------TRTSSVSGGSR 196
                      A PV                + P  S GV          T  S ++  S+
Sbjct: 855  TTLNGNAAYTAAPVEAQEQVYQPLPVQEPSEQPISSPGVGAEEAHEDLDTEVSQINTQSK 914

Query: 197  SGTPDFS-------SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT 249
            + + + +       S T++     + K+ EIA V+APY ATS+EQLSL+RGQLIMIRKKT
Sbjct: 915  TQSSEPAESYSRPMSRTSSMTPGMRAKRSEIAQVIAPYEATSTEQLSLTRGQLIMIRKKT 974

Query: 250  TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG 281
             +GWWEGELQAKG++RQ+GWFPA+YVKV+ GG
Sbjct: 975  DSGWWEGELQAKGRRRQIGWFPATYVKVLQGG 1006

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	290
UNIPROTKB|I3LSM1	725	LOC100737549 "Uncharacterized	0.265	0.106	0.666	3.8e-60
UNIPROTKB|G3N0W1	1215	ITSN1 "Uncharacterized protein	0.265	0.063	0.666	4.9e-59
UNIPROTKB|E7ERJ0	1178	ITSN1 "Intersectin-1" [Homo sa	0.265	0.065	0.666	5.4e-59
UNIPROTKB|B4DTM2	1215	ITSN1 "Intersectin-1" [Homo sa	0.265	0.063	0.666	6.2e-59
UNIPROTKB|E1BUQ4	1712	ITSN1 "Uncharacterized protein	0.268	0.045	0.645	1.2e-58
UNIPROTKB|E1BKY4	1716	ITSN1 "Uncharacterized protein	0.265	0.044	0.666	1.9e-58
UNIPROTKB|A8CTY3	1660	ITSN1 "Intersectin 1 long form	0.265	0.046	0.666	2.2e-58
UNIPROTKB|A8CTX8	1716	ITSN1 "Intersectin-1" [Homo sa	0.265	0.044	0.666	2.5e-58
MGI|MGI:1338069	1714	Itsn1 "intersectin 1 (SH3 doma	0.265	0.044	0.653	1.1e-57
UNIPROTKB|D4A121	1713	Itsn1 "Intersectin 1" [Rattus	0.265	0.044	0.666	1.7e-57

UNIPROTKB|I3LSM1 LOC100737549 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 272 (100.8 bits), Expect = 3.8e-60, Sum P(3) = 3.8e-60
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:   522 SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 580

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:   581 KRQIGWFPANYVKLLSPG 598

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

UNIPROTKB|G3N0W1 ITSN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 4.9e-59, Sum P(3) = 4.9e-59
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:  1058 SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 1116

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:  1117 KRQIGWFPANYVKLLSPG 1134

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

UNIPROTKB|E7ERJ0 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 5.4e-59, Sum P(3) = 5.4e-59
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:  1021 SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 1079

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:  1080 KRQIGWFPANYVKLLSPG 1097

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|B4DTM2 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 6.2e-59, Sum P(3) = 6.2e-59
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:  1058 SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 1116

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:  1117 KRQIGWFPANYVKLLSPG 1134

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|E1BUQ4 ITSN1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 268 (99.4 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
 Identities = 51/79 (64%), Positives = 63/79 (79%)

Query:   203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
             +S  A + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+G
Sbjct:  1052 ASGAAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARG 1110

Query:   263 KKRQVGWFPASYVKVMGGG 281
             KKRQ+GWFPA+YVK++  G
Sbjct:  1111 KKRQIGWFPANYVKLLSPG 1129

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0070064 "proline-rich region binding" evidence=IEA

UNIPROTKB|E1BKY4 ITSN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 272 (100.8 bits), Expect = 1.9e-58, Sum P(3) = 1.9e-58
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:  1058 SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 1116

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:  1117 KRQIGWFPANYVKLLSPG 1134

GO:0070064 "proline-rich region binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IEA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030027 "lamellipodium" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005905 "coated pit" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

UNIPROTKB|A8CTY3 ITSN1 "Intersectin 1 long form variant 3" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 2.2e-58, Sum P(3) = 2.2e-58
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:  1058 SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 1116

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:  1117 KRQIGWFPANYVKLLSPG 1134

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|A8CTX8 ITSN1 "Intersectin-1" [Homo sapiens (taxid:9606)]

 Score = 272 (100.8 bits), Expect = 2.5e-58, Sum P(3) = 2.5e-58
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:  1058 SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 1116

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:  1117 KRQIGWFPANYVKLLSPG 1134

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:1338069 Itsn1 "intersectin 1 (SH3 domain protein 1A)" [Mus musculus (taxid:10090)]

 Score = 267 (99.0 bits), Expect = 1.1e-57, Sum P(3) = 1.1e-57
 Identities = 51/78 (65%), Positives = 62/78 (79%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A Y AT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:  1056 SGTAGKTGS-LGKKPEIAQVIASYAATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 1114

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:  1115 KRQIGWFPANYVKLLSPG 1132

GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0005905 "coated pit" evidence=ISO

GO:0006897 "endocytosis" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019209 "kinase activator activity" evidence=IDA

GO:0030027 "lamellipodium" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0032947 "protein complex scaffold" evidence=ISO

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0042995 "cell projection" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0043524 "negative regulation of neuron apoptotic process" evidence=IMP

GO:0045202 "synapse" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051897 "positive regulation of protein kinase B signaling cascade" evidence=IDA

GO:0070064 "proline-rich region binding" evidence=ISO

UNIPROTKB|D4A121 Itsn1 "Intersectin 1" [Rattus norvegicus (taxid:10116)]

 Score = 272 (100.8 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
 Identities = 52/78 (66%), Positives = 63/78 (80%)

Query:   204 SFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK 263
             S TA + G+  GKKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GK
Sbjct:  1055 SGTAGKTGS-LGKKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGK 1113

Query:   264 KRQVGWFPASYVKVMGGG 281
             KRQ+GWFPA+YVK++  G
Sbjct:  1114 KRQIGWFPANYVKLLSPG 1131

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006897 "endocytosis" evidence=IEA

GO:0032947 "protein complex scaffold" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	290
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	7e-30
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	9e-28
cd11993	65	cd11993, SH3_Intersectin1_4, Fourth Src homology 3	5e-26
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	8e-25
cd11994	59	cd11994, SH3_Intersectin2_4, Fourth Src homology 3	1e-22
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	2e-19
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	7e-19
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	2e-17
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	3e-17
smart00326	56	smart00326, SH3, Src homology 3 domains	1e-15
smart00326	56	smart00326, SH3, Src homology 3 domains	3e-15
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-14
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	3e-14
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-13
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	5e-13
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	5e-13
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	7e-13
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	8e-13
smart00326	56	smart00326, SH3, Src homology 3 domains	9e-13
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	1e-12
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-12
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	4e-12
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	7e-12
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	1e-11
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	3e-11
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	3e-11
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	5e-11
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	7e-11
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	9e-11
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	2e-10
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	4e-10
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	4e-10
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	5e-10
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	5e-10
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	6e-10
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	7e-10
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	1e-09
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	1e-09
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	1e-09
pfam00018	47	pfam00018, SH3_1, SH3 domain	1e-09
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	1e-09
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	2e-09
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	2e-09
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	3e-09
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	3e-09
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	3e-09
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	4e-09
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	4e-09
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	5e-09
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	7e-09
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	7e-09
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	9e-09
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	1e-08
pfam00018	47	pfam00018, SH3_1, SH3 domain	1e-08
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	1e-08
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	1e-08
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-08
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	2e-08
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	2e-08
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	2e-08
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	2e-08
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	2e-08
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	3e-08
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	3e-08
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	4e-08
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	4e-08
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	4e-08
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	4e-08
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	5e-08
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	5e-08
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	5e-08
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	6e-08
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	6e-08
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	7e-08
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	7e-08
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	8e-08
cd11780	55	cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Ho	8e-08
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	8e-08
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	9e-08
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	9e-08
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	1e-07
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	1e-07
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	1e-07
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	1e-07
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	1e-07
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	1e-07
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-07
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	1e-07
cd12064	56	cd12064, SH3_GRAF, Src Homology 3 domain of GTPase	1e-07
cd11896	55	cd11896, SH3_SNX33, Src Homology 3 domain of Sorti	1e-07
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	2e-07
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	2e-07
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	2e-07
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	2e-07
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	2e-07
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	2e-07
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	2e-07
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	2e-07
pfam00018	47	pfam00018, SH3_1, SH3 domain	3e-07
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	3e-07
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	3e-07
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	3e-07
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	3e-07
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	4e-07
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	4e-07
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	4e-07
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	4e-07
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	4e-07
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	4e-07
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	4e-07
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	4e-07
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	4e-07
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	5e-07
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	5e-07
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	5e-07
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	5e-07
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	6e-07
cd11914	59	cd11914, SH3_BAIAP2L2, Src Homology 3 domain of Br	6e-07
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	6e-07
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	6e-07
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	6e-07
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	6e-07
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	6e-07
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	6e-07
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	7e-07
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	7e-07
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	7e-07
cd12065	54	cd12065, SH3_GRAF2, Src Homology 3 domain of GTPas	7e-07
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	7e-07
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	8e-07
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	9e-07
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	9e-07
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	9e-07
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	1e-06
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	1e-06
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-06
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	1e-06
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	1e-06
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	1e-06
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	1e-06
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	1e-06
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	1e-06
cd12068	55	cd12068, SH3_MYO15B, Src Homology 3 domain of Myos	1e-06
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	2e-06
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	2e-06
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	2e-06
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	2e-06
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	2e-06
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	2e-06
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	2e-06
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	2e-06
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	2e-06
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	2e-06
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	2e-06
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	2e-06
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	2e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	3e-06
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	3e-06
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	3e-06
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	4e-06
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	4e-06
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	4e-06
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	4e-06
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	4e-06
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	4e-06
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	4e-06
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	4e-06
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	5e-06
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	5e-06
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	5e-06
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	5e-06
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	5e-06
cd11791	59	cd11791, SH3_UBASH3, Src homology 3 domain of Ubiq	5e-06
cd11897	55	cd11897, SH3_SNX18, Src Homology 3 domain of Sorti	5e-06
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	6e-06
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	6e-06
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	6e-06
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	6e-06
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	6e-06
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	6e-06
cd11940	55	cd11940, SH3_ARHGEF5_19, Src homology 3 domain of	7e-06
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	7e-06
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	7e-06
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	9e-06
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	9e-06
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	9e-06
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	1e-05
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	1e-05
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	1e-05
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	1e-05
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-05
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	1e-05
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	1e-05
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	1e-05
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	1e-05
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	1e-05
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	1e-05
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	1e-05
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	1e-05
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	1e-05
cd11916	59	cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src H	1e-05
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	1e-05
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	1e-05
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	1e-05
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	1e-05
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	1e-05
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	1e-05
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	1e-05
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	2e-05
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	2e-05
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	2e-05
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	2e-05
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	2e-05
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	2e-05
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	2e-05
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	2e-05
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	2e-05
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	2e-05
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	2e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	2e-05
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	3e-05
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	3e-05
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	3e-05
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	3e-05
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	3e-05
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	3e-05
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	3e-05
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	3e-05
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	3e-05
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	4e-05
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	4e-05
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	4e-05
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	4e-05
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	4e-05
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	4e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	4e-05
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	4e-05
cd12066	55	cd12066, SH3_GRAF3, Src Homology 3 domain of GTPas	5e-05
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	5e-05
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	5e-05
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	5e-05
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	5e-05
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	6e-05
cd11921	55	cd11921, SH3_Vinexin_1, First Src Homology 3 domai	6e-05
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	6e-05
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	6e-05
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	6e-05
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	7e-05
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	7e-05
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	7e-05
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	7e-05
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	8e-05
cd11829	52	cd11829, SH3_GAS7, Src homology 3 domain of Growth	8e-05
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	8e-05
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	8e-05
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	8e-05
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	8e-05
cd11801	55	cd11801, SH3_JIP1_like, Src homology 3 domain of J	8e-05
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	9e-05
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	1e-04
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	1e-04
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	1e-04
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	1e-04
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	1e-04
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	1e-04
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	1e-04
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	1e-04
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	1e-04
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	1e-04
cd11872	56	cd11872, SH3_DOCK_AB, Src Homology 3 domain of Cla	1e-04
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	1e-04
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	1e-04
cd11937	60	cd11937, SH3_UBASH3A, Src homology 3 domain of Ubi	1e-04
cd11918	58	cd11918, SH3_Vinexin_3, Third (or C-terminal) Src	1e-04
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	2e-04
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	2e-04
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	2e-04
cd12047	53	cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 do	2e-04
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	2e-04
cd11957	52	cd11957, SH3_RUSC2, Src homology 3 domain of RUN a	2e-04
cd11913	58	cd11913, SH3_BAIAP2L1, Src Homology 3 domain of Br	2e-04
cd11932	57	cd11932, SH3_SH3RF2_2, Second Src Homology 3 domai	2e-04
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	2e-04
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	2e-04
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	2e-04
cd11788	59	cd11788, SH3_RasGAP, Src Homology 3 domain of Ras	2e-04
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	2e-04
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	2e-04
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	3e-04
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	3e-04
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	3e-04
cd11779	57	cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain	3e-04
cd11919	55	cd11919, SH3_Sorbs1_1, First Src Homology 3 domain	3e-04
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	3e-04
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	3e-04
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	3e-04
cd11931	55	cd11931, SH3_SH3RF3_2, Second Src Homology 3 domai	3e-04
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	3e-04
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	3e-04
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	4e-04
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	4e-04
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	4e-04
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	4e-04
cd11962	54	cd11962, SH3_Abp1_fungi_C1, First C-terminal Src h	4e-04
cd11941	57	cd11941, SH3_ARHGEF37_C2, Second C-terminal Src ho	4e-04
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	5e-04
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	5e-04
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	5e-04
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	5e-04
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	5e-04
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	5e-04
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	6e-04
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	6e-04
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	6e-04
cd11917	61	cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src H	6e-04
cd11871	54	cd11871, SH3_p67phox_N, N-terminal (or first) Src	6e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	7e-04
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	7e-04
cd11989	52	cd11989, SH3_Intersectin1_2, Second Src homology 3	7e-04
cd11990	52	cd11990, SH3_Intersectin2_2, Second Src homology 3	7e-04
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	7e-04
cd11965	57	cd11965, SH3_ASAP1, Src homology 3 domain of ArfGA	7e-04
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	8e-04
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	8e-04
cd11796	51	cd11796, SH3_DNMBP_N3, Third N-terminal Src homolo	8e-04
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	8e-04
cd12003	62	cd12003, SH3_EFS, Src homology 3 domain of CAS (Cr	8e-04
cd11938	55	cd11938, SH3_ARHGEF16_26, Src homology 3 domain of	9e-04
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	9e-04
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	9e-04
cd11839	58	cd11839, SH3_Intersectin_4, Fourth Src homology 3	0.001
cd11793	55	cd11793, SH3_ephexin1_like, Src homology 3 domain	0.001
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	0.001
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	0.001
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	0.001
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	0.001
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	0.001
cd11902	55	cd11902, SH3_Nck2_2, Second Src Homology 3 domain	0.001
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	0.001
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	0.001
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	0.001
cd12016	54	cd12016, SH3_Tks_2, Second Src homology 3 domain o	0.001
cd11936	62	cd11936, SH3_UBASH3B, Src homology 3 domain of Ubi	0.001
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	0.001
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	0.001
cd11982	52	cd11982, SH3_Shank1, Src homology 3 domain of SH3	0.001
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	0.001
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	0.001
cd11987	55	cd11987, SH3_Intersectin1_1, First Src homology 3	0.002
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	0.002
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	0.002
cd11797	50	cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homol	0.002
cd11785	55	cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homo	0.002
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	0.002
cd11783	55	cd11783, SH3_SH3RF_3, Third Src Homology 3 domain	0.002
cd11932	57	cd11932, SH3_SH3RF2_2, Second Src Homology 3 domai	0.002
cd11784	55	cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain	0.002
cd11970	60	cd11970, SH3_PLCgamma1, Src homology 3 domain of P	0.002
cd11965	57	cd11965, SH3_ASAP1, Src homology 3 domain of ArfGA	0.002
cd11973	73	cd11973, SH3_ASEF, Src homology 3 domain of APC-St	0.002
cd12002	57	cd12002, SH3_NEDD9, Src homology 3 domain of CAS (	0.002
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	0.002
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	0.002
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	0.002
cd11832	50	cd11832, SH3_Shank, Src homology 3 domain of SH3 a	0.002
cd11974	54	cd11974, SH3_ASEF2, Src homology 3 domain of APC-S	0.002
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	0.002
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	0.003
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	0.003
cd11870	53	cd11870, SH3_p67phox-like_C, C-terminal Src Homolo	0.003
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	0.003
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	0.003
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	0.003
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	0.003
cd11939	55	cd11939, SH3_ephexin1, Src homology 3 domain of th	0.003
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	0.003
cd11930	55	cd11930, SH3_SH3RF1_2, Second Src Homology 3 domai	0.003
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	0.003
cd11800	57	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src	0.003
cd11945	61	cd11945, SH3_Endophilin_B1, Src homology 3 domain	0.003
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	0.003
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	0.004
cd11977	58	cd11977, SH3_VAV2_2, C-terminal (or second) Src ho	0.004
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	0.004
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	0.004
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	0.004
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	0.004
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	0.004
cd12139	72	cd12139, SH3_Bin1, Src Homology 3 domain of Bridgi	0.004
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	0.004
cd11926	55	cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain	0.004
cd11802	52	cd11802, SH3_Endophilin_B, Src homology 3 domain o	0.004
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	0.004

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score =  107 bits (268), Expect = 7e-30
 Identities = 40/58 (68%), Positives = 53/58 (91%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           IA V+AP+TAT+  QLSL+ GQL+++RKK+ +GWWEGELQA+GKKRQ+GWFPA+YVK+
Sbjct: 1   IAQVIAPFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYVKL 58

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score =  101 bits (254), Expect = 9e-28
 Identities = 38/54 (70%), Positives = 45/54 (83%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +YRA+Y F +RN DE+SFQPGDII V   Q AEPGWLAGEL+G+TGWFP +YVE
Sbjct: 1  KYRALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYVE 54

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212926 cd11993, SH3_Intersectin1_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-1

 Score = 97.5 bits (242), Expect = 5e-26
 Identities = 46/63 (73%), Positives = 55/63 (87%)

Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           KKPEIA V+A YTAT  EQL+L+ GQLI+IRKK   GWWEGELQA+GKKRQ+GWFPA+YV
Sbjct: 1   KKPEIAQVIASYTATGPEQLTLAPGQLILIRKKNPGGWWEGELQARGKKRQIGWFPANYV 60

Query: 276 KVM 278
           K++
Sbjct: 61  KLL 63

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 65

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 93.6 bits (233), Expect = 8e-25
 Identities = 39/52 (75%), Positives = 44/52 (84%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 156
            YIA YPY+S EPGDLTFN  +VI VTKK+ +WWTGTIGDRTG+FPSNYV P
Sbjct: 1   EYIALYPYESNEPGDLTFNAGDVILVTKKDGEWWTGTIGDRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212927 cd11994, SH3_Intersectin2_4, Fourth Src homology 3 domain (or SH3D) of Intersectin-2

 Score = 88.1 bits (218), Expect = 1e-22
 Identities = 39/59 (66%), Positives = 47/59 (79%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           IA V   Y A+  EQLSLS GQLI+I KK ++GWW GELQA+GKKRQ GWFPAS+VK++
Sbjct: 1   IAQVTTAYVASGVEQLSLSPGQLILILKKNSSGWWLGELQARGKKRQKGWFPASHVKLL 59

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fourth SH3 domain (or SH3D) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 79.7 bits (196), Expect = 2e-19
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 156
           YIA YPY S+EPGDLTFN+ E I VT+K+ +WWTG+I DRTG+FPSNYV P
Sbjct: 2   YIALYPYSSSEPGDLTFNEGEEILVTQKDGEWWTGSIEDRTGIFPSNYVRP 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 78.1 bits (192), Expect = 7e-19
 Identities = 35/51 (68%), Positives = 42/51 (82%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 156
           Y+A Y Y+S E GDLTF Q +VI VTKK+ DWWTGT+GD+TG+FPSNYV P
Sbjct: 2   YVAMYTYESNEQGDLTFQQGDVILVTKKDGDWWTGTVGDKTGVFPSNYVRP 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 74.1 bits (182), Expect = 2e-17
 Identities = 31/53 (58%), Positives = 36/53 (67%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          YRA+Y F +RN DE+SF  GDII V  K   EPGWL G  +G  GWFP +YVE
Sbjct: 4  YRALYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 56

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 73.9 bits (181), Expect = 3e-17
 Identities = 32/53 (60%), Positives = 41/53 (77%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          YRA+Y F +R+ DE++ QPGDI+MV   Q  EPGWL GEL+G+TGWFP +Y E
Sbjct: 2  YRALYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGKTGWFPANYAE 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 69.1 bits (170), Expect = 1e-15
 Identities = 26/58 (44%), Positives = 41/58 (70%), Gaps = 3/58 (5%)

Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 93
          E  + RA+Y++ +++ DELSF+ GDII V ++++ + GW  G L RG+ G FP +YVE
Sbjct: 1  EGPQVRALYDYTAQDPDELSFKKGDIITV-LEKS-DDGWWKGRLGRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 68.3 bits (168), Expect = 3e-15
 Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYV 154
                 A Y Y + +P +L+F + ++I V +K +D WW G +G  + GLFPSNYV
Sbjct: 1   EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGRGKEGLFPSNYV 55

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 66.3 bits (163), Expect = 1e-14
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNY 153
           Y  A Y Y++ +  +L+F + ++I V +K++D WW G +   R GLFP+NY
Sbjct: 1   YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 65.5 bits (160), Expect = 3e-14
 Identities = 25/53 (47%), Positives = 35/53 (66%), Gaps = 3/53 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
             +A Y +   +PGDL F + ++I + KK   +NDWWTG IG R G+FP+NYV
Sbjct: 1   KAVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYV 53

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 28/54 (51%), Positives = 35/54 (64%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R +A+Y + +   DELS QPGDII V  KQ  + GW  GEL G+ G FP +YVE
Sbjct: 1  RCKALYSYTANREDELSLQPGDIIEVHEKQ--DDGWWLGELNGKKGIFPATYVE 52

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 62.3 bits (152), Expect = 5e-13
 Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          R RA+Y   + +  ELSF+PG II   V+ + EPGWL G L G+TG  PE+YVE 
Sbjct: 1  RARALYACKAEDESELSFEPGQII-TNVQPSDEPGWLEGTLNGRTGLIPENYVEF 54

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 61.9 bits (151), Expect = 5e-13
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 1/52 (1%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGDRTGLFPSNYVVP 156
           + A Y Y++  P +L+F + +++Y++ K + +WW  T G +TGL PSNYV  
Sbjct: 2   FRALYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATCGGKTGLIPSNYVEE 53

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 61.5 bits (150), Expect = 7e-13
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A Y ++  EPG+L F + ++I V    + DWW G +  R G+FP+NYV P
Sbjct: 4   ALYDFNPQEPGELEFRRGDIITVLDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 61.7 bits (150), Expect = 8e-13
 Identities = 29/53 (54%), Positives = 36/53 (67%), Gaps = 2/53 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
           A++ + ++N DELSFQ GDII V  K   +P W  GEL GQTG FP +YVEP
Sbjct: 3  IALFPYTAQNEDELSFQKGDIINVLSKD--DPDWWRGELNGQTGLFPSNYVEP 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 61.4 bits (150), Expect = 9e-13
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +      L  YTA   ++LS  +G +I + +K+  GWW+G L     + + G FP++YV+
Sbjct: 1   EGPQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRL----GRGKEGLFPSNYVE 56

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 61.3 bits (149), Expect = 1e-12
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 3/50 (6%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYV---TKKENDWWTGTIGDRTGLFPSNYV 154
           A Y ++  +P DL+F   + I V   T  + DWW G +  R G+FP+NYV
Sbjct: 4   ALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 28/54 (51%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
           RA + F   N DELSF  GDII   V Q  E GW  G L G+TGWFP +YV+ 
Sbjct: 2  VRAKFNFEGTNEDELSFDKGDIIT--VTQVVEGGWWEGTLNGKTGWFPSNYVKE 53

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 59.4 bits (145), Expect = 4e-12
 Identities = 23/53 (43%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESY 91
            RA+Y++ +++ DELSF+ GDII   V +  + GW  GEL  G+ G FP +Y
Sbjct: 1  YARALYDYEAQDDDELSFKKGDIIT--VLEKDDDGWWEGELNGGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 59.0 bits (144), Expect = 7e-12
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
            A  L  Y A   ++LS  +G +I + +K   GWWEGEL       + G FPA+Y
Sbjct: 1   YARALYDYEAQDDDELSFKKGDIITVLEKDDDGWWEGELN----GGREGLFPANY 51

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 21/49 (42%), Positives = 33/49 (67%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           +A Y Y + +  +L+F + ++IYVTKK ++ W+ G +   TGLFP NYV
Sbjct: 3   VALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGVTGLFPGNYV 51

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 57.0 bits (138), Expect = 3e-11
 Identities = 23/51 (45%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           IA +PY +    +L+F + ++I V  K++ DWW G +  +TGLFPSNYV P
Sbjct: 3   IALFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNGQTGLFPSNYVEP 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 21/55 (38%), Positives = 36/55 (65%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          + R ++++ + N DEL+ + GDI+ +  K   + GW  GEL G+ G FP+++VEP
Sbjct: 1  KARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDII-MVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
           A+  +++R+   LSF  GD+I ++P +   +PGWL G L G++G FP+ YV+P
Sbjct: 3  VAVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEYVQP 56

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 56.3 bits (136), Expect = 7e-11
 Identities = 20/54 (37%), Positives = 34/54 (62%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
           R ++++     DEL+ + GD+I V  K+  + GW  GEL G+ G+FP+++V P
Sbjct: 2  CRVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVMP 55

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 55.8 bits (135), Expect = 9e-11
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEP 94
          + RA+Y+F S+   ELS + G+++ +  +Q+   GWL G   RG+ G FP SYVE 
Sbjct: 1  KVRALYDFDSQPSGELSLRAGEVLTI-TRQDVGDGWLEGRNSRGEVGLFPSSYVEI 55

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           A Y YD+ +  +L+FN+ ++I + K+  + WWTG +  + GLFP NYV
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRLRGKEGLFPGNYV 51

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 27/52 (51%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           A+Y++ +   DELSFQ GDII V  K+N + GW  G L G TG FP +YVE
Sbjct: 3  VALYDYTADKDDELSFQEGDIIYV-TKKNDD-GWYEGVLNGVTGLFPGNYVE 52

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 22/51 (43%), Positives = 34/51 (66%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +A++ +   N DEL F+ G+II++  K   EPGW  GEL G+ G FP+++V
Sbjct: 5  KALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFPDNFV 55

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 53.8 bits (130), Expect = 5e-10
 Identities = 25/55 (45%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          R +A+Y+F  +   EL F+ GDII V    +++P W  GELRG+ G FP +YV+P
Sbjct: 1  RVQALYDFNPQEPGELEFRRGDIITV--LDSSDPDWWKGELRGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + +A+Y + +++ DELSF  GDII + +K++   GW  G LRG+ G FP +YVE
Sbjct: 1  QCKALYAYDAQDTDELSFNEGDIIEI-LKEDPS-GWWTGRLRGKEGLFPGNYVE 52

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 6/55 (10%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          RA+Y F +++  ELS + GDII +   + +N    W  GE  G+ G FP SYVE 
Sbjct: 3  RALYPFKAQSAKELSLKKGDIIYIRRQIDKN----WYEGEHNGRVGIFPASYVEI 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 53.4 bits (129), Expect = 7e-10
 Identities = 24/53 (45%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           RA+Y+F   N  EL F+ GDII +   Q  E  W  G + GQ+G+FP +YVE
Sbjct: 3  CRALYDFEPENEGELGFKEGDIITL-TNQIDE-NWYEGMVNGQSGFFPVNYVE 53

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 20/54 (37%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +RA+Y++ +++ DELSF+ GD++ +  K +  P W      G+TG  P +YVE 
Sbjct: 2  FRALYDYEAQHPDELSFEEGDLLYISDKSD--PNWWKATCGGKTGLIPSNYVEE 53

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
            RA+Y++  +  DELSF+ GDI+   +++  E GW  G L G+ G +P +YVE
Sbjct: 1  PVRALYDYEGQESDELSFKAGDILT-KLEEEDEQGWCKGRLDGRVGLYPANYVE 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+Y +  +   +LSF+ GDII++  ++  +  W  GE  G+ G+FP SYV+
Sbjct: 3  KALYNYEGKEPGDLSFKKGDIILL--RKRIDENWYHGECNGKQGFFPASYVQ 52

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 2/47 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT-IGDRTGLFPS 151
           +A Y Y + EP +L+F + ++I V +K +D WW G   G + GL PS
Sbjct: 1   VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRLKGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 5/57 (8%)

Query: 42 RAIYEFVSRN-GDELSFQPGDIIMVPVK---QNAEPGWLAGELR-GQTGWFPESYVE 93
          RA+Y+F   N   ELS + GDI+ V  K      +  W  G  R G+ GWFP +YVE
Sbjct: 3  RALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYVE 59

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 24/57 (42%), Positives = 36/57 (63%), Gaps = 5/57 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           A  L P+ A S+++LSL +G +I IR++    W+EGE        +VG FPASYV++
Sbjct: 2   ARALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNG-----RVGIFPASYVEI 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 51.9 bits (125), Expect = 2e-09
 Identities = 19/55 (34%), Positives = 30/55 (54%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           +   L  +T  S  QLS   G +I +  K  +GWW+G + +   K + GWFP++Y
Sbjct: 1   VVVALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 51.7 bits (124), Expect = 3e-09
 Identities = 24/52 (46%), Positives = 36/52 (69%), Gaps = 2/52 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          + RA+Y+F   N DELSF+ GDII      + E  W++GELRG++G FP+++
Sbjct: 1  KARALYDFTGENEDELSFKAGDIITELESIDEE--WMSGELRGKSGIFPKNF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 51.7 bits (125), Expect = 3e-09
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
            R I+++V+ + +ELS + GD++ V + ++   GW  GE  G+ G  P SYVE 
Sbjct: 1  YGRVIFDYVATDPNELSLKKGDVVKV-LDKDD-NGWWEGERGGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 51.3 bits (124), Expect = 3e-09
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYVVP 156
           Y    + Y +T+P +L+  + +V+ V  K+ N WW G  G R GL PS+YV  
Sbjct: 1   YGRVIFDYVATDPNELSLKKGDVVKVLDKDDNGWWEGERGGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 51.6 bits (124), Expect = 4e-09
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LR-GQTGWFPESYVE 93
           ++ + ++  DEL+ + GD++ V  K     GW  GE LR G+ GWFP SY E
Sbjct: 4  CVHAYTAQQPDELTLEEGDVVNVLRKMP--DGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 51.5 bits (123), Expect = 4e-09
 Identities = 24/52 (46%), Positives = 35/52 (67%), Gaps = 1/52 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A Y+F +R+  ELS + GDII +  K+  + GW  GE+ G+ GWFP +YVE
Sbjct: 3  KARYDFCARDRSELSLKEGDIIKILNKK-GQQGWWRGEIYGRVGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 51.2 bits (123), Expect = 5e-09
 Identities = 20/48 (41%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           A + ++ T   +L+F++ ++I VT+  E  WW GT+  +TG FPSNYV
Sbjct: 4   AKFNFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGKTGWFPSNYV 51

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 50.8 bits (122), Expect = 7e-09
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 10/60 (16%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAG--ELRGQTGWFPESYVEP 94
          RYRA+Y++ + + DE+SFQ GD+I      N E    GW+ G  +  GQ+G  P +YVE 
Sbjct: 1  RYRAMYDYAAADDDEVSFQEGDVI-----INVEIIDDGWMEGTVQRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 50.7 bits (122), Expect = 7e-09
 Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTGLFPSNYV 154
            I  + YD+ EP +LT    ++I  V K E  WW GT+  + G+FP N+V
Sbjct: 2   VIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTLNGKRGMFPDNFV 51

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 50.4 bits (121), Expect = 9e-09
 Identities = 18/48 (37%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           A Y Y+  EPGDL+F + ++I + K+ + +W+ G    + G FP++YV
Sbjct: 4   ALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGKQGFFPASYV 51

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 5/56 (8%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
             L  YTA   ++LSL  G +I + +K   GWW GEL       + G FPA+YV+ 
Sbjct: 3   KALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGEL-----NGKKGIFPATYVEE 53

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 49.9 bits (120), Expect = 1e-08
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFP 88
           A+Y++ +R  DELSF+ GDII+V  K +   GW  G L  G+ G  P
Sbjct: 1  VALYDYTAREPDELSFKKGDIIIVLEKSDD--GWWKGRLKGGKEGLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          R  A ++F     DELSF  GD+I +      E  W  GEL G+ G FP ++V
Sbjct: 1  RCVARFDFEGEQEDELSFSEGDVITLKEYVGEE--WAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A Y+F +R+  ELS   GD++ +  K +   GW  GE+ G+ GWFP +YVE
Sbjct: 5  ARYDFCARDMRELSLLKGDVVKIYTKMSTN-GWWRGEVNGRVGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 49.2 bits (118), Expect = 2e-08
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
            +  T+ ++LS  +G +I + +    GWWEG L  K      GWFP++YVK
Sbjct: 7   NFEGTNEDELSFDKGDIITVTQVVEGGWWEGTLNGK-----TGWFPSNYVK 52

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
            +  YTA   ++L+L  G ++ + +K   GW+EGE    G++   GWFP+SY 
Sbjct: 4   CVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGER---GWFPSSYT 53

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 50.0 bits (119), Expect = 2e-08
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           IA Y Y +    +L+F++ ++I V  K++ DWW G I   TGLFPSNYV
Sbjct: 4   IAMYDYTANNEDELSFSKGQLINVLNKDDPDWWQGEINGVTGLFPSNYV 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 23/54 (42%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R +A+ +F   + DEL F+  DII + + Q  E  W+ GEL G  GWFP  +VE
Sbjct: 1  RAKALLDFERHDDDELGFRKNDIITI-ISQKDEHCWV-GELNGLRGWFPAKFVE 52

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          RA + F   N DELSF  GD+I V   +  E GW  G   G+TGWFP +YV
Sbjct: 3  RAKFNFQQTNEDELSFSKGDVIHV--TRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 49.6 bits (118), Expect = 2e-08
 Identities = 22/51 (43%), Positives = 34/51 (66%), Gaps = 1/51 (1%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A Y+F +R+  ELS + GD++ +  K+  + GW  GE+ G+ GWFP +YVE
Sbjct: 4  ARYDFCARDMRELSLKEGDVVKIYNKKGQQ-GWWRGEINGRIGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 6/53 (11%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRT-----GLFPSNY 153
           +A Y +       L+F   ++IYV  K  + WW G I   +     G FPSNY
Sbjct: 3   VALYDFTPKSKNQLSFKAGDIIYVLNKDPSGWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A Y +++ E  +L FN  +VI V    N  WW G +  + GLFP+NYV P
Sbjct: 4   ALYDFEALEDDELGFNSGDVIEVLDSSNPSWWKGRLHGKLGLFPANYVAP 53

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 48.4 bits (116), Expect = 4e-08
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
              +++ +   DEL+ + GDII   VK+  E GW  G L G+ G FP+++V+
Sbjct: 2  VIVEFDYDAEEPDELTLKVGDII-TNVKKMEE-GWWEGTLNGKRGMFPDNFVK 52

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 48.4 bits (115), Expect = 4e-08
 Identities = 23/51 (45%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A+Y++ + N DELSF  G +I V  K +  P W  GE+ G TG FP +YV+
Sbjct: 5  AMYDYTANNEDELSFSKGQLINVLNKDD--PDWWQGEINGVTGLFPSNYVK 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 48.7 bits (116), Expect = 4e-08
 Identities = 21/48 (43%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
           A Y YD+ E  +L+F   D++I +   ++DWW G      GLFPSNYV
Sbjct: 4   ALYDYDAAEDNELSFFENDKIINIEFVDDDWWLGECHGSRGLFPSNYV 51

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
            Y+A Y +   E  DL     + I +    N DWW G I DR G FP+N+V
Sbjct: 1   TYVALYKFKPQENEDLEMRPGDKITLLDDSNEDWWKGKIEDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 7/59 (11%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYVKV 277
           A VL  Y A + ++L+L  G ++ I  K     GWW+GEL  K      G FP ++V+ 
Sbjct: 2   ARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGK-----RGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 48.0 bits (115), Expect = 5e-08
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
             V   Y A   ++L+L  G +I   KK   GWWEG L   GK+   G FP ++VKV
Sbjct: 2   VIVEFDYDAEEPDELTLKVGDIITNVKKMEEGWWEGTL--NGKR---GMFPDNFVKV 53

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVV 155
           Y++A Y + + E  DL F+  E I V    N+ WW G IG++TG FP N+++
Sbjct: 1   YFVALYRFKALEKDDLDFHPGERITVIDDSNEEWWRGKIGEKTGYFPMNFII 52

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGDRTGLFPSNYV 154
           A Y Y +    +L+    ++I V  K+++ WW G +  + G+FP+ YV
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDGWWLGELNGKKGIFPATYV 51

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 48.1 bits (115), Expect = 6e-08
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 4/54 (7%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYV 92
             A+Y + ++  + LSF  GDII V  +Q     W  GEL  G+ GWFP+SYV
Sbjct: 1  TATALYPWRAKKENHLSFAKGDIITVLEQQEM---WWFGELEGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 47.9 bits (114), Expect = 7e-08
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
             +A + Y++++P DL F + +VI V  K N DW  G    + G+FPS +V  
Sbjct: 1   QVVALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGKIGIFPSAFVED 53

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 47.9 bits (114), Expect = 7e-08
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +A+++F  +   EL F+ GD I   V  N++P W  G   GQTG FP +YV P
Sbjct: 3  QALFDFDPQEDGELGFRRGDFI--EVMDNSDPNWWKGACHGQTGMFPRNYVTP 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 48.0 bits (114), Expect = 8e-08
 Identities = 18/52 (34%), Positives = 34/52 (65%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + ++ + ++N DEL+ + GDI+ +  K   + GW  GEL G+ G FP+++V+
Sbjct: 3  KVLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFVK 54

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212714 cd11780, SH3_Sorbs_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 47.7 bits (114), Expect = 8e-08
 Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG--ELRGQTGWFPESYVEP 94
          RYRA+Y +  +N DEL  + GDI  V V +  + GW  G  E  G  G FP +YV  
Sbjct: 1  RYRALYSYTPQNEDELELREGDI--VYVMEKCDDGWFVGTSERTGLFGTFPGNYVAR 55

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the third SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 47.6 bits (113), Expect = 8e-08
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           +Y++ ++N DEL+F  G II V  K+  +P W  GEL GQ G FP +YV+
Sbjct: 5  GMYDYTAQNDDELAFSKGQIINVLNKE--DPDWWKGELNGQVGLFPSNYVK 53

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 47.5 bits (113), Expect = 9e-08
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          RA+Y+F +   DEL F  GD+I   V  ++ P W  G L G+ G FP +YV P
Sbjct: 3  RALYDFEALEDDELGFNSGDVI--EVLDSSNPSWWKGRLHGKLGLFPANYVAP 53

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 47.7 bits (113), Expect = 9e-08
 Identities = 27/57 (47%), Positives = 38/57 (66%), Gaps = 4/57 (7%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG--ELRGQTGWFPESYVE 93
          +RYRA+Y++ + + DE+SFQ GD I V V+Q  + GW+ G  E  G TG  P +YVE
Sbjct: 3  KRYRAVYDYNAADEDEVSFQDGDTI-VNVQQ-IDDGWMYGTVERTGDTGMLPANYVE 57

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIY--VTKKENDWWTGTIGDRTGLFPSNYVVP 156
           A Y   + +  +L+F   ++I       E  W  GT+  RTGL P NYV  
Sbjct: 4   ALYACKAEDESELSFEPGQIITNVQPSDEPGWLEGTLNGRTGLIPENYVEF 54

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 22/48 (45%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           A + +  T   +L+F++ +VI+VT+ E   WW GT   RTG FPSNYV
Sbjct: 4   AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 51

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 2/52 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          A++ + +   ++L FQ GD+I+V  K N +  WL G+ +G+ G FP ++VE 
Sbjct: 4  ALFSYEASQPEDLEFQKGDVILVLSKVNED--WLEGQCKGKIGIFPSAFVED 53

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 47.6 bits (113), Expect = 1e-07
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           Y+A Y +   E  DL     + + V    N DWW G  GDR G FP+N+V
Sbjct: 2   YVALYKFLPQENNDLPLQPGDRVMVVDDSNEDWWKGKSGDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 21/51 (41%), Positives = 31/51 (60%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A Y F +R+  ELS + GD++ +  +   + GW  GE  G+ GWFP +YVE
Sbjct: 5  ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 55

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           A Y Y+  EPGDL F++ ++I + ++ + +W+ G +    G FP+N+V
Sbjct: 5   ALYNYEGKEPGDLKFSKGDIIILRRQVDENWYHGEVNGIHGFFPTNFV 52

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A + F   N DELS   GDII V   +  E GW  G L G+TGWFP +YV 
Sbjct: 5  KARFNFKQTNEDELSVCKGDIIYV--TRVEEGGWWEGTLNGKTGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 47.3 bits (113), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGD-RTGLFPSNYV 154
            A Y Y + E  +++F + ++I  + + +  WW G     + GLFP+NYV
Sbjct: 3   KALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVNAKGQKGLFPANYV 52

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212997 cd12064, SH3_GRAF, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 24/55 (43%), Positives = 33/55 (60%), Gaps = 1/55 (1%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R+ +A+Y   + +  ELSF  G  +   V  + EPGWL G L G+TG  PE+YVE
Sbjct: 1  RKAKALYACKAEHDSELSFTAG-TVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 54

GRAF, also called Rho GTPase activating protein 26 (ARHGAP26), Oligophrenin-1-like (OPHN1L) or GRAF1, is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. It is essential for the major clathrin-independent endocytic pathway mediated by pleiomorphic membranes. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212829 cd11896, SH3_SNX33, Src Homology 3 domain of Sorting Nexin 33

 Score = 46.9 bits (111), Expect = 1e-07
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVE 93
          + RA+Y F S N +E++ Q  + +++   +N+  GWL G+  RG+TG FP SYVE
Sbjct: 1  KARALYSFQSENKEEINIQENEELVI-FSENSLDGWLQGQNSRGETGLFPASYVE 54

SNX33 interacts with Wiskott-Aldrich syndrome protein (WASP) and plays a role in the maintenance of cell shape and cell cycle progression. It modulates the shedding and endocytosis of cellular prion protein (PrP(c)) and amyloid precursor protein (APP). SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX33 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 13/55 (23%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYVVP 156
                + Y++    +LT  + +++ +  K+ +   WW G +  + G+FP N+V P
Sbjct: 1   KARVLFDYEAENEDELTLREGDIVTILSKDCEDKGWWKGELNGKRGVFPDNFVEP 55

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R+ + ++E+V +N DEL  + GDII   + +  E GW +G L G++G FP ++V+
Sbjct: 1  RQCKVLFEYVPQNEDELELKVGDII--DINEEVEEGWWSGTLNGKSGLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A+Y F +   DEL FQ GDI+ + +    +  W   EL+G+ G+ P++Y++
Sbjct: 4  ALYSFQATESDELPFQKGDILKI-LNMEDDQNWYKAELQGREGYIPKNYIK 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-----WWTGTIGDRTGLFPS 151
           A Y Y++    +L+F +  +I + +K+++     WW G    R G+FPS
Sbjct: 4   ALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPS 52

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 46.6 bits (111), Expect = 2e-07
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGD-----RTGLFPSNYV 154
            A YPY+S    DL F+  ++I VT++E  DW+ G   D     + G+FP N+V
Sbjct: 5   KALYPYESDHEDDLNFDVGQLITVTEEEDADWYFGEYVDSNGNTKEGIFPKNFV 58

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 21/49 (42%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          Y++ + + DEL+ + G+II   VK+  E GWL GEL G+ G FP+++V+
Sbjct: 6  YDYDAVHEDELTIRVGEIIR-NVKKLEEEGWLEGELNGRRGMFPDNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 46.3 bits (110), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +A Y+F + +  +LSF+ GDII   V    +P W  G + G+ G+FP +YV P
Sbjct: 3  QAQYDFSAEDPSQLSFRRGDII--EVLDCPDPNWWRGRISGRVGFFPRNYVHP 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 2/51 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          AIY++     DELSFQ G II V +K+N + GW  G + G TG FP +YVE
Sbjct: 7  AIYDYTKDKEDELSFQEGAIIYV-IKKN-DDGWYEGVMNGVTGLFPGNYVE 55

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 46.0 bits (110), Expect = 3e-07
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
             L  YTA   ++LS  +G +I++ +K+  GWW+G L    K  + G  P+
Sbjct: 1   VALYDYTAREPDELSFKKGDIIIVLEKSDDGWWKGRL----KGGKEGLIPS 47

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 46.2 bits (110), Expect = 3e-07
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           AT L P+ A     LS ++G +I + ++    WW GEL+      + GWFP SYVK
Sbjct: 2   ATALYPWRAKKENHLSFAKGDIITVLEQQEM-WWFGELE----GGEEGWFPKSYVK 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 46.1 bits (109), Expect = 3e-07
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           I  Y Y +    +L F++ ++I V  KE+ DWW G +  + GLFPSNYV
Sbjct: 4   IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGELNGQVGLFPSNYV 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVK--QNAEPGWLAGELRGQT-GWFPESYVE 93
          RA Y+FV+ + DELSF+ GD + +  K  Q    GWL   + GQ  G  P +YV+
Sbjct: 3  RAEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPANYVK 57

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 45.9 bits (109), Expect = 3e-07
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 6/54 (11%)

Query: 44 IYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR---GQTGWFPESYVEP 94
          I  + ++  DEL+ +  DIIMV  +Q +  GWL G +R   G+ GWFP+S+VE 
Sbjct: 5  IRSYKAQENDELTLEKADIIMV--RQQSSDGWLEG-VRLSDGERGWFPQSHVEE 55

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 45.5 bits (108), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           L PYTA + ++LS  +G +I +  K    WW GEL       Q G FP++YV+ 
Sbjct: 5   LFPYTAQNEDELSFQKGDIINVLSKDDPDWWRGELNG-----QTGLFPSNYVEP 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYVVP 156
           Y +A   Y + +   L+F++ +VI +  KE      W  GT+  R+G FP  YV P
Sbjct: 1   YVVAVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEYVQP 56

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           A  L  Y       LS  +G +I++RK+    W+ GE   K      G+FPASYV+V
Sbjct: 2   AKALYNYEGKEPGDLSFKKGDIILLRKRIDENWYHGECNGK-----QGFFPASYVQV 53

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-----RGQTGWFPESY 91
           A+Y+F  ++ ++LSF+ GDII V  K  +  GW  G +     + + GWFP +Y
Sbjct: 3  VALYDFTPKSKNQLSFKAGDIIYVLNKDPS--GWWDGVIISSSGKVKRGWFPSNY 55

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A + +D  E G+L F + + I V    + +WW G    +TG+FP NYV P
Sbjct: 4   ALFDFDPQEDGELGFRRGDFIEVMDNSDPNWWKGACHGQTGMFPRNYVTP 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
               +A + AT   QLS   G  +++ +K +  WW  E          G+ PAS++
Sbjct: 1   EYVAIADFVATDDSQLSFESGDKLLVLRKPSVDWWWAEHNG-----CCGYIPASHL 51

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 46.0 bits (109), Expect = 4e-07
 Identities = 22/54 (40%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 40 RYRAIYEFVSRNGDE-LSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
            R +Y F      + LSF+ G++I V   Q  + GW  GE  G  GWFP SYV
Sbjct: 1  LCRTLYAFTGEQHQQGLSFEAGELIRV--LQAPDGGWWEGEKDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 45.7 bits (109), Expect = 4e-07
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 5/49 (10%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           Y A   ++LSL +G  +++ +K++ GWW GE        QVGWFP++YV
Sbjct: 8   YEAQREDELSLRKGDRVLVLEKSSDGWWRGECNG-----QVGWFPSNYV 51

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R  A+++F   +  EL+F+ GD+I +  + N +  WL G +RG TG FP S+V+
Sbjct: 1  RAEALFDFTGNSKLELNFKAGDVIFLLSRVNKD--WLEGTVRGATGIFPLSFVK 52

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 45.7 bits (108), Expect = 5e-07
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 5/51 (9%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           YTA + ++L+ S+GQ+I +  K    WW+GEL       QVG FP++YVK+
Sbjct: 9   YTAQNDDELAFSKGQIINVLNKEDPDWWKGELNG-----QVGLFPSNYVKL 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           E  +A Y Y   +  +L+F +  +IYV KK +D W+ G +   TGLFP NYV
Sbjct: 3   EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYV 54

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 45.4 bits (108), Expect = 5e-07
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          + R + +  ++  +EL  + GD++ +      + GW  GEL G+ G FPE +V
Sbjct: 1  QARVLQDLSAQLDEELDLREGDVVTI--TGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 45.8 bits (108), Expect = 5e-07
 Identities = 23/60 (38%), Positives = 38/60 (63%), Gaps = 10/60 (16%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAGELR--GQTGWFPESYVE 93
          R YRA+Y++ +++ DE+SF+ GD I      N +P   GW+ G ++  G+TG  P +Y+E
Sbjct: 1  RTYRAMYDYSAQDEDEVSFRDGDYI-----VNVQPIDEGWMYGTVQRTGRTGMLPANYIE 55

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYV 154
             A YP+ + +   L+F + ++I V +++  WW G + G   G FP +YV
Sbjct: 2   ATALYPWRAKKENHLSFAKGDIITVLEQQEMWWFGELEGGEEGWFPKSYV 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212847 cd11914, SH3_BAIAP2L2, Src Homology 3 domain of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2

 Score = 45.6 bits (108), Expect = 6e-07
 Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 4/59 (6%)

Query: 39 RRYRAIYEF-VSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT--GWFPESYVEP 94
          RR RAI       N   L F  GDII V V + A  GWL G+L G +  GWFPE+YV+ 
Sbjct: 1  RRVRAIVSHPAGSNPTLLRFNRGDIITVLVPE-ARNGWLYGKLEGSSRQGWFPEAYVKA 58

BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. It contains an N-terminal IMD or Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGTIGDRTGLFPSNYVVP 156
            + A + Y+++   +LT  + + + V  K++       WWTG I DR G+FPSNYV  
Sbjct: 1   VWTAVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 45.3 bits (107), Expect = 6e-07
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 2/56 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
          R RA+Y++  +  DELSF+ GD  +  ++   E GW  G L  GQ G +P +YVEP
Sbjct: 2  RVRALYDYDGQEQDELSFKAGD-ELTKLEDEDEQGWCKGRLDSGQVGLYPANYVEP 56

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 45.2 bits (107), Expect = 6e-07
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTG-LFPSNYV 154
           A Y Y +    +L+F +  +I+ V+K+   WW G  G +    FPSNYV
Sbjct: 4   ALYDYRAKRSDELSFCKGALIHNVSKETGGWWKGDYGGKVQHYFPSNYV 52

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 9/62 (14%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMV-----PVKQNAEPGWLAG--ELRGQTGWFPESYV 92
          + RA +++ + + DEL+F+ GD+I+V     P +Q  + GWL G  E  G  G FPE++ 
Sbjct: 4  KVRATHDYTAEDTDELTFEKGDVILVIPFDDPEEQ--DEGWLMGVKESTGCRGVFPENFT 61

Query: 93 EP 94
          E 
Sbjct: 62 ER 63

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 45.4 bits (108), Expect = 6e-07
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 3/58 (5%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 94
           R +A+Y   +    +LSF+ GD+I +   +  + GW  GE    G+ GWFP +Y EP
Sbjct: 1  PRVKALYPHAAGGETQLSFEEGDVITLLGPEPRD-GWHYGENERSGRRGWFPIAYTEP 57

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R + ++ +  +N DEL  + GD I V + +  E GW  G+L G+ G FP ++V+
Sbjct: 1  RCKVLFSYTPQNEDELELKVGDTIEV-LGE-VEEGWWEGKLNGKVGVFPSNFVK 52

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 45.2 bits (107), Expect = 7e-07
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A Y + + +P  L+F + ++I V    + +WW G I  R G FP NYV P
Sbjct: 4   AQYDFSAEDPSQLSFRRGDIIEVLDCPDPNWWRGRISGRVGFFPRNYVHP 53

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI---GDRTGLFPSNY 153
           A Y   +    +LTF++ E+I VT +E+ +WW G I     R G+FP ++
Sbjct: 4   ALYDCQADNDDELTFSEGEIIVVTGEEDDEWWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 45.0 bits (107), Expect = 7e-07
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
           A ++F +   DELSF+ G I+ V +    +P W   EL G+ G  P++Y+
Sbjct: 3  VAKHDFKATAEDELSFKKGSILKV-LNMEDDPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212998 cd12065, SH3_GRAF2, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 2

 Score = 45.0 bits (106), Expect = 7e-07
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+Y   + +  ELSF+ G I    V  + EPGWL G L G+ G  PE+YVE
Sbjct: 3  KAVYPCEAEHSSELSFEVGAIFE-DVTLSREPGWLEGTLNGKRGLIPENYVE 53

GRAF2, also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA. It regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle, and is involved in alpha-catenin recruitment at cell-cell junctions. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 45.1 bits (107), Expect = 7e-07
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A+Y++ + + DE+SF P DII   ++   E GW  G  RG+ G FP +YVE
Sbjct: 4  ALYDYQAADDDEISFDPDDII-TNIEMIDE-GWWRGVCRGKYGLFPANYVE 52

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 44.8 bits (106), Expect = 8e-07
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVV 155
           EY  A + Y+ T   +L F + E+I +  K   E  WW G +  + G+FP N+V 
Sbjct: 2   EYCKALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKEGVFPDNFVS 56

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 44.7 bits (106), Expect = 9e-07
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
            Y A Y +++  P +++F   ++I V +    E  W  G +  +TG FP+NYV
Sbjct: 1   KYRALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGKTGWFPANYV 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 44.8 bits (106), Expect = 9e-07
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 7/55 (12%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYV 275
           VL  Y   + ++L+L +G +I +  K T   GWWEGEL  +      G+FP ++V
Sbjct: 4   VLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGR-----RGFFPDNFV 53

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 45.0 bits (106), Expect = 9e-07
 Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 2/51 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          AIY++     DELSF  G II V +K+N + GW  G   G TG FP +YVE
Sbjct: 4  AIYDYSKDKDDELSFMEGAIIYV-IKKN-DDGWYEGVCNGVTGLFPGNYVE 52

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 7/57 (12%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPESYVE 93
          + I  F +   ++LS   G +++  V++ +  GW  GEL+      Q GWFP +YV+
Sbjct: 3  QVIAPFTATAENQLSLAVGQLVL--VRKKSPSGWWEGELQARGKKRQIGWFPANYVK 57

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 154
           A Y ++    G+L F + ++I +T +  EN W+ G +  ++G FP NYV
Sbjct: 5   ALYDFEPENEGELGFKEGDIITLTNQIDEN-WYEGMVNGQSGFFPVNYV 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 45.0 bits (106), Expect = 1e-06
 Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
           A + +  T   +L+  + ++IYVT+ +E  WW GT+  +TG FPSNYV
Sbjct: 6   ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGKTGWFPSNYV 53

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 156
            +  + Y++    +L+  + + + V +K +D WW G    + G FPSNYV  
Sbjct: 2   AVVKFNYEAQREDELSLRKGDRVLVLEKSSDGWWRGECNGQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           +A Y Y   +  +L+F +  +IYV KK +D W+ G     TGLFP NYV
Sbjct: 3   VAIYDYSKDKDDELSFMEGAIIYVIKKNDDGWYEGVCNGVTGLFPGNYV 51

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 19/54 (35%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          R+ RA+Y+F +   +EL+F+ G+II   V  +++P W  G      G FP ++V
Sbjct: 1  RKVRALYDFEAAEDNELTFKAGEIIT--VLDDSDPNWWKGSNHRGEGLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 44.8 bits (106), Expect = 1e-06
 Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 6/57 (10%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGTIGDRTGLFPSNYVVP 156
           + A + YD+    +LT  + + + V  K+        WWTG IGD+ G+FPSNYV P
Sbjct: 2   WTALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYVAP 58

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 44.6 bits (105), Expect = 1e-06
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R  RA ++F ++   EL  Q GDI+ +   +  +  W  GE  G+ G FP SY+E
Sbjct: 1  RPARAKFDFKAQTLKELPLQKGDIVYI--YKQIDQNWYEGEHHGRVGIFPRSYIE 53

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 17/52 (32%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          A++ + ++  ++L F+ GD I V  + N    WL G   G+ G FP+ +V P
Sbjct: 4  ALHRYEAQGPEDLGFREGDTIDVLSEVNEA--WLEGHSDGRVGIFPKCFVVP 53

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213001 cd12068, SH3_MYO15B, Src Homology 3 domain of Myosin XVb

 Score = 44.5 bits (105), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 28/52 (53%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          A+  +++ +   LSF  GD+I +      EPGW  G   G++G FP   V+P
Sbjct: 4  ALRSYITDDKSLLSFHRGDLIKLLPMAGLEPGWQFGSTGGRSGLFPADIVQP 55

Myosin XVb, also called KIAA1783, was named based on its similarity with myosin XVa. It is a transcribed and unprocessed pseudogene whose predicted amino acid sequence contains mutated or deleted amino acid residues that are normally conserved and important for myosin function. The related myosin XVa is important for normal growth of mechanosensory stereocilia of inner ear hair cells. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 21/50 (42%), Positives = 30/50 (60%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          A+Y F  +   +LSFQ GD I V  + +++  W  G LRG+ G FP +YV
Sbjct: 4  ALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRLRGRVGIFPANYV 53

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           YTA + ++LS S+GQLI +  K    WW+GE+         G FP++YVK+
Sbjct: 9   YTANNEDELSFSKGQLINVLNKDDPDWWQGEING-----VTGLFPSNYVKM 54

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAE---PGWLAGELRGQTGWFPESYVE 93
          +A+Y++ +   +ELSF   D I+     N E     W  GE  G  G FP +YVE
Sbjct: 3  KALYDYDAAEDNELSFFENDKII-----NIEFVDDDWWLGECHGSRGLFPSNYVE 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
               + + ++  DELS + GD ++V  K  +  GW  GE  GQ GWFP +YV  
Sbjct: 1  PAVVKFNYEAQREDELSLRKGDRVLVLEK--SSDGWWRGECNGQVGWFPSNYVTE 53

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGDRTGLFPSNYV 154
           +A Y Y + +  +++F+ D++I  +   +  WW G    + GLFP+NYV
Sbjct: 3   VALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVCRGKYGLFPANYV 51

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           +A + Y++  P DL F + + I V  + N  W  G    R G+FP  +VVP
Sbjct: 3   VALHRYEAQGPEDLGFREGDTIDVLSEVNEAWLEGHSDGRVGIFPKCFVVP 53

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 23/54 (42%), Positives = 31/54 (57%), Gaps = 6/54 (11%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQTGWFPESYVE 93
          RA Y F +  G ELSF+ GD+I +   V +N    W  G + G+ G FP SYV+
Sbjct: 3  RAKYNFNADTGVELSFRKGDVITLTRRVDEN----WYEGRIGGRQGIFPVSYVQ 52

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           A Y Y+  EPGDL FN+ ++I + +K ++ W+ G +    G  P++Y+
Sbjct: 5   ALYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELNGCHGFLPASYI 52

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          A+Y++ ++  DE+S + GD I V ++ +   GW  GE+ G  G FP SY
Sbjct: 4  ALYDYEAQGDDEISIRVGDRIAV-IRGDDGSGWTYGEINGVKGLFPTSY 51

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          A+++ V+ + +EL F+ GD+I V    + +  W  G +R + GWFP S+V
Sbjct: 4  ALWDHVTMDPEELGFKAGDVIEVLDMSDKD--WWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          RA+Y+F ++   ELSF+ GD + +  K   +  W  GE  G+ G FP SYVE
Sbjct: 4  RAVYDFKAQTSKELSFKKGDTVYILRK--IDQNWYEGEHHGRVGIFPISYVE 53

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          A+Y F +   +EL F+ GD I +      E GWL GEL+G+ G FP  +
Sbjct: 4  ALYRFQALEPNELDFEVGDRIRI--IATLEDGWLEGELKGRRGIFPHRF 50

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYV 92
          A+Y++ +   DEL+   GDII V  K N    W  G L  GQ G+FP +YV
Sbjct: 4  ALYDYTANRSDELTIHRGDIIRVLYKDN--DNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVE 93
          +A+Y++ +   +E+SF  GDII   ++Q  E GW  G    GQ G FP +YVE
Sbjct: 3  KALYDYQAAEDNEISFVEGDII-TQIEQIDE-GWWLGVNAKGQKGLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESY 91
          R RA+Y+  + N DEL+F  G+II+V  +++ E  W  G + G     G FP S+
Sbjct: 1  RVRALYDCQADNDDELTFSEGEIIVVTGEEDDE--WWEGHIEGDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 43.3 bits (102), Expect = 3e-06
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           L  YTA  S++L++ RG +I +  K    WW G L   G   Q G+FPA+YV
Sbjct: 5   LYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSL-VNG---QQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 20/52 (38%), Positives = 31/52 (59%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           A+Y+F      +L+FQ GDII +  K +++  W  G + G+ G FP +YVE
Sbjct: 3  VALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGREGIFPANYVE 54

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 42.7 bits (101), Expect = 4e-06
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
            L  YTA   ++LS   G +I + KK   GW+EG L         G FP +YV
Sbjct: 4   ALYDYTADKDDELSFQEGDIIYVTKKNDDGWYEGVLNGV-----TGLFPGNYV 51

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 227 YTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           + A    +LSL  G +I I  KK   GWW GE+  +     VGWFPA+YV+
Sbjct: 8   FCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGR-----VGWFPANYVE 53

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 42.8 bits (101), Expect = 4e-06
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           A Y +++ E  +LTF   E+I V    + +WW G+     GLFP+N+V
Sbjct: 5   ALYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGSNHRGEGLFPANFV 52

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 22/58 (37%), Positives = 38/58 (65%), Gaps = 5/58 (8%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           E  TV+ PYTA   ++++L +G ++ + +K   GWW  +++ +GK+   GW PASY+K
Sbjct: 1   EKYTVIYPYTARDQDEINLEKGAVVEVIQKNLEGWW--KIRYQGKE---GWAPASYLK 53

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVE 93
          R RA+Y++  +  DELSF+ G+ ++  + +  E GW  G L  G+ G +P +YVE
Sbjct: 3  RVRALYDYTGQEADELSFKAGEELL-KIGEEDEQGWCKGRLLSGRIGLYPANYVE 56

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 42.9 bits (101), Expect = 4e-06
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          A+Y+F     ++LSFQ GD I+V    +AE  W  G L G+ G FP ++
Sbjct: 4  ALYDFTGETEEDLSFQRGDRILVTEHLDAE--WSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          R+ RAIY+F +   +EL+F+ GDII   +  +++P W  GE    TG FP ++V
Sbjct: 1  RKVRAIYDFEAAEDNELTFKAGDII--TILDDSDPNWWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 42.8 bits (101), Expect = 5e-06
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYVVP 156
           Y    + Y+   P +L   + +VI V  KE +   WW G +  R G FP N+V+P
Sbjct: 1   YCRVLFDYNPVAPDELALKKGDVIEVISKETEDEGWWEGELNGRRGFFPDNFVMP 55

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
            A Y +++    +L+F + +VI +T++ ++ W+ G IG R G+FP +YV
Sbjct: 3   RAKYNFNADTGVELSFRKGDVITLTRRVDENWYEGRIGGRQGIFPVSYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 5/55 (9%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           A V   YTA   ++LSL +G  +++ +K + GWW G         QVGWFP++YV
Sbjct: 4   AYVKFNYTAEREDELSLVKGTKVIVMEKCSDGWWRGSYNG-----QVGWFPSNYV 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           A Y +++ E  +LTF   E+I V    + +WW G      GLFPSN+V
Sbjct: 6   ALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 43 AIYEFVSRNGDELSFQPGDII----MVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A+Y++     DE+SF P + I    MV      + GW  G   G  G FP +YVE
Sbjct: 5  ALYDYQGEGDDEISFDPQETITDIEMV------DEGWWKGTCHGHRGLFPANYVE 53

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212725 cd11791, SH3_UBASH3, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing proteins, also called TULA (T cell Ubiquitin LigAnd) family of proteins

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQ--NAEPGWLAG--ELRGQTGWFPESYVE 93
           R +Y +  +  DEL   PGD I V  ++  ++  GW+ G   L G +G  PE+Y E
Sbjct: 2  LRVLYPYTPQEEDELELVPGDYIYVSPEELDSSSDGWVEGTSWLTGCSGLLPENYTE 58

UBASH3 or TULA proteins are also referred to as Suppressor of T cell receptor Signaling (STS) proteins. They contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. In some vertebrates, there are two TULA family proteins, called UBASH3A (also called TULA or STS-2) and UBASH3B (also called TULA-2 or STS-1), which show partly overlapping as well as distinct functions. UBASH3B is widely expressed while UBASH3A is only found in lymphoid cells. UBASH3A facilitates apoptosis induced in T cells through its interaction with the apoptosis-inducing factor AIF. UBASH3B is an active phosphatase while UBASH3A is not. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212830 cd11897, SH3_SNX18, Src Homology 3 domain of Sorting nexin 18

 Score = 42.7 bits (100), Expect = 5e-06
 Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG-ELRGQTGWFPESYVE 93
          R RA+Y+F S N  E+S +  +++ +  +Q+ E GWL G   RG  G FP SYVE
Sbjct: 1  RARALYDFRSENPGEISLREHEVLSLCSEQDIE-GWLEGVNSRGDRGLFPASYVE 54

SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. It binds FIP5 and is required for apical lumen formation. It may also play a role in axonal elongation. SNXs are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNX18 also contains BAR and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +  T+ ++LS S+G +I + +    GWWEG    +      GWFP++YV+
Sbjct: 8   FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNYVR 52

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 2/53 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          Y A+Y+F+ +  ++L  QPGD +MV    N +  W  G+   + G+FP ++V+
Sbjct: 2  YVALYKFLPQENNDLPLQPGDRVMVVDDSNED--WWKGKSGDRVGFFPANFVQ 52

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 42.8 bits (101), Expect = 6e-06
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 2/54 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQN--AEPGWLAGELRGQTGWFPESYVE 93
          RA+Y++ +++ +ELSF  G II +  K +   + GW  GE  G+ G FP   VE
Sbjct: 3  RALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFPSLVVE 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 14/37 (37%), Positives = 26/37 (70%), Gaps = 1/37 (2%)

Query: 119 DLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           DL+ N  E++Y+ +K + +W+ G   + TG+FP+N+V
Sbjct: 15  DLSLNSGEIVYLLEKIDTEWYRGKCKNTTGIFPANHV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 42.3 bits (100), Expect = 6e-06
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDR-TGLFPSNYV 154
           A Y Y +  P +L+F +  +I  V K++  WW G  G +    FP+NYV
Sbjct: 4   ALYDYRAQRPDELSFCKHAIITNVEKEDGGWWRGDYGGKKQKWFPANYV 52

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 42.2 bits (100), Expect = 6e-06
 Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 156
           Y+A   Y++    +++  + EV+ V +K ++ WW    GD+ G  P++Y+ P
Sbjct: 2   YVAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212873 cd11940, SH3_ARHGEF5_19, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF5 and ARHGEF19

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 18/50 (36%), Positives = 34/50 (68%), Gaps = 3/50 (6%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           Y A  +++L+L +  +IM+R++++ GW EG   + G++   GWFP S+V+
Sbjct: 8   YKAQENDELTLEKADIIMVRQQSSDGWLEGVRLSDGER---GWFPQSHVE 54

ARHGEF5, also called ephexin-3 or TIM (Transforming immortalized mammary oncogene), is a potent activator of RhoA and it plays roles in regulating cell shape, adhesion, and migration. It binds to the SH3 domain of Src and is involved in regulating Src-induced podosome formation. ARHGEF19, also called ephexin-2 or WGEF (weak-similarity GEF), is highly expressed in the intestine, liver, heart and kidney. It activates RhoA, Cdc42, and Rac 1, and has been shown to activate RhoA in the Wnt-PCP (planar cell polarity) pathway. It is involved in the regulation of cell polarity and cytoskeletal reorganization. ARHGEF5 and ARHGEF19 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           A V   Y A   ++LSL +G  + + +K + GWW G         Q+GWFP++YV
Sbjct: 3   AFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNG-----QIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 42.5 bits (100), Expect = 7e-06
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 3/54 (5%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           V+ PY   S  +L L  G ++ + KK   GW++G LQ  GK    G FP S+V+
Sbjct: 4   VIVPYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGK---TGLFPGSFVE 54

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 42.1 bits (99), Expect = 9e-06
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 4/57 (7%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          RYR I  +  ++  EL  + GDI+ V  K+  E GW  G L+  G+TG FP S+VE 
Sbjct: 1  RYRVIVPYPPQSEAELELKEGDIVFVHKKR--EDGWFKGTLQRTGKTGLFPGSFVES 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRT--GLFPSNYVVP 156
           Y A Y +  +   +L+  +D+++Y+ +KE N WW     D +  G  P+ Y+  
Sbjct: 2   YKALYDFAGSVANELSLKKDDIVYIVQKEDNGWWLAKKLDESKEGWVPAAYLEE 55

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 42.0 bits (98), Expect = 9e-06
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 3/52 (5%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+Y + ++  + L+F   D+I V  +Q+    W  GE++GQ GWFP+SYV+
Sbjct: 3  QALYPWRAKKDNHLNFNKNDVITVLEQQDM---WWFGEVQGQKGWFPKSYVK 51

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPASYVK 276
             T L  +       LS   G  I +  +T +   WWEG L     + +VG FPA+YV 
Sbjct: 1   EVTALYSFEGQQPCDLSFQAGDRITVLTRTDSQFDWWEGRL-----RGRVGIFPANYVS 54

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 6/58 (10%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           IA     + A    +LSL +G ++ I  K +T GWW GE+  +     VGWFP++YV+
Sbjct: 2   IAIARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGR-----VGWFPSTYVE 54

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          Y A+Y+F  +  ++L  +PGD I +    N +  W  G++  + G+FP ++V
Sbjct: 2  YVALYKFKPQENEDLEMRPGDKITLLDDSNED--WWKGKIEDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 7/58 (12%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           VL PY A + ++L++  G ++ +  K     GWWEGEL   G++   G FP ++VK++
Sbjct: 4   VLFPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELN--GRR---GVFPDNFVKLL 56

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +  T+ ++LS+ +G +I + +    GWWEG L  K      GWFP++YV+
Sbjct: 10  FKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGK-----TGWFPSNYVR 54

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 4/56 (7%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           A  L  Y A    ++S   G +I   ++   GWW G   AKG+K   G FPA+YV+
Sbjct: 2   AKALYDYQAAEDNEISFVEGDIITQIEQIDEGWWLGVN-AKGQK---GLFPANYVE 53

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          Y AI +FV+ +  +LSF+ GD ++V  K + +  W   E  G  G+ P S++  
Sbjct: 2  YVAIADFVATDDSQLSFESGDKLLVLRKPSVD--WWWAEHNGCCGYIPASHLHQ 53

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           A + +      +L F   +VI++  + N DW  GT+   TG+FP ++V
Sbjct: 4   ALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGATGIFPLSFV 51

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
             VL  YT  + ++L L  G  I +  +   GWWEG+L  K     VG FP+++VK 
Sbjct: 2   CKVLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGK-----VGVFPSNFVKE 53

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+Y +  +   +L F  GDII++  ++  +  W  GEL G  G+ P SY++
Sbjct: 4  KALYSYEGKEPGDLKFNKGDIIIL--RRKVDENWYHGELNGCHGFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 4/50 (8%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           Y A   ++LS  +  +I   +K   GWW G+    G K+Q  WFPA+YV+
Sbjct: 8   YRAQRPDELSFCKHAIITNVEKEDGGWWRGDY---GGKKQ-KWFPANYVE 53

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ-TGWFPESYVE 93
          +A+Y++ ++  DELSF    II    K++   GW  G+  G+   WFP +YVE
Sbjct: 3  KALYDYRAQRPDELSFCKHAIITNVEKEDG--GWWRGDYGGKKQKWFPANYVE 53

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          Y AI ++ ++  DE+S Q G++  V V +  + GW       + GW P SY+EP
Sbjct: 2  YVAIADYEAQGDDEISLQEGEV--VEVLEKNDSGWWYVRKGDKEGWVPASYLEP 53

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R  ++F +   DELSF+ GD++ +    +    W   EL G+ G+ P+++V+
Sbjct: 3  RGKFDFTASGEDELSFKKGDVLKILSSDDI---WFKAELNGEEGYVPKNFVD 51

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212849 cd11916, SH3_Sorbs1_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          Y+A+Y +  +N DEL  + GDI  V V +  + GW  G  R   Q G FP +YV+ 
Sbjct: 4  YQALYSYAPQNDDELELRDGDI--VDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKL 57

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWW------TGTIGDRTGLFPSNY 153
           Y+A Y Y++    DL+F + + + +    + DWW      TG    + G  PSNY
Sbjct: 2   YVALYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTG----KEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+  + ++  + L+F   DII V  +Q     W  GE+ G  GWFP+SYV+
Sbjct: 3  QALCSWTAKKDNHLNFSKNDIITVLEQQE---NWWFGEVHGGRGWFPKSYVK 51

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 107 IAAYPYDST---EPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNY 153
            A Y ++     E   LTF + +VI V ++  EN W  G +GD+ G+FP ++
Sbjct: 3   KALYDFEMKDEDEKDCLTFKKGDVITVIRRVDEN-WAEGRLGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           +A + Y +  P DL F+Q + I +  + N +W  G    R G+FP  + V 
Sbjct: 3   VAQHDYSAQGPEDLEFSQGDTIDILSEVNQEWLEGHCDGRIGIFPKCFAVR 53

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 21/52 (40%), Positives = 30/52 (57%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          Y+ +++    N DELSFQ GD+I +  K+    GW  GEL G  G  P+ Y+
Sbjct: 2  YQGLWDCFGDNPDELSFQRGDLIYILSKEYNMYGWWVGELNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +Y  +Y++ ++  DELS   GD++ V  K   E GW   E  GQ G  P +Y+E
Sbjct: 1  KYSVLYDYTAQEDDELSISKGDVVAVIEK--GEDGWWTVERNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 41.5 bits (97), Expect = 1e-05
 Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          YRAI ++   +  E++ + GD  +V V + +E GW   +L+ + GW P SY+EP
Sbjct: 2  YRAIADYEKSSKSEMALKTGD--VVEVVEKSENGWWFCQLKAKRGWVPASYLEP 53

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           L  Y A  S++LS  +G LI    K T GWW+G+    G K Q  +FP++YV+
Sbjct: 5   LYDYRAKRSDELSFCKGALIHNVSKETGGWWKGDY---GGKVQH-YFPSNYVE 53

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
             + Y      +L     + I V  +  + WW G +  + G+FPSN+V
Sbjct: 4   VLFSYTPQNEDELELKVGDTIEVLGEVEEGWWEGKLNGKVGVFPSNFV 51

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 2/50 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYV 154
           +A Y Y +    +LT ++ ++I V  K+ND WW G++ + + G FP+NYV
Sbjct: 3   VALYDYTANRSDELTIHRGDIIRVLYKDNDNWWFGSLVNGQQGYFPANYV 52

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 41.2 bits (96), Expect = 2e-05
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
           A YP+ + +   L FN+++VI V ++++ WW G +  + G FP +YV
Sbjct: 4   ALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYV 50

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYV 154
           +A YPYD     DL+F + E + V ++  +WW        + G  PSNYV
Sbjct: 3   VALYPYDGIHEDDLSFKKGEKLKVIEEHGEWWKARSLTTKKEGFIPSNYV 52

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 30/52 (57%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          Y+ +++      DELSF+ GD I +  K+    GW  GE++G  G  P++Y+
Sbjct: 2  YQGLWDCTGDQPDELSFKRGDTIYILSKEYNRFGWWVGEMKGTIGLVPKAYI 53

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 19/52 (36%), Positives = 29/52 (55%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          Y  +++      DELSF+ GD+I +  K+    GW  GEL G+ G  P+ Y+
Sbjct: 2  YMGLWDCSGNEPDELSFKRGDLIYIISKEYDSFGWWVGELNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +  R  ++F +++  EL+ Q GDI  V + +  +  WL GE  G+ G FP +YVE
Sbjct: 1  KAARLKFDFQAQSPKELTLQKGDI--VYIHKEVDKNWLEGEHHGRVGIFPANYVE 53

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R +A+  +   N  +L F  GD+I+  +++  +  W  GE+ G +G FP S VE
Sbjct: 2  RAKALCNYRGHNPGDLKFNKGDVIL--LRRQLDENWYLGEINGVSGIFPASSVE 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 4/57 (7%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVE 93
          + +RA+Y++ + + DE+SF+ GD I+    Q  + GW+ G ++  G+TG  P +YVE
Sbjct: 2  KSFRAMYDYRAADDDEVSFKDGDTIV--NVQTIDEGWMYGTVQRTGKTGMLPANYVE 56

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT-IGDRTGLFPSNYV 154
           Y A Y + S EP  L+F++ E   + ++ N  WW  T     TG  P+NYV
Sbjct: 2   YRALYDFKSAEPNTLSFSEGETFLLLERSNAHWWLVTNHSGETGYVPANYV 52

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 1/51 (1%)

Query: 107 IAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 156
            A + Y      +L+F + D +    +  +DWW G +  + GL P  Y+  
Sbjct: 3   TAQFDYTGRSERELSFKKGDSLTLYRQVSDDWWRGQLNGQDGLVPHKYITL 53

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 8/55 (14%)

Query: 108 AAYPYDSTEPG-DLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYV 154
           A Y +    P  +L+  + +++ V  K      +++WW G   D R G FPSNYV
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSNYV 58

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
              A + + + +P +L F   +VI V    + DWW G+I D  G FP+++V
Sbjct: 1   LAEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIRDEEGWFPASFV 51

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESY 91
          Y A+Y++ +R  D+LSF+ GD + + +  +    WLA  L  G+ G+ P +Y
Sbjct: 2  YVALYDYEARTDDDLSFKKGDRLQI-LDDSDGDWWLARHLSTGKEGYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 8/62 (12%)

Query: 40 RYRAIYEF----VSRNGD---ELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          R  A++++     S N D   ELSF+ GDII V  + + E G+  GEL GQ G  P +++
Sbjct: 1  RMVALFDYDPRESSPNVDAEVELSFRAGDIITVFGEMD-EDGFYYGELNGQRGLVPSNFL 59

Query: 93 EP 94
          E 
Sbjct: 60 EE 61

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGD-RTGLFPSNYVVP 156
           +A Y +   EPGDL   + E   V       WW     +   G  PSNYV  
Sbjct: 3   VALYDFQPIEPGDLPLEKGEEYVVLDDSNEHWWRARDKNGNEGYIPSNYVTE 54

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A Y+F +   DELSF+ GDI+ V + +  +  W   EL G+ G+ P++Y+E
Sbjct: 5  AKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIE 54

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R +  + ++ +N DEL  + GDII   V    E GW  G L G+TG FP ++++
Sbjct: 1  RCQVAFSYLPQNEDELELKVGDII--EVVGEVEEGWWEGVLNGKTGMFPSNFIK 52

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 3/54 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYVVP 156
           Y+A YPY   +P +L   + E+  VT+K  D W+ GT     ++G+FP NYV P
Sbjct: 2   YVALYPYKPQKPDELELRKGEMYTVTEKCQDGWFKGTSLRTGQSGVFPGNYVQP 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 40.7 bits (95), Expect = 3e-05
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG-ELRGQTGWFPESYVE 93
          R RA+Y++  +  DELSF+ G+ ++  V+   E GW  G    G  G +P +YVE
Sbjct: 3  RVRAVYDYTGQEPDELSFKAGEELL-KVEDEDEQGWCKGVTDGGAVGLYPANYVE 56

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           +      +L   RG +I +   +   WW+GEL     + +VG FPA+YV+ 
Sbjct: 8   FNPQEPGELEFRRGDIITVLDSSDPDWWKGEL-----RGRVGIFPANYVQP 53

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYV 275
           E    L  Y  T+ ++L    G++I+I  K T   GWW+GEL  K      G FP ++V
Sbjct: 2   EYCKALFHYEGTNEDELDFKEGEIILIISKDTGEPGWWKGELNGKE-----GVFPDNFV 55

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           Y AT   +LSL +G ++ +  K   GWWEGE     +  + G  P+SYV+ 
Sbjct: 8   YVATDPNELSLKKGDVVKVLDKDDNGWWEGE-----RGGRRGLVPSSYVEE 53

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 39.8 bits (93), Expect = 4e-05
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY 153
           +A Y +      DL+F + + I VT+  + +W  G +  R G+FP  +
Sbjct: 3   VALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGREGIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 40.4 bits (94), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 2/54 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          R+ RA+Y+F +   +EL+F+ G+II+  V  +++  W  GE     G FP ++V
Sbjct: 2  RKVRALYDFEAVEDNELTFKHGEIII--VLDDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGDRTGLFPSNYV 154
           +A Y Y      +++F+  E I  +   +  WW GT     GLFP+NYV
Sbjct: 4   VALYDYQGEGDDEISFDPQETITDIEMVDEGWWKGTCHGHRGLFPANYV 52

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          A +++  R+  ELSF+ GD +   + +     W  G+L GQ G  P  Y+  
Sbjct: 4  AQFDYTGRSERELSFKKGDSLT--LYRQVSDDWWRGQLNGQDGLVPHKYITL 53

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYVVP 156
             IA Y +  +   DL   + E + V K + +WW        + G  PSNYV  
Sbjct: 1   CVIAQYDFVPSNERDLQLKKGEKLQVLKSDGEWWLAKSLTTGKEGYIPSNYVAR 54

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212999 cd12066, SH3_GRAF3, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase 3

 Score = 40.0 bits (93), Expect = 5e-05
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+Y   + +  ELSF P   I   V  + EPGWL     G+TG  PE+YV 
Sbjct: 3  KAMYSCKAEHSHELSF-PQGAIFSNVYPSVEPGWLKATYEGKTGLVPENYVV 53

GRAF3 is also called Rho GTPase activating protein 42 (ARHGAP42) or ARHGAP10-like. Though its function has not been characterized, it may be a GAP with activity towards RhoA and Cdc42, based on its similarity to GRAF and GRAF2. It contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 3/57 (5%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNA---EPGWLAGELRGQTGWFPESYVEP 94
          + A+Y++ +   DELS + GD++ V  +  A   + GW AG++R + G FP +YV  
Sbjct: 2  WTALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHRLGIFPANYVTR 58

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 10/59 (16%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTT-----GWWEGELQAKGKKRQVGWFPASYV 275
           T L  Y A+  ++LSL RG ++ +  +        GWW G+++      ++G FPA+YV
Sbjct: 3   TALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIR-----HRLGIFPANYV 56

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRGQTGWFPESYVE 93
           A+Y F   N +ELSF+ G+ + +  K   +P W  A    G TG  P +YVE
Sbjct: 3  VALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGTTGLVPRNYVE 55

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 39.9 bits (93), Expect = 5e-05
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 5/56 (8%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESYV 92
          R +A+Y  V+ N DEL+F  G+II+V  +++ E  W  G + G+    G FP S+V
Sbjct: 1  RVKALYNCVADNPDELTFSEGEIIIVDGEEDKE--WWIGHIDGEPTRRGAFPVSFV 54

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 7/55 (12%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYV 275
            L  + A + +++S   G +I + +      GW  GEL+ K      GWFPA+YV
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDESQVAEPGWLAGELKGK-----TGWFPANYV 53

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212854 cd11921, SH3_Vinexin_1, First Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           + A S ++L+L +G ++ I K+    W EGE   +     VG FPA+YV+V+
Sbjct: 9   FQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGR-----VGIFPANYVEVL 55

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 39.5 bits (92), Expect = 6e-05
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           A   Y    PGDL FN+ +VI + ++ + +W+ G I   +G+FP++ V
Sbjct: 5   ALCNYRGHNPGDLKFNKGDVILLRRQLDENWYLGEINGVSGIFPASSV 52

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 39.9 bits (93), Expect = 6e-05
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQN-AEPGWLAGELRGQTGWFPESYVE 93
          +A+Y++  +  DELSF  G II +  K+N  + G+  GE  G+ G FP   VE
Sbjct: 3  KALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVE 55

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 39.6 bits (93), Expect = 6e-05
 Identities = 21/49 (42%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTGWFP 88
          RA+Y+ V+ + DEL+F+ GDI+ V ++QN     GW    LRG+ G  P
Sbjct: 3  RALYDNVAESPDELAFRRGDILTV-LEQNTAGLEGWWLCSLRGRQGIAP 50

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 14/49 (28%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
            A YP+ +    +L+  + ++IY+ ++ + +W+ G    R G+FP++YV
Sbjct: 3   RALYPFKAQSAKELSLKKGDIIYIRRQIDKNWYEGEHNGRVGIFPASYV 51

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 39.5 bits (92), Expect = 7e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 6/51 (11%)

Query: 227 YTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           + A    +LSL  G ++ I  KK   GWW GE+  +     +GWFP++YV+
Sbjct: 8   FCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGR-----IGWFPSTYVE 53

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
             L  Y A+  E L   +G +I++  K    W EG+ + K     +G FP+++V+
Sbjct: 3   VALFSYEASQPEDLEFQKGDVILVLSKVNEDWLEGQCKGK-----IGIFPSAFVE 52

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 39.4 bits (92), Expect = 7e-05
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LR-GQTGWFPESYVEP 94
           I  + ++  DELS Q  D+++V   Q    GW  GE LR G+ GWFP S  + 
Sbjct: 4  IIKAYTAKQPDELSLQQADVVLV--LQTESDGWYYGERLRDGERGWFPSSCAKE 55

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 39.5 bits (92), Expect = 8e-05
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 110 YPYDSTEPGDLTFNQDEVIYVTKKE---NDWWTGTIGDRTGLFPSNYV 154
           +PY++    +LT  + +++ +  K+     WW G +  R G+FP N+V
Sbjct: 6   FPYEAQNEDELTIKEGDIVTLISKDCIDAGWWEGELNGRRGVFPDNFV 53

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212763 cd11829, SH3_GAS7, Src homology 3 domain of Growth Arrest Specific protein 7

 Score = 39.4 bits (92), Expect = 8e-05
 Identities = 23/53 (43%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 224 LAPYTATSSEQ-LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           L  +T    +Q LS   G+LI + +    GWWEGE     K    GWFPASYV
Sbjct: 5   LYAFTGEQHQQGLSFEAGELIRVLQAPDGGWWEGE-----KDGLRGWFPASYV 52

GAS7 is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 39.5 bits (92), Expect = 8e-05
 Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           A Y +++ E  +LTF   ++I +    + +WW G     TGLFPSN+V
Sbjct: 5   AIYDFEAAEDNELTFKAGDIITILDDSDPNWWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
             +A Y A   +++SL  G+++ + +K  +GWW        K  + GW PASY++
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEKNDSGWWYVR-----KGDKEGWVPASYLE 52

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 39.2 bits (91), Expect = 8e-05
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 5/54 (9%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
            +A Y  +S  +++L  G ++ + +K+  GWW  +L+AK      GW PASY++
Sbjct: 4   AIADYEKSSKSEMALKTGDVVEVVEKSENGWWFCQLKAKR-----GWVPASYLE 52

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 5/55 (9%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGE--LRGQTGWFPESY 91
             I++F +R+ DEL+ +PGD I + ++ + E   GW  G     G+TG FP  +
Sbjct: 2  LIVIHDFNARSEDELTLKPGDKIEL-IEDDEEFGDGWYLGRNLRTGETGLFPVVF 55

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212735 cd11801, SH3_JIP1_like, Src homology 3 domain of JNK-interacting proteins 1 and 2, and similar domains

 Score = 39.2 bits (92), Expect = 8e-05
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG-ELR-GQTGWFPESYV 92
          +RA+++F+ R+ DE+    GD +   V+Q A+  W  G  LR GQ G FP +YV
Sbjct: 2  HRALHKFIPRHEDEIELDIGDPVY--VEQEADDLWCEGTNLRTGQRGIFPAAYV 53

JNK-interacting proteins (JIPs) function as scaffolding proteins for c-Jun N-terminal kinase (JNK) signaling pathways. They bind to components of Mitogen-activated protein kinase (MAPK) pathways such as JNK, MKK, and several MAP3Ks such as MLK and DLK. There are four JIPs (JIP1-4); all contain a JNK binding domain. JIP1 and JIP2 also contain SH3 and Phosphotyrosine-binding (PTB) domains. Both are highly expressed in the brain and pancreatic beta-cells. JIP1 functions as an adaptor linking motor to cargo during axonal transport and also is involved in regulating insulin secretion. JIP2 form complexes with fibroblast growth factor homologous factors (FHFs), which facilitates activation of the p38delta MAPK. The SH3 domain of JIP1 homodimerizes at the interface usually involved in proline-rich ligand recognition, despite the lack of this motif in the domain itself. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 39.1 bits (91), Expect = 9e-05
 Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           + A ++ +LSL +G  +++ K+    W+EG++   G  RQ G FP SYV+V+
Sbjct: 9   FNADTNVELSLRKGDRVVLLKQVDQNWYEGKI--PGTNRQ-GIFPVSYVEVI 57

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          Y A+Y + S    +L+FQ GD+I+V  K   +  W  G +  +TG FP +YV P
Sbjct: 2  YVAMYTYESNEQGDLTFQQGDVILVTKK---DGDWWTGTVGDKTGVFPSNYVRP 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 5/52 (9%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           L  Y A  +++LS + G +I I K+  +GWW G L  +GK+   G FP +YV
Sbjct: 5   LYAYDAQDTDELSFNEGDIIEILKEDPSGWWTGRL--RGKE---GLFPGNYV 51

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          + A+Y F +   D+L F PG+ I V    N E  W  G++  +TG+FP +++
Sbjct: 2  FVALYRFKALEKDDLDFHPGERITVIDDSNEE--WWRGKIGEKTGYFPMNFI 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 110 YPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           + Y      +L     ++I + ++ E  WW+GT+  ++GLFPSN+V
Sbjct: 7   FEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKSGLFPSNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
           +A Y + +TE  +L F + +++ +   E+D  W+   +  R G  P NY+
Sbjct: 3   VALYSFQATESDELPFQKGDILKILNMEDDQNWYKAELQGREGYIPKNYI 52

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 154
           YI  Y YD+    +LT    E+I   KK  E  W  G +  R G+FP N+V
Sbjct: 2   YIVEYDYDAVHEDELTIRVGEIIRNVKKLEEEGWLEGELNGRRGMFPDNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           + A +  +LS  +G +I + ++    W+EG +   G ++  G FP SYV+V
Sbjct: 8   FNADTGVELSFRKGDVITLTRRVDENWYEGRI---GGRQ--GIFPVSYVQV 53

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           A VL  + A  S+ LSL+ G+++ + +K  T W+ G+      K   G FPA++VK
Sbjct: 2   AVVLHDFPAEHSDDLSLNSGEIVYLLEKIDTEWYRGKC-----KNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 4/57 (7%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRGQT-GWFPESYVEP 94
           Y+A+Y+F     +ELS +  DI+ +  K++   GW LA +L     GW P +Y+E 
Sbjct: 1  TYKALYDFAGSVANELSLKKDDIVYIVQKEDN--GWWLAKKLDESKEGWVPAAYLEE 55

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          RA+++F   + ++L F+ G+I+ V +++  E  W A    G+TG  P  YVE
Sbjct: 4  RALFDFPGNDDEDLPFKKGEILTV-IRKPEEQWWNARNSEGKTGMIPVPYVE 54

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212805 cd11872, SH3_DOCK_AB, Src Homology 3 domain of Class A and B Dedicator of Cytokinesis proteins

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
               +  +      QLSL  G  + I ++   GW+ G       K   G FP SYV + 
Sbjct: 1   YGVAIYNFQGDGEHQLSLQVGDTVQILEECE-GWYRGFSL--RNKSLKGIFPKSYVHIK 56

DOCK proteins are atypical guanine nucleotide exchange factors (GEFs) that lack the conventional Dbl homology (DH) domain. They are divided into four classes (A-D) based on sequence similarity and domain architecture: class A includes Dock1, 2 and 5; class B includes Dock3 and 4; class C includes Dock6, 7, and 8; and class D includes Dock9, 10 and 11. All DOCKs contain two homology domains: the DHR-1 (Dock homology region-1), also called CZH1 (CED-5, Dock180, and MBC-zizimin homology 1), and DHR-2 (also called CZH2 or Docker). The DHR-1 domain binds phosphatidylinositol-3,4,5-triphosphate while DHR-2 contains the catalytic activity for Rac and/or Cdc42. This subfamily includes only Class A and B DOCKs, which also contain an SH3 domain at the N-terminal region and a PxxP motif at the C-terminus. Class A/B DOCKs are mostly specific GEFs for Rac, except Dock4 which activates the Ras family GTPase Rap1, probably indirectly through interaction with Rap regulatory proteins. The SH3 domain of class A/B DOCKs have been shown to bind Elmo, a scaffold protein that promotes GEF activity of DOCKs by releasing DHR-2 autoinhibition by the intramolecular SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 4/50 (8%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNY 153
           A + Y++    +L+F + + + V +K    E +WW   + D+ G  P N 
Sbjct: 5   ALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVPRNL 54

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDR------TGLFPSNYV 154
           Y A + + +    +L+F   +   + ++  DWWT    DR       G  P+NY+
Sbjct: 2   YKALWDFKARGDEELSFQAGDQFRIAERSGDWWTALKLDRAGGVVAQGFVPNNYL 56

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212870 cd11937, SH3_UBASH3A, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein A

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMV-PVKQN-AEPGWLAG--ELRGQTGWFPESYVE 93
          RA++++  +N DEL   PGD I V P +Q+ A  GW+ G     G  G+ PE+Y E
Sbjct: 4  RALFQYKPQNIDELMLSPGDYIFVDPTQQSEASEGWVIGISHRTGCRGFLPENYTE 59

UBASH3A is also called Cbl-Interacting Protein 4 (CLIP4), T cell Ubiquitin LigAnd (TULA), or T cell receptor Signaling (STS)-2. It is only found in lymphoid cells and exhibits weak phosphatase activity. UBASH3A facilitates T cell-induced apoptosis through interaction with the apoptosis-inducing factor AIF. It is involved in regulating the level of phosphorylation of the zeta-associated protein (ZAP)-70 tyrosine kinase. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212851 cd11918, SH3_Vinexin_3, Third (or C-terminal) Src Homology 3 domain of Vinexin, also called Sorbin and SH3 domain containing 3 (Sorbs3)

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          Y+A+Y++  +N DEL  + GD   V V Q  + GW  G  R   + G FP +YV P
Sbjct: 4  YKAVYQYRPQNEDELELREGDR--VDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 57

Vinexin is also called Sorbs3, SH3P3, and SH3-containing adapter molecule 1 (SCAM-1). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. Vinexin was first identified as a vinculin binding protein; it is co-localized with vinculin at cell-ECM and cell-cell adhesion sites. There are several splice variants of vinexin: alpha, which contains the SoHo and three SH3 domains and displays tissue-specific expression; and beta, which contains only the three SH3 domains and is widely expressed. Vinexin alpha stimulates the accumulation of F-actin at focal contact sites. Vinexin also promotes keratinocyte migration and wound healing. The SH3 domains of vinexin have been reported to bind a number of ligands including vinculin, WAVE2, DLG5, Abl, and Cbl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYVK 276
             L P+ A + +++S + G +I + +KT    GW  G  Q        GWFP +YV+
Sbjct: 5   RALYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQG-----NFGWFPCNYVE 56

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQ-LIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
              L  + +  S +LSL  G+ L + R+    GW EG   ++G+   VG FP+SYV++
Sbjct: 2   VRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGR-NSRGE---VGLFPSSYVEI 55

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           +A + ++  +  +L+F++ +VI + +   + W  G +  + G+FP N+V
Sbjct: 3   VARFDFEGEQEDELSFSEGDVITLKEYVGEEWAKGELNGKIGIFPLNFV 51

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212980 cd12047, SH3_Noxa1_C, C-terminal Src Homology 3 domain of NADPH oxidase activator 1

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          R  A +++ ++  ++L F  GD I +  + N E  WL G   G+ G FP+ +   
Sbjct: 1  RMVAQHDYSAQGPEDLEFSQGDTIDILSEVNQE--WLEGHCDGRIGIFPKCFAVR 53

Noxa1 is a homolog of p67phox and is a cytosolic subunit of the nonphagocytic NADPH oxidase complex Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Noxa1 is co-expressed with Nox1 in colon, stomach, uterus, prostate, and vascular smooth muscle cells, consistent with its regulatory role. It does not interact with p40phox, unlike p67phox, making Nox1 activity independent of p40phox, unlike Nox2. Noxa1 contains TPR, PB1, and C-terminal SH3 domains, but lacks the central SH3 domain that is present in p67phox. The TPR domain binds activated GTP-bound Rac. The C-terminal SH3 domain binds the polyproline motif found at the C-terminus of Noxo1, a homolog of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 6/57 (10%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE------NDWWTGTIGDRTGLFPSNYVVP 156
           + A Y Y+++   +L+  + +V+ V  ++      + WW G I  R G+FP+NYV  
Sbjct: 2   WTALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDGWWAGKIRHRLGIFPANYVTR 58

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212890 cd11957, SH3_RUSC2, Src homology 3 domain of RUN and SH3 domain-containing protein 2

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 114 STEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYV 154
           +TEPG L+FN+ +++ V ++ + DW   ++G  +GL P  YV
Sbjct: 10  ATEPGQLSFNKGDILQVLSRADGDWLRCSLGPDSGLVPIAYV 51

RUSC2, also called Iporin or Interacting protein of Rab1, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. RUSC proteins are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212846 cd11913, SH3_BAIAP2L1, Src Homology 3 domain of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1, also called Insulin Receptor Tyrosine Kinase Substrate (IRTKS)

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 51 NGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          N   LSF  GD+I + + +  + GWL GE       GWFP SY  P
Sbjct: 14 NKTLLSFAQGDVITLLIPEEKD-GWLYGEHDTTKARGWFPSSYTRP 58

BAIAP2L1 or IRTKS is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. IRTKS mediates the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. It contains an N-terminal IMD or Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The SH3 domain of IRTKS has been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212865 cd11932, SH3_SH3RF2_2, Second Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)

Query: 120 LTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           L F +D++I V  + + +W  G +GD+ G+FP  +V
Sbjct: 22  LKFQKDDIITVISRVDENWAEGKLGDQVGIFPILFV 57

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           A V   Y A   ++L+++ G +I   KK   GWWEGE+  KG++   G FP ++V+
Sbjct: 2   AIVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEGEI--KGRR---GLFPDNFVR 52

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTGLFPSNYV 154
           I  + Y +    +LT    ++I  + K +  WW G I  R GLFP N+V
Sbjct: 3   IVEFDYKAQHEDELTITVGDIITKIKKDDGGWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW---TGTIGDRTGLFPSNYVVP 156
            +A + Y +  P +L   + E + V  K  + W      +  R G+FPSNYV P
Sbjct: 2   CVALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGRVGIFPSNYVSP 55

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212722 cd11788, SH3_RasGAP, Src Homology 3 domain of Ras GTPase-Activating Protein 1

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 39 RRYRAIYEFVSRNG-DELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          RR RAI  +      DELSFQ GDI +  V    E GWL       G++G      VE 
Sbjct: 2  RRVRAILPYNKVPDTDELSFQKGDIFV--VHNELEDGWLWVTSLRTGESGLVFRDLVEE 58

RasGAP, also called Ras p21 protein activator, RASA1, or p120RasGAP, is part of the GAP1 family of GTPase-activating proteins. It is a 120kD cytosolic protein containing an SH3 domain flanked by two SH2 domains at the N-terminal end, a pleckstrin homology (PH) domain, a calcium dependent phospholipid binding domain (CaLB/C2), and a C-terminal catalytic GAP domain. It stimulates the GTPase activity of normal RAS p21. It acts as a positive effector of Ras in tumor cells. It also functions as a regulator downstream of tyrosine receptors such as those of PDGF, EGF, ephrin, and insulin, among others. The SH3 domain of RasGAP is unable to bind proline-rich sequences but have been shown to interact with protein partners such as the G3BP protein, Aurora kinases, and the Calpain small subunit 1. The RasGAP SH3 domain is necessary for the downstream signaling of Ras and it also influences Rho-mediated cytoskeletal reorganization. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 108 AAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTGTIGD-RTGLFPSNYV 154
           A Y Y + +  +++F+  ++I  + + +  WW GT  D   GLFP+NYV
Sbjct: 4   ALYDYQAADDTEISFDPGDIITDIEQIDEGWWRGTGPDGTYGLFPANYV 52

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 37.8 bits (88), Expect = 2e-04
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 108 AAYPYDST--EPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYV 154
           A YPYD++  +P +L+F + E++ V+     WW     +  TG+ PSNY+
Sbjct: 4   ALYPYDASPDDPNELSFEKGEILEVSDTSGKWWQARKSNGETGICPSNYL 53

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 3/55 (5%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
           Y A+Y + S    +L+F  GD+I+V  K++ E  W  G +  +TG FP +YV P
Sbjct: 1  EYIALYPYESNEPGDLTFNAGDVILV-TKKDGE--WWTGTIGDRTGIFPSNYVRP 52

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 5/54 (9%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG--TIGDRTGLFPSNYV 154
              A Y +DS   G+L+    EV+ +T+++    W  G  + G+  GLFPS+YV
Sbjct: 1   KVRALYDFDSQPSGELSLRAGEVLTITRQDVGDGWLEGRNSRGEV-GLFPSSYV 53

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+Y +  +   +L F  GDII++  ++  +  W  GE+ G  G+FP ++V+
Sbjct: 4  KALYNYEGKEPGDLKFSKGDIIIL--RRQVDENWYHGEVNGIHGFFPTNFVQ 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212713 cd11779, SH3_Irsp53_BAIAP2L, Src Homology 3 domain of Insulin Receptor tyrosine kinase Substrate p53, Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2 (BAIAP2)-Like proteins, and similar proteins

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 224 LAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           L P+ A    QLS   G +I ++  +   GW  GE +  G++   GWFP +Y +
Sbjct: 6   LYPHAAGGETQLSFEEGDVITLLGPEPRDGWHYGENERSGRR---GWFPIAYTE 56

Proteins in this family include IRSp53, BAIAP2L1, BAIAP2L2, and similar proteins. They all contain an Inverse-Bin/Amphiphysin/Rvs (I-BAR) or IMD domain in addition to the SH3 domain. IRSp53, also known as BAIAP2, is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. BAIAP2L1, also called IRTKS (Insulin Receptor Tyrosine Kinase Substrate), serves as a substrate for the insulin receptor and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. IRSp53 and IRTKS also mediate the recruitment of effector proteins Tir and EspFu, which regulate host cell actin reorganization, to bacterial attachment sites. BAIAP2L2 co-localizes with clathrin plaques but its function has not been determined. The SH3 domains of IRSp53 and IRTKS have been shown to bind the proline-rich C-terminus of EspFu. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212852 cd11919, SH3_Sorbs1_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 1 (Sorbs1), also called ponsin

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 5/52 (9%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           + A + ++L L +G ++ I K+    W+EGE   +     VG FP SY++++
Sbjct: 9   FKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGR-----VGIFPRSYIELL 55

Sorbs1 is also called ponsin, SH3P12, or CAP (c-Cbl associated protein). It is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It binds Cbl and plays a major role in regulating the insulin signaling pathway by enhancing insulin-induced phosphorylation of Cbl. Sorbs1, like vinexin, localizes at cell-ECM and cell-cell adhesion sites where it binds vinculin, paxillin, and afadin. It may function in the control of cell motility. Other interaction partners of Sorbs1 include c-Abl, Sos, flotillin, Grb4, ataxin-7, filamin C, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 38.1 bits (88), Expect = 3e-04
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           A Y + +    +L+F + + +Y+ +K + +W+ G    R G+FP +YV
Sbjct: 5   AVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGRVGIFPISYV 52

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 37.7 bits (88), Expect = 3e-04
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYV 154
           EY  A + +   +  DL F + E++ V +K  + WW     + +TG+ P  YV
Sbjct: 1   EYVRALFDFPGNDDEDLPFKKGEILTVIRKPEEQWWNARNSEGKTGMIPVPYV 53

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 2/48 (4%)

Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +++ +++ DEL+   GDII    K +   GW  GE++G+ G FP+++V
Sbjct: 6  FDYKAQHEDELTITVGDIITKIKKDDG--GWWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212864 cd11931, SH3_SH3RF3_2, Second Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 15/36 (41%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 120 LTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           LTF +DE++ V ++ + +W  G +GD+ G+FP  YV
Sbjct: 20  LTFTKDEILTVIRRVDENWAEGMLGDKIGIFPILYV 55

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRT-------GLFPSNY 153
           Y A Y Y+     +LT  +D+++Y+ +K ++DWW   +   +       GL P+ Y
Sbjct: 2   YKALYDYEPQTEDELTIQEDDILYLLEKSDDDWWKVKLKVNSSDDDEPVGLVPATY 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 110 YPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGD-RTGLFPSNYV 154
           Y Y+  E  ++   + E++  +   + DWW GT     +GLFPSNYV
Sbjct: 6   YDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGTNSKGESGLFPSNYV 52

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 5/52 (9%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           L  Y A   ++LS   G L+ I  K+   WW+          + G  P++YV
Sbjct: 5   LYDYEAQHPDELSFEEGDLLYISDKSDPNWWKATC-----GGKTGLIPSNYV 51

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 2/49 (4%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
           A Y Y+  E  +L+F   +++   ++E++  W  G +  R GL+P+NYV
Sbjct: 4   ALYDYEGQESDELSFKAGDILTKLEEEDEQGWCKGRLDGRVGLYPANYV 52

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 37.3 bits (87), Expect = 4e-04
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
           +A + + +T   +L+F +  ++ V   E+D  W+   +  + GL P NY+
Sbjct: 3   VAKHDFKATAEDELSFKKGSILKVLNMEDDPNWYKAELDGKEGLIPKNYI 52

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 37.3 bits (86), Expect = 4e-04
 Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  +  + A +S++LS  +G  + I +K    W+EGE   +     VG FP SYV+ +
Sbjct: 3   ARAVYDFKAQTSKELSFKKGDTVYILRKIDQNWYEGEHHGR-----VGIFPISYVEKL 55

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212895 cd11962, SH3_Abp1_fungi_C1, First C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.1 bits (86), Expect = 4e-04
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           A VL  Y      ++ L  G+++   +     WW G       K + G FP++YV++
Sbjct: 2   AVVLYDYEKDEDNEIELVEGEIVTNIEMVDEDWWMGT----NSKGESGLFPSNYVEL 54

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212874 cd11941, SH3_ARHGEF37_C2, Second C-terminal Src homology 3 domain of Rho guanine nucleotide exchange factor 37

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQTGWFPESYV 92
          A Y F +R+  E+S Q G  + V  P  +   P W   E+ GQ G+ P SY+
Sbjct: 4  AAYPFTARSKHEVSLQAGQPVTVLEPHDKKGSPEWSLVEVNGQRGYVPSSYL 55

ARHGEF37 contains a RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. Its specific function is unknown. Its domain architecture is similar to the C-terminal half of DNMBP or Tuba, a cdc42-specific GEF that provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics, and plays an important role in regulating cell junction configuration. GEFs activate small GTPases by exchanging bound GDP for free GTP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           VL  Y   + ++L L  G +I I ++   GWW G L  K      G FP+++VK
Sbjct: 5   VLFEYVPQNEDELELKVGDIIDINEEVEEGWWSGTLNGKS-----GLFPSNFVK 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 10/59 (16%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTT-----GWWEGELQAKGKKRQVGWFPASYV 275
           T +  Y A++ ++L+L RG  + +  K +      GWW G++  +     VG FP++YV
Sbjct: 3   TAVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDR-----VGIFPSNYV 56

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 37.3 bits (86), Expect = 5e-04
 Identities = 18/54 (33%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +Y  IY + +R+ DE++ + G ++ V +++N E GW     +G+ GW P SY++
Sbjct: 2  KYTVIYPYTARDQDEINLEKGAVVEV-IQKNLE-GWWKIRYQGKEGWAPASYLK 53

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 36.9 bits (85), Expect = 5e-04
 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 6/57 (10%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           A  L  +TA     L+ S+  +I + ++    WW GE+         GWFP SYVK+
Sbjct: 2   AQALCSWTAKKDNHLNFSKNDIITVLEQQEN-WWFGEVHG-----GRGWFPKSYVKL 52

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 36.9 bits (86), Expect = 5e-04
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 9/55 (16%)

Query: 42 RAIYEFVSRNGDE---LSFQPGDIIMV--PVKQNAEPGWLAGELRGQTGWFPESY 91
          +A+Y+F  ++ DE   L+F+ GD+I V   V +N    W  G L  + G FP S+
Sbjct: 3  KALYDFEMKDEDEKDCLTFKKGDVITVIRRVDEN----WAEGRLGDKIGIFPISF 53

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 37.3 bits (87), Expect = 5e-04
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 12/56 (21%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWW-----TGTIGDRTGLFPSNYV 154
           +A YP+      +L+F + E + + +K   + DWW      GT    TGL P NYV
Sbjct: 3   VALYPFTGENDEELSFEKGERLEIIEKPEDDPDWWKARNALGT----TGLVPRNYV 54

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 36.9 bits (86), Expect = 6e-04
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 229 ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           A + ++L+ S G++I++  +    WWEG ++  G   + G FP S+
Sbjct: 10  ADNDDELTFSEGEIIVVTGEEDDEWWEGHIE--GDPSRRGVFPVSF 53

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 10/59 (16%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTT-----GWWEGELQAKGKKRQVGWFPASYV 275
           T L  Y A   ++L+L RGQ + +  K        GWW G++  K     VG FP++YV
Sbjct: 3   TALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDK-----VGIFPSNYV 56

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           Y A   ++L+ ++  +I   +K   GWW G+    G K+Q+ WFP++YV+ +
Sbjct: 12  YKAQREDELTFTKNAIIQNVEKQEGGWWRGDY---GGKKQL-WFPSNYVEEI 59

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212850 cd11917, SH3_Sorbs2_3, Third (or C-terminal) Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 36.9 bits (85), Expect = 6e-04
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT--GWFPESYVE 93
          ++A+Y ++ RN DEL  + GD+I   V +  + GW  G  R     G FP +YV+
Sbjct: 7  FQALYNYMPRNEDELELREGDVI--DVMEKCDDGWFVGTSRRTKFFGTFPGNYVK 59

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212804 cd11871, SH3_p67phox_N, N-terminal (or first) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 36.8 bits (85), Expect = 6e-04
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +R +YEFV    +EL   PG+I+ V  K      W      G+ G  P +++EP
Sbjct: 2  HRVLYEFVPETKEELQVLPGNIVFVLKKGT--DNWATVVFNGKKGLVPCNFLEP 53

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. The N-terminal SH3 domain increases the affinity of p67phox for the oxidase complex. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 36.5 bits (84), Expect = 7e-04
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 2/49 (4%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYV 154
           A Y + + +  +L+  + ++I +  K  +  WW G I  R G FP+NYV
Sbjct: 4   ARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRVGWFPANYV 52

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTT----GWWEGELQAKGKKRQVGWFPASYV 275
           Y A S E+LS   G +I I +K       GWWEGE   +     VG FP+  V
Sbjct: 8   YEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGR-----VGVFPSLVV 55

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212922 cd11989, SH3_Intersectin1_2, Second Src homology 3 domain (or SH3B) of Intersectin-1

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 6/57 (10%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           A  L P+ A     L+ ++  +I + ++    WW GE+Q      Q GWFP SYVK+
Sbjct: 2   AQALYPWRAKKDNHLNFNKNDVITVLEQQDM-WWFGEVQG-----QKGWFPKSYVKL 52

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212923 cd11990, SH3_Intersectin2_2, Second Src homology 3 domain (or SH3B) of Intersectin-2

 Score = 36.6 bits (84), Expect = 7e-04
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 120 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
           L F+++++I V +++ +WW G +    G FP +YV
Sbjct: 16  LNFSKNDIITVLEQQENWWFGEVHGGRGWFPKSYV 50

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The second SH3 domain (or SH3B) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVE 93
          +A++++ ++  DEL+F    II    KQ  E GW  G+  G+   WFP +YVE
Sbjct: 7  KALFDYKAQREDELTFTKNAIIQNVEKQ--EGGWWRGDYGGKKQLWFPSNYVE 57

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212898 cd11965, SH3_ASAP1, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 1

 Score = 36.9 bits (85), Expect = 7e-04
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 5/56 (8%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESYV 92
          R + IY+  + N DEL+F  G++I+V  +++ E  W  G + GQ    G FP S+V
Sbjct: 1  RVKTIYDCQADNDDELTFVEGEVIIVTGEEDQE--WWIGHIEGQPERKGVFPVSFV 54

ASAP1 is also called DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6. However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
           Y A YP+++    +++FN  ++I V +K   E  W  G+     G FP NYV
Sbjct: 4   YRALYPFEARNHDEMSFNAGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYV 55

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG--WWEGELQAKGKKRQVGWFPASYVKV 277
           A  L  +       L+  +G +I I KK+ +   WW G +  +      G FPA+YV++
Sbjct: 2   AVALYDFAGEQPGDLAFQKGDIITILKKSDSQNDWWTGRIGGR-----EGIFPANYVEL 55

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212730 cd11796, SH3_DNMBP_N3, Third N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 36.6 bits (85), Expect = 8e-04
 Identities = 10/39 (25%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 117 PGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
             +L   + +V+ +T   +  W+ G +  R G+FP  +V
Sbjct: 13  DEELDLREGDVVTITGILDKGWFRGELNGRRGIFPEGFV 51

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP binds the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
             L+ + A     LS  +G+++ I  K   GWW  E  +KG +   G  P +Y+KV
Sbjct: 3   EALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAE-NSKGNR---GLVPKTYLKV 54

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212936 cd12003, SH3_EFS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAE-PGWLAGELRGQTGWFP 88
          +A+Y+  + + +ELSF+ GD++MV  +++   PGW    L GQ G  P
Sbjct: 4  KALYDNAAESPEELSFRRGDVLMVLKREHGSLPGWWLCSLHGQQGIAP 51

EFS is also called HEFS, CASS3 (Cas scaffolding protein family member 3) or SIN (Src-interacting protein). It was identified based on interactions with the Src kinases, Fyn and Yes. It plays a role in thymocyte development and acts as a negative regulator of T cell proliferation. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212871 cd11938, SH3_ARHGEF16_26, Src homology 3 domain of the Rho guanine nucleotide exchange factors ARHGEF16 and ARHGEF26

 Score = 36.4 bits (84), Expect = 9e-04
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 3/50 (6%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           YTA   ++LSL +  ++++ +  + GW+ GE    G++   GWFP+S  K
Sbjct: 8   YTAKQPDELSLQQADVVLVLQTESDGWYYGERLRDGER---GWFPSSCAK 54

ARHGEF16, also called ephexin-4, acts as a GEF for RhoG, activating it by exchanging bound GDP for free GTP. RhoG is a small GTPase that is a crucial regulator of Rac in migrating cells. ARHGEF16 interacts directly with the ephrin receptor EphA2 and mediates cell migration and invasion in breast cancer cells by activating RhoG. ARHGEF26, also called SGEF (SH3 domain-containing guanine exchange factor), also activates RhoG. It is highly expressed in liver and may play a role in regulating membrane dynamics. ARHGEF16 and ARHGEF26 contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 36.3 bits (84), Expect = 9e-04
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
            L  Y+A   E+L L +G+ + +  K   GW  G     G+   VG FP++YV
Sbjct: 4   ALHSYSAHRPEELELQKGEGVRVLGKFQEGWLRGLSLVTGR---VGIFPSNYV 53

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 36.2 bits (84), Expect = 9e-04
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R RA+Y++ + +  E+SF PGDII   ++Q  E  W      G  G FP +YVE
Sbjct: 1  RARALYDYQAADDTEISFDPGDII-TDIEQIDEGWWRGTGPDGTYGLFPANYVE 53

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212773 cd11839, SH3_Intersectin_4, Fourth Src homology 3 domain (or SH3D) of Intersectin

 Score = 36.5 bits (85), Expect = 0.001
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 6/50 (12%)

Query: 111 PYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDR-----TGLFPSNYV 154
           P+ +T    L+    +++ V KK  + WW G +  R      G FP+NYV
Sbjct: 7   PFTATAENQLSLAVGQLVLVRKKSPSGWWEGELQARGKKRQIGWFPANYV 56

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fourth SH3 domain (or SH3D) of ITSN1 has been shown to bind SHIP2, Numb, CdGAP, and N-WASP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212727 cd11793, SH3_ephexin1_like, Src homology 3 domain of ephexin-1-like SH3 domain containing Rho guanine nucleotide exchange factors

 Score = 36.2 bits (84), Expect = 0.001
 Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT-IGD-RTGLFPSNYVV 155
              + Y + +P +LT  + +V+ V +K  D W+ G  + D   G FPS+Y  
Sbjct: 3   QCVHAYTAQQPDELTLEEGDVVNVLRKMPDGWYEGERLRDGERGWFPSSYTE 54

Members of this family contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and C-terminal SH3 domains. They include the Rho guanine nucleotide exchange factors ARHGEF5, ARHGEF16, ARHGEF19, ARHGEF26, ARHGEF27 (also called ephexin-1), and similar proteins, and are also called ephexins because they interact directly with ephrin A receptors. GEFs interact with Rho GTPases via their DH domains to catalyze nucleotide exchange by stabilizing the nucleotide-free GTPase intermediate. They play important roles in neuronal development. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEV--IYVTKKENDWWTGTIGDRTGLFPSNYV 154
            A Y + + +  +L+  + +V  IY  K +  WW G I  R G FPS YV
Sbjct: 3   KARYDFCARDMRELSLKEGDVVKIYNKKGQQGWWRGEINGRIGWFPSTYV 52

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNA---EPGWLAGELRGQTGWFPESYVEP 94
          A++++ +   DEL+ + GD + V  K +A   + GW  G++  + G FP +YV  
Sbjct: 4  AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEGWWTGKINDRVGIFPSNYVTS 58

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMV---PVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          A++++ +R  DEL+ + G  + V       + + GW  G++  + G FP +YV P
Sbjct: 4  ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEGWWTGKIGDKVGIFPSNYVAP 58

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           L  Y       L  ++G +I++R+K    W+ GEL         G+ PASY++
Sbjct: 6   LYSYEGKEPGDLKFNKGDIIILRRKVDENWYHGELNGCH-----GFLPASYIQ 53

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 44 IYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +++F + + D+LS   G+I+ +  K + E  W  G+ +  TG FP ++V+
Sbjct: 5  LHDFPAEHSDDLSLNSGEIVYLLEKIDTE--WYRGKCKNTTGIFPANHVK 52

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212835 cd11902, SH3_Nck2_2, Second Src Homology 3 domain of Nck2 adaptor protein

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 45 YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          + +V+   DELS   G    V V +    GW  G   GQ GWFP +YV
Sbjct: 7  FAYVAEREDELSLVKGS--RVTVMEKCSDGWWRGSYNGQIGWFPSNYV 52

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           L  Y A + + LS  +G  + I   +   WW     + GK+   G+ P++Y
Sbjct: 5   LYDYEARTDDDLSFKKGDRLQILDDSDGDWWLARHLSTGKE---GYIPSNY 52

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 5/56 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
            +VL  YTA   ++LS+S+G ++ + +K   GWW  E     +  Q G  P +Y++
Sbjct: 2   YSVLYDYTAQEDDELSISKGDVVAVIEKGEDGWWTVE-----RNGQKGLVPGTYLE 52

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 36.5 bits (84), Expect = 0.001
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)

Query: 44 IYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVE 93
          ++ +VS+  DELS +  D++ +  K   + GW+ GE     + GWFP S VE
Sbjct: 5  VHPYVSQEPDELSLELADVLNILDK--TDDGWIFGERLHDQERGWFPSSVVE 54

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212949 cd12016, SH3_Tks_2, Second Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
            Y A + +++    G ++ + +K   GWW+   Q K      GW PA+Y+K
Sbjct: 8   AYKAENEDEIGFETGVVVEVIQKNLDGWWKIRYQGK-----EGWAPATYLK 53

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the second SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212869 cd11936, SH3_UBASH3B, Src homology 3 domain of Ubiquitin-associated and SH3 domain-containing protein B

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 4/57 (7%)

Query: 42 RAIYEFVSRNGDELSFQPGD-IIMVPVKQNA-EPGWLAGE--LRGQTGWFPESYVEP 94
          + IY +  +N DEL   PGD I M P++Q +   GW+ G     G +G  PE+Y+  
Sbjct: 5  QVIYPYTPQNDDELELVPGDYIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITK 61

UBASH3B, also called Suppressor of T cell receptor Signaling (STS)-1 or T cell Ubiquitin LigAnd (TULA)-2 is an active phosphatase that is expressed ubiquitously. The phosphatase activity of UBASH3B is essential for its roles in the suppression of TCR signaling and the regulation of EGFR. It also interacts with Syk and functions as a negative regulator of platelet glycoprotein VI signaling. TULA proteins contain an N-terminal UBA domain, a central SH3 domain, and a C-terminal histidine phosphatase domain. They bind c-Cbl through the SH3 domain and to ubiquitin via UBA. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWL-AGELRGQTGWFPESYV 92
          +A+Y F S N +EL+F+ G+++ V  K   +P W    +  GQ G  P++YV
Sbjct: 4  QALYPFSSSNDEELNFEKGEVMDVIEKPENDPEWWKCRKANGQVGLVPKNYV 55

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          A++++ +   DELSF+ GD++ V  K      W    L G+ G+ P +Y
Sbjct: 5  ALWDYSAEFPDELSFKEGDMVTVLRKDGEGTDWWWASLCGREGYVPRNY 53

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212915 cd11982, SH3_Shank1, Src homology 3 domain of SH3 and multiple ankyrin repeat domains protein 1

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 5/50 (10%)

Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           PY + +  ++SLS+G+ I +      G+WEG  Q KG+   VGWFP+  V
Sbjct: 8   PYQSQAEGEISLSKGEKIKVLSVGEGGFWEG--QVKGR---VGWFPSDCV 52

Shank1, also called SSTRIP (Somatostatin receptor-interacting protein), is a brain-specific protein that plays a role in the construction of postsynaptic density (PSD) and the maturation of dendritic spines. Mice deficient in Shank1 show altered PSD composition, thinner PSDs, smaller dendritic spines, and weaker basal synaptic transmission, although synaptic plasticity is normal. They show increased anxiety and impaired fear memory, but also show better spatial learning. Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRGQTGWFPESYVE 93
          A Y F   + ++L F+ GDI+ + V    +P W  A    G+ G  P +YV+
Sbjct: 6  AKYNFNGASEEDLPFKKGDILTI-VAVTKDPNWYKAKNKDGREGMIPANYVQ 56

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 35.9 bits (82), Expect = 0.001
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG---TIGDRTGLFPSNYVVP 156
           ++A Y Y+S    DL+F + E +  V   E DWW     T G +TG  PSNYV P
Sbjct: 2   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLTTG-QTGYIPSNYVAP 55

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212920 cd11987, SH3_Intersectin1_1, First Src homology 3 domain (or SH3A) of Intersectin-1

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 7/55 (12%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYVK 276
           L P+ A S +++++  G ++M+ +  T   GW  GEL+ K      GWFPA+Y +
Sbjct: 5   LYPFEARSHDEITIQPGDIVMVDESQTGEPGWLGGELKGK-----TGWFPANYAE 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEV--IYVTKKENDWWTGTIGDRTGLFPSNYV 154
           IA Y + + +  +L+  + +V  IY     N WW G +  R G FPS YV
Sbjct: 4   IARYDFCARDMRELSLLKGDVVKIYTKMSTNGWWRGEVNGRVGWFPSTYV 53

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           A  L  +     E+L    G +I +   +   WW G ++      + GWFPAS+V++
Sbjct: 2   AEALWDHVTMDPEELGFKAGDVIEVLDMSDKDWWWGSIR-----DEEGWFPASFVRL 53

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212731 cd11797, SH3_DNMBP_N4, Fourth N-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY 153
           Y +A Y + + EP +L F   + I +    E+ W  G +  R G+FP  +
Sbjct: 1   YGVALYRFQALEPNELDFEVGDRIRIIATLEDGWLEGELKGRRGIFPHRF 50

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin and key regulatory proteins of the actin cytoskeleton. It plays an important role in regulating cell junction configuration. The four N-terminal SH3 domains of DNMBP bind the GTPase dynamin, which plays an important role in the fission of endocytic vesicles. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212719 cd11785, SH3_SH3RF_C, C-terminal (Fourth) Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 111 PYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 156
           PY      +L   + ++++V KK  D W+ GT+    +TGLFP ++V  
Sbjct: 7   PYPPQSEAELELKEGDIVFVHKKREDGWFKGTLQRTGKTGLFPGSFVES 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the fourth SH3 domain, located at the C-terminus of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          YRA+Y+F S   + LSF  G+  ++  + NA   WL     G+TG+ P +YV+
Sbjct: 2  YRALYDFKSAEPNTLSFSEGETFLLLERSNAH-WWLVTNHSGETGYVPANYVK 53

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212717 cd11783, SH3_SH3RF_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1 (SH3RF1), SH3RF3, and similar domains

 Score = 35.4 bits (82), Expect = 0.002
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEP 94
           Y A+Y +  +  DEL  + G++  V  K     GW  G     GQ+G FP +YV+P
Sbjct: 1  IYVALYPYKPQKPDELELRKGEMYTVTEKCQ--DGWFKGTSLRTGQSGVFPGNYVQP 55

SH3RF1 (or POSH) and SH3RF3 (or POSH2) are scaffold proteins that function as E3 ubiquitin-protein ligases. They contain an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle of SH3RF1 and SH3RF3, and similar domains. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212865 cd11932, SH3_SH3RF2_2, Second Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 12/59 (20%)

Query: 42 RAIYEF------VSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQTGWFPESYV 92
          RA+Y F         + D L FQ  DII V   V +N    W  G+L  Q G FP  +V
Sbjct: 3  RALYNFDLKEKNREESKDCLKFQKDDIITVISRVDEN----WAEGKLGDQVGIFPILFV 57

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212718 cd11784, SH3_SH3RF2_3, Third Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 35.1 bits (81), Expect = 0.002
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEP 94
             A++ + +   +EL  Q G+   V V    + GWL G   + G+ G FP +YV P
Sbjct: 1  MCVALHSYSAHRPEELELQKGE--GVRVLGKFQEGWLRGLSLVTGRVGIFPSNYVSP 55

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212903 cd11970, SH3_PLCgamma1, Src homology 3 domain of Phospholipase C (PLC) gamma 1

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGDRTGL-FPSNYV 154
           A + Y +    +LTF ++ +I  V K+E  WW G  G +  L FPSNYV
Sbjct: 8   ALFDYKAQREDELTFTKNAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYV 56

PLCgamma1 is widely expressed and is essential in growth and development. It is activated by the TrkA receptor tyrosine kinase and functions as a key regulator of cell differentiation. It is also the predominant PLCgamma in T cells and is required for T cell and NK cell function. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212898 cd11965, SH3_ASAP1, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 1

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 4/40 (10%)

Query: 119 DLTFNQDEVIYVTKKEN-DWWTGTIG---DRTGLFPSNYV 154
           +LTF + EVI VT +E+ +WW G I    +R G+FP ++V
Sbjct: 15  ELTFVEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFV 54

ASAP1 is also called DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6. However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212906 cd11973, SH3_ASEF, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          A+++ V+ +  EL F+ GD+I V    N E  W  G +    GWFP S+V
Sbjct: 22 ALWDHVTMDDQELGFKAGDVIEVMDATNKE--WWWGRVLDSEGWFPASFV 69

ASEF, also called ARHGEF4, exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli). GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF can activate Rac1 or Cdc42. Truncated ASEF, which is found in colorectal cancers, is constitutively active and has been shown to promote angiogenesis and cancer cell migration. ASEF contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 73

>gnl|CDD|212935 cd12002, SH3_NEDD9, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Neural precursor cell Expressed, Developmentally Down-regulated 9

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 19/49 (38%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTGWFP 88
          RA+Y+ V    +EL+F+ GDI+ V ++QN     GW    L G+ G  P
Sbjct: 3  RALYDNVPECAEELAFRKGDILTV-IEQNTGGLEGWWLCSLHGRQGIAP 50

NEDD9 is also called human enhancer of filamentation 1 (HEF1) or CAS-L (Crk-associated substrate in lymphocyte). It was first described as a gene predominantly expressed in early embryonic brain, and was also isolated from a screen of human proteins that regulate filamentous budding in yeast, and as a tyrosine phosphorylated protein in lymphocytes. It promotes metastasis in different solid tumors. NEDD9 localizes in focal adhesions and associates with FAK and Abl kinase. It also interacts with SMAD3 and the proteasomal machinery which allows its rapid turnover; these interactions are not shared by other CAS proteins. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           YT  ++++LS  RG ++++  K ++ WW GE    G +   G  P  Y+ V
Sbjct: 10  YTGRTAQELSFKRGDVLLLHSKASSDWWRGE--HNGMR---GLIPHKYISV 55

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          A +++  R   ELSF+ GD++++  K +++  W  GE  G  G  P  Y+
Sbjct: 6  ACFDYTGRTAQELSFKRGDVLLLHSKASSD--WWRGEHNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYV-TKKENDWWTGTIGDRTGLFPSNYV 154
           +A + Y      +L+F + +V+ + +K  +DWW G      GL P  Y+
Sbjct: 5   VACFDYTGRTAQELSFKRGDVLLLHSKASSDWWRGEHNGMRGLIPHKYI 53

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212766 cd11832, SH3_Shank, Src homology 3 domain of SH3 and multiple ankyrin repeat domains (Shank) proteins

 Score = 35.5 bits (82), Expect = 0.002
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPS 151
           Y+IA   Y   E G+++ ++ + + V    E  +W G++  RTG FPS
Sbjct: 1   YFIAVKSYSPQEEGEISLHKGDRVKVLSIGEGGFWEGSVRGRTGWFPS 48

Shank proteins carry scaffolding functions through multiple sites of protein-protein interaction in its domain architecture, including ankyrin (ANK) repeats, a long proline rich region, as well as SH3, PDZ, and SAM domains. They bind a variety of membrane and cytosolic proteins, and exist in alternatively spliced isoforms. They are highly enriched in postsynaptic density (PSD) where they interact with the cytoskeleton and with postsynaptic membrane receptors including NMDA and glutamate receptors. They are crucial in the construction and organization of the PSD and dendritic spines of excitatory synapses. There are three members of this family (Shank1, Shank2, Shank3) which show distinct and cell-type specific patterns of expression. Shank1 is brain-specific; Shank2 is found in neurons, glia, endocrine cells, liver, and kidney; Shank3 is widely expressed. The SH3 domain of Shank binds GRIP, a scaffold protein that binds AMPA receptors and Eph receptors/ligands. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212907 cd11974, SH3_ASEF2, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor 2

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          A+++ V+ +  EL+F+ GD+I V    N +  W  G    +  WFP S+V
Sbjct: 5  ALWDHVTMDDQELAFKAGDVIRVLEASNKD--WWWGRNEDREAWFPASFV 52

ASEF2, also called Spermatogenesis-associated protein 13 (SPATA13), is a GEF that localizes with actin at the leading edge of cells and is important in cell migration and adhesion dynamics. GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF2 can activate both Rac 1 and Cdc42, but only Rac1 activation is necessary for increased cell migration and adhesion turnover. Together with APC (adenomatous polyposis coli) and Neurabin2, a scaffold protein that binds F-actin, it is involved in regulating HGF-induced cell migration. ASEF2 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 35.5 bits (81), Expect = 0.002
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          A+++ V+    EL+F+ GD+I V    N +  W  G++  + GWFP S+V
Sbjct: 9  AVWDHVTMANRELAFKAGDVIKVLDASNKD--WWWGQIDDEEGWFPASFV 56

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 34.9 bits (81), Expect = 0.003
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 14/65 (21%)

Query: 221 ATVLAPYT-ATSSEQLSLSRGQLIMIRKKT-----TTGWWEGELQAKGKKR--QVGWFPA 272
              L  +T      +LSL +G ++ +  KT      + WW      KG+ R  ++GWFP+
Sbjct: 2   CRALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWW------KGRTRDGRIGWFPS 55

Query: 273 SYVKV 277
           +YV+V
Sbjct: 56  NYVEV 60

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 7/60 (11%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPESYVEP 94
          + +A+Y + S + D+L+F  G +I V  +++A+  W  GE        + G FP+++VE 
Sbjct: 3  KVKALYPYESDHEDDLNFDVGQLITVTEEEDAD--WYFGEYVDSNGNTKEGIFPKNFVEV 60

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212803 cd11870, SH3_p67phox-like_C, C-terminal Src Homology 3 domain of the p67phox subunit of NADPH oxidase and similar proteins

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           Y A   E L    G  I +  +    W EG   + G+   VG FP  +V 
Sbjct: 8   YEAQGPEDLGFREGDTIDVLSEVNEAWLEGH--SDGR---VGIFPKCFVV 52

This subfamily is composed of p67phox, NADPH oxidase activator 1 (Noxa1), and similar proteins. p67phox, also called Neutrophil cytosol factor 2 (NCF-2), and Noxa1 are homologs and are the cytosolic subunits of the phagocytic (Nox2) and nonphagocytic (Nox1) NADPH oxidase complexes, respectively. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox and Noxa1 play regulatory roles. p67phox contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. Noxa1 has a similar domain architecture except it is lacking the N-terminal SH3 domain. The TPR domain of both binds activated GTP-bound Rac, while the C-terminal SH3 domain of p67phox and Noxa1 binds the polyproline motif found at the C-terminus of p47phox and Noxo1, respectively. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           L  + A    +L+   G++I++   +   WW+GE       R VG FP+++V
Sbjct: 7   LYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGE-----NHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYV 154
           +Y+  +     EP +L+F + ++IY+  KE D   WW G +  + GL P +Y+
Sbjct: 1   WYMGLWDCSGNEPDELSFKRGDLIYIISKEYDSFGWWVGELNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 9/58 (15%)

Query: 106 YIAAYPYDSTE--PG-----DLTFNQDEVIYV--TKKENDWWTGTIGDRTGLFPSNYV 154
            +A + YD  E  P      +L+F   ++I V     E+ ++ G +  + GL PSN++
Sbjct: 2   MVALFDYDPRESSPNVDAEVELSFRAGDIITVFGEMDEDGFYYGELNGQRGLVPSNFL 59

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 34.6 bits (80), Expect = 0.003
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG--TIGDRTGLFPSNYV 154
            Y A   + + + GDL+F + EV+ +  K  D WW    + G+R GL P  Y+
Sbjct: 1   LYEALSDFQAEQEGDLSFKKGEVLRIISKRADGWWLAENSKGNR-GLVPKTYL 52

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212872 cd11939, SH3_ephexin1, Src homology 3 domain of the Rho guanine nucleotide exchange factor, ephexin-1 (also called NGEF or ARHGEF27)

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           PY +   ++LSL    ++ I  KT  GW  GE     ++   GWFP+S V+
Sbjct: 7   PYVSQEPDELSLELADVLNILDKTDDGWIFGERLHDQER---GWFPSSVVE 54

Ephexin-1, also called NGEF (neuronal GEF) or ARHGEF27, activates RhoA, Tac1, and Cdc42 by exchanging bound GDP for free GTP. It is expressed mainly in the brain in a region associated with movement control. It regulates the stability of postsynaptic acetylcholine receptor (AChR) clusters and thus, plays a critical role in the maturation and neurotransmission of neuromuscular junctions. Ephexin-1 directly interacts with the ephrin receptor EphA4 and their coexpression enhances the ability of ephexin-1 to activate RhoA. It is required for normal axon growth and EphA-induced growth cone collapse. Ephexin-1 contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), and SH3 domains. The SH3 domains of ARHGEFs play an autoinhibitory role through intramolecular interactions with a proline-rich region N-terminal to the DH domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 2/52 (3%)

Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG-ELRGQTGWFPESYVE 93
           +Y + ++  DEL+   G+ + V ++     GW+      G+ G+ PE+Y++
Sbjct: 6  VLYSYEAQRPDELTITEGEELEV-IEDGDGDGWVKARNKSGEVGYVPENYLQ 56

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212863 cd11930, SH3_SH3RF1_2, Second Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 1/36 (2%)

Query: 120 LTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           L F +D+++ V ++ + +W  G +GD+ G+FP +YV
Sbjct: 20  LPFAKDDILTVIRRVDENWAEGMLGDKIGIFPISYV 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 34.8 bits (80), Expect = 0.003
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG---TIGDRTGLFPSNYV 154
           +A Y Y+ +  GDL F + E + + ++  +WW     T G   G  P N+V
Sbjct: 3   VALYSYEPSHDGDLGFEKGEKLRILEQSGEWWKAQSLTTGQE-GFIPFNFV 52

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212734 cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTGWFPESYVEP 94
          Y A+Y F +R+  ELS   G ++ V  K + +  P W   E RG+ G+ P +Y+  
Sbjct: 2  YYALYTFEARSPGELSVTEGQVVTVLEKHDLKGNPEWWLVEDRGKQGYVPSNYLAK 57

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212878 cd11945, SH3_Endophilin_B1, Src homology 3 domain of Endophilin-B1

 Score = 35.0 bits (80), Expect = 0.003
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          S  R+ R +Y++ + N  ELS    ++I V      +  WL GE   Q G  P +Y+E
Sbjct: 1  SGSRKARVLYDYDAANSTELSLLADEVITVYSVPGMDSDWLMGERGNQKGKVPITYLE 58

Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth factor (NGF) trafficking, neurite outgrowth, mitochondrial outer membrane dynamics, and cell death. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. Endophilin-B1 forms homo- and heterodimers (with endophilin-B2) through its BAR domain. It interacts with amphiphysin 1 and dynamin 1 through its SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 34.7 bits (80), Expect = 0.003
 Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           +  + AT  + +S  +GQ + +  K  +GWW  ++  K      GW P+SY+
Sbjct: 5   IGEFQATIQDGISFQKGQKVEVIDKNPSGWWYVKIDGKE-----GWAPSSYI 51

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 106 YIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRT---GLFPSNYVVP 156
           Y A Y Y + +  +++F + D +I V   ++ W  GT+  RT   G+ P+NYV  
Sbjct: 2   YRAMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTV-QRTGQSGMLPANYVEL 55

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212910 cd11977, SH3_VAV2_2, C-terminal (or second) Src homology 3 domain of VAV2 protein

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
           + A    +LSL  G ++ I  +     GWW+GE   +     +GWFP++YV+  G
Sbjct: 9   FAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGR-----IGWFPSTYVEEEG 58

VAV2 is widely expressed and functions as a guanine nucleotide exchange factor (GEF) for RhoA, RhoB and RhoG and also activates Rac1 and Cdc42. It is implicated in many cellular and physiological functions including blood pressure control, eye development, neurite outgrowth and branching, EGFR endocytosis and degradation, and cell cluster morphology, among others. It has been reported to associate with Nek3. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  L  +T  S  +L+   G +I +  +    W EG ++        G FP S+VK++
Sbjct: 2   AEALFDFTGNSKLELNFKAGDVIFLLSRVNKDWLEGTVRGA-----TGIFPLSFVKII 54

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 34.3 bits (79), Expect = 0.004
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
            A  L  Y A   +++S     +I   +    GWW G       + + G FPA+YV++
Sbjct: 1   TAVALYDYQAADDDEISFDPDDIITNIEMIDEGWWRGVC-----RGKYGLFPANYVEL 53

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           A  L  +T  + E LS  RG  I++ +     W  G L  +      G FP ++
Sbjct: 2   AVALYDFTGETEEDLSFQRGDRILVTEHLDAEWSRGRLNGRE-----GIFPRAF 50

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
            A+ Y      +L     ++I V  + E  WW G +  +TG+FPSN++
Sbjct: 4   VAFSYLPQNEDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFI 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQ-LIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           +   VL  + A S ++L++  G  + ++  K +  WW  E  + GK+   G  PASY+++
Sbjct: 1   KRGKVLYDFDAQSDDELTVKEGDVVYILDDKKSKDWWMVENVSTGKE---GVVPASYIEI 57

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213015 cd12139, SH3_Bin1, Src Homology 3 domain of Bridging integrator 1 (Bin1), also called Amphiphysin-2

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 13/67 (19%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQN---AEPGWLAG----------ELRGQTGW 86
          + +A +++ + + DEL  + GD+++V   QN    + GWL G          +L    G 
Sbjct: 4  KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGV 63

Query: 87 FPESYVE 93
          FPE++ E
Sbjct: 64 FPENFTE 70

Bin1 isoforms are localized in many different tissues and may function in intracellular vesicle trafficking. It plays a role in the organization and maintenance of the T-tubule network in skeletal muscle. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Bin1 contains an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR) and a C-terminal SH3 domain. The SH3 domain of Bin1 forms transient complexes with actin, myosin filaments, and CDK5, to facilitate sarcomere organization and myofiber maturation. It also binds dynamin and prevents its self-assembly. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 72

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW---TGTIGDRTGLFPSNYVVP 156
           Y+A YPY   +  +L   + E+  V ++  D W   T     + G+FP NYV P
Sbjct: 2   YVAIYPYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSKIGVFPGNYVAP 55

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212859 cd11926, SH3_SH3RF1_3, Third Src Homology 3 domain of SH3 domain containing ring finger 1, an E3 ubiquitin-protein ligase

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           PYT    ++L L +G++ ++ ++   GW++G      K   +G FP +YV
Sbjct: 7   PYTPRKEDELELRKGEMFLVFERCQDGWFKGTSMHTSK---IGVFPGNYV 53

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the third SH3 domain, located in the middle, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212736 cd11802, SH3_Endophilin_B, Src homology 3 domain of Endophilin-B

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 110 YPYDSTEPGDLTFNQDEVIYVTK---KENDWWTGTIGDRTGLFPSNY 153
           Y YD+ +  +L+   DEVI V +    + D+  G  G + G  P  Y
Sbjct: 6   YDYDAEDSTELSLLADEVITVYELPGMDEDYMMGERGSQRGKVPVAY 52

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 34.6 bits (79), Expect = 0.004
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVI-YVTKKENDWWTG--TIGDRTGLFPSNYVVP 156
            ++A Y Y++    DL+F + E    +   E DWW        + G  PSNYV P
Sbjct: 2   IFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKNGYIPSNYVAP 56

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	290
KOG1029|consensus	1118		100.0
KOG4225|consensus	489		100.0
KOG4348|consensus	627		100.0
KOG1029|consensus	1118		99.97
KOG4226|consensus	379		99.97
KOG4226|consensus	379		99.9
KOG4348|consensus	627		99.88
KOG3601|consensus	222		99.81
KOG4225|consensus	489		99.75
KOG4792|consensus	293		99.74
KOG4792|consensus	293		99.64
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.54
KOG2996|consensus	865		99.51
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.48
KOG3632|consensus	1335		99.42
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.4
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.35
KOG2996|consensus	865		99.3
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.28
KOG2199|consensus	462		99.27
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.25
KOG1118|consensus	366		99.21
KOG2070|consensus	661		99.14
KOG3632|consensus	1335		99.14
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.13
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.12
KOG2070|consensus	661		99.12
KOG0162|consensus	1106		99.12
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.11
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.07
KOG2199|consensus	462		99.06
KOG0162|consensus	1106		99.05
KOG2856|consensus	472		99.0
KOG1118|consensus	366		98.98
KOG3601|consensus	222		98.89
KOG2546|consensus	483		98.72
KOG1702|consensus	264		98.62
KOG3655|consensus	484		98.6
KOG0515|consensus	752		98.57
KOG2546|consensus	483		98.56
KOG1264|consensus	1267		98.56
KOG1843|consensus	473		98.49
KOG2856|consensus	472		98.43
KOG1702|consensus	264		98.39
KOG1264|consensus	1267		98.33
KOG3655|consensus	484		98.32
KOG3875|consensus	362		98.24
KOG0515|consensus	752		98.21
KOG3875|consensus	362		98.17
KOG1451|consensus	812		98.17
KOG3523|consensus	695		98.14
KOG4278|consensus	1157		98.08
KOG3523|consensus	695		98.0
KOG1843|consensus	473		97.97
KOG3725|consensus	375		97.94
KOG2222|consensus	848		97.89
KOG2528|consensus	490		97.61
KOG4773|consensus	386		97.61
KOG3557|consensus	721		97.61
KOG4278|consensus	1157		97.52
KOG3775|consensus	482		97.32
KOG2528|consensus	490		97.28
KOG3775|consensus	482		97.25
KOG3771|consensus	460		97.21
KOG4575|consensus	874		97.2
KOG2222|consensus	848		97.14
KOG4429|consensus	421		97.04
KOG3557|consensus	721		97.0
KOG4773|consensus	386		96.86
KOG0197|consensus	468		96.83
KOG0197|consensus	468		96.74
KOG3725|consensus	375		96.67
KOG3771|consensus	460		96.65
KOG0609|consensus	542		96.56
KOG4429|consensus	421		96.54
KOG4575|consensus	874		96.47
KOG0609|consensus	542		96.22
KOG3565|consensus	640		96.19
KOG1451|consensus	812		95.98
KOG3565|consensus	640		95.31
KOG0199|consensus	1039		94.67
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	94.21
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	94.0
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	93.9
KOG0199|consensus	1039		93.89
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	93.57
COG3103	205	SH3 domain protein [Signal transduction mechanisms	93.53
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	92.5
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	92.08
smart00287	63	SH3b Bacterial SH3 domain homologues.	92.03
PRK10884	206	SH3 domain-containing protein; Provisional	91.98
KOG3705|consensus	580		91.4
smart00287	63	SH3b Bacterial SH3 domain homologues.	91.27
KOG3812|consensus	475		90.65
KOG3705|consensus	580		89.96
PRK10884	206	SH3 domain-containing protein; Provisional	88.51
KOG3812|consensus	475		88.49
KOG0040|consensus	2399		86.5
KOG0040|consensus	2399		86.15

>KOG1029|consensus

Probab=100.00  E-value=1.2e-36  Score=283.98  Aligned_cols=247  Identities=47%  Similarity=0.804  Sum_probs=181.0

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCc--------------
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV--------------  101 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~--------------  101 (290)
                      ....+|+|||.|.+...+||+|..||||.|.+.+...+||+.|++.|+.||||.|||+.++..+.+              
T Consensus       691 ~~~vkyrAly~FeaRs~dEisf~pGDII~V~esq~aEPGWlaGel~gktGWFPenyvEki~~~e~p~~v~Pv~~l~~~~~  770 (1118)
T KOG1029|consen  691 HDTVKYRALYPFEARSHDEISFEPGDIIIVFESQAAEPGWLAGELRGKTGWFPENYVEKIPAVETPGGVPPVQNLPPTMT  770 (1118)
T ss_pred             cceEEEeeecccccCCcccccccCCCEEEEehhccCCcccccceeccccCcCcHHHHhhcccCCCCCCCCchhcCCCCCC
Confidence            446789999999999999999999999999877888999999999999999999999977543210              


Q ss_pred             -----------------------------------------cceEEEEcccCCCCCCCCceecCCCEEEEEeecCCeEEE
Q psy7076         102 -----------------------------------------VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG  140 (290)
Q Consensus       102 -----------------------------------------~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~~~~W~~~  140 (290)
                                                               ..-.|+|+|.|.+..+++|+|.+||+|.|++....||.|
T Consensus       771 psas~nq~a~~ad~~~~~~n~~~~t~~aA~p~~tapg~~eve~lq~iA~y~wrakke~dLsFskgd~I~VlekqemwW~G  850 (1118)
T KOG1029|consen  771 PSASVNQIAVVADTKNESANAMGLTEGAAPPALTAPGQGEVEILQAIALYPWRAKKENDLSFSKGDTITVLEKQEMWWFG  850 (1118)
T ss_pred             cccccccceeecccccchhhccCCCCCCCCccccCCCchhhhhhhHHhhccccccccccccccCCCeeeeehhccceecc
Confidence                                                     112688999999999999999999999999998899999


Q ss_pred             EeCCeeEEecCCCeEecCCCCCCC--CCCCCC--C----------CCCCCCCC--------------------CCCCCCc
Q psy7076         141 TIGDRTGLFPSNYVVPYEAQTPAA--AVDPTP--A----------TPVVKDTP--------------------TKSEGVT  186 (290)
Q Consensus       141 ~~~g~~G~~P~~~v~~~~~~~~~~--~~~~~~--~----------~~~~~~~~--------------------~~~~~~~  186 (290)
                      ...|+.||||.+||++++..+...  ..++..  +          ++..+...                    +.++.+.
T Consensus       851 ~v~g~~GwFPksYVk~~~~~t~st~~~~s~es~sae~p~~~~~~a~~taa~v~~qeq~ya~~~~~e~vEq~dlt~~egd~  930 (1118)
T KOG1029|consen  851 EVAGEIGWFPKSYVKEVGAITGSTTKIESPESLSAEAPGAAASDATPTAAPVAPQEQLYAVYPYFEAVEQGDLTFHEGDE  930 (1118)
T ss_pred             cccCccCcCcHHhhhhccccccccccccCcccccccCccccccccCcccccccccceeEEEecccccccCCCccccccce
Confidence            999999999999999766432211  111100  0          00000000                    0000000


Q ss_pred             ------------ccCccCCCCCCCC-----CCCCCcccccCCCCCCCCCCceEEeccCCCCCCCceecCCCCEEEEEEcC
Q psy7076         187 ------------RTSSVSGGSRSGT-----PDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT  249 (290)
Q Consensus       187 ------------~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~  249 (290)
                                  .+.......-|+.     .+-....+++...+.++.++++.++.+|.+..++.|+|..|++|.|.++.
T Consensus       931 iLvtekdgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k~g~~~kkpeiAqVia~yvAs~peQLsla~GqlIlIrkKn 1010 (1118)
T KOG1029|consen  931 ILVTEKDGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPKQGPTPKKPEIAQVIADYVASGPEQLSLAPGQLILIRKKN 1010 (1118)
T ss_pred             EEEeeccCceeccccCCccccccccceeeehhccCCCCCCCCCCCCCCchhhhhhhhhhccCchhccccCccEEEEEecC
Confidence                        0000000000100     00001111112233456789999999999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         250 TTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       250 ~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..|||.|++.++|++++.||||++||+++...+
T Consensus      1011 ~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s 1043 (1118)
T KOG1029|consen 1011 ASGWWEGELQARGKKRQIGWFPAEYVKVLEPGS 1043 (1118)
T ss_pred             CCccchhhHhhcCCccccccccHHHhhhccCCC
Confidence            999999999999999999999999999987653

>KOG4225|consensus

Probab=100.00  E-value=4.9e-33  Score=246.65  Aligned_cols=234  Identities=26%  Similarity=0.514  Sum_probs=163.6

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCC---------Ccc--ceEE
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG---------EVV--PEYY  106 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~---------~~~--~~~~  106 (290)
                      ...++|+|+|.++...||.|++||||.|+.  +.+.+|+.|+.+|+.|+||.+||+.+....         .+.  ...+
T Consensus       230 ~~~aralf~F~~qt~kEL~~~kGDIVyI~r--kvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~~P~q~~~~g~a  307 (489)
T KOG4225|consen  230 KRAARALFDFEAQTPKELPFNKGDIVYILR--KVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARPPPQQVLEQGEA  307 (489)
T ss_pred             cchhhheeccccCCccccccCCCCEEEEEe--eccCceeeeeecceecceechheeecCcccccCcCCCCcccccccccc
Confidence            345899999999999999999999999963  488999999999999999999999887621         111  2348


Q ss_pred             EEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeC--CeeEEecCCCeEecCCCCCCCCCC--CCCCCC--------
Q psy7076         107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG--DRTGLFPSNYVVPYEAQTPAAAVD--PTPATP--------  173 (290)
Q Consensus       107 ~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~--g~~G~~P~~~v~~~~~~~~~~~~~--~~~~~~--------  173 (290)
                      +|.|+|.+....||++++|+.|.++.. +..|.+|++.  ++.|+||.+||+.+..........  ..+.++        
T Consensus       308 ~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~rqgifP~SyVev~~~~~~~~~~~~~~~p~~p~~s~~~~~  387 (489)
T KOG4225|consen  308 IAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTNRQGIFPASYVEVIKSPKLELPLDYPDLPIPPRSSNELRP  387 (489)
T ss_pred             cccCCCCCCCchhcccccCceEEEEEeccCceeeccccccccccccchhHhhhhhccccccccccCCCCCCcccchhhcc
Confidence            999999999999999999999999887 7889999994  899999999999987552211110  000000        


Q ss_pred             CCCCCCCCCCCCcccCccCCCCCC-CCCCCCCcccccCCCCCCCCCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCC
Q psy7076         174 VVKDTPTKSEGVTRTSSVSGGSRS-GTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG  252 (290)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~g  252 (290)
                      ........+.....++...+.+.. ..+-.......... .......-++|||.|.++.++||-|..||+|.|+++.++|
T Consensus       388 ~~~~s~~~~~~~~~t~~~~q~~~n~~qepr~~~~~~~~~-qt~~~~l~yrAly~Y~pqnedeLEl~egDii~VmeKcddg  466 (489)
T KOG4225|consen  388 LSEDSMKNAWPQTHTQSSTQPPENFPQEPRVTEKNDAHS-QTSSEPLKYRALYSYRPQNEDELELREGDIIDVMEKCDDG  466 (489)
T ss_pred             cccchhhhcccccccccccCCCCCcccccccccccCccc-CCCCCcccceeccccCCCCchhheeccCCEEeeeecccCc
Confidence            000011111111112222111110 00000000000001 1112233489999999999999999999999999999999


Q ss_pred             eEEEEEcCCCCCceeeEecCCceEE
Q psy7076         253 WWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       253 W~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      |+.|+...+   |..|.||.|||+.
T Consensus       467 WfvGts~rt---g~fGtFPgnyV~~  488 (489)
T KOG4225|consen  467 WFVGTSRRT---GKFGTFPGNYVKR  488 (489)
T ss_pred             ceeccceec---ccccccCcccccc
Confidence            999976544   4599999999975

>KOG4348|consensus

Probab=100.00  E-value=7.1e-34  Score=251.39  Aligned_cols=233  Identities=27%  Similarity=0.547  Sum_probs=164.7

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC----CC---------------
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET----GE---------------  100 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~----~~---------------  100 (290)
                      .|++-|||.+++++||.++.|+||.-+.  ..+.|||.|+++|++|+||.|||..+...    ..               
T Consensus         3 d~ive~dy~a~hddelti~vgeii~nvk--k~e~gw~egelngrrg~fpdnfV~eik~e~k~d~l~nk~~r~~l~q~~s~   80 (627)
T KOG4348|consen    3 DYIVEYDYDAVHDDELTIRVGEIIRNVK--KLEEGWLEGELNGRRGQFPDNFVVEIKVEFKDDDLVNKLSRDSLVQMTSR   80 (627)
T ss_pred             ceeeecccccccCceeeEeHHHHHHhhh--hhccceeeceeccccccCCchhhhhhhhhcccccccccccccchhhcccC
Confidence            5889999999999999999999999643  36899999999999999999999755432    00               


Q ss_pred             -----------------ccceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCCCCC
Q psy7076         101 -----------------VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTP  162 (290)
Q Consensus       101 -----------------~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~~~~  162 (290)
                                       .....|++.|.|.++.++||.|+.||+|.|+.. ..|||.|.++|+.|+||+|||.++...+.
T Consensus        81 n~l~~~q~v~rtn~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sd  160 (627)
T KOG4348|consen   81 NPLTVHQQVERTNPPPQPQARICVVTFAYSPQNDDELELKVGDIIELISEVEEGWWKGKLNGKVGMFPSNFVKELPTPSD  160 (627)
T ss_pred             CCccccCcccccCCCCCccceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhhhhhceecCcccccchhhceecCCCCc
Confidence                             034579999999999999999999999999987 79999999999999999999999886655


Q ss_pred             CCCCCCCC--CCCC----CCCCC---CCCCCCcc--cCccCCCCC-------------------CCCCC----------C
Q psy7076         163 AAAVDPTP--ATPV----VKDTP---TKSEGVTR--TSSVSGGSR-------------------SGTPD----------F  202 (290)
Q Consensus       163 ~~~~~~~~--~~~~----~~~~~---~~~~~~~~--~~~~~~~~~-------------------~~~~~----------~  202 (290)
                      ....+..+  +...    ....+   ..++....  +|++.+.-.                   ...+.          +
T Consensus       161 e~~~aqd~~~S~stlagst~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l  240 (627)
T KOG4348|consen  161 ESAAAQDPAASASTLAGSTARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSAL  240 (627)
T ss_pred             chhhhcCcccchhhhcCcCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhcc
Confidence            22111111  1000    00111   11111111  121111000                   00000          0


Q ss_pred             CCcccccCC-----CCCCCCCCceEEeccCCCCCCCceecCCCCEEEEEEc--CCCCeEEEEEcCCCCCceeeEecCCce
Q psy7076         203 SSFTAAQAG-----TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPASYV  275 (290)
Q Consensus       203 ~~~~~~~~~-----~~~~~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~~~~G~fP~~~v  275 (290)
                      +..+...-.     .-.-+..+||+++|.|+++..+||.|+.||+|.++.+  .+-|||+|++++  +   .|+||-|||
T Consensus       241 ~asT~s~d~tktd~~~~tKtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnG--k---~GvFPDNFv  315 (627)
T KOG4348|consen  241 SASTQSVDITKTDTAETTKTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNG--K---KGVFPDNFV  315 (627)
T ss_pred             CccccCccccccccccchhhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecC--c---cccCCchhh
Confidence            000000000     0112457899999999999999999999999988887  577999999984  3   799999999


Q ss_pred             EEec
Q psy7076         276 KVMG  279 (290)
Q Consensus       276 ~~~~  279 (290)
                      +.+.
T Consensus       316 ~lv~  319 (627)
T KOG4348|consen  316 ELVQ  319 (627)
T ss_pred             hhcC
Confidence            9875

>KOG1029|consensus

Probab=99.97  E-value=6.5e-32  Score=252.43  Aligned_cols=239  Identities=34%  Similarity=0.669  Sum_probs=157.9

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCC-------------------
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGE-------------------  100 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~-------------------  100 (290)
                      .|.|+|.|.+..+.+|+|.+||+|+|++.   ...||+|+..|+.||||.+||+.+.-.+.                   
T Consensus       815 q~iA~y~wrakke~dLsFskgd~I~Vlek---qemwW~G~v~g~~GwFPksYVk~~~~~t~st~~~~s~es~sae~p~~~  891 (1118)
T KOG1029|consen  815 QAIALYPWRAKKENDLSFSKGDTITVLEK---QEMWWFGEVAGEIGWFPKSYVKEVGAITGSTTKIESPESLSAEAPGAA  891 (1118)
T ss_pred             hHHhhccccccccccccccCCCeeeeehh---ccceecccccCccCcCcHHhhhhccccccccccccCcccccccCcccc
Confidence            79999999999999999999999999864   46799999999999999999994432210                   


Q ss_pred             -----------ccceEEEEcccC-CCCCCCCceecCCCEEEEEeecCCeEEEEeCCeeEEecCC-CeEecCCCCCCCC-C
Q psy7076         101 -----------VVPEYYIAAYPY-DSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSN-YVVPYEAQTPAAA-V  166 (290)
Q Consensus       101 -----------~~~~~~~a~~~y-~~~~~~eL~~~~G~~v~v~~~~~~W~~~~~~g~~G~~P~~-~v~~~~~~~~~~~-~  166 (290)
                                 .+.+.+.++|.| ++.+.++|.|..|+.|.|++++++||.++++++.|.||++ |+.+.+..+.... .
T Consensus       892 ~~~a~~taa~v~~qeq~ya~~~~~e~vEq~dlt~~egd~iLvtekdgeww~gt~~~r~gifPan~y~r~~~q~gs~Tp~k  971 (1118)
T KOG1029|consen  892 ASDATPTAAPVAPQEQLYAVYPYFEAVEQGDLTFHEGDEILVTEKDGEWWTGTCGDREGIFPANYYVRPKDQEGSGTPPK  971 (1118)
T ss_pred             ccccCcccccccccceeEEEecccccccCCCccccccceEEEeeccCceeccccCCccccccccceeeehhccCCCCCCC
Confidence                       023445555554 4588899999999999999999999999999999999999 6666553321110 0


Q ss_pred             -CCCCCCCCCCCCCCC--CCCCcccCc------------cCC-----CCCCCCC-CCCCcc-------c--ccCCCCCCC
Q psy7076         167 -DPTPATPVVKDTPTK--SEGVTRTSS------------VSG-----GSRSGTP-DFSSFT-------A--AQAGTPKGK  216 (290)
Q Consensus       167 -~~~~~~~~~~~~~~~--~~~~~~~~~------------~~~-----~~~~~~~-~~~~~~-------~--~~~~~~~~~  216 (290)
                       .+.+..|..+.....  .......+.            .++     -.+.+.. .+--++       .  ....+|...
T Consensus       972 ~g~~~kkpeiAqVia~yvAs~peQLsla~GqlIlIrkKn~sGWWeGELqarGkkrq~GWFPa~yVKvL~~~s~raTPa~~ 1051 (1118)
T KOG1029|consen  972 QGPTPKKPEIAQVIADYVASGPEQLSLAPGQLILIRKKNASGWWEGELQARGKKRQIGWFPAEYVKVLEPGSGRATPATR 1051 (1118)
T ss_pred             CCCCCCCchhhhhhhhhhccCchhccccCccEEEEEecCCCccchhhHhhcCCccccccccHHHhhhccCCCCcCCCCCC
Confidence             000000100000000  000000000            000     0000000 000000       0  001223222


Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE-ecCCCcccc
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV-MGGGGISIQ  286 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~-~~~~~~~~~  286 (290)
                      .-..++++|||.++.+|||+|++||+|.|+.+.+..||.|++++     ..|+||+|||.. .++..++.+
T Consensus      1052 ~v~qviamYdY~AqndDELsF~kgdiI~VlnkdepeWW~Ge~ng-----~sGLFPSNYV~k~ttd~dpsqq 1117 (1118)
T KOG1029|consen 1052 PVCQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPEWWSGERNG-----KSGLFPSNYVQKQTTDGDPSQQ 1117 (1118)
T ss_pred             ccceeEEeeccccCCcccccccCCCEEEecCCCChhhhcccccC-----ccccCccccccccccCCChhhc
Confidence            23557899999999999999999999999999999999999883     389999999955 455555543

>KOG4226|consensus

Probab=99.97  E-value=4.6e-31  Score=221.29  Aligned_cols=205  Identities=21%  Similarity=0.444  Sum_probs=157.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccCCCc----------------
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETGEV----------------  101 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~~~~----------------  101 (290)
                      ..++|.|||.+++..||.+++.+.+.++.   +..-||+++. ..+.|+||+|||+..+.....                
T Consensus         5 ~~vvak~dy~aq~~qeldikkner~~lld---dsk~wwrvrns~n~tgyvpsnyverkn~~~~~si~knlkd~~g~kt~~   81 (379)
T KOG4226|consen    5 VIVVAKWDYTAQQDQELDIKKNERLWLLD---DSKTWWRVRNSANRTGYVPSNYVERKNSLKKGSIVKNLKDTLGLKTRR   81 (379)
T ss_pred             EEEEEEechhcccchhccccccceEEEEc---CCccceeeecccccCCcccchhhhcccchhhhHHHHhhhhcccccccc
Confidence            46789999999999999999999999863   4667999998 899999999999865443110                


Q ss_pred             ------------------------cceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEe
Q psy7076         102 ------------------------VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP  156 (290)
Q Consensus       102 ------------------------~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~  156 (290)
                                              ....+++.|.|.++.++||++.+|..|.|+++ .+|||+|..+|+.||||++||.+
T Consensus        82 k~s~~~~~~sp~~d~~~ppd~~~~~~t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDGWWrG~~ng~VGWFPSNYv~E  161 (379)
T KOG4226|consen   82 KTSARDASPSPSTDAEYPPDRIYDLNTPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDGWWRGSYNGQVGWFPSNYVTE  161 (379)
T ss_pred             CCCccccCCCCCccccCCcchhhhcCCceEEEEeeccccccccccccCcEEEEEEeccCcceecccCCeeccccccceeh
Confidence                                    22347788999999999999999999999998 68999999999999999999988


Q ss_pred             cCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCCCCCCcee
Q psy7076         157 YEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLS  236 (290)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs  236 (290)
                      ........+.+..                        ..+++        ++....+......+++|||.|.+...+||+
T Consensus       162 ~~ds~~gd~~s~~------------------------~~~~~--------A~a~n~~~s~vl~vVvaLYsFsssndeELs  209 (379)
T KOG4226|consen  162 EVDSAAGDSPSFL------------------------SLRKA--------ASASNGQGSRVLHVVVALYSFSSSNDEELS  209 (379)
T ss_pred             hccccccCCccce------------------------ecchh--------hcccCCCCceEEEEEEEEecccCCChhhcc
Confidence            6533111000000                        00000        000011111334568999999999999999


Q ss_pred             cCCCCEEEEEEc--CCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         237 LSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       237 ~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      |++||.+.|+++  .+++||.++..    .|++|++|.|||.++....
T Consensus       210 FeKGerleivd~Pe~DPdWwkarn~----~G~vGLVPrNYv~vl~d~~  253 (379)
T KOG4226|consen  210 FEKGERLEIVDKPENDPDWWKARNA----RGQVGLVPRNYVVVLSDGP  253 (379)
T ss_pred             cccCceeEeccCCCCCchHHhhccc----CCccceeecceEEEeccCc
Confidence            999999999997  68899999854    3679999999999986543

>KOG4226|consensus

Probab=99.90  E-value=6e-24  Score=178.57  Aligned_cols=121  Identities=31%  Similarity=0.622  Sum_probs=106.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCc-----------------
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV-----------------  101 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~-----------------  101 (290)
                      ..+++.|.|.++.++||++.+|+.|.|+++  ..+|||+|+.+|+.||||+|||.........                 
T Consensus       108 t~AvVKf~Y~a~~eDELsLtKGtrv~vmEK--ssDGWWrG~~ng~VGWFPSNYv~E~~ds~~gd~~s~~~~~~~A~a~n~  185 (379)
T KOG4226|consen  108 TPAVVKFNYVAEREDELSLTKGTRVTVMEK--SSDGWWRGSYNGQVGWFPSNYVTEEVDSAAGDSPSFLSLRKAASASNG  185 (379)
T ss_pred             CceEEEEeeccccccccccccCcEEEEEEe--ccCcceecccCCeeccccccceehhccccccCCccceecchhhcccCC
Confidence            348999999999999999999999999765  7899999999999999999999865543210                 


Q ss_pred             ----cceEEEEcccCCCCCCCCceecCCCEEEEEee---cCCeEEEEe-CCeeEEecCCCeEecCCCC
Q psy7076         102 ----VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTI-GDRTGLFPSNYVVPYEAQT  161 (290)
Q Consensus       102 ----~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~---~~~W~~~~~-~g~~G~~P~~~v~~~~~~~  161 (290)
                          ....++|+|.|.+..+.||+|++|+.+.|+++   +++||.+++ +|++|++|.+||..+....
T Consensus       186 ~~s~vl~vVvaLYsFsssndeELsFeKGerleivd~Pe~DPdWwkarn~~G~vGLVPrNYv~vl~d~~  253 (379)
T KOG4226|consen  186 QGSRVLHVVVALYSFSSSNDEELSFEKGERLEIVDKPENDPDWWKARNARGQVGLVPRNYVVVLSDGP  253 (379)
T ss_pred             CCceEEEEEEEEecccCCChhhcccccCceeEeccCCCCCchHHhhcccCCccceeecceEEEeccCc
Confidence                35678899999999999999999999999987   678999999 8999999999999987553

>KOG4348|consensus

Probab=99.88  E-value=3.5e-23  Score=183.81  Aligned_cols=128  Identities=27%  Similarity=0.649  Sum_probs=111.5

Q ss_pred             CCCCCCCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCc---------
Q psy7076          31 DPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV---------  101 (290)
Q Consensus        31 ~~~~~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~---------  101 (290)
                      ++...+..++|+|+|.|.++++|||.|+.||+|.|+  ...++|||.|.++|+.|+||.|||..++.....         
T Consensus        93 n~~~q~~~r~c~v~f~Y~pqndDELelkVGDiIeli--~eVEeGWw~G~Lngk~GmFPsNFVkel~~~sde~~~aqd~~~  170 (627)
T KOG4348|consen   93 NPPPQPQARICVVTFAYSPQNDDELELKVGDIIELI--SEVEEGWWKGKLNGKVGMFPSNFVKELPTPSDESAAAQDPAA  170 (627)
T ss_pred             CCCCCccceeEEEEEeecCCCCceeeeeeccHHHhh--hHhhhhhhhceecCcccccchhhceecCCCCcchhhhcCccc
Confidence            344455568999999999999999999999999995  348999999999999999999999977654210         


Q ss_pred             --------------------------------------------------------------------------------
Q psy7076         102 --------------------------------------------------------------------------------  101 (290)
Q Consensus       102 --------------------------------------------------------------------------------  101 (290)
                                                                                                      
T Consensus       171 S~stlagst~~~ps~s~~SE~a~gsv~qPKkI~g~gfgdIfk~~pVklr~rt~~sete~~p~~~~i~~~l~asT~s~d~t  250 (627)
T KOG4348|consen  171 SASTLAGSTARTPSKSIGSEVAMGSVTQPKKIDGTGFGDIFKPAPVKLRLRTKFSETEKKPEKPFISSALSASTQSVDIT  250 (627)
T ss_pred             chhhhcCcCCCCCcccccchhhcccccCcccccCCCcccccCCccceecccccccccccccccchhhhccCccccCcccc
Confidence                                                                                            


Q ss_pred             ---------cceEEEEcccCCCCCCCCceecCCCEEEEEee---cCCeEEEEeCCeeEEecCCCeEecCCC
Q psy7076         102 ---------VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEAQ  160 (290)
Q Consensus       102 ---------~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~---~~~W~~~~~~g~~G~~P~~~v~~~~~~  160 (290)
                               ...+|+++|.|+++.++||.|+.||+|.++.+   +.|||+|.++|+.|+||-|||+.+...
T Consensus       251 ktd~~~~tKtKeycrv~F~Ye~qndDELt~KEgdil~lItK~cgdaGWweGELnGk~GvFPDNFv~lv~~~  321 (627)
T KOG4348|consen  251 KTDTAETTKTKEYCRVKFVYEPQNDDELTLKEGDILILITKNCGDAGWWEGELNGKKGVFPDNFVELVQVP  321 (627)
T ss_pred             ccccccchhhhhheeeeeeecCCCccceeeccccEEEEecccccccceeeeeecCccccCCchhhhhcCCc
Confidence                     34689999999999999999999999998876   578999999999999999999987754

>KOG3601|consensus

Probab=99.81  E-value=7.9e-21  Score=154.80  Aligned_cols=216  Identities=20%  Similarity=0.257  Sum_probs=154.5

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCccceEEEEcccCCCCCCCC
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGD  119 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~~~~~~~a~~~y~~~~~~e  119 (290)
                      .++++++|.+...+||+|.+||.|.++.. .++-+|+..+++|..|++|.||++..      ..+.+.+++++..++...
T Consensus         2 ea~a~n~f~a~i~dELsFlkg~~lk~l~~-~d~~nw~~ael~g~~g~~P~Nai~~~------~~~wve~~i~r~~ae~~l   74 (222)
T KOG3601|consen    2 EAVAKNDFLAGIRDELSFLKGDNLKILNM-EDDINWYKAELDGPEGFIPKNAIRMK------PHEWVEGLIPRPLAEDLL   74 (222)
T ss_pred             chhhhhhhhhcCcccceeecCCceEecch-HHhhhhhhHhhcCccccCcccccccc------cccceecccccchhhhhh
Confidence            46789999999999999999999999754 34567999999999999999999754      345778899999998888


Q ss_pred             ceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCCCCCCC-CCCCCCCCCCCCCCCCCCCCCcccCccCCCCCC
Q psy7076         120 LTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAA-AVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRS  197 (290)
Q Consensus       120 L~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (290)
                      +..+.|+.+..+.. ..||+.+.++...|.++.++|++.....-.- +.-.... ++ ...     ..+.+++.  ....
T Consensus        75 ~~~~~G~fl~r~s~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnsln-pl-v~Y-----~rt~s~~r--~~qi  145 (222)
T KOG3601|consen   75 SKKRDGDFLIRLSESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLN-PL-VSY-----HRTASQSR--NQQI  145 (222)
T ss_pred             hccCcchhhhhhhhcCcccccccccCCCCceeccccccCccccccchhhccCCC-CC-ccc-----Cccccccc--ceee
Confidence            88889999887776 7899999999999999999997754221100 0000000 00 000     00000000  0000


Q ss_pred             CCCCCCCcccccCCCCCCCCCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         198 GTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                         .+..+......-+.+....|..++|||+++.+.+|.|++||+|.|+...+.-||.|...++     .|+||++||..
T Consensus       146 ---~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~-----agiFpagyv~p  217 (222)
T KOG3601|consen  146 ---FLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGR-----AGIFPAGYVAP  217 (222)
T ss_pred             ---eecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCc-----eeeecCccccc
Confidence               0111110001111123467889999999999999999999999999999999999998733     89999999977


Q ss_pred             ec
Q psy7076         278 MG  279 (290)
Q Consensus       278 ~~  279 (290)
                      ..
T Consensus       218 ~d  219 (222)
T KOG3601|consen  218 SD  219 (222)
T ss_pred             cc
Confidence            43

>KOG4225|consensus

Probab=99.75  E-value=2.8e-18  Score=153.05  Aligned_cols=133  Identities=26%  Similarity=0.594  Sum_probs=108.2

Q ss_pred             eEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7076         104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKS  182 (290)
Q Consensus       104 ~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (290)
                      ..++|+|+|.++...||.|.+||+|.|+++ +..|+.|..+|+.|+||++||+.+..........+              
T Consensus       231 ~~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~nWyeGEhhGr~GifP~sYvE~~~~~e~~qP~~~--------------  296 (489)
T KOG4225|consen  231 RAARALFDFEAQTPKELPFNKGDIVYILRKVDQNWYEGEHHGRVGIFPASYVEILTPREKAQPARP--------------  296 (489)
T ss_pred             chhhheeccccCCccccccCCCCEEEEEeeccCceeeeeecceecceechheeecCcccccCcCCC--------------
Confidence            357899999999999999999999999988 78899999999999999999999875432100000              


Q ss_pred             CCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCC
Q psy7076         183 EGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG  262 (290)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g  262 (290)
                                          ++      .+.  .....++|.|+|.+..+.||++++||.|.++...+..|.+|.+.+.+
T Consensus       297 --------------------~P------~q~--~~~g~a~A~y~F~~~s~~Els~~kge~v~L~r~vd~nw~eG~i~g~~  348 (489)
T KOG4225|consen  297 --------------------PP------QQV--LEQGEAIAKYNFNADSPVELSLRKGERVTLTRQVDENWYEGKIPGTN  348 (489)
T ss_pred             --------------------Cc------ccc--cccccccccCCCCCCCchhcccccCceEEEEEeccCceeeccccccc
Confidence                                00      000  01122889999999999999999999999999999999999998665


Q ss_pred             CCceeeEecCCceEEecCC
Q psy7076         263 KKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       263 ~~~~~G~fP~~~v~~~~~~  281 (290)
                      +   .|+||.+||+++.+.
T Consensus       349 r---qgifP~SyVev~~~~  364 (489)
T KOG4225|consen  349 R---QGIFPASYVEVIKSP  364 (489)
T ss_pred             c---ccccchhHhhhhhcc
Confidence            4   799999999998653

>KOG4792|consensus

Probab=99.74  E-value=3.1e-18  Score=140.65  Aligned_cols=151  Identities=26%  Similarity=0.430  Sum_probs=116.2

Q ss_pred             cccccCCCCCCCCCC---------CCCCCCCCCCCCC----------CccEEEEeccccCCCCCCCccCCCCEEEEcccc
Q psy7076           9 ANSWGDNAWDNAPAA---------DTWTASTDPTGVS----------EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ   69 (290)
Q Consensus         9 ~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~----------~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~   69 (290)
                      +.++|||.|...|+.         ++++.-.......          ....++++|||.++..++|.|++||++.|+.  
T Consensus        76 ~~rIgdQ~Fd~lPaLL~fykihyLdtttLi~p~~r~~~~~~~~~~~~~~~~vr~~fdF~G~deeDLPFkkGeiL~I~~--  153 (293)
T KOG4792|consen   76 RLRIGDQEFDSLPALLEFYKIHYLDTTTLIEPAKRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGEILRIRD--  153 (293)
T ss_pred             eeeeccccccchHHHHhheeEeeeccccccccccccccccCcccchhhhhheeeeeccCCCccccCCcccCcEEEEec--
Confidence            578999999999995         3333222211111          1345778999999999999999999999964  


Q ss_pred             CCCCCeEEEee-CCeeeeccCCcccCCccCCCc---------------------------------------cceEEEEc
Q psy7076          70 NAEPGWLAGEL-RGQTGWFPESYVEPCDETGEV---------------------------------------VPEYYIAA  109 (290)
Q Consensus        70 ~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~~~~---------------------------------------~~~~~~a~  109 (290)
                      +.+..||..+. .|++|++|.+||+........                                       ...+++++
T Consensus       154 K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~ga~e~si~q~~~g~e~~s~a~~s~~~~l~l~~~lPa~Arv~  233 (293)
T KOG4792|consen  154 KPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGGASESSIPQSGGGAERFSSASTSSDTPLPLQQNLPAYARVI  233 (293)
T ss_pred             CcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCCcccccCCCCCCCCCCCCCCCcccCCcCccccCCChheeee
Confidence            47888999998 999999999999865432100                                       23466777


Q ss_pred             ccCCCCCC--CCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCCCC
Q psy7076         110 YPYDSTEP--GDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQT  161 (290)
Q Consensus       110 ~~y~~~~~--~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~~~  161 (290)
                      ++..+..-  -.|.+++|++|.|.+. .+|-|+++++|+.|.||..||+..+...
T Consensus       234 q~RVPnAYDkTaL~levGdiVkVTk~ninGqwegElnGk~G~fPfThvrf~d~~~  288 (293)
T KOG4792|consen  234 QKRVPNAYDKTALALEVGDIVKVTKKNINGQWEGELNGKIGHFPFTHVRFTDVQN  288 (293)
T ss_pred             hhcCCCccChhhhhhhcCcEEEEEeeccCceeeeeecCccccccceeEEeeccCC
Confidence            76555433  3499999999999998 5999999999999999999999887543

>KOG4792|consensus

Probab=99.64  E-value=7.2e-16  Score=126.82  Aligned_cols=159  Identities=25%  Similarity=0.466  Sum_probs=107.3

Q ss_pred             ceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEe-CCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCC
Q psy7076         103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPT  180 (290)
Q Consensus       103 ~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (290)
                      ..++.++|+|.+.+..+|.|++|+++.++.+ +..||.+++ .|++|++|..||+.........+.-...     +.+. 
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeqWW~Arns~Gk~GmIPvpYVe~~~~~~~~~~~~~~g-----a~e~-  197 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQWWNARNSEGKRGMIPVPYVEKYRPASASVSALIGG-----ASES-  197 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHHhhhhhccCCcccceechHHHhhhhhhcccccccCC-----cccc-
Confidence            4567789999999999999999999999988 578999999 8999999999999877544111000000     0000 


Q ss_pred             CCCCCcccCccCCCCC-CCCCCCCCc----ccccCCCCCCCCCCceEEeccCCC--CCCCceecCCCCEEEEEEcCCCCe
Q psy7076         181 KSEGVTRTSSVSGGSR-SGTPDFSSF----TAAQAGTPKGKKPEIATVLAPYTA--TSSEQLSLSRGQLIMIRKKTTTGW  253 (290)
Q Consensus       181 ~~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~a~~dy~~--~~~~eLs~~~Gd~i~v~~~~~~gW  253 (290)
                                 ++++. ...+..+..    ..+...++  .-+.+++++.+-.+  -+...|.++.||+|.|.+++.+|-
T Consensus       198 -----------si~q~~~g~e~~s~a~~s~~~~l~l~~--~lPa~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ninGq  264 (293)
T KOG4792|consen  198 -----------SIPQSGGGAERFSSASTSSDTPLPLQQ--NLPAYARVIQKRVPNAYDKTALALEVGDIVKVTKKNINGQ  264 (293)
T ss_pred             -----------cCCCCCCCCCCCCCCCcccCCcCcccc--CCChheeeehhcCCCccChhhhhhhcCcEEEEEeeccCce
Confidence                       00000 000000000    00001111  34567788876543  345589999999999999999999


Q ss_pred             EEEEEcCCCCCceeeEecCCceEEecCCCccc
Q psy7076         254 WEGELQAKGKKRQVGWFPASYVKVMGGGGISI  285 (290)
Q Consensus       254 ~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~~  285 (290)
                      |+|++++  +   .|.||..||+......++.
T Consensus       265 wegElnG--k---~G~fPfThvrf~d~~~~de  291 (293)
T KOG4792|consen  265 WEGELNG--K---IGHFPFTHVRFTDVQNPDE  291 (293)
T ss_pred             eeeeecC--c---cccccceeEEeeccCCcCc
Confidence            9999983  3   7999999999876655544

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.54  E-value=4.9e-15  Score=95.87  Aligned_cols=49  Identities=47%  Similarity=0.927  Sum_probs=43.6

Q ss_pred             EeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCccc
Q psy7076          43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE   93 (290)
Q Consensus        43 al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~   93 (290)
                      |+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEK--SDDGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEE--SSTSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEe--CCCCEEEEEECCEEEEECHHhCC
Confidence            79999999999999999999999743  68999999999999999999985

...

>KOG2996|consensus

Probab=99.51  E-value=3.6e-14  Score=130.82  Aligned_cols=125  Identities=26%  Similarity=0.551  Sum_probs=102.6

Q ss_pred             CCCCCccEEEEeccccCCCC------CCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccCCCc---
Q psy7076          33 TGVSEYRRYRAIYEFVSRNG------DELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDETGEV---  101 (290)
Q Consensus        33 ~~~~~~~~~~al~~~~~~~~------~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~~~~---  101 (290)
                      ...+|.+++.++..|.+..+      --|.+..||++.++ .-+..+.||.|+.  .+.+||||++-|++.+..+..   
T Consensus       599 rn~~GLpkm~~vq~ysg~p~Pag~igP~l~~~~gdvlel~-~~d~~s~~w~gr~~~sr~sg~fpss~vkp~~~vpr~~~~  677 (865)
T KOG2996|consen  599 RNRPGLPKMDVVQNYSGIPPPAGSIGPRLVLQEGDVLELL-KGDAESSWWEGRNHGSRESGNFPSSTVKPCPSVPRQQDY  677 (865)
T ss_pred             cCCCCCcchhhhhccCCCCCCCccCCCceEecCCceeehh-cCCCCCcccccCCccCCccCCCCccccCcCCCCCCCCCC
Confidence            33567889999999988643      34679999999987 4456788999997  788999999999877654310   


Q ss_pred             --------------------------------------------------------------------------------
Q psy7076         102 --------------------------------------------------------------------------------  101 (290)
Q Consensus       102 --------------------------------------------------------------------------------  101 (290)
                                                                                                      
T Consensus       678 ~~~d~s~~~WyaG~MERaqaes~Lk~~~ngT~LVR~r~kea~e~AISikynnevKHikI~~~dg~~~i~E~k~F~sl~EL  757 (865)
T KOG2996|consen  678 VPTDYSEFPWYAGEMERAQAESTLKNRPNGTYLVRYRTKEAKEFAISIKYNNEVKHIKIETNDGKVHITEDKKFNSLVEL  757 (865)
T ss_pred             CccchhhhhhhcchHhhhhhhhHhhcCCCceEEEEecccchhheeEEEEeccccceEEEEecCCeEEechhhhhhhHHHH
Confidence                                                                                            


Q ss_pred             ----------------------------------------------cceEEEEcccCCCCCCCCceecCCCEEEEEee--
Q psy7076         102 ----------------------------------------------VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--  133 (290)
Q Consensus       102 ----------------------------------------------~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~--  133 (290)
                                                                    ....++|-|||.+.+-.+|+|+.||+|.++.+  
T Consensus       758 VeyYq~~sLke~Fk~LDTtLk~Pyke~e~sa~~~~~~~~~sv~s~~~~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g  837 (865)
T KOG2996|consen  758 VEYYQSHSLKEIFKALDTTLKFPYKEPEHSAGQRGNRAGNSVLSPKVVGTAVARYDFCARDMRELSLKEGDVVKIYDKVG  837 (865)
T ss_pred             HHHHHhccHHHHHHHhhhhhcCCCcChhhhhhhccccccccccCcceeeeeeeccccCCCchhhcccccCCEEEEehhcc
Confidence                                                          23457788899999999999999999999876  


Q ss_pred             -cCCeEEEEeCCeeEEecCCCeEecC
Q psy7076         134 -ENDWWTGTIGDRTGLFPSNYVVPYE  158 (290)
Q Consensus       134 -~~~W~~~~~~g~~G~~P~~~v~~~~  158 (290)
                       +.|||.|..+|+.||||++||++..
T Consensus       838 ~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  838 EDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             ccCceecceecCcccccccccccccC
Confidence             5899999999999999999998754

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.48  E-value=6e-14  Score=90.77  Aligned_cols=49  Identities=37%  Similarity=0.817  Sum_probs=43.3

Q ss_pred             EeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceE
Q psy7076         223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK  276 (290)
Q Consensus       223 a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~  276 (290)
                      |+|+|.++.++||+|++||+|.|+.+.+++||+|++.     |+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDGWWYGRNT-----GRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTSEEEEEET-----TEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCCEEEEEEC-----CEEEEECHHhCC
Confidence            6899999999999999999999999999999999973     358999999996

...

>KOG3632|consensus

Probab=99.42  E-value=2.3e-13  Score=131.75  Aligned_cols=122  Identities=30%  Similarity=0.547  Sum_probs=102.8

Q ss_pred             ccEEEEeccccCC--------CCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCc--------
Q psy7076          38 YRRYRAIYEFVSR--------NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV--------  101 (290)
Q Consensus        38 ~~~~~al~~~~~~--------~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~--------  101 (290)
                      ...++|||||.+-        .+.||.|++||||.|+ -+++.+|.+.|+++|+.|+||.|+|.++.-....        
T Consensus      1138 arifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~-GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG 1216 (1335)
T KOG3632|consen 1138 ARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVL-GDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQG 1216 (1335)
T ss_pred             ceeeEeeeccCccccCCCCChhhhccccccCcEEEEe-ccccccceeecccccccccccccccccccCCcHHHHHHHHhc
Confidence            4689999999883        6789999999999998 4567899999999999999999999876554310        


Q ss_pred             --------------------------cceEEEEcccCCCCCC-------CCceecCCCEEEEEee--cCCeEEEEeCCee
Q psy7076         102 --------------------------VPEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRT  146 (290)
Q Consensus       102 --------------------------~~~~~~a~~~y~~~~~-------~eL~~~~G~~v~v~~~--~~~W~~~~~~g~~  146 (290)
                                                .....++.+||++++.       .+|.|..||+|.|...  ++|+++|.++|+.
T Consensus      1217 ~lPsv~~~e~~~gs~~s~g~~k~vp~~p~~mvaa~dydpqeSSpg~dgeAelafraGdIitVfg~mdddgfyyGelngqk 1296 (1335)
T KOG3632|consen 1217 LLPSVPTEEMRKGSAFSDGQQKMVPWPPRQMVAASDYDPQESSPGLDGEAELAFRAGDIITVFGKMDDDGFYYGELNGQK 1296 (1335)
T ss_pred             cCCCCCchhhhcccccCCCCccccCCchhhhhhhhcCCcccCCCCcccceeeccccCCeEEeeccccCCcccccccCCcc
Confidence                                      2335678899998753       5799999999999987  5789999999999


Q ss_pred             EEecCCCeEecCCC
Q psy7076         147 GLFPSNYVVPYEAQ  160 (290)
Q Consensus       147 G~~P~~~v~~~~~~  160 (290)
                      |++|++|++..+..
T Consensus      1297 glvpsnfle~p~~e 1310 (1335)
T KOG3632|consen 1297 GLVPSNFLEAPNAE 1310 (1335)
T ss_pred             CccccccccCCCcc
Confidence            99999999887644

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.40  E-value=2.3e-13  Score=90.48  Aligned_cols=54  Identities=50%  Similarity=1.017  Sum_probs=46.5

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccC
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP   94 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~   94 (290)
                      +|+|+++|.+..+++|+|++||+|.|+ .....++||.|+.+|+.||||.+||++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~-~~~~~~~ww~~~~~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVL-GEKDDDGWWLGENNGRRGWFPSSYVEE   54 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEE-EEECSTSEEEEEETTEEEEEEGGGEEE
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEE-EeecCCCEEEEEECCcEEEEcHHHEEE
Confidence            489999999999999999999999997 123567999999999999999999975

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.35  E-value=1.5e-12  Score=86.52  Aligned_cols=54  Identities=37%  Similarity=0.850  Sum_probs=46.7

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEE-EcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIR-KKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~-~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      +++|++||.++.+++|+|++||+|.|+ ++.+++||.|+..  |   +.||||++||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~~ww~~~~~--g---~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDDDGWWLGENN--G---RRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECSTSEEEEEET--T---EEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecCCCEEEEEEC--C---cEEEEcHHHEEEC
Confidence            478999999999999999999999999 7888899999983  3   4899999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG2996|consensus

Probab=99.30  E-value=2.2e-12  Score=119.15  Aligned_cols=55  Identities=36%  Similarity=0.811  Sum_probs=48.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ...++|-|||-+.+..||||+.||+|.|+.+.  +.|||+|+.+++     .||||++||++
T Consensus       805 ~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~d~GWWkGevngr-----vGwFPstYVee  861 (865)
T KOG2996|consen  805 VGTAVARYDFCARDMRELSLKEGDVVKIYDKVGEDQGWWKGEVNGR-----VGWFPSTYVEE  861 (865)
T ss_pred             eeeeeeccccCCCchhhcccccCCEEEEehhccccCceecceecCc-----ccccccccccc
Confidence            34578889999999999999999999999984  579999999843     89999999987

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.28  E-value=5.9e-12  Score=81.20  Aligned_cols=48  Identities=27%  Similarity=0.731  Sum_probs=43.2

Q ss_pred             EEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecC
Q psy7076         222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA  272 (290)
Q Consensus       222 ~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~  272 (290)
                      +|+|+|.++.++||+|++||.|.|+++.+++||.++...+   +++|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~---~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDDGWWKVRNEST---GKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSSSEEEEEETTT---TEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCCCEEEEEECCC---CcEEEeeC
Confidence            5899999999999999999999999999999999999854   45999996

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2199|consensus

Probab=99.27  E-value=1.3e-12  Score=115.84  Aligned_cols=59  Identities=37%  Similarity=0.706  Sum_probs=53.6

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      ...+++||||||++.+++||+|++||||.|++  +.+.+||.|++.+..|+||.|||...-
T Consensus       213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd--~s~~~WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLD--DSDPNWWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             ccchhhhhhhcccccCCCccceecCcEEEEcc--cCCcchhccccCCcccccchhhhhhhh
Confidence            55688999999999999999999999999974  478899999999999999999997654

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.25  E-value=7.4e-12  Score=80.73  Aligned_cols=46  Identities=46%  Similarity=0.884  Sum_probs=40.4

Q ss_pred             EEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccC
Q psy7076          42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPE   89 (290)
Q Consensus        42 ~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~   89 (290)
                      +|+|+|.++.++||+|++||+|.|++.  .+++||.++.  +++.||||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEK--SDDGWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEE--SSSSEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEe--cCCCEEEEEECCCCcEEEeeC
Confidence            699999999999999999999999754  5669999998  479999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG1118|consensus

Probab=99.21  E-value=1.1e-11  Score=106.56  Aligned_cols=58  Identities=36%  Similarity=0.706  Sum_probs=53.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      .+.|+|+|+|+++.+.||.|++||+|.|.  ..-+.+||.|+..|++|+||.|||+.+.+
T Consensus       306 ~p~cralYdFepenEgEL~fkeGDlI~l~--~QIdenWyeG~~~g~sG~FPvnYv~vlvp  363 (366)
T KOG1118|consen  306 QPCCRALYDFEPENEGELDFKEGDLITLT--NQIDENWYEGEKHGESGMFPVNYVEVLVP  363 (366)
T ss_pred             chhheeeeccCCCCCCccCcccCceeeeh--hhcCcchhhheecCccCccccceeEEecc
Confidence            46799999999999999999999999995  34789999999999999999999997754

>KOG2070|consensus

Probab=99.14  E-value=2.4e-11  Score=110.53  Aligned_cols=60  Identities=30%  Similarity=0.827  Sum_probs=55.1

Q ss_pred             CCCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       216 ~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+..++|-|.|.....|||+|.+||+|.|.+..+.|||+|+++++     +||||.+||.++..
T Consensus        15 ~~pLvvrAkf~F~gsNnDELsf~KgDvItVTq~eeGGWWEGTlng~-----TGWFPsnYV~eik~   74 (661)
T KOG2070|consen   15 NNPLVVRAKFNFQGSNNDELSFSKGDVITVTQVEEGGWWEGTLNGR-----TGWFPSNYVREIKS   74 (661)
T ss_pred             CCceEEEEEeecccCCCceeccccCCEEEEEEeccCcceeccccCc-----cCccchHHHHHHhh
Confidence            4567899999999999999999999999999999999999999843     89999999999874

>KOG3632|consensus

Probab=99.14  E-value=1e-10  Score=113.72  Aligned_cols=150  Identities=21%  Similarity=0.413  Sum_probs=101.7

Q ss_pred             cceEEEEcccCCCC--------CCCCceecCCCEEEEEee-c-CCeEEEEeCCeeEEecCCCeEecCCCCCCCCCC----
Q psy7076         102 VPEYYIAAYPYDST--------EPGDLTFNQDEVIYVTKK-E-NDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVD----  167 (290)
Q Consensus       102 ~~~~~~a~~~y~~~--------~~~eL~~~~G~~v~v~~~-~-~~W~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~----  167 (290)
                      +...++|++||++-        ...||.|++|++|.|+.. | +|++.++.+|+.|++|.|+|.++..........    
T Consensus      1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkDadgFY~GE~ngr~GlIPcNmvae~~vd~eq~~~r~rqG 1216 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKDADGFYMGELNGRRGLIPCNMVAEQPVDNEQTDRRWRQG 1216 (1335)
T ss_pred             cceeeEeeeccCccccCCCCChhhhccccccCcEEEEeccccccceeecccccccccccccccccccCCcHHHHHHHHhc
Confidence            45678999999973        356899999999999976 4 889999999999999999999877554111000    


Q ss_pred             CCCCCCCCCCCCCCCCCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCCCC-------CCceecCCC
Q psy7076         168 PTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATS-------SEQLSLSRG  240 (290)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~-------~~eLs~~~G  240 (290)
                      ..+..+..          .+.+    .+...  +.+.+.       ....+...++.+||+++.       ..+|.|..|
T Consensus      1217 ~lPsv~~~----------e~~~----gs~~s--~g~~k~-------vp~~p~~mvaa~dydpqeSSpg~dgeAelafraG 1273 (1335)
T KOG3632|consen 1217 LLPSVPTE----------EMRK----GSAFS--DGQQKM-------VPWPPRQMVAASDYDPQESSPGLDGEAELAFRAG 1273 (1335)
T ss_pred             cCCCCCch----------hhhc----ccccC--CCCccc-------cCCchhhhhhhhcCCcccCCCCcccceeeccccC
Confidence            00000000          0000    00000  000000       002345678899998876       379999999


Q ss_pred             CEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         241 QLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       241 d~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      |+|.|..+ +++|+++|++++     +.|++|+++++...
T Consensus      1274 dIitVfg~mdddgfyyGelng-----qkglvpsnfle~p~ 1308 (1335)
T KOG3632|consen 1274 DIITVFGKMDDDGFYYGELNG-----QKGLVPSNFLEAPN 1308 (1335)
T ss_pred             CeEEeeccccCCcccccccCC-----ccCccccccccCCC
Confidence            99999997 677999999873     36999999998753

>smart00326 SH3 Src homology 3 domains

Probab=99.13  E-value=9.6e-11  Score=77.95  Aligned_cols=54  Identities=46%  Similarity=0.915  Sum_probs=48.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC-CeeeeccCCcccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP   94 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~-g~~G~~P~~yv~~   94 (290)
                      ..++|+|+|.+..+++|+|++||+|.|+..  ...+||.+++. ++.||||.+|++.
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~--~~~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEK--SDDGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEc--CCCCeEEEEeCCCCEEEEchHHEEE
Confidence            578999999999999999999999999743  47899999985 9999999999874

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.12  E-value=1.5e-10  Score=75.88  Aligned_cols=51  Identities=51%  Similarity=0.956  Sum_probs=46.0

Q ss_pred             EEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCC-eeeeccCCccc
Q psy7076          41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-QTGWFPESYVE   93 (290)
Q Consensus        41 ~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g-~~G~~P~~yv~   93 (290)
                      ++|+|+|.+...++|+|.+||+|.|+..  .+++||.++..+ +.||||.+||+
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~--~~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEK--SDDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEc--CCCCeEEEEECCCCEEEEccccCc
Confidence            6899999999999999999999999743  578999999855 99999999986

>KOG2070|consensus

Probab=99.12  E-value=2.3e-11  Score=110.57  Aligned_cols=57  Identities=47%  Similarity=0.872  Sum_probs=51.3

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      -.++|-|.|.+...|||+|.+||||.|.  +..+.|||.|.++|+.||||.|||..+..
T Consensus        18 LvvrAkf~F~gsNnDELsf~KgDvItVT--q~eeGGWWEGTlng~TGWFPsnYV~eik~   74 (661)
T KOG2070|consen   18 LVVRAKFNFQGSNNDELSFSKGDVITVT--QVEEGGWWEGTLNGRTGWFPSNYVREIKS   74 (661)
T ss_pred             eEEEEEeecccCCCceeccccCCEEEEE--EeccCcceeccccCccCccchHHHHHHhh
Confidence            3689999999999999999999999995  44788999999999999999999986653

>KOG0162|consensus

Probab=99.12  E-value=1.2e-10  Score=110.47  Aligned_cols=56  Identities=38%  Similarity=0.769  Sum_probs=51.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP   94 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~   94 (290)
                      ..+.|.|+|+|.++..+||+|++||+|.|+  ..+.+|||.|+.+|+.||||.+||.+
T Consensus      1050 k~p~~~A~Y~y~gq~~dEls~~~~diIei~--~edpSGWw~gk~~~keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1050 KNPVCEALYDYPGQDVDELSFKKGDIIEIM--REDPSGWWLGKLNGKEGLFPGNYVTE 1105 (1106)
T ss_pred             CCcceeeeccCCCCCcccccccCCCEEEEe--ccCCCcchhhccCCcccccccccccc
Confidence            348899999999999999999999999995  34788999999999999999999975

>smart00326 SH3 Src homology 3 domains

Probab=99.11  E-value=2.8e-10  Score=75.66  Aligned_cols=56  Identities=34%  Similarity=0.761  Sum_probs=50.0

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..++|+|+|.+..+++|+|++||.|.|++...++||.+++..    ++.||||++|++.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~----~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKSDDGWWKGRLGR----GKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEeCC----CCEEEEchHHEEEC
Confidence            458899999999999999999999999999899999999763    34899999999863

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.07  E-value=4.1e-10  Score=73.82  Aligned_cols=52  Identities=37%  Similarity=0.822  Sum_probs=47.3

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceE
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK  276 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~  276 (290)
                      ++|+|+|.++.+++|+|++||.|.|++...+|||.++....    +.||||++||+
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~~w~~~~~~~~----~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKSDDGWWEGRLLGG----KRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcCCCCeEEEEECCC----CEEEEccccCc
Confidence            68999999999999999999999999998899999998642    48999999986

>KOG2199|consensus

Probab=99.06  E-value=4.1e-11  Score=106.46  Aligned_cols=58  Identities=24%  Similarity=0.551  Sum_probs=52.0

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ..+.++|||||++..++||+|++||+|.|++..+..||+|++..     ..|+||.+||...-
T Consensus       214 ~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~WWKG~~~~-----~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  214 VVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPNWWKGENHR-----GIGLFPSNFVTADL  271 (462)
T ss_pred             cchhhhhhhcccccCCCccceecCcEEEEcccCCcchhccccCC-----cccccchhhhhhhh
Confidence            35568999999999999999999999999999999999999762     37999999998754

>KOG0162|consensus

Probab=99.05  E-value=7e-10  Score=105.29  Aligned_cols=54  Identities=31%  Similarity=0.764  Sum_probs=49.9

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..|.|+|||.+++.+||+|++||+|.|+.+...|||.|+..+     ++||||.+||.+
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSGWw~gk~~~-----keG~~P~~Yv~~ 1105 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSGWWLGKLNG-----KEGLFPGNYVTE 1105 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCcchhhccCC-----cccccccccccc
Confidence            569999999999999999999999999999999999999763     389999999976

>KOG2856|consensus

Probab=99.00  E-value=2.1e-10  Score=100.91  Aligned_cols=57  Identities=40%  Similarity=0.830  Sum_probs=50.9

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC-CeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~-g~~G~~P~~yv~~~   95 (290)
                      ..+++|||||.++..|||+|++||+|..++ ..+.-||+.|+++ |+.|++|+|||+.+
T Consensus       414 ~v~vraLYDY~gqE~DElsfkaGd~l~kl~-eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  414 FVRVRALYDYAGQEGDELSFKAGDELEKLE-EEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeeEEeeeccCcccccchhhccccHhhhcC-CccccccccccccCCcccccchhhhhcc
Confidence            368999999999999999999999999984 3467799999995 99999999999854

>KOG1118|consensus

Probab=98.98  E-value=6e-10  Score=96.05  Aligned_cols=58  Identities=26%  Similarity=0.579  Sum_probs=52.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...|+++|||+++...||.|+.||+|.|++..+.+||.|+..+     ..|+||.+||+++..
T Consensus       306 ~p~cralYdFepenEgEL~fkeGDlI~l~~QIdenWyeG~~~g-----~sG~FPvnYv~vlvp  363 (366)
T KOG1118|consen  306 QPCCRALYDFEPENEGELDFKEGDLITLTNQIDENWYEGEKHG-----ESGMFPVNYVEVLVP  363 (366)
T ss_pred             chhheeeeccCCCCCCccCcccCceeeehhhcCcchhhheecC-----ccCccccceeEEecc
Confidence            3459999999999999999999999999999999999999873     389999999998753

>KOG3601|consensus

Probab=98.89  E-value=7.4e-10  Score=90.97  Aligned_cols=119  Identities=24%  Similarity=0.365  Sum_probs=99.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCC------------C-----
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG------------E-----  100 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~------------~-----  100 (290)
                      ..-+-+++.+...+...+..+.|+.|..+.  ....||+.+..+...|.++.++|++.....            .     
T Consensus        58 ~~wve~~i~r~~ae~~l~~~~~G~fl~r~s--~sSPg~fsgsvr~~d~vqhfkvvrpa~~k~~lw~skfnslnplv~Y~r  135 (222)
T KOG3601|consen   58 HEWVEGLIPRPLAEDLLSKKRDGDFLIRLS--ESSPGDFSGSVRFPDGVQHFKVVRPAFGKYFLWSSKFNSLNPLVSYHR  135 (222)
T ss_pred             ccceecccccchhhhhhhccCcchhhhhhh--hcCcccccccccCCCCceeccccccCccccccchhhccCCCCCcccCc
Confidence            345788899999888888999999998854  378899999999999999999986432210            0     


Q ss_pred             -------------------------ccceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCe
Q psy7076         101 -------------------------VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV  154 (290)
Q Consensus       101 -------------------------~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v  154 (290)
                                               ....+..++|+|.++.+.+|.|++|+.+.|+.. +..||.|+..|+.|+||++|+
T Consensus       136 t~s~~r~~qi~l~d~~~~~~~~~~~~~~~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~ww~Gs~lg~agiFpagyv  215 (222)
T KOG3601|consen  136 TASQSRNQQIFLRDMEPPPAPLPPAPTNYYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPFWWFGSKLGRAGIFPAGYV  215 (222)
T ss_pred             ccccccceeeeecccccccccCCCCccchhhhhcCCCCCCCchhhccccCCcceeecCCCcchhhccccCceeeecCccc
Confidence                                     023567789999999999999999999999988 678999999999999999998


Q ss_pred             EecC
Q psy7076         155 VPYE  158 (290)
Q Consensus       155 ~~~~  158 (290)
                      ...+
T Consensus       216 ~p~d  219 (222)
T KOG3601|consen  216 APSD  219 (222)
T ss_pred             cccc
Confidence            7654

>KOG2546|consensus

Probab=98.72  E-value=3.9e-09  Score=94.75  Aligned_cols=67  Identities=39%  Similarity=0.872  Sum_probs=59.7

Q ss_pred             CeeeeccCCcccCCccCCCccceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCC
Q psy7076          82 GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA  159 (290)
Q Consensus        82 g~~G~~P~~yv~~~~~~~~~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~  159 (290)
                      +.-||+|.+|+|.           ++++|||.+..++||+|.+|-+|.|+++ ++|||+|-.+|.+|+||.|||+++..
T Consensus       413 ~sp~w~p~syLEk-----------Vv~iydy~~~KddeLsf~E~ailyv~kknddgw~EgV~~~VTglFpgnyve~~~~  480 (483)
T KOG2546|consen  413 SSPAWVPTSYLEK-----------VVAIYDYTADKDDELSFAEGAILYVLKKNDDGWYEGVQDGVTGLFPGNYVEPLKA  480 (483)
T ss_pred             CCcccccHHHHHH-----------HHhhcccccccccccccccccEEEEEEecCCcchhheecCcceeccCcccccccc
Confidence            4468899998864           4679999999999999999999999999 68999999999999999999998753

>KOG1702|consensus

Probab=98.62  E-value=2.5e-08  Score=81.33  Aligned_cols=58  Identities=36%  Similarity=0.741  Sum_probs=50.6

Q ss_pred             CCCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccC
Q psy7076          35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP   94 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~   94 (290)
                      ..+-.+|+|+|||.++..+|++|.-||.|.-  .+..++||.+|..  +|..|++|+|||+.
T Consensus       204 ~~~gktyra~ydysaqdedevsF~dgd~ivn--vq~iddGWmygtv~rtg~tGmlpaNyie~  263 (264)
T KOG1702|consen  204 SCTGKTYRAFYDYSAQDEDEVSFVDGDYIVN--VQSIDDGWMYGTVVRTGWTGMLPANYIEF  263 (264)
T ss_pred             CCCCccchhhccCcccCcceeEEecCCeEEE--EEeccCCceeeEEEeccccCCCchhheee
Confidence            3334789999999999999999999999876  4567889999986  99999999999985

>KOG3655|consensus

Probab=98.60  E-value=7.7e-08  Score=87.90  Aligned_cols=58  Identities=31%  Similarity=0.692  Sum_probs=53.0

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+..++|+|||++-+..|++|..+|.|.+++..+.|||.|..    ..|..|+||+|||+++
T Consensus       426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vdegww~g~~----pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDEGWWTGQG----PDGEVGLFPANYVELI  483 (484)
T ss_pred             cCCCccccccccccCCcccccCCccccccccccCCccccccC----CCCCcCcccccccccC
Confidence            567799999999999999999999999999999999999984    4567899999999875

>KOG0515|consensus

Probab=98.57  E-value=2.3e-08  Score=92.17  Aligned_cols=59  Identities=27%  Similarity=0.541  Sum_probs=52.0

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccc-cCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVK-QNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~-~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ..+-|||||+++..|||+|++||.++|+.+ +..+..||.++++|+.|+||.||+-+.+.
T Consensus       684 G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr  743 (752)
T KOG0515|consen  684 GVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR  743 (752)
T ss_pred             ceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence            468899999999999999999999999866 34456899999999999999999987754

>KOG2546|consensus

Probab=98.56  E-value=5.6e-08  Score=87.47  Aligned_cols=57  Identities=42%  Similarity=0.789  Sum_probs=52.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      +.+++++|||.+...+||+|.+|-+|.|+.+  +++|||+|-.+|-.|+||.|||+++.
T Consensus       423 LEkVv~iydy~~~KddeLsf~E~ailyv~kk--nddgw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  423 LEKVVAIYDYTADKDDELSFAEGAILYVLKK--NDDGWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHHHhhcccccccccccccccccEEEEEEe--cCCcchhheecCcceeccCccccccc
Confidence            4678999999999999999999999999754  78999999999999999999999764

>KOG1264|consensus

Probab=98.56  E-value=2.5e-08  Score=95.97  Aligned_cols=58  Identities=31%  Similarity=0.704  Sum_probs=52.9

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..++|||||.++.++||+|.+|-+|.++++...|||.|.+.++    ..+|||++||++|..
T Consensus       775 vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~----iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  775 VTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGR----IQQWFPSNYVEEIST  832 (1267)
T ss_pred             hhhhhhhccccCCcccccccccceeEeeeccCCceeecccccc----eeeeccHHHhhhhcc
Confidence            4589999999999999999999999999999999999998743    479999999999876

>KOG1843|consensus

Probab=98.49  E-value=1.3e-07  Score=84.85  Aligned_cols=55  Identities=36%  Similarity=0.657  Sum_probs=51.6

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccC
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP   94 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~   94 (290)
                      .++++|+|.++.+++|+|++||||.|+++.+....||.|+.+++.|+||+|||++
T Consensus       418 ~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  418 IATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             eeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccccccccccceecc
Confidence            7999999999999999999999999987777777899999999999999999975

>KOG2856|consensus

Probab=98.43  E-value=2.1e-07  Score=82.30  Aligned_cols=54  Identities=30%  Similarity=0.573  Sum_probs=49.1

Q ss_pred             eEEEEcccCCCCCCCCceecCCCEEEEEee--cCCeEEEEeC-CeeEEecCCCeEec
Q psy7076         104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIG-DRTGLFPSNYVVPY  157 (290)
Q Consensus       104 ~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~--~~~W~~~~~~-g~~G~~P~~~v~~~  157 (290)
                      ..++|+|||.+++.+||+|+.||.+..+..  ..||+.|+++ |+.|++|++||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeDeqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEEDEQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCccccccccccccCCcccccchhhhhcc
Confidence            568899999999999999999999998876  3699999995 99999999999865

>KOG1702|consensus

Probab=98.39  E-value=3.6e-07  Score=74.70  Aligned_cols=58  Identities=22%  Similarity=0.483  Sum_probs=52.2

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      .+..++|+|||.+++.+|++|.-||.|.-....++||.+|++..+|.   .|..|+||++-
T Consensus       206 ~gktyra~ydysaqdedevsF~dgd~ivnvq~iddGWmygtv~rtg~---tGmlpaNyie~  263 (264)
T KOG1702|consen  206 TGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDGWMYGTVVRTGW---TGMLPANYIEF  263 (264)
T ss_pred             CCccchhhccCcccCcceeEEecCCeEEEEEeccCCceeeEEEeccc---cCCCchhheee
Confidence            35678999999999999999999999998999999999999987654   79999999975

>KOG1264|consensus

Probab=98.33  E-value=2.5e-07  Score=89.31  Aligned_cols=70  Identities=30%  Similarity=0.557  Sum_probs=56.4

Q ss_pred             cCCcccCCccCCCccceEEEEcccCCCCCCCCceecCCCEEEEEeec-CCeEEEEeCC-eeEEecCCCeEecCCC
Q psy7076          88 PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGD-RTGLFPSNYVVPYEAQ  160 (290)
Q Consensus        88 P~~yv~~~~~~~~~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~~-~~W~~~~~~g-~~G~~P~~~v~~~~~~  160 (290)
                      |..|++.-+..   +...++|+|+|.++.++||+|.++.+|.+++++ .|||.|..+| .++|||++||+++...
T Consensus       762 pg~yme~n~~~---~~vt~kAL~~Yka~r~DELSFpk~aiItnv~keeg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  762 PGDYMEINPSM---PQVTVKALYDYKAKRSDELSFPKGAIITNVSKEEGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             CCCccccCccc---cchhhhhhhccccCCcccccccccceeEeeeccCCceeecccccceeeeccHHHhhhhccc
Confidence            44555443322   345789999999999999999999999999985 6699999975 5899999999998753

>KOG3655|consensus

Probab=98.32  E-value=2.4e-07  Score=84.72  Aligned_cols=55  Identities=35%  Similarity=0.730  Sum_probs=50.1

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+|.+-...||+|..+|+|.++.  ..+.|||.|.. +|+.|+||+|||+++
T Consensus       428 q~A~A~~dyqAAddtEisf~p~d~it~Id--~vdegww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  428 QTARALYDYQAADDTEISFDPPDAITLID--QVDEGWWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCccccccccccCCcccccCCcccccccc--ccCCccccccCCCCCcCcccccccccC
Confidence            45899999999999999999999999864  47899999998 999999999999875

>KOG3875|consensus

Probab=98.24  E-value=2.1e-07  Score=80.72  Aligned_cols=61  Identities=36%  Similarity=0.652  Sum_probs=48.3

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccC---CC-CCeEEEee-CCeeeeccCCcccCCccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN---AE-PGWLAGEL-RGQTGWFPESYVEPCDETG   99 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~---~~-~~W~~g~~-~g~~G~~P~~yv~~~~~~~   99 (290)
                      ..++|+|||.+..+.||+|++||++.|+.+.+   .. +||..... ++..||||.|||+.+...+
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~rq~  334 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGRQP  334 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhcCC
Confidence            57899999999999999999999999974421   12 24444555 7889999999999887643

>KOG0515|consensus

Probab=98.21  E-value=4.4e-07  Score=83.94  Aligned_cols=58  Identities=21%  Similarity=0.563  Sum_probs=51.1

Q ss_pred             cceEEEEcccCCCCCCCCceecCCCEEEEEee-c---CCeEEEEeCCeeEEecCCCeEecCC
Q psy7076         102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E---NDWWTGTIGDRTGLFPSNYVVPYEA  159 (290)
Q Consensus       102 ~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~---~~W~~~~~~g~~G~~P~~~v~~~~~  159 (290)
                      ....+-|+|||+++..+||+|..||.+.|+++ +   .+||.++++|+.|+||.+|+-.+..
T Consensus       682 N~G~vYAlwdYeaqf~DELsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPr  743 (752)
T KOG0515|consen  682 NKGVVYALWDYEAQFEDELSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPR  743 (752)
T ss_pred             ccceeEEeecccccccccccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCcc
Confidence            34567899999999999999999999999987 2   4699999999999999999977653

>KOG3875|consensus

Probab=98.17  E-value=3.2e-07  Score=79.56  Aligned_cols=59  Identities=31%  Similarity=0.541  Sum_probs=49.0

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEc-----CCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKK-----TTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-----~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ++|+|+|||.+..+.||+|++||.+.|..+     .+..||.....+ |.  ..||||.|||+.+..
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~d-g~--~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRD-GG--TTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeecc-CC--eeeeeehhhhhhhhc
Confidence            679999999999999999999999998887     344577766553 22  389999999999876

>KOG1451|consensus

Probab=98.17  E-value=4e-06  Score=78.55  Aligned_cols=89  Identities=33%  Similarity=0.490  Sum_probs=70.3

Q ss_pred             ccccccccCCCCCCCCCCCCCCCCCCCCCCCCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeee
Q psy7076           6 RAVANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG   85 (290)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G   85 (290)
                      +.+-++++.+++.+.+..+..-.+-....+....++.++|...+....+|+|..|.++.-. .....+||..|+++|+.|
T Consensus       724 ~~~~fSf~~~~~~~~l~~t~ps~~~~~~~~~~~rk~k~lyAc~a~h~selsf~~gt~f~nv-~~S~e~Gwl~GtLnGktg  802 (812)
T KOG1451|consen  724 GVVEFSFTSLTRQNYLRGTLPSSSMGTTYKYLSRRVKTLYACTADHHSELSFEPGTIFTNV-YESNEDGWLVGTLNGKTG  802 (812)
T ss_pred             CcccccCCcccccccCCCCCCcccccCCCccccccccceeccCCCCcccccccCcceeeee-cccCCCCceeeecCCCcc
Confidence            3355778888888887774444444444444557899999999999999999999999853 334688999999999999


Q ss_pred             eccCCcccCC
Q psy7076          86 WFPESYVEPC   95 (290)
Q Consensus        86 ~~P~~yv~~~   95 (290)
                      ++|.|||+++
T Consensus       803 lip~nyve~l  812 (812)
T KOG1451|consen  803 LIPSNYVEPL  812 (812)
T ss_pred             cCcccccCcC
Confidence            9999999864

>KOG3523|consensus

Probab=98.14  E-value=2.9e-07  Score=86.40  Aligned_cols=60  Identities=33%  Similarity=0.715  Sum_probs=53.7

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      .-++++.++..|.+.++|+|++..+|+|.|+  ++..+||++|+.  +|..||||..|++.+..
T Consensus       606 ~dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~--~k~~DGWl~GeRl~Dge~GWFP~~~veeI~~  667 (695)
T KOG3523|consen  606 WDCPQVQCVHSYKAKQPDELTLELADVVNVL--QKTPDGWLEGERLRDGERGWFPSSYVEEITN  667 (695)
T ss_pred             cCCChhheeeccccCCCceeeeehhhhhhhh--hcCCCccccccccccCccCcchHHHHHHhcC
Confidence            3468899999999999999999999999995  457899999996  99999999999998754

>KOG4278|consensus

Probab=98.08  E-value=2.8e-06  Score=80.82  Aligned_cols=58  Identities=28%  Similarity=0.639  Sum_probs=50.3

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      -.++|||||.+..+..|++.+||.+.|+... .+..|...+. +|+ ||||+||+.+++..
T Consensus        91 NLFVALYDFvasGdntLSitKGeklRvLGYN-~NgEWcEartKNGq-GWVPSNyItPvNSL  149 (1157)
T KOG4278|consen   91 NLFVALYDFVASGDNTLSITKGEKLRVLGYN-KNGEWCEARTKNGQ-GWVPSNYITPVNSL  149 (1157)
T ss_pred             ceeEeeeeeeccccceeeeecCceEEEeeec-CCCcceeecccCCC-ccccccccccccch
Confidence            3699999999999999999999999999653 4566999987 565 99999999988764

>KOG3523|consensus

Probab=98.00  E-value=4.6e-07  Score=85.07  Aligned_cols=62  Identities=31%  Similarity=0.642  Sum_probs=54.5

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCccc
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISI  285 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~~  285 (290)
                      +.+...|.+..+|||+|+.+|++.|+.+..+||.+|+...+|   ..||||.+||+.|.+.....
T Consensus       611 v~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DGWl~GeRl~Dg---e~GWFP~~~veeI~~~~~r~  672 (695)
T KOG3523|consen  611 VQCVHSYKAKQPDELTLELADVVNVLQKTPDGWLEGERLRDG---ERGWFPSSYVEEITNPHTRA  672 (695)
T ss_pred             hheeeccccCCCceeeeehhhhhhhhhcCCCccccccccccC---ccCcchHHHHHHhcCHHHHH
Confidence            678889999999999999999999999999999999987664   57999999999987654333

>KOG1843|consensus

Probab=97.97  E-value=3.3e-06  Score=75.93  Aligned_cols=56  Identities=38%  Similarity=0.760  Sum_probs=49.1

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      .+.++.++|+|..+.+.+|+|++||+|.++++.  .+.||.|+...     ++|+||++||++
T Consensus       415 ~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s~~dwwtgr~~~-----~egifPanyv~~  472 (473)
T KOG1843|consen  415 EPNIATALYSFAGEQPGDLSFQKGDIITILKKSDSANDWWTGRGNG-----YEGIFPANYVSL  472 (473)
T ss_pred             CcceeeeeehhccCCCCCcccccCceEEEecCCcchhhHHHhhccc-----cccccccceecc
Confidence            355799999999999999999999999999984  55899999763     489999999975

>KOG3725|consensus

Probab=97.94  E-value=2.2e-06  Score=72.61  Aligned_cols=59  Identities=29%  Similarity=0.500  Sum_probs=54.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      |..+++|||||++..+.||++...|+|.|......+.+|..|+.+++.|-+|..|++.+
T Consensus       316 gtrkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  316 GTRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             cccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            46789999999999999999999999999766667889999999999999999999875

>KOG2222|consensus

Probab=97.89  E-value=1.7e-06  Score=79.35  Aligned_cols=60  Identities=37%  Similarity=0.687  Sum_probs=52.7

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      +..+++||.||....++||-|+++|+|+|+.  ..+.--|.|+++|-+||||+.||+.+++.
T Consensus       547 ~~krakal~df~r~dddelgfrkndiitiis--ekdehcwvgelnglrgwfpakfvellder  606 (848)
T KOG2222|consen  547 GAKRAKALHDFAREDDDELGFRKNDIITIIS--EKDEHCWVGELNGLRGWFPAKFVELLDER  606 (848)
T ss_pred             hhHHHHHHhhhhhccccccccccccEEEEee--cCCcceeeeccccccccchHHHHHHHHhc
Confidence            4568999999999999999999999999963  34566789999999999999999988764

>KOG2528|consensus

Probab=97.61  E-value=2.1e-05  Score=71.66  Aligned_cols=57  Identities=39%  Similarity=0.744  Sum_probs=51.7

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      +.|++|||..+...||++..||++.+. ..+..+|||.|.+ .|.+|+||..||+.+..
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~-~e~~~~GwLeg~Nsrge~GlfPa~yVeV~~~   61 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSIT-SEDVIEGWLEGSNSRGERGLFPASYVEVTRL   61 (490)
T ss_pred             chhhhcchhhcccccccccccceeeec-CcccccccccCCCccCccCCCcccceeeecc
Confidence            579999999999999999999999997 4567889999998 99999999999998763

>KOG4773|consensus

Probab=97.61  E-value=8.5e-06  Score=71.96  Aligned_cols=58  Identities=33%  Similarity=0.661  Sum_probs=52.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ..++.++++|.++...||.|.+||++.++.  ..+.+||+|+..|..||+|..|++.++.
T Consensus       175 ~q~~~a~~df~gns~~EL~l~agdV~~~~~--r~ek~W~~gk~R~~~g~yp~sF~~~ld~  232 (386)
T KOG4773|consen  175 AQRAEASFDFPGNSKLELNLVAGDVEFLLS--RDEKYWLLGKVRGLTGYYPDSFVKQLDD  232 (386)
T ss_pred             hHHHHhhccCCCCccceeeeehhhHHHHHh--hcccceeeeeeccccccccHHhhhhhcc
Confidence            467899999999999999999999999864  4788999999999999999999998754

>KOG3557|consensus

Probab=97.61  E-value=3e-05  Score=73.58  Aligned_cols=58  Identities=24%  Similarity=0.510  Sum_probs=51.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++++|||.+....||++.+||+++|+.   +..+||.++. .|+.|+||.|.+..+...
T Consensus       500 ~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~---d~R~WW~~kn~~G~~GyvP~nIL~~~~~~  558 (721)
T KOG3557|consen  500 KKWVLVLYDFQARNSSELSVKKGEVLEVLD---DGRKWWKVKNGHGRAGYVPSNILAPLQPE  558 (721)
T ss_pred             ceeeeeehhhhcccchhhhhhhhhhhhhhh---ccccceeccCccCCCCCcchhhhccCCCc
Confidence            446899999999999999999999999963   5778999987 999999999999988764

>KOG4278|consensus

Probab=97.52  E-value=8e-05  Score=71.22  Aligned_cols=58  Identities=22%  Similarity=0.537  Sum_probs=49.8

Q ss_pred             ceEEEEcccCCCCCCCCceecCCCEEEEEee--cCCeEEEEeCCeeEEecCCCeEecCCC
Q psy7076         103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYEAQ  160 (290)
Q Consensus       103 ~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~--~~~W~~~~~~g~~G~~P~~~v~~~~~~  160 (290)
                      ...++|+|||.+..++.|++.+|+.+.|+.-  ++.|++++....+||||+||+.+++.-
T Consensus        90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~NgEWcEartKNGqGWVPSNyItPvNSL  149 (1157)
T KOG4278|consen   90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNKNGEWCEARTKNGQGWVPSNYITPVNSL  149 (1157)
T ss_pred             CceeEeeeeeeccccceeeeecCceEEEeeecCCCcceeecccCCCccccccccccccch
Confidence            4578999999999999999999999999987  567999988333499999999987754

>KOG3775|consensus

Probab=97.32  E-value=0.00013  Score=65.19  Aligned_cols=58  Identities=34%  Similarity=0.670  Sum_probs=50.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~   98 (290)
                      ..-+|++.|.+.+++||.+..||-|.|  ....++-|++|.+  +|++|+||+.|+-.++..
T Consensus       263 ~THR~~~rFvPRHpDELeLEIgDav~V--e~eadD~W~~G~NlRTG~~GIFPA~ya~evd~~  322 (482)
T KOG3775|consen  263 QTHRAVFRFVPRHPDELELEIGDAVLV--EAEADDFWFEGFNLRTGERGIFPAFYAHEVDGP  322 (482)
T ss_pred             hhhhhhhhccCCCcceeeeecCCeeEe--eecccchhhccccccccccccccceeEEecCCc
Confidence            457999999999999999999999999  4457888999986  999999999998777543

>KOG2528|consensus

Probab=97.28  E-value=0.00011  Score=67.20  Aligned_cols=57  Identities=30%  Similarity=0.552  Sum_probs=49.5

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      .++++|||..+...||++..||.+.++.. ...|||.|..    .+|..|+||+.||+++..
T Consensus         4 k~RamyDf~~E~~sElsi~~~evl~i~~e~~~~GwLeg~N----srge~GlfPa~yVeV~~~   61 (490)
T KOG2528|consen    4 KARAMYDFQSEGHSELSIWEGEVLSITSEDVIEGWLEGSN----SRGERGLFPASYVEVTRL   61 (490)
T ss_pred             chhhhcchhhcccccccccccceeeecCcccccccccCCC----ccCccCCCcccceeeecc
Confidence            37899999999999999999999998886 6779999984    346689999999999763

>KOG3775|consensus

Probab=97.25  E-value=0.00018  Score=64.23  Aligned_cols=60  Identities=22%  Similarity=0.443  Sum_probs=53.2

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      -++++.|.++.++||-|..||-|.|-...++-|++|....+|   +.|+||+.|+..+.....
T Consensus       265 HR~~~rFvPRHpDELeLEIgDav~Ve~eadD~W~~G~NlRTG---~~GIFPA~ya~evd~~ee  324 (482)
T KOG3775|consen  265 HRAVFRFVPRHPDELELEIGDAVLVEAEADDFWFEGFNLRTG---ERGIFPAFYAHEVDGPEE  324 (482)
T ss_pred             hhhhhhccCCCcceeeeecCCeeEeeecccchhhcccccccc---ccccccceeEEecCCchh
Confidence            578999999999999999999999999999999999988665   579999999999876543

>KOG3771|consensus

Probab=97.21  E-value=0.00031  Score=64.83  Aligned_cols=56  Identities=23%  Similarity=0.285  Sum_probs=46.1

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCccc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE   93 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~   93 (290)
                      ...+++++|+|.++..++|+|+.||+|.|+. .+..+.||.|.+.|..+-+|.+|+.
T Consensus       399 ~~~~v~a~~dy~a~~~deLsf~~gd~i~vi~-s~~~~e~~eg~~mg~ke~~~~~~~~  454 (460)
T KOG3771|consen  399 FLYKVKALHDYAAQDTDELSFEAGDVILVIP-SDNPEEQDEGWLMGVKESDWNGLFP  454 (460)
T ss_pred             CccceeccccccccccccccccCCCEEEEec-CCCccchhhHHHhhhccccccccee
Confidence            4678999999999999999999999999986 4556678888887776666666654

>KOG4575|consensus

Probab=97.20  E-value=0.00034  Score=66.42  Aligned_cols=56  Identities=29%  Similarity=0.446  Sum_probs=45.4

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|+|.+.++.+++|.|..||+|+++.   -.+|||++.+   ....|+||.|||..++.
T Consensus         9 ~~vrA~y~w~ge~eGdl~f~egDlie~tr---I~dgkwwi~lhrNk~~~g~fpsNFvhcLd~   67 (874)
T KOG4575|consen    9 CMVRALYAWPGEREGDLKFTEGDLIEQTR---IEDGKWWILLHRNKDEDGLFPSNFVHCLDK   67 (874)
T ss_pred             ceEEeeccCCCCcccccceecccceeEEe---eccceeeeeeeecccccccCcccceeeccc
Confidence            57899999999999999999999999863   3555655543   67889999999965543

>KOG2222|consensus

Probab=97.14  E-value=7.2e-05  Score=68.86  Aligned_cols=58  Identities=26%  Similarity=0.609  Sum_probs=51.7

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..++|+.||.....+||-|++.|+|.|+...+..-|.|++++     ..||||+.||+.+...
T Consensus       549 krakal~df~r~dddelgfrkndiitiisekdehcwvgelng-----lrgwfpakfvellder  606 (848)
T KOG2222|consen  549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEHCWVGELNG-----LRGWFPAKFVELLDER  606 (848)
T ss_pred             HHHHHHhhhhhccccccccccccEEEEeecCCcceeeecccc-----ccccchHHHHHHHHhc
Confidence            457899999999999999999999999999999999999983     3799999999987543

>KOG4429|consensus

Probab=97.04  E-value=0.00022  Score=61.78  Aligned_cols=55  Identities=29%  Similarity=0.340  Sum_probs=49.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ..|.++|.|++...+||....||++.+.+  ....|||+|++.|..|-||+.||+..
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~E--kkeeg~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDE--KKEEGPTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecC--cccCCCceeeeccccCCCcHHHHHHh
Confidence            45899999999999999999999999854  46889999999999999999999865

>KOG3557|consensus

Probab=97.00  E-value=0.00019  Score=68.27  Aligned_cols=62  Identities=21%  Similarity=0.529  Sum_probs=55.0

Q ss_pred             cceEEEEcccCCCCCCCCceecCCCEEEEEeecCCeEEEEe-CCeeEEecCCCeEecCCCCCC
Q psy7076         102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEAQTPA  163 (290)
Q Consensus       102 ~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~~~~W~~~~~-~g~~G~~P~~~v~~~~~~~~~  163 (290)
                      ...++.++|||.++...||++.+||++.|+.....||.+++ .|+.|++|.+.+..+......
T Consensus       499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~~  561 (721)
T KOG3557|consen  499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDDGRKWWKVKNGHGRAGYVPSNILAPLQPEHTG  561 (721)
T ss_pred             cceeeeeehhhhcccchhhhhhhhhhhhhhhccccceeccCccCCCCCcchhhhccCCCcccc
Confidence            44588999999999999999999999999998889999999 799999999999888755443

>KOG4773|consensus

Probab=96.86  E-value=0.00015  Score=64.27  Aligned_cols=180  Identities=22%  Similarity=0.343  Sum_probs=106.2

Q ss_pred             CCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCc------------------cceEEEEcccCCC
Q psy7076          53 DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV------------------VPEYYIAAYPYDS  114 (290)
Q Consensus        53 ~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~------------------~~~~~~a~~~y~~  114 (290)
                      .+++|.. +.|.|+++     .|+.+.    .|+||..|.+...-....                  +.-.+++.+||..
T Consensus        31 ke~~f~~-hFvyViev-----kw~~~s----e~vVyrry~E~~~~tkklee~f~~ss~k~t~l~~n~p~LpA~v~fdfkq  100 (386)
T KOG4773|consen   31 KERSFTS-HFVYVIEV-----KWYGGS----EGVVYRRYFEFHALTKKLEERFGPSSGKSTALACNLPTLPAIVYFDFKQ  100 (386)
T ss_pred             Hhcccch-heEEEEEe-----hhhccc----cceeeeehhhhhhhcchHhhcCCCcccccCchhccCCCCcceeEechhh
Confidence            7888998 88888643     366555    899999998865432210                  2234555666665


Q ss_pred             CCCCCceecCCCEEEEEeecCCeEEEEe---CCeeEEecCCCeEecCCCC-CCCCCCCCCCCCCCCCCCCCCCCCcccCc
Q psy7076         115 TEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYVVPYEAQT-PAAAVDPTPATPVVKDTPTKSEGVTRTSS  190 (290)
Q Consensus       115 ~~~~eL~~~~G~~v~v~~~~~~W~~~~~---~g~~G~~P~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (290)
                      +..+++.-....       -..|....-   -|..|++|..|+++.+... +..-....+.+.     --+...+    +
T Consensus       101 e~Ae~r~~~ln~-------y~e~LlslPi~~l~~p~l~~fffvsp~D~~dVpeai~r~~Prt~-----~~ks~~~----s  164 (386)
T KOG4773|consen  101 EIAEERIPALNA-------YCEWLLSLPIGRLGGPGLRPFFFVSPYDSEDVPEAIRRLRPRTR-----KWKSDGV----S  164 (386)
T ss_pred             hhhhhhhHHHHH-------HHHHHHhcchhhcCCCCceeeeeeccchHhhhhHHHHhcCchhh-----hcccccc----C
Confidence            555443221100       123433322   3456899999998877311 000000000000     0000000    0


Q ss_pred             cCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEe
Q psy7076         191 VSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF  270 (290)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~f  270 (290)
                      +                 .+..+.+.....+.+++||......||.|.+||++.++.+.+.+||.|+..+     .+|||
T Consensus       165 k-----------------asni~~~~~~q~~~a~~df~gns~~EL~l~agdV~~~~~r~ek~W~~gk~R~-----~~g~y  222 (386)
T KOG4773|consen  165 K-----------------ASNIVLGMAAQRAEASFDFPGNSKLELNLVAGDVEFLLSRDEKYWLLGKVRG-----LTGYY  222 (386)
T ss_pred             c-----------------cccccchhhhHHHHhhccCCCCccceeeeehhhHHHHHhhcccceeeeeecc-----ccccc
Confidence            0                 0000001112236789999999999999999999999999999999999763     38999


Q ss_pred             cCCceEEecC
Q psy7076         271 PASYVKVMGG  280 (290)
Q Consensus       271 P~~~v~~~~~  280 (290)
                      |.+|+..+..
T Consensus       223 p~sF~~~ld~  232 (386)
T KOG4773|consen  223 PDSFVKQLDD  232 (386)
T ss_pred             cHHhhhhhcc
Confidence            9999998854

>KOG0197|consensus

Probab=96.83  E-value=0.00064  Score=63.59  Aligned_cols=56  Identities=29%  Similarity=0.615  Sum_probs=47.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCE-EEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDI-IMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~-v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      ...++|+|+|.+....+|+|.+||+ ..+++  ..+..||+.+.  .+..|++|.|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~--~~~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLE--TTNGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeec--cCChhHHHHHHhhcCCCCcCcCceeecc
Confidence            4579999999999999999999999 55543  35677888765  799999999999865

>KOG0197|consensus

Probab=96.74  E-value=0.00048  Score=64.44  Aligned_cols=58  Identities=26%  Similarity=0.581  Sum_probs=50.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCE-EEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQL-IMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~-i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++++|+|.+..+.+|+|.+||. ..+++..+..||+++....   +.+|++|+|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~~~~Ww~ar~~~~---~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETTNGDWWRARSLQL---GQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccCChhHHHHHHhhc---CCCCcCcCceeecc
Confidence            4579999999999999999999999 7788888899999887643   45899999999974

>KOG3725|consensus

Probab=96.67  E-value=0.00049  Score=58.61  Aligned_cols=55  Identities=27%  Similarity=0.506  Sum_probs=49.8

Q ss_pred             ceEEEEcccCCCCCCCCceecCCCEEEEEee---cCCeEEEEeCCeeEEecCCCeEec
Q psy7076         103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPY  157 (290)
Q Consensus       103 ~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~---~~~W~~~~~~g~~G~~P~~~v~~~  157 (290)
                      ...++++|||++....||++...++|.|...   +.+|..+..+++.|-+|..|++.+
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGMD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGMDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCCChHHhhhhhcCCCCCcchhHHHhc
Confidence            4578999999999999999999999999875   788999999999999999998764

>KOG3771|consensus

Probab=96.65  E-value=0.0052  Score=56.92  Aligned_cols=54  Identities=19%  Similarity=0.156  Sum_probs=42.3

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..+.++|||.++..++|+|+.||.|.|+.. +.+.||.|++.+.     .+-++.+|+..
T Consensus       401 ~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~~~e~~eg~~mg~-----ke~~~~~~~~~  455 (460)
T KOG3771|consen  401 YKVKALHDYAAQDTDELSFEAGDVILVIPSDNPEEQDEGWLMGV-----KESDWNGLFPL  455 (460)
T ss_pred             cceeccccccccccccccccCCCEEEEecCCCccchhhHHHhhh-----cccccccceec
Confidence            447899999999999999999999999986 5668999988843     34444555543

>KOG0609|consensus

Probab=96.56  E-value=0.0013  Score=61.73  Aligned_cols=55  Identities=25%  Similarity=0.559  Sum_probs=44.9

Q ss_pred             ccEEEEeccccCCCCCC-------CccCCCCEEEEccccCCCCCeEEEeeC-----CeeeeccCCcccC
Q psy7076          38 YRRYRAIYEFVSRNGDE-------LSFQPGDIIMVPVKQNAEPGWLAGELR-----GQTGWFPESYVEP   94 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~e-------Ls~~~Gd~v~v~~~~~~~~~W~~g~~~-----g~~G~~P~~yv~~   94 (290)
                      ...++|+|||.+..++-       |+|++|||+.|+  .+++..||.+...     +..|++|++.++.
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv--~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIV--SQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeec--cCCCcchhhhhcccCccccccccccCHHHHH
Confidence            46889999999976544       799999999995  5588999999873     5579999987664

>KOG4429|consensus

Probab=96.54  E-value=0.00068  Score=58.80  Aligned_cols=55  Identities=15%  Similarity=0.191  Sum_probs=49.3

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..|.++|.|++...+||-..+||++.+-++...|||.|++.++     .|.||+.||++.
T Consensus       364 ~lcdafYSfqarqddel~~e~gditif~Ekkeeg~~f~rl~gd-----~~hf~Aa~iEea  418 (421)
T KOG4429|consen  364 ILCDAFYSFQARQDDELGGEIGDITIFDEKKEEGPTFCRLLGD-----FEHFHAAEIEEA  418 (421)
T ss_pred             HHhhhhhccccccccccCCcccceeeecCcccCCCceeeeccc-----cCCCcHHHHHHh
Confidence            4478999999999999999999999888889999999999854     789999999864

>KOG4575|consensus

Probab=96.47  E-value=0.0049  Score=58.84  Aligned_cols=59  Identities=24%  Similarity=0.459  Sum_probs=46.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      +..++|+|.+..+...+|.|..||+|+++...+ |||++.+... + ...|+||+|||..++
T Consensus         8 p~~vrA~y~w~ge~eGdl~f~egDlie~trI~d-gkwwi~lhrN-k-~~~g~fpsNFvhcLd   66 (874)
T KOG4575|consen    8 PCMVRALYAWPGEREGDLKFTEGDLIEQTRIED-GKWWILLHRN-K-DEDGLFPSNFVHCLD   66 (874)
T ss_pred             CceEEeeccCCCCcccccceecccceeEEeecc-ceeeeeeeec-c-cccccCcccceeecc
Confidence            456899999999999999999999999998855 5665554432 2 247999999997654

>KOG0609|consensus

Probab=96.22  E-value=0.0014  Score=61.48  Aligned_cols=60  Identities=17%  Similarity=0.377  Sum_probs=47.8

Q ss_pred             CCceEEeccCCCCC-------CCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATS-------SEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~-------~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..+++|+|||++..       ...|+|++||++.|+.+.|..||.++..+.-..+..|++|+...+.
T Consensus       214 ~~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~nWWQA~~~~~~~~~~AGLiPS~~~qe  280 (542)
T KOG0609|consen  214 VVFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPNWWQARRVGDPFGGLAGLIPSKELQE  280 (542)
T ss_pred             eeeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcchhhhhcccCccccccccccCHHHHH
Confidence            36789999998765       4689999999999999999999999988531223579999876554

>KOG3565|consensus

Probab=96.19  E-value=0.0023  Score=62.70  Aligned_cols=64  Identities=28%  Similarity=0.649  Sum_probs=55.1

Q ss_pred             CCCCCCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCCc
Q psy7076          32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD   96 (290)
Q Consensus        32 ~~~~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~~   96 (290)
                      ..+.+..+.+.|+|.|.++.++++++.+|+++.+++. +..+||-+++  .++..|+||.+||+...
T Consensus       572 ~~~~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~-~~g~gwt~~r~~~~~~~g~~Ptsyl~~~~  637 (640)
T KOG3565|consen  572 PIPSPPIRTSKALYAFEGQSEGTISIDPGEILQVIEE-DKGDGWTRGRLEPNGEKGYVPTSYLDVTE  637 (640)
T ss_pred             CCCCCCccceecccCcCCCCCCccccCcchhHHHHhh-cccCCCCCCCCCCCCcCCCCCcccccccc
Confidence            3344556789999999999999999999999999854 5788999998  69999999999998654

>KOG1451|consensus

Probab=95.98  E-value=0.009  Score=56.71  Aligned_cols=56  Identities=27%  Similarity=0.536  Sum_probs=47.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEE-EEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~-v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+.+.++|...+....+++|..|.++. |.+...+||..|+++++     +|++|.|||+.+
T Consensus       756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~e~Gwl~GtLnGk-----tglip~nyve~l  812 (812)
T KOG1451|consen  756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESNEDGWLVGTLNGK-----TGLIPSNYVEPL  812 (812)
T ss_pred             cccccceeccCCCCcccccccCcceeeeecccCCCCceeeecCCC-----cccCcccccCcC
Confidence            445788999999999999999999985 55567889999999843     899999999863

>KOG3565|consensus

Probab=95.31  E-value=0.0037  Score=61.24  Aligned_cols=58  Identities=22%  Similarity=0.545  Sum_probs=48.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...+.++|.|.++.++++++..|+++.+++. ..+||-+++....   +..|+||.+|++..
T Consensus       578 ~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~g~gwt~~r~~~~---~~~g~~Ptsyl~~~  636 (640)
T KOG3565|consen  578 IRTSKALYAFEGQSEGTISIDPGEILQVIEEDKGDGWTRGRLEPN---GEKGYVPTSYLDVT  636 (640)
T ss_pred             ccceecccCcCCCCCCccccCcchhHHHHhhcccCCCCCCCCCCC---CcCCCCCccccccc
Confidence            4558899999999999999999999999987 5679999883322   34899999999874

>KOG0199|consensus

Probab=94.67  E-value=0.03  Score=54.88  Aligned_cols=51  Identities=27%  Similarity=0.283  Sum_probs=41.0

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCccc
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVE   93 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~   93 (290)
                      .++++||  ..+++-|.|++||.|.|++. ....-||+|++  +++.|.||.+-|-
T Consensus       378 ~a~~~~d--~~ep~aLh~~kgD~IvVIeg-s~a~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  378 VARETYD--SIEPGALHLTKGDEIVVIEG-SGAGYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             eeeeecc--ccCCCceeeccCCeEEEEec-CCccceeeccccccceecccCcceee
Confidence            4555555  68899999999999999864 34456999965  8999999998876

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.21  E-value=0.16  Score=32.90  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=29.5

Q ss_pred             ceecCCCEEEEEeecCC--eEEEE-eCCeeEEecCCCeE
Q psy7076         120 LTFNQDEVIYVTKKEND--WWTGT-IGDRTGLFPSNYVV  155 (290)
Q Consensus       120 L~~~~G~~v~v~~~~~~--W~~~~-~~g~~G~~P~~~v~  155 (290)
                      -.+..|+.|.++....+  |++++ .++..||+...||+
T Consensus        17 ~~l~~g~~v~v~~~~~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   17 GQLPKGEKVTVLGESGDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEEETTSEEEEEEEETT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEEeCCCEEEEEEEcCCcEEEEEECcCCcEEEEEccccC
Confidence            35688999999988444  99994 48999999999885

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=94.00  E-value=0.063  Score=34.86  Aligned_cols=37  Identities=24%  Similarity=0.604  Sum_probs=27.6

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCccc
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVE   93 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~   93 (290)
                      .+..|+.|.|+... .+.+|++.+ .+|..||+...||+
T Consensus        18 ~l~~g~~v~v~~~~-~~~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGES-GDGNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEE-TT--EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEc-CCcEEEEEECcCCcEEEEEccccC
Confidence            46789999997542 233399994 59999999999974

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=93.90  E-value=0.094  Score=37.45  Aligned_cols=42  Identities=14%  Similarity=0.218  Sum_probs=28.1

Q ss_pred             CCCceecCCCEEEEEee-cCCeEEEEe-CCeeEEecCCCeEecC
Q psy7076         117 PGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYE  158 (290)
Q Consensus       117 ~~eL~~~~G~~v~v~~~-~~~W~~~~~-~g~~G~~P~~~v~~~~  158 (290)
                      ..+|.+++|+++.|++. +.+-|.|++ .|+-|+++.+++-..+
T Consensus        30 ~kDLpi~~GE~LeVI~~t~~~kvlCRN~~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   30 GKDLPIKPGEILEVIQFTDDNKVLCRNSEGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             TTB----TT-B-EEEEESSSSEEEEEETTTEEEEEEGGGS----
T ss_pred             cccCCcCCCCEEEEEEeCCCCeEEEeCCCCceeEEEHHHccCCC
Confidence            46799999999999998 677788888 8999999999885544

>KOG0199|consensus

Probab=93.89  E-value=0.068  Score=52.52  Aligned_cols=54  Identities=26%  Similarity=0.446  Sum_probs=42.5

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      +.+..+|+...++.|.|++||.|.|++.. .+.||.|...   |.+..|.||.+-|..
T Consensus       377 ~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a~y~WfgQn~---Rn~kvG~Fprsvvt~  431 (1039)
T KOG0199|consen  377 AVARETYDSIEPGALHLTKGDEIVVIEGSGAGYDWFGQNK---RNQKVGTFPRSVVTA  431 (1039)
T ss_pred             ceeeeeccccCCCceeeccCCeEEEEecCCccceeecccc---ccceecccCcceeee
Confidence            34455566677899999999999999974 4689999764   445699999998884

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=93.57  E-value=0.093  Score=37.47  Aligned_cols=45  Identities=11%  Similarity=0.143  Sum_probs=29.9

Q ss_pred             CCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         231 SSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       231 ~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      +.-+|.+++||++.|++..+.+-|.++..    .|+.|+++.+++-+..
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~kvlCRN~----~GKYGYV~~~~L~~~d   73 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDNKVLCRNS----EGKYGYVLRSHLLPLD   73 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSSEEEEEET----TTEEEEEEGGGS----
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEeCC----CCceeEEEHHHccCCC
Confidence            45799999999999999999999999965    3569999999986643

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=93.53  E-value=0.081  Score=44.47  Aligned_cols=100  Identities=19%  Similarity=0.284  Sum_probs=65.2

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccCCC---ccceEEEEcccCCCCCCCCceecCCCEEEEE
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETGE---VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVT  131 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~~~---~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~  131 (290)
                      ++++||.|.|+.. +...+|..++. +|+.|||+..++...+....   .....++.+-.-...-  .=.++.|..+.+.
T Consensus        49 ~i~~Ge~vtvl~~-~~~~~~~qI~~~~g~t~wi~~~~lt~e~s~~~~~p~~~~nVr~~t~t~~~v--~g~~~~~t~~~~~  125 (205)
T COG3103          49 SIKAGEKVTVLGT-DGNTGYYQIRDSSGRTGWILSKNLTSEPSSNERVPDLELNVRELTKTLSNV--DGTWKQGTAVMQI  125 (205)
T ss_pred             EecCCcEEEEEEE-cCcccEEEEEecCCceEEEechhhccccccceecCchhhhhhhcccchhhh--hhhhhcCcEEEEE
Confidence            7899999999753 34557999987 99999999999876543211   0011111111111110  1245677888787


Q ss_pred             eec-CCeEEEEeCCeeEEecCCCeEecC
Q psy7076         132 KKE-NDWWTGTIGDRTGLFPSNYVVPYE  158 (290)
Q Consensus       132 ~~~-~~W~~~~~~g~~G~~P~~~v~~~~  158 (290)
                      ... ++|......++.|++-..|+..-.
T Consensus       126 sk~~~~w~~~~~~~k~~~vs~q~~~~~~  153 (205)
T COG3103         126 SKTQNNWYIITLKGKNGYVSGQLVTAQS  153 (205)
T ss_pred             eeccccchhhhhhcccchhhhhheeccc
Confidence            774 889998889999998777665433

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=92.50  E-value=0.31  Score=31.65  Aligned_cols=35  Identities=14%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             ceecCCCEEEEEeecCCeEEEEeCCeeEEecCCCe
Q psy7076         120 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV  154 (290)
Q Consensus       120 L~~~~G~~v~v~~~~~~W~~~~~~g~~G~~P~~~v  154 (290)
                      ..+..|..+.++...++|.+.+.+|.+||++...|
T Consensus        19 ~~l~~g~~v~v~~~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIECRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEccCCeEEEEECCeEEeEEeeec
Confidence            56778999999988889999999999999987654

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=92.08  E-value=0.25  Score=32.12  Aligned_cols=35  Identities=29%  Similarity=0.579  Sum_probs=29.1

Q ss_pred             CccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcc
Q psy7076          55 LSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV   92 (290)
Q Consensus        55 Ls~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv   92 (290)
                      ..+.+|.++.|+.   ...+|.+.+.+|..||++.+.|
T Consensus        19 ~~l~~g~~v~v~~---~~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIE---CRGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEE---ccCCeEEEEECCeEEeEEeeec
Confidence            3578899999863   5778999999999999998765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=92.03  E-value=0.23  Score=33.06  Aligned_cols=36  Identities=25%  Similarity=0.427  Sum_probs=28.1

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCccc
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE   93 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~   93 (290)
                      .+..|+.|.|+..  ..++|++.+. +|..||++..++.
T Consensus        26 ~l~~g~~v~i~~~--~~~~W~~v~~~~g~~Gwi~~~~~~   62 (63)
T smart00287       26 TLKKGDKVKVLGV--DGQDWAKITYGSGQRGYVPGYVVN   62 (63)
T ss_pred             EecCCCEEEEEEc--cCCceEEEEcCCCCEEEEEeeeec
Confidence            4779999999643  2338999998 5999999877653

>PRK10884 SH3 domain-containing protein; Provisional

Probab=91.98  E-value=0.17  Score=42.77  Aligned_cols=41  Identities=17%  Similarity=0.370  Sum_probs=33.2

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      .+.+|+.|+|+.. ..+.+|.+.+. +|+.|||+..|+...+.
T Consensus        49 ~l~~G~~v~vl~~-~~~~~w~~Vr~~~G~~GWV~~~~Ls~~p~   90 (206)
T PRK10884         49 TLNAGEEVTLLQV-NANTNYAQIRDSKGRTAWIPLKQLSTTPS   90 (206)
T ss_pred             EEcCCCEEEEEEE-cCCCCEEEEEeCCCCEEeEEHHHhcCCcc
Confidence            6789999999753 23468999986 89999999999986543

>KOG3705|consensus

Probab=91.40  E-value=0.18  Score=46.15  Aligned_cols=53  Identities=25%  Similarity=0.345  Sum_probs=44.2

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccC
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP   94 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~   94 (290)
                      ..+|++++.++..+||.++.||+|-|-  .+..+|.-.|.+  .++.|+||+.-|+.
T Consensus       511 n~ivi~aH~prt~~ei~l~vGD~vgvA--GNHWdGySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  511 NVIVIEAHIPRTNKEIDLKVGDKVGVA--GNHWDGYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             ceEEEEecCCCcccccCcccCCeeeec--ccccccccccccccccccCCCccceeee
Confidence            368999999999999999999999993  345667777775  79999999977654

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=91.27  E-value=0.46  Score=31.54  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=29.0

Q ss_pred             ceecCCCEEEEEeecC-CeEEEEe-CCeeEEecCCCe
Q psy7076         120 LTFNQDEVIYVTKKEN-DWWTGTI-GDRTGLFPSNYV  154 (290)
Q Consensus       120 L~~~~G~~v~v~~~~~-~W~~~~~-~g~~G~~P~~~v  154 (290)
                      -.+..|+.+.++.... +|...+. +|..||++..++
T Consensus        25 ~~l~~g~~v~i~~~~~~~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       25 GTLKKGDKVKVLGVDGQDWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EEecCCCEEEEEEccCCceEEEEcCCCCEEEEEeeee
Confidence            3577899999998855 9999998 499999987665

>KOG3812|consensus

Probab=90.65  E-value=0.11  Score=46.31  Aligned_cols=46  Identities=30%  Similarity=0.749  Sum_probs=36.5

Q ss_pred             EEEcccCCCCCCCC-------ceecCCCEEEEEee-cCCeEEEEe---CCeeEEecC
Q psy7076         106 YIAAYPYDSTEPGD-------LTFNQDEVIYVTKK-ENDWWTGTI---GDRTGLFPS  151 (290)
Q Consensus       106 ~~a~~~y~~~~~~e-------L~~~~G~~v~v~~~-~~~W~~~~~---~g~~G~~P~  151 (290)
                      +.+..+|.+.-+++       ++|...|.+.|-++ +++||.|++   +...||+|+
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccchhHHHHhhcCCccccccc
Confidence            44566777765544       78999999999887 789999987   567899997

>KOG3705|consensus

Probab=89.96  E-value=0.35  Score=44.33  Aligned_cols=57  Identities=16%  Similarity=0.285  Sum_probs=44.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ....+++++..++..+|+.++.||.|.|-...=+|.-+|+...   .+++|+||+.-|++
T Consensus       509 AHn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWdGySKG~Nr~---t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  509 AHNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWDGYSKGTNRQ---TYKEGLFPSYKVRE  565 (580)
T ss_pred             ccceEEEEecCCCcccccCcccCCeeeeccccccccccccccc---ccccCCCccceeee
Confidence            3447899999999999999999999988876555555565432   35689999988876

>PRK10884 SH3 domain-containing protein; Provisional

Probab=88.51  E-value=0.62  Score=39.37  Aligned_cols=38  Identities=16%  Similarity=0.118  Sum_probs=31.8

Q ss_pred             ceecCCCEEEEEeec--CCeEEEEe-CCeeEEecCCCeEec
Q psy7076         120 LTFNQDEVIYVTKKE--NDWWTGTI-GDRTGLFPSNYVVPY  157 (290)
Q Consensus       120 L~~~~G~~v~v~~~~--~~W~~~~~-~g~~G~~P~~~v~~~  157 (290)
                      -.+..|+.|.|+...  .+|..++. +|++||++..|+...
T Consensus        48 ~~l~~G~~v~vl~~~~~~~w~~Vr~~~G~~GWV~~~~Ls~~   88 (206)
T PRK10884         48 GTLNAGEEVTLLQVNANTNYAQIRDSKGRTAWIPLKQLSTT   88 (206)
T ss_pred             EEEcCCCEEEEEEEcCCCCEEEEEeCCCCEEeEEHHHhcCC
Confidence            357899999999873  58999987 899999999988653

>KOG3812|consensus

Probab=88.49  E-value=0.29  Score=43.78  Aligned_cols=53  Identities=17%  Similarity=0.356  Sum_probs=40.5

Q ss_pred             CCCccEEEEeccccCCCCCC-------CccCCCCEEEEccccCCCCCeEEEee---CCeeeeccC
Q psy7076          35 VSEYRRYRAIYEFVSRNGDE-------LSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPE   89 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~e-------Ls~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~   89 (290)
                      ++.-.-+++.-+|.+...++       ++|...|.|.|-+  +-+.+||.|++   +...|++|.
T Consensus        55 KpVAFAV~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIke--KynnDWWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   55 KPVAFAVRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKE--KYNNDWWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             CCceEEEEeccccCCccCCCCCCCCceeeeccccceeehh--hcccchhHHHHhhcCCccccccc
Confidence            34445567777888865544       7899999999943  46788999987   677899997

>KOG0040|consensus

Probab=86.50  E-value=0.019  Score=59.90  Aligned_cols=61  Identities=26%  Similarity=0.623  Sum_probs=52.5

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ..+.++|+|+...+-+.+.++||++.++....-.||..+++++     .|++|+.||+.+.....+
T Consensus       969 ~~v~alyd~q~kSprev~mKkgDvltll~s~nkdwwkve~~d~-----qg~vpa~yvk~~~~~~~~ 1029 (2399)
T KOG0040|consen  969 ECVLALYDYQEKSPREVTMKKGDVLTLLNSINKDWWKVEVNDR-----QGFVPAAYVKRLDPGSAS 1029 (2399)
T ss_pred             HHHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccccccchhhhh-----cCcchHHHHHHhccCCcc
Confidence            3467899999999999999999999888888899999999975     599999999987654433

>KOG0040|consensus

Probab=86.15  E-value=0.034  Score=58.18  Aligned_cols=60  Identities=20%  Similarity=0.475  Sum_probs=52.7

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      |...+.|+|+|+-..+.+.+.++||++..+..  ....||.+++..+.|++|+.||+.+.+.
T Consensus       967 g~~~v~alyd~q~kSprev~mKkgDvltll~s--~nkdwwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  967 GKECVLALYDYQEKSPREVTMKKGDVLTLLNS--INKDWWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHhhhhHHHHHhh--cccccccchhhhhcCcchHHHHHHhccC
Confidence            55667899999999999999999999997533  5678999999999999999999988765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	290
1ue9_A	80	Solution Structure Of The Fourth Sh3 Domain Of Huma		2e-19
1uhf_A	69	Solution Structure Of The Third Sh3 Domain Of Human		7e-16
1uec_A	193	Crystal Structure Of Autoinhibited Form Of Tandem S		2e-12
1wlp_B	138	Solution Structure Of The P22phox-P47phox Complex L		2e-12
1uff_A	93	Solution Structure Of The First Sh3 Domain Of Human		4e-12
1ng2_A	193	Structure Of Autoinhibited P47phox Length = 193		5e-12
1ov3_A	138	Structure Of The P22phox-P47phox Complex Length = 1		6e-12
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		6e-09
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		8e-05
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		6e-08
2kbt_A	142	Attachment Of An Nmr-Invisible Solubility Enhanceme		6e-04
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		1e-07
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		1e-07
2yuo_A	78	Solution Structure Of The Sh3 Domain Of Mouse Run A		3e-07
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		3e-07
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		2e-04
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		3e-07
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		3e-06
1zsg_A	65	Beta Pix-Sh3 Complexed With An Atypical Peptide Fro		1e-04
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		5e-07
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		3e-05
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		6e-07
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		3e-05
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		6e-07
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		7e-07
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		9e-07
2dm1_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		1e-06
1ugv_A	72	Solution Structure Of The Sh3 Domain Of Human Olygo		1e-06
3i35_A	60	Human Sh3 Domain Of Protein Lasp1 Length = 60		2e-06
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		2e-06
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		2e-04
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		3e-06
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		1e-05
2ak5_A	64	Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length		7e-04
2jte_A	64	Third Sh3 Domain Of Cd2ap Length = 64		3e-06
2jte_A	64	Third Sh3 Domain Of Cd2ap Length = 64		2e-05
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		5e-06
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		1e-05
2df6_A	59	Crystal Structure Of The Sh3 Domain Of Betapix In C		7e-04
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		5e-06
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		1e-05
2esw_A	61	Atomic Structure Of The N-Terminal Sh3 Domain Of Mo		9e-04
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		6e-06
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		8e-06
1gri_A	217	Grb2 Length = 217		1e-05
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		1e-05
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		2e-05
2xmf_A	60	Myosin 1e Sh3 Length = 60		1e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		1e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		2e-05
1ujy_A	76	Solution Structure Of Sh3 Domain In RacCDC42 GUANIN		4e-04
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		2e-05
1wa7_A	65	Sh3 Domain Of Human Lyn Tyrosine Kinase Length = 65		2e-05
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		2e-05
1x2k_A	68	Solution Structure Of The Sh3 Domain Of Human Osteo		2e-05
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		2e-05
1k4u_S	62	Solution Structure Of The C-Terminal Sh3 Domain Of		2e-05
2dyb_A	341	The Crystal Structure Of Human P40(Phox) Length = 3		2e-05
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		3e-05
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		7e-05
1w6x_A	60	Sh3 Domain Of P40phox, Component Of The Nadph Oxida		3e-05
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		3e-05
1zlm_A	58	Crystal Structure Of The Sh3 Domain Of Human Osteoc		3e-05
3u23_A	65	Atomic Resolution Crystal Structure Of The 2nd Sh3		4e-05
1z9q_A	79	Solution Structure Of Sh3 Domain Of P40phox Length		4e-05
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		4e-05
1gcq_A	61	Crystal Structure Of Vav And Grb2 Sh3 Domains Lengt		1e-04
2vvk_A	56	Grb2 Sh3c (1) Length = 56		5e-05
2vvk_A	56	Grb2 Sh3c (1) Length = 56		2e-04
2cub_A	88	Solution Structure Of The Sh3 Domain Of The Human C		5e-05
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		5e-05
1io6_A	59	Growth Factor Receptor-Bound Protein 2 (Grb2) C-Ter		1e-04
2a28_A	54	Atomic-Resolution Crystal Structure Of The Second S		5e-05
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		5e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		6e-05
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		6e-05
1ark_A	60	Sh3 Domain From Human Nebulin, Nmr, 15 Structures L		6e-05
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		6e-05
2lj0_A	65	The Third Sh3 Domain Of R85fl Length = 65		6e-05
2lj1_A	64	The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Len		6e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		6e-05
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		6e-05
4glm_A	72	Crystal Structure Of The Sh3 Domain Of Dnmbp Protei		6e-05
2js0_A	61	Solution Structure Of Second Sh3 Domain Of Adaptor		6e-05
2fei_A	65	Solution Structure Of The Second Sh3 Domain Of Huma		6e-05
4f14_A	64	Structure Of The Sh3 Domain Of Human Nebulette In C		8e-05
4iim_A	70	Crystal Structure Of The Second Sh3 Domain Of Itsn1		8e-05
4iim_A	70	Crystal Structure Of The Second Sh3 Domain Of Itsn1		8e-05
1ynz_A	58	Sh3 Domain Of Yeast Pin3 Length = 58		1e-04
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		1e-04
2frw_A	57	Solution Structure Of The Second Sh3 Domain Of Huma		1e-04
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		1e-04
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		1e-04
2krm_A	57	Rdc Refined Solution Structure Of The First Sh3 Dom		1e-04
2dl4_A	68	Solution Structure Of The First Sh3 Domain Of Stac		1e-04
1wi7_A	68	Solution Structure Of The Sh3 Domain Of Sh3-Domain		1e-04
2j6f_A	62	N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog)		1e-04
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		1e-04
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		1e-04
2vwf_A	58	Grb2 Sh3c (2) Length = 58		2e-04
2f2x_A	62	Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62		2e-04
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		2e-04
2ew3_A	68	Solution Structure Of The Sh3 Domain Of Human Sh3gl		2e-04
1wxu_A	93	Solution Structure Of The Sh3 Domain Of Mouse Perox		3e-04
2k3b_A	62	Seeing The Invisible: Structures Of Excited Protein		3e-04
2ed1_A	76	Solution Structure Of The Sh3 Domain Of 130 Kda Pho		3e-04
1x2p_A	68	Solution Structure Of The Sh3 Domain Of The Protein		3e-04
2rpn_A	59	A Crucial Role For High Intrinsic Specificity In Th		4e-04
1jo8_A	58	Structural Analysis Of The Yeast Actin Binding Prot		4e-04
1qkw_A	62	Alpha-Spectrin Src Homology 3 Domain, N47g Mutant I		5e-04
2nwm_A	65	Solution Structure Of The First Sh3 Domain Of Human		6e-04
2e5k_A	94	Solution Structure Of Sh3 Domain In Suppressor Of T		7e-04
1x6b_A	79	Solution Structures Of The Sh3 Domain Of Human Rho		7e-04
1neg_A	83	Crystal Structure Analysis Of N-And C-Terminal Labe		8e-04
2f2w_A	62	Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62		8e-04
4hxj_A	60	Crystal Structure Of Sh3:rgt Complex Length = 60		8e-04
2cdt_A	62	Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62		8e-04
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		9e-04
4e6r_A	58	Crystal Structure Of A Cytoplasmic Protein Nck2 (Nc		9e-04
4esr_A	69	Molecular And Structural Characterization Of The Sh		9e-04

>pdb|1UE9|A Chain A, Solution Structure Of The Fourth Sh3 Domain Of Human Intersectin 2 (Kiaa1256) Length = 80

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/65 (66%), Positives = 53/65 (81%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G   EIA V + Y A+ SEQLSL+ GQLI+I KK T+GWW+GELQA+GKKRQ GWFPAS+
Sbjct: 4   GSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASH 63
Query: 275 VKVMG 279
           VK++G
Sbjct: 64  VKLLG 68

>pdb|1UHF|A Chain A, Solution Structure Of The Third Sh3 Domain Of Human Intersectin 2(Kiaa1256) Length = 69

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 45/56 (80%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA 159
           E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++
Sbjct: 9   EEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDS 64

>pdb|1UEC|A Chain A, Crystal Structure Of Autoinhibited Form Of Tandem Sh3 Domain Of P47phox Length = 193

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 29  STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
           + D TG    + YRAI ++   +G E++   GD+  V V + +E GW   +++ + GW P
Sbjct: 2   AMDITGPIILQTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIP 59
Query: 89  ESYVEPC---DETGEVVPEY----YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG 140
            S++EP    DET +  P Y    Y+A   Y + E  +++  + E + V  K  D WW  
Sbjct: 60  ASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI 119
Query: 141 TIGDRTGLFPSNYV 154
              D TG FPS Y+
Sbjct: 120 RKDDVTGYFPSMYL 133

>pdb|1WLP|B Chain B, Solution Structure Of The P22phox-P47phox Complex Length = 138

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 10/133 (7%)
Query: 30  TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPE 89
           +D TG    + YRAI ++   +G E++   GD+  V V + +E GW   +++ + GW P 
Sbjct: 2   SDITGPIILQTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIPA 59
Query: 90  SYVEPC---DETGEVVPEY----YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT 141
           S++EP    DET +  P Y    Y+A   Y + E  +++  + E + V  K  D WW   
Sbjct: 60  SFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR 119
Query: 142 IGDRTGLFPSNYV 154
             D TG FPS Y+
Sbjct: 120 KDDVTGYFPSMYL 132

>pdb|1UFF|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Intersectin2 (Kiaa1256) Length = 93

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 34  GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           G S    YRA+Y F +RN DE+SF  GDII V  K   EPGWL G  +G  GWFP +YVE
Sbjct: 1   GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60
Query: 94  --PCDETGEVV 102
             P  E  + V
Sbjct: 61  KMPSSENEKAV 71

>pdb|1NG2|A Chain A, Structure Of Autoinhibited P47phox Length = 193

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 32  PTGVSEY---RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
           P G  E+   + YRAI ++   +G E++   GD+  V V + +E GW   +++ + GW P
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIP 59
Query: 89  ESYVEPC---DETGEVVPEY----YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG 140
            S++EP    DET +  P Y    Y+A   Y + E  +++  + E + V  K  D WW  
Sbjct: 60  ASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI 119
Query: 141 TIGDRTGLFPSNYV 154
              D TG FPS Y+
Sbjct: 120 RKDDVTGYFPSMYL 133

>pdb|1OV3|A Chain A, Structure Of The P22phox-P47phox Complex Length = 138

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 69/134 (51%), Gaps = 13/134 (9%)
Query: 32  PTGVSEY---RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
           P G  E+   + YRAI ++   +G E++   GD+  V V + +E GW   +++ + GW P
Sbjct: 2   PLGSPEFIILQTYRAIADYEKTSGSEMALSTGDV--VEVVEKSESGWWFCQMKAKRGWIP 59
Query: 89  ESYVEPC---DETGEVVPEY----YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG 140
            S++EP    DET +  P Y    Y+A   Y + E  +++  + E + V  K  D WW  
Sbjct: 60  ASFLEPLDSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVI 119
Query: 141 TIGDRTGLFPSNYV 154
              D TG FPS Y+
Sbjct: 120 RKDDVTGYFPSMYL 133

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 83  QTGWFPESYVEPCDETGE-VVPEYY-----IAAYPYDSTEPGDLTFNQDEVIYVTKKEN- 135
           Q GWFP S+V+    + E   P ++     IA Y Y +    +L+F++ ++I V  K++ 
Sbjct: 8   QKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDP 67
Query: 136 DWWTGTIGDRTGLFPSNYV 154
           DWW G I   TGLFPSNYV
Sbjct: 68  DWWQGEINGVTGLFPSNYV 86

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           Y A + ++LS S+GQLI +  K    WW+GE+         G FP++YVK+
Sbjct: 43  YAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV-----TGLFPSNYVKM 88

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 54.7 bits (130), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 42  RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 101
           +A Y+F +R+  ELS + GDII + + +  + GW  GE+ G+ GWFP +YVE  ++  E 
Sbjct: 9   KARYDFCARDRSELSLKEGDIIKI-LNKKGQQGWWRGEIYGRIGWFPSNYVE--EDYSEY 65
Query: 102 VPE 104
           +PE
Sbjct: 66  LPE 68

>pdb|2KBT|A Chain A, Attachment Of An Nmr-Invisible Solubility Enhancement Tag (Inset) Using A Sortase-Mediated Protein Ligation Method Length = 142

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 15/74 (20%)
Query: 227 YTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPASYV---------K 276
           + A    +LSL  G +I ++ KK   GWW GE+  +     +GWFP++YV         +
Sbjct: 14  FCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGR-----IGWFPSNYVEEDYSEYLPE 68
Query: 277 VMGGGGISIQKYLI 290
             GG G S+   LI
Sbjct: 69  TGGGSGSSMTYKLI 82

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
           +A Y +   E GDL F + +VI + KK   +NDWWTG +  R G+FP+NYV
Sbjct: 7   VALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
           +A Y +   +PGDL F + +VI + KK   +NDWWTG    + G+FP+NYV
Sbjct: 7   VALYNFAGEQPGDLAFKKGDVITILKKSDSQNDWWTGRTNGKEGIFPANYV 57

>pdb|2YUO|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Run And Tbc1 Domain Containing 3 Length = 78

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/76 (42%), Positives = 43/76 (56%), Gaps = 5/76 (6%)
Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           S  RR +A+ +F   + DEL F+  DII + + Q  E  W+ GEL G  GWFP  +VE  
Sbjct: 5   SSGRRAKALLDFERHDDDELGFRKNDIITI-ISQKDEHCWV-GELNGLRGWFPAKFVEVL 62
Query: 96  DETGEVVPEYYIAAYP 111
           DE  +   EY IA+ P
Sbjct: 63  DERSK---EYSIASGP 75

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          S  R  +A+Y F +R  DEL+ + GDI+++  K+  E GW  G L G+ G FP +YVE
Sbjct: 5  SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKK--EEGWWFGSLNGKKGHFPAAYVE 60

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G    +   L  + A   ++L+L +G +++I +K   GWW G L   GKK   G FPA+Y
Sbjct: 4   GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--GKK---GHFPAAY 58
Query: 275 VKVM 278
           V+ +
Sbjct: 59  VEEL 62

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          RA + F   N DELSF  GD+I V   +  E GW  G L G+TGWFP +YV   
Sbjct: 12 RAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTLNGRTGWFPSNYVREV 63

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVVPYEA 159
           A + +  T   +L+F++ +VI+VT+ +E  WW GT+  RTG FPSNYV   +A
Sbjct: 13  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGRTGWFPSNYVREVKA 65

>pdb|1ZSG|A Chain A, Beta Pix-Sh3 Complexed With An Atypical Peptide From Alpha- Pak Length = 65

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%), Gaps = 5/50 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +  T+ ++LS S+G +I + +    GWWEG L  +      GWFP++YV+
Sbjct: 17  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTLNGR-----TGWFPSNYVR 61

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + +A+Y++ ++ GDEL+F+ GD I+V  K  A  GW  GEL G+ GW P +YV+
Sbjct: 6  QVKALYDYDAQTGDELTFKEGDTIIVHQKDPA--GWWEGELNGKRGWVPANYVQ 57

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           L  Y A + ++L+   G  I++ +K   GWWEGEL  K      GW PA+YV+
Sbjct: 10  LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGK-----RGWVPANYVQ 57

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + +A+Y++ ++ GDEL+F+ GD I+V  K  A  GW  GEL G+ GW P +YV+
Sbjct: 5  QVKALYDYDAQTGDELTFKEGDTIIVHQKDPA--GWWEGELNGKRGWVPANYVQ 56

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 5/53 (9%)
Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           L  Y A + ++L+   G  I++ +K   GWWEGEL  K      GW PA+YV+
Sbjct: 9   LYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGK-----RGWVPANYVQ 56

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 51.6 bits (122), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 160
           ++  A + ++  E G+L F + +VI +  K++ +WW G + +R G+FPSNYV PY + 
Sbjct: 3   KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPYNSN 60

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 160
           ++  A + ++  E G+L F + +VI +  K++ +WW G + +R G+FPSNYV PY + 
Sbjct: 5   KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVAPYNSN 62

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 157
           ++  A + ++  E G+L F + +VI +  K++ +WW G + +R G+FPSNYV PY
Sbjct: 3   KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57

>pdb|2DM1|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Protein Vav-2 Length = 73

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A Y F +R+  ELS + GD++ +  +   + GW  GE  G+ GWFP +YVE
Sbjct: 12 ARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVE 62

>pdb|1UGV|A Chain A, Solution Structure Of The Sh3 Domain Of Human Olygophrein-1 Like Protein (Kiaa0621) Length = 72

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +R+ +A+Y   + +  ELSF  G  +   V  + EPGWL G L G+TG  PE+YVE
Sbjct: 10 FRKAKALYACKAEHDSELSFTAG-TVFDNVHPSQEPGWLEGTLNGKTGLIPENYVE 64

>pdb|3I35|A Chain A, Human Sh3 Domain Of Protein Lasp1 Length = 60

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 4/59 (6%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAG--ELRGQTGWFPESYVEPC 95
          +RYRA+Y++ + + DE+SFQ GD I V V+Q  + GW+ G  E  G TG  P +YVE  
Sbjct: 4  KRYRAVYDYSAADEDEVSFQDGDTI-VNVQQ-IDDGWMYGTVERTGDTGMLPANYVEAI 60

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           IA Y Y +    +L+F++ ++I V  K++ DWW G I   TGLFPSNYV
Sbjct: 22  IAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNYV 70

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           Y A + ++LS S+GQLI +  K    WW+GE+         G FP++YVK+
Sbjct: 27  YAANNEDELSFSKGQLINVMNKDDPDWWQGEINGV-----TGLFPSNYVKM 72

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          RA + F   N DELSF  GD+I V   +  E GW  G   G+TGWFP +YV
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYV 58

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
           A + +  T   +L+F++ +VI+VT+ +E  WW GT   RTG FPSNYV
Sbjct: 11  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2AK5|A Chain A, Beta Pix-Sh3 Complexed With A Cbl-B Peptide Length = 64

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +  T+ ++LS S+G +I + +    GWWEG    +      GWFP++YV+
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNYVR 59

>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap Length = 64

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          G  EY   R ++ +   N DEL+F+ G+II +  K+  E GW  GEL G+ G FP+++
Sbjct: 4  GAKEY--CRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNF 59

>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap Length = 64

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVV 155
           EY    +PY  T   +LTF + E+I++  KE     WW G +  + G+FP N+ V
Sbjct: 7   EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAV 61

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          RA + F   N DELSF  GD+I V   +  E GW  G   G+TGWFP +YV
Sbjct: 8  RAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYV 56

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
           A + +  T   +L+F++ +VI+VT+ +E  WW GT   RTG FPSNYV
Sbjct: 9   AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 56

>pdb|2DF6|A Chain A, Crystal Structure Of The Sh3 Domain Of Betapix In Complex With A High Affinity Peptide From Pak2 Length = 59

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +  T+ ++LS S+G +I + +    GWWEG    +      GWFP++YV+
Sbjct: 13  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNYVR 57

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          RA + F   N DELSF  GD+I V   +  E GW  G   G+TGWFP +YV
Sbjct: 10 RAKFNFQQTNEDELSFSKGDVIHVT--RVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
           A + +  T   +L+F++ +VI+VT+ +E  WW GT   RTG FPSNYV
Sbjct: 11  AKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>pdb|2ESW|A Chain A, Atomic Structure Of The N-Terminal Sh3 Domain Of Mouse Beta Pix,P21-Activated Kinase (Pak)-Interacting Exchange Factor Length = 61

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +  T+ ++LS S+G +I + +    GWWEG    +      GWFP++YV+
Sbjct: 15  FQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNYVR 59

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +G S  + YRA+Y++ ++N DEL    GDI+ V ++   E GW   E  GQ G+ P SY+
Sbjct: 3  SGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILE--GEDGWWTVERNGQRGFVPGSYL 60
Query: 93 E 93
          E
Sbjct: 61 E 61

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%), Gaps = 12/74 (16%)
Query: 82  GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTG 140
           G   W P SY+E             +A Y Y   +  +L+F +  +IYV KK +D W+ G
Sbjct: 7   GDPPWAPRSYLEKV-----------VAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEG 55
Query: 141 TIGDRTGLFPSNYV 154
            +   TGLFP NYV
Sbjct: 56  VMNGVTGLFPGNYV 69

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           P Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV P
Sbjct: 158 PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 212

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           I  Y Y +    +L F++ ++I V  KE+ DWW G +  + GLFPSNYV
Sbjct: 6   IGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYV 54

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 33/51 (64%), Gaps = 5/51 (9%)
Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           YTA + ++L+ S+GQ+I +  K    WW+GE+       QVG FP++YVK+
Sbjct: 11  YTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSG-----QVGLFPSNYVKL 56

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 34/48 (70%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKE-NDWWTGTIGDRTGLFPSNYV 154
           A Y YD+ +  +L+FN +++I + K++ + WWTG +  + GLFP+NYV
Sbjct: 10  ALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +A + F   N DELS   GDII V   +  E GW  G L G+TGWFP +YV
Sbjct: 14 KARFNFKQTNEDELSVCKGDIIYVT--RVEEGGWWEGTLNGRTGWFPSNYV 62

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
           A + +  T   +L+  + ++IYVT+ +E  WW GT+  RTG FPSNYV
Sbjct: 15  ARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYV 62

>pdb|1UJY|A Chain A, Solution Structure Of Sh3 Domain In RacCDC42 GUANINE Nucleotide Exchange Factor(Gef) 6 Length = 76

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           I      +  T+ ++LS+ +G +I + +    GWWEG L  +      GWFP++YV+
Sbjct: 12  IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGR-----TGWFPSNYVR 63

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVV 155
           P    A Y ++  +PGDL F   + I V  K +   DWW G +  +TG+FP+NYV 
Sbjct: 17  PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVT 72

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          RA+Y+F   N  EL F+ GDII +      +  W  G L GQ+G+FP +YVE
Sbjct: 15 RALYDFEPENEGELGFKEGDIITL--TNQIDENWYEGMLHGQSGFFPINYVE 64

>pdb|1X2K|A Chain A, Solution Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor 1 (Ostf1) Length = 68

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYVV 155
           + A Y ++   P +L F + ++IY+T   + +WW GT   RTGL PSNYV 
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVA 60

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 40  RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 93
           R RA+Y++  +  DELSF+ GD +   ++   E GW  G L  GQ G +P +YVE
Sbjct: 430 RVRALYDYEGQEHDELSFKAGDEL-TKMEDEDEQGWCKGRLDNGQVGLYPANYVE 483

>pdb|1K4U|S Chain S, Solution Structure Of The C-Terminal Sh3 Domain Of P67phox Complexed With The C-Terminal Tail Region Of P47phox Length = 62

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +  A++ + +   ++L FQ GDII+V  K N E  WL GE +G+ G FP+ +VE
Sbjct: 7  QVEALFSYEATQPEDLEFQEGDIILVLSKVNEE--WLEGESKGKVGIFPKVFVE 58

>pdb|2DYB|A Chain A, The Crystal Structure Of Human P40(Phox) Length = 341

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 29  STDPTGVSEYR----RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT 84
           S  P G S  R    R  A+++F   +  EL+F+ GD+I +  + N +  WL G +RG T
Sbjct: 161 SVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGAT 218
Query: 85  GWFPESYVEPC-DETGEVVPEYYIAAYPYDST 115
           G FP S+V+   D   E  P  ++  Y Y+ T
Sbjct: 219 GIFPLSFVKILKDFPEEDDPTNWLRCYYYEDT 250

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + I+ + ++N DEL+ + GDI+ +  K   + GW  GEL G+ G FP+++V+
Sbjct: 11 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 62

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPA 272
           G   +   V+ PY A + ++L++  G ++ +  K     GWWEGEL  +      G FP 
Sbjct: 4   GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGR-----RGVFPD 58
Query: 273 SYVKVMGG 280
           ++VK++ G
Sbjct: 59  NFVKLLSG 66

>pdb|1W6X|A Chain A, Sh3 Domain Of P40phox, Component Of The Nadph Oxidase Length = 60

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          ++ R  A+++F   +  EL+F+ GD+I +  + N +  WL G +RG TG FP S+V+
Sbjct: 3  KHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGATGIFPLSFVK 57

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          E R+ RAIY+F +   +EL+F+ G+II V    +++P W  GE     G FP ++V
Sbjct: 16 EARKVRAIYDFEAAEDNELTFKAGEIITVL--DDSDPNWWKGETHQGIGLFPSNFV 69

>pdb|1ZLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Human Osteoclast Stimulating Factor Length = 58

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
           + A Y ++   P +L F + ++IY+T   + +WW GT   RTGL PSNYV
Sbjct: 6   FRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55

>pdb|3U23|A Chain A, Atomic Resolution Crystal Structure Of The 2nd Sh3 Domain From Human Cd2ap (Cms) In Complex With A Proline-Rich Peptide From Human Rin3 Length = 65

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          S+ R+ + ++E++ +N DEL  + GDII   + +  E GW +G L  + G FP ++V+  
Sbjct: 5  SKKRQCKVLFEYIPQNEDELELKVGDII--DINEEVEEGWWSGTLNNKLGLFPSNFVKEL 62
Query: 96 DET 98
          + T
Sbjct: 63 EVT 65

>pdb|1Z9Q|A Chain A, Solution Structure Of Sh3 Domain Of P40phox Length = 79

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R  A+++F   +  EL+F+ GD+I +  + N +  WL G +RG TG FP S+V+
Sbjct: 20 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKD--WLEGTVRGATGIFPLSFVK 71

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
          +A+++F  +   EL F+ GD I V    N++P W  G   GQTG FP +YV P +
Sbjct: 6  QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 58

>pdb|1GCQ|A Chain A, Crystal Structure Of Vav And Grb2 Sh3 Domains Length = 61

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV P
Sbjct: 4   YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 56

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
          +A+++F  +   EL F+ GD I V    N++P W  G   GQTG FP +YV P +
Sbjct: 4  QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 56

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV P
Sbjct: 5   ALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 54

>pdb|2CUB|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Cytoplasmic Protein Nck1 Length = 88

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           A V   Y A   ++LSL +G  +++ +K + GWW G         QVGWFP++YV
Sbjct: 20  AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG-----QVGWFPSNYV 69

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
          +A+++F  +   EL F+ GD I V    N++P W  G   GQTG FP +YV P +
Sbjct: 6  QALFDFDPQEDGELGFRRGDFIHV--MDNSDPNWWKGACHGQTGMFPRNYVTPVN 58

>pdb|1IO6|A Chain A, Growth Factor Receptor-Bound Protein 2 (Grb2) C-Terminal Sh3 Domain Complexed With A Ligand Peptide (Nmr, Minimized Mean Structure) Length = 59

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV P
Sbjct: 4   YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 56

>pdb|2A28|A Chain A, Atomic-Resolution Crystal Structure Of The Second Sh3 Domain Of Yeast Bzz1 Determined From A Pseudomerohedrally Twinned Crystal Length = 54

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           AIY + ++  DE+S  PGDII V ++ +   GW  GE  G  G FP SY +
Sbjct: 4  EAIYAYEAQGDDEISIDPGDIITV-IRGDDGSGWTYGECDGLKGLFPTSYCK 54

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + I+ + ++N DEL+ + GDI+ +  K   + GW  GEL G+ G FP+++V+
Sbjct: 6  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 57

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 8   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 57

>pdb|1ARK|A Chain A, Sh3 Domain From Human Nebulin, Nmr, 15 Structures Length = 60

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 37/57 (64%), Gaps = 4/57 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
          +RA+Y++++ + DE+SF+ GD I+    Q  + GW+ G ++  G+TG  P +YVE  
Sbjct: 6  FRAMYDYMAADADEVSFKDGDAIINV--QAIDEGWMYGTVQRTGRTGMLPANYVEAI 60

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + I+ + ++N DEL+ + GDI+ +  K   + GW  GEL G+ G FP+++V+
Sbjct: 7  KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 58

>pdb|2LJ0|A Chain A, The Third Sh3 Domain Of R85fl Length = 65

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          Y+A+Y ++ +N DEL  + GDI  V V +  + GW  G  R   Q G FP +YV+P
Sbjct: 9  YQALYSYIPQNDDELELRDGDI--VDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62

>pdb|2LJ1|A Chain A, The Third Sh3 Domain Of R85fl With Ataxin-7 Prr Length = 64

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          Y+A+Y ++ +N DEL  + GDI  V V +  + GW  G  R   Q G FP +YV+P
Sbjct: 9  YQALYSYIPQNDDELELRDGDI--VDVMEKCDDGWFVGTSRRTKQFGTFPGNYVKP 62

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + I+ + ++N DEL+ + GDI+ +  K   + GW  GEL G+ G FP+++V+
Sbjct: 13 KVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVK 64

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 10  ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 59

>pdb|4GLM|A Chain A, Crystal Structure Of The Sh3 Domain Of Dnmbp Protein [homo Sapiens] Length = 72

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          A+Y F +   +EL F+ GD I +      E GWL G L+G+TG FP  +V+ C
Sbjct: 18 ALYRFQALEPNELDFEVGDKIRI--LATLEDGWLEGSLKGRTGIFPYRFVKLC 68

>pdb|2JS0|A Chain A, Solution Structure Of Second Sh3 Domain Of Adaptor Nck Length = 61

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           A V   Y A   ++LSL +G  +++ +K + GWW G         QVGWFP++YV
Sbjct: 7   AYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNG-----QVGWFPSNYV 56

>pdb|2FEI|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Cms Protein Length = 65

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R+ + ++E++ +N DEL  + GDII   + +  E GW +G L  + G FP ++V+
Sbjct: 2  RQCKVLFEYIPQNEDELELKVGDII--DINEEVEEGWWSGTLNNKLGLFPSNFVK 54

>pdb|4F14|A Chain A, Structure Of The Sh3 Domain Of Human Nebulette In Complex With A Peptide Of Xirp2 Length = 64

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/64 (35%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAGELR--GQTGWFPE 89
          ++  R YRA+Y++ +++ DE+SF+ GD I+     N +P   GW+ G ++  G+TG  P 
Sbjct: 3  MANLRTYRAMYDYSAQDEDEVSFRDGDYIV-----NVQPIDDGWMYGTVQRTGRTGMLPA 57
Query: 90 SYVE 93
          +Y+E
Sbjct: 58 NYIE 61

>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound With A Synthetic Peptide Length = 70

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+Y + ++  + L+F   D+I V  +Q+    W  GE++GQ GWFP+SYV+
Sbjct: 16 QALYPWRAKKDNHLNFNKNDVITVLEQQDM---WWFGEVQGQKGWFPKSYVK 64

>pdb|4IIM|A Chain A, Crystal Structure Of The Second Sh3 Domain Of Itsn1 Bound With A Synthetic Peptide Length = 70

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 30/47 (63%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
           A YP+ + +   L FN+++VI V ++++ WW G +  + G FP +YV
Sbjct: 17  ALYPWRAKKDNHLNFNKNDVITVLEQQDMWWFGEVQGQKGWFPKSYV 63

>pdb|1YNZ|A Chain A, Sh3 Domain Of Yeast Pin3 Length = 58

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 104 EYYIAAYPYDSTEPGDLTFNQ-DEVIYVTKKENDWWTGTIGDRTGLFPSNYVVP 156
           EY  A Y +D  + GDL     D+V  + K   +W+ G+   RTG+FP+NYV P
Sbjct: 3   EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 7   ALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 56

>pdb|2FRW|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Adaptor Protein Nck2 Length = 57

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           A V   Y A   ++LSL +G  + + +K + GWW G         Q+GWFP++YV
Sbjct: 3   AFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNG-----QIGWFPSNYV 52

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTK-KENDWWTGTIGDRTGLFPSNYV 154
           + A Y ++   P +L   + ++IY+T   + +WW GT   RTGL PSNYV
Sbjct: 17  FRALYTFEPRTPDELYIEEGDIIYITDXSDTNWWKGTSKGRTGLIPSNYV 66

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 93
          R RA+Y++  +  DELSF+ GD  +  + +  E GW  G L  GQ G +P +YVE
Sbjct: 5  RVRALYDYDGQEQDELSFKAGD-ELTKLGEEDEQGWCRGRLDSGQLGLYPANYVE 58

>pdb|2KRM|A Chain A, Rdc Refined Solution Structure Of The First Sh3 Domain Of Cd2ap Length = 57

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          Y   Y++ + + DEL+ + G+II   VK+  E GWL GEL G+ G FP+++V+
Sbjct: 3  YIVEYDYDAVHDDELTIRVGEIIR-NVKKLQEEGWLEGELNGRRGMFPDNFVK 54

>pdb|2DL4|A Chain A, Solution Structure Of The First Sh3 Domain Of Stac Protein Length = 68

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           Y+A Y +   E  DL     ++I + +  N DWW G I DR G FP+N+V
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFV 59

>pdb|1WI7|A Chain A, Solution Structure Of The Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 Length = 68

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          S  RR +  + ++ +N DEL  + GDII   V    E GW  G L G+TG FP ++++
Sbjct: 5  SSGRRCQVAFSYLPQNDDELELKVGDII--EVVGEVEEGWWEGVLNGKTGMFPSNFIK 60

>pdb|2J6F|A Chain A, N-Terminal Sh3 Domain Of Cms (Cd2ap Human Homolog) Bound To Cbl-B Peptide Length = 62

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          Y   Y++ + + DEL+ + G+II   VK+  E GWL GEL G+ G FP+++V+
Sbjct: 4  YIVEYDYDAVHDDELTIRVGEIIR-NVKKLQEEGWLEGELNGRRGMFPDNFVK 55

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +A+Y+F   N  EL F+ GD+I +      +  W  G L GQ+G+FP SYV+
Sbjct: 17 KALYDFEPENDGELGFREGDLITL--TNQIDENWYEGXLHGQSGFFPLSYVQ 66

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          RA+Y+F   N  EL F+ GDII   +    +  W  G L G +G+FP +YVE
Sbjct: 11 RALYDFEPENEGELGFKEGDIIT--LTNQIDENWYEGMLHGHSGFFPINYVE 60

>pdb|2VWF|A Chain A, Grb2 Sh3c (2) Length = 58

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           P Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV
Sbjct: 2   PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYV 54

>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 95  CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
            DETG+   E  +A Y Y    PG++T  + +++ +    N DWW   + DR G  P+ Y
Sbjct: 1   MDETGK---ELVLALYDYQEKSPGEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 57
Query: 154 V 154
           V
Sbjct: 58  V 58

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 43 AIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          A Y+F +   DELSF+ GDI+ V + +  +  W   EL G+ G+ P++Y+E
Sbjct: 14 AKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIE 63

>pdb|2EW3|A Chain A, Solution Structure Of The Sh3 Domain Of Human Sh3gl3 Length = 68

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R +Y+F   N  EL F+ GDII +      +  W  G + G++G+FP +YVE
Sbjct: 7  RGLYDFEPENQGELGFKEGDIITL--TNQIDENWYEGMIHGESGFFPINYVE 56

>pdb|1WXU|A Chain A, Solution Structure Of The Sh3 Domain Of Mouse Peroxisomal Biogenesis Factor 13 Length = 93

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 5/65 (7%)
Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAGELRGQ-TGWFP 88
          +G  ++   RA Y+FV+ + +E+SF+ GD++ + +K+  +P   GWL   L GQ TG  P
Sbjct: 12 SGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQ-QPKVRGWLLASLDGQTTGLIP 70
Query: 89 ESYVE 93
           +YV+
Sbjct: 71 ANYVK 75

>pdb|2K3B|A Chain A, Seeing The Invisible: Structures Of Excited Protein States By Relaxation Dispersion Nmr Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 108 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 154
           A Y YD+ E  +LTF   D++I +   ++DWW G +      GLFPSNYV
Sbjct: 9   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 58

>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1 Gtpase- Activating Protein Length = 76

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---TGWFPESYV 92
          ++ RR + IY+  + N DEL+F  G++I+V  +++ E  W  G + GQ    G FP S+V
Sbjct: 8  NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQE--WWIGHIEGQPERKGVFPVSFV 65
Query: 93 EPCDETG 99
              ++G
Sbjct: 66 HILSDSG 72

>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein Arginine N-Methyltransferase 2 Length = 68

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G   E    +A Y AT   QLS  RG+ I+I ++TT  WW GE     +    G+ PA++
Sbjct: 4   GSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGE-----RAGCCGYIPANH 58
Query: 275 VKVMGG 280
           V    G
Sbjct: 59  VGKHSG 64

>pdb|2RPN|A Chain A, A Crucial Role For High Intrinsic Specificity In The Function Of Yeast Sh3 Domains Length = 59

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 108 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 154
           A Y YD+ E  +LTF   D++I +   ++DWW G +      GLFPSNYV
Sbjct: 6   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 55

>pdb|1JO8|A Chain A, Structural Analysis Of The Yeast Actin Binding Protein Abp1 Sh3 Domain Length = 58

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 108 AAYPYDSTEPGDLTF-NQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYV 154
           A Y YD+ E  +LTF   D++I +   ++DWW G +      GLFPSNYV
Sbjct: 5   AEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>pdb|1QKW|A Chain A, Alpha-Spectrin Src Homology 3 Domain, N47g Mutant In The Distal Loop Length = 62

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 96  DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           DETG+   E  +A Y Y    P ++T  + +++ +    N DWW   +GDR G  P+ YV
Sbjct: 2   DETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVGDRQGFVPAAYV 58

>pdb|2NWM|A Chain A, Solution Structure Of The First Sh3 Domain Of Human Vinexin And Its Interaction With The Peptides From Vinculin Length = 65

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          R  ++F +++  EL+ Q GDI+ +   +  +  WL GE  G+ G FP +YVE
Sbjct: 5  RLKFDFQAQSPKELTLQKGDIVYI--HKEVDKNWLEGEHHGRLGIFPANYVE 54

>pdb|2E5K|A Chain A, Solution Structure Of Sh3 Domain In Suppressor Of T-Cell Receptor Signaling 1 Length = 94

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGD-IIMVPVKQNA-EPGWLAGE--LRGQTGWFPESY 91
          + +   + IY +  +N DEL   PGD I M P++Q +   GW+ G     G +G  PE+Y
Sbjct: 14 ANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENY 73
Query: 92 VEPCDET 98
          +   DE 
Sbjct: 74 ITKADEC 80

>pdb|1X6B|A Chain A, Solution Structures Of The Sh3 Domain Of Human Rho Guanine Exchange Factor (Gef) 16 Length = 79

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Query: 47 FVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LR-GQTGWFPESY 91
          F ++  DE++ Q  D+++V      E GWL GE LR G+TGWFPE +
Sbjct: 26 FFAKQADEVTLQQADVVLVL---QQEDGWLYGERLRDGETGWFPEDF 69

>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled Sh3- Domain Of Alpha-Chicken Spectrin Length = 83

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95  CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
            DETG+   E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ Y
Sbjct: 12  SDETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 68
Query: 154 V 154
           V
Sbjct: 69  V 69

>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 95  CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
            DETG+   E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ Y
Sbjct: 1   MDETGK---ELVLALYDYQEKSPAEVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAY 57
Query: 154 V 154
           V
Sbjct: 58  V 58

>pdb|4HXJ|A Chain A, Crystal Structure Of Sh3:rgt Complex Length = 60

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
          + A+Y++ SR   +LSF+ G+ + + V       WLA  L  GQTG+ P +YV P D
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Query: 95  CDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNY 153
            DETG+   E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P++Y
Sbjct: 1   MDETGK---ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPASY 57
Query: 154 V 154
           V
Sbjct: 58  V 58

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           A Y +++ E  +LTF   E+I V    + +WW G     TGLFPSN+V
Sbjct: 10  ALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57

>pdb|4E6R|A Chain A, Crystal Structure Of A Cytoplasmic Protein Nck2 (Nck2) From Homo Sapiens At 2.20 A Resolution Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           A V   Y A   ++LSL  G  + + +  + GWW G         Q+GWFP++YV
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVXEXCSDGWWRGSYNG-----QIGWFPSNYV 53

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 40.8 bits (94), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
              L  YTA  S++L++ RG +I +  K    WW G +     K Q G+FPA++V
Sbjct: 9   VVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSI----GKGQEGYFPANHV 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	290
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	2e-35
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	5e-22
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	6e-15
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	4e-13
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	4e-34
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	4e-24
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	1e-10
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-24
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	8e-20
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	1e-24
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	9e-22
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	3e-23
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	4e-16
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	9e-11
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-23
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	7e-16
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-10
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	7e-23
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	1e-17
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	3e-09
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-22
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	1e-16
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	1e-08
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	2e-22
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	9e-17
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	9e-10
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-21
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	7e-11
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-10
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	2e-21
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	1e-13
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	7e-10
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-21
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-13
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-13
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	2e-21
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	2e-16
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	1e-09
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	3e-21
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	1e-14
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	4e-10
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	7e-21
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	8e-17
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	5e-11
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	1e-20
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	2e-16
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	1e-12
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	3e-20
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	4e-18
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	2e-11
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	4e-20
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-18
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-11
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	5e-20
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	6e-18
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	7e-12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	5e-20
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	5e-15
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	8e-11
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-19
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-16
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	1e-10
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-19
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	1e-15
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	9e-13
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-19
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	3e-16
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-11
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	3e-19
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	2e-16
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	8e-12
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	4e-19
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	8e-16
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-12
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	5e-19
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	1e-16
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	5e-11
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-19
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-15
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-11
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	7e-19
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	2e-15
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	4e-11
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	9e-19
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	1e-16
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	6e-12
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	9e-19
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	1e-14
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	5e-09
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	1e-18
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	9e-15
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	7e-11
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-18
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	7e-18
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	1e-11
3u23_A	65	CD2-associated protein; structural genomics, struc	2e-18
3u23_A	65	CD2-associated protein; structural genomics, struc	2e-16
3u23_A	65	CD2-associated protein; structural genomics, struc	3e-11
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	2e-18
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	5e-18
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	1e-11
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	3e-18
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	3e-10
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	2e-08
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	3e-18
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	4e-17
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	2e-10
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	3e-18
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-15
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	2e-11
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	4e-18
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-10
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	2e-08
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	4e-18
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	3e-16
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	2e-09
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	4e-18
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	1e-16
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	4e-11
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	5e-18
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	1e-17
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	2e-10
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	5e-18
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	2e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	4e-12
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	5e-18
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-11
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-10
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	7e-18
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	7e-17
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	1e-12
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	7e-18
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-16
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	8e-12
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	7e-18
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	8e-17
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	2e-10
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	7e-18
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	2e-16
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	2e-11
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	7e-18
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	7e-16
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	2e-09
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	8e-18
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	2e-16
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	8e-12
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	8e-18
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	4e-15
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-12
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	8e-18
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	4e-16
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	2e-11
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	9e-18
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	3e-17
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	6e-11
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	9e-18
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	1e-17
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	1e-09
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-17
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	4e-11
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-09
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	1e-17
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	8e-17
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	1e-12
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	1e-17
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	3e-17
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	2e-10
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	1e-17
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	3e-16
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	2e-09
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	1e-17
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	2e-15
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	2e-10
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	2e-17
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	3e-10
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	4e-07
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	2e-17
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-15
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-10
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-17
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	9e-11
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-10
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-17
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	3e-17
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	2e-11
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	3e-17
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	8e-16
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	3e-09
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	3e-17
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	2e-16
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	4e-11
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	3e-17
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	7e-16
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	2e-11
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	3e-17
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-15
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	2e-11
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	4e-17
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	7e-17
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	4e-11
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	5e-17
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	4e-14
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	2e-11
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	5e-17
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	5e-16
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	3e-12
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	6e-17
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	4e-15
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	7e-11
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	6e-17
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	4e-16
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	4e-09
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	7e-17
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-15
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	2e-11
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	7e-17
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	3e-16
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	3e-10
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	8e-17
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	5e-16
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	7e-11
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	8e-17
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	2e-09
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	7e-07
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	1e-16
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	2e-15
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	6e-11
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	1e-16
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	7e-11
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	5e-08
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	1e-16
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	4e-12
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	1e-09
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	1e-16
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	6e-09
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	1e-07
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	1e-16
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	4e-16
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	2e-11
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-16
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	8e-16
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	1e-10
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-16
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	5e-14
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-09
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	1e-16
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	2e-15
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	1e-11
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	2e-16
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	1e-12
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	8e-12
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	2e-16
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	2e-15
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	7e-10
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-16
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-16
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	3e-09
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	2e-16
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	3e-13
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	4e-09
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	2e-16
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	3e-07
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	3e-07
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-16
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-12
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	8e-07
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-16
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	1e-15
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	4e-12
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	2e-16
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	4e-14
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	2e-07
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-16
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-13
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	3e-11
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	3e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	4e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-11
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	4e-16
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	6e-09
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	1e-08
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	4e-16
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	1e-14
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	1e-09
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	5e-16
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	3e-13
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	5e-10
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	5e-16
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	2e-15
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	8e-09
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	5e-16
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	2e-12
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	3e-06
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	5e-16
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	3e-14
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	4e-10
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	7e-16
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	4e-15
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	7e-10
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	7e-16
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	9e-15
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	6e-12
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	8e-16
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	9e-16
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	1e-09
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	1e-15
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-13
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	2e-12
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-15
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	5e-11
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-09
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	1e-15
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	2e-11
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	1e-09
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	1e-15
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	5e-10
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	2e-08
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	1e-15
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	1e-13
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	4e-10
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-15
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	3e-14
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	1e-09
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	2e-15
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	9e-14
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	4e-11
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-15
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	1e-14
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-11
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	3e-15
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	3e-15
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	7e-09
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	3e-15
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	2e-12
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	2e-11
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	4e-15
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	2e-13
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	3e-10
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	4e-15
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	3e-12
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	1e-05
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	4e-15
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	6e-14
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	1e-10
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	4e-15
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	2e-13
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	1e-11
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	4e-15
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	9e-13
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	3e-10
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	5e-15
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	9e-13
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	4e-10
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	5e-15
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	4e-14
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	1e-13
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	5e-15
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	9e-13
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	4e-12
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	6e-15
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	9e-13
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	2e-09
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	6e-15
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	2e-11
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	2e-11
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	7e-15
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	4e-14
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	3e-10
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	9e-15
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	4e-14
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	5e-10
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	9e-15
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	4e-13
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	7e-13
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	1e-14
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	4e-14
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	3e-10
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	1e-14
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	4e-13
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	3e-10
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	1e-14
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	3e-14
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	9e-10
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	1e-14
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	3e-13
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	2e-08
1wxb_A	68	Epidermal growth factor receptor pathway substrate	2e-14
1wxb_A	68	Epidermal growth factor receptor pathway substrate	1e-13
1wxb_A	68	Epidermal growth factor receptor pathway substrate	1e-07
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	2e-14
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-13
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	8e-11
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	2e-14
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	4e-13
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	3e-11
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	2e-14
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	4e-13
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	6e-09
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-14
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	3e-13
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-12
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-14
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-11
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	3e-08
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	2e-14
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	1e-10
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	3e-06
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	2e-14
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	2e-13
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	9e-09
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	4e-14
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	9e-14
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	1e-08
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	5e-14
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	1e-12
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	2e-07
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	5e-14
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	3e-05
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	7e-04
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	5e-14
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	3e-12
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	5e-06
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	7e-14
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	2e-09
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	4e-08
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	8e-14
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	1e-09
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	9e-08
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	1e-13
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	2e-10
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	4e-08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	1e-13
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	1e-06
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	1e-06
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	1e-13
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	8e-13
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	9e-07
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	1e-13
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	7e-13
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	3e-11
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	2e-13
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	3e-12
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	2e-09
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	2e-13
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	3e-09
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	8e-07
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	3e-13
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	4e-12
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	6e-08
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	3e-13
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	4e-13
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	1e-09
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	3e-13
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	3e-11
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	3e-08
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	5e-13
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	8e-11
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	7e-08
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	6e-13
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	2e-12
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	3e-06
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	7e-13
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	2e-10
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	1e-09
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	7e-13
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	4e-10
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	8e-06
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	9e-13
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	9e-10
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	3e-06
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-12
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	5e-12
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	3e-05
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	2e-12
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	3e-09
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-05
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	2e-12
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	8e-11
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	4e-10
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	3e-12
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	7e-11
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-06
1i07_A	60	Epidermal growth factor receptor kinase substrate	3e-12
1i07_A	60	Epidermal growth factor receptor kinase substrate	6e-10
1i07_A	60	Epidermal growth factor receptor kinase substrate	7e-07
1awj_A	77	ITK; transferase, regulatory intramolecular comple	4e-12
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-10
1awj_A	77	ITK; transferase, regulatory intramolecular comple	1e-08
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	5e-12
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	8e-11
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	2e-08
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	5e-12
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	4e-11
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	2e-09
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	6e-12
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	4e-10
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	6e-07
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	6e-12
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	1e-11
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	1e-11
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	7e-12
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	2e-11
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	1e-09
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	9e-12
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	2e-10
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	1e-09
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	2e-11
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	2e-10
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	1e-08
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	3e-11
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	2e-09
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	2e-07
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	3e-11
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-10
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	2e-09
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	4e-11
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	2e-08
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	5e-08
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	4e-11
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	6e-11
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	1e-07
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	7e-11
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	3e-09
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	7e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	4e-10
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	1e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-06
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	8e-10
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	1e-08
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	5e-06
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	1e-09
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	3e-06
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	1e-09
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	5e-08
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	6e-08
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	2e-09
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	1e-08
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	9e-07
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	4e-09
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	1e-06
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	8e-06
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	6e-09
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	4e-08
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	2e-06
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	5e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-06
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	6e-08
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	8e-04
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-07
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-07
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-06
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	5e-07
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	1e-06
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	8e-07
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-06
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-04
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	9e-07
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	2e-06
1u3o_A	82	Huntingtin-associated protein-interacting protein;	8e-05

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score =  125 bits (315), Expect = 2e-35
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
              + YRAI ++   +G E++   GD++ V  K   E GW   +++ + GW P S++EP 
Sbjct: 9   IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIPASFLEPL 66

Query: 96  DETGEVVP-------EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTG 147
           D   E          E Y+A   Y + E  +++  + E + V  K  + WW     D TG
Sbjct: 67  DSPDETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTG 126

Query: 148 LFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSS 190
            FPS Y+         A        P  + +   +  + + S 
Sbjct: 127 YFPSMYLQKSGQDVSQAQRQIKRGAPPRRSSIRNAHSIHQRSR 169

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 90.0 bits (223), Expect = 5e-22
 Identities = 31/190 (16%), Positives = 64/190 (33%), Gaps = 52/190 (27%)

Query: 101 VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 159
           ++ + Y A   Y+ T   ++  +  +V+ V +K E+ WW   +  + G  P++++ P ++
Sbjct: 9   IILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDS 68

Query: 160 QTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPE 219
                  +P                                                  E
Sbjct: 69  PDETEDPEPNY----------------------------------------------AGE 82

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
               +  YTA   +++SL  G+ + +  K   GWW             G+FP+ Y++  G
Sbjct: 83  PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDV-----TGYFPSMYLQKSG 137

Query: 280 GGGISIQKYL 289
                 Q+ +
Sbjct: 138 QDVSQAQRQI 147

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 70.8 bits (173), Expect = 6e-15
 Identities = 20/69 (28%), Positives = 40/69 (57%), Gaps = 5/69 (7%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGW 269
            G+P+    +    +A Y  TS  +++LS G ++ + +K+ +GWW  +++AK      GW
Sbjct: 3   LGSPEFIILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAK-----RGW 57

Query: 270 FPASYVKVM 278
            PAS+++ +
Sbjct: 58  IPASFLEPL 66

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 65.8 bits (160), Expect = 4e-13
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 27  TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
             + DP        Y AI  + +  GDE+S   G+ +   V      GW        TG+
Sbjct: 70  DETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVE--VIHKLLDGWWVIRKDDVTGY 127

Query: 87  FPESYVEPCDET 98
           FP  Y++   + 
Sbjct: 128 FPSMYLQKSGQD 139

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score =  125 bits (314), Expect = 4e-34
 Identities = 45/252 (17%), Positives = 81/252 (32%), Gaps = 41/252 (16%)

Query: 45  YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP-------------ESY 91
           Y    R  DE +     +I     +  E G  A  ++     FP              + 
Sbjct: 78  YSLTVREADEGNAVCHYLI--ERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTE 135

Query: 92  VEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLF 149
                   + + E  +  + +      DL F Q E + +  K   DWW        TGL 
Sbjct: 136 ASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLV 195

Query: 150 PSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQ 209
           P+NYV                                  SS+           S+ T++ 
Sbjct: 196 PANYVQIQMEFHNDRTSKGAS-----------------QSSIGSSGGGAERFSSASTSSD 238

Query: 210 AGTPKGKKPEIATVLAPYTATSSE--QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQV 267
               + + P  A V       + +  QL + +GQ +++ +K + G ++ EL  +     +
Sbjct: 239 NIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQ-----I 293

Query: 268 GWFPASYVKVMG 279
           G  P +Y++   
Sbjct: 294 GSVPHTYLRFTA 305

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 98.4 bits (244), Expect = 4e-24
 Identities = 21/162 (12%), Positives = 46/162 (28%), Gaps = 40/162 (24%)

Query: 32  PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
                        ++F      +L F+ G+ + + + +  +  W A    G TG  P +Y
Sbjct: 141 AYKKPIIEVVVGTFKFTGERETDLPFEQGERLEI-LSKTNQDWWEARNALGTTGLVPANY 199

Query: 92  VEPCDETGEVVPEY--------------------------------------YIAAYPYD 113
           V+   E                                                     +
Sbjct: 200 VQIQMEFHNDRTSKGASQSSIGSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPN 259

Query: 114 STEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           + +P  L   + + + VT+K ++  +   +  + G  P  Y+
Sbjct: 260 AYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYL 301

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 59.8 bits (144), Expect = 1e-10
 Identities = 27/177 (15%), Positives = 44/177 (24%), Gaps = 55/177 (31%)

Query: 113 DSTEPGD--LTFNQDEVIYVTK---------KENDWWTGTIGDRTGLFPSNYVVPYEAQT 161
           DS+ PG+  LT  + +               KE+      +      FP    +    + 
Sbjct: 71  DSSRPGEYSLTVREADEGNAVCHYLIERGEPKEDGTAAAGVKIANQSFPDIPALLNHFKM 130

Query: 162 PAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIA 221
                                                        A+     K    E+ 
Sbjct: 131 ----------------------------------------RVLTEASLLAAYKKPIIEVV 150

Query: 222 TVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
                +T      L   +G+ + I  KT   WWE            G  PA+YV++ 
Sbjct: 151 VGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARN----ALGTTGLVPANYVQIQ 203

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 55.2 bits (132), Expect = 5e-09
 Identities = 14/89 (15%), Positives = 31/89 (34%), Gaps = 3/89 (3%)

Query: 11  SWGDNAWDNAPAADTWTASTDPT-GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ 69
                  +   +A T + + +    +    +        + +  +L  + G  ++V  K 
Sbjct: 221 GSSGGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKM 280

Query: 70  NAEPGWLAGELRGQTGWFPESYVEPCDET 98
           +   G    EL GQ G  P +Y+     +
Sbjct: 281 S--NGMYKAELDGQIGSVPHTYLRFTAVS 307

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score =  100 bits (248), Expect = 1e-24
 Identities = 45/250 (18%), Positives = 77/250 (30%), Gaps = 17/250 (6%)

Query: 34  GVSEYRRYRA---IYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPES 90
            VS Y         ++   +  D L      ++        +   L             S
Sbjct: 57  RVSHYIINSLPNRRFKIGDQEFDHL----PALLEFYKIHYLDTTTLIEPAPRYPSPPMGS 112

Query: 91  YVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGL 148
              P   T E   EY    Y +   +  DL F + E++ + +K E  WW+    D R G+
Sbjct: 113 VSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGM 172

Query: 149 FPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAA 208
            P  YV   E    ++                +          +    + +    +    
Sbjct: 173 IPVPYV---EKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITP 229

Query: 209 QAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVG 268
              T  G     A       A     L+L  G ++ + +    G WEGE+  +      G
Sbjct: 230 LPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR-----KG 284

Query: 269 WFPASYVKVM 278
            FP ++VK+ 
Sbjct: 285 LFPFTHVKIF 294

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 86.6 bits (213), Expect = 8e-20
 Identities = 34/188 (18%), Positives = 60/188 (31%), Gaps = 52/188 (27%)

Query: 26  WTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
            +A   PT        R +Y+F   + ++L F+ G+I+++ +++  E  W A    G+ G
Sbjct: 113 VSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVI-IEKPEEQWWSARNKDGRVG 171

Query: 86  WFPESYVEPCDETGEVVPEYY--------------------------------------- 106
             P  YVE    +                                               
Sbjct: 172 MIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPAHAYAQPQTTTPLPAVSGSPGAAITPLP 231

Query: 107 -----------IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
                      I      + +   L     +++ VT+   N  W G +  R GLFP  +V
Sbjct: 232 STQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHV 291

Query: 155 VPYEAQTP 162
             ++ Q P
Sbjct: 292 KIFDPQNP 299

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 99.7 bits (247), Expect = 1e-24
 Identities = 36/194 (18%), Positives = 62/194 (31%), Gaps = 19/194 (9%)

Query: 87  FPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD- 144
              S         +   EY  A + ++  +  DL F + +++ +  K E  WW     + 
Sbjct: 118 VSRSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEG 177

Query: 145 RTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSS 204
           + G+ P  YV  Y   + + +             P                  G     S
Sbjct: 178 KRGMIPVPYVEKYRPASASVSALIGGNQEGSHPQPLGG------------PEPGPYAQPS 225

Query: 205 FTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKK 264
                     G             A     L+L  G+L+ + K   +G WEGE   K   
Sbjct: 226 VNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGK--- 282

Query: 265 RQVGWFPASYVKVM 278
              G FP ++V+++
Sbjct: 283 --RGHFPFTHVRLL 294

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 92.0 bits (227), Expect = 9e-22
 Identities = 32/173 (18%), Positives = 54/173 (31%), Gaps = 43/173 (24%)

Query: 32  PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
                E    RA+++F   + ++L F+ GDI+ +  K   +  W A +  G+ G  P  Y
Sbjct: 128 ILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQW-WNAEDSEGKRGMIPVPY 186

Query: 92  VEP-----------------------------------------CDETGEVVPEYYIAAY 110
           VE                                           +     +    I   
Sbjct: 187 VEKYRPASASVSALIGGNQEGSHPQPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKR 246

Query: 111 PYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQTP 162
             ++ +   L     E++ VTK      W G    + G FP  +V   + Q P
Sbjct: 247 VPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHVRLLDQQNP 299

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 90.2 bits (224), Expect = 3e-23
 Identities = 32/92 (34%), Positives = 46/92 (50%), Gaps = 7/92 (7%)

Query: 81  RGQTGWFPESYVEPCDETGEVVP------EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK- 133
            GQ GWFP S+V+    + E            IA Y Y +    +L+F++ ++I V  K 
Sbjct: 6   SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKD 65

Query: 134 ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAA 165
           + DWW G I   TGLFPSNYV      +  ++
Sbjct: 66  DPDWWQGEINGVTGLFPSNYVKMTTDSSGPSS 97

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 71.3 bits (175), Expect = 4e-16
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 27  TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
           ++           +  A+Y++ + N DELSF  G +I V + ++ +P W  GE+ G TG 
Sbjct: 23  SSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINV-MNKD-DPDWWQGEINGVTGL 80

Query: 87  FPESYVEPCDETGE 100
           FP +YV+   ++  
Sbjct: 81  FPSNYVKMTTDSSG 94

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 56.7 bits (137), Expect = 9e-11
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
           +++  TP          +  Y A + ++LS S+GQLI +  K    WW+GE+        
Sbjct: 23  SSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI-----NGV 77

Query: 267 VGWFPASYVKVM 278
            G FP++YVK+ 
Sbjct: 78  TGLFPSNYVKMT 89

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 89.3 bits (222), Expect = 4e-23
 Identities = 36/62 (58%), Positives = 46/62 (74%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
            E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P ++   
Sbjct: 8   GEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDSGPS 67

Query: 163 AA 164
           + 
Sbjct: 68  SG 69

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 69.6 bits (171), Expect = 7e-16
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +G S    Y A+Y + S    +L+F  G+ I+V      +  W  G +  ++G FP +YV
Sbjct: 3  SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILV---TQKDGEWWTGSIGDRSGIFPSNYV 59

Query: 93 EPCD 96
          +P D
Sbjct: 60 KPKD 63

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 53.8 bits (130), Expect = 4e-10
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+      E    L PY++     L+ + G+ I++ +K    WW G +       + G F
Sbjct: 1   GSSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI-----GDRSGIF 54

Query: 271 PASYVKVM 278
           P++YVK  
Sbjct: 55  PSNYVKPK 62

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 89.1 bits (221), Expect = 7e-23
 Identities = 33/65 (50%), Positives = 39/65 (60%)

Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          G S    YRA+Y F +RN DE+SF  GDII V  K   EPGWL G  +G  GWFP +YVE
Sbjct: 1  GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

Query: 94 PCDET 98
              +
Sbjct: 61 KMPSS 65

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 99  GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVV 155
           G      Y A YP+++    +++FN  ++I V +K   E  W  G+     G FP NYV 
Sbjct: 1   GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

Query: 156 PYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSS 190
              +     AV P  A       PT S   T   S
Sbjct: 61  KMPSSENEKAVSPKKALL----PPTVSLSATSGPS 91

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 52.1 bits (125), Expect = 3e-09
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPAS 273
                   L P+ A + +++S + G +I + +KT    GW  G  Q        GWFP +
Sbjct: 3   SGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGN-----FGWFPCN 57

Query: 274 YVKVM 278
           YV+ M
Sbjct: 58  YVEKM 62

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 89.7 bits (222), Expect = 2e-22
 Identities = 31/137 (22%), Positives = 51/137 (37%), Gaps = 35/137 (25%)

Query: 34  GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           G   +   +A Y+F +R+  ELS + GDII + + +  + GW  GE+ G+ GWFP +YVE
Sbjct: 1   GPGTFGTAKARYDFCARDRSELSLKEGDIIKI-LNKKGQQGWWRGEIYGRIGWFPSNYVE 59

Query: 94  PCDET---------------------------------GEVVPEYYIAAYPYDSTEPGDL 120
                                                      E     Y  D+   G+ 
Sbjct: 60  EDYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEW 119

Query: 121 TFNQ-DEVIYVTKKEND 136
           T++   +   VT+   +
Sbjct: 120 TYDDATKTFTVTEHSLE 136

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 74.0 bits (181), Expect = 1e-16
 Identities = 20/101 (19%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 99  GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVP 156
           G        A Y + + +  +L+  + ++I +  K+    WW G I  R G FPSNYV  
Sbjct: 1   GPGTFGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIYGRIGWFPSNYVEE 60

Query: 157 YEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRS 197
             ++        + ++   K           T++ +  + +
Sbjct: 61  DYSEYLPETGGGSGSSMTYKLILNGKTLKGETTTEAVDAAT 101

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A     + A    +LSL  G +I I  KK   GWW GE+       ++GWFP++YV+  
Sbjct: 8   AKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY-----GRIGWFPSNYVEED 61

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 87.9 bits (218), Expect = 2e-22
 Identities = 21/65 (32%), Positives = 31/65 (47%)

Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +G S      A+  +++ N   LSF  GD+I +      EPGW  G   G++G FP   V
Sbjct: 3  SGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIV 62

Query: 93 EPCDE 97
          +P   
Sbjct: 63 QPAAA 67

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 72.9 bits (179), Expect = 9e-17
 Identities = 20/79 (25%), Positives = 36/79 (45%), Gaps = 3/79 (3%)

Query: 98  TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
           +G     Y IA   Y +     L+F++ ++I +      E  W  G+ G R+GLFP++ V
Sbjct: 3   SGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIV 62

Query: 155 VPYEAQTPAAAVDPTPATP 173
            P  A   + + +    + 
Sbjct: 63  QPAAAPDFSFSKEQRSGSG 81

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 53.6 bits (129), Expect = 9e-10
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 7/70 (10%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVG 268
           G+           L  Y   +   LS  RG LI +    T   GW  G    +      G
Sbjct: 1   GSSGSSGSGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGR-----SG 55

Query: 269 WFPASYVKVM 278
            FPA  V+  
Sbjct: 56  LFPADIVQPA 65

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 89.4 bits (221), Expect = 1e-21
 Identities = 34/216 (15%), Positives = 66/216 (30%), Gaps = 48/216 (22%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQTPA 163
            IA Y + +T   +L+F + +++ V  +E D  W+   +  + G  P NY+         
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYIEMKPHPWFF 62

Query: 164 AAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRS-------------------------- 197
             +    A  ++         + R S  + G  S                          
Sbjct: 63  GKIPRAKAEEMLSKQRHDGAFLIRESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLWV 122

Query: 198 ----GTPDFSSFTAAQAGTPKGK-----------KPEIATVLAPYTATSSEQLSLSRGQL 242
                  +   +  + + +   +           +P     L  +      +L   RG  
Sbjct: 123 VKFNSLNELVDYHRSTSVSRNQQIFLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDF 182

Query: 243 IMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           I +   +   WW+G         Q G FP +YV  +
Sbjct: 183 IHVMDNSDPNWWKGAC-----HGQTGMFPRNYVTPV 213

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 59.7 bits (144), Expect = 7e-11
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 1/68 (1%)

Query: 92  VEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFP 150
                E     P Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP
Sbjct: 147 FLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFP 206

Query: 151 SNYVVPYE 158
            NYV P  
Sbjct: 207 RNYVTPVN 214

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 58.2 bits (140), Expect = 3e-10
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 27  TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
                     +    +A+++F  +   EL F+ GD I V      +P W  G   GQTG 
Sbjct: 147 FLRDIEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNS--DPNWWKGACHGQTGM 204

Query: 87  FPESYVEPCDE 97
           FP +YV P + 
Sbjct: 205 FPRNYVTPVNR 215

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 84.6 bits (210), Expect = 2e-21
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 2/66 (3%)

Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
          S+  +G + +R+ +A+Y   + +  ELSF  G +    V  + EPGWL G L G+TG  P
Sbjct: 2  SSGSSG-TPFRKAKALYACKAEHDSELSFTAGTVFDN-VHPSQEPGWLEGTLNGKTGLIP 59

Query: 89 ESYVEP 94
          E+YVE 
Sbjct: 60 ENYVEF 65

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 2/62 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQT 161
               A Y   +    +L+F    V        +  W  GT+  +TGL P NYV      +
Sbjct: 11  RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYVEFLSGPS 70

Query: 162 PA 163
             
Sbjct: 71  SG 72

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 53.4 bits (129), Expect = 7e-10
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFP 271
             G     A  L    A    +LS + G +   +      GW EG L  K      G  P
Sbjct: 5   SSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGK-----TGLIP 59

Query: 272 ASYVKVMGG 280
            +YV+ + G
Sbjct: 60  ENYVEFLSG 68

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 84.8 bits (210), Expect = 2e-21
 Identities = 43/67 (64%), Positives = 53/67 (79%)

Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
            G   EIA V + Y A+ SEQLSL+ GQLI+I KK T+GWW+GELQA+GKKRQ GWFPAS
Sbjct: 3   SGSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPAS 62

Query: 274 YVKVMGG 280
           +VK++G 
Sbjct: 63  HVKLLGP 69

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-----TGLFPSNYVVP 156
            E       Y ++    L+    ++I + KK    WW G +  R      G FP+++V  
Sbjct: 7   GEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKL 66

Query: 157 YEAQTPAAA 165
               +  A+
Sbjct: 67  LGPSSERAS 75

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 62.8 bits (153), Expect = 3e-13
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPES 90
           S     +    +V+   ++LS  PG +I++  K     GW  GEL+      Q GWFP S
Sbjct: 5   SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKN--TSGWWQGELQARGKKRQKGWFPAS 62

Query: 91  YVEPCDETGE 100
           +V+    + E
Sbjct: 63  HVKLLGPSSE 72

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 84.2 bits (209), Expect = 2e-21
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 40  RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 99
            Y   Y++ + + DEL+ + G+II   VK+  E GWL GEL G+ G FP+++V+      
Sbjct: 3   DYIVEYDYDAVHDDELTIRVGEIIRN-VKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61

Query: 100 E 100
           E
Sbjct: 62  E 62

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 71.1 bits (175), Expect = 2e-16
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEAQT 161
            YI  Y YD+    +LT    E+I   KK  +  W  G +  R G+FP N+V   + +T
Sbjct: 3   DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELNGRRGMFPDNFVKEIKRET 61

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
             V   Y A   ++L++  G++I  ++K    GW EGEL   G+    G FP ++VK +
Sbjct: 4   YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGEL--NGR---RGMFPDNFVKEI 57

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 84.7 bits (210), Expect = 3e-21
 Identities = 20/72 (27%), Positives = 32/72 (44%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
          +   D    S  R+ R +Y++ + N  ELS    ++I V      +  WL GE   Q G 
Sbjct: 6  SGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGK 65

Query: 87 FPESYVEPCDET 98
           P +Y+E  +  
Sbjct: 66 VPITYLELLNSG 77

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 67.0 bits (164), Expect = 1e-14
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEA 159
                  Y YD+    +L+   DEVI V      ++DW  G  G++ G  P  Y+    +
Sbjct: 17  NRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNS 76

Query: 160 QTPAA 164
              + 
Sbjct: 77  GPSSG 81

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQA 260
           SS ++      +      A VL  Y A +S +LSL   ++I +         W  GE   
Sbjct: 2   SSGSSGLNDLKESSNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGER-- 59

Query: 261 KGKKRQVGWFPASYVKVMGGG 281
                Q G  P +Y++++  G
Sbjct: 60  ---GNQKGKVPITYLELLNSG 77

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 83.1 bits (206), Expect = 7e-21
 Identities = 22/65 (33%), Positives = 32/65 (49%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           S      A Y F +R+  ELS + GD++ +  +   + GW  GE  G+ GWFP +YVE  
Sbjct: 5   SSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEE 64

Query: 96  DETGE 100
                
Sbjct: 65  GIQSG 69

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 72.4 bits (178), Expect = 8e-17
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEAQ 160
              +A Y + + +  +L+  + +V+ +  +   +  WW G    R G FPS YV     Q
Sbjct: 8   GTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQ 67

Query: 161 TPAAA 165
           +  ++
Sbjct: 68  SGPSS 72

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 56.6 bits (137), Expect = 5e-11
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPA 272
           G     A     + A    +LSL  G ++ I  +     GWW+GE   +     +GWFP+
Sbjct: 4   GSSGGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGR-----IGWFPS 58

Query: 273 SYVKVMG 279
           +YV+  G
Sbjct: 59  TYVEEEG 65

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 82.8 bits (205), Expect = 1e-20
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 1/72 (1%)

Query: 29  STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
           S D    S+    + I+ + ++N DEL+ + GDI+ +  K   + GW  GEL G+ G FP
Sbjct: 1   SMDSRTKSK-DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFP 59

Query: 89  ESYVEPCDETGE 100
           +++V+      E
Sbjct: 60  DNFVKLLPPDFE 71

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 71.2 bits (175), Expect = 2e-16
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
            +Y    +PY++    +LT  + +++ +  K   +  WW G +  R G+FP N+V
Sbjct: 9   KDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 63

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 7/71 (9%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQV 267
           +   + K  +   V+ PY A + ++L++  G ++ +  K     GWWEGEL  +      
Sbjct: 1   SMDSRTKSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGR-----R 55

Query: 268 GWFPASYVKVM 278
           G FP ++VK++
Sbjct: 56  GVFPDNFVKLL 66

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 81.5 bits (202), Expect = 3e-20
 Identities = 19/60 (31%), Positives = 34/60 (56%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
             + I+ + ++N DEL+ + GDI+ +  K   + GW  GEL G+ G FP+++V+     
Sbjct: 3  DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPL 62

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 75.8 bits (187), Expect = 4e-18
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
            +Y    +PY++    +LT  + +++ +  K   +  WW G +  R G+FP N+V
Sbjct: 2   SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 56

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)

Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPASYV 275
            +   V+ PY A + ++L++  G ++ +  K     GWWEGEL  +      G FP ++V
Sbjct: 2   SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGR-----RGVFPDNFV 56

Query: 276 KVM 278
           K++
Sbjct: 57  KLL 59

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 80.7 bits (200), Expect = 4e-20
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
             R ++ +   N DEL+F+ G+II +  K+  E GW  GEL G+ G FP+++   
Sbjct: 7  EYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 76.1 bits (188), Expect = 2e-18
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVP 156
            EY    +PY  T   +LTF + E+I++  K   E  WW G +  + G+FP N+ V 
Sbjct: 6   KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQ 62

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 7/67 (10%)

Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFP 271
                E    L PYT T+ ++L+   G++I +  K T   GWW+GEL  K      G FP
Sbjct: 2   AMGAKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGK-----EGVFP 56

Query: 272 ASYVKVM 278
            ++   +
Sbjct: 57  DNFAVQI 63

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 80.7 bits (200), Expect = 5e-20
 Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPY 157
            ++  A + ++  E G+L F + +VI +  K++ +WW G + +R G+FPSNYV PY
Sbjct: 2   TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 74.9 bits (185), Expect = 6e-18
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 2/60 (3%)

Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
          E +  +A+++F  +   EL+F+ GD+I + + ++ +P W  G+L  + G FP +YV P +
Sbjct: 1  ETKFVQALFDFNPQESGELAFKRGDVITL-INKD-DPNWWEGQLNNRRGIFPSNYVCPYN 58

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 58.3 bits (142), Expect = 7e-12
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           + +    L  +    S +L+  RG +I +  K    WWEG+L       + G FP++YV 
Sbjct: 1   ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL-----NNRRGIFPSNYVC 55

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 87.7 bits (216), Expect = 5e-20
 Identities = 33/218 (15%), Positives = 63/218 (28%), Gaps = 22/218 (10%)

Query: 64  MVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFN 123
                 ++E    A           +S     +    +      A + +      +L F 
Sbjct: 135 FYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSKLELNFK 194

Query: 124 QDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKS 182
             +VI++  + N DW  GT+   TG+FP ++V                   ++KD P + 
Sbjct: 195 AGDVIFLLSRINKDWLEGTVRGATGIFPLSFV------------------KILKDFPEED 236

Query: 183 EGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQL 242
           +               T    +     + TP  K     T         +     + G L
Sbjct: 237 DPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDL 296

Query: 243 IMIRKKTTTGWWEGELQAKGKKRQVGWFP-ASYVKVMG 279
           + +           +  A+G   Q   FP   ++    
Sbjct: 297 VRLLSDEDVALMVRQ--ARGLPSQKRLFPWKLHITQKD 332

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 73.1 bits (178), Expect = 5e-15
 Identities = 26/169 (15%), Positives = 50/169 (29%), Gaps = 41/169 (24%)

Query: 26  WTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
            +   +        R  A+++F   +  EL+F+ GD+I +  + N    WL G +RG TG
Sbjct: 162 VSPQGNSVDRMAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRIN--KDWLEGTVRGATG 219

Query: 86  WFPESYVEPCDETGEV------------VPEYYIAAYPYDSTEPGDLTFNQDEVIYV--- 130
            FP S+V+   +  E                           +       +D +      
Sbjct: 220 IFPLSFVKILKDFPEEDDPTNWLRCYYYEDTISTIKDIAVEEDLSSTPLLKDLLELTRRE 279

Query: 131 ---------------------TKKENDWWTGT---IGDRTGLFPSNYVV 155
                                + ++          +  +  LFP    +
Sbjct: 280 FQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHI 328

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 60.8 bits (146), Expect = 8e-11
 Identities = 19/106 (17%), Positives = 36/106 (33%), Gaps = 5/106 (4%)

Query: 173 PVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSS 232
             V+    +S   +     +              + Q  +        A  L  +T  S 
Sbjct: 129 EDVRIFFYQSPYDSEQVPQALRRLRPRTRKVKSVSPQGNSVDRMAAPRAEALFDFTGNSK 188

Query: 233 EQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
            +L+   G +I +  +    W EG +     +   G FP S+VK++
Sbjct: 189 LELNFKAGDVIFLLSRINKDWLEGTV-----RGATGIFPLSFVKIL 229

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 79.5 bits (197), Expect = 1e-19
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
            EY  A Y +D  + GDL     + + + +K + +W+ G+   RTG+FP+NYV P
Sbjct: 2   MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGRTGIFPANYVKP 56

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 71.4 bits (176), Expect = 1e-16
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
              A+Y+F  +   +L  +PGD + + +++   P W  G   G+TG FP +YV+P 
Sbjct: 3  EYVEALYQFDPQQDGDLGLKPGDKVQL-LEKL-SPEWYKGSCNGRTGIFPANYVKPA 57

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 55.2 bits (134), Expect = 1e-10
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
            E    L  +       L L  G  + + +K +  W++G    +      G FPA+YVK
Sbjct: 2   MEYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCNGR-----TGIFPANYVK 55

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 80.0 bits (198), Expect = 1e-19
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)

Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +G S  + YRA+Y++ ++N DEL    GDI+ V + +  E GW   E  GQ G+ P SY+
Sbjct: 3  SGSSGAQEYRALYDYTAQNPDELDLSAGDILEV-ILEG-EDGWWTVERNGQRGFVPGSYL 60

Query: 93 EPCDE 97
          E    
Sbjct: 61 EKLSG 65

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 69.2 bits (170), Expect = 1e-15
 Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 98  TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 156
           +G    + Y A Y Y +  P +L  +  +++ V  + E+ WWT     + G  P +Y+  
Sbjct: 3   SGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQRGFVPGSYLEK 62

Query: 157 YEAQTPA 163
               +  
Sbjct: 63  LSGPSSG 69

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 61.5 bits (150), Expect = 9e-13
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 5/70 (7%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+      +    L  YTA + ++L LS G ++ +  +   GWW  E   +      G+ 
Sbjct: 1   GSSGSSGAQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERNGQ-----RGFV 55

Query: 271 PASYVKVMGG 280
           P SY++ + G
Sbjct: 56  PGSYLEKLSG 65

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 79.1 bits (196), Expect = 2e-19
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
           P Y  A + +D  E G+L F + + I+V    + +WW G    +TG+FP NYV  
Sbjct: 2   PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTA 56

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 70.3 bits (173), Expect = 3e-16
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
          +A+++F  +   EL F+ GD I V +  + +P W  G   GQTG FP +YV   +
Sbjct: 6  QALFDFDPQEDGELGFRRGDFIHV-MDNS-DPNWWKGACHGQTGMFPRNYVTAVN 58

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           P     L  +      +L   RG  I +   +   WW+G         Q G FP +YV  
Sbjct: 2   PTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-----HGQTGMFPRNYVTA 56

Query: 278 M 278
           +
Sbjct: 57  V 57

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 79.4 bits (196), Expect = 3e-19
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 28  ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
             T+  G    RR +  + ++ +N DEL  + GDII V V +  E GW  G L G+TG F
Sbjct: 8   MGTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEV-VGEV-EEGWWEGVLNGKTGMF 65

Query: 88  PESYVEPCDETGEVVPE 104
           P ++++      + +  
Sbjct: 66  PSNFIKELSGESDELGI 82

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 72.1 bits (177), Expect = 2e-16
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 94  PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSN 152
             ++ GE        A+ Y      +L     ++I V  +  + WW G +  +TG+FPSN
Sbjct: 9   GTNKRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSN 68

Query: 153 YVVPYEAQTPAAAV 166
           ++     ++    +
Sbjct: 69  FIKELSGESDELGI 82

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 59.4 bits (144), Expect = 8e-12
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 16/89 (17%)

Query: 190 SVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT 249
           S++GG + GT                ++     V   Y   + ++L L  G +I +  + 
Sbjct: 1   SMTGGQQMGTN-----------KRGERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEV 49

Query: 250 TTGWWEGELQAKGKKRQVGWFPASYVKVM 278
             GWWEG L       + G FP++++K +
Sbjct: 50  EEGWWEGVL-----NGKTGMFPSNFIKEL 73

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 78.5 bits (194), Expect = 4e-19
 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 3/76 (3%)

Query: 28  ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
            S+  +G S     +A + F   N DELS   GDII V   +  E GW  G L G+TGWF
Sbjct: 1   GSSGSSG-SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVE--EGGWWEGTLNGRTGWF 57

Query: 88  PESYVEPCDETGEVVP 103
           P +YV     +    P
Sbjct: 58  PSNYVREIKSSERSGP 73

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 69.6 bits (171), Expect = 8e-16
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQT 161
                A + +  T   +L+  + ++IYVT+  E  WW GT+  RTG FPSNYV   ++  
Sbjct: 10  QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE 69

Query: 162 PAA 164
            + 
Sbjct: 70  RSG 72

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 5/67 (7%)

Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFP 271
              G    I      +  T+ ++LS+ +G +I + +    GWWEG L  +      GWFP
Sbjct: 4   GSSGSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGR-----TGWFP 58

Query: 272 ASYVKVM 278
           ++YV+ +
Sbjct: 59  SNYVREI 65

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 78.5 bits (194), Expect = 5e-19
 Identities = 19/57 (33%), Positives = 34/57 (59%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
             + I+ + ++N DEL+ + GDI+ +  K   + GW  GEL G+ G FP+++V+  
Sbjct: 8  DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLL 64

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 3/55 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
            +Y    +PY++    +LT  + +++ +  K   +  WW G +  R G+FP N+V
Sbjct: 7   GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFV 61

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 56.5 bits (137), Expect = 5e-11
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 7/68 (10%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPA 272
           G   +   V+ PY A + ++L++  G ++ +  K     GWWEGEL  +      G FP 
Sbjct: 4   GSSGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGR-----RGVFPD 58

Query: 273 SYVKVMGG 280
           ++VK++ G
Sbjct: 59  NFVKLLSG 66

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 78.0 bits (193), Expect = 7e-19
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          S    +R ++ FV    +EL   PG+I+ V +K+     W      GQ G  P +Y+EP
Sbjct: 5  SSGEAHRVLFGFVPETKEELQVMPGNIVFV-LKKG-NDNWATVMFNGQKGLVPCNYLEP 61

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 156
           E +   + +      +L      +++V KK ND W T     + GL P NY+ P
Sbjct: 8   EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFNGQKGLVPCNYLEP 61

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G   E   VL  +   + E+L +  G ++ + KK    W            Q G  P +Y
Sbjct: 4   GSSGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMF-----NGQKGLVPCNY 58

Query: 275 VKVMGG 280
           ++ + G
Sbjct: 59  LEPVSG 64

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 77.2 bits (191), Expect = 9e-19
 Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +  R  ++F +++  EL+ Q GDI+ +  K+  +  WL GE  G+ G FP +YVE 
Sbjct: 2  KAARLKFDFQAQSPKELTLQKGDIVYI-HKEV-DKNWLEGEHHGRLGIFPANYVEV 55

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           +     + + +  P +LT  + +++Y+ K+ + +W  G    R G+FP+NYV
Sbjct: 2   KAARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGRLGIFPANYV 53

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 58.8 bits (143), Expect = 6e-12
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A +   + A S ++L+L +G ++ I K+    W EGE   +     +G FPA+YV+V+
Sbjct: 4   ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHHGR-----LGIFPANYVEVL 56

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 77.2 bits (191), Expect = 9e-19
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
             AIY + ++  DE+S  PGDII V ++ +   GW  GE  G  G FP SY +
Sbjct: 2  AMEAIYAYEAQGDDEISIDPGDIITV-IRGDDGSGWTYGECDGLKGLFPTSYCK 54

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 66.0 bits (162), Expect = 1e-14
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
           A Y Y++    +++ +  ++I V + ++   W  G      GLFP++Y 
Sbjct: 5   AIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECDGLKGLFPTSYC 53

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 50.2 bits (121), Expect = 5e-09
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 222 TVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
             +  Y A   +++S+  G +I  IR    +GW  GE          G FP SY K
Sbjct: 4   EAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGEC-----DGLKGLFPTSYCK 54

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 77.4 bits (191), Expect = 1e-18
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           S  R  +A+Y F +R  DEL+ + GDI+++  K+  E GW  G L G+ G FP +YVE  
Sbjct: 5   SSGRLCKALYSFQARQDDELNLEKGDIVIIHEKK--EEGWWFGSLNGKKGHFPAAYVEEL 62

Query: 96  DETGEVVPE 104
                    
Sbjct: 63  PSNAGNTAT 71

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 67.0 bits (164), Expect = 9e-15
 Identities = 14/68 (20%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
               A Y + + +  +L   + +++ + +K E  WW G++  + G FP+ YV    +   
Sbjct: 8   RLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGKKGHFPAAYVEELPSNAG 67

Query: 163 AAAVDPTP 170
             A   + 
Sbjct: 68  NTATKASG 75

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 56.6 bits (137), Expect = 7e-11
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G    +   L  + A   ++L+L +G +++I +K   GWW G L  K      G FPA+Y
Sbjct: 4   GSSGRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLNGK-----KGHFPAAY 58

Query: 275 VKVM 278
           V+ +
Sbjct: 59  VEEL 62

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 76.8 bits (190), Expect = 1e-18
 Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          + ++ R  A+++F   +  EL+F+ GD+I + + +     WL G +RG TG FP S+V+ 
Sbjct: 1  LIKHMRAEALFDFTGNSKLELNFKAGDVIFL-LSRI-NKDWLEGTVRGATGIFPLSFVKI 58

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 74.9 bits (185), Expect = 7e-18
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
            A + +      +L F   +VI++  + N DW  GT+   TG+FP ++V
Sbjct: 8   EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 56

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 57.9 bits (141), Expect = 1e-11
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  L  +T  S  +L+   G +I +  +    W EG ++        G FP S+VK++
Sbjct: 7   AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA-----TGIFPLSFVKIL 59

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 76.5 bits (189), Expect = 2e-18
 Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 2/63 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          S+ R+ + ++E++ +N DEL  + GDII +  ++  E GW +G L  + G FP ++V+  
Sbjct: 5  SKKRQCKVLFEYIPQNEDELELKVGDIIDI-NEEV-EEGWWSGTLNNKLGLFPSNFVKEL 62

Query: 96 DET 98
          + T
Sbjct: 63 EVT 65

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 71.1 bits (175), Expect = 2e-16
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA 159
                 + Y      +L     ++I + ++ E  WW+GT+ ++ GLFPSN+V   E 
Sbjct: 8   RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELEV 64

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 57.3 bits (139), Expect = 3e-11
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
           P G K     VL  Y   + ++L L  G +I I ++   GWW G L       ++G FP+
Sbjct: 2   PLGSKKRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL-----NNKLGLFPS 56

Query: 273 SYVKVM 278
           ++VK +
Sbjct: 57  NFVKEL 62

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 76.1 bits (188), Expect = 2e-18
 Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)

Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          + +  +  A++ + +   ++L FQ GDII+V + +     WL GE +G+ G FP+ +VE 
Sbjct: 2  LKKGSQVEALFSYEATQPEDLEFQEGDIILV-LSKV-NEEWLEGESKGKVGIFPKVFVED 59

Query: 95 CD 96
            
Sbjct: 60 SA 61

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 75.3 bits (186), Expect = 5e-18
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
                A + Y++T+P DL F + ++I V  K N +W  G    + G+FP  +V  
Sbjct: 5   GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 58.4 bits (142), Expect = 1e-11
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           KK      L  Y AT  E L    G +I++  K    W EGE + K     VG FP  +V
Sbjct: 3   KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGK-----VGIFPKVFV 57

Query: 276 K 276
           +
Sbjct: 58  E 58

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 77.2 bits (190), Expect = 3e-18
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 24 DTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK--QNAEPGWLAG--E 79
             + S D    + +   + IY +  +N DEL   PGD I +      +   GW+ G   
Sbjct: 3  SGSSGSRDIR-FANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSL 61

Query: 80 LRGQTGWFPESYVEPCDET 98
            G +G  PE+Y+   DE 
Sbjct: 62 TTGCSGLLPENYITKADEC 80

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 55.2 bits (133), Expect = 3e-10
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 7/60 (11%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-----WWTGTIGD--RTGLFPSNYVVP 156
           E     YPY      +L     + I+++  E       W  GT      +GL P NY+  
Sbjct: 17  ETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITK 76

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT----GWWEGELQAKGKKRQVG 268
            +    E   V+ PYT  + ++L L  G  I +     T    GW  G     G     G
Sbjct: 11  IRFANHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGC---SG 67

Query: 269 WFPASYVK 276
             P +Y+ 
Sbjct: 68  LLPENYIT 75

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 76.1 bits (188), Expect = 3e-18
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 2/60 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
          R+ + ++E++ +N DEL  + GDII +  ++  E GW +G L  + G FP ++V+  +  
Sbjct: 2  RQCKVLFEYIPQNEDELELKVGDIIDI-NEEV-EEGWWSGTLNNKLGLFPSNFVKELELE 59

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 73.0 bits (180), Expect = 4e-17
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEAQTP 162
                 + Y      +L     ++I + ++  + WW+GT+ ++ GLFPSN+V   E +  
Sbjct: 2   RQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLNNKLGLFPSNFVKELELEHH 61

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
             VL  Y   + ++L L  G +I I ++   GWW G L       ++G FP+++VK +
Sbjct: 4   CKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTL-----NNKLGLFPSNFVKEL 56

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 76.1 bits (188), Expect = 3e-18
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          S  R  RA ++F ++   EL  Q GDI+ +  KQ  +  W  GE  G+ G FP +Y+E  
Sbjct: 5  SSGRPARAKFDFKAQTLKELPLQKGDIVYI-YKQI-DQNWYEGEHHGRVGIFPRTYIELL 62

Query: 96 DE 97
            
Sbjct: 63 SG 64

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
               A + + +    +L   + +++Y+ K+ + +W+ G    R G+FP  Y+
Sbjct: 8   RPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHHGRVGIFPRTYI 59

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G     A     + A + ++L L +G ++ I K+    W+EGE        +VG FP +Y
Sbjct: 4   GSSGRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEH-----HGRVGIFPRTY 58

Query: 275 VKVMGG 280
           ++++ G
Sbjct: 59  IELLSG 64

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 75.7 bits (187), Expect = 4e-18
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYV 154
              +A Y +   E GDL F + +VI + KK   +NDWWTG +  R G+FP+NYV
Sbjct: 4   PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 57

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 70.3 bits (173), Expect = 3e-16
 Identities = 18/55 (32%), Positives = 30/55 (54%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +  A+Y F      +L F+ GD+I +  K +++  W  G + G+ G FP +YVE 
Sbjct: 5  KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVEL 59

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 51.8 bits (125), Expect = 2e-09
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 7/60 (11%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  L  +    S  L   +G +I I KK+     WW G +  +      G FPA+YV+++
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGR-----EGIFPANYVELV 60

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 75.7 bits (187), Expect = 4e-18
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          S  + +RA+Y F  R  DEL F+ GDII +    + +  W  G  +G+TG  P +YV   
Sbjct: 5  SSGKVFRALYTFEPRTPDELYFEEGDIIYI-TDMS-DTNWWKGTSKGRTGLIPSNYVAEQ 62

Query: 96 DE 97
            
Sbjct: 63 SG 64

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEA 159
            + + A Y ++   P +L F + ++IY+T   + +WW GT   RTGL PSNYV     
Sbjct: 7   GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQSG 64

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 56.8 bits (138), Expect = 4e-11
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G   ++   L  +   + ++L    G +I I   + T WW+G       K + G  P++Y
Sbjct: 4   GSSGKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS-----KGRTGLIPSNY 58

Query: 275 VKVMGG 280
           V    G
Sbjct: 59  VAEQSG 64

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 75.3 bits (186), Expect = 5e-18
 Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           + + A Y ++   P +L F + ++IY+T   + +WW GT   RTGL PSNYV
Sbjct: 4   KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYV 55

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 74.1 bits (183), Expect = 1e-17
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          + +RA+Y F  R  DEL F+ GDII +    + +  W  G  +G+TG  P +YV 
Sbjct: 4  KVFRALYTFEPRTPDELYFEEGDIIYI-TDMS-DTNWWKGTSKGRTGLIPSNYVA 56

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           + ++   L  +   + ++L    G +I I   + T WW+G       K + G  P++YV 
Sbjct: 2   QVKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTS-----KGRTGLIPSNYVA 56

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 75.3 bits (186), Expect = 5e-18
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 96  DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           DETG+   E  +  Y Y    P +LT  + +++ +    N DWW   +  R G  P+ Y+
Sbjct: 2   DETGK---ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVNGRQGFVPAAYL 58

Query: 155 VPYE 158
              +
Sbjct: 59  KKLD 62

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          +       +Y++  ++  EL+ + GDI+ +    +    W   E+ G+ G+ P +Y++  
Sbjct: 4  TGKELVLVLYDYQEKSPRELTVKKGDILTL--LNSTNKDWWKIEVNGRQGFVPAAYLKKL 61

Query: 96 D 96
          D
Sbjct: 62 D 62

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 59.2 bits (144), Expect = 4e-12
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           E+  VL  Y   S  +L++ +G ++ +   T   WW+ E+       + G+ PA+Y+K +
Sbjct: 7   ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEV-----NGRQGFVPAAYLKKL 61

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 75.4 bits (186), Expect = 5e-18
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)

Query: 39 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
          ++ + I+      N   LSF  GD+I + +    + GWL GE       GWFP SY +  
Sbjct: 7  QKVKTIFPHTAGSNKTLLSFAQGDVITL-LIPEEKDGWLYGEHDVSKARGWFPSSYTKLL 65

Query: 96 DE 97
          +E
Sbjct: 66 EE 67

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 5/64 (7%)

Query: 217 KPEIATVLAPYTATSSE-QLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           K +    + P+TA S++  LS ++G +I +   +   GW  GE      +   GWFP+SY
Sbjct: 5   KKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKAR---GWFPSSY 61

Query: 275 VKVM 278
            K++
Sbjct: 62  TKLL 65

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 55.4 bits (134), Expect = 1e-10
 Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 108 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVPYE 158
             +P+   +    L+F Q +VI +   E    W  G        G FPS+Y    E
Sbjct: 11  TIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSKARGWFPSSYTKLLE 66

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 75.4 bits (186), Expect = 7e-18
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 97  ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV 155
            +G    E Y+   PY S    ++ F +   + V +K    WW      + G  P++Y+ 
Sbjct: 2   SSGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYLGKEGWAPASYLK 61

Query: 156 PYEAQTPAA 164
             +   P++
Sbjct: 62  KAKDSGPSS 70

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 72.7 bits (179), Expect = 7e-17
 Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +G S   +Y  +  + S++ DE+ F+ G  + V +++N   GW      G+ GW P SY+
Sbjct: 3  SGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEV-IRKN-LEGWWYIRYLGKEGWAPASYL 60

Query: 93 EPCDETG 99
          +   ++G
Sbjct: 61 KKAKDSG 67

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+      E    + PYT+ S +++   +G  + + +K   GWW           + GW 
Sbjct: 1   GSSGSSGEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL-----GKEGWA 55

Query: 271 PASYVKVMGGGG 282
           PASY+K     G
Sbjct: 56  PASYLKKAKDSG 67

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 75.4 bits (186), Expect = 7e-18
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 158
            E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV   +
Sbjct: 5   KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD 61

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 14/69 (20%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           +      A+Y++  ++  E++ + GDI+ +    +    W   E+  + G+ P +YV+  
Sbjct: 3   TGKELVLALYDYQEKSPREVTMKKGDILTL--LNSTNKDWWKVEVNDRQGFVPAAYVKKL 60

Query: 96  DETGEVVPE 104
           D       E
Sbjct: 61  DPAQSASRE 69

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 58.9 bits (143), Expect = 8e-12
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G   E+   L  Y   S  ++++ +G ++ +   T   WW+ E+       + G+ PA+Y
Sbjct: 2   GTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-----NDRQGFVPAAY 56

Query: 275 VKVM 278
           VK +
Sbjct: 57  VKKL 60

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 74.9 bits (185), Expect = 7e-18
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVP 156
            +  A Y +++ E  +L F   EV+ V    N  WWTG + ++ GLFP+NYV P
Sbjct: 2   RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 71.8 bits (177), Expect = 8e-17
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 2/56 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          R  RA+Y+F +   DEL F+ G+++ V +  +  P W  G L  + G FP +YV P
Sbjct: 2  RWARALYDFEALEEDELGFRSGEVVEV-LDSS-NPSWWTGRLHNKLGLFPANYVAP 55

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  L  + A   ++L    G+++ +   +   WW G L       ++G FPA+YV  M
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL-----HNKLGLFPANYVAPM 56

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 74.9 bits (185), Expect = 7e-18
 Identities = 15/58 (25%), Positives = 32/58 (55%), Gaps = 2/58 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
               +++ +++ DEL+   G+II    K+  + GW  G++ G+ G FP+++V    +
Sbjct: 3  EAIVEFDYQAQHDDELTISVGEIITNIRKE--DGGWWEGQINGRRGLFPDNFVREIKK 58

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 70.6 bits (174), Expect = 2e-16
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           I  + Y +    +LT +  E+I   +KE+  WW G I  R GLFP N+V
Sbjct: 5   IVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQINGRRGLFPDNFV 53

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 19/58 (32%), Positives = 33/58 (56%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A V   Y A   ++L++S G++I   +K   GWWEG++   G+    G FP ++V+ +
Sbjct: 4   AIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQI--NGR---RGLFPDNFVREI 56

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 75.4 bits (186), Expect = 7e-18
 Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
                  A Y+F +   DELSF+ GDI+ V + +  +  W   EL G+ G+ P++Y+E  
Sbjct: 7   VGSMEAIAKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIEMK 65

Query: 96  DETGEVVPE 104
                +V +
Sbjct: 66  PHPEFIVTD 74

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 70.0 bits (172), Expect = 7e-16
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 97  ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
               V     IA Y + +T   +L+F + +++ V  +E D  W+   +  + G  P NY+
Sbjct: 3   RRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 62

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVG 268
                      A     + AT+ ++LS  RG ++ +  +     W++ EL       + G
Sbjct: 1   GSRRASVGSMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL-----NGKDG 55

Query: 269 WFPASYVKVM 278
           + P +Y+++ 
Sbjct: 56  FIPKNYIEMK 65

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 74.6 bits (184), Expect = 8e-18
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
             RA + F   N DELSF  GD+I V   +  E GW  G   G+TGWFP +YV  
Sbjct: 5  SVVRAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYVRE 58

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 70.7 bits (174), Expect = 2e-16
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 156
               A + +  T   +L+F++ +VI+VT+  E  WW GT   RTG FPSNYV  
Sbjct: 5   SVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYVRE 58

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 58.4 bits (142), Expect = 8e-12
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 5/64 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G    +      +  T+ ++LS S+G +I + +    GWWEG    +      GWFP++Y
Sbjct: 1   GPLGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGR-----TGWFPSNY 55

Query: 275 VKVM 278
           V+ +
Sbjct: 56  VREI 59

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 74.9 bits (185), Expect = 8e-18
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           PE+ IA + Y      +L+F +   + +  +   DWW G      GL P  Y+
Sbjct: 6   PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGIDGLVPHQYI 58

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 67.2 bits (165), Expect = 4e-15
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 2/52 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           A +++V R+  ELSF+ G  +++     A   W  G   G  G  P  Y+ 
Sbjct: 10 IAKFDYVGRSARELSFKKGASLLL--YHRASEDWWEGRHNGIDGLVPHQYIV 59

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           PE A     Y   S+ +LS  +G  +++  + +  WWEG           G  P  Y+ V
Sbjct: 6   PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHNGI-----DGLVPHQYIVV 60

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 75.0 bits (185), Expect = 8e-18
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
             RA + F   N DELSF  GD+I V   +  E GW  G   G+TGWFP +YV     +
Sbjct: 7  LVVRAKFNFQQTNEDELSFSKGDVIHVTRVE--EGGWWEGTHNGRTGWFPSNYVREIKPS 64

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 70.3 bits (173), Expect = 4e-16
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 1/53 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
                A + +  T   +L+F++ +VI+VT+  E  WW GT   RTG FPSNYV
Sbjct: 6   QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHNGRTGWFPSNYV 58

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 5/65 (7%)

Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
                 +      +  T+ ++LS S+G +I + +    GWWEG     G+    GWFP++
Sbjct: 2   SANSQLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTH--NGR---TGWFPSN 56

Query: 274 YVKVM 278
           YV+ +
Sbjct: 57  YVREI 61

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 75.1 bits (185), Expect = 9e-18
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN---DWWTGTIGDRTGLFPSNYVVPYEA 159
           P    A Y ++  +PGDL F   + I V  K +   DWW G +  +TG+FP+NYV     
Sbjct: 17  PIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSG 76

Query: 160 QTPA 163
            +  
Sbjct: 77  PSSG 80

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 74.0 bits (182), Expect = 3e-17
 Identities = 23/71 (32%), Positives = 35/71 (49%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
          +       +++     A+Y F  +   +L+FQ GD I V  K ++   W  G+LRGQTG 
Sbjct: 6  SGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGI 65

Query: 87 FPESYVEPCDE 97
          FP +YV     
Sbjct: 66 FPANYVTMNSG 76

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 7/80 (8%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQA 260
           SS ++         +P   T L  +       L+   G  I +  KT     WWEG+L  
Sbjct: 2   SSGSSGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKL-- 59

Query: 261 KGKKRQVGWFPASYVKVMGG 280
              + Q G FPA+YV +  G
Sbjct: 60  ---RGQTGIFPANYVTMNSG 76

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 75.1 bits (185), Expect = 9e-18
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 32 PTGVSEYRRY-RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPES 90
          P G  E+ +Y RA+ ++   +   L F+  DII +   ++ E  W  G+L G+ G FP  
Sbjct: 3  PLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITI-TFKDQENKWFMGQLNGKEGSFPVD 61

Query: 91 YVEPCDET 98
          +VE     
Sbjct: 62 HVEILLSD 69

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 6/74 (8%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNYVVPYEAQ 160
            +Y  A   Y+ ++   L F ++++I +T K  EN W+ G +  + G FP ++V    + 
Sbjct: 10  AKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGKEGSFPVDHVEILLSD 69

Query: 161 TPAAAVDPTPATPV 174
            P     P P  PV
Sbjct: 70  VPP----PQPVHPV 79

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 53.1 bits (128), Expect = 1e-09
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVG 268
                 +  + A  L  Y  + +  L   R  +I I  K     W+ G+L  K      G
Sbjct: 2   GPLGSPEFAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLNGK-----EG 56

Query: 269 WFPASYVKVM 278
            FP  +V+++
Sbjct: 57  SFPVDHVEIL 66

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 36 SEYRRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 92
          S  ++ + I+   +  N   LSF  GD++ + +    + GWL GE       GWFP SY 
Sbjct: 5  SSGQKVKTIFPHTAGNNKTLLSFAQGDVLTL-LIPEEKDGWLYGEHDTTKARGWFPSSYT 63

Query: 93 EPCDE 97
          +    
Sbjct: 64 KLLSG 68

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 57.0 bits (138), Expect = 4e-11
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 5/69 (7%)

Query: 214 KGKKPEIATVLAPYTA-TSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFP 271
            G   +    + P+TA  +   LS ++G ++ +   +   GW  GE      +   GWFP
Sbjct: 3   SGSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKAR---GWFP 59

Query: 272 ASYVKVMGG 280
           +SY K++ G
Sbjct: 60  SSYTKLLSG 68

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 103 PEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVPY 157
            +     +P+ +      L+F Q +V+ +   E    W  G        G FPS+Y    
Sbjct: 7   GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYTKLL 66

Query: 158 EAQT 161
              +
Sbjct: 67  SGPS 70

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 74.6 bits (184), Expect = 1e-17
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 97  ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVV 155
            +G    E Y+    Y   E  +L+    EV+ V +K E+ WW  +  +  G  P+ Y+ 
Sbjct: 2   SSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTSEEQGWVPATYLE 61

Query: 156 PYEAQTPAA 164
              +   + 
Sbjct: 62  AQNSGPSSG 70

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 72.3 bits (178), Expect = 8e-17
 Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
           S+  +G+    +Y  +  +  +   ELS Q G+++ V +++N E GW       + GW 
Sbjct: 1  GSSGSSGL---EQYVVVSNYKKQENSELSLQAGEVVDV-IEKN-ESGWWFVSTSEEQGWV 55

Query: 88 PESYVEPCDET 98
          P +Y+E  +  
Sbjct: 56 PATYLEAQNSG 66

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 61.2 bits (149), Expect = 1e-12
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 5/71 (7%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+      E   V++ Y    + +LSL  G+++ + +K  +GWW           + GW 
Sbjct: 1   GSSGSSGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS-----EEQGWV 55

Query: 271 PASYVKVMGGG 281
           PA+Y++    G
Sbjct: 56  PATYLEAQNSG 66

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 74.2 bits (183), Expect = 1e-17
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 99  GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           G +      A Y YD+ +  +L+FN +++I + K+  + WWTG +  + GLFP+NYV
Sbjct: 1   GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLRGKQGLFPNNYV 57

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 22/56 (39%), Positives = 35/56 (62%), Gaps = 2/56 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
           + +A+Y + +++ DELSF   DII + +K++   GW  G LRG+ G FP +YV  
Sbjct: 6  PQCKALYAYDAQDTDELSFNANDIIDI-IKED-PSGWWTGRLRGKQGLFPNNYVTK 59

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
                 L  Y A  +++LS +   +I I K+  +GWW G L  +GK    G FP +YV  
Sbjct: 5   SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRL--RGK---QGLFPNNYVTK 59

Query: 278 M 278
           +
Sbjct: 60  I 60

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           S  RR +A+ +F   + DEL F+  DII +  ++  +     GEL G  GWFP  +VE  
Sbjct: 5   SSGRRAKALLDFERHDDDELGFRKNDIITIISQK--DEHCWVGELNGLRGWFPAKFVEVL 62

Query: 96  DETGEVVP 103
           DE  +   
Sbjct: 63  DERSKEYS 70

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 70.8 bits (174), Expect = 3e-16
 Identities = 11/69 (15%), Positives = 33/69 (47%), Gaps = 1/69 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPA 163
              A   ++  +  +L F ++++I +  +++   W G +    G FP+ +V   + ++  
Sbjct: 9   RAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELNGLRGWFPAKFVEVLDERSKE 68

Query: 164 AAVDPTPAT 172
            ++   P++
Sbjct: 69  YSIASGPSS 77

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 52.3 bits (126), Expect = 2e-09
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+        A  L  +     ++L   +  +I I  +     W GEL         GWF
Sbjct: 1   GSSGSSGRR-AKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN-----GLRGWF 54

Query: 271 PASYVKVM 278
           PA +V+V+
Sbjct: 55  PAKFVEVL 62

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 74.2 bits (183), Expect = 1e-17
 Identities = 21/56 (37%), Positives = 33/56 (58%), Gaps = 2/56 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          RR +  + ++ +N DEL  + GDII V  +   E GW  G L G+TG FP ++++ 
Sbjct: 8  RRCQVAFSYLPQNDDELELKVGDIIEVVGEV--EEGWWEGVLNGKTGMFPSNFIKE 61

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYEA 159
                A+ Y      +L     ++I V  +  + WW G +  +TG+FPSN++     
Sbjct: 8   RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLNGKTGMFPSNFIKELSG 64

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G       V   Y   + ++L L  G +I +  +   GWWEG L       + G FP+++
Sbjct: 4   GSSGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVL-----NGKTGMFPSNF 58

Query: 275 VKVMGG 280
           +K + G
Sbjct: 59  IKELSG 64

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 75.5 bits (185), Expect = 2e-17
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 15/94 (15%)

Query: 16  AWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--- 72
                  + T      P G     + +A +++ + + DEL  + GD+++V   QN E   
Sbjct: 24  VNGAVEGSTTTGRLDLPPGFM--FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQD 81

Query: 73  PGWLAG----------ELRGQTGWFPESYVEPCD 96
            GWL G          EL    G FPE++ E   
Sbjct: 82  EGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ 115

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 55.5 bits (133), Expect = 3e-10
 Identities = 14/87 (16%), Positives = 26/87 (29%), Gaps = 16/87 (18%)

Query: 88  PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGT 141
             S      +          A + Y +T+  +L     +V+ V   +N       W  G 
Sbjct: 29  EGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV 88

Query: 142 ----------IGDRTGLFPSNYVVPYE 158
                     +    G+FP N+    +
Sbjct: 89  KESDWNQHKELEKCRGVFPENFTERVQ 115

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 47.0 bits (111), Expect = 4e-07
 Identities = 15/104 (14%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 188 TSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEI---ATVLAPYTATSSEQLSLSRGQLIM 244
           +S +            +   +         P           YTAT +++L L  G +++
Sbjct: 11  SSGLVPRGSHMATVNGAVEGSTTTGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVL 70

Query: 245 IRKKTTT-----GWWEGELQAKGKKR-----QVGWFPASYVKVM 278
           +           GW  G  ++   +        G FP ++ + +
Sbjct: 71  VIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 114

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 73.7 bits (182), Expect = 2e-17
 Identities = 23/55 (41%), Positives = 36/55 (65%), Gaps = 2/55 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          + +A+Y++ ++ GDEL+F+ GD I+V  K     GW  GEL G+ GW P +YV+ 
Sbjct: 5  QVKALYDYDAQTGDELTFKEGDTIIVHQKD--PAGWWEGELNGKRGWVPANYVQD 57

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 69.1 bits (170), Expect = 1e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
              A Y YD+    +LTF + + I V +K    WW G +  + G  P+NYV
Sbjct: 5   QVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELNGKRGWVPANYV 55

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
              L  Y A + ++L+   G  I++ +K   GWWEGEL   GK    GW PA+YV+ +
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGEL--NGK---RGWVPANYVQDI 58

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 73.9 bits (182), Expect = 2e-17
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 4/61 (6%)

Query: 39 RRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
           R +AI+   +  N   LSF+ GD+I + V + A  GW  GE       GWFP SY    
Sbjct: 8  MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPE-ARDGWHYGESEKTKMRGWFPFSYTRVL 66

Query: 96 D 96
          D
Sbjct: 67 D 67

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 55.8 bits (135), Expect = 9e-11
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 213 PKGKKPEIATVLAPYTA-TSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWF 270
           P G        +  + A  +S  LS   G LI +   +   GW  GE +    +   GWF
Sbjct: 2   PLGSGRMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMR---GWF 58

Query: 271 PASYVKVM 278
           P SY +V+
Sbjct: 59  PFSYTRVL 66

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 54.2 bits (131), Expect = 3e-10
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 103 PEYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTI--GDRTGLFPSNYVVPY 157
                A + + + +    L+F + ++I +   E    W  G        G FP +Y    
Sbjct: 7   RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTKMRGWFPFSYTRVL 66

Query: 158 E 158
           +
Sbjct: 67  D 67

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 74.3 bits (183), Expect = 2e-17
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
            A + +      +L F   +VI++  + N DW  GT+   TG+FP ++V
Sbjct: 22  EALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFV 70

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 73.5 bits (181), Expect = 3e-17
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
               R  A+++F   +  EL+F+ GD+I + + +     WL G +RG TG FP S+V+  
Sbjct: 16  MAAPRAEALFDFTGNSKLELNFKAGDVIFL-LSRI-NKDWLEGTVRGATGIFPLSFVKIL 73

Query: 96  DETGE 100
            +  E
Sbjct: 74  KDFPE 78

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  L  +T  S  +L+   G +I +  +    W EG ++        G FP S+VK++
Sbjct: 21  AEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGA-----TGIFPLSFVKIL 73

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYEA 159
           P  ++A Y + ++    L+  + E + V    ++  W      +  G  PS Y+ P  +
Sbjct: 5   PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSAYITPVNS 63

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 69.5 bits (171), Expect = 8e-16
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
          + A+Y+FV+   + LS   G+ + V +  N    W   + +   GW P +Y+ P +
Sbjct: 8  FVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSAYITPVN 62

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 51.4 bits (124), Expect = 3e-09
 Identities = 14/62 (22%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG-WWEGELQAKGKKRQVGWFPASYVK 276
           P +   L  + A+    LS+++G+ + +      G W E +      K   GW P++Y+ 
Sbjct: 5   PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT-----KNGQGWVPSAYIT 59

Query: 277 VM 278
            +
Sbjct: 60  PV 61

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTP 162
             Y+A Y +   E  DL     ++I + +  N DWW G I DR G FP+N+V      + 
Sbjct: 8   NTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQDRIGFFPANFVQRLSGPSS 67

Query: 163 A 163
            
Sbjct: 68  G 68

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 71.1 bits (175), Expect = 2e-16
 Identities = 17/59 (28%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
            Y A+Y+FV +  ++L  +PGDII + ++ +    W  G+++ + G+FP ++V+    
Sbjct: 8  NTYVALYKFVPQENEDLEMRPGDIITL-LEDS-NEDWWKGKIQDRIGFFPANFVQRLSG 64

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 56.5 bits (137), Expect = 4e-11
 Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G        L  +    +E L +  G +I + + +   WW+G++     + ++G+FPA++
Sbjct: 4   GSSGNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKI-----QDRIGFFPANF 58

Query: 275 VKVMGG 280
           V+ + G
Sbjct: 59  VQRLSG 64

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 73.4 bits (181), Expect = 3e-17
 Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          S   R +A+  +  +N  +L F  GD+I++  +Q  +  W  GE+ G +G FP S VE  
Sbjct: 5  SSGPRAKALCNYRGKNPGDLKFNKGDVILL-RRQL-DENWYQGEINGVSGIFPASSVEVI 62

Query: 96 DE 97
            
Sbjct: 63 SG 64

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 69.6 bits (171), Expect = 7e-16
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
                A   Y    PGDL FN+ +VI + ++ + +W+ G I   +G+FP++ V
Sbjct: 7   GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGVSGIFPASSV 59

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 20/70 (28%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+     P  A  L  Y   +   L  ++G +I++R++    W++GE+         G F
Sbjct: 1   GSSGSSGPR-AKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEINGV-----SGIF 54

Query: 271 PASYVKVMGG 280
           PAS V+V+ G
Sbjct: 55  PASSVEVISG 64

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 74.0 bits (182), Expect = 3e-17
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 97  ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVV 155
            + E   E  +A Y Y    P ++T  + +++ +    N DWW   + DR G  P+ YV 
Sbjct: 11  GSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVK 70

Query: 156 PYEAQTP 162
              A   
Sbjct: 71  KLAAAWS 77

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 12/71 (16%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
                +  +      A+Y++  ++  E++ + GDI+   +  +    W   E+  + G+
Sbjct: 6  HHHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEVNDRQGF 63

Query: 87 FPESYVEPCDE 97
           P +YV+    
Sbjct: 64 VPAAYVKKLAA 74

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 208 AQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQV 267
                      E+   L  Y   S  ++++ +G ++ +   T   WW+ E+       + 
Sbjct: 7   HHHHGSDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-----NDRQ 61

Query: 268 GWFPASYVKVM 278
           G+ PA+YVK +
Sbjct: 62  GFVPAAYVKKL 72

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 73.0 bits (180), Expect = 4e-17
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          R +Y+F   N  EL F+ GDII +   Q  +  W  G + G++G+FP +YVE 
Sbjct: 7  RGLYDFEPENQGELGFKEGDIITL-TNQI-DENWYEGMIHGESGFFPINYVEV 57

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 72.3 bits (178), Expect = 7e-17
 Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
              Y ++    G+L F + ++I +T + + +W+ G I   +G FP NYV
Sbjct: 7   RGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGESGFFPINYV 55

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
              L  +   +  +L    G +I +  +    W+EG +  +      G+FP +YV+V+
Sbjct: 6   CRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIHGE-----SGFFPINYVEVI 58

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 73.1 bits (180), Expect = 5e-17
 Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 4/70 (5%)

Query: 39  RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD 96
           +R  A+Y+F   N +EL    GDI+ +   ++   GWL  E     +TG  PE +V    
Sbjct: 6   QRAVALYDFEPENDNELRLAEGDIVFI-SYKH-GQGWLVAENESGSKTGLVPEEFVSYIQ 63

Query: 97  ETGEVVPEYY 106
              E    ++
Sbjct: 64  PELEHHHHHH 73

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 65.0 bits (159), Expect = 4e-14
 Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 3/57 (5%)

Query: 101 VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYV 154
           +V +  +A Y ++     +L   + ++++++ K    W       G +TGL P  +V
Sbjct: 3   IVNQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 59

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           + A  L  +   +  +L L+ G ++ I  K   GW   E ++  K    G  P  +V  +
Sbjct: 6   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSK---TGLVPEEFVSYI 62

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 73.1 bits (180), Expect = 5e-17
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQT 161
           P   IA + Y      +L+F +   + + ++ + DWW G      GL P  Y+V  +   
Sbjct: 9   PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGIDGLIPHQYIVVQDTSG 68

Query: 162 PAA 164
           P++
Sbjct: 69  PSS 71

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 70.0 bits (172), Expect = 5e-16
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           E     A +++V R   ELSF+ G  +++   Q A   W  G   G  G  P  Y+   
Sbjct: 7  GEPIEAIAKFDYVGRTARELSFKKGASLLL--YQRASDDWWEGRHNGIDGLIPHQYIVVQ 64

Query: 96 DETG 99
          D +G
Sbjct: 65 DTSG 68

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFP 271
           +    +P  A     Y   ++ +LS  +G  +++ ++ +  WWEG           G  P
Sbjct: 3   SGSSGEPIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHNGI-----DGLIP 57

Query: 272 ASYVKVMGGGG 282
             Y+ V    G
Sbjct: 58  HQYIVVQDTSG 68

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 73.2 bits (180), Expect = 6e-17
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)

Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQ 160
           V     A Y +++ E  +LTF   E+I V    + +WW G      GLFPSN+V      
Sbjct: 16  VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENHRGIGLFPSNFVTTNLNI 75

Query: 161 TPAAAVDPTPAT 172
              AA    P++
Sbjct: 76  ETEAAAVSGPSS 87

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 68.6 bits (168), Expect = 4e-15
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
          + S         R+ RA+Y+F +   +EL+F+ G+II+V      +  W  GE     G 
Sbjct: 6  SGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDS--DANWWKGENHRGIGL 63

Query: 87 FPESYVEPCDET 98
          FP ++V      
Sbjct: 64 FPSNFVTTNLNI 75

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 56.7 bits (137), Expect = 7e-11
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           SS ++        K       L  + A    +L+   G++I++   +   WW+GE     
Sbjct: 2   SSGSSGSEIQLNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGEN---- 57

Query: 263 KKRQVGWFPASYVKVM 278
             R +G FP+++V   
Sbjct: 58  -HRGIGLFPSNFVTTN 72

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 72.2 bits (178), Expect = 6e-17
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
               A Y +++ E  +LTF   E+I V    + +WW G     TGLFPSN+V
Sbjct: 6   RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 57

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 70.3 bits (173), Expect = 4e-16
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 2/55 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          RR RA+Y+F +   +EL+F+ G++I V +  + +  W  GE    TG FP ++V 
Sbjct: 6  RRVRALYDFEAVEDNELTFKHGELITV-LDDS-DANWWQGENHRGTGLFPSNFVT 58

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
              L  + A    +L+   G+LI +   +   WW+GE       R  G FP+++V 
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN-----HRGTGLFPSNFVT 58

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 72.7 bits (179), Expect = 7e-17
 Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESY 91
          +G S     +A+Y++  +  DELSF  G II +  K+N  + G+  GE  G+ G FP   
Sbjct: 3  SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVL 62

Query: 92 VEPCDE 97
          VE    
Sbjct: 63 VEELSS 68

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 98  TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNY 153
           +G     +  A Y Y+     +L+F +  +I +  KEN     +W G    R G+FPS  
Sbjct: 3   SGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVL 62

Query: 154 VVPYEAQTPAA 164
           V    +   + 
Sbjct: 63  VEELSSGPSSG 73

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT---GWWEGELQAKGKKRQV 267
           G+           L  Y   + ++LS   G +I I  K      G+WEGE   +     +
Sbjct: 1   GSSGSSGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGR-----I 55

Query: 268 GWFPASYVKVMGGG 281
           G FP+  V+ +  G
Sbjct: 56  GVFPSVLVEELSSG 69

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 72.7 bits (179), Expect = 7e-17
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 93  EPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPS 151
                  +       A Y +++ E  +LTF   E+I V    + +WW G      GLFPS
Sbjct: 7   HHSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETHQGIGLFPS 66

Query: 152 NYV 154
           N+V
Sbjct: 67  NFV 69

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 71.2 bits (175), Expect = 3e-16
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 30 TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPE 89
          +      E R+ RAIY+F +   +EL+F+ G+II V +  + +P W  GE     G FP 
Sbjct: 9  SHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITV-LDDS-DPNWWKGETHQGIGLFPS 66

Query: 90 SYVE 93
          ++V 
Sbjct: 67 NFVT 70

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 209 QAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVG 268
            +      +      +  + A    +L+   G++I +   +   WW+GE       + +G
Sbjct: 8   HSHMNHQHEARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGET-----HQGIG 62

Query: 269 WFPASYVK 276
            FP+++V 
Sbjct: 63  LFPSNFVT 70

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 72.3 bits (178), Expect = 8e-17
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYE 158
           E ++A   Y +T+   L+F + E I + ++   DWW G      G  P+N+V  + 
Sbjct: 8   EEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERAGCCGYIPANHVGKHS 63

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 70.4 bits (173), Expect = 5e-16
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          S    + AI ++ + +  +LSF  G+ I+  + +     W  GE  G  G+ P ++V   
Sbjct: 5  SSGEEFVAIADYAATDETQLSFLRGEKIL--ILRQTTADWWWGERAGCCGYIPANHVGKH 62

Query: 96 DE 97
            
Sbjct: 63 SG 64

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 56.1 bits (136), Expect = 7e-11
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G   E    +A Y AT   QLS  RG+ I+I ++TT  WW GE          G+ PA++
Sbjct: 4   GSSGEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGER-----AGCCGYIPANH 58

Query: 275 VKVMGG 280
           V    G
Sbjct: 59  VGKHSG 64

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 72.8 bits (179), Expect = 8e-17
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 158
              +A Y Y S  P DL+F + + + V ++  +WW        + G  PSNYV   +
Sbjct: 4   IIVVALYDYVSWSPDDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 60

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 21/57 (36%), Positives = 35/57 (61%), Gaps = 3/57 (5%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
            A+Y++VS + D+LSFQ GD ++V ++++ E  W A  L   + G+ P +YV   D
Sbjct: 6  VVALYDYVSWSPDDLSFQKGDQMVV-LEESGE-WWKARSLATRKEGYIPSNYVARVD 60

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 45.5 bits (108), Expect = 7e-07
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +  I   L  Y + S + LS  +G  +++ ++ +  WW+    A     + G+ P++YV 
Sbjct: 2   EDIIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATR---KEGYIPSNYVA 57

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 72.4 bits (178), Expect = 1e-16
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQT 161
                A + + +    +L F   +VI V    N DWW G I D  G FP+++V  +  Q 
Sbjct: 10  IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQIDDEEGWFPASFVRLWVNQE 69

Query: 162 PAAAVDPTPAT 172
                   P++
Sbjct: 70  DEVEEGSGPSS 80

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 69.0 bits (169), Expect = 2e-15
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 28  ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
            S+  +G        A+++ V+    EL+F+ GD+I V    N    W  G++  + GWF
Sbjct: 1   GSSGSSG-DSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASN--KDWWWGQIDDEEGWF 57

Query: 88  PESYVEPCDETGEVVPE 104
           P S+V       + V E
Sbjct: 58  PASFVRLWVNQEDEVEE 74

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGW 269
           +    G     A  +  +   ++ +L+   G +I +   +   WW G++       + GW
Sbjct: 2   SSGSSGDSIVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQI-----DDEEGW 56

Query: 270 FPASYVKVM 278
           FPAS+V++ 
Sbjct: 57  FPASFVRLW 65

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 72.5 bits (178), Expect = 1e-16
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 94  PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPS 151
           P            +A Y Y++    DL+F + + + V ++  +WW        + G  PS
Sbjct: 16  PGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPS 75

Query: 152 NYVVPYE 158
           NYV   +
Sbjct: 76  NYVARVD 82

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 56.7 bits (137), Expect = 7e-11
 Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 3/78 (3%)

Query: 20 APAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE 79
           P +            SE     A+Y++ + + ++LSFQ GD ++V ++++ E  W A  
Sbjct: 7  GPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVV-LEESGE-WWKARS 64

Query: 80 LR-GQTGWFPESYVEPCD 96
          L   + G+ P +YV   D
Sbjct: 65 LATRKEGYIPSNYVARVD 82

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 48.6 bits (116), Expect = 5e-08
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 194 GSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGW 253
           G        S  +        G +  I   L  Y A   E LS  +G  +++ ++ +  W
Sbjct: 1   GPLGSPGPNSHNSNTPGIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEW 59

Query: 254 WEGELQAKGKKRQVGWFPASYVK 276
           W+    A  K+   G+ P++YV 
Sbjct: 60  WKARSLATRKE---GYIPSNYVA 79

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 71.8 bits (177), Expect = 1e-16
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 96
          + +RAI+ FV R+ DEL  +  D ++V ++  AE  W        G  G FP  Y     
Sbjct: 4  QTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYYAIEVT 61

Query: 97 E 97
          +
Sbjct: 62 K 62

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 59.1 bits (144), Expect = 4e-12
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 3/56 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 156
           + + A + +      +L    D+ + V  +  D W+          G+FP+ Y + 
Sbjct: 4   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAIE 59

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           +    +  +     ++L L     +++  +    W+E      G     G FPA Y   +
Sbjct: 4   QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTG---ARGVFPAYYAIEV 60

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 71.6 bits (176), Expect = 1e-16
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT--IGDRTGLFPSNYVVP 156
               IA + Y+ +  GDL F + E + + ++  +WW        + G  P N+V  
Sbjct: 6   DNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 50.4 bits (121), Expect = 6e-09
 Identities = 10/60 (16%), Positives = 24/60 (40%), Gaps = 5/60 (8%)

Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEP 94
          +     A++ +   +  +L F+ G+ + +         W   +    GQ G+ P ++V  
Sbjct: 5  QDNLVIALHSYEPSHDGDLGFEKGEQLRI---LEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 14/66 (21%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+P   +  +   L  Y  +    L   +G+ + I ++ +  WW+ +    G   Q G+ 
Sbjct: 1   GSPL--QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTG---QEGFI 54

Query: 271 PASYVK 276
           P ++V 
Sbjct: 55  PFNFVA 60

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 30/72 (41%), Positives = 39/72 (54%), Gaps = 4/72 (5%)

Query: 28 ASTDPTGV--SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
          +S DP     S   +  AIY++     DELSFQ G II V +K+N + GW  G + G TG
Sbjct: 5  SSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYV-IKKN-DDGWYEGVMNGVTG 62

Query: 86 WFPESYVEPCDE 97
           FP +YVE    
Sbjct: 63 LFPGNYVESISG 74

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 70.8 bits (174), Expect = 4e-16
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
           E  +A Y Y   +  +L+F +  +IYV KK ++ W+ G +   TGLFP NYV      + 
Sbjct: 18  EKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMNGVTGLFPGNYVESISGPSS 77

Query: 163 A 163
            
Sbjct: 78  G 78

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           SS ++           E    +  YT    ++LS   G +I + KK   GW+EG +    
Sbjct: 2   SSGSSGDPPWAPRSYLEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVM---- 57

Query: 263 KKRQVGWFPASYVKVMGG 280
                G FP +YV+ + G
Sbjct: 58  -NGVTGLFPGNYVESISG 74

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 71.9 bits (177), Expect = 1e-16
 Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 4/68 (5%)

Query: 28 ASTDPTGVS--EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
           + DP  +   +    +A+Y+F   N  EL F+ GD+I +   Q  +  W  G L GQ+G
Sbjct: 1  GAMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITL-TNQI-DENWYEGMLHGQSG 58

Query: 86 WFPESYVE 93
          +FP SYV+
Sbjct: 59 FFPLSYVQ 66

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 69.6 bits (171), Expect = 8e-16
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
               A Y ++    G+L F + ++I +T + + +W+ G +  ++G FP +YV
Sbjct: 14  PSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYV 65

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 5/72 (6%)

Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
           A                L  +   +  +L    G LI +  +    W+EG L  +     
Sbjct: 2   AMDPEFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQ----- 56

Query: 267 VGWFPASYVKVM 278
            G+FP SYV+V+
Sbjct: 57  SGFFPLSYVQVL 68

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 71.4 bits (176), Expect = 1e-16
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPY 157
           EY  A + ++  +  DL F + +++ +  K E  WW     + + G+ P  YV  Y
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 64.5 bits (158), Expect = 5e-14
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
             RA+++F   + ++L F+ GDI+ +   +  E  W A +  G+ G  P  YVE 
Sbjct: 2  EYVRALFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRGMIPVPYVEK 56

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 52.1 bits (126), Expect = 1e-09
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           E    L  +     E L   +G ++ IR K    WW  E  ++G   + G  P  YV+
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEG---KRGMIPVPYVE 55

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 72.0 bits (177), Expect = 1e-16
 Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 6/75 (8%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ---T 84
           S+  +G ++ RR + IY+  + N DEL+F  G++I+V  ++  +  W  G + GQ    
Sbjct: 1  GSSGSSG-NKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEE--DQEWWIGHIEGQPERK 57

Query: 85 GWFPESYVEPCDETG 99
          G FP S+V    ++G
Sbjct: 58 GVFPVSFVHILSDSG 72

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 68.9 bits (169), Expect = 2e-15
 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI---GDRTGLFPSNYVVPYE 158
                  Y   +    +LTF + EVI VT +E+ +WW G I    +R G+FP ++V    
Sbjct: 10  VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEGQPERKGVFPVSFVHILS 69

Query: 159 AQTPAAA 165
              P++ 
Sbjct: 70  DSGPSSG 76

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 58.5 bits (142), Expect = 1e-11
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
             G K      +    A + ++L+   G++I++  +    WW G +  +G+  + G FP 
Sbjct: 5   SSGNKVRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHI--EGQPERKGVFPV 62

Query: 273 SYVKVM 278
           S+V ++
Sbjct: 63  SFVHIL 68

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-----RTGLFPSNYV 154
           VP   +A +PY S    DL F +D+ I VT  E+  W+ G   D       G+FP ++V
Sbjct: 6   VPFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFV 64

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 60.8 bits (148), Expect = 1e-12
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 7/59 (11%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPESYVE 93
          +  A + + S   D+L+F+    I+V      +  W  GE +        G FP+S+V 
Sbjct: 9  KVVAQFPYKSDYEDDLNFEKDQEIIV-TSVE-DAEWYFGEYQDSNGDVIEGIFPKSFVA 65

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 58.9 bits (143), Expect = 8e-12
 Identities = 16/54 (29%), Positives = 24/54 (44%)

Query: 226 PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG 279
           PY +   + L+  + Q I++       W+ GE Q        G FP S+V V G
Sbjct: 15  PYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQG 68

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           S     RA+Y+F   N  EL F+ GDII   +    +  W  G L G +G+FP +YVE  
Sbjct: 5   SSGPCCRALYDFEPENEGELGFKEGDIIT--LTNQIDENWYEGMLHGHSGFFPINYVEIL 62

Query: 96  DETGEVVP 103
                  P
Sbjct: 63  VALPHSGP 70

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV---VPYEAQ 160
              A Y ++    G+L F + ++I +T + + +W+ G +   +G FP NYV   V     
Sbjct: 9   CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGHSGFFPINYVEILVALPHS 68

Query: 161 TPAAA 165
            P++ 
Sbjct: 69  GPSSG 73

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 53.4 bits (129), Expect = 7e-10
 Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+     P     L  +   +  +L    G +I +  +    W+EG L         G+F
Sbjct: 1   GSSGSSGP-CCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLHGH-----SGFF 54

Query: 271 PASYVKVM 278
           P +YV+++
Sbjct: 55  PINYVEIL 62

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 13/61 (21%), Positives = 26/61 (42%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
                A   + + +   L F++ ++I V +++ +WW G +    G FP +YV        
Sbjct: 10  NLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYVKIIPGSES 69

Query: 163 A 163
            
Sbjct: 70  G 70

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 70.4 bits (173), Expect = 4e-16
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 3/69 (4%)

Query: 30 TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPE 89
          +  +   E  + +A+  + ++  + L+F   DII V  +Q     W  GE+ G  GWFP+
Sbjct: 2  SSGSSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE---NWWFGEVHGGRGWFPK 58

Query: 90 SYVEPCDET 98
          SYV+    +
Sbjct: 59 SYVKIIPGS 67

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 6/67 (8%)

Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFP 271
              G +   A  L  +TA     L+ S+  +I + ++    WW GE+         GWFP
Sbjct: 4   GSSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQE-NWWFGEVH-----GGRGWFP 57

Query: 272 ASYVKVM 278
            SYVK++
Sbjct: 58  KSYVKII 64

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESYVEP 94
          S     RA+Y+      DEL+F  GDI+ +  +      GW    L G+ G  P + ++ 
Sbjct: 5  SSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQI 64

Query: 95 CDE 97
             
Sbjct: 65 LSG 67

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 62.7 bits (153), Expect = 3e-13
 Identities = 11/55 (20%), Positives = 23/55 (41%), Gaps = 4/55 (7%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYV 154
               A Y        +L F++ +++ + ++       WW   +  R GL P+N +
Sbjct: 8   LLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRL 62

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.5 bits (124), Expect = 4e-09
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT---GWWEGELQAKGKKRQVGWFP 271
           G    +A  L       S++L+ SRG ++ I ++      GWW+  L  +      G  P
Sbjct: 4   GSSGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGR-----QGLAP 58

Query: 272 ASYVKVMGG 280
           A+ ++++ G
Sbjct: 59  ANRLQILSG 67

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 71.9 bits (176), Expect = 2e-16
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 15/81 (18%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMV-------------PVKQNAEPG 74
                   E  +YRA+Y F     ++L   PGD+++V               +     G
Sbjct: 1  GPLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVG 60

Query: 75 WLAG--ELRGQTGWFPESYVE 93
          W+ G  E   Q G FP +YVE
Sbjct: 61 WMPGLNERTRQRGDFPGTYVE 81

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 18/79 (22%)

Query: 94  PCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----------------W 137
           P           Y A YP+    P DL     +V+ V++                    W
Sbjct: 2   PLGSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGW 61

Query: 138 WTGTIG--DRTGLFPSNYV 154
             G      + G FP  YV
Sbjct: 62  MPGLNERTRQRGDFPGTYV 80

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 46.5 bits (110), Expect = 3e-07
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 18/89 (20%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT---------------GWWE 255
           G+  G +      L P+     E L L  G ++++ +                   GW  
Sbjct: 4   GSMAGPEGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMP 63

Query: 256 GELQAKGKKRQVGWFPASYVKVMGGGGIS 284
           G  +   ++   G FP +YV+ +G   ++
Sbjct: 64  GLNERTRQR---GDFPGTYVEFLGPVALA 89

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 71.6 bits (176), Expect = 2e-16
 Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 39 RRYRAIYEFVSRNG-------DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          RR  A+Y++  R          EL+F  GDII V   +  E G+  GEL GQ G  P ++
Sbjct: 8  RRMVALYDYDPRESSPNVDVEAELTFCTGDIITV-FGEIDEDGFYYGELNGQKGLVPSNF 66

Query: 92 VEPC 95
          +E  
Sbjct: 67 LEEV 70

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 103 PEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNY 153
               +A Y YD  E         +LTF   ++I V  +  E+ ++ G +  + GL PSN+
Sbjct: 7   GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNGQKGLVPSNF 66

Query: 154 V 154
           +
Sbjct: 67  L 67

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 13/74 (17%)

Query: 215 GKKPEIATVLAPYTATSS-------EQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQ 266
           G        L  Y    S        +L+   G +I +  +    G++ GEL       Q
Sbjct: 4   GSSGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELNG-----Q 58

Query: 267 VGWFPASYVKVMGG 280
            G  P+++++ + G
Sbjct: 59  KGLVPSNFLEEVSG 72

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 71.7 bits (176), Expect = 2e-16
 Identities = 18/77 (23%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 97  ETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVV 155
           E    +       + Y +    +L+  +   + V +K +D WW G+   + G FPSNYV 
Sbjct: 11  ERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQVGWFPSNYVT 70

Query: 156 PYEAQTPAAAVDPTPAT 172
                     V   P++
Sbjct: 71  EEGDSPLGDHVGSGPSS 87

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
               + +++   DELS   G  ++V  K     GW  G   GQ GWFP +YV    ++
Sbjct: 19 PAYVKFNYMAEREDELSLIKGTKVIVMEKC--SDGWWRGSYNGQVGWFPSNYVTEEGDS 75

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 60.2 bits (146), Expect = 4e-12
 Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 5/78 (6%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           SS ++   G         A V   Y A   ++LSL +G  +++ +K + GWW G    + 
Sbjct: 2   SSGSSGDPGERLYDLNMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYNGQ- 60

Query: 263 KKRQVGWFPASYVKVMGG 280
               VGWFP++YV   G 
Sbjct: 61  ----VGWFPSNYVTEEGD 74

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 70.7 bits (174), Expect = 2e-16
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
          ++  R RA+Y++  +  DELSF+ GD +   + +  E GW  G L  GQ G +P +YVE 
Sbjct: 1  AKGVRVRALYDYDGQEQDELSFKAGDELTK-LGEEDEQGWCRGRLDSGQLGLYPANYVEA 59

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 64.9 bits (159), Expect = 4e-14
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 154
            A Y YD  E  +L+F   + +    +  E  W  G +   + GL+P+NYV
Sbjct: 7   RALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSGQLGLYPANYV 57

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 46.4 bits (111), Expect = 2e-07
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
              L  Y     ++LS   G  +  + ++   GW  G L +     Q+G +PA+YV+ +
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLDSG----QLGLYPANYVEAI 60

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 70.7 bits (174), Expect = 3e-16
 Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 4/57 (7%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVE 93
          +R  A+Y+F   N +EL    GDI+ +   ++   GWL  E     +TG  PE +V 
Sbjct: 2  QRAVALYDFEPENDNELRLAEGDIVFI-SYKH-GQGWLVAENESGSKTGLVPEEFVS 56

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 62.6 bits (153), Expect = 3e-13
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYV 154
           +  +A Y ++     +L   + ++++++ K    W       G +TGL P  +V
Sbjct: 2   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSKTGLVPEEFV 55

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           + A  L  +   +  +L L+ G ++ I  K   GW   E ++  K    G  P  +V  +
Sbjct: 2   QRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESGSK---TGLVPEEFVSYI 58

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 70.8 bits (174), Expect = 3e-16
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV---VPYEAQTP 162
           +A + Y      +L+F + +V+ + ++  +DWW G      GL P  Y+      E Q  
Sbjct: 14  VACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHNGMRGLIPHKYITLPAGTEKQVV 73

Query: 163 AAA 165
            A 
Sbjct: 74  GAG 76

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 70.8 bits (174), Expect = 4e-16
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
           S+  +G        A + +  R   ELSF+ GD++ +   + A   W  GE  G  G  
Sbjct: 1  GSSGSSG-EGVVEAVACFAYTGRTAQELSFRRGDVLRL--HERASSDWWRGEHNGMRGLI 57

Query: 88 PESYVEPCDET 98
          P  Y+     T
Sbjct: 58 PHKYITLPAGT 68

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 58.1 bits (141), Expect = 1e-11
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
               G+    A     YT  ++++LS  RG ++ + ++ ++ WW GE          G  
Sbjct: 3   SGSSGEGVVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEH-----NGMRGLI 57

Query: 271 PASYVKVM 278
           P  Y+ + 
Sbjct: 58  PHKYITLP 65

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 73.7 bits (180), Expect = 4e-16
 Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 17/125 (13%)

Query: 45  YEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV------------ 92
           Y    R  DE +     +I     +  E G  A  ++     FP+               
Sbjct: 49  YSLTVREADEGNAVCHYLIER--GEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTE 106

Query: 93  -EPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLF 149
                   + + E  +  + +      DL F Q E + +  K   DWW        TGL 
Sbjct: 107 ASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLV 166

Query: 150 PSNYV 154
           P+NYV
Sbjct: 167 PANYV 171

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 53.3 bits (127), Expect = 6e-09
 Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 32  PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
                        ++F      +L F+ G+ + + + +  +  W A    G TG  P +Y
Sbjct: 112 AYKKPIIEVVVGTFKFTGERETDLPFEQGERLEI-LSKTNQDWWEARNALGTTGLVPANY 170

Query: 92  VE 93
           V+
Sbjct: 171 VQ 172

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 52.5 bits (125), Expect = 1e-08
 Identities = 27/168 (16%), Positives = 46/168 (27%), Gaps = 33/168 (19%)

Query: 130 VTKKENDWWTGTIGDRTGLF-------PSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKS 182
           ++++E     G      G F       P  Y +         AV              + 
Sbjct: 19  MSREEAHKLLGEPQVSIGTFLMRDSSRPGEYSLTVREADEGNAV---------CHYLIER 69

Query: 183 EGVTRTSSVSGGSRSGTPDFSS-------------FTAAQAGTPKGKKPEIATVLAPYTA 229
                  + + G +     F                 A+     K    E+      +T 
Sbjct: 70  GEPKEDGTAAAGVKIANQSFPDIPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTG 129

Query: 230 TSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
                L   +G+ + I  KT   WWE     +      G  PA+YV++
Sbjct: 130 ERETDLPFEQGERLEILSKTNQDWWEA----RNALGTTGLVPANYVQI 173

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 70.3 bits (173), Expect = 4e-16
 Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYEAQT 161
           EY  A + ++  +  DL F + +++ +  K    WW     + + G+ P  YV  Y    
Sbjct: 4   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYHHHH 63

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 66.5 bits (163), Expect = 1e-14
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
             RA+++F   + ++L F+ GDI+ +   +  E  W A +  G+ G  P  YVE    
Sbjct: 4  EYVRALFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRGMIPVPYVEKYHH 61

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 52.6 bits (127), Expect = 1e-09
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           E    L  +     E L   +G ++ IR K    WW  E  ++GK    G  P  YV+  
Sbjct: 4   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED-SEGK---RGMIPVPYVEKY 59

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 69.9 bits (172), Expect = 5e-16
 Identities = 22/64 (34%), Positives = 42/64 (65%), Gaps = 4/64 (6%)

Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 92
          ++  R YRA+Y++ +++ DE+SF+ GD I+  V+   + GW+ G ++  G+TG  P +Y+
Sbjct: 3  MANLRTYRAMYDYSAQDEDEVSFRDGDYIVN-VQPI-DDGWMYGTVQRTGRTGMLPANYI 60

Query: 93 EPCD 96
          E  +
Sbjct: 61 EFVN 64

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD--RTGLFPSNYV 154
             Y A Y Y + +  +++F   + I   +  ++ W  GT+    RTG+ P+NY+
Sbjct: 7   RTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTGRTGMLPANYI 60

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 53.4 bits (129), Expect = 5e-10
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
           G    + T  A   Y+A   +++S   G  I+  +    GW  G +Q  G   + G  PA
Sbjct: 1   GAMANLRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRTG---RTGMLPA 57

Query: 273 SYVKVM 278
           +Y++ +
Sbjct: 58  NYIEFV 63

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 70.5 bits (173), Expect = 5e-16
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQT 84
          ++ +  +     + Y A+Y F +RN +ELS      + +           W   E+ G+ 
Sbjct: 2  SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKK 61

Query: 85 GWFPESYVEPCD 96
          G+ P +Y+   +
Sbjct: 62 GYVPSNYIRKTE 73

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 13/62 (20%), Positives = 29/62 (46%), Gaps = 5/62 (8%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-----ENDWWTGTIGDRTGLFPSNYVVPY 157
            + Y A Y + +  P +L+ + ++ + + +        +WW   +  + G  PSNY+   
Sbjct: 13  NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKT 72

Query: 158 EA 159
           E+
Sbjct: 73  ES 74

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 13/69 (18%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMI----RKKTTTGWWEGELQAKGKKRQV 267
             + +  ++   +  + A +  +LS+S  Q + I         T WW  E+       + 
Sbjct: 7   GSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN-----GKK 61

Query: 268 GWFPASYVK 276
           G+ P++Y++
Sbjct: 62  GYVPSNYIR 70

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 70.1 bits (172), Expect = 5e-16
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 39 RRYRAIYEFVSRNG-------DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          +   A  ++   +G         L+ + GD++MV      + G+  GEL G  G  P   
Sbjct: 8  KIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMV-YGPMDDQGFYYGELGGHRGLVPAHL 66

Query: 92 VEPCDETG 99
          ++     G
Sbjct: 67 LDHMSLHG 74

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 60.5 bits (147), Expect = 2e-12
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 103 PEYYIAAYPYDSTEP-------GDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNY 153
            +  IAA  YD  +        G L     +V+ V    +D  ++ G +G   GL P++ 
Sbjct: 7   GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGHRGLVPAHL 66

Query: 154 V 154
           +
Sbjct: 67  L 67

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 43.2 bits (102), Expect = 3e-06
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 13/74 (17%)

Query: 213 PKGKKPEIATVLAPY-------TATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKK 264
             G   +I      Y             +L+L  G ++M+       G++ GEL      
Sbjct: 2   SSGSSGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELGGH--- 58

Query: 265 RQVGWFPASYVKVM 278
              G  PA  +  M
Sbjct: 59  --RGLVPAHLLDHM 70

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 70.0 bits (172), Expect = 5e-16
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 34  GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESY 91
           G    + +RAI+ FV R+ DEL  +  D ++V ++  AE  W        G  G FP  Y
Sbjct: 2   GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYY 59

Query: 92  VEPCDETGE 100
                +  E
Sbjct: 60  AIEVTKEPE 68

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 65.4 bits (160), Expect = 3e-14
 Identities = 13/70 (18%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 99  GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVV 155
           GE   + + A + +      +L    D+ + V  +  D W+          G+FP+ Y +
Sbjct: 2   GEEHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGARGVFPAYYAI 61

Query: 156 PYEAQTPAAA 165
               +    A
Sbjct: 62  EVTKEPEHMA 71

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 53.8 bits (130), Expect = 4e-10
 Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           +  +    +  +     ++L L     +++  +    W+E      G     G FPA Y 
Sbjct: 4   EHEQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTGA---RGVFPAYYA 60

Query: 276 KVM 278
             +
Sbjct: 61  IEV 63

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 70.0 bits (172), Expect = 7e-16
 Identities = 14/63 (22%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK----ENDWWTGTIGDRTGLFPSNYV---VPYEA 159
            A Y   +  P +L+F + +++ V ++     + WW  ++  R G+ P N +   V    
Sbjct: 7   KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD 66

Query: 160 QTP 162
           + P
Sbjct: 67  KKP 69

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 67.7 bits (166), Expect = 4e-15
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)

Query: 42  RAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESYVEPCDETGE 100
           +A+Y+ V+ + DELSF+ GDI+ V  +      GW    L G+ G  P + ++      +
Sbjct: 7   KALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYD 66

Query: 101 VVP 103
             P
Sbjct: 67  KKP 69

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 53.5 bits (129), Expect = 7e-10
 Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTT---TGWWEGELQAKGKKRQVGWFPASYVK 276
           +A  L    A S ++LS  +G ++ + ++ T    GWW   L  +      G  P + +K
Sbjct: 5   LAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGR-----QGIVPGNRLK 59

Query: 277 VMGG 280
           ++ G
Sbjct: 60  ILVG 63

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 70.2 bits (172), Expect = 7e-16
 Identities = 16/69 (23%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQT 161
              Y+    Y   +  +++F     + V +K E+ WW    G+  G  PS+Y+V  E + 
Sbjct: 8   ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGELEGWAPSHYLVLDENEQ 67

Query: 162 PAAAVDPTP 170
           P  +   + 
Sbjct: 68  PDPSGKESG 76

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 67.1 bits (164), Expect = 9e-15
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +G S    Y     +      E+SF  G  + V +++  E GW         GW P  Y+
Sbjct: 3  SGSSGATSYMTCSAYQKVQDSEISFPAGVEVQV-LEKQ-ESGWWYVRFGELEGWAPSHYL 60

Query: 93 EPCDE 97
             + 
Sbjct: 61 VLDEN 65

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 59.4 bits (144), Expect = 6e-12
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+            + Y      ++S   G  + + +K  +GWW             GW 
Sbjct: 1   GSSGSSGATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFGEL-----EGWA 55

Query: 271 PASYVKVM 278
           P+ Y+ + 
Sbjct: 56  PSHYLVLD 63

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 69.6 bits (171), Expect = 8e-16
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYE 158
           E YIA   + + + GDLTF + E++ V +K  + WW         GL P  Y+ PY 
Sbjct: 11  EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDAKGNEGLVPRTYLEPYS 67

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 69.2 bits (170), Expect = 9e-16
 Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 1/69 (1%)

Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
           ++    S    Y A+ +F ++   +L+F+ G+I++V +++  +  W+A + +G  G  P
Sbjct: 1  GSESHKWSTGEEYIAVGDFTAQQVGDLTFKKGEILLV-IEKKPDGWWIAKDAKGNEGLVP 59

Query: 89 ESYVEPCDE 97
           +Y+EP  E
Sbjct: 60 RTYLEPYSE 68

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 53.0 bits (128), Expect = 1e-09
 Identities = 15/58 (25%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           E    +  +TA     L+  +G+++++ +K   GWW     AK  K   G  P +Y++
Sbjct: 11  EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWW----IAKDAKGNEGLVPRTYLE 64

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 69.2 bits (170), Expect = 1e-15
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI--GDRTGLFPSNYV 154
             IA + ++     +++F + E I + ++ + +W+ G I    R G+FP  YV
Sbjct: 8   EAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 60

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG--QTGWFPESYVEPCDE 97
             A + F      E+SF+ G+ I   + +  +  W  G + G  + G FP +YV+    
Sbjct: 8  EAIAKFNFNGDTQVEMSFRKGERIT--LLRQVDENWYEGRIPGTSRQGIFPITYVDVIKR 65

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 60.3 bits (147), Expect = 2e-12
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
           G  P     +A   +   +  ++S  +G+ I + ++    W+EG +    +    G FP 
Sbjct: 1   GIDPFTGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSR---QGIFPI 57

Query: 273 SYVKVM 278
           +YV V+
Sbjct: 58  TYVDVI 63

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 9/64 (14%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWW--------TGTIGDRTGLFPSNYV 154
           E  +A Y Y    P ++T  + +++ +    N DWW         G   +R G  P+ YV
Sbjct: 2   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

Query: 155 VPYE 158
              +
Sbjct: 62  KKLD 65

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 56.2 bits (136), Expect = 5e-11
 Identities = 13/64 (20%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW--------LAGELRGQTGWFPESYV 92
            A+Y++  ++  E++ + GDI+   +  +    W        + G+   + G+ P +YV
Sbjct: 4  VLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

Query: 93 EPCD 96
          +  D
Sbjct: 62 KKLD 65

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 52.0 bits (125), Expect = 2e-09
 Identities = 15/63 (23%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKR---QVGWFPASYV 275
           E+   L  Y   S  ++++ +G ++ +   T   WW+ E++     +   + G+ PA+YV
Sbjct: 2   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYV 61

Query: 276 KVM 278
           K +
Sbjct: 62  KKL 64

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 8/78 (10%)

Query: 19 NAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK--QNAEPGWL 76
          +  +   W +  D      +   RA Y+FV+ + +E+SF+ GD++ + +K  Q    GWL
Sbjct: 3  SGSSGTNWASGEDD-----HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWL 57

Query: 77 AGELRGQ-TGWFPESYVE 93
             L GQ TG  P +YV+
Sbjct: 58 LASLDGQTTGLIPANYVK 75

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 82  GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-----D 136
           G +G    ++    D+          A Y + +    +++F   +++ +  KE       
Sbjct: 1   GSSGSSGTNWASGEDDHVVAR-----AEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRG 55

Query: 137 WWTGTI-GDRTGLFPSNYVVPYEAQTPAAAVDPTPAT 172
           W   ++ G  TGL P+NYV     +     ++  P++
Sbjct: 56  WLLASLDGQTTGLIPANYVKILGKRRGRKTIESGPSS 92

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 53.6 bits (129), Expect = 1e-09
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKK----TTTGWWEGEL 258
           SS ++            +A     + A S E++S   G ++ +  K       GW    L
Sbjct: 2   SSGSSGTNWASGEDDHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASL 61

Query: 259 QAKGKKRQVGWFPASYVKVMG 279
                 +  G  PA+YVK++G
Sbjct: 62  ----DGQTTGLIPANYVKILG 78

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 12/73 (16%), Positives = 18/73 (24%), Gaps = 2/73 (2%)

Query: 88  PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDR 145
                 P      +  ++      Y S +     F + E + V   E  WW        R
Sbjct: 2   SSGSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISDEGGWWKAISLSTGR 61

Query: 146 TGLFPSNYVVPYE 158
               P   V    
Sbjct: 62  ESYIPGICVARVS 74

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 54.0 bits (130), Expect = 5e-10
 Identities = 10/71 (14%), Positives = 22/71 (30%), Gaps = 3/71 (4%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTG 85
          +         +      + ++ S +     F+ G+ + V +       W A  L  G+  
Sbjct: 6  SGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRV-ISDEGG-WWKAISLSTGRES 63

Query: 86 WFPESYVEPCD 96
          + P   V    
Sbjct: 64 YIPGICVARVS 74

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 4/78 (5%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           SS ++     P+G   +   VL+ Y +         RG+ + +      GWW+    + G
Sbjct: 2   SSGSSGPLPNPEGLDSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTG 60

Query: 263 KKRQVGWFPASYVKVMGG 280
              +  + P   V  + G
Sbjct: 61  ---RESYIPGICVARVSG 75

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPAAA 165
               PY +    ++T  + +++ +    N DWW   + DR G  P+ YV   ++ T    
Sbjct: 4   PPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKEL 62

Query: 166 V 166
           V
Sbjct: 63  V 63

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 63.9 bits (156), Expect = 1e-13
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 42  RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 101
             +  + +    E++ + GDI+ +    N    W   E+  + G+ P +YV+  D     
Sbjct: 4   PPLPPYSAGG-REVTMKKGDILTLLNSTN--KDWWKVEVNDRQGFVPAAYVKKLDS--GT 58

Query: 102 VPEYYIAAYPYDST 115
             E  +A Y Y   
Sbjct: 59  GKELVLALYDYQEK 72

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 17/58 (29%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  L PY+A   E +++ +G ++ +   T   WW+ E+  +      G+ PA+YVK +
Sbjct: 3   APPLPPYSAGGRE-VTMKKGDILTLLNSTNKDWWKVEVNDR-----QGFVPAAYVKKL 54

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 69.3 bits (170), Expect = 1e-15
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 2/66 (3%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
           + D           A+Y++ +   DE+SF P DII   ++   + GW  G  +G+ G F
Sbjct: 7  GTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITN-IEMI-DDGWWRGVCKGRYGLF 64

Query: 88 PESYVE 93
          P +YVE
Sbjct: 65 PANYVE 70

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 65.8 bits (161), Expect = 3e-14
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 96  DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           DE    +    +A Y Y +    +++F+ D++I   +  +  WW G    R GLFP+NYV
Sbjct: 10  DEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 69

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 5/79 (6%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           SS ++      +      A  L  Y A   +++S     +I   +    GWW G  +   
Sbjct: 2   SSGSSGTYDEYENDLGITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK--- 58

Query: 263 KKRQVGWFPASYVKVMGGG 281
              + G FPA+YV++   G
Sbjct: 59  --GRYGLFPANYVELRQSG 75

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 4/61 (6%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVE 93
          S    YRA+Y++  +N DEL  + GD +   V Q  + GW  G  R   + G FP +YV 
Sbjct: 5  SSGTPYRAMYQYRPQNEDELELREGDRVD--VMQQCDDGWFVGVSRRTQKFGTFPGNYVA 62

Query: 94 P 94
          P
Sbjct: 63 P 63

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 64.2 bits (157), Expect = 9e-14
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVP 156
              Y A Y Y      +L   + + + V ++ +D W+ G      + G FP NYV P
Sbjct: 7   GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQKFGTFPGNYVAP 63

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 56.9 bits (138), Expect = 4e-11
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G        +  Y   + ++L L  G  + + ++   GW+ G  +   K    G FP +Y
Sbjct: 4   GSSGTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQK---FGTFPGNY 60

Query: 275 VKVMGG 280
           V  + G
Sbjct: 61  VAPVSG 66

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 68.4 bits (168), Expect = 2e-15
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVE 93
          S    + A++ + +   +EL  Q G+ I   V    + GWL G   L G+TG FP  YV 
Sbjct: 5  SSGNMFVALHTYSAHRPEELDLQKGEGIR--VLGKYQDGWLKGLSLLTGRTGIFPSDYVI 62

Query: 94 PCDE 97
          P   
Sbjct: 63 PVSG 66

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 66.9 bits (164), Expect = 1e-14
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGT--IGDRTGLFPSNYVVP 156
              ++A + Y +  P +L   + E I V  K  D W  G   +  RTG+FPS+YV+P
Sbjct: 7   GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGRTGIFPSDYVIP 63

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G    +   L  Y+A   E+L L +G+ I +  K   GW +G     G+    G FP+ Y
Sbjct: 4   GSSGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTGR---TGIFPSDY 60

Query: 275 VKVMGG 280
           V  + G
Sbjct: 61  VIPVSG 66

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
              A+Y++ +   DE+SF P DII   ++   + GW  G  +G+ G FP +YVE
Sbjct: 10 ITAIALYDYQAAGDDEISFDPDDIITN-IEMI-DDGWWRGVCKGRYGLFPANYVE 62

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 68.0 bits (167), Expect = 3e-15
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
            IA Y Y +    +++F+ D++I   +  +  WW G    R GLFP+NYV
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCKGRYGLFPANYV 61

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 50.3 bits (121), Expect = 7e-09
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 7/67 (10%)

Query: 213 PKGKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           P G      T +A   Y A   +++S     +I   +    GWW G       K + G F
Sbjct: 2   PLGSSDLGITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVC-----KGRYGLF 56

Query: 271 PASYVKV 277
           PA+YV++
Sbjct: 57  PANYVEL 63

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 68.5 bits (168), Expect = 3e-15
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 31 DPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFP 88
            +   +  +      F ++  DE++ Q  D+++V  +   E GWL GE    G+TGWFP
Sbjct: 10 GLSSKGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ---EDGWLYGERLRDGETGWFP 66

Query: 89 ESYVEP 94
          E +   
Sbjct: 67 EDFARF 72

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 60.8 bits (148), Expect = 2e-12
 Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI--GDRTGLFPSNYVVPYEAQTPA 163
                 + + +  ++T  Q +V+ V ++E+ W  G       TG FP ++       +  
Sbjct: 20  VEITKAFFAKQADEVTLQQADVVLVLQQEDGWLYGERLRDGETGWFPEDFARFISGPSSG 79

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           S  +  Q  + KG  P+   +   + A  +++++L +  ++++ ++   GW  GE    G
Sbjct: 3   SGSSGWQGLSSKGDLPQ-VEITKAFFAKQADEVTLQQADVVLVLQQED-GWLYGERLRDG 60

Query: 263 KKRQVGWFPASYVK 276
           +    GWFP  + +
Sbjct: 61  ET---GWFPEDFAR 71

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 67.7 bits (166), Expect = 4e-15
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT--IGDRTGLFPSNYVVPYE 158
              ++A Y Y++    DL+F++ E   +      DWW         TG  PSNYV P +
Sbjct: 15  VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAPVD 73

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQT 84
          T +    G +    + A+Y++ +   D+LSF  G+     +  ++E  W        G+T
Sbjct: 4  TGTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQ--ILNSSEGDWWEARSLTTGET 61

Query: 85 GWFPESYVEPCD 96
          G+ P +YV P D
Sbjct: 62 GYIPSNYVAPVD 73

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 208 AQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQV 267
               T  G    +   L  Y A + + LS  +G+   I   +   WWE      G   + 
Sbjct: 5   GTLRTRGGTGVTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTG---ET 61

Query: 268 GWFPASYVKVM 278
           G+ P++YV  +
Sbjct: 62  GYIPSNYVAPV 72

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 67.8 bits (166), Expect = 4e-15
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 100 EVVPEYYIAAYPYDS--TEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVP 156
           +       A YPYD+   +  +++F Q+E++ V+  E  WW     +  TG+ PSNYV  
Sbjct: 2   DNFIYKAKALYPYDADDDDAYEISFEQNEILQVSDIEGRWWKARRANGETGIIPSNYVQL 61

Query: 157 YEAQTPA 163
            +     
Sbjct: 62  IDGPEEM 68

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 6/65 (9%)

Query: 40  RYRAIYEFVSRNGD--ELSFQPGDIIMVPVKQNAEPG-WLAGELRGQTGWFPESYVEPCD 96
           + +A+Y + + + D  E+SF+  +I+ V    + E   W A    G+TG  P +YV+  D
Sbjct: 7   KAKALYPYDADDDDAYEISFEQNEILQV---SDIEGRWWKARRANGETGIIPSNYVQLID 63

Query: 97  ETGEV 101
              E+
Sbjct: 64  GPEEM 68

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 218 PEIATVLAPYTATSSEQ--LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
              A  L PY A   +   +S  + +++ +       WW+   +A G   + G  P++YV
Sbjct: 5   IYKAKALYPYDADDDDAYEISFEQNEILQVSDIEG-RWWKAR-RANG---ETGIIPSNYV 59

Query: 276 KVMGG 280
           +++ G
Sbjct: 60  QLIDG 64

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 67.7 bits (166), Expect = 4e-15
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQ-TGWFPESYVEP 94
          S  R  +A+Y++ ++  DEL+F  G +I    K+    GW  G+   +   +FP +YVE 
Sbjct: 5  SSGRTVKALYDYKAKRSDELTFCRGALIHNVSKE--PGGWWKGDYGTRIQQYFPSNYVED 62

Query: 95 CDE 97
             
Sbjct: 63 ISG 65

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 64.6 bits (158), Expect = 6e-14
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-TGLFPSNYVVPYEAQ 160
                A Y Y +    +LTF +  +I+   KE   WW G  G R    FPSNYV      
Sbjct: 7   GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGTRIQQYFPSNYVEDISGP 66

Query: 161 T 161
           +
Sbjct: 67  S 67

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G        L  Y A  S++L+  RG LI    K   GWW+G+       R   +FP++Y
Sbjct: 4   GSSGRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDY----GTRIQQYFPSNY 59

Query: 275 VKVMGG 280
           V+ + G
Sbjct: 60  VEDISG 65

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 67.6 bits (166), Expect = 4e-15
 Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 3/54 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTI--GDRTGLFPSNYV 154
              IA + ++     +++F + E I + ++ + +W+ G I    R G+FP  YV
Sbjct: 8   GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSRQGIFPITYV 61

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 63.0 bits (154), Expect = 2e-13
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG--QTGWFPESYVE 93
          S      A + F      E+SF+ G+ I   + +  +  W  G + G  + G FP +YV+
Sbjct: 5  SSGGEAIAKFNFNGDTQVEMSFRKGERIT--LLRQVDENWYEGRIPGTSRQGIFPITYVD 62

Query: 94 PCDE 97
              
Sbjct: 63 VISG 66

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+      E A     +   +  ++S  +G+ I + ++    W+EG +    +    G F
Sbjct: 1   GSSGSSGGE-AIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGTSR---QGIF 56

Query: 271 PASYVKVMGG 280
           P +YV V+ G
Sbjct: 57  PITYVDVISG 66

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 68.2 bits (167), Expect = 4e-15
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG--TIGDRTGLFPSNYVVPYE 158
             ++A Y Y++T   DL+F++ E   + +    DWW         TG  PSNYV P +
Sbjct: 7   TLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTGETGYIPSNYVAPVD 64

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 61.6 bits (150), Expect = 9e-13
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVE 93
          S    + A+Y++ +    +LSF  G+     + +     W        G+TG+ P +YV 
Sbjct: 4  SGVTLFVALYDYNATRWTDLSFHKGEKFQ--ILEFGPGDWWEARSLTTGETGYIPSNYVA 61

Query: 94 PCDE 97
          P D 
Sbjct: 62 PVDS 65

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 54.7 bits (132), Expect = 3e-10
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 214 KGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPAS 273
           +G    +   L  Y AT    LS  +G+   I +     WWE      G   + G+ P++
Sbjct: 2   RGSGVTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTG---ETGYIPSN 58

Query: 274 YVKVM 278
           YV  +
Sbjct: 59  YVAPV 63

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 67.8 bits (166), Expect = 5e-15
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT--IGDRTGLFPSNYVVPYE 158
           +   + A Y Y++    DL+F++ E   +      DWW         TG  PS Y+ P +
Sbjct: 4   ISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSIYLAPVD 63

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 61.6 bits (150), Expect = 9e-13
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYV 92
          V     + A+Y++ +R  D+LSF  G+     +  ++E  W        G+TG+ P  Y+
Sbjct: 2  VQISTLFEALYDYEARTEDDLSFHKGEKFQ--ILNSSEGDWWEARSLTTGETGYIPSIYL 59

Query: 93 EPCDE 97
           P D 
Sbjct: 60 APVDR 64

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 54.3 bits (131), Expect = 4e-10
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           +   +   L  Y A + + LS  +G+   I   +   WWE      G   + G+ P+ Y+
Sbjct: 3   QISTLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTG---ETGYIPSIYL 59

Query: 276 KVM 278
             +
Sbjct: 60  APV 62

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 67.3 bits (165), Expect = 5e-15
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 4/59 (6%)

Query: 42 RAIYEFV--SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
          +AI + V  + +   L+ + GDI+ V  + N   G   GE+ G+ G FP ++V+  D  
Sbjct: 5  KAIQKRVPCAYDKTALALEVGDIVKV-TRMN-INGQWEGEVNGRKGLFPFTHVKIFDPQ 61

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 65.0 bits (159), Expect = 4e-14
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 218 PEIATVLAPYT--ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           P  A  +      A     L+L  G ++ + +    G WEGE+  +      G FP ++V
Sbjct: 1   PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGR-----KGLFPFTHV 55

Query: 276 KVM 278
           K+ 
Sbjct: 56  KIF 58

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTP 162
           I      + +   L     +++ VT+   N  W G +  R GLFP  +V  ++ Q P
Sbjct: 7   IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNP 63

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD--RTGLFPSNYVVPYEAQTPA 163
           +A Y +      +L+F + E I + +K N +W+ G I    R G+FP++YV         
Sbjct: 21  VAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTGRQGIFPASYVQVSREPRLR 80

Query: 164 AAVDPTPAT 172
              D  P++
Sbjct: 81  LCDDSGPSS 89

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 62.1 bits (151), Expect = 9e-13
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 32  PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPE 89
              V EY    A Y F      ELSF+ G+ I +  K N    W  G +   G+ G FP 
Sbjct: 11  TYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVN--ENWYEGRITGTGRQGIFPA 68

Query: 90  SYVEPCDETGEVVPE 104
           SYV+   E    + +
Sbjct: 69  SYVQVSREPRLRLCD 83

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 60.1 bits (146), Expect = 4e-12
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 3/76 (3%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           SS ++ +  T +  +   A     +      +LS  +G+ I + +K    W+EG +   G
Sbjct: 2   SSGSSGKPPTYQVLEYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGTG 61

Query: 263 KKRQVGWFPASYVKVM 278
              + G FPASYV+V 
Sbjct: 62  ---RQGIFPASYVQVS 74

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 67.3 bits (165), Expect = 6e-15
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 158
           +  +A Y Y      DL   + +  ++ ++ N  WW     + + G  PSNYV   E
Sbjct: 9   KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 61.1 bits (149), Expect = 9e-13
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPES 90
              SE ++  A+Y+++  N ++L  + GD     + + +   W     + GQ G+ P +
Sbjct: 2  SMSTSELKKVVALYDYMPMNANDLQLRKGDEYF--ILEESNLPWWRARDKNGQEGYIPSN 59

Query: 91 YVEPCDET 98
          YV   +++
Sbjct: 60 YVTEAEDS 67

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+    + +    L  Y   ++  L L +G    I +++   WW        K  Q G+ 
Sbjct: 1   GSMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD----KNGQEGYI 56

Query: 271 PASYVK 276
           P++YV 
Sbjct: 57  PSNYVT 62

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 67.4 bits (165), Expect = 6e-15
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW------TGTIGDRTGLFPSNYVVPY 157
             Y+  + + S    +L+F   +V +V +KE  WW              G  P NY+   
Sbjct: 11  PKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGYVPHNYLAER 70

Query: 158 E 158
           E
Sbjct: 71  E 71

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 57.8 bits (140), Expect = 2e-11
 Identities = 13/67 (19%), Positives = 24/67 (35%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGW 269
               +         L  + + + E+LS   G +  + +K    WW   L   G     G+
Sbjct: 2   VSRDQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEEQWWWATLLDEAGGAVAQGY 61

Query: 270 FPASYVK 276
            P +Y+ 
Sbjct: 62  VPHNYLA 68

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 20/74 (27%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-----RG 82
           S D   +     Y  +++F SR  +ELSF+ GD+    V +  E  W A  L       
Sbjct: 2  VSRDQAHLGPK--YVGLWDFKSRTDEELSFRAGDVFH--VARKEEQWWWATLLDEAGGAV 57

Query: 83 QTGWFPESYVEPCD 96
            G+ P +Y+   +
Sbjct: 58 AQGYVPHNYLAERE 71

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 67.6 bits (165), Expect = 7e-15
 Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 6/91 (6%)

Query: 8  VANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMV-- 65
          + +    ++  +    + +  S   T       + A++++ +   +EL+ + GD + V  
Sbjct: 1  MHHHHHHSSGVDLGTENLYFQSMGTTPAGPV--WTAVFDYEAAGDEELTLRRGDRVQVLS 58

Query: 66 -PVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
               + + GW  G+L  G+ G FP +YV P
Sbjct: 59 QDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP 89

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 65.6 bits (160), Expect = 4e-14
 Identities = 18/83 (21%), Positives = 31/83 (37%), Gaps = 7/83 (8%)

Query: 81  RGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK------E 134
                      +             + A + Y++    +LT  + + + V  +      +
Sbjct: 7   HSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGD 66

Query: 135 NDWWTGTIGD-RTGLFPSNYVVP 156
             WWTG +   R G+FPSNYV P
Sbjct: 67  EGWWTGQLPSGRVGVFPSNYVAP 89

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 9/89 (10%)

Query: 192 SGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT 251
                S   D  +               + T +  Y A   E+L+L RG  + +  +   
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMGTTPAGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCA 62

Query: 252 -----GWWEGELQAKGKKRQVGWFPASYV 275
                GWW G+L       +VG FP++YV
Sbjct: 63  VSGDEGWWTGQL----PSGRVGVFPSNYV 87

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 67.0 bits (164), Expect = 9e-15
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD-RTGLFPSNYVVPYEAQT 161
              +A Y Y +    +LT ++ ++I V  K   DWW G+IG  + G FP+N+V       
Sbjct: 7   PTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIGKGQEGYFPANHVASETLYQ 66

Query: 162 P 162
            
Sbjct: 67  E 67

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 65.1 bits (159), Expect = 4e-14
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 35  VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE 93
           V       A+Y++ +   DEL+   GDII V  K      W  G + +GQ G+FP ++V 
Sbjct: 3   VDTAPTVVALYDYTANRSDELTIHRGDIIRVFFKD--NEDWWYGSIGKGQEGYFPANHVA 60

Query: 94  PCDETGEV 101
                 E+
Sbjct: 61  SETLYQEL 68

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 53.9 bits (130), Expect = 5e-10
 Identities = 22/61 (36%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 218 PEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
               TV+A   YTA  S++L++ RG +I +  K    WW G +     K Q G+FPA++V
Sbjct: 4   DTAPTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG----KGQEGYFPANHV 59

Query: 276 K 276
            
Sbjct: 60  A 60

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 67.5 bits (165), Expect = 9e-15
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 20 APAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE 79
            +    +    P     + +        + +   L+ + GDI+ V  + N   G   GE
Sbjct: 4  GSSGPLPSTQNGPV----FAKAIQKRVPCAYDKTALALEVGDIVKV-TRMN-INGQWEGE 57

Query: 80 LRGQTGWFPESYVEPCDE 97
          + G+ G FP ++V+  D 
Sbjct: 58 VNGRKGLFPFTHVKIFDP 75

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 62.9 bits (153), Expect = 4e-13
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPA 163
           I      + +   L     +++ VT+   N  W G +  R GLFP  +V  ++ Q P 
Sbjct: 22  IQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNGRKGLFPFTHVKIFDPQNPD 79

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 62.1 bits (151), Expect = 7e-13
 Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 7/78 (8%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYT--ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQA 260
            S  ++         P  A  +      A     L+L  G ++ + +    G WEGE+  
Sbjct: 1   GSSGSSGPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG 60

Query: 261 KGKKRQVGWFPASYVKVM 278
           +      G FP ++VK+ 
Sbjct: 61  R-----KGLFPFTHVKIF 73

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 66.6 bits (163), Expect = 1e-14
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 42  RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEPCDETGE 100
           +A++++ ++  DEL+F    II    KQ  E GW  G+  G+   WFP +YVE       
Sbjct: 10  KALFDYKAQREDELTFIKSAIIQNVEKQ--EGGWWRGDYGGKKQLWFPSNYVEEMVNPEG 67

Query: 101 VVPE 104
           +  +
Sbjct: 68  IHRD 71

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 65.0 bits (159), Expect = 4e-14
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 2/65 (3%)

Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGL-FPSNYVVPYEA 159
                 A + Y +    +LTF +  +I   +K+   WW G  G +  L FPSNYV     
Sbjct: 5   FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMVN 64

Query: 160 QTPAA 164
                
Sbjct: 65  PEGIH 69

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+P  K       L  Y A   ++L+  +  +I   +K   GWW G+       ++  WF
Sbjct: 1   GSPTFK--CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY----GGKKQLWF 54

Query: 271 PASYVKVM 278
           P++YV+ M
Sbjct: 55  PSNYVEEM 62

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 66.2 bits (162), Expect = 1e-14
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 5/70 (7%)

Query: 37  EYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVE 93
           +  ++ A Y+F  S +  EL  + GDI+ +   ++   GW   +L    + GW P +Y+ 
Sbjct: 1   KDPKFEAAYDFPGSGSSSELPLKKGDIVFI--SRDEPSGWSLAKLLDGSKEGWVPTAYMT 58

Query: 94  PCDETGEVVP 103
           P  +T   VP
Sbjct: 59  PYKDTRNTVP 68

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 62.3 bits (152), Expect = 4e-13
 Identities = 13/65 (20%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 106 YIAAYPYD-STEPGDLTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYVVPYEAQT 161
           + AAY +  S    +L   + +++++++   + W    +  G + G  P+ Y+ PY+   
Sbjct: 5   FEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTR 64

Query: 162 PAAAV 166
               V
Sbjct: 65  NTVPV 69

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 54.6 bits (132), Expect = 3e-10
 Identities = 14/61 (22%), Positives = 26/61 (42%), Gaps = 4/61 (6%)

Query: 217 KPEIATVLAPYTATSSE-QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           K         +  + S  +L L +G ++ I +   +GW   +L    K+   GW P +Y+
Sbjct: 1   KDPKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDGSKE---GWVPTAYM 57

Query: 276 K 276
            
Sbjct: 58  T 58

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 66.1 bits (162), Expect = 1e-14
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGL-FPSNYV 154
               A + Y +    +LTF +  +I   +K++  WW G  G +  L FPSNYV
Sbjct: 4   SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYGGKKQLWFPSNYV 56

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 64.9 bits (159), Expect = 3e-14
 Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 3/54 (5%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEP 94
          +A++++ ++  DEL+F    II    KQ  + GW  G+  G+   WFP +YVE 
Sbjct: 7  KALFDYKAQREDELTFTKSAIIQNVEKQ--DGGWWRGDYGGKKQLWFPSNYVEE 58

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 52.6 bits (127), Expect = 9e-10
 Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 4/58 (6%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
              L  Y A   ++L+ ++  +I   +K   GWW G+       ++  WFP++YV+ M
Sbjct: 6   VKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDY----GGKKQLWFPSNYVEEM 59

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 72.5 bits (176), Expect = 1e-14
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 38  YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP 94
             R RA+Y++  +  DELSF+ GD +   ++   E GW  G L  GQ G +P +YVE 
Sbjct: 428 EVRVRALYDYEGQEHDELSFKAGDELTK-MEDEDEQGWCKGRLDNGQVGLYPANYVEA 484

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 68.7 bits (166), Expect = 3e-13
 Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 58  QPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEP 117
           +             +           +           D+          A Y Y+  E 
Sbjct: 383 KNVSSYEKTQSYPTDWSDDESNNPFSSTDANGDSNPFDDDATSGTEVRVRALYDYEGQEH 442

Query: 118 GDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 154
            +L+F   + +   +   E  W  G + + + GL+P+NYV
Sbjct: 443 DELSFKAGDELTKMEDEDEQGWCKGRLDNGQVGLYPANYV 482

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 6/198 (3%)

Query: 82  GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGT 141
           G    +P+      D    +       A    +    + T +Q      +   N      
Sbjct: 293 GMAMNWPQFEEWSADLNRTLSRREKKKATDGVTLTGINQTGDQSLPSKPSSTLNVPSNPA 352

Query: 142 IGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPD 201
              ++    + +    +  +  +  D T A  V     T     T  S     +   + D
Sbjct: 353 QSAQSQSSYNPFEDEDDTGSTVSEKDDTKAKNVSSYEKT-QSYPTDWSDDESNNPFSSTD 411

Query: 202 FSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIM-IRKKTTTGWWEGELQA 260
            +  +                 L  Y     ++LS   G  +  +  +   GW +G L  
Sbjct: 412 ANGDSNPFDDDATSGTEVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRL-- 469

Query: 261 KGKKRQVGWFPASYVKVM 278
                QVG +PA+YV+ +
Sbjct: 470 --DNGQVGLYPANYVEAI 485

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          S  +  + +Y+F +RN +ELS    +++   V ++    W      GQ G+ P + +  
Sbjct: 5  SSGKYVKILYDFTARNANELSVLKDEVLE--VLEDGRQWWKLRSRSGQAGYVPCNILGE 61

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 63.8 bits (156), Expect = 1e-13
 Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 1/55 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPY 157
           +Y    Y + +    +L+  +DEV+ V +    WW   +   + G  P N +   
Sbjct: 8   KYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRSRSGQAGYVPCNILGEA 62

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 46.9 bits (112), Expect = 1e-07
 Identities = 11/66 (16%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G   +   +L  +TA ++ +LS+ + +++ + +     W         +  Q G+ P + 
Sbjct: 4   GSSGKYVKILYDFTARNANELSVLKDEVLEVLEDGRQWWKLRS-----RSGQAGYVPCNI 58

Query: 275 VKVMGG 280
           +    G
Sbjct: 59  LGEASG 64

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 66.3 bits (162), Expect = 2e-14
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
          S+  +G     R    +     + D L  + GDII + + +    G   G L  + G F 
Sbjct: 2  SSGSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDI-ISKP-PMGTWMGLLNNKVGTFK 59

Query: 89 ESYVEPCDE 97
            YV+    
Sbjct: 60 FIYVDVLSS 68

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAA 164
              +     +   L   + ++I +  K     W G + ++ G F   YV    +   + 
Sbjct: 15  HTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNKVGTFKFIYVDVLSSGPSSG 73

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 55.9 bits (135), Expect = 8e-11
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 7/71 (9%)

Query: 213 PKGKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
                   A V      +   ++ L L +G +I I  K   G W G L  K     VG F
Sbjct: 4   GSSGFCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLNNK-----VGTF 58

Query: 271 PASYVKVMGGG 281
              YV V+  G
Sbjct: 59  KFIYVDVLSSG 69

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD--RTGLFPSNYV 154
           +  A Y YD+ E  +LTF +++ I   +  + DWW G +      GLFPSNYV
Sbjct: 2   WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 61.8 bits (151), Expect = 4e-13
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 96
           A Y++ +   +EL+F   D I+    +  +  W  GEL   G  G FP +YV   +
Sbjct: 4  TAEYDYDAAEDNELTFVENDKIINI--EFVDDDWWLGELEKDGSKGLFPSNYVSLGN 58

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 56.8 bits (138), Expect = 3e-11
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           AT    Y A    +L+      I+  +     WW GEL+  G     G FP++YV + 
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDG---SKGLFPSNYVSLG 57

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 66.2 bits (162), Expect = 2e-14
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 99  GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGD-RTGLFPSNYV 154
           G  V       YP+ S    +L F + E + V +K   + +WW       + GL P NYV
Sbjct: 2   GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61

Query: 155 VPYE 158
           V   
Sbjct: 62  VVLS 65

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 62.3 bits (152), Expect = 4e-13
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDE 97
             + +Y F S   +EL+F+ G+ + V  K   +P W   +  RGQ G  P++YV    +
Sbjct: 7  HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSD 66

Query: 98 T 98
           
Sbjct: 67 G 67

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 50.7 bits (122), Expect = 6e-09
 Identities = 15/62 (24%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPASYVK 276
            +   L P+++ + E+L+  +G+ + + +K      WW+ +      + QVG  P +YV 
Sbjct: 7   HVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN----ARGQVGLVPKNYVV 62

Query: 277 VM 278
           V+
Sbjct: 63  VL 64

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 65.8 bits (161), Expect = 2e-14
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 42 RAIYEFVS--RNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
          R I + V    +   L+ + G+++ V  K N   G   GE  G+ G FP ++V   D+
Sbjct: 10 RVIQKRVPNAYDKTALALEVGELVKV-TKIN-VSGQWEGECNGKRGHFPFTHVRLLDQ 65

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 62.3 bits (152), Expect = 3e-13
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 3/55 (5%)

Query: 103 PEYYIAAYPYDST--EPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYV 154
           P Y            +   L     E++ VTK   +  W G    + G FP  +V
Sbjct: 6   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTHV 60

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 60.4 bits (147), Expect = 2e-12
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 7/63 (11%)

Query: 218 PEIATVLAPYTATSSE--QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           P  A V+      + +   L+L  G+L+ + K   +G WEGE   K      G FP ++V
Sbjct: 6   PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGK-----RGHFPFTHV 60

Query: 276 KVM 278
           +++
Sbjct: 61  RLL 63

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 158
           E  +A Y + +TE  DL   + +   + +K +  WW         G  PSNYV   +
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET 98
              A+Y+F +    +L  + G   ++ +++N    W A +  G  G+ P +YV      
Sbjct: 3  EIVVAMYDFQATEAHDLRLERGQEYII-LEKNDLHWWRARDKYGSEGYIPSNYVTGKKSN 61

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 48.8 bits (117), Expect = 3e-08
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           EI   +  + AT +  L L RGQ  +I +K    WW        K    G+ P++YV 
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD----KYGSEGYIPSNYVT 56

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 65.7 bits (161), Expect = 2e-14
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYVVPYE 158
              IA + Y + +  +L   ++E +++      WW      +RTG  PSNYV    
Sbjct: 5   VIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKL 60

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 12/63 (19%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          +E     A +++ ++   EL  +  + +   +  +++  W       +TG+ P +YVE  
Sbjct: 2  TEEVIVIAKWDYTAQQDQELDIKKNERLW--LLDDSKTWWRVRNAANRTGYVPSNYVERK 59

Query: 96 DET 98
           E 
Sbjct: 60 LEH 62

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 11/60 (18%), Positives = 27/60 (45%), Gaps = 5/60 (8%)

Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +  I      YTA   ++L + + + + +   +   WW    + +    + G+ P++YV+
Sbjct: 3   EEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSK-TWW----RVRNAANRTGYVPSNYVE 57

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 65.4 bits (160), Expect = 2e-14
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 116 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPAAAV 166
            P ++T  + +++ +    N DWW   + DR G  P+ YV   ++ T    V
Sbjct: 2   GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELV 53

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 53  DELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPY 112
            E++ + GDI+ +    N    W   E+  + G+ P +YV+  D       E  +A Y Y
Sbjct: 4   REVTMKKGDILTLLNSTN--KDWWKVEVNDRQGFVPAAYVKKLDS--GTGKELVLALYDY 59

Query: 113 DST 115
              
Sbjct: 60  QEK 62

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 50.0 bits (120), Expect = 9e-09
 Identities = 11/46 (23%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 233 EQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
            ++++ +G ++ +   T   WW+ E+  +      G+ PA+YVK +
Sbjct: 4   REVTMKKGDILTLLNSTNKDWWKVEVNDR-----QGFVPAAYVKKL 44

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 66.0 bits (161), Expect = 4e-14
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 96  DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGD-RTGLFPS 151
           +  G  V       YP+ S    +L F + E + V +K   + +WW       + GL P 
Sbjct: 10  NGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPK 69

Query: 152 NYVVPYEAQTPAAAVDPTPA 171
           NYVV              P+
Sbjct: 70  NYVVVLSDGPALHPAHSGPS 89

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 64.8 bits (158), Expect = 9e-14
 Identities = 20/80 (25%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 27  TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTG 85
           +  ++  G       + +Y F S   +EL+F+ G+ + V  K   +P W   +  RGQ G
Sbjct: 6   SGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVG 65

Query: 86  WFPESYVEPCDETGEVVPEY 105
             P++YV    +   + P +
Sbjct: 66  LVPKNYVVVLSDGPALHPAH 85

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 18/78 (23%), Positives = 38/78 (48%), Gaps = 6/78 (7%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQA 260
           SS ++  +     +   +   L P+++ + E+L+  +G+ + + +K      WW    + 
Sbjct: 2   SSGSSGLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWW----KC 57

Query: 261 KGKKRQVGWFPASYVKVM 278
           K  + QVG  P +YV V+
Sbjct: 58  KNARGQVGLVPKNYVVVL 75

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 65.0 bits (159), Expect = 5e-14
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYVVPYEA 159
              IA Y +  T   DL F + +V+ +     D  W+       R G+ P+NYV   E 
Sbjct: 12  TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 70

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 61.1 bits (149), Expect = 1e-12
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 2/69 (2%)

Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWF 87
          S             A Y F      +L F  GD++ + V    +P W   + + G+ G  
Sbjct: 2  SAIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTI-VAVTKDPNWYKAKNKVGREGII 60

Query: 88 PESYVEPCD 96
          P +YV+  +
Sbjct: 61 PANYVQKRE 69

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKK 264
           +A QA  P G +         +  T+ + L   +G ++ I   T    W++ +     K 
Sbjct: 2   SAIQASWPSGTE---CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN----KV 54

Query: 265 RQVGWFPASYVK 276
            + G  PA+YV+
Sbjct: 55  GREGIIPANYVQ 66

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 65.1 bits (158), Expect = 5e-14
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 15/74 (20%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVP-------------VKQNAEPGWLAG--EL 80
          +E  +YRA+Y++     +++    GDI+ V                +  E GWL G  E 
Sbjct: 3  AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 62

Query: 81 RGQTGWFPESYVEP 94
           G+ G FP +YVE 
Sbjct: 63 TGERGDFPGTYVEY 76

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 40.8 bits (95), Expect = 3e-05
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 224 LAPYTATSSEQLSLSRGQLIMIRKKTTT---------------GWWEGELQAKGKKRQVG 268
           L  Y     E + L  G ++ + K +                 GW  G  +  G++   G
Sbjct: 11  LYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER---G 67

Query: 269 WFPASYVKVMGGGGIS 284
            FP +YV+ +G   IS
Sbjct: 68  DFPGTYVEYIGRKKIS 83

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 14/67 (20%), Positives = 19/67 (28%), Gaps = 18/67 (26%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----------------WWTGTI--GDRTG 147
           Y A Y Y      D+  +  +++ V K                    W  G        G
Sbjct: 8   YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 67

Query: 148 LFPSNYV 154
            FP  YV
Sbjct: 68  DFPGTYV 74

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 64.6 bits (158), Expect = 5e-14
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYEA 159
           ++ +  Y + +    +L+  Q +V+ V      WW       + G  P N + PY A
Sbjct: 9   KWVLCNYDFQARNSSELSVKQRDVLEVLDDSRKWWKVRDPAGQEGYVPYNILTPYPA 65

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESY 91
          P G    +     Y+F +RN  ELS +  D++   V  ++   W   +  GQ G+ P + 
Sbjct: 2  PLGSGALKWVLCNYDFQARNSSELSVKQRDVLE--VLDDSRKWWKVRDPAGQEGYVPYNI 59

Query: 92 VEPCD 96
          + P  
Sbjct: 60 LTPYP 64

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 42.7 bits (101), Expect = 5e-06
 Identities = 10/71 (14%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G       +       + A +S +LS+ +  ++ +    +  WW    + +    Q G+ 
Sbjct: 1   GPLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVLDD-SRKWW----KVRDPAGQEGYV 55

Query: 271 PASYVKVMGGG 281
           P + +      
Sbjct: 56  PYNILTPYPAA 66

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 64.1 bits (157), Expect = 7e-14
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 3/56 (5%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLA--GELRGQTGWFPESYVE 93
            + +Y +V ++ DE++  PGD I + V ++   GW     +  G+TG  P +Y+ 
Sbjct: 3  ENKVLYAYVQKDDDEITITPGDKISL-VARDTGSGWTKINNDTTGETGLVPTTYIR 57

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWT---GTIGDRTGLFPSNYV 154
             Y Y   +  ++T    + I +  ++    WT         TGL P+ Y+
Sbjct: 6   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 56

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 48.3 bits (116), Expect = 4e-08
 Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
             VL  Y     ++++++ G  I ++ + T +GW +      G   + G  P +Y+++
Sbjct: 4   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTG---ETGLVPTTYIRI 58

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 64.2 bits (157), Expect = 8e-14
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 39 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
          RR RAI  +    + DE+SF  GD+ +V      E GW+        + G   E  VE  
Sbjct: 8  RRVRAILPYTKVPDTDEISFLKGDMFIV--HNELEDGWMWVTNLRTDEQGLIVEDLVEEV 65

Query: 96 DE 97
            
Sbjct: 66 SG 67

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 52.7 bits (127), Expect = 1e-09
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 106 YIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYE 158
             A  PY      D ++F + ++  V  + E+ W   T    D  GL   + V    
Sbjct: 10  VRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLVEEVS 66

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 47.3 bits (113), Expect = 9e-08
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 223 VLAPYTATSSE-QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG 280
            + PYT      ++S  +G + ++  +   GW         ++   G      V+ + G
Sbjct: 12  AILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQ---GLIVEDLVEEVSG 67

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 39 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC 95
          RR RAI  +    + DE+SF  GD+ +  V    E GW+        + G   E  VE  
Sbjct: 6  RRVRAILPYTKVPDTDEISFLKGDMFI--VHNELEDGWMWVTNLRTDEQGLIVEDLVEEV 63

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 4/62 (6%)

Query: 99  GEVVPEYYIAAYPYDSTEPGD-LTFNQDEVIYVTKK-ENDWWTGTI--GDRTGLFPSNYV 154
           G  +     A  PY      D ++F + ++  V  + E+ W   T    D  GL   + V
Sbjct: 1   GSHMRRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTDEQGLIVEDLV 60

Query: 155 VP 156
             
Sbjct: 61  EE 62

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 48.2 bits (115), Expect = 4e-08
 Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 218 PEIATVLAPYTATS-SEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
                 + PYT    ++++S  +G + ++  +   GW            + G      V+
Sbjct: 5   RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTD---EQGLIVEDLVE 61

Query: 277 VMG 279
            +G
Sbjct: 62  EVG 64

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 63.6 bits (155), Expect = 1e-13
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 83  QTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGT 141
           + G+ P +YV+  D       E  +A Y Y    P ++T  + +++ +    N DWW   
Sbjct: 3   RQGFVPAAYVKKLDSGTGK--ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVE 60

Query: 142 I 142
           +
Sbjct: 61  V 61

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL 80
              +      A+Y++  ++  E++ + GDI+   +  +    W   E+
Sbjct: 15 LDSGTGKELVLALYDYQEKSPREVTMKKGDILT--LLNSTNKDWWKVEV 61

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 10/47 (21%), Positives = 21/47 (44%)

Query: 212 TPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGEL 258
              G   E+   L  Y   S  ++++ +G ++ +   T   WW+ E+
Sbjct: 15  LDSGTGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV 61

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          S   + + +YEF +RN  EL+   G+ +   V  +++  WL     G++G+ P + +EP 
Sbjct: 5  SSGLKMQVLYEFEARNPRELTVVQGEKLE--VLDHSKRWWLVKNEAGRSGYIPSNILEPL 62

Query: 96 D 96
           
Sbjct: 63 S 63

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 61.5 bits (150), Expect = 8e-13
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 1/61 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-TGTIGDRTGLFPSNYVVPYEAQTP 162
                 Y +++  P +LT  Q E + V      WW       R+G  PSN + P    + 
Sbjct: 8   LKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWLVKNEAGRSGYIPSNILEPLSGPSS 67

Query: 163 A 163
            
Sbjct: 68  G 68

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 44.5 bits (106), Expect = 9e-07
 Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G       VL  + A +  +L++ +G+ + +   +   W       K +  + G+ P++ 
Sbjct: 4   GSSGLKMQVLYEFEARNPRELTVVQGEKLEVLDHSKRWWL-----VKNEAGRSGYIPSNI 58

Query: 275 VKVMGG 280
           ++ + G
Sbjct: 59  LEPLSG 64

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 63.4 bits (155), Expect = 1e-13
 Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 106 YIAAYPYD-STEPGDLTFNQDEVIYVTKKEND-WWTGTI--GDRTGLFPSNYVVPY 157
           + AAY +  S  P +L   + +VIY+T++E   W  G +  G + G  P+ Y+ P+
Sbjct: 3   FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKEGWVPTAYMKPH 58

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 61.5 bits (150), Expect = 7e-13
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 5/58 (8%)

Query: 40 RYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
           + A Y+F  S +  EL  + GD+I +   +    GW  G+L    + GW P +Y++P
Sbjct: 2  MFEAAYDFPGSGSPSELPLKKGDVIYI--TREEPSGWSLGKLLDGSKEGWVPTAYMKP 57

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 56.8 bits (138), Expect = 3e-11
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 221 ATVLAPYTATSSE-QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
                 +  + S  +L L +G +I I ++  +GW  G+L    K+   GW P +Y+K
Sbjct: 3   FEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGSKE---GWVPTAYMK 56

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCD 96
          +R    Y+F++ + DEL+ + GD + + +       W   +L   G++G  P  ++EP  
Sbjct: 7  KRGIVQYDFMAESQDELTIKSGDKVYI-LDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65

Query: 97 E 97
          +
Sbjct: 66 D 66

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 60.0 bits (146), Expect = 3e-12
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVT--KKENDWWTGTIGD--RTGLFPSNYVVPYE 158
            +  I  Y + +    +LT    + +Y+   KK  DWW   + D  ++GL P+ ++ P  
Sbjct: 6   KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEPVR 65

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPAS 273
            K  +   V   + A S ++L++  G  + I   K +  WW  +L   GK    G  PA 
Sbjct: 3   SKSKKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKS---GLVPAQ 59

Query: 274 YVKVM 278
           +++ +
Sbjct: 60  FIEPV 64

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 63.1 bits (154), Expect = 2e-13
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 5/74 (6%)

Query: 28 ASTDPTGVSEYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTG 85
           S+  +G++   + R +Y+F      +EL+   G+II V    N   GWL G+  +G+ G
Sbjct: 1  GSSGSSGMA--TKARVMYDFAAEPGNNELTVTEGEIITV-TNPNVGGGWLEGKNNKGEQG 57

Query: 86 WFPESYVEPCDETG 99
            P  YVE     G
Sbjct: 58 LVPTDYVEILPNDG 71

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 51.9 bits (125), Expect = 3e-09
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 108 AAYPYD-STEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV--VPYEAQT 161
             Y +       +LT  + E+I VT       W  G       GL P++YV  +P + + 
Sbjct: 14  VMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNNKGEQGLVPTDYVEILPNDGKD 73

Query: 162 PAA 164
           P +
Sbjct: 74  PFS 76

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 45.0 bits (107), Expect = 8e-07
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQ-LSLSRGQLIM-IRKKTTTGWWEGELQAKGKKRQV 267
             +        A V+  + A      L+++ G++I         GW EG+      K + 
Sbjct: 1   GSSGSSGMATKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNN----KGEQ 56

Query: 268 GWFPASYVKVMGGGG 282
           G  P  YV+++   G
Sbjct: 57  GLVPTDYVEILPNDG 71

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 62.5 bits (152), Expect = 3e-13
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
              + +V+   DELS   G  + V   +    GW  G   GQ GWFP +YV  
Sbjct: 4  AFVXFAYVAEREDELSLVXGSRVTV--MEXCSDGWWRGSYNGQIGWFPSNYVLE 55

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 59.1 bits (143), Expect = 4e-12
 Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
               + Y +    +L+      + V +  +D WW G+   + G FPSNYV
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQIGWFPSNYV 53

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 47.5 bits (113), Expect = 6e-08
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A V   Y A   ++LSL  G  + + +  + GWW G    +     +GWFP++YV   
Sbjct: 4   AFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYNGQ-----IGWFPSNYVLEE 56

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 94
           R    Y+F++ + DEL+ + GD + + +       W   +L   G++G  P  ++EP
Sbjct: 3  ERGIVQYDFMAESQDELTIKSGDKVYI-LDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 61.8 bits (151), Expect = 4e-13
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 4/57 (7%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVT--KKENDWWTGTIGD--RTGLFPSNYVVP 156
           E  I  Y + +    +LT    + +Y+   KK  DWW   + D  ++GL P+ ++ P
Sbjct: 3   ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKSGLVPAQFIEP 59

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 52.5 bits (127), Expect = 1e-09
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           E   V   + A S ++L++  G  + I   K +  WW  +L   GK    G  PA +++ 
Sbjct: 3   ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSGKS---GLVPAQFIEP 59

Query: 278 M 278
           +
Sbjct: 60  V 60

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 62.9 bits (153), Expect = 3e-13
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 116 EPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPV 174
            P ++T  + +++ +    N DWW   + DR G  P+ YV   ++ T    V        
Sbjct: 4   GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGTGKELVLALYDYQE 63

Query: 175 VKDTP 179
             D  
Sbjct: 64  SGDNA 68

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 57.2 bits (138), Expect = 3e-11
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 50 RNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
              E++ + GDI+ +    +    W   E+  + G+ P +YV+  D 
Sbjct: 3  MGPREVTMKKGDILTL--LNSTNKDWWKVEVNDRQGFVPAAYVKKLDS 48

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 49.1 bits (117), Expect = 3e-08
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 5/50 (10%)

Query: 229 ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A    ++++ +G ++ +   T   WW+ E+  +      G+ PA+YVK +
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDR-----QGFVPAAYVKKL 46

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 62.4 bits (152), Expect = 5e-13
 Identities = 15/73 (20%), Positives = 33/73 (45%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
          ++ +  T  +     + +Y + +   DEL+ +  +++ V    + E    A    GQ G+
Sbjct: 2  SSGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGY 61

Query: 87 FPESYVEPCDETG 99
           PE Y++    +G
Sbjct: 62 VPEKYLQFPTSSG 74

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 56.2 bits (136), Expect = 8e-11
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 98  TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK--ENDWWTGTIGD-RTGLFPSNYV 154
           T    P      Y Y +++P +LT  + EV+ V +     DW        + G  P  Y+
Sbjct: 8   TLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKVGQVGYVPEKYL 67

Query: 155 VPYEAQTPAAA 165
               +  P++ 
Sbjct: 68  QFPTSSGPSSG 78

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 15/79 (18%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKR 265
           ++ +       P    V+  Y A+  ++L++   +++ +        W     +A+ K  
Sbjct: 2   SSGSSGTLRNYPLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWV----KARNKVG 57

Query: 266 QVGWFPASYVKVMGGGGIS 284
           QVG+ P  Y++     G S
Sbjct: 58  QVGYVPEKYLQFPTSSGPS 76

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 62.5 bits (152), Expect = 6e-13
 Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 27  TASTDPTGVSEYRRYRAIYEFVSRN-GDELSFQPGDIIMV---PVKQNAEPGWLAGELR- 81
              ++P   S+    RA+Y+FV  N   E++ + GD++ +         +  W     + 
Sbjct: 3   EFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN 62

Query: 82  GQTGWFPESYVEPCDETGEVVPEY 105
           G  G+ P +Y+E      ++    
Sbjct: 63  GNIGYIPYNYIEIIKRRKKIEHVD 86

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 15/77 (19%), Positives = 30/77 (38%), Gaps = 8/77 (10%)

Query: 104 EYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYVV 155
           E+  A Y +    P  ++   + +++ +  K      ++DWW     +   G  P NY+ 
Sbjct: 15  EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIE 74

Query: 156 PYEAQTPAAAVDPTPAT 172
             + +     VD    T
Sbjct: 75  IIKRRKKIEHVDDETRT 91

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 217 KPEIATVLAPYTATSSEQ-LSLSRGQLIMIRKKT-----TTGWWEGELQAKGKKRQVGWF 270
           K E A  L  +   + E  ++L +G L+ I  K       + WW+       K   +G+ 
Sbjct: 13  KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT----KNGNIGYI 68

Query: 271 PASYVKVM 278
           P +Y++++
Sbjct: 69  PYNYIEII 76

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 62.1 bits (151), Expect = 7e-13
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTG---------TIGDRTGLFPSNY 153
           +Y++A + Y +    DL+F   + + V    +  WW                 G  PSNY
Sbjct: 8   QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67

Query: 154 VVPYE 158
           V    
Sbjct: 68  VAEDS 72

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 55.1 bits (133), Expect = 2e-10
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW---------LAGELRGQTGW 86
          S  + + A++++ +R  ++LSF+ GD +   V   +  GW           G  +   G+
Sbjct: 5  SSGQYFVALFDYQARTAEDLSFRAGDKLQ--VLDTSHEGWWLARHLEKKGTGLGQQLQGY 62

Query: 87 FPESYVEP 94
           P +YV  
Sbjct: 63 IPSNYVAE 70

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 52.8 bits (127), Expect = 1e-09
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK----KRQVGWFPASY 274
           +    L  Y A ++E LS   G  + +   +  GWW      K      ++  G+ P++Y
Sbjct: 8   QYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKGTGLGQQLQGYIPSNY 67

Query: 275 VKVMGG 280
           V    G
Sbjct: 68  VAEDSG 73

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 61.5 bits (150), Expect = 7e-13
 Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYVVPYEAQTP 162
              +A + Y + +  +L   ++E +++      WW      ++TG  PSNYV    +   
Sbjct: 8   VVVVAKFDYVAQQEQELDIKKNERLWLLDDSKSWWRVRNSMNKTGFVPSNYVERKNSARA 67

Query: 163 AAA 165
           AA 
Sbjct: 68  AAN 70

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 12/61 (19%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          +E     A +++V++   EL  +  + +   +  +++  W       +TG+ P +YVE  
Sbjct: 5  AEEVVVVAKFDYVAQQEQELDIKKNERLW--LLDDSKSWWRVRNSMNKTGFVPSNYVERK 62

Query: 96 D 96
          +
Sbjct: 63 N 63

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 41.9 bits (99), Expect = 8e-06
 Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
               +  +      Y A   ++L + + + + +   +   WW    + +    + G+ P+
Sbjct: 2   STMAEEVVVVAKFDYVAQQEQELDIKKNERLWLLDDSK-SWW----RVRNSMNKTGFVPS 56

Query: 273 SYVKVMGG 280
           +YV+    
Sbjct: 57  NYVERKNS 64

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 61.8 bits (150), Expect = 9e-13
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG-TIGDRTGLFPSNYV 154
               IA + Y + +  +L   ++E +++      WW      +RTG  PSNYV
Sbjct: 31  EVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYV 83

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 53.7 bits (129), Expect = 9e-10
 Identities = 11/66 (16%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWF 87
          +      ++E     A +++ ++   EL  +  + +   +  +++  W       +TG+ 
Sbjct: 21 SLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLW--LLDDSKTWWRVRNAANRTGYV 78

Query: 88 PESYVE 93
          P +YVE
Sbjct: 79 PSNYVE 84

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 43.7 bits (103), Expect = 3e-06
 Identities = 14/79 (17%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 199 TPDFSSFTAAQ-AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGE 257
            PD++S             +  I      YTA   ++L + + + + +    +  WW   
Sbjct: 11  NPDYNSLKKGSLVKNLHMTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWW--- 66

Query: 258 LQAKGKKRQVGWFPASYVK 276
            + +    + G+ P++YV+
Sbjct: 67  -RVRNAANRTGYVPSNYVE 84

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 62.2 bits (151), Expect = 1e-12
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNG--------DELSFQPGDIIMVPVKQNAEPGWLAG 78
          + +         R + A++++             +EL F+ G II V        G+  G
Sbjct: 6  SGTDPGAEELPARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKV-YGDKDADGFYRG 64

Query: 79 ELRGQTGWFPESYVEPCD 96
          E   + G  P + V    
Sbjct: 65 ETCARLGLIPCNMVSEIQ 82

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 60.3 bits (146), Expect = 5e-12
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 10/79 (12%)

Query: 104 EYYIAAYPYDSTEP--------GDLTFNQDEVIYVTKK--ENDWWTGTIGDRTGLFPSNY 153
             ++A + YD             +L F + ++I V      + ++ G    R GL P N 
Sbjct: 18  RIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETCARLGLIPCNM 77

Query: 154 VVPYEAQTPAAAVDPTPAT 172
           V   +A          P++
Sbjct: 78  VSEIQADDEEMMDQSGPSS 96

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
              ++P    + E+L    GQ+I +   K   G++ GE        ++G  P + V 
Sbjct: 28  PLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC-----ARLGLIPCNMVS 79

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 61.5 bits (149), Expect = 2e-12
 Identities = 17/84 (20%), Positives = 30/84 (35%), Gaps = 8/84 (9%)

Query: 27  TASTDPTGVSEYRRYRAIYEFVSRNG------DELSFQPGDIIMVPVKQNAEPGWLAGE- 79
           + ++      +     A Y +   +G       EL    G  + V      E G+  GE 
Sbjct: 6   SGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYV-YGDMDEDGFYEGEL 64

Query: 80  LRGQTGWFPESYVEPCDETGEVVP 103
           L GQ G  P ++V+   +    + 
Sbjct: 65  LDGQRGLVPSNFVDFVQDNESRLA 88

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 52.6 bits (126), Expect = 3e-09
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 103 PEYYIAAYPYDSTE------PGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNY 153
               +A Y Y+  +        +L     + +YV    ++  ++ G + D + GL PSN+
Sbjct: 17  VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNF 76

Query: 154 VVPYEAQTPAAAVDPTPAT 172
           V   +      A    P++
Sbjct: 77  VDFVQDNESRLASTSGPSS 95

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSS------EQLSLSRGQLIMIRKKTT-TGWWE 255
           SS ++  +      K  +      Y            +L L+ G+ + +       G++E
Sbjct: 2   SSGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYE 61

Query: 256 GELQAKGKKRQVGWFPASYVKVM 278
           GEL       Q G  P+++V  +
Sbjct: 62  GEL----LDGQRGLVPSNFVDFV 80

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 62.0 bits (150), Expect = 2e-12
 Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 3/55 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI---GDRTGLFPSNYV 154
             + +A Y +  +    L+    +V+ + +   DW+ G +       G+FP +++
Sbjct: 59  ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFI 113

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 57.4 bits (138), Expect = 8e-11
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 168 PTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPY 227
             P  P        +   +  SS   G  S     SS          G K      +  +
Sbjct: 16  QIPDAPPPIPKEPSNYDFSGPSSGIEGRGSSGSSGSS-------GSSGDKERHGVAIYNF 68

Query: 228 TATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
             + + QLSL  G ++ I++     W+ G L     K   G FP S++ +
Sbjct: 69  QGSGAPQLSLQIGDVVRIQETCGD-WYRGYLI--KHKMLQGIFPKSFIHI 115

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 55.5 bits (133), Expect = 4e-10
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 28  ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQT 84
           + +  +   + R   AIY F      +LS Q GD++ +   Q     W  G L   +   
Sbjct: 49  SGSSGSSGDKERHGVAIYNFQGSGAPQLSLQIGDVVRI---QETCGDWYRGYLIKHKMLQ 105

Query: 85  GWFPESYVEPCDET 98
           G FP+S++   + T
Sbjct: 106 GIFPKSFIHIKEVT 119

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 60.5 bits (147), Expect = 3e-12
 Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 5/77 (6%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGD-ELSFQPGDIIMV---PVKQNAEPGWLAGELR- 81
             ++P   S+    RA+Y+FV  N + E++ + GD++ +         +  W     + 
Sbjct: 3  EFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN 62

Query: 82 GQTGWFPESYVEPCDET 98
          G  G+ P +Y+E     
Sbjct: 63 GNIGYIPYNYIEIIKRR 79

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 56.3 bits (136), Expect = 7e-11
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 104 EYYIAAYPYDSTEPG-DLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYV 154
           E+  A Y +    P  ++   + +++ +  K      ++DWW     +   G  P NY+
Sbjct: 15  EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 73

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 44.3 bits (105), Expect = 1e-06
 Identities = 16/79 (20%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQ-LSLSRGQLIMIRKKT-----TTGWWEGELQ 259
           +   +      K E A  L  +   + E  ++L +G L+ I  K       + WW+    
Sbjct: 2   SEFGSEPIDPSKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT- 60

Query: 260 AKGKKRQVGWFPASYVKVM 278
              K   +G+ P +Y++++
Sbjct: 61  ---KNGNIGYIPYNYIEII 76

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 59.6 bits (145), Expect = 3e-12
 Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYEAQ 160
           +Y  + Y + +    +L+  +D+V+ +      WW        +G  P+N +      
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRTP 59

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 53.4 bits (129), Expect = 6e-10
 Identities = 13/56 (23%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +  ++ Y+FV+RN  ELS    D++   +  +    W      G +G+ P + ++ 
Sbjct: 2  KYAKSKYDFVARNSSELSVMKDDVLE--ILDDRRQWWKVRNASGDSGFVPNNILDI 55

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 44.5 bits (106), Expect = 7e-07
 Identities = 11/60 (18%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           + A     + A +S +LS+ +  ++ I       WW    + +      G+ P + + +M
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILDDRR-QWW----KVRNASGDSGFVPNNILDIM 56

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 59.7 bits (145), Expect = 4e-12
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 88  PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-R 145
           PE       E  E      IA Y Y + +P +L    DE  Y+       WW     +  
Sbjct: 8   PEDNRRSFQEPEE---TLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGH 64

Query: 146 TGLFPSNYV 154
            G  PS+Y+
Sbjct: 65  EGYAPSSYL 73

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 13/73 (17%), Positives = 28/73 (38%), Gaps = 1/73 (1%)

Query: 21 PAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL 80
          P   T   +       E     A+Y++ + +  EL+ +  +   + +  +    W   + 
Sbjct: 3  PLPPTPEDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYL-LDSSEIHWWRVQDK 61

Query: 81 RGQTGWFPESYVE 93
           G  G+ P SY+ 
Sbjct: 62 NGHEGYAPSSYLV 74

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
                + +  +  +   L  Y     ++L+L   +   +   +   WW    + + K   
Sbjct: 9   EDNRRSFQEPEETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWW----RVQDKNGH 64

Query: 267 VGWFPASYVK 276
            G+ P+SY+ 
Sbjct: 65  EGYAPSSYLV 74

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 59.7 bits (145), Expect = 5e-12
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYEAQ 160
               IA Y Y + +P +L   ++E   +       WW     +   G  PS+Y+V     
Sbjct: 19  ETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSPN 78

Query: 161 T 161
            
Sbjct: 79  N 79

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 56.2 bits (136), Expect = 8e-11
 Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
            +  P    E     A+Y++ + +  EL+ +  +   + +  +    W   +  G  G+
Sbjct: 8  EDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCL-LDSSEIHWWRVQDRNGHEGY 66

Query: 87 FPESYVEPCDETG 99
           P SY+       
Sbjct: 67 VPSSYLVEKSPNN 79

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 9/86 (10%)

Query: 206 TAAQAGTPKGK---KPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQA 260
           ++  +G    +   +PE   V+A   Y     ++L+L R +   +   +   WW    + 
Sbjct: 2   SSGSSGEDNRRPLWEPEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWW----RV 57

Query: 261 KGKKRQVGWFPASYVKVMGGGGISIQ 286
           + +    G+ P+SY+       +   
Sbjct: 58  QDRNGHEGYVPSSYLVEKSPNNLETY 83

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 64.6 bits (157), Expect = 5e-12
 Identities = 19/97 (19%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 190 SVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT 249
           ++S       P       A            A  L  +     ++L    G +I +   T
Sbjct: 2   AMSSSHHYSHPGGGGEQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDAT 61

Query: 250 TTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISIQ 286
              WW G +         GWFPAS+V++         
Sbjct: 62  NREWWWGRV-----ADGEGWFPASFVRLRVNQDEPAD 93

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 61.9 bits (150), Expect = 4e-11
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 42  RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV 101
            A+++ V+ +  EL F+ GD+I   V       W  G +    GWFP S+V       E 
Sbjct: 34  EALWDHVTMDDQELGFKAGDVI--EVMDATNREWWWGRVADGEGWFPASFVRLRVNQDEP 91

Query: 102 VPE 104
             +
Sbjct: 92  ADD 94

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 57.3 bits (138), Expect = 2e-09
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 96  DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYV 154
           +   +       A + + + +  +L F   +VI V    N +WW G + D  G FP+++V
Sbjct: 23  ELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVADGEGWFPASFV 82

Query: 155 VPYEAQTP-----AAAVDPTPATPVVKDTPTKSE 183
                Q       A     + A     +  +  +
Sbjct: 83  RLRVNQDEPADDDAPLAGNSGAEDGGAEAQSSKD 116

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 59.2 bits (144), Expect = 6e-12
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGW 86
           S+  +G        AIY F   +   +S   G+ + + ++++   GW       G  G+
Sbjct: 1  GSSGSSGG----HCVAIYHFEGSSEGTISMAEGEDLSL-MEEDKGDGWTRVRRKEGGEGY 55

Query: 87 FPESYVEPCDE 97
           P SY+     
Sbjct: 56 VPTSYLRVTSG 66

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 54.2 bits (131), Expect = 4e-10
 Identities = 8/52 (15%), Positives = 24/52 (46%), Gaps = 3/52 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYV 154
            +A Y ++ +  G ++  + E + + +++    W      +   G  P++Y+
Sbjct: 10  CVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRKEGGEGYVPTSYL 61

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 12/68 (17%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
             G        +  +  +S   +S++ G+ + + ++     W    + + K+   G+ P 
Sbjct: 2   SSGSSGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGW---TRVRRKEGGEGYVPT 58

Query: 273 SYVKVMGG 280
           SY++V  G
Sbjct: 59  SYLRVTSG 66

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 60.2 bits (146), Expect = 6e-12
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT--IGDRTGLFPSNYVVPYE 158
              ++A Y Y++    DL+F + E   +    E DWW        ++G  PSNYVVP +
Sbjct: 27  VTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATGKSGYIPSNYVVPAD 85

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 5/85 (5%)

Query: 194 GSRSGTPDFSSFTAAQAGTPKGKKPEIATVLA--PYTATSSEQLSLSRGQLIMIRKKTTT 251
           GS   +   SSF+   +  P G    +   +A   Y A ++E LS  +G+   I   T  
Sbjct: 1   GSSGSSGASSSFSVVSSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQIINNTEG 60

Query: 252 GWWEGELQAKGKKRQVGWFPASYVK 276
            WWE    A GK    G+ P++YV 
Sbjct: 61  DWWEARSIATGKS---GYIPSNYVV 82

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 59.4 bits (144), Expect = 1e-11
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTG 85
          ++S           + A+Y++ +R  ++LSF+ G+   + +       W A  +  G++G
Sbjct: 16 SSSYPTGLTGGVTIFVALYDYEARTTEDLSFKKGERFQI-INNTEGDWWEARSIATGKSG 74

Query: 86 WFPESYVEPCD 96
          + P +YV P D
Sbjct: 75 YIPSNYVVPAD 85

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 60.2 bits (146), Expect = 7e-12
 Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 5/66 (7%)

Query: 42  RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDET 98
             +Y+F +   DEL+   G+ + +    N    W   +     G  G  P  +V   D  
Sbjct: 9   IVLYDFKAEKADELTTYVGENLFICAHHN--CEWFIAKPIGRLGGPGLVPVGFVSIIDIA 66

Query: 99  GEVVPE 104
                 
Sbjct: 67  TGYATG 72

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 59.0 bits (143), Expect = 2e-11
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 9/100 (9%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT---GLFPSNYVVPYEAQ 160
           Y I  Y + + +  +LT    E +++    N +W+      R    GL P  +V   +  
Sbjct: 7   YAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPIGRLGGPGLVPVGFVSIIDIA 66

Query: 161 TPAAAVDPTPATPVVKDTPTKSEGVTRT-----SSVSGGS 195
           T  A  +         + PT  E  +       S++S GS
Sbjct: 67  TGYATGNDVIEDIKSVNLPTVQEWKSNIARYKASNISLGS 106

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 12/58 (20%), Positives = 25/58 (43%), Gaps = 2/58 (3%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A VL  + A  +++L+   G+ + I       W+  +    G+    G  P  +V ++
Sbjct: 8   AIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKP--IGRLGGPGLVPVGFVSII 63

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 59.1 bits (143), Expect = 9e-12
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 12/78 (15%)

Query: 27 TASTDPTGVSEYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG--- 82
          ++   P G     + RA+ +F    +   L+ + GD+I V ++Q+   G   G +     
Sbjct: 10 SSGLVPRGS---LKVRALKDFWNLHDPTALNVRAGDVITV-LEQH-PDGRWKGHIHESQR 64

Query: 83 ---QTGWFPESYVEPCDE 97
             + G+FP   VE   +
Sbjct: 65 GTDRIGYFPPGIVEVVSK 82

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 55.6 bits (134), Expect = 2e-10
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 8/58 (13%)

Query: 105 YYIAAYPY-DSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI------GDRTGLFPSNYV 154
              A   + +  +P  L     +VI V ++  +  W G I       DR G FP   V
Sbjct: 20  KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIV 77

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 228 TATSSEQLSLSRGQLIMIRKKTTTGWWEGELQ-AKGKKRQVGWFPASYVKVM 278
                  L++  G +I + ++   G W+G +  ++    ++G+FP   V+V+
Sbjct: 29  NLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVV 80

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 12/66 (18%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
             G   ++   +A Y            G  + + ++   GWW  ++    K  + GW P+
Sbjct: 5   SSGNLKDVYVSIADYEGDEET-AGFQEGVSMEVLERNPNGWWYCQILDGVKPFK-GWVPS 62

Query: 273 SYVKVM 278
           +Y++  
Sbjct: 63  NYLEKK 68

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGD----RTGLFPSNYVVP 156
           + + Y++   Y+  E     F +   + V ++  N WW   I D      G  PSNY+  
Sbjct: 9   LKDVYVSIADYEGDE-ETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEK 67

Query: 157 YEA 159
             +
Sbjct: 68  KNS 70

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 49.8 bits (119), Expect = 1e-08
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 30 TDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW----LAGELRGQTG 85
          +  +  +    Y +I ++     +   FQ G  + V +++N   GW    +   ++   G
Sbjct: 2  SSGSSGNLKDVYVSIADYEGDE-ETAGFQEGVSMEV-LERN-PNGWWYCQILDGVKPFKG 58

Query: 86 WFPESYVEPCDET 98
          W P +Y+E  +  
Sbjct: 59 WVPSNYLEKKNSG 71

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD--RTGLFPSNYVVPYEA 159
            I    +   +PG+L F + +V+ + +   +  W+        + GL  +  +     
Sbjct: 20  CITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSGQEGLLAAGALRERSG 77

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 52.4 bits (126), Expect = 2e-09
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQT 84
          +        +   +     E       EL+F+ GD++ + ++      W   +    GQ 
Sbjct: 6  SGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTI-LEACENKSWYRVKHHTSGQE 64

Query: 85 GWFPESYVEP 94
          G      +  
Sbjct: 65 GLLAAGALRE 74

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 4/79 (5%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAK 261
           SS ++ +  T +            +T     +L+  +G ++ I +      W+  +    
Sbjct: 2   SSGSSGRMPTRRWAPGTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTS 61

Query: 262 GKKRQVGWFPASYVKVMGG 280
           G   Q G   A  ++   G
Sbjct: 62  G---QEGLLAAGALRERSG 77

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 58.4 bits (141), Expect = 3e-11
 Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 42  RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDET 98
             +YEF +   DEL   PG+ + +    +    W   +     G  G  P SYV   D  
Sbjct: 7   VTLYEFKAERDDELDVSPGENLSICAHYD--YEWFIAKPINRLGGPGLVPVSYVRIIDLM 64

Query: 99  GEVVPEYYIAAYPYDSTEP 117
                            + 
Sbjct: 65  DPAKYASVDTYDREQVMKI 83

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 56.9 bits (137), Expect = 1e-10
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRT---GLFPSNYVVPYE 158
           P + +  Y + +    +L  +  E + +    + +W+     +R    GL P +YV   +
Sbjct: 3   PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPINRLGGPGLVPVSYVRIID 62

Query: 159 AQTPAAAVDPTPATP 173
              PA          
Sbjct: 63  LMDPAKYASVDTYDR 77

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           P  A  L  + A   ++L +S G+ + I       W+  +     +    G  P SYV++
Sbjct: 3   PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKP--INRLGGPGLVPVSYVRI 60

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 59.7 bits (144), Expect = 4e-11
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD---RTGLFPSNYVVPYEAQ 160
            + +A Y +  +    L+    +V+ + +   DW+ G +       G+FP +++   E  
Sbjct: 18  RHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGDWYRGYLIKHKMLQGIFPKSFIHIKEVT 77

Query: 161 TPAAAVDPTPA---TPVVKDTPT 180
                          P+ ++  T
Sbjct: 78  VEKRRNTENIIPAEIPLAQEVTT 100

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 52.0 bits (124), Expect = 2e-08
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 6/75 (8%)

Query: 35  VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESY 91
             + R   AIY F      +LS Q GD++ +         W  G L   +   G FP+S+
Sbjct: 14  ADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQET---CGDWYRGYLIKHKMLQGIFPKSF 70

Query: 92  VEPCDETGEVVPEYY 106
           +   + T E      
Sbjct: 71  IHIKEVTVEKRRNTE 85

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 50.9 bits (121), Expect = 5e-08
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 3/76 (3%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           SS ++  A   K  K      +  +  + + QLSL  G ++ I++     W+ G L    
Sbjct: 2   SSGSSGMAPWRKADKERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCGD-WYRGYLI--K 58

Query: 263 KKRQVGWFPASYVKVM 278
            K   G FP S++ + 
Sbjct: 59  HKMLQGIFPKSFIHIK 74

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 56.6 bits (137), Expect = 4e-11
 Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 5/58 (8%)

Query: 42 RAIYEFVSRNGD-ELSFQPGDIIMV---PVKQNAEPGWLAGELR-GQTGWFPESYVEP 94
          RA+Y+FV  N + E++ + GD++ +         +  W     + G  G+ P +Y+E 
Sbjct: 11 RALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEI 68

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 56.2 bits (136), Expect = 6e-11
 Identities = 11/59 (18%), Positives = 24/59 (40%), Gaps = 8/59 (13%)

Query: 104 EYYIAAYPYDSTEP-GDLTFNQDEVIYVTKK------ENDWWTGTIGD-RTGLFPSNYV 154
            +  A Y +    P  ++   + +++ +  K      ++DWW     +   G  P NY+
Sbjct: 8   HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 66

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQ-LSLSRGQLIMIRKKT-----TTGWWEGELQAKGKK 264
           G+        A  L  +   + E  ++L +G L+ I  K       + WW+       K 
Sbjct: 1   GSHHHHH-HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT----KN 55

Query: 265 RQVGWFPASYVKVM 278
             +G+ P +Y++++
Sbjct: 56  GNIGYIPYNYIEII 69

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 56.5 bits (136), Expect = 7e-11
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 94
          + Y  I       G  L   PGDI+ +  K  AE  W  G      + GWFP + V P
Sbjct: 19 QEYYGIPPPPGAFGGFLRLNPGDIVEL-TKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 51.9 bits (124), Expect = 3e-09
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%)

Query: 101 VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE--NDWWTG--TIGDRTGLFPSNYVVP 156
            V + Y    P      G L  N  +++ +TK E  ++WW G  T  +  G FP N V P
Sbjct: 16  EVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHP 75

Query: 157 Y 157
           Y
Sbjct: 76  Y 76

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 45.4 bits (107), Expect = 7e-07
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGW 269
           G PK +  +    + P        L L+ G ++ + + +    WWEG   A  +   VGW
Sbjct: 11  GLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTATNE---VGW 67

Query: 270 FPASYVK 276
           FP + V 
Sbjct: 68  FPCNRVH 74

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 59.0 bits (143), Expect = 4e-10
 Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 8/103 (7%)

Query: 58  QPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEP 117
            P + +  PV  + EP                S         E  P  ++A Y + ++  
Sbjct: 4   DPSEALQRPVASDFEPQ------GLSEAARWNSKENLLAGPSENDPNLFVALYDFVASGD 57

Query: 118 GDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYVVPYE 158
             L+  + E + V    ++  W      +  G  PSNY+ P  
Sbjct: 58  NTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITPVN 100

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 1/61 (1%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           ++   + A+Y+FV+   + LS   G+ + V +  N    W   + +   GW P +Y+ P 
Sbjct: 41  NDPNLFVALYDFVASGDNTLSITKGEKLRV-LGYNHNGEWCEAQTKNGQGWVPSNYITPV 99

Query: 96  D 96
           +
Sbjct: 100 N 100

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 47.5 bits (113), Expect = 2e-06
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 177 DTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLS 236
             P+++      S       S    ++S     AG P    P +   L  + A+    LS
Sbjct: 3   MDPSEALQRPVASDFEPQGLSEAARWNSKENLLAG-PSENDPNLFVALYDFVASGDNTLS 61

Query: 237 LSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           +++G+ + +      G W         K   GW P++Y+ 
Sbjct: 62  ITKGEKLRVLGYNHNGEW----CEAQTKNGQGWVPSNYIT 97

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 57.5 bits (139), Expect = 8e-10
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 2/58 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
          +   +Y++ ++N DEL+F  G II V      +P W  GE+ GQ G FP +YV+   +
Sbjct: 4  QVIGMYDYTAQNDDELAFSKGQIINVL--NKEDPDWWKGEVSGQVGLFPSNYVKLTTD 59

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 54.0 bits (130), Expect = 1e-08
 Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 4/80 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGDRTGLFPSNYVVPYEAQTPA 163
             I  Y Y +    +L F++ ++I V  KE+ DWW G +  + GLFPSNYV       P 
Sbjct: 4   QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQVGLFPSNYVKLTTDMDP- 62

Query: 164 AAVDPTPATPVVKDTPTKSE 183
                  +   + D  T +E
Sbjct: 63  --SQQWCSDLHLLDMLTPTE 80

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 20/58 (34%), Positives = 34/58 (58%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
              +  YTA + ++L+ S+GQ+I +  K    WW+GE+  +     VG FP++YVK+ 
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVSGQ-----VGLFPSNYVKLT 57

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)

Query: 98  TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWT--GTIGDRTGLFPSNYVV 155
            G  +    +A Y Y++    DL+F + + + V ++  +WW        + G  PSNYV 
Sbjct: 3   MGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVA 62

Query: 156 PYE 158
             +
Sbjct: 63  RVD 65

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 32 PTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPES 90
            G        A+Y++ + + ++LSFQ GD ++  V + +   W A  L   + G+ P +
Sbjct: 2  AMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMV--VLEESGEWWKARSLATRKEGYIPSN 59

Query: 91 YVEPCD 96
          YV   D
Sbjct: 60 YVARVD 65

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP 94
          + Y  I       G  L   PGDI+ +  K  AE  W  G      + GWFP + V P
Sbjct: 11 QEYYGIPPPPGAFGPFLRLNPGDIVEL-TKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTG--TIGDRTGLFPSNYVVPY 157
           Y    P        L  N  +++ +TK E +  WW G  T  +  G FP N V PY
Sbjct: 13  YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY 68

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 48.0 bits (114), Expect = 6e-08
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVG 268
           +  PK +  +    + P        L L+ G ++ + + +    WWEG   A  +   VG
Sbjct: 2   SHMPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNE---VG 58

Query: 269 WFPASYVK 276
           WFP + V 
Sbjct: 59  WFPCNRVH 66

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKE----NDWWTGTIGD--------RTGLFPSNYV 154
           +A   Y + +   LT ++ +V+YV  K       +W G++          R G FPS+ V
Sbjct: 26  VALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIV 85

Query: 155 VPYEAQTPAAAVDPT 169
              +   P      T
Sbjct: 86  REDQTLKPGKVDVKT 100

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 50.8 bits (121), Expect = 1e-08
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 40  RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE-PGWLAGELRGQ--------TGWFPES 90
              A+ ++++ +   L+   G ++ V  K       +  G ++G          G+FP S
Sbjct: 24  MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83

Query: 91  YVEPCDETGEVVPEYYIAAYPYD 113
            V           +  +    +D
Sbjct: 84  IVREDQTLKP--GKVDVKTDKWD 104

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 45.8 bits (108), Expect = 9e-07
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKK---TTTGWWEGEL---QAKGKKRQVGWFPAS 273
           +A  L  Y A     L++ RGQ++ +  K       +W G +          ++G+FP+S
Sbjct: 24  MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSS 83

Query: 274 YVKV 277
            V+ 
Sbjct: 84  IVRE 87

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 56.0 bits (134), Expect = 4e-09
 Identities = 23/83 (27%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 16  AWDNAPAADTWTASTDPTGVSE--YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP 73
              +  A+  + +  D             AIY    R  DE+  +PGDII   V  N   
Sbjct: 418 QTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPGDIIG--VAGNHWD 475

Query: 74  GWLAGELR--GQTGWFPESYVEP 94
           G+  G  R  G+TG +P   V  
Sbjct: 476 GYSKGVNRKLGRTGLYPSYKVRE 498

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 48.7 bits (115), Expect = 1e-06
 Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 3/97 (3%)

Query: 180 TKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSR 239
           T S  V R +     +       +  +        G+       +  +   +++++ +  
Sbjct: 404 TFSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEP 463

Query: 240 GQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           G +I +      G+ +G  +  G+    G +P+  V+
Sbjct: 464 GDIIGVAGNHWDGYSKGVNRKLGRT---GLYPSYKVR 497

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} Length = 526

 Score = 46.0 bits (108), Expect = 8e-06
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 69  QNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPE---YYIAAYPYDSTEPGDLTFNQD 125
            +++   +A E+         +     D+      +     IA Y +      ++     
Sbjct: 405 FSSQVCRVAYEIMQTLHPDASANFHSLDDIYYFGGQNAHNQIAIYAHQPRTADEIPMEPG 464

Query: 126 EVIYVTKKEND-WWTGTIGD--RTGLFPSNYVVP 156
           ++I V     D +  G      RTGL+PS  V  
Sbjct: 465 DIIGVAGNHWDGYSKGVNRKLGRTGLYPSYKVRE 498

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 54.5 bits (130), Expect = 6e-09
 Identities = 15/85 (17%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 91  YVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVT-KKENDWWTGTIGD-RTGL 148
                    +   EY  A + ++  +  DL F + +++ +  K E  WW     + + G+
Sbjct: 124 RQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGM 183

Query: 149 FPSNYVVPYEAQTPAAAVDPTPATP 173
            P  YV  Y   + + +        
Sbjct: 184 IPVPYVEKYRPASASVSALIGGNQE 208

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 51.8 bits (123), Expect = 4e-08
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 26  WTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG 85
              S       E    RA+++F   + ++L F+ GDI+ +   +  E  W A +  G+ G
Sbjct: 124 RQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRI-RDKPEEQWWNAEDSEGKRG 182

Query: 86  WFPESYVEP 94
             P  YVE 
Sbjct: 183 MIPVPYVEK 191

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 4/52 (7%)

Query: 227 YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           +     E L   +G ++ IR K    WW  E      + + G  P  YV+  
Sbjct: 145 FNGNDEEDLPFKKGDILRIRDKPEEQWWNAED----SEGKRGMIPVPYVEKY 192

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWT--GTIGDRTGLFPSNYVVPYE 158
           ++A Y Y+S    DL+F + E + +    E DWW        +TG  PSNYV P +
Sbjct: 5   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCD 96
          + A+Y++ SR   +LSF+ G+ + + V       WLA  L  GQTG+ P +YV P D
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 51.2 bits (121), Expect = 6e-08
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 13/104 (12%)

Query: 4   SARAVANSWGDNAWDNAPAADTWTASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDII 63
           S+          A  N        A           + +A +++ + + DEL  + GD++
Sbjct: 108 SSLPAVVVETFPATVNGTVEGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVV 167

Query: 64  MVPVKQNAE---PGWLAG----------ELRGQTGWFPESYVEP 94
           +V   QN E    GWL G          +L    G FPE++ E 
Sbjct: 168 LVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTER 211

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 38.9 bits (89), Expect = 8e-04
 Identities = 13/85 (15%), Positives = 23/85 (27%), Gaps = 16/85 (18%)

Query: 88  PESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND------WWTGT 141
                    +          A + Y +T+  +L     +V+ V   +N       W  G 
Sbjct: 127 EGGSGAGRLDLPPGFMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGV 186

Query: 142 IGD----------RTGLFPSNYVVP 156
                          G+FP N+   
Sbjct: 187 KESDWNQHKKLEKCRGVFPENFTER 211

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYV--TKKENDWW-----TGTIGDRTGLFPSNYVVPYE 158
            IA Y +  T   DL F + +V+ +    K+ +W+      G    R G+ P+NYV   E
Sbjct: 14  CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVG----REGIIPANYVQKRE 69

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRGQTGWF 87
          S             A Y F      +L F  GD++ + V    +P W  A    G+ G  
Sbjct: 2  SAIQASWPSGTECIAKYNFHGTAEQDLPFCKGDVLTI-VAVTKDPNWYKAKNKVGREGII 60

Query: 88 PESYVEPCD 96
          P +YV+  +
Sbjct: 61 PANYVQKRE 69

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 19/71 (26%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKR 265
           +A QA  P G           +  T+ + L   +G ++ I   T    W    +AK K  
Sbjct: 2   SAIQASWPSGT---ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNW---YKAKNKVG 55

Query: 266 QVGWFPASYVK 276
           + G  PA+YV+
Sbjct: 56  REGIIPANYVQ 66

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 47.8 bits (113), Expect = 5e-07
 Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPY 157
            IA + Y+ +  GDL F + E + + ++  +WW        + G  P N+V   
Sbjct: 15  VIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAKA 68

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 46.6 bits (110), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTG 85
           S  P    +     A++ +   +  +L F+ G+ + +         W   +    GQ G
Sbjct: 2  GSNPPASPLQDNLVIALHSYEPSHDGDLGFEKGEQLRIL---EQSGEWWKAQSLTTGQEG 58

Query: 86 WFPESYVEPC 95
          + P ++V   
Sbjct: 59 FIPFNFVAKA 68

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 49.1 bits (117), Expect = 8e-07
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWT--GTIGDRTGLFPSNYVVPYE 158
              ++A Y Y+S    DL+F + E + +    E DWW        +TG  PSNYV P +
Sbjct: 85  VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 143

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 3/121 (2%)

Query: 156 PYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKG 215
            + A   A     TP+ P   D           ++       G     + T+ Q   P  
Sbjct: 23  VHGAGGGAFPASQTPSKPASADGHRGPSAAFAPAAAEPKLFGGFNSSDTVTSPQRAGPLA 82

Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
                   L  Y + +   LS  +G+ + I   T   WW     + G+    G+ P++YV
Sbjct: 83  GGVTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQT---GYIPSNYV 139

Query: 276 K 276
            
Sbjct: 140 A 140

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEP 94
                + A+Y++ SR   +LSF+ G+ + + V       WLA  L  GQTG+ P +YV P
Sbjct: 83  GGVTTFVALYDYESRTETDLSFKKGERLQI-VNNTEGDWWLAHSLSTGQTGYIPSNYVAP 141

Query: 95  CD 96
            D
Sbjct: 142 SD 143

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE-----NDWWTGTIGDRTGLFPSNYVVPY 157
            + + A   +++ +  D++  + +++ V KK+      + W    G   G   S+++ PY
Sbjct: 17  EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPY 76

Query: 158 EAQTPAAAVDPTPAT 172
             +   +     P++
Sbjct: 77  NPRRSHSDASSGPSS 91

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 10/62 (16%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTGWFPESYVEPCD 96
          + ++A   F +    ++S   GD++ V  K++          +     G+   S+++P +
Sbjct: 18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYN 77

Query: 97 ET 98
            
Sbjct: 78 PR 79

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus} Length = 82

 Score = 39.6 bits (92), Expect = 8e-05
 Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 3/74 (4%)

Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMI--RKKTTTGWWEGELQAKGK 263
           +    G+      E+  VL  ++A  S +LS+  GQ + +  R     GW       +  
Sbjct: 5   SPGIPGSTLSGGCELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTT-ERS 63

Query: 264 KRQVGWFPASYVKV 277
             Q G  P+S + +
Sbjct: 64  PPQEGLVPSSTLCI 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	290
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.93
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.93
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.91
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.91
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.91
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.79
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	99.79
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.87
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.87
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.75
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.75
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.68
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.68
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.67
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.67
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.65
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.64
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.64
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.61
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.6
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.6
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.59
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.59
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.59
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.59
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.58
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.58
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.58
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.58
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.58
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.58
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.58
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.58
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.57
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.57
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.57
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.57
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.57
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.57
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.57
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.57
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.57
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.57
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.57
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.57
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.56
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.56
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.56
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.56
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.56
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.56
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.56
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.56
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.56
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.56
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.55
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.55
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.55
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.55
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.55
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.55
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.55
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.55
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.55
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.55
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.55
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.54
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.54
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.54
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.54
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.54
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.54
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.54
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.54
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.54
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.54
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.54
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.54
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.54
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.54
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.54
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.54
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.54
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.54
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.54
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.54
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.54
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.54
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.54
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.54
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.53
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.53
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.53
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.53
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.53
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.53
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.53
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.53
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.53
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.53
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.53
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.53
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.53
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.53
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.53
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.53
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.53
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.53
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.52
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.52
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.52
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.52
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.52
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.52
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.52
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.52
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.52
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.52
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.52
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.52
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.52
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.52
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.52
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.52
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.52
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.52
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.52
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.52
3u23_A	65	CD2-associated protein; structural genomics, struc	99.52
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.52
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.52
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.52
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.52
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.51
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.51
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.51
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.51
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.51
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.51
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.51
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.51
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.51
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.51
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.51
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.51
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.51
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.51
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.51
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.51
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.51
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.51
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.51
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.51
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.51
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.51
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.51
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.51
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.51
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.51
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.51
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.5
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.5
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.5
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.5
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.5
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.5
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.5
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.5
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.5
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.5
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.5
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.5
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.5
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.5
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.5
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.5
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.5
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.5
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.5
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.49
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.49
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.49
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.49
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.49
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.49
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.49
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.49
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.49
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.49
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.49
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.49
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.49
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.49
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.49
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.49
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.49
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.49
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.49
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.49
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.49
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.49
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.49
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.49
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.49
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.49
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.48
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.48
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.48
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.48
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.48
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.48
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.48
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.48
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.48
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.48
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.48
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.48
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.48
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.48
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.48
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.47
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.47
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.47
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.47
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.47
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.47
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.47
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.47
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.47
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.47
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.47
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.47
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.47
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.47
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.47
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.47
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.47
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.47
3u23_A	65	CD2-associated protein; structural genomics, struc	99.47
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.47
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.47
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.47
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.47
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.46
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.46
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.46
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.46
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.46
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.46
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.46
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.46
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.46
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.46
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.46
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.46
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.46
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.46
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.46
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.46
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.46
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.46
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.46
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.46
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.46
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.46
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.45
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.45
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.45
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.45
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.45
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.45
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.45
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.45
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.45
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.45
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.45
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.45
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.45
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.45
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.45
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.45
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.45
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.44
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.44
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.44
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.44
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.44
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.44
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.44
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.44
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.44
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.44
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.44
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.44
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.44
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.44
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.44
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.43
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.43
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.43
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.43
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.43
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.42
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.42
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.42
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.42
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.42
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.42
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.41
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.41
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.41
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.41
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.41
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.41
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.41
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.41
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.41
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.4
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.4
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.4
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.4
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.4
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.4
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.4
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.39
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.39
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.39
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.39
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.39
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.38
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.38
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.38
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.37
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.37
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.37
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.37
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.36
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.36
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.35
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.35
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.35
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.34
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.34
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.33
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.33
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.33
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.32
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.32
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.32
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.31
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.31
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.31
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.3
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.28
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.26
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.25
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.23
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.23
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.22
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.21
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.2
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.18
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.15
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.15
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.14
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.14
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.14
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.09
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.07
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.03
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.02
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.0
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.0
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.99
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.98
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	98.96
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.95
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	98.94
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.91
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	98.9
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	98.86
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.86
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.81
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.81
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	98.78
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	98.77
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.73
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.71
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.69
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	98.67
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.65
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	98.61
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.57
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.55
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.49
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.47
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.39
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.36
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.35
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.26
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.2
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.17
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.1
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.1
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.05
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.03
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.01
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.0
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	97.96
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	97.92
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.88
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.82
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	97.72
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	97.61
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	97.32
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.19
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	96.88
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	96.58
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	95.97
2kt8_A	76	Probable surface protein; SH3 family, structural g	95.65
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	95.4
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	95.0
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	94.99
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	94.75
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	94.69
2kt8_A	76	Probable surface protein; SH3 family, structural g	94.51
3h41_A	311	NLP/P60 family protein; NLPC/P60 family protein, s	93.36
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	92.58

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.93  E-value=5.1e-26  Score=189.83  Aligned_cols=121  Identities=31%  Similarity=0.646  Sum_probs=108.5

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCc-------cceEEEEc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEV-------VPEYYIAA  109 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~-------~~~~~~a~  109 (290)
                      ....|+|||+|.+..++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+......       ....++|+
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~--~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~~~~p~~~~~~~~al   87 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEK--SESGWWFCQMKAKRGWIPASFLEPLDSPDETEDPEPNYAGEPYVAI   87 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEEC--CTTSCCEEEECCCCCCCCGGGCCCSSCSSCSCCCCCCTTCEEEEES
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEe--cCCCeEEEEECCeeeEechheEEeeccccccchhhccccceeeeec
Confidence            35789999999999999999999999999754  5789999999999999999999987654211       34678999


Q ss_pred             ccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCC
Q psy7076         110 YPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA  159 (290)
Q Consensus       110 ~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~  159 (290)
                      |+|.++..+||+|.+||+|.|+.. ++|||.|+.+|+.||||.+||+.+..
T Consensus        88 ~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           88 KAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             SCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             cccCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCEEEEehHHeEECCC
Confidence            999999999999999999999998 78999999999999999999999874

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.93  E-value=7.8e-25  Score=186.00  Aligned_cols=195  Identities=22%  Similarity=0.350  Sum_probs=119.2

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCC-----------------Cc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG-----------------EV  101 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~-----------------~~  101 (290)
                      ++++|+|+|.++.++||+|++||+|.|+.. ..+.+||.++.+|+.||||.+||+.....-                 ..
T Consensus         1 m~~~al~~~~~~~~~eLs~~~Gd~i~v~~~-~~~~~W~~~~~~g~~G~~P~~yv~~~~~~w~~g~isr~~ae~lL~~~~~   79 (217)
T 1gri_A            1 MEAIAKYDFKATADDELSFKRGDILKVLNE-ECDQNWYKAELNGKDGFIPKNYIEMKPHPWFFGKIPRAKAEEMLSKQRH   79 (217)
T ss_dssp             CEEEECSCBCCCSSSCCCBCTTCEEEC-------CCEEEEESSSCEEEEEGGGEECCCCSSBCTTCCHHHHHHHHHTCSS
T ss_pred             CEEEEeeccCCcCCCcCCCCCCCEEEEEec-cCCCCeEeeccCCccceECCcccccccchhhcccCCHHHHHHHHhccCC
Confidence            479999999999999999999999999754 236789999999999999999998765421                 00


Q ss_pred             cceEEEEcccCCCCCCCCceecCCCEEEEEee---cCCeEEEEeCCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCC
Q psy7076         102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDT  178 (290)
Q Consensus       102 ~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~---~~~W~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~  178 (290)
                      .+.+.+ -..-.....-.|++..++.|.....   .+|++...    ...|++. .+.+...... +....         
T Consensus        80 ~G~fLv-R~S~~~~g~~~LSv~~~~~v~h~~I~~~~~g~~~~~----~~~f~sl-~eLv~~~~~~-~~~~~---------  143 (217)
T 1gri_A           80 DGAFLI-RESESAPGDFSLSVKFGNDVQHFKVLRDGAGKYFLW----VVKFNSL-NELVDYHRST-SVSRN---------  143 (217)
T ss_dssp             TTCEEE-EECSSSTTCEEEEEEETTEEEEEEEEECSSSCEESS----SCEESSH-HHHHHHHHHS-CSSSS---------
T ss_pred             CceEEE-EccCCCCCCEEEEEEECCEEEEEEEEEcCCCCEEEe----eeEcCCH-HHHHHhhhcc-ccccc---------
Confidence            111111 1111112223467777776644332   33332211    0112210 0000000000 00000         


Q ss_pred             CCCCCCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEE
Q psy7076         179 PTKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGEL  258 (290)
Q Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~  258 (290)
                                      ..   ..+..      ..+......+++|+|||.++.++||+|++||+|.|+++.++|||.|++
T Consensus       144 ----------------~~---~~l~~------~~~~~~~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~W~~g~~  198 (217)
T 1gri_A          144 ----------------QQ---IFLRD------IEQVPQQPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC  198 (217)
T ss_dssp             ----------------TT---CCCCB------CCCCCCCCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEC
T ss_pred             ----------------cc---eeecc------cccCCCCceEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCCeEEEEE
Confidence                            00   00000      001113356799999999999999999999999999999999999997


Q ss_pred             cCCCCCceeeEecCCceEEecC
Q psy7076         259 QAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       259 ~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      .  |   +.||||++||+.+..
T Consensus       199 ~--g---~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          199 H--G---QTGMFPRNYVTPVNR  215 (217)
T ss_dssp             S--S---CEEEEEGGGEEEECC
T ss_pred             C--C---eEEEEeHHHeEECCC
Confidence            5  3   489999999999864

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.91  E-value=2.4e-24  Score=179.73  Aligned_cols=128  Identities=23%  Similarity=0.538  Sum_probs=107.5

Q ss_pred             cceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCC
Q psy7076         102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPT  180 (290)
Q Consensus       102 ~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (290)
                      ....++|+|+|.++..+||+|.+||+|.|+.. +++||.|+.+|+.||||.+||+.+.......                
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~----------------   73 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLDSPDETE----------------   73 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEECCCCCCCCGGGCCCSSCSSCSC----------------
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCeeeEechheEEeeccccccc----------------
Confidence            45689999999999999999999999999998 6889999999999999999998875332100                


Q ss_pred             CCCCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcC
Q psy7076         181 KSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQA  260 (290)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~  260 (290)
                                   .+      .          | ......++|+|||.++.++||+|++||+|.|+++.++|||+|++. 
T Consensus        74 -------------~~------~----------p-~~~~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~-  122 (193)
T 1ng2_A           74 -------------DP------E----------P-NYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD-  122 (193)
T ss_dssp             -------------CC------C----------C-CTTCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET-
T ss_pred             -------------hh------h----------c-cccceeeeeccccCCCCCCcccccCCCEEEEEEecCCCeEEEEEC-
Confidence                         00      0          0 012456899999999999999999999999999999999999975 


Q ss_pred             CCCCceeeEecCCceEEecC
Q psy7076         261 KGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       261 ~g~~~~~G~fP~~~v~~~~~  280 (290)
                          |+.||||++||+.+..
T Consensus       123 ----g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A          123 ----DVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             ----TEEEEEEGGGEEETTS
T ss_pred             ----CCEEEEehHHeEECCC
Confidence                3489999999999865

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.91  E-value=9.7e-24  Score=187.99  Aligned_cols=122  Identities=27%  Similarity=0.455  Sum_probs=105.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCccCCCc--------------
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDETGEV--------------  101 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~~~~--------------  101 (290)
                      ....++|||+|.++.++||+|++||+|.|+..  .+++||.|+ .+|+.||||.+||+.+......              
T Consensus       133 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~g~~~~~~~  210 (304)
T 2eyz_A          133 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDK--PEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVSALIGGNQEGSHP  210 (304)
T ss_dssp             CCCEEEECSCCCCSCSSSCCCCTTCEEEEEEC--CSSSEEEEECTTSCEEEEESTTEEECCCSTTSCCCCCCCSSCCSCC
T ss_pred             cceeEEEEeeecCCCCCcCcccCCCEEEEEEe--cCCCcEEEEeCCCceeccchhccccccCCCcccccccCCCcCCCCC
Confidence            45689999999999999999999999999753  678999999 5999999999999876543110              


Q ss_pred             -------------------------cceEEEEcccCC--CCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCC
Q psy7076         102 -------------------------VPEYYIAAYPYD--STEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY  153 (290)
Q Consensus       102 -------------------------~~~~~~a~~~y~--~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~  153 (290)
                                               ...+++|+|+|.  ++..+||+|++||+|.|+++ ++|||.|+++|+.||||.+|
T Consensus       211 ~~~~~~~p~~~~~p~~~~~~p~~~~~~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~~g~~G~fP~~y  290 (304)
T 2eyz_A          211 QPLGGPEPGPYAQPSVNTPLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECNGKRGHFPFTH  290 (304)
T ss_dssp             CSCSCCCSBTTBCSSSSCSSSCCSSCCCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEETTEEEECCCTT
T ss_pred             CCCCCCCcccccccccccccCCCCCCCEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEECCceEEechHH
Confidence                                     113678999999  67899999999999999988 78999999999999999999


Q ss_pred             eEecCCC
Q psy7076         154 VVPYEAQ  160 (290)
Q Consensus       154 v~~~~~~  160 (290)
                      |+.+...
T Consensus       291 v~~~~~~  297 (304)
T 2eyz_A          291 VRLLDQQ  297 (304)
T ss_dssp             SCCCSSC
T ss_pred             EEECCCC
Confidence            9998754

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.91  E-value=2.3e-23  Score=185.58  Aligned_cols=162  Identities=23%  Similarity=0.469  Sum_probs=112.0

Q ss_pred             ceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEe-CCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCC
Q psy7076         103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPT  180 (290)
Q Consensus       103 ~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (290)
                      ...++|+|+|.++..+||+|++||+|.|++. +++||.++. +|+.||||.+||+.+........  .....        
T Consensus       134 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~--~~~~g--------  203 (304)
T 2eyz_A          134 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPASASVS--ALIGG--------  203 (304)
T ss_dssp             CCEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSSEEEEECTTSCEEEEESTTEEECCCSTTSCC--CCCCC--------
T ss_pred             ceeEEEEeeecCCCCCcCcccCCCEEEEEEecCCCcEEEEeCCCceeccchhccccccCCCcccc--cccCC--------
Confidence            4579999999999999999999999999998 689999994 89999999999999875432210  00000        


Q ss_pred             CCCCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCC--CCCCCceecCCCCEEEEEEcCCCCeEEEEE
Q psy7076         181 KSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYT--ATSSEQLSLSRGQLIMIRKKTTTGWWEGEL  258 (290)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~--~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~  258 (290)
                       +....... +...+.+.....+....  ...+......+++|+|||.  ++.++||+|++||+|.|+++.++|||.|++
T Consensus       204 -~~~~~~~~-~~~~~~p~~~~~p~~~~--~~p~~~~~~~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~gWw~g~~  279 (304)
T 2eyz_A          204 -NQEGSHPQ-PLGGPEPGPYAQPSVNT--PLPNLQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGEC  279 (304)
T ss_dssp             -SSCCSCCC-SCSCCCSBTTBCSSSSC--SSSCCSSCCCCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTSCEEEEE
T ss_pred             -CcCCCCCC-CCCCCCccccccccccc--ccCCCCCCCEEEEEeeeecCCCCCCCeecccCCCEEEEEEecCCCeEEEEE
Confidence             00000000 00000000000000000  0001113356789999999  779999999999999999999999999998


Q ss_pred             cCCCCCceeeEecCCceEEecCCCc
Q psy7076         259 QAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       259 ~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      .  |   +.||||++||+.+....+
T Consensus       280 ~--g---~~G~fP~~yv~~~~~~~~  299 (304)
T 2eyz_A          280 N--G---KRGHFPFTHVRLLDQQNP  299 (304)
T ss_dssp             T--T---EEEECCCTTSCCCSSCCT
T ss_pred             C--C---ceEEechHHEEECCCCCc
Confidence            6  3   489999999999876544

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.79  E-value=5.4e-24  Score=189.53  Aligned_cols=171  Identities=20%  Similarity=0.407  Sum_probs=110.7

Q ss_pred             ceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEe-CCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCC
Q psy7076         103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPT  180 (290)
Q Consensus       103 ~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (290)
                      ...++|+|+|.++..+||+|++||+|.|+++ +++||.++. +|+.||||.+||+.+.....................+.
T Consensus       125 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p~~s  204 (303)
T 2lqn_A          125 LEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIPEPA  204 (303)
Confidence            4678999999999999999999999999988 689999996 89999999999999875432211000000000000000


Q ss_pred             CCCCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCCCC--CCceecCCCCEEEEEEcCCCCeEEEEE
Q psy7076         181 KSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATS--SEQLSLSRGQLIMIRKKTTTGWWEGEL  258 (290)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~--~~eLs~~~Gd~i~v~~~~~~gW~~g~~  258 (290)
                      .    ...+++...+.+.....+... ............+++|+|||.++.  ++||+|++||+|.|+++.++|||.|++
T Consensus       205 ~----~~~~p~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~  279 (303)
T 2lqn_A          205 H----AYAQPQTTTPLPAVSGSPGAA-ITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEV  279 (303)
Confidence            0    000000000000000000000 000000112456799999998555  779999999999999999999999998


Q ss_pred             cCCCCCceeeEecCCceEEecCCCc
Q psy7076         259 QAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       259 ~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      .  |   +.||||++||+.+....+
T Consensus       280 ~--g---~~G~fP~~yv~~~~~~~~  299 (303)
T 2lqn_A          280 N--G---RKGLFPFTHVKIFDPQNP  299 (303)
Confidence            6  3   389999999999876544

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=99.79  E-value=6.4e-24  Score=189.08  Aligned_cols=122  Identities=25%  Similarity=0.497  Sum_probs=104.5

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccCCC---------------
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETGE---------------  100 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~~~---------------  100 (290)
                      ...+|+|||+|.++..+||+|++||+|.|+..  .+++||.|+. +|+.||||.+||+.+.....               
T Consensus       124 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~~~~~~g~~G~~P~~yv~~~~~~~~~~~~~s~~~~~~~~p  201 (303)
T 2lqn_A          124 NLEYVRTLYDFPGNDAEDLPFKKGEILVIIEK--PEEQWWSARNKDGRVGMIPVPYVEKLVRSSPHGKHGNRNSNSYGIP  201 (303)
Confidence            45689999999999999999999999999754  5789999995 99999999999998765320               


Q ss_pred             ---------------------------------ccceEEEEcccCCCCC--CCCceecCCCEEEEEee-cCCeEEEEeCC
Q psy7076         101 ---------------------------------VVPEYYIAAYPYDSTE--PGDLTFNQDEVIYVTKK-ENDWWTGTIGD  144 (290)
Q Consensus       101 ---------------------------------~~~~~~~a~~~y~~~~--~~eL~~~~G~~v~v~~~-~~~W~~~~~~g  144 (290)
                                                       ....+++|+|+|.++.  .+||+|++||+|.|+++ ++|||.|+++|
T Consensus       202 ~~s~~~~~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~g  281 (303)
T 2lqn_A          202 EPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVNG  281 (303)
Confidence                                             0124689999998554  77999999999999988 68899999999


Q ss_pred             eeEEecCCCeEecCCC
Q psy7076         145 RTGLFPSNYVVPYEAQ  160 (290)
Q Consensus       145 ~~G~~P~~~v~~~~~~  160 (290)
                      +.||||.+||+.+...
T Consensus       282 ~~G~fP~~yv~~~~~~  297 (303)
T 2lqn_A          282 RKGLFPFTHVKIFDPQ  297 (303)
Confidence            9999999999998643

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.87  E-value=8.2e-23  Score=182.38  Aligned_cols=157  Identities=24%  Similarity=0.406  Sum_probs=51.5

Q ss_pred             cceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEe-CCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCC
Q psy7076         102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTP  179 (290)
Q Consensus       102 ~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  179 (290)
                      ....++|+|+|.++..+||+|++||+|.|+++ +.+||.+++ +|+.||||.+||+.......... .......      
T Consensus       146 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~-~~~~~~s------  218 (308)
T 3qwy_A          146 IIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNALGTTGLVPANYVQIQMEFHNDRT-SKGASQS------  218 (308)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECTTSCEEEEEGGGEEEC----------------------
T ss_pred             cceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCCeEEEEeCCCCeeEecccccccccccccCcc-ccccccC------
Confidence            35689999999999999999999999999987 689999997 99999999999995532211100 0000000      


Q ss_pred             CCCCCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccC--CCCCCCceecCCCCEEEEEEcCCCCeEEEE
Q psy7076         180 TKSEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPY--TATSSEQLSLSRGQLIMIRKKTTTGWWEGE  257 (290)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy--~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~  257 (290)
                      .........++++.++.+         ...... ......+++|+|||  .+..++||+|++||+|.|+++.++|||.|+
T Consensus       219 s~~ss~s~p~p~s~ps~~---------sp~p~~-~~~~~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~  288 (308)
T 3qwy_A          219 SIGSSGGGAERFSSASTS---------SDNIEL-QPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAE  288 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCCcccccccccccccc---------Cccccc-ccccccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEE
Confidence            000000000000000000         000000 00114578999999  455569999999999999999889999999


Q ss_pred             EcCCCCCceeeEecCCceEEecC
Q psy7076         258 LQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       258 ~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      +.  |   +.||||++||+.+..
T Consensus       289 ~~--g---~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          289 LD--G---QIGSVPHTYLRFTAV  306 (308)
T ss_dssp             -----------------------
T ss_pred             EC--C---eeEEechHHeEEecC
Confidence            86  3   389999999999764

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.87  E-value=6.9e-23  Score=182.86  Aligned_cols=120  Identities=18%  Similarity=0.379  Sum_probs=50.4

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCccc---CCccCCC------------
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE---PCDETGE------------  100 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~---~~~~~~~------------  100 (290)
                      ....++|+|+|.++..+||+|++||+|.|+..  .+++||.|++ +|+.||||.+||+   .+.....            
T Consensus       146 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~ss~~ss  223 (308)
T 3qwy_A          146 IIEVVVGTFKFTGERETDLPFEQGERLEILSK--TNQDWWEARNALGTTGLVPANYVQIQMEFHNDRTSKGASQSSIGSS  223 (308)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEC--CSSSEEEEECTTSCEEEEEGGGEEEC--------------------
T ss_pred             cceeEEEeceEcCCCCCcCcCCCCCEEEEEEc--CCCCeEEEEeCCCCeeEecccccccccccccCccccccccCCCCCc
Confidence            45689999999999999999999999999743  5789999996 9999999999999   3221100            


Q ss_pred             -------------------c--cceEEEEcccCCC--CCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEe
Q psy7076         101 -------------------V--VPEYYIAAYPYDS--TEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP  156 (290)
Q Consensus       101 -------------------~--~~~~~~a~~~y~~--~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~  156 (290)
                                         .  ....++|+|+|.+  ...+||+|++||+|.|+++ +++||.|+++|+.|+||.+||+.
T Consensus       224 ~s~p~p~s~ps~~sp~p~~~~~~~~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~ww~g~~~g~~G~fP~~yv~~  303 (308)
T 3qwy_A          224 GGGAERFSSASTSSDNIELQPRLPAKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNGMYKAELDGQIGSVPHTYLRF  303 (308)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccCcccccccccccccccccccccccCCcccceeCCCCEEEEEEEcCCCcEEEEECCeeEEechHHeEE
Confidence                               0  0346789999954  4559999999999999998 78999999999999999999998


Q ss_pred             cC
Q psy7076         157 YE  158 (290)
Q Consensus       157 ~~  158 (290)
                      +.
T Consensus       304 ~~  305 (308)
T 3qwy_A          304 TA  305 (308)
T ss_dssp             --
T ss_pred             ec
Confidence            76

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.75  E-value=5.6e-20  Score=166.21  Aligned_cols=152  Identities=15%  Similarity=0.210  Sum_probs=103.4

Q ss_pred             ceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCCC
Q psy7076         103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTK  181 (290)
Q Consensus       103 ~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (290)
                      ...++|+|+|.++..+||+|++||+|.|++. ++|||.|+.+|+.|+||++||+.+........ ....           
T Consensus       174 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~-~~~~-----------  241 (341)
T 2dyb_A          174 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVRGATGIFPLSFVKILKDFPEEDD-PTNW-----------  241 (341)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEECCCCTTC-CCEE-----------
T ss_pred             CcEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCCEEEEEECCcEEEechHHeEEcCCCCcccc-cccc-----------
Confidence            3568999999999999999999999999988 78999999999999999999999864322110 0000           


Q ss_pred             CCCCcccCccCCCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCC----CCCCceec--CCCCEEEEEEcCCCCeEE
Q psy7076         182 SEGVTRTSSVSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTA----TSSEQLSL--SRGQLIMIRKKTTTGWWE  255 (290)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~----~~~~eLs~--~~Gd~i~v~~~~~~gW~~  255 (290)
                        .......+  .+..   . .+..   ..... .....+.|+|+|.+    ....+|.|  +.||+|.|+++.++|||.
T Consensus       242 --~~~~~~~~--~~~~---~-~~~~---~~~~~-~~~~~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~  309 (341)
T 2dyb_A          242 --LRCYYYED--TIST---I-KDIA---VEEDL-SSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMV  309 (341)
T ss_dssp             --EEEEEECS--SCEE---E-EEEE---ECSCT-TCCCCHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHH
T ss_pred             --ccccccCC--CCcc---c-cccc---ccccc-CCCcchhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeE
Confidence              00000000  0000   0 0000   00000 11222467999987    45566666  899999999999999999


Q ss_pred             EEEcCCCCCceeeEecCC-ceEEecC
Q psy7076         256 GELQAKGKKRQVGWFPAS-YVKVMGG  280 (290)
Q Consensus       256 g~~~~~g~~~~~G~fP~~-~v~~~~~  280 (290)
                      |++.  |+.|+.|+||.+ ||+.+++
T Consensus       310 Ge~~--g~~G~~glfP~~~~v~~~~~  333 (341)
T 2dyb_A          310 RQAR--GLPSQKRLFPWKLHITQKDN  333 (341)
T ss_dssp             HHHT--TSCCBTTBCSSCEEEEECC-
T ss_pred             EEEC--CCCCCCceecceeEEEecCC
Confidence            9987  566778999998 8887654

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.75  E-value=2.9e-20  Score=168.04  Aligned_cols=121  Identities=21%  Similarity=0.392  Sum_probs=93.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCcc--------------
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVV--------------  102 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~~--------------  102 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+..  .++|||.|+.+|+.||||+|||+.+...+...              
T Consensus       173 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~~~~~~~~~~~~~~  250 (341)
T 2dyb_A          173 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSR--INKDWLEGTVRGATGIFPLSFVKILKDFPEEDDPTNWLRCYYYEDT  250 (341)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEEEEE--CSSSEEEEEETTEEEEEEGGGEEEEECCCCTTCCCEEEEEEEECSS
T ss_pred             CCcEEEEEEeeCCCCCCcCCccCCCEEEEEEe--cCCCEEEEEECCcEEEechHHeEEcCCCCccccccccccccccCCC
Confidence            45689999999999999999999999999754  67899999999999999999999765432110              


Q ss_pred             ---------------ceEEEEcccCCC----CCCCCcee--cCCCEEEEEee-cCCeEEEEeCC---eeEEecCC-CeEe
Q psy7076         103 ---------------PEYYIAAYPYDS----TEPGDLTF--NQDEVIYVTKK-ENDWWTGTIGD---RTGLFPSN-YVVP  156 (290)
Q Consensus       103 ---------------~~~~~a~~~y~~----~~~~eL~~--~~G~~v~v~~~-~~~W~~~~~~g---~~G~~P~~-~v~~  156 (290)
                                     ...+.++|+|.+    ..+.+|+|  .+||+|.|++. ++|||.|+++|   +.|+||.+ ||+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~gWw~Ge~~g~~G~~glfP~~~~v~~  330 (341)
T 2dyb_A          251 ISTIKDIAVEEDLSSTPLLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVALMVRQARGLPSQKRLFPWKLHITQ  330 (341)
T ss_dssp             CEEEEEEEECSCTTCCCCHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHHHHHHHHTTSCCBTTBCSSCEEEEE
T ss_pred             CccccccccccccCCCcchhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCCEeEEEECCCCCCCceecceeEEEe
Confidence                           001123455555    44455666  79999999988 78999998854   45599998 7777


Q ss_pred             cCC
Q psy7076         157 YEA  159 (290)
Q Consensus       157 ~~~  159 (290)
                      .+.
T Consensus       331 ~~~  333 (341)
T 2dyb_A          331 KDN  333 (341)
T ss_dssp             CC-
T ss_pred             cCC
Confidence            653

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.68  E-value=3.9e-17  Score=109.26  Aligned_cols=55  Identities=36%  Similarity=0.788  Sum_probs=49.1

Q ss_pred             cEEEEeccccCCCCCC-CccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDE-LSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~e-Ls~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   95 (290)
                      .+|+|||+|.++.++| |+|++||+|.|+..  .+++||.|++ +|++||||+|||+.+
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~--~~~~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQV--PDGGWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCC--CTTSCEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEe--cCCCeEEEEeCCCCEEEEcHHHEEEC
Confidence            5799999999998887 99999999999743  6789999998 799999999999864

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.68  E-value=5.7e-17  Score=113.48  Aligned_cols=72  Identities=22%  Similarity=0.458  Sum_probs=62.8

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCccceEEEEcccCCCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDST  115 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~~~~~~~a~~~y~~~  115 (290)
                      ++++|||+|.+ .++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+....  ....++|+|||+++
T Consensus         1 m~a~alydy~~-~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~--~~~~~~alydy~a~   72 (73)
T 2kxd_A            1 MGAPPLPPYSA-GGREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFVPAAYVKKLDSGT--GKELVLALYDYQEK   72 (73)
T ss_dssp             CCCCCCCSSCC-CSCCCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEECCSSC--CSCEEEESSCBCCC
T ss_pred             CeEEEeeeeCC-CCCEeeEcCCCEEEEEEe--cCCCEEEEEECCCEEEEehHHeEEcCCCC--CCceEEEeccccCC
Confidence            35899999998 899999999999999754  57899999999999999999999886543  25689999999986

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.67  E-value=5.9e-17  Score=120.06  Aligned_cols=80  Identities=39%  Similarity=0.697  Sum_probs=70.0

Q ss_pred             CCeeeeccCCcccCCccCC------CccceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCC
Q psy7076          81 RGQTGWFPESYVEPCDETG------EVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY  153 (290)
Q Consensus        81 ~g~~G~~P~~yv~~~~~~~------~~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~  153 (290)
                      +|+.||||.+||+.+....      ......++|+|+|.++..+||+|++||+|.|++. +++||.++.+|+.||||.+|
T Consensus         6 ~g~~G~fP~~~v~~~~~~~~~~~p~~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~y   85 (98)
T 1udl_A            6 SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNY   85 (98)
T ss_dssp             SSCCSSCCCCCCCCCSCCCCCCCSCCCCSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTS
T ss_pred             CCCEeEEEhhhEEEcCCcccccCCCCCCceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEECCcEEEEehHH
Confidence            6899999999999876432      1245678999999999999999999999999988 67999999999999999999


Q ss_pred             eEecCCC
Q psy7076         154 VVPYEAQ  160 (290)
Q Consensus       154 v~~~~~~  160 (290)
                      |+.+...
T Consensus        86 v~~~~~~   92 (98)
T 1udl_A           86 VKMTTDS   92 (98)
T ss_dssp             EEECCCC
T ss_pred             eEEcCCC
Confidence            9998644

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.67  E-value=9.3e-17  Score=109.38  Aligned_cols=57  Identities=39%  Similarity=0.784  Sum_probs=51.4

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      ...+|+|||+|.++.++||+|++||+|.|+..  .+++||.|++  +|+.||||+|||+++
T Consensus         5 ~~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~--~~~gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            5 DLFSYQALYSYIPQNDDELELRDGDIVDVMEK--CDDGWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SSCEEEESSCBCCSSTTBCCBCTTCEEEEEEE--CTTSEEEEEETTTCCEEEEETTSEEEC
T ss_pred             cCEEEEEceeECCCCcCCcCCCCCCEEEEeEe--CCCCEEEEEECCCCCEEEEehhHeEEE
Confidence            45689999999999999999999999999754  6789999987  799999999999876

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.65  E-value=8.7e-17  Score=119.13  Aligned_cols=62  Identities=34%  Similarity=0.677  Sum_probs=54.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||+|++.  |   +.||||++||+.+....+.
T Consensus        34 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~~~   95 (98)
T 1udl_A           34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--G---VTGLFPSNYVKMTTDSSGP   95 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSS--S---CBCCEETTSEEECCCCSSC
T ss_pred             ceEEEECCCCCCCCCCccCCcCCCEEEEEEecCCCEEEEEEC--C---cEEEEehHHeEEcCCCCCC
Confidence            346899999999999999999999999999988999999854  3   4899999999998765544

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.64  E-value=2.1e-16  Score=105.70  Aligned_cols=57  Identities=37%  Similarity=0.802  Sum_probs=50.3

Q ss_pred             CCceEEeccCCCCCCCc-eecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQ-LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~e-Ls~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      +..++|+|||+++.++| |+|++||+|.|+++.++|||.|++. +   |+.|+||++||+.|
T Consensus         3 g~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~Ww~g~~~-~---G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            3 GARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGGWWEGEKE-D---GLRGWFPASYVQLL   60 (60)
T ss_dssp             SCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTSCEEEECT-T---SCEEEECGGGEEEC
T ss_pred             CCEEEECcccCCCCCCCCccCCCCCEEEEeEecCCCeEEEEeC-C---CCEEEEcHHHEEEC
Confidence            45699999999999887 9999999999999999999999963 2   34899999999975

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.64  E-value=7.6e-16  Score=104.85  Aligned_cols=59  Identities=27%  Similarity=0.503  Sum_probs=52.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|++..+|   +.|+||++||+++.
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~gWw~g~~~~~g---~~G~~P~nyVe~l~   64 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDDGWFVGTSRRTK---QFGTFPGNYVKPLY   64 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTC---CEEEEETTSEEECC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCCCEEEEEECCCC---CEEEEehhHeEEEe
Confidence            345899999999999999999999999999999999999986544   48999999999863

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.61  E-value=1.2e-15  Score=103.85  Aligned_cols=59  Identities=34%  Similarity=0.730  Sum_probs=52.4

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+.....+++||.|+.+|+.||||.+||+.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~l   63 (64)
T 2jte_A            5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELNGKEGVFPDNFAVQI   63 (64)
T ss_dssp             SSEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEECCeEEEEeHHHEEEC
Confidence            34689999999999999999999999999754334789999999999999999999875

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.60  E-value=1.8e-15  Score=105.79  Aligned_cols=61  Identities=28%  Similarity=0.336  Sum_probs=54.0

Q ss_pred             CccEEEEeccccCC--CCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCC
Q psy7076          37 EYRRYRAIYEFVSR--NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG   99 (290)
Q Consensus        37 ~~~~~~al~~~~~~--~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~   99 (290)
                      ...+++|||+|.+.  .++||+|++||+|.|+..  .+++||.|+++|+.||||.|||+.+...+
T Consensus         8 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~--~~~gWw~g~~~g~~G~fP~~yv~~~~~~~   70 (73)
T 2ebp_A            8 FCGRARVHTDFTPSPYDTDSLKLKKGDIIDIISK--PPMGTWMGLLNNKVGTFKFIYVDVLSSGP   70 (73)
T ss_dssp             CSEEEEECSCBCCCTTCCSBCCBCSSCEEEEEEC--CSSSCEEEECSSCEEEECSTTEEECCCCS
T ss_pred             cceEEEEeeccCCCCCCCCccCCCCCCEEEEEEe--CCCCeEEEEECCCEEEEeHHHEEECCCCC
Confidence            45789999999976  999999999999999754  67899999999999999999999886543

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.60  E-value=1.4e-15  Score=105.03  Aligned_cols=61  Identities=31%  Similarity=0.644  Sum_probs=53.7

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+.....+++||.|+.+|+.||||.+||+.+...
T Consensus         2 ~~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~g~~G~~P~~yV~~~~~~   62 (69)
T 2ydl_A            2 SDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPPL   62 (69)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEETTEEEEEEGGGEEECCSC
T ss_pred             CcEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEECCcEEEecHHHEEECCCC
Confidence            4679999999999999999999999999754223789999999999999999999987654

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.59  E-value=1.3e-15  Score=103.96  Aligned_cols=58  Identities=33%  Similarity=0.747  Sum_probs=52.8

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      .+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.|+||++||+.+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~--~~~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEE--VEEGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCC--SSSSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEe--cCCCEEEEEECCcEEEecHHHEEEcCCC
Confidence            579999999999999999999999999743  6789999999999999999999988654

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.59  E-value=5.1e-15  Score=105.63  Aligned_cols=64  Identities=30%  Similarity=0.503  Sum_probs=55.3

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG   99 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~   99 (290)
                      ....+++|||+|.++..+||+|++||+|.|+.....+++||.|+.+|+.||||.+||+.+...+
T Consensus        15 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   78 (81)
T 1x43_A           15 SNNRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERGNQKGKVPITYLELLNSGP   78 (81)
T ss_dssp             CCCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEETTEEEEEEGGGEEECCCCC
T ss_pred             CCCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEECCCEEEEehHHEEECCCCC
Confidence            3457899999999999999999999999997542236899999999999999999999886543

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.59  E-value=2.5e-15  Score=103.27  Aligned_cols=59  Identities=25%  Similarity=0.346  Sum_probs=52.6

Q ss_pred             CccEEEEeccccCC--CCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSR--NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~--~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      +..+++|||+|.++  ..+||+|++||+|.|+..  .+++||.|+++|+.||||++||+.+..
T Consensus         5 ~~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~--~~~gWw~g~~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            5 GPIYARVIQKRVPNAYDKTALALEVGELVKVTKI--NVSGQWEGECNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             CSCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEE--CTTSEEEEEETTEEEEEEGGGBCCBCS
T ss_pred             CCEEEEEeEEECCCCCCCCccccCCCCEEEEEEe--cCCCEEEEEECCCEEEEehHhEEEcCC
Confidence            34579999999999  899999999999999754  578999999999999999999998754

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.59  E-value=1.5e-15  Score=101.24  Aligned_cols=56  Identities=27%  Similarity=0.627  Sum_probs=51.1

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      ++++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.|+||.+||+.+.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            2 VEAIVEFDYQAQHDDELTISVGEIITNIRK--EDGGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEEC--CTTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEECcccCCCCcCEeeECCCCEEEEEEe--CCCCEEEEEECCeEEEEehHHeEEcC
Confidence            469999999999999999999999999753  57899999999999999999998764

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.58  E-value=2.1e-15  Score=106.60  Aligned_cols=73  Identities=21%  Similarity=0.436  Sum_probs=63.4

Q ss_pred             CCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCccceEEEEcccCCCCCCCCceecCC
Q psy7076          49 SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQD  125 (290)
Q Consensus        49 ~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~~~~~~~a~~~y~~~~~~eL~~~~G  125 (290)
                      ++..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+....  ....++++|+|.++..+||+|.+.
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~--~~~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFVPAAYVKKLDSGT--GKELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCC--CCSSCCCEEETTEEECCCGGGEEECCCSS--CCCEEEESSCCCCSSCCCCCSCCC
T ss_pred             CcCCCccCCCCCCEEEEEEe--cCCCEEEEEECCcEEEEEeeEEEEcCCCC--CCceEEECCCcCCCCCCccccCCC
Confidence            46789999999999999743  57899999999999999999999887543  256899999999999999999763

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.58  E-value=2.4e-15  Score=102.59  Aligned_cols=58  Identities=33%  Similarity=0.659  Sum_probs=52.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      .+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+..+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2nwm_A            2 KAARLKFDFQAQSPKELTLQKGDIVYIHKE--VDKNWLEGEHHGRLGIFPANYVEVLPLE   59 (65)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEC--CTTTCEEEEETTEEEEECGGGEEECCCC
T ss_pred             cEEEEeeeECCCCcCccCCcCCCEEEEEEe--cCCCEEEEEECCcEEEEehhhEEEcCCC
Confidence            469999999999999999999999999743  6789999999999999999999987654

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.58  E-value=7.4e-15  Score=104.50  Aligned_cols=66  Identities=64%  Similarity=1.050  Sum_probs=57.7

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ...+++|+|||.++.++||+|++||+|.|+++.+++||+|++..+|..++.||||++||+.+....
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~~   71 (80)
T 1ue9_A            6 SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSS   71 (80)
T ss_dssp             CCEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCC
T ss_pred             CCeEEEECcccCCCCCCCCCCCCCCEEEEEEecCCCcEEEEECCCCCCCcEEEEchHHeEECCCCC
Confidence            467899999999999999999999999999998999999999865433468999999999986543

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.58  E-value=2.4e-15  Score=100.27  Aligned_cols=56  Identities=38%  Similarity=0.782  Sum_probs=51.1

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      +.++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.++
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDS--SNPSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEE--CCCCEEEEEECCeEEEeeHHHeEEcc
Confidence            579999999999999999999999999743  67899999999999999999998763

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=4.8e-15  Score=102.10  Aligned_cols=59  Identities=31%  Similarity=0.603  Sum_probs=53.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.|+||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKK--GNDNWATVMFNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEE--CSSSCEEEEETTEEEEECSTTEEECCCS
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEe--CCCCEEEEEeCCCEEEeehHHeEECCCC
Confidence            4679999999999999999999999999754  5689999999999999999999988653

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.58  E-value=2.5e-15  Score=101.59  Aligned_cols=57  Identities=35%  Similarity=0.714  Sum_probs=52.1

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.++
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSK--VNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEE--SSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEe--CCCCEEEEEECCcEEEEeHHHEEECC
Confidence            4689999999999999999999999999754  57899999999999999999999874

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.58  E-value=2.5e-15  Score=100.86  Aligned_cols=57  Identities=32%  Similarity=0.723  Sum_probs=50.8

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      .+++|+|+|.++.++||+|++||+|.|+.....+++||.|+++|+.||||.+||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEECCEEEEEeHHHEEEC
Confidence            579999999999999999999999999754323789999999999999999999753

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4.2e-15  Score=105.77  Aligned_cols=62  Identities=37%  Similarity=0.626  Sum_probs=54.1

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++..+||+|++||+|.|+.....+++||+|+++|+.||||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   77 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLRGQTGIFPANYVTMNSGP   77 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEECCEEEEEchhHeEEcCCC
Confidence            35689999999999999999999999999754323589999999999999999999987653

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.57  E-value=4.7e-15  Score=104.49  Aligned_cols=65  Identities=22%  Similarity=0.568  Sum_probs=56.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||+|++.+  +.++.|+||++||+.+....+.
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~--~~g~~G~~P~~yv~~~~~~~p~   74 (76)
T 2ed1_A           10 VRRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQEWWIGHIEG--QPERKGVFPVSFVHILSDSGPS   74 (76)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSSEEEEEETT--CTTCEEEEEGGGEEECCCCCCS
T ss_pred             CeEEEECccCCCCCcCCcCcCCCCEEEEEEecCCCEEEEEECC--CCCCEEEEehHHeEECCCCCCC
Confidence            4579999999999999999999999999999999999999873  2245899999999998766543

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.57  E-value=6.6e-15  Score=101.40  Aligned_cols=59  Identities=31%  Similarity=0.615  Sum_probs=53.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQ--LDENWYQGEINGVSGIFPASSVEVISGP   65 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEEC--CCSSEEEEEETTEEEEEESSSEETTCSC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEe--cCCCEEEEEECCcEEEeehHHEEEcCCC
Confidence            4689999999999999999999999999743  6789999999999999999999988654

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=5.1e-15  Score=103.46  Aligned_cols=61  Identities=34%  Similarity=0.681  Sum_probs=53.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+.....+++||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETNGRIGWFPSTYVEEEGIQ   67 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEETTEEEEECSSSEEECCCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEECCeEEEeehHHEEEcCCC
Confidence            4679999999999999999999999999754322569999999999999999999987643

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.57  E-value=2.7e-15  Score=100.71  Aligned_cols=55  Identities=36%  Similarity=0.729  Sum_probs=50.8

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ++++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.|+||++||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            5 MRAEALFDFTGNSKLELNFKAGDVIFLLSR--INKDWLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEE--CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCCCCccCCCCCEEEEEEe--CCCCeEEEEECCCEEEechHHEEEC
Confidence            679999999999999999999999999754  5789999999999999999999865

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.57  E-value=2.4e-15  Score=100.28  Aligned_cols=55  Identities=31%  Similarity=0.543  Sum_probs=49.8

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~   95 (290)
                      ++++|+|+|.++.++||+|++||+|.|+..  .+++||.|+..  |+.|+||++||+.+
T Consensus         1 p~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            1 PWATAEYDYDAAEDNELTFVENDKIINIEF--VDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECceECCCCCCCcccCCCCEEEEEEe--cCCCcEEEEECCCCCEEEechHHeEEC
Confidence            368999999999999999999999999753  67899999996  99999999999865

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=6.4e-15  Score=102.94  Aligned_cols=63  Identities=35%  Similarity=0.594  Sum_probs=54.8

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccC-CCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN-AEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~-~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      +....++|||+|.++.++||+|++||+|.|+.... .+++||.|+.+|+.||||.+||+.+...
T Consensus         6 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (73)
T 2dl7_A            6 SGVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSG   69 (73)
T ss_dssp             CCCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSS
T ss_pred             CCCEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCC
Confidence            44578999999999999999999999999975321 3779999999999999999999988654

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=7.4e-15  Score=103.98  Aligned_cols=60  Identities=42%  Similarity=0.731  Sum_probs=54.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++..+||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~--~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           16 YLEKVVAIYDYTKDKEDELSFQEGAIIYVIKK--NDDGWYEGVMNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             CSEEEEECSCBCCSSTTBCCBCSSCEEEEEEE--CSSSEEEEEETTEEEEEETTSEEECSSS
T ss_pred             cCEEEEECccCCccCcCcccccCCCEEEEEEe--CCCCEEEEEECCcEEEeChHHEEEcCCC
Confidence            45689999999999999999999999999754  5789999999999999999999988654

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.57  E-value=3.7e-15  Score=99.68  Aligned_cols=55  Identities=45%  Similarity=0.838  Sum_probs=50.2

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+
T Consensus         5 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            5 SVVRAKFNFQQTNEDELSFSKGDVIHVTRV--EEGGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEE--CTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECceeCCCCcCCcCCCCCCEEEEEEe--cCCCEEEEEECCcEEEEeHHHEEEC
Confidence            579999999999999999999999999754  5689999999999999999999753

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.57  E-value=3.3e-15  Score=102.92  Aligned_cols=58  Identities=34%  Similarity=0.710  Sum_probs=52.3

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      +.++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            4 PCCRGLYDFEPENQGELGFKEGDIITLTNQ--IDENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEE--SSSSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CEEEEeeeECCCCCCccCCCCCCEEEEEEe--cCCCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            579999999999999999999999999754  5789999999999999999999987654

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.57  E-value=3.4e-15  Score=99.55  Aligned_cols=56  Identities=34%  Similarity=0.751  Sum_probs=50.4

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.|+||.+||+++
T Consensus         2 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            2 MEYVEALYQFDPQQDGDLGLKPGDKVQLLEK--LSPEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             -CEEEECSCBCCCSTTBCCBCTTCEEEEEEE--CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEECceECCCCCCCccCCCCCEEEEEEe--cCCCEEEEEECCcEEEeeHHHEEEc
Confidence            3579999999999999999999999999754  5789999999999999999999854

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.57  E-value=4.6e-15  Score=103.09  Aligned_cols=64  Identities=28%  Similarity=0.528  Sum_probs=55.1

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCccCC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDETG   99 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~~   99 (290)
                      +...+++|+|+|.+..++||+|++||+|.|+.....+++||.|+ .+|+.||||.+||+.+...+
T Consensus         4 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~   68 (71)
T 1u5s_A            4 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP   68 (71)
T ss_dssp             CSSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSC
T ss_pred             CccEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeCCCCEEEEeHHHEEECCCCC
Confidence            34578999999999999999999999999975433578999997 69999999999999886543

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.57  E-value=4.5e-15  Score=102.85  Aligned_cols=62  Identities=31%  Similarity=0.635  Sum_probs=54.2

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++.++||+|++||+|.|+.....+++||.|+++|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            6 SGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             SSEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECSSCEEEEEGGGEEECCCC
T ss_pred             CCcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEECCcEEEechHHeEECCCC
Confidence            34689999999999999999999999999754223789999999999999999999987653

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=6.3e-15  Score=101.53  Aligned_cols=59  Identities=29%  Similarity=0.732  Sum_probs=53.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++..+||+|++||+|.|+.  ..+++||.|+++|+.||||.+||+.+..+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~--~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLE--DSNEDWWKGKIQDRIGFFPANFVQRLSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEE--CCCSSEEEEECSSCEEEEETTTEEECCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEE--eCCCCEEEEEECCcEEEEehHHeEECCCC
Confidence            468999999999999999999999999975  36789999999999999999999988654

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.56  E-value=6.6e-15  Score=102.86  Aligned_cols=62  Identities=31%  Similarity=0.641  Sum_probs=54.2

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      .....++|+|+|.++.++||+|++||+|.|+.....+++||.|+++|+.||||.+||+.+..
T Consensus         7 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A            7 KSKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             SSCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             CCccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEECCeEEEEchHHEEECCc
Confidence            34578999999999999999999999999975422378999999999999999999998764

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.56  E-value=3.9e-15  Score=99.22  Aligned_cols=56  Identities=36%  Similarity=0.716  Sum_probs=50.6

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+
T Consensus         2 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            2 PTYVQALFDFDPQEDGELGFRRGDFIHVMDN--SDPNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEECceECCCCcCCcCCCCCCEEEEEEc--CCCCEEEEEECCcEEEEchHHeEEC
Confidence            4579999999999999999999999999753  5789999999999999999999865

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.56  E-value=2.8e-15  Score=101.32  Aligned_cols=58  Identities=36%  Similarity=0.696  Sum_probs=51.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      .+++|+|+|.++.++||+|++||+|.|+.. ..+++||.|+.+|+.||||.+||+.+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            2 VDYIVEYDYDAVHDDELTIRVGEIIRNVKK-LQEEGWLEGELNGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEE-CSSTTEEEEEETTEEEEEEGGGEEECC-
T ss_pred             EEEEECccCCcCCcCCcCCcCCCEEEEEEe-cCCCCEEEEEECCcEEEechHHEEECCC
Confidence            469999999999999999999999999743 2578999999999999999999998764

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.56  E-value=7.4e-15  Score=103.46  Aligned_cols=61  Identities=33%  Similarity=0.706  Sum_probs=53.8

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCC---eeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG---QTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g---~~G~~P~~yv~~~~~~   98 (290)
                      +...+++|||+|.++.++||+|++||+|.|+.  ..+++||.|++.+   +.||||.+||+.+...
T Consensus         8 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~--~~~~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~   71 (76)
T 2ed1_A            8 NKVRRVKTIYDCQADNDDELTFIEGEVIIVTG--EEDQEWWIGHIEGQPERKGVFPVSFVHILSDS   71 (76)
T ss_dssp             CCCEEEEESSCCCCSSSSBCCCCSSCEEEESS--CCSSSEEEEEETTCTTCEEEEEGGGEEECCCC
T ss_pred             CCCeEEEECccCCCCCcCCcCcCCCCEEEEEE--ecCCCEEEEEECCCCCCEEEEehHHeEECCCC
Confidence            34578999999999999999999999999974  3678999999865   9999999999988654

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=7e-15  Score=101.27  Aligned_cols=59  Identities=24%  Similarity=0.461  Sum_probs=53.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      .++++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQ--TTADWWWGERAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEEC--CSSSEEEEECTTCCEEEESSSEECCCCS
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEc--CCCCEEEEEECCeEEEEehHHeEECCCC
Confidence            3689999999999999999999999999754  5789999999999999999999987653

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.56  E-value=3.9e-15  Score=103.73  Aligned_cols=60  Identities=38%  Similarity=0.732  Sum_probs=53.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++..+||+|++||+|.|+. ...+.+||.|+++|+.||||.+||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~-~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVH-PSQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCC-BCSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEE-ecCCCCeEEEEECCcEEEecHHHEEECCCC
Confidence            467999999999999999999999999874 235789999999999999999999988654

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=5.4e-15  Score=104.17  Aligned_cols=62  Identities=27%  Similarity=0.519  Sum_probs=54.8

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG   99 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~   99 (290)
                      ....+++|||+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+....
T Consensus         8 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (76)
T 2epd_A            8 EGVVEAVACFAYTGRTAQELSFRRGDVLRLHER--ASSDWWRGEHNGMRGLIPHKYITLPAGTE   69 (76)
T ss_dssp             SCCEEEEESSCEECSSTTBCEECTTCEEEEEEE--EETTEEEEEETTEEEEEESSSEECCSSCS
T ss_pred             CCCEEEEECcCCCCCCCCccCCCCCCEEEEEEe--CCCCEEEEEECCcEEEEehHHEEEcCCCC
Confidence            345789999999999999999999999999754  46899999999999999999999886543

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=105.70  Aligned_cols=61  Identities=28%  Similarity=0.345  Sum_probs=53.3

Q ss_pred             CCccEEEEeccccCC--CCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSR--NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~--~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ....+++|||+|.+.  ..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus        14 ~~~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   76 (88)
T 2dbk_A           14 NGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRM--NINGQWEGEVNGRKGLFPFTHVKIFDPQ   76 (88)
T ss_dssp             CCCEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEE--CTTSCEEEECSSCEEEECTTTEEECCSS
T ss_pred             CCCEEEEEcccccCCCCCCCcccCCCCCEEEEEEe--cCCCEEEEEeCCCEEEEehHHeEECCCC
Confidence            345689999999955  999999999999999754  5789999999999999999999987643

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.56  E-value=4.8e-15  Score=98.78  Aligned_cols=55  Identities=35%  Similarity=0.784  Sum_probs=50.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINK--DDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC--SSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEe--cCCCEEEEEECCcEEEechHHeEEC
Confidence            579999999999999999999999999754  6789999999999999999999865

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.55  E-value=7.2e-15  Score=107.64  Aligned_cols=62  Identities=50%  Similarity=0.931  Sum_probs=54.1

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++..+||+|++||+|.|+.....+++||+|+++|+.||||.+||+.+...
T Consensus         4 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            4 GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             SCCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CCEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            45679999999999999999999999999754223789999999999999999999987643

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.55  E-value=6.2e-15  Score=98.95  Aligned_cols=56  Identities=38%  Similarity=0.763  Sum_probs=50.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKE--DPSGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEE--CTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEe--cCCCEEEEEECCEEEEEcHHHEEEC
Confidence            3679999999999999999999999999754  5789999999999999999999753

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=7.5e-15  Score=102.31  Aligned_cols=59  Identities=27%  Similarity=0.521  Sum_probs=53.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (72)
T 2dl8_A            9 PIEAIAKFDYVGRTARELSFKKGASLLLYQR--ASDDWWEGRHNGIDGLIPHQYIVVQDTS   67 (72)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCEEEEEEE--EETTEEEEEETTEEEEECSSSEEECCSS
T ss_pred             CEEEEECccCCcCCCCEeccCCCCEEEEEee--cCCCEEEEEECCEEEEEchHHeEEcCCC
Confidence            4689999999999999999999999999754  4678999999999999999999987654

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.55  E-value=7.5e-15  Score=100.82  Aligned_cols=58  Identities=36%  Similarity=0.662  Sum_probs=50.3

Q ss_pred             CccEEEEeccccCCCCCC-CccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCC
Q psy7076          37 EYRRYRAIYEFVSRNGDE-LSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPC   95 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~e-Ls~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~   95 (290)
                      ...+++|+|+|.++..++ |+|++||+|.|+. ...+++||.|+  .+|++||||.|||+.+
T Consensus         6 ~~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~-~~~~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            6 GRMRVKAIFSHAAGDNSTLLSFKEGDLITLLV-PEARDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CCCEEEESSCBCCCSCTTBCCBCTTCEEEECS-SSCBTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCeEEEEccccCCCCCCCCccCCCCCEEEEee-ccCCCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            456899999999988777 9999999999963 23577999999  5899999999999875

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.55  E-value=2.8e-15  Score=106.15  Aligned_cols=60  Identities=33%  Similarity=0.666  Sum_probs=54.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ....++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||++||+.+...
T Consensus        17 ~~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~--~~~gWw~g~~~g~~G~fP~nyV~~~~~~   76 (79)
T 1z9q_A           17 AAPRAEALFDFTGNSKLELNFKAGDVIFLLSR--INKDWLEGTVRGATGIFPLSFVKILKDF   76 (79)
T ss_dssp             SCCCEEESSCCCCSSTTBCCCCTTCCBCCCEE--SSSSEEEEEETTEEEEEEGGGEEESSCC
T ss_pred             CceEEEEcCccCCCCCCcccccCCCEEEEeEe--cCCCEEEEEECCeEEEecHHHEEECCCC
Confidence            34679999999999999999999999999754  5789999999999999999999988654

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.55  E-value=1.4e-14  Score=96.46  Aligned_cols=56  Identities=29%  Similarity=0.526  Sum_probs=51.0

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .++|+|||.++.++||+|++||+|.|+++.+++||.|++..+   |+.|+||++||+.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~---g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKD---GSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTT---CCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecCCCcEEEEECCC---CCEEEechHHeEEC
Confidence            389999999999999999999999999999999999998744   34899999999985

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.55  E-value=5.4e-15  Score=101.56  Aligned_cols=58  Identities=29%  Similarity=0.380  Sum_probs=52.1

Q ss_pred             cEEEEeccccCC--CCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSR--NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~--~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..++|||+|.++  ..+||+|++||+|.|+..  .+++||.|+++|++|+||++||+.+...
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   61 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRM--NINGQWEGEVNGRKGLFPFTHVKIFDPQ   61 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEE--CSSSEEEEEETTEEEEEEGGGEEECCSC
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEe--cCCCeEEEEeCCcEEEEehHHeEECCCc
Confidence            368999999998  999999999999999754  5789999999999999999999987653

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=8.9e-15  Score=100.76  Aligned_cols=59  Identities=36%  Similarity=0.701  Sum_probs=53.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+..
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDM--SDTNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             CSEEEEESSCCCCCSTTBCCCCSSCEEEEEEC--SCSSEEEEESSSCEEEEETTTEEECCC
T ss_pred             CcEEEEECceECCCCCCcccCCCCCEEEEEEc--CCCCEEEEEECCcEEEEehHHeEEcCC
Confidence            35689999999999999999999999999754  678999999999999999999998754

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.55  E-value=1.3e-14  Score=101.44  Aligned_cols=59  Identities=37%  Similarity=0.688  Sum_probs=53.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (73)
T 2dbm_A            7 GPCCRALYDFEPENEGELGFKEGDIITLTNQ--IDENWYEGMLHGHSGFFPINYVEILVAL   65 (73)
T ss_dssp             CCEEEESSCBCCCSTTCCCBCTTCEEECCBC--SSSSEEEEEETTEEEEEESSSEEESSCC
T ss_pred             CCEEEEccccCCCCCCCccCCCCCEEEEEEe--cCCCEEEEEECCCEEEechHHEEEccCC
Confidence            4689999999999999999999999999753  5789999999999999999999987653

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.55  E-value=6.5e-15  Score=98.12  Aligned_cols=55  Identities=42%  Similarity=0.932  Sum_probs=50.2

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      .+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            4 IQVKALYDYDAQTGDELTFKEGDTIIVHQK--DPAGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEEC--CTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEe--cCCCEEEEEECCcEEEEeHHHEEEC
Confidence            579999999999999999999999999754  5789999999999999999999753

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.55  E-value=9.3e-15  Score=102.67  Aligned_cols=59  Identities=22%  Similarity=0.403  Sum_probs=52.4

Q ss_pred             ccEEEEeccccCCC-------CCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRN-------GDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~-------~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ..+++|||+|.++.       .+||+|++||+|.|+. ...+++||.|+++|++||||++||+.++.
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~-~~~~~gWw~g~~~g~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYG-PMDDQGFYYGELGGHRGLVPAHLLDHMSL   72 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEES-CCCTTCEEEEESSSCEEEEETTTEEECCC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeE-ccCCCCEEEEEECCcEEEEChHHeEEccC
Confidence            46899999999999       9999999999999973 23578999999999999999999998753

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.54  E-value=7.2e-15  Score=102.69  Aligned_cols=59  Identities=36%  Similarity=0.728  Sum_probs=53.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.|+||.+||+.+.+
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (73)
T 3c0c_A           12 DQPSCKALYDFEPENDGELGFREGDLITLTNQ--IDENWYEGMLHGQSGFFPLSYVQVLVP   70 (73)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEE--CSSSEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             CCeEEEECccCCCCCCCCccCcCCCEEEEEEe--cCCCEEEEEECCCEEEeChHHEEECCC
Confidence            35789999999999999999999999999754  578999999999999999999997754

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.54  E-value=1.2e-14  Score=100.16  Aligned_cols=59  Identities=32%  Similarity=0.622  Sum_probs=53.3

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQ--IDQNWYEGEHHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEC--CSTTEEEEECSSCEEEEETTTEEECCSC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEe--cCCCEEEEEECCCEEEEchHHEEECCCC
Confidence            4689999999999999999999999999743  5789999999999999999999987653

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.54  E-value=6.7e-15  Score=101.37  Aligned_cols=58  Identities=28%  Similarity=0.628  Sum_probs=49.2

Q ss_pred             ccEEEEeccccCCCCC-CCccCCCCEEEEccccCC---CCCeEEEee-CCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGD-ELSFQPGDIIMVPVKQNA---EPGWLAGEL-RGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~-eLs~~~Gd~v~v~~~~~~---~~~W~~g~~-~g~~G~~P~~yv~~~   95 (290)
                      ..+++|+|+|.++.++ ||+|++||+|.|+...+.   +++||.|++ +|+.|+||+|||+.+
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            4679999999999999 999999999999854321   469999999 899999999999753

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=100.04  Aligned_cols=59  Identities=39%  Similarity=0.762  Sum_probs=53.4

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.++++|+.||||.+||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILE--GEDGWWTVERNGQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGCCBCCCS
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEEC--CCCCEEEEEECCCEEEEehHHeEEcCCC
Confidence            4679999999999999999999999999754  6789999999999999999999987653

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.54  E-value=9e-15  Score=99.46  Aligned_cols=57  Identities=44%  Similarity=0.797  Sum_probs=51.8

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            7 LVVRAKFNFQQTNEDELSFSKGDVIHVTRV--EEGGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC--CTTSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             EEEEEccccCCcCcCcccCCCCCEEEEeEe--cCCCEEEEEECCCEEEEehHHeEEcCC
Confidence            579999999999999999999999999743  578999999999999999999997753

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.54  E-value=1.1e-14  Score=103.70  Aligned_cols=60  Identities=28%  Similarity=0.475  Sum_probs=52.8

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCC-eEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPG-WLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~-W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++..+||+|++||+|.|+..  .+++ ||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~gWw~g~~~g~~G~fP~~yv~~~~~~   69 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTSLLPFKRNDIITITFK--DQENKWFMGQLNGKEGSFPVDHVEILLSD   69 (80)
T ss_dssp             CCCEEEESSCBCCCSSSSCCBCSSEEEEEEEE--SSSSSEEEEEETTEEEEEEGGGEEEESSC
T ss_pred             CCeEEEECCCCCcCCCCCcCCCCCCEEEEEEe--cCCCCEEEEEECCcEEEechHHEEECCCC
Confidence            35789999999999999999999999999754  3455 999999999999999999987654

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=101.99  Aligned_cols=60  Identities=38%  Similarity=0.624  Sum_probs=52.4

Q ss_pred             ccEEEEeccccCCC-------CCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRN-------GDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~-------~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.       .+||+|++||+|.|+.. ...++||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~-~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   73 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGE-IDEDGFYYGELNGQKGLVPSNFLEEVSGP   73 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESS-CCSSSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEe-cCCCCeEEEEECCcEEEEehHHEEECCCC
Confidence            46899999999998       99999999999999743 23358999999999999999999988653

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.54  E-value=5.3e-15  Score=99.31  Aligned_cols=54  Identities=28%  Similarity=0.547  Sum_probs=49.6

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCccc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE   93 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~   93 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHR--ASEDWWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEE--EETTEEEEEETTEEEEEEGGGEE
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEe--cCCCEEEEEECCeEEEEeHhhEE
Confidence            4689999999999999999999999999754  46799999999999999999986

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.54  E-value=1.2e-14  Score=103.23  Aligned_cols=61  Identities=25%  Similarity=0.550  Sum_probs=52.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccC--CCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN--AEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~--~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|||+|.++..+||+|++||+|.|+...+  .+++||.|+.+|+.||||.+||+.+...
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCC
Confidence            457999999999999999999999999975421  1379999999999999999999987654

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.54  E-value=2.3e-14  Score=96.76  Aligned_cols=58  Identities=17%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ..++|+|+|.++.++||+|++||+|.|++..++|||.|+...+|   +.|+||++||+++.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~g---~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRTG---ARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTTC---CEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecCCCEEEEEECCCC---CEEEechHHEEECc
Confidence            45899999999999999999999999999999999999965444   48999999999874

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.54  E-value=9.2e-15  Score=97.35  Aligned_cols=55  Identities=33%  Similarity=0.626  Sum_probs=50.4

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      .+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+..
T Consensus         2 ~~a~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~~   56 (58)
T 4e6r_A            2 IPAFVXFAYVAEREDELSLVXGSRVTVMEX--CSDGWWRGSYNGQIGWFPSNYVLEE   56 (58)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEE--CTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECccCCCCCCCEeeEeCCCEEEEeEc--CCCCEEEEEECCcEEEEehHHEEEC
Confidence            579999999999999999999999999754  5789999999999999999999865

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=104.39  Aligned_cols=61  Identities=31%  Similarity=0.575  Sum_probs=54.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|||+|.++..+||+|++||+|.|+.....+++||.|+++|+.|+||.+||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESSSCEEEEETTSEEECCCS
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEECCEEEEechHHeEECCCc
Confidence            4689999999999999999999999999743336789999999999999999999987653

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.54  E-value=1.1e-14  Score=99.99  Aligned_cols=61  Identities=23%  Similarity=0.458  Sum_probs=53.2

Q ss_pred             CceEEeccCCCC--CCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         219 EIATVLAPYTAT--SSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       219 ~~~~a~~dy~~~--~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      .+++|+|+|.++  .++||+|++||+|.|+++.++|||.|++.     |+.|+||++||+.+....++
T Consensus         2 ~~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~fP~~yv~~~~~~~~~   64 (67)
T 2bzy_A            2 VFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN-----GRKGLFPFTHVKIFDPQNPD   64 (67)
T ss_dssp             EEEEECSCBCSEEECTTBCCBCTTCEEEEEEECSSSEEEEEET-----TEEEEEEGGGEEECCSCC--
T ss_pred             cEEEEeeeECCCCCCCCccccCCCCEEEEEEecCCCeEEEEeC-----CcEEEEehHHeEECCCcCcC
Confidence            468999999999  99999999999999999999999999875     34899999999998765543

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=8.2e-15  Score=101.78  Aligned_cols=62  Identities=26%  Similarity=0.433  Sum_probs=54.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEcccc-CCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ-NAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~-~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ....++|+|+|.++.++||+|++||+|.|+... ..+++||.|+.+|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            6 SGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCS
T ss_pred             CcEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            346899999999999999999999999997541 12789999999999999999999987653

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.8e-14  Score=102.44  Aligned_cols=59  Identities=24%  Similarity=0.421  Sum_probs=53.3

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...|+|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~--~~~gWw~g~~~g~~G~~P~~yv~~~~~~   66 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEK--QESGWWYVRFGELEGWAPSHYLVLDENE   66 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEE--CTTSEEEEEETTEEEEEETTTEECCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEe--CCCCeEEEEECCCEEEEEhHHeEECCCC
Confidence            3679999999999999999999999999754  5689999999999999999999988653

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=2e-14  Score=104.20  Aligned_cols=60  Identities=32%  Similarity=0.625  Sum_probs=53.8

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++..+||+|++||+|.|+..  .+++||.|++.|+.||||.+||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDD--SDANWWKGENHRGIGLFPSNFVTTNLNI   75 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEEC--SCSSSEEEEETTEEEEECGGGEESCSSC
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEe--CCCCEEEEEECCcEEEEehHHEEEcCCc
Confidence            45789999999999999999999999999753  5789999999999999999999987653

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.54  E-value=9.5e-15  Score=95.88  Aligned_cols=53  Identities=42%  Similarity=0.775  Sum_probs=47.7

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCccc
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE   93 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~   93 (290)
                      +++|+|+|.++.++||+|++||+|.|+.. ...++||.|+.+|+.|+||.+||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRG-DDGSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEEC-CCSSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEe-cCCCCEEEEEECCeEEEeeHHHcC
Confidence            68999999999999999999999999753 224799999999999999999985

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=1.5e-14  Score=103.16  Aligned_cols=60  Identities=28%  Similarity=0.601  Sum_probs=54.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDA--SNKDWWWGQIDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEEC--CSSSEEEEECSSCEEEEEGGGEEESSCC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEE--cCcCEEEEEECCCEEEechHHEEEcCCc
Confidence            45789999999999999999999999999754  5789999999999999999999988654

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=7.1e-15  Score=101.86  Aligned_cols=60  Identities=27%  Similarity=0.587  Sum_probs=53.9

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+..  .+++||.|++.|+.||||.+||+.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (70)
T 2ega_A            7 GLEQYVVVSNYKKQENSELSLQAGEVVDVIEK--NESGWWFVSTSEEQGWVPATYLEAQNSG   66 (70)
T ss_dssp             CCBCEECCSCCCCCSSSSCCCCTTCBCEEEEE--CTTSEEEEECSSCEEEEEGGGCEESCCC
T ss_pred             CCcEEEECceECCCCCCcccCCCCCEEEEEEc--cCCCeEEEEECCCEEEEehHHcEECCCC
Confidence            34679999999999999999999999999754  5789999999999999999999987654

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.54  E-value=1.4e-14  Score=100.66  Aligned_cols=60  Identities=27%  Similarity=0.562  Sum_probs=53.8

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+..  .+++||.|++.|+.||||.+||+.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   66 (71)
T 2dnu_A            7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRK--NLEGWWYIRYLGKEGWAPASYLKKAKDS   66 (71)
T ss_dssp             CSEEEECSSCBCCSSTTBCCBCTTCEEEECCC--CSSSEEEEEETTEEEEEEGGGCEECCCC
T ss_pred             CCCEEEECCccCCCCCCCCcCCCCCEEEEeEC--CCCCeEEEEECCcEEEEEHHHeEEccCC
Confidence            34689999999999999999999999999743  5689999999999999999999988654

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.54  E-value=1.2e-14  Score=99.19  Aligned_cols=56  Identities=36%  Similarity=0.634  Sum_probs=50.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ..+++|+|+|.++..+||+|++||+|.|+..  .+++||.|+.+|+.|+||.+||+.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            9 GITAIALYDYQAAGDDEISFDPDDIITNIEM--IDDGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             CSCEEECSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ceEEEEEeeECCCCcCEeeEecCCEEEEEEe--cCCCEEEEEECCcEEEEehHHeEEC
Confidence            3579999999999999999999999999743  5789999999999999999999865

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.54  E-value=1.6e-14  Score=99.44  Aligned_cols=61  Identities=26%  Similarity=0.474  Sum_probs=52.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|++.++|...+.|+||++||+++
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            4569999999999999999999999999999999999999985431015899999999875

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.54  E-value=7.1e-15  Score=101.56  Aligned_cols=59  Identities=32%  Similarity=0.670  Sum_probs=52.9

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+..   +++||.|+.+|+.||||.+||+.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (69)
T 1uhf_A            7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQK---DGEWWTGSIGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEE---ETTEEEECSTTCCEEECGGGCEECCCC
T ss_pred             CCCEEEEeeeECCCCcCccCCCCCCEEEEEEe---CCCEEEEEeCCcEEEEchHHeEECCCC
Confidence            34689999999999999999999999999753   688999999999999999999987653

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.54  E-value=3e-14  Score=99.51  Aligned_cols=61  Identities=33%  Similarity=0.518  Sum_probs=53.3

Q ss_pred             CCceEEeccCCCC--CCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTAT--SSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~--~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|+|.+.  .++||+|++||+|.|+++.+++||+|++.  |   +.|+||++||+.+....+
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~--g---~~G~fP~~yv~~~~~~~~   71 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMGTWMGLLN--N---KVGTFKFIYVDVLSSGPS   71 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSSCEEEECS--S---CEEEECSTTEEECCCCSC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCCeEEEEEC--C---CEEEEeHHHEEECCCCCC
Confidence            3469999999975  99999999999999999999999999875  3   389999999999876543

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.53  E-value=1.1e-14  Score=101.78  Aligned_cols=59  Identities=27%  Similarity=0.603  Sum_probs=52.2

Q ss_pred             CCCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      ......++|+|+|.++..+||+|++||+|.|+..  .+++||.|++  +|+.||||.+||+++
T Consensus        12 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           12 GTGVTLFVALYDYEAITEDDLSFHKGEKFQILNS--SEGDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             CSTTCEEEESSCBCCSSTTBCCBCTTCEEEEEEC--SSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCCCEEEEECccCCCCCCCcceEeCCCEEEEEEe--cCCCeEEEEECCCCCEEEEEHHHeEEC
Confidence            3345789999999999999999999999999743  5688999998  999999999999875

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2.9e-14  Score=98.18  Aligned_cols=60  Identities=25%  Similarity=0.695  Sum_probs=53.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|++.  |   +.|+||++||+.+...+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~   66 (68)
T 2dl4_A            7 GNTYVALYKFVPQENEDLEMRPGDIITLLEDSNEDWWKGKIQ--D---RIGFFPANFVQRLSGPS   66 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCCSSEEEEECS--S---CEEEEETTTEEECCCCC
T ss_pred             CCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCCEEEEEEC--C---cEEEEehHHeEECCCCC
Confidence            567999999999999999999999999999999999999964  3   48999999999986543

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.53  E-value=1.5e-14  Score=100.42  Aligned_cols=60  Identities=25%  Similarity=0.592  Sum_probs=53.3

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+.. ..+++||.|++  +|+.||||.+||+.+...
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDD-KKSKDWWMCQLVDSGKSGLVPAQFIEPVRDK   67 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEES-SSCSSEEEEEETTTCCEEEEEGGGEEETTTS
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEEC-CCCCCCEEEEECCCCCeEEechHHeEECCCc
Confidence            4789999999999999999999999999753 23789999999  999999999999987653

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.53  E-value=1e-14  Score=97.80  Aligned_cols=56  Identities=41%  Similarity=0.767  Sum_probs=48.9

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC-CeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~-g~~G~~P~~yv~~~   95 (290)
                      .+++|+|+|.++.++||+|++||+|.|+.. ..+++||.|++. |+.||||.+||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGE-EDEQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSC-CCSSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEc-cCCCCceEEEeCCCCEEEecHHHEEEC
Confidence            569999999999999999999999999743 235699999996 99999999999853

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.53  E-value=1.2e-14  Score=97.51  Aligned_cols=57  Identities=26%  Similarity=0.606  Sum_probs=50.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+.. ..+++||.|+.  +|+.||||++||+.+
T Consensus         2 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            2 MERGIVQYDFMAESQDELTIKSGDKVYILDD-KKSKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEES-SSCSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEeeeECCCCCCCccCCCCCEEEEEeC-CCCCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            3579999999999999999999999999742 24789999998  999999999999753

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=2e-14  Score=101.95  Aligned_cols=59  Identities=34%  Similarity=0.604  Sum_probs=53.3

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEM--IDDGWWRGVCKGRYGLFPANYVELRQSG   75 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEE--CSSSEEEEEETTEEEEEETTSEEECCCC
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEe--cCCCeEEEEECCcEEEechHHEEECCCC
Confidence            4579999999999999999999999999754  5789999999999999999999987654

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.53  E-value=8.3e-15  Score=99.94  Aligned_cols=57  Identities=32%  Similarity=0.654  Sum_probs=51.0

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+ .+|+.||||++||+...+
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDK--PEEQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC--SSSSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEe--cCCCeEEEEECCCCEEEEChHHEeecCC
Confidence            579999999999999999999999999753  568999999 599999999999987754

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.53  E-value=7.5e-15  Score=101.43  Aligned_cols=59  Identities=31%  Similarity=0.496  Sum_probs=51.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccC-CCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN-AEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~-~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|+|+|.++.++||+|++||+|.|+.... .+++||.|+.+|+.||||.+||+.+..
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCC
Confidence            57999999999999999999999999975421 168999999999999999999997753

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.53  E-value=9.1e-15  Score=106.68  Aligned_cols=63  Identities=33%  Similarity=0.671  Sum_probs=55.4

Q ss_pred             CCCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCC
Q psy7076          35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG   99 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~   99 (290)
                      .....+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+....
T Consensus        15 ~~~~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~--~~~gWw~g~~~g~~G~fPsnyV~~~~~~~   77 (92)
T 2o2o_A           15 ERRRRRCQVAFSYLPQNDDELELKVGDIIEVVGE--VEEGWWEGVLNGKTGMFPSNFIKELSGES   77 (92)
T ss_dssp             SCSSCEEEECSCBCCCSSSCCCBCSSCEEECCCG--GGSSCBCCEETTEECCBCSSSEECCSSCS
T ss_pred             CCCCeEEEEccccCCCCCccccccCCCEEEEeEe--cCCCEEEEEECCeEEEeehHHEEECCCCC
Confidence            3445789999999999999999999999999754  57899999999999999999999886543

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.53  E-value=1.5e-14  Score=102.43  Aligned_cols=60  Identities=38%  Similarity=0.702  Sum_probs=53.8

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            6 SGRRAKALLDFERHDDDELGFRKNDIITIISQ--KDEHCWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEEECCC
T ss_pred             CceEEEECccCCCCCCCCccCCCCCEEEEEEe--cCCCEEEEEECCCEEEEehHHEEECCCc
Confidence            34789999999999999999999999999743  6789999999999999999999987654

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.53  E-value=9.7e-15  Score=96.92  Aligned_cols=55  Identities=33%  Similarity=0.673  Sum_probs=49.0

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+ .+|+.|+||++||+.+
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDK--PEEQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC--SSSSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEe--cCCCcEEEEeCCCCEEEEeHHHEEEC
Confidence            468999999999999999999999999753  568999999 5999999999999753

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.53  E-value=1.1e-14  Score=96.98  Aligned_cols=55  Identities=38%  Similarity=0.784  Sum_probs=50.1

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP   94 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~   94 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||++||++
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            3 VKVFRALYTFEPRTPDELYFEEGDIIYITDM--SDTNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEE
T ss_pred             cEEEEECccCCCCCCCCccCCCCCEEEEEEe--CCCCEEEEEECCCEEEEehHHEEe
Confidence            3579999999999999999999999999753  678999999999999999999974

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.53  E-value=1.2e-14  Score=99.22  Aligned_cols=57  Identities=33%  Similarity=0.543  Sum_probs=50.8

Q ss_pred             ccEEEEeccccC-CCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCCc
Q psy7076          38 YRRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD   96 (290)
Q Consensus        38 ~~~~~al~~~~~-~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~~   96 (290)
                      ..+++|||+|.+ +.++||+|++||+|.|+..  .+++||.|+  .+|+.||||++||+.+.
T Consensus         5 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNE--LEDGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             TCEEEESSCBCCCTTSSBCCBCTTCEEEEEEE--CTTSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CcEEEEccccCCCCCCCcCcCCCCCEEEEeEe--cCCCEEEEEECCCCCEEEEEhHHeEECc
Confidence            367999999999 9999999999999999753  578999999  48999999999998763

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.53  E-value=1.3e-14  Score=97.98  Aligned_cols=56  Identities=36%  Similarity=0.700  Sum_probs=50.7

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|++.|+.||||.+||+..
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDD--SDANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEESC
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEe--CCCCEEEEEECCCEEEechhHEEEe
Confidence            4689999999999999999999999999753  6789999999999999999999753

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.53  E-value=1.3e-14  Score=99.95  Aligned_cols=55  Identities=27%  Similarity=0.495  Sum_probs=49.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCC-----eeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRG-----QTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g-----~~G~~P~~yv~~~   95 (290)
                      .+++|+|+|.++.++||+|++||+|.|+..  .+++||.|++.+     +.|+||.+||+.+
T Consensus         8 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            8 FKVVAQFPYKSDYEDDLNFEKDQEIIVTSV--EDAEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             EEEEESSCBCCSCTTBCCBCTTCEEEEEEE--CSSSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             EEEEECeeECcCCcCCCCCCCCCEEEEEEe--cCCCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            589999999999999999999999999754  678999999855     9999999999864

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.53  E-value=1.5e-14  Score=105.43  Aligned_cols=63  Identities=29%  Similarity=0.545  Sum_probs=54.8

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   98 (290)
                      ....+++|||+|.++..+||+|++||+|.|+.....+++||+|+ .+|+.||||.+||+.+...
T Consensus        15 ~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   78 (91)
T 1wx6_A           15 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDG   78 (91)
T ss_dssp             CCCEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECTTCCEEEEEGGGEEEEEES
T ss_pred             CccEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeCCCCEEEEchHHEEECCCc
Confidence            44578999999999999999999999999975433578999998 5999999999999987654

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.53  E-value=2.3e-14  Score=97.69  Aligned_cols=58  Identities=33%  Similarity=0.622  Sum_probs=51.8

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      .++|+|||.++.++||+|++||+|.|+++.++|||.|+..     |+.|+||++||+.+....
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~fP~~yv~~~~~~~   60 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVDKNWLEGEHH-----GRLGIFPANYVEVLPLEH   60 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCTTTCEEEEET-----TEEEEECGGGEEECCCC-
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecCCCEEEEEEC-----CcEEEEehhhEEEcCCCC
Confidence            5899999999999999999999999999999999999965     348999999999976543

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.53  E-value=2.7e-14  Score=95.48  Aligned_cols=56  Identities=30%  Similarity=0.793  Sum_probs=50.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|++.     |+.|+||++||+++
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            4 GSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN-----GRTGWFPSNYVREI   59 (59)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             CcEEEECceeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEEC-----CcEEEEeHHHEEEC
Confidence            457999999999999999999999999999999999999974     34899999999874

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.52  E-value=1.8e-14  Score=101.44  Aligned_cols=59  Identities=42%  Similarity=0.741  Sum_probs=53.1

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+..
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRV--EEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSC--CSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             CCEEEEECccCCcCCCCcccCCCCCEEEEEEe--cCCCEEEEEECCCEEEechHHEEECCc
Confidence            34689999999999999999999999999743  578999999999999999999998754

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.9e-14  Score=100.87  Aligned_cols=60  Identities=20%  Similarity=0.456  Sum_probs=52.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC-CeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~-g~~G~~P~~yv~~~~~~   98 (290)
                      .++++|||+|.++.++||+|++||+|.|+... .+++||.|++. |+.||||.+||+.+...
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   73 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDG-DMEDWVKARNKVGQVGYVPEKYLQFPTSS   73 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECC-SSSSEEEEECTTCCEEEEETTTSCCSCCC
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEecc-CCCCcEEEEeCCCCEEEEEhHHEEECCCC
Confidence            46899999999999999999999999997542 24899999985 99999999999988654

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.52  E-value=5.9e-15  Score=101.66  Aligned_cols=59  Identities=36%  Similarity=0.713  Sum_probs=53.1

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGE--VEEGWWEGVLNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEE--EETTEEEECSTTCCEEEETTSEEECCSS
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEc--CCCCeEEEEECCcEEEEchHHEEECCCC
Confidence            4679999999999999999999999999754  5689999999999999999999988654

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.52  E-value=1.4e-14  Score=97.77  Aligned_cols=57  Identities=21%  Similarity=0.510  Sum_probs=51.1

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      +...++|+|+|.++..++|+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            5 GKELVLVLYDYQEKSPRELTVKKGDILTLLNS--TNKDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             -CCEEEECSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCEEEEECcCCCCCCCCCccCCCCCEEEEeEe--cCCCeEEEEECCEEEEEEHHHEEEC
Confidence            34689999999999999999999999999753  5689999999999999999999865

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.52  E-value=1.2e-14  Score=101.02  Aligned_cols=58  Identities=24%  Similarity=0.529  Sum_probs=50.4

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCD   96 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~   96 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+.. ..+++||.|+ .+|+.||||.+||+...
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAV-TKDPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEE-CSSTTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeEC-CCCCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            3679999999999999999999999999752 3678999999 59999999999998753

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.52  E-value=2.7e-14  Score=95.80  Aligned_cols=56  Identities=32%  Similarity=0.704  Sum_probs=51.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|++.     ++.|+||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            5 SPQCKALYAYDAQDTDELSFNANDIIDIIKEDPSGWWTGRLR-----GKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEEC-----CEEEEEcHHHEEEC
Confidence            456999999999999999999999999999999999999984     34899999999874

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.52  E-value=1e-14  Score=98.53  Aligned_cols=55  Identities=35%  Similarity=0.597  Sum_probs=49.9

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+  .+|+.|+||++||+.+
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~~~g~~G~fP~~yv~~~   60 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYYAIEV   60 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEE--CTTSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEe--cCCCEEEEEECCCCCEEEechHHEEEC
Confidence            569999999999999999999999999743  678999999  4999999999999876

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=101.19  Aligned_cols=59  Identities=37%  Similarity=0.701  Sum_probs=52.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++..+||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.++.
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           12 ALTYGVALYRFQALEPNELDFEVGDKIRILAT--LEDGWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             -CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE--CSTTEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CCeEEEECccCCCCCCCcCCCCCCCEEEEEEc--cCCCEEEEEECCcEEEEChHHeEECCC
Confidence            35689999999999999999999999999754  578999999999999999999998754

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.52  E-value=1.5e-14  Score=106.55  Aligned_cols=62  Identities=26%  Similarity=0.445  Sum_probs=54.2

Q ss_pred             CCccEEEEeccccCCC------CCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSRN------GDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~------~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      .....|+|||+|.++.      .+||+|++||+|.|+. ...+++||.|++ +|+.||||.|||+.+...
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~-~~~~~gWw~g~~~~g~~G~~Psnyv~~~~~~   83 (96)
T 1wie_A           15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYG-DMDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             SCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEES-SCCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CCCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeE-ecCCCCEEEEEECCCCEEEEchHHEEEcCCC
Confidence            4457899999999988      9999999999999972 236789999999 999999999999988654

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.6e-14  Score=102.49  Aligned_cols=60  Identities=32%  Similarity=0.696  Sum_probs=53.7

Q ss_pred             CCCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      .....+++|||+|.++.++||+|++||+|.|+..   +++||.|++  +|+.||||.+||+.+..
T Consensus        14 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~---~~gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           14 KGDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ---EDGWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             CSSCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE---ETTEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCCCCEEEECeeECCCCcCCcCCCCCCEEEEEEe---CCCEEEEEECCCCCEEEEchHHEEECCC
Confidence            3445789999999999999999999999999743   789999998  99999999999998764

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.52  E-value=2.2e-14  Score=98.42  Aligned_cols=58  Identities=29%  Similarity=0.548  Sum_probs=52.1

Q ss_pred             CCceEEeccCCCC--CCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTAT--SSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~--~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      +.+++|+|+|.++  .++||+|++||+|.|+++.++|||.|++.     |+.||||++||+.+..
T Consensus         6 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~-----g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            6 PIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSGQWEGECN-----GKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             SCBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTSEEEEEET-----TEEEEEEGGGBCCBCS
T ss_pred             CEEEEEeEEECCCCCCCCccccCCCCEEEEEEecCCCEEEEEEC-----CCEEEEehHhEEEcCC
Confidence            4579999999999  89999999999999999999999999875     3489999999998754

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.52  E-value=1.4e-14  Score=99.76  Aligned_cols=59  Identities=31%  Similarity=0.662  Sum_probs=51.8

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCc
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCD   96 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~   96 (290)
                      +...+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+ .+|+.||||.+||+.+.
T Consensus         8 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A            8 STGEEYIAVGDFTAQQVGDLTFKKGEILLVIEK--KPDGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             -CCEEEEECSCBCCSSSSCCCBCSSEEEEECSC--CSSSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCCCEEEEcccCCCCCCCcCCCCCCCEEEEEEc--CCCCeEEEEECCCCEEEEehHHeEECc
Confidence            334789999999999999999999999999753  577999999 59999999999998764

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.52  E-value=3.2e-14  Score=98.79  Aligned_cols=63  Identities=14%  Similarity=0.257  Sum_probs=53.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ..+++|+|+|.++.++||+|++||+|.|++..++|||.|+...+   |+.|+||++||+++....+
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~---g~~G~fP~~yv~~~~~~~~   68 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQAEDYWYEAYNMRT---GARGVFPAYYAIEVTKEPE   68 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTSEEEEEETTT---TEEEEEEGGGEEECC----
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEecCCCEEEEEECCC---CCEEEeehHHEEECCCCCC
Confidence            45699999999999999999999999999999999999996544   4589999999999876543

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.52  E-value=1.3e-14  Score=99.54  Aligned_cols=59  Identities=24%  Similarity=0.455  Sum_probs=52.1

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~   97 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+..  .+++||.|++.  |+.||||.+||+.+..
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            5 FTGEAIAKFNFNGDTQVEMSFRKGERITLLRQ--VDENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             TSEEEEECSCBCCSSTTBCCBCTTCEEEEEEE--CSSSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             CCEEEEECccCCcCCcCccCCCCCCEEEEEEe--cCCCEEEEEECCCCCEEEEChHHeEECCC
Confidence            45789999999999999999999999999753  57899999985  4999999999997753

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=3.2e-14  Score=99.07  Aligned_cols=62  Identities=27%  Similarity=0.596  Sum_probs=55.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+.+||.|++.  |   +.||||++||+.+....++
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~p~   70 (72)
T 2dl8_A            9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASDDWWEGRHN--G---IDGLIPHQYIVVQDTSGPS   70 (72)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEETTEEEEEET--T---EEEEECSSSEEECCSSSCC
T ss_pred             CEEEEECccCCcCCCCEeccCCCCEEEEEeecCCCEEEEEEC--C---EEEEEchHHeEEcCCCCCC
Confidence            456999999999999999999999999999988999999984  3   4899999999998766543

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=2.7e-14  Score=98.90  Aligned_cols=60  Identities=22%  Similarity=0.418  Sum_probs=52.2

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC-CeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~-g~~G~~P~~yv~~~~~   97 (290)
                      ...+++|||+|.++.++||+|++||+|.|+.. ..+++||.++.. |+.||||.+||+.+..
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~-~~~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            6 SGGHCVAIYHFEGSSEGTISMAEGEDLSLMEE-DKGDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             SSCEEEESSCBCCCSTTCCCBCTTCEEEEEEC-CSSSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             cCCEEEEcccCCCCCCCcCCCCCCCEEEEEec-cCCCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            35689999999999999999999999999753 235679999985 9999999999997754

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.52  E-value=1.7e-14  Score=96.06  Aligned_cols=54  Identities=33%  Similarity=0.788  Sum_probs=48.8

Q ss_pred             cEEEEeccc-cCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccC
Q psy7076          39 RRYRAIYEF-VSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP   94 (290)
Q Consensus        39 ~~~~al~~~-~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~   94 (290)
                      ++++|+|+| .++.++||+|++||+|.|+..  .+++||.|++.  |+.||||.+||++
T Consensus         1 p~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            1 PMFEAAYDFPGSGSPSELPLKKGDVIYITRE--EPSGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEEEEE--CTTSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             CEEEEecccCCCCCCCcCCCCCCCEEEEEEe--cCCCeEEEEECCCCCEEEecHHHEEE
Confidence            478999999 899999999999999999754  57889999985  9999999999975

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.52  E-value=1.7e-14  Score=103.11  Aligned_cols=60  Identities=20%  Similarity=0.474  Sum_probs=53.2

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ....++|||+|.++.++||+|.+||+|.|+..  .+++||.|+.+|+.||||++||+.+...
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~--~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           16 GKELVLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             -CCEEEESSCBCCSSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEECCTT
T ss_pred             CceEEEEccccCCCCCCccccCCCCEEEEEEe--cCCCEEEEEECCeEEEEEHHHEEECCCC
Confidence            45689999999999999999999999999754  5679999999999999999999987653

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=9.8e-15  Score=101.43  Aligned_cols=59  Identities=32%  Similarity=0.510  Sum_probs=52.3

Q ss_pred             ccEEEEeccccC-CCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~-~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.+ +.++||+|++||+|.|+..  .+++||.|+  .+|+.|+||.+||+.+..+
T Consensus         7 ~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~--~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2gqi_A            7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNE--LEDGWMWVTNLRTDEQGLIVEDLVEEVSGP   68 (71)
T ss_dssp             CCCEEESSCCCCCTTSSCCCCCTTCBCCCCEE--CSSSCEEEECTTTCCEEEECTTSEEECCCS
T ss_pred             CCEEEECcccCCCCCCCCCCCCCCCEEEEEEe--cCCCEEEEEECCCCCEEEeeHHHEEECCCC
Confidence            467999999999 9999999999999999754  578999999  5899999999999987543

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.52  E-value=1e-14  Score=99.45  Aligned_cols=58  Identities=33%  Similarity=0.759  Sum_probs=51.5

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      ...+++|+|+|.++..+||+|++||+|.|+..  .+++||.|+.+|+.|+||.+||+.+.
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            6 KKRQCKVLFEYIPQNEDELELKVGDIIDINEE--VEEGWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             --CEEEECSCBCCSSTTBCCBCTTCEEEEEEE--EETTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CCeEEEEeeeeCCCCcCCcCCCCCCEEEEEEe--cCCCEEEEEECCCEEEeehHHEEECc
Confidence            34689999999999999999999999999754  56899999999999999999998764

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.52  E-value=1.4e-14  Score=99.39  Aligned_cols=56  Identities=21%  Similarity=0.448  Sum_probs=51.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   95 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+. +|+.||||.+||+.+
T Consensus         2 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            2 SEIVVAMYDFQATEAHDLRLERGQEYIILEK--NDLHWWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             CSCEEECSCBCCSSSSBCCBCTTCEEEEEEC--SSSSEEEEECSSSCEEEEETTSEESS
T ss_pred             CeEEEECccCCCCCCCeecCCcCCEEEEEEc--cCCCcEEEEECCCCEEEEEhHhEEEc
Confidence            3579999999999999999999999999754  5789999994 999999999999987

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.52  E-value=4.6e-14  Score=101.78  Aligned_cols=58  Identities=28%  Similarity=0.525  Sum_probs=51.8

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++..+||+|++||+|.|+..  . ++||.|++  +|+.||||.+||+.+..
T Consensus        24 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~-~~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEE--S-GEWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             TSEEEEESSCCCCSSSSCCCCCTTCEEEEEEE--S-SSEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CCcEEEECccCCCCCCCcCcCCCCCEEEEEEc--C-CCeEEEEECCCCCEEEEehHHcEEccc
Confidence            34689999999999999999999999999754  3 59999999  99999999999998753

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-14  Score=101.04  Aligned_cols=56  Identities=39%  Similarity=0.795  Sum_probs=50.6

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP   94 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~   94 (290)
                      ...+++|||+|.++.++||+|++||+|.|+..  .+++||.|++.|+.||||.+||++
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~--~~~gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDD--SDPNWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEE--EETTEEEEECSSCEEECTTCCEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEe--cCCCEEEEEECCCEEEechhhCcc
Confidence            34689999999999999999999999999754  568999999999999999999974

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.52  E-value=2.3e-14  Score=98.36  Aligned_cols=59  Identities=32%  Similarity=0.698  Sum_probs=51.3

Q ss_pred             CccEEEEeccccC-CCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccCCc
Q psy7076          37 EYRRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD   96 (290)
Q Consensus        37 ~~~~~~al~~~~~-~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~   96 (290)
                      ...+++|+|+|.+ +.++||+|++||+|.|+.. ..+++||.|++.  |+.||||.+||+.+.
T Consensus         5 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~-~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            5 KKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIP-EEKDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCCEEEESSCBCCSSCSSBCCBCTTCEEEESSS-SCBTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CCEEEEEeecCCCCCCCCCCcCCCCCEEEEeEC-CCCCCcEEEEECCCCCEEEEehHHeEECC
Confidence            3468999999995 9999999999999999742 257899999986  999999999998764

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.51  E-value=1.4e-14  Score=99.24  Aligned_cols=58  Identities=19%  Similarity=0.316  Sum_probs=49.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|||+|.++.++||+|++||+|.|+..   +++||.|+. +|+.||||+|||+.+.+.
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~---~~~Ww~~~~~~g~~G~~Psnyv~~~~~~   62 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD---SKTWWRVRNAANRTGYVPSNYVERKLEH   62 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEEC---SSSSCEEECTTSCEEECCCCSEEEC---
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEec---CCCeEEEEeCCCCEEEeChHHEeEcCCC
Confidence            3579999999999999999999999999753   468999995 899999999999987654

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.51  E-value=4.6e-14  Score=100.37  Aligned_cols=62  Identities=24%  Similarity=0.433  Sum_probs=54.3

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCC-eEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG-WWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~g-W~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...+++|+|||.++..+||+|++||+|.|+++.+.+ ||+|++.     |+.|+||++||+.+....+
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~-----g~~G~fP~~yv~~~~~~~~   71 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQENKWFMGQLN-----GKEGSFPVDHVEILLSDVP   71 (80)
T ss_dssp             CCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESSSSSEEEEEET-----TEEEEEEGGGEEEESSCCC
T ss_pred             CCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecCCCCEEEEEEC-----CcEEEechHHEEECCCCCC
Confidence            456799999999999999999999999999998777 9999975     3489999999999876443

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.51  E-value=1.6e-14  Score=97.31  Aligned_cols=56  Identities=32%  Similarity=0.710  Sum_probs=50.3

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeee-eccCCcccCCc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEPCD   96 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G-~~P~~yv~~~~   96 (290)
                      .+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.| |||.+||+.++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEK--QDGGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEe--cCCCEEEEEECCeEEEEEChHHcEECC
Confidence            469999999999999999999999999754  578999999988886 99999998764

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.51  E-value=3.1e-14  Score=94.82  Aligned_cols=56  Identities=29%  Similarity=0.666  Sum_probs=50.9

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      .+++|+|||.++.++||+|++||+|.|+++.++|||.|++.     |+.|+||++||+++.
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH-----NKLGLFPANYVAPMM   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEECC
T ss_pred             eEEEECccCCCCCcCCCCCCCCCEEEEEEECCCCEEEEEEC-----CeEEEeeHHHeEEcc
Confidence            35899999999999999999999999999999999999984     348999999999864

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=3.3e-14  Score=97.87  Aligned_cols=59  Identities=24%  Similarity=0.455  Sum_probs=53.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|++.     ++.|+||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            7 GEAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDNWATVMFN-----GQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             SEEEEECSSCCCCSSSSCCCCTTCEEEECEECSSSCEEEEET-----TEEEEECSTTEEECCCS
T ss_pred             CCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCCEEEEEeC-----CCEEEeehHHeEECCCC
Confidence            467999999999999999999999999999999999999865     34899999999998653

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.51  E-value=3.8e-14  Score=99.52  Aligned_cols=59  Identities=22%  Similarity=0.453  Sum_probs=51.7

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee----CCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL----RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~----~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++ ++||+|++||+|.|+..  .+++||.+++    +|+.||||.+||+.++..
T Consensus         9 ~~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~--~~~gWw~g~~~~~~~g~~G~~P~~yv~~~~~~   71 (75)
T 2egc_A            9 LKDVYVSIADYEGD-EETAGFQEGVSMEVLER--NPNGWWYCQILDGVKPFKGWVPSNYLEKKNSG   71 (75)
T ss_dssp             CCEEEEECSCBCCC-SSSCCBCTTCEEEECEE--CTTSEEEEEECCSSSCEEEEEEGGGEEECCSC
T ss_pred             CCeEEEECCCcCCC-CCcCCCCCCCEEEEEEc--CCCCeEEEEeCCCCCCcEEEEehHHCEECCCC
Confidence            34689999999999 99999999999999754  5788999998    479999999999988653

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.51  E-value=1.9e-14  Score=103.02  Aligned_cols=59  Identities=25%  Similarity=0.451  Sum_probs=51.4

Q ss_pred             CCccEEEEeccc-cCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC------CeeeeccCCcccCCc
Q psy7076          36 SEYRRYRAIYEF-VSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR------GQTGWFPESYVEPCD   96 (290)
Q Consensus        36 ~~~~~~~al~~~-~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~------g~~G~~P~~yv~~~~   96 (290)
                      ....+++|+|+| .++..+||+|++||+|.|+..  .+++||.|++.      |+.||||++||+.+.
T Consensus        16 ~~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~--~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~   81 (83)
T 2ke9_A           16 RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQ--HPDGRWKGHIHESQRGTDRIGYFPPGIVEVVS   81 (83)
T ss_dssp             -CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCS--SCSSCEEEEECCSSTTSCCCEEECGGGEESSC
T ss_pred             CCCeEEEEccccCCCCCCCcccccCCCEEEEEEe--cCCCeEEEEECCCCCCCCCEEEechHHEEECC
Confidence            445789999999 899999999999999999743  56789999984      799999999999875

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.51  E-value=3.7e-14  Score=97.82  Aligned_cols=59  Identities=32%  Similarity=0.763  Sum_probs=52.5

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      .+++|+|||.++.++||+|++||+|.|+++.  ++|||.|++.     |+.|+||++||+.+....
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~~~gWw~g~~~-----g~~G~~P~~yV~~~~~~~   63 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN-----GRRGVFPDNFVKLLPPLE   63 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCSSTTEEEEEET-----TEEEEEEGGGEEECCSCC
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCCCCCEEEEEEC-----CcEEEecHHHEEECCCCc
Confidence            4589999999999999999999999999985  8899999974     348999999999986544

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.51  E-value=5.9e-14  Score=95.68  Aligned_cols=58  Identities=17%  Similarity=0.421  Sum_probs=51.9

Q ss_pred             CceEEeccCCC-CCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         219 EIATVLAPYTA-TSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       219 ~~~~a~~dy~~-~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ..++|+|+|.+ +.++||+|++||+|.|++..++|||.|+...+|   +.|+||++||+.+.
T Consensus         6 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g---~~G~~P~~yv~~~~   64 (65)
T 2j05_A            6 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTD---EQGLIVEDLVEEVG   64 (65)
T ss_dssp             CEEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTSEEEEEETTTC---CEEEEEGGGEEECC
T ss_pred             cEEEEccccCCCCCCCcCcCCCCCEEEEeEecCCCEEEEEECCCC---CEEEEEhHHeEECc
Confidence            45999999999 999999999999999999999999999965444   48999999999864

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.51  E-value=1.1e-14  Score=99.93  Aligned_cols=59  Identities=25%  Similarity=0.614  Sum_probs=52.4

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCc
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCD   96 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~   96 (290)
                      +...+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+ .+|+.||||.+||+.+.
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            6 SELKKVVALYDYMPMNANDLQLRKGDEYFILEE--SNLPWWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             SCCCEEEBSSCCCCSSSSSCCCCSSCEEECCCC--CSSSEECCBCTTSCBCCEETTTBCCSC
T ss_pred             CCCeEEEECccCCCCCCCCccCCCCCEEEEEEc--cCCCcEEEEECCCCEEEEchHhEEEcC
Confidence            345689999999999999999999999999753  568899998 59999999999999764

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.51  E-value=1.5e-14  Score=101.31  Aligned_cols=59  Identities=34%  Similarity=0.629  Sum_probs=51.2

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      ...+++|||+|.++.++||+|++||+|.|+.. ..+.+||.|+++|+.||||.+||+.+.
T Consensus         8 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            8 GSMEAIAKYDFKATADDELSFKRGDILKVLNE-ECDQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             --CEEEESSCBCCSSTTBCCBCTTCEEECCBC-SSCSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CCeEEEECccCCCCCCCeeeEcCCCEEEEeEe-cCCCCEEEEEECCCEEEEehHhEEEcC
Confidence            34679999999999999999999999999753 236789999999999999999998764

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.51  E-value=2.7e-14  Score=99.44  Aligned_cols=61  Identities=30%  Similarity=0.640  Sum_probs=53.0

Q ss_pred             CccEEEEeccccC-CCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVS-RNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~-~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.+ +.++||+|++||+|.|+.. ..+++||.|++.  |+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~-~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIP-EEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECCS-SCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             CceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEc-cCCCCcEEEEECCCCCEEEEehHHeEECCCC
Confidence            4578999999996 8999999999999999742 257899999996  99999999999988653

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.51  E-value=6.2e-14  Score=97.28  Aligned_cols=63  Identities=21%  Similarity=0.463  Sum_probs=54.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ..+++|+|||.++.+++|+|++||+|.|+++. ++|||.|++..+|   +.||||++||+.+.....
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~~~~~~~   69 (71)
T 2jt4_A            6 KKRGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSG---KSGLVPAQFIEPVRDKKH   69 (71)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTC---CEEEEEGGGEEETTTSSC
T ss_pred             CCEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCEEEEECCCC---CeEEechHHeEECCCcCC
Confidence            46799999999999999999999999999987 8999999985334   489999999999876543

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.51  E-value=3.4e-14  Score=94.64  Aligned_cols=55  Identities=33%  Similarity=0.696  Sum_probs=50.3

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      .++|+|+|+++.++||+|++||+|.|+++.++|||.|++.     |+.|+||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKEDGGWWEGQIN-----GRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCTTTEEEEEET-----TEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCCCCEEEEEEC-----CeEEEEehHHeEEcC
Confidence            3899999999999999999999999999999999999974     348999999999864

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=4.6e-14  Score=97.71  Aligned_cols=61  Identities=21%  Similarity=0.475  Sum_probs=54.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||+|++..++   +.||||++||+++...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g---~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQCDDGWFVGVSRRTQ---KFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSSCEEEEESSSC---CEEEECTTTEEETTCS
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEECCCCEEEEEECCCC---CEEEechHHeEECCCC
Confidence            567999999999999999999999999999999999999986443   4899999999997654

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.51  E-value=2.7e-14  Score=100.04  Aligned_cols=59  Identities=32%  Similarity=0.673  Sum_probs=53.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++.++||+|++||+|.|+..   +++||.|+++|+.||||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (74)
T 1j3t_A            9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ---QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE---CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CCeEEEECCCCCCCCCCccCCCCCCEEEEEec---CCCEEEEEECCcEEEEchHHeEECCCC
Confidence            34689999999999999999999999999754   368999999999999999999988654

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.51  E-value=3.8e-14  Score=95.07  Aligned_cols=56  Identities=29%  Similarity=0.573  Sum_probs=51.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|++.     |+.|+||++||+.+
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yv~~l   59 (60)
T 1w70_A            4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR-----GATGIFPLSFVKIL   59 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCcCCCCCccCCCCCEEEEEEeCCCCeEEEEEC-----CCEEEechHHEEEC
Confidence            456999999999999999999999999999999999999975     34899999999975

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.51  E-value=1.5e-14  Score=100.48  Aligned_cols=59  Identities=32%  Similarity=0.548  Sum_probs=51.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..  .+++||.|+  .+|+.|+||++||+.+...
T Consensus         6 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~G~fP~~yv~~~~~~   66 (71)
T 2fpf_A            6 EQTHRAIFRFVPRHEDELELEVDDPLLVELQ--AEDYWYEAYNMRTGARGVFPAYYAIEVTKE   66 (71)
T ss_dssp             CCCEEECSCBCCSSTTBCCBCTTCEEEEEEE--CTTSEEEEEETTTTEEEEEEGGGEEECC--
T ss_pred             CeEEEECeeECccCCCcccCcCCcEEEEeEe--cCCCEEEEEECCCCCEEEeehHHEEECCCC
Confidence            3579999999999999999999999999743  678999999  5999999999999887643

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.51  E-value=4e-14  Score=97.42  Aligned_cols=59  Identities=22%  Similarity=0.525  Sum_probs=52.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|++.     |+.|+||++||+.+...
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQIDENWYEGMIH-----GESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESSSSEEEEEET-----TEEEEEEGGGEEESCC-
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEEC-----CcEEEeeHHHEEEcCcc
Confidence            346999999999999999999999999999999999999974     34899999999997543

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.51  E-value=1.9e-14  Score=100.48  Aligned_cols=60  Identities=33%  Similarity=0.601  Sum_probs=53.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDETG   99 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~~   99 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|++  +|+.||||.+||+.+....
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~--~~~gWw~g~~~~~g~~G~~P~~yv~~~~~~~   66 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYK--HGQGWLVAENESGSKTGLVPEEFVSYIQPEL   66 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEE--ETTTEEEEECTTSSCEEEEESTTEEECCSSC
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEE--cCCCEEEEEECCCCCEEEeeHHHEEECCCCC
Confidence            3689999999999999999999999999754  6788999998  4999999999999876543

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.51  E-value=3.4e-14  Score=95.96  Aligned_cols=56  Identities=34%  Similarity=0.584  Sum_probs=50.1

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ++|+|+|.++.+++|+|++||+|.|+++ .++|||.|++.     |+.|+||++||+.+...
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~   60 (62)
T 2j6f_A            4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEEGWLEGELN-----GRRGMFPDNFVKEIKRE   60 (62)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEEET-----TEEEEEEGGGEEECC--
T ss_pred             EEECccCCcCCcCCcCCcCCCEEEEEEecCCCCEEEEEEC-----CcEEEechHHEEECCCC
Confidence            8999999999999999999999999999 88999999974     34899999999998654

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.51  E-value=2.8e-14  Score=98.20  Aligned_cols=58  Identities=26%  Similarity=0.491  Sum_probs=52.1

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+..   +++||.|+ .+|+.||||.+||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDH---SKRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEEC---SSSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEc---CCCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            4679999999999999999999999999754   48899999 6999999999999988654

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.51  E-value=2.3e-14  Score=100.11  Aligned_cols=59  Identities=22%  Similarity=0.512  Sum_probs=52.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+...
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   63 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFVPAAYVKKLDPA   63 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEECCC-
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEEC--CCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            4689999999999999999999999999753  5788999999999999999999987654

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.51  E-value=3.7e-14  Score=94.44  Aligned_cols=55  Identities=27%  Similarity=0.552  Sum_probs=50.4

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+++|+|||+++.++||+|++||+|.|+++.+++||.|++.     |+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLSPEWYKGSCN-----GRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecCCCEEEEEEC-----CcEEEeeHHHEEEc
Confidence            46899999999999999999999999999999999999974     34899999999875

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.51  E-value=3e-14  Score=98.34  Aligned_cols=59  Identities=31%  Similarity=0.625  Sum_probs=51.6

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCee-eeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~-G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+..  .+++||.|++.+.. ||||.+||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSK--EPGGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCC--CSSSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEc--CCCCeEEEEECCCCEEEEchHHcEECccC
Confidence            3679999999999999999999999999743  57799999996666 99999999987643

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.51  E-value=1.1e-14  Score=99.30  Aligned_cols=58  Identities=31%  Similarity=0.680  Sum_probs=52.0

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      +++|+|||.++.++||+|++||+|.|+++.++|||.|++.  |   +.|+||++||+.+....
T Consensus         3 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~--g---~~G~fP~~yv~~~~~~~   60 (65)
T 2fei_A            3 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN--N---KLGLFPSNFVKELELEH   60 (65)
T ss_dssp             EEECSSCCCCCSTTBCCCCTTCEEECCCCSSSSEEEEESS--S---CEEEEETTTSCBCCCCC
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEEC--C---cEEEecHHHEEEcCCCC
Confidence            5899999999999999999999999999999999999864  3   48999999999976544

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.51  E-value=1.6e-14  Score=104.64  Aligned_cols=58  Identities=29%  Similarity=0.705  Sum_probs=50.9

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccC---CCCCeEEEee-CCeeeeccCCcccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN---AEPGWLAGEL-RGQTGWFPESYVEP   94 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~---~~~~W~~g~~-~g~~G~~P~~yv~~   94 (290)
                      ....++|+|+|.++.++||+|++||+|.|+....   .+++||.|++ +|+.||||.+||++
T Consensus        28 ~~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           28 AGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CCcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            4568999999999999999999999999975321   3789999999 99999999999974

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.50  E-value=3.3e-14  Score=98.41  Aligned_cols=62  Identities=23%  Similarity=0.531  Sum_probs=54.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||+|++..+   ++.||||++||+.+...+
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~---g~~G~~P~~yv~~~~~~~   68 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGT---SRQGIFPITYVDVISGPS   68 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEETTEEEEEETTT---TEEEEECTTTEEESSSCC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCeEEEEECCC---CCEEEEchHHEEECCCCC
Confidence            45699999999999999999999999999998899999998753   358999999999986543

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.50  E-value=4.6e-14  Score=98.54  Aligned_cols=52  Identities=23%  Similarity=0.622  Sum_probs=48.5

Q ss_pred             EEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecC
Q psy7076         106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE  158 (290)
Q Consensus       106 ~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~  158 (290)
                      ++|+|+|.+ ..+||+|++||+|.|+++ +++||.++.+|+.|+||.+||+.+.
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   55 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD   55 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEecCCCEEEEEECCCEEEEehHHeEEcC
Confidence            678999998 899999999999999998 7899999999999999999999875

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.50  E-value=4.8e-14  Score=98.41  Aligned_cols=63  Identities=21%  Similarity=0.396  Sum_probs=54.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|+...+   |+.||||++||+.+....+
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~~~---g~~G~~P~~yv~~~~~~~~   67 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESG---SKTGLVPEEFVSYIQPELE   67 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETTTEEEEECTTS---SCEEEEESTTEEECCSSCC
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCCCEEEEEECCC---CCEEEeeHHHEEECCCCCC
Confidence            35699999999999999999999999999999999999998643   3489999999999865443

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=5.7e-14  Score=96.65  Aligned_cols=59  Identities=41%  Similarity=0.650  Sum_probs=52.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||+|++.  |   +.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            7 GEEFVAIADYAATDETQLSFLRGEKILILRQTTADWWWGERA--G---CCGYIPANHVGKHSGP   65 (68)
T ss_dssp             CCEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEECT--T---CCEEEESSSEECCCCS
T ss_pred             CCEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEEC--C---eEEEEehHHeEECCCC
Confidence            456999999999999999999999999999999999999965  3   3899999999987543

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.3e-14  Score=103.45  Aligned_cols=61  Identities=36%  Similarity=0.595  Sum_probs=54.0

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~~   98 (290)
                      ....+++|||+|.++..+||+|++||+|.|+..  .+++||.|++.  |+.||||.+||+.+...
T Consensus        15 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~~~g~~G~fP~~yv~~~~~~   77 (90)
T 2yup_A           15 LEYGEAVAQYTFKGDLEVELSFRKGEHICLIRK--VNENWYEGRITGTGRQGIFPASYVQVSREP   77 (90)
T ss_dssp             GGSEEEEECSCCCCCSSSBCCCCTTCEEEESSC--CCSSEEEEECTTTCCEEEEEGGGEEEEECC
T ss_pred             ccceEEEEeecCCcCCcCcCCCCCCCEEEEEEE--cCCCeEEEEECCCCCEEEEehHHeEEcCCC
Confidence            346789999999999999999999999999753  67899999985  99999999999987653

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.50  E-value=3.5e-14  Score=100.75  Aligned_cols=59  Identities=41%  Similarity=0.794  Sum_probs=53.1

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEK--KEEGWWFGSLNGKKGHFPAAYVEELPSN   65 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEC--CSSSCEEEESSSCEEEECSTTEEEESSC
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEc--CCCCEEEEEECCCEEEEEhHHeEECCCC
Confidence            3689999999999999999999999999743  5789999999999999999999987654

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.50  E-value=8.1e-14  Score=94.06  Aligned_cols=58  Identities=21%  Similarity=0.564  Sum_probs=50.4

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...+++|+|||.++.++||+|++||+|.|+++. ++||.|+...+|   +.|+||++||+++
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g---~~G~~P~~yv~~~   62 (62)
T 2iim_A            5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQS-GEWWKAQSLTTG---QEGFIPFNFVAKA   62 (62)
T ss_dssp             TTCEEEESSCBCCCSTTBCCBCTTCEEEEEECC-SSEEEEEETTTC---CEEEEEGGGEEEC
T ss_pred             CCcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC-CCEEEEEECCCC---CEEEEEHHHEEEC
Confidence            356799999999999999999999999999995 599999974333   4899999999874

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.50  E-value=5.1e-14  Score=93.74  Aligned_cols=55  Identities=31%  Similarity=0.695  Sum_probs=50.5

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+++|+|+|.++.+++|+|++||+|.|+++.++|||.|++.     |+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN-----NRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecCCCEEEEEEC-----CcEEEechHHeEEC
Confidence            46899999999999999999999999999999999999984     34899999999875

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.50  E-value=7.3e-14  Score=95.19  Aligned_cols=56  Identities=29%  Similarity=0.583  Sum_probs=51.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|++.     |+.|+||++||+.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            9 GITAIALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK-----GRYGLFPANYVELR   64 (65)
T ss_dssp             CSCEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             ceEEEEEeeECCCCcCEeeEecCCEEEEEEecCCCEEEEEEC-----CcEEEEehHHeEEC
Confidence            456999999999999999999999999999999999999964     34899999999986

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.50  E-value=3.4e-14  Score=98.06  Aligned_cols=58  Identities=31%  Similarity=0.775  Sum_probs=51.5

Q ss_pred             cEEEEecccc-CCCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~-~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~~   98 (290)
                      .+++|+|+|. ++..+||+|++||+|.|+..  .+++||.|++.  |+.||||.+||+.+...
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRD--EPSGWSLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEE--CTTSEEEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEe--cCCCeEEEEECCCCCEEEEehHHeEEcCCc
Confidence            5799999996 99999999999999999754  57899999985  99999999999987543

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.6e-14  Score=96.49  Aligned_cols=55  Identities=36%  Similarity=0.697  Sum_probs=49.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~   95 (290)
                      ++++|+|+|.++.++||+|++||+|.|+..  .+++||.|+..  |+.||||.+||+.+
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYK--HGQGWLVAENESGSKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEE--EETTEEEEECTTSSCEEEEEGGGEEEC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEc--CCCCeEEEEECCCCCEEEEehHHeEEC
Confidence            479999999999999999999999999754  57889999983  89999999999875

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.50  E-value=1.6e-14  Score=96.24  Aligned_cols=54  Identities=28%  Similarity=0.684  Sum_probs=47.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCccc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVE   93 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~   93 (290)
                      ++++|+|+|.++.++||+|++||+|.|+... .+++||.|++  +|+.||||.+||+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            2 MENKVLYAYVQKDDDEITITPGDKISLVARD-TGSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             -CCEECSCBCCCSTTBCCBCTTCCEEEEECC-SSSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             CEEEEeeeECCcCCCcccCCCCCEEEEeEcC-CCCCCEEEEECCCCCEEEEEHHHEE
Confidence            3589999999999999999999999997532 2379999999  9999999999986

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.50  E-value=1.9e-14  Score=98.14  Aligned_cols=55  Identities=22%  Similarity=0.542  Sum_probs=49.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC--------CeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--------GQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--------g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+..        |+.||||.+||+.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEEC--CSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEc--CCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            468999999999999999999999999753  57899999976        89999999999865

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.50  E-value=6.2e-14  Score=95.26  Aligned_cols=58  Identities=29%  Similarity=0.741  Sum_probs=52.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+++||.|++.     |+.|+||++||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGGWWEGTHN-----GRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET-----TEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecCCCEEEEEEC-----CCEEEEehHHeEEcCC
Confidence            456999999999999999999999999999999999999974     3489999999998753

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.50  E-value=6.2e-14  Score=96.49  Aligned_cols=59  Identities=31%  Similarity=0.656  Sum_probs=52.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||+++.++||+|++||+|.|+++.+++||.|++.     |+.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~   65 (68)
T 2djq_A            7 GPRAKALCNYRGKNPGDLKFNKGDVILLRRQLDENWYQGEIN-----GVSGIFPASSVEVISGP   65 (68)
T ss_dssp             CCEEEECSCCCSCCTTCCCCCTTCEEEEEECCCSSEEEEEET-----TEEEEEESSSEETTCSC
T ss_pred             ceEEEECCCCCCCCcCCccCCCCCEEEEEEecCCCEEEEEEC-----CcEEEeehHHEEEcCCC
Confidence            457999999999999999999999999999999999999964     34899999999987543

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.50  E-value=2.4e-14  Score=96.69  Aligned_cols=56  Identities=34%  Similarity=0.631  Sum_probs=50.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.++|||.|++.  |   +.|+||++||+.+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~   60 (62)
T 1k4u_S            5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--G---KVGIFPKVFVEDS   60 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECS--S---CEEEECGGGCCCS
T ss_pred             CeEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCCEEEEEEC--C---cEEEEeHHHEEEC
Confidence            557999999999999999999999999999999999999954  3   4899999999875

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=9.5e-14  Score=97.46  Aligned_cols=63  Identities=21%  Similarity=0.531  Sum_probs=54.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ...++|+|||.++ ++||+|++||+|.|+++.++|||++++...+ .++.||||++||+++....
T Consensus        10 ~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~gWw~g~~~~~~-~g~~G~~P~~yv~~~~~~~   72 (75)
T 2egc_A           10 KDVYVSIADYEGD-EETAGFQEGVSMEVLERNPNGWWYCQILDGV-KPFKGWVPSNYLEKKNSGP   72 (75)
T ss_dssp             CEEEEECSCBCCC-SSSCCBCTTCEEEECEECTTSEEEEEECCSS-SCEEEEEEGGGEEECCSCS
T ss_pred             CeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCCeEEEEeCCCC-CCcEEEEehHHCEECCCCC
Confidence            4569999999999 9999999999999999999999999986421 2468999999999987543

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.50  E-value=5.1e-14  Score=93.71  Aligned_cols=55  Identities=25%  Similarity=0.645  Sum_probs=50.5

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+++|+|+|.++.++||+|++||+|.|+++.+++||.|++.     ++.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH-----GQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCCCCEEEEEEC-----CcEEEEchHHeEEC
Confidence            56899999999999999999999999999999999999983     34899999999985

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.49  E-value=2.5e-14  Score=95.97  Aligned_cols=56  Identities=23%  Similarity=0.485  Sum_probs=50.4

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..   +++||.++. +|+.||||.+||+.+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD---RRQWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG---GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc---CCCeEEEEECCCCEEEEEHHHeEEccC
Confidence            468999999999999999999999999753   788999985 99999999999998754

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.49  E-value=5.5e-14  Score=96.45  Aligned_cols=59  Identities=22%  Similarity=0.522  Sum_probs=52.9

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..++|+|||+++.++||+|++||+|.|+++.+++||.|++..+   |+.|+||++||+.+..
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~---g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            7 GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDENWYEGRIPGT---SRQGIFPITYVDVIKR   65 (67)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEECTTS---SCEEEEEGGGEEEEEC
T ss_pred             EEEEECccCCcCCcCccCCCCCCEEEEEEecCCCEEEEEECCC---CCEEEEChHHeEECCC
Confidence            4589999999999999999999999999998999999998753   3489999999998753

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.49  E-value=7.9e-14  Score=93.44  Aligned_cols=57  Identities=25%  Similarity=0.560  Sum_probs=50.6

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+++|+|||.++.++||+|++||+|.|+++ .+++||.|+...+|   +.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKKSKDWWMCQLVDSG---KSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSSCSSEEEEEETTTC---CEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCCCCCCEEEEECCCC---CEEEEEHHHEEEC
Confidence            468999999999999999999999999998 58999999985333   4899999999874

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.3e-13  Score=99.80  Aligned_cols=61  Identities=26%  Similarity=0.539  Sum_probs=53.2

Q ss_pred             CCCceEEeccCCC--CCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         217 KPEIATVLAPYTA--TSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       217 ~~~~~~a~~dy~~--~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ...+++|+|||.+  +.++||+|++||+|.|+++.++|||+|++.  |   +.||||++||+.+....
T Consensus        15 ~~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~fP~~yv~~~~~~~   77 (88)
T 2dbk_A           15 GPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNINGQWEGEVN--G---RKGLFPFTHVKIFDPQN   77 (88)
T ss_dssp             CCEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTSCEEEECS--S---CEEEECTTTEEECCSSC
T ss_pred             CCEEEEEcccccCCCCCCCcccCCCCCEEEEEEecCCCEEEEEeC--C---CEEEEehHHeEECCCCC
Confidence            3567999999994  499999999999999999999999999875  3   38999999999987544

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.49  E-value=5e-14  Score=93.42  Aligned_cols=56  Identities=27%  Similarity=0.601  Sum_probs=49.2

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+++|+|||.++.++||+|++||+|.|+++.++|||.|+...    |+.|+||++||+++
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~----g~~G~~P~~yv~~~   57 (57)
T 1cka_A            2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSE----GKRGMIPVPYVEKY   57 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECTT----SCEEEEEGGGEEC-
T ss_pred             cEEEECCcCCCCCCCCCCCCCCCEEEEEEecCCCcEEEEeCC----CCEEEEeHHHEEEC
Confidence            358999999999999999999999999999899999999432    35899999999864

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.49  E-value=3.4e-14  Score=95.98  Aligned_cols=55  Identities=18%  Similarity=0.419  Sum_probs=48.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~   95 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..   +++||.|+  .+|+.||||.+||+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ---SGEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEEC---CSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CcEEEEcccCCCCCCCCcCCCCCCEEEEEEc---CCCEEEEEECCCCCEEEEEHHHEEEC
Confidence            3679999999999999999999999999754   35899999  4999999999999753

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=97.32  Aligned_cols=61  Identities=28%  Similarity=0.553  Sum_probs=54.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++.+.+||+|++.     ++.||||++||+.+....+
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~p~   77 (79)
T 1x69_A           17 GITAVALYDYQAAGDDEISFDPDDIITNIEMIDDGWWRGVCK-----GRYGLFPANYVELRQSGPS   77 (79)
T ss_dssp             CCCEEESSCCCCSSSSBCCCCTTCEEEEEEECSSSEEEEEET-----TEEEEEETTSEEECCCCCS
T ss_pred             CeEEEECccCCCCCCCCcCcCCCCEEEEeEecCCCeEEEEEC-----CcEEEechHHEEECCCCCC
Confidence            456999999999999999999999999999999999999975     3489999999999876543

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.49  E-value=5.4e-14  Score=93.62  Aligned_cols=56  Identities=36%  Similarity=0.819  Sum_probs=50.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      +..++|+|||+++.++||+|++||+|.|+++.+++||.+++.     ++.|+||++||+.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDPAGWWEGELN-----GKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCEEEEEEC-----CcEEEEeHHHEEEC
Confidence            345899999999999999999999999999999999999984     34899999999874

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.49  E-value=1.1e-13  Score=95.51  Aligned_cols=61  Identities=21%  Similarity=0.485  Sum_probs=53.7

Q ss_pred             CceEEeccCC-CCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         219 EIATVLAPYT-ATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       219 ~~~~a~~dy~-~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..++|+|||+ ++.++||+|++||+|.|+++.++|||.|++..+   |+.||||++||+.+....
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~---g~~G~~P~~yv~~~~~~~   64 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSGWSLAKLLDG---SKEGWVPTAYMTPYKDTR   64 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEETTS---SCEEEEEGGGEEECCSCS
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecCCCeEEEEECCC---CCEEEEehHHeEEcCCcc
Confidence            3589999996 999999999999999999999999999998744   348999999999976544

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=4.1e-14  Score=104.38  Aligned_cols=60  Identities=25%  Similarity=0.433  Sum_probs=52.7

Q ss_pred             ccEEEEeccccCC--------CCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSR--------NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~--------~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|||+|.++        ..+||+|++||+|.|+.. ..++|||+|+++|+.||||.+||+.+...
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~-~~~~gWw~g~~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGD-KDADGFYRGETCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEE-ECTTCEEEEEETTEEEEEETTTSEECCCC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEe-cCCCCeEEEEECCcEEEEehHHeEECCCC
Confidence            4679999999999        799999999999999743 24678999999999999999999988653

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1e-13  Score=98.80  Aligned_cols=62  Identities=23%  Similarity=0.522  Sum_probs=54.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ..+++|+|||+++.++||+|++||+|.|+++.+++||+|++.  |   +.||||++||+.+......
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~~~   71 (81)
T 2ysq_A           10 IVSAEAVWDHVTMANRELAFKAGDVIKVLDASNKDWWWGQID--D---EEGWFPASFVRLWVNQEDE   71 (81)
T ss_dssp             CEEEEESSCCCCSSSSSCCCCTTCEEEEEECCSSSEEEEECS--S---CEEEEEGGGEEESSCCCCC
T ss_pred             ceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcCEEEEEEC--C---CEEEechHHEEEcCCcccc
Confidence            566999999999999999999999999999999999999975  3   3899999999998664433

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.49  E-value=2.8e-14  Score=98.50  Aligned_cols=58  Identities=33%  Similarity=0.631  Sum_probs=52.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCD   96 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~   96 (290)
                      ...+++|+|+|.++..++|+|++||+|.|+..  .+++||.|+. +|+.||||.+||+...
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            5 TAPTVVALYDYTANRSDELTIHRGDIIRVFFK--DNEDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE--CSSSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             ccCEEEECccCCCCCcCcCCCCCCCEEEEEEe--cCCCeEEEEeCCCCEEEEchHHeEECc
Confidence            45689999999999999999999999999754  5789999998 9999999999998653

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.49  E-value=8.4e-14  Score=95.80  Aligned_cols=59  Identities=31%  Similarity=0.677  Sum_probs=52.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||+|++.  |   +.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g---~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            7 GRPARAKFDFKAQTLKELPLQKGDIVYIYKQIDQNWYEGEHH--G---RVGIFPRTYIELLSGP   65 (68)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEECS--S---CEEEEETTTEEECCSC
T ss_pred             CcEEEECccCCCCCcCCccCCCCCEEEEeEecCCCEEEEEEC--C---CEEEEchHHEEECCCC
Confidence            456999999999999999999999999999999999999954  3   4899999999998654

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.49  E-value=4.6e-14  Score=95.56  Aligned_cols=57  Identities=26%  Similarity=0.638  Sum_probs=51.0

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      ..++|+|+|.++..+||+|++||+|.|+.. ..+.+||.++.+|+.||||.+||+++.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            6 NLFVALYDFVASGDNTLSITKGEKLRVLGY-NHNGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TEEEESSCBCCCSSSBCCBCTTCEEEEEEE-CTTSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             EEEEEcceECCCCCCccCCCCCCEEEEEEe-CCCCCeEEEEECCCeEEEehHHeEECC
Confidence            579999999999999999999999999753 346679999999999999999998764

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=4.4e-14  Score=102.30  Aligned_cols=59  Identities=31%  Similarity=0.647  Sum_probs=53.3

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEK--CSDGWWRGSYNGQVGWFPSNYVTEEGDS   75 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEE--CTTSEEEEEETTEEEEEEGGGEEECCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEc--cCCCeEEEEECCcEEEEehHHEEECCCc
Confidence            4679999999999999999999999999754  5789999999999999999999987654

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.49  E-value=9.6e-14  Score=96.87  Aligned_cols=58  Identities=26%  Similarity=0.602  Sum_probs=52.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+.+||.|++...|   +.||||++||+++
T Consensus        15 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~~   72 (73)
T 3h0h_A           15 VTLFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTG---ETGYIPSNYVAPV   72 (73)
T ss_dssp             TCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEETTTC---CEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCcceEeCCCEEEEEEecCCCeEEEEECCCC---CEEEEEHHHeEEC
Confidence            567999999999999999999999999999999999999985434   4899999999986

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.49  E-value=1.1e-13  Score=96.62  Aligned_cols=60  Identities=32%  Similarity=0.777  Sum_probs=53.1

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+++.  ++|||.|++.     |+.|+||++||+.+...
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~-----g~~G~~P~~yv~~~~~~   69 (73)
T 2k9g_A            8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN-----GRRGVFPDNFVKLLPPD   69 (73)
T ss_dssp             SCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSTTEEEEEET-----TEEEEEEGGGEEECCSS
T ss_pred             CccEEEECccCCCCCCCeeeECCCCEEEEEECCCCCCCEEEEEEC-----CeEEEEchHHEEECCcc
Confidence            356799999999999999999999999999985  8999999974     34899999999997654

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.49  E-value=4.6e-14  Score=97.13  Aligned_cols=57  Identities=26%  Similarity=0.448  Sum_probs=50.9

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      ...++|||+|.++.++||+|++||+|.|+..   +++||.++. +|+.||||.+||+.+..
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDD---SRKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEEC---SSSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEc---CCCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            4689999999999999999999999999753   378999976 89999999999998754

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.49  E-value=2.9e-14  Score=96.87  Aligned_cols=55  Identities=38%  Similarity=0.841  Sum_probs=49.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.  +|+.||||.+||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            7 RTYRAMYDYSAQDEDEVSFRDGDYIVNVQP--IDDGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             -CEEESSCBCCCSTTBCCBCTTCEEEEEEE--CSSSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEEECeeeCCcCCCcCCCCCCCEEEEEEe--CCCCeEEEEECCCCCEEEEeHHHeEEC
Confidence            569999999999999999999999999744  5789999998  899999999999875

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.49  E-value=4.3e-14  Score=94.42  Aligned_cols=56  Identities=23%  Similarity=0.503  Sum_probs=50.8

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .++|+|||.++.++||+|++||+|.|+++.++|||.|+...+   |+.|+||++||+.+
T Consensus         3 ~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~---g~~G~~P~~yv~~~   58 (59)
T 1yn8_A            3 RAVALYDFEPENDNELRLAEGDIVFISYKHGQGWLVAENESG---SKTGLVPEEFVSYI   58 (59)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEECTTS---SCEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEEEcCCCCeEEEEECCC---CCEEEEehHHeEEC
Confidence            489999999999999999999999999999999999997643   34899999999975

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.49  E-value=8.4e-14  Score=102.13  Aligned_cols=61  Identities=33%  Similarity=0.731  Sum_probs=53.2

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCC--CCeEEEe--eCCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGE--LRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~--~~W~~g~--~~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|||+|.++.++||+|++||+|.|+.....+  ++||.|+  .+|+.|+||.+||+.+..
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~   79 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADE   79 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCS
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEccc
Confidence            346899999999999999999999999998653234  8999999  699999999999998764

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.49  E-value=3e-14  Score=98.64  Aligned_cols=59  Identities=24%  Similarity=0.459  Sum_probs=52.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC--CeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~--g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|++.  |+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            7 GGEAIAKFNFNGDTQVEMSFRKGERITLLRQ--VDENWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CBCEEESSCCCCCSTTBCCCCTTCBCEEEEE--EETTEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCEEEECccCCCCCcCCcCCCCCCEEEEEEe--cCCCeEEEEECCCCCEEEEchHHEEECCCC
Confidence            3579999999999999999999999999754  56799999995  49999999999988654

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.49  E-value=6.8e-14  Score=95.05  Aligned_cols=56  Identities=34%  Similarity=0.772  Sum_probs=50.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.  ++|||.|++.     |+.|+||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~-----g~~G~~P~~yv~~l   63 (64)
T 2jte_A            6 KEYCRTLFPYTGTNEDELTFREGEIIHLISKETGEAGWWKGELN-----GKEGVFPDNFAVQI   63 (64)
T ss_dssp             SEEEEESSCBCCSSSSBCCBCTTCEEEEEESCSSSTTEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             CEEEEECccCCccCCCccCCCCCCEEEEEECCCCCCCEEEEEEC-----CeEEEEeHHHEEEC
Confidence            45699999999999999999999999999985  7899999974     34899999999986

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.49  E-value=7e-14  Score=93.73  Aligned_cols=55  Identities=33%  Similarity=0.712  Sum_probs=49.6

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..++|+|||.++.++||+|++||+|.|+++.  +++||.|++.     |+.|+||++||+.+
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~l   60 (60)
T 1oot_A            4 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN-----GREGIFPANYVELV   60 (60)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCEeeEcCCCEEEEEEeCCCCCCeEEEEEC-----CEEEEEeHHHEEEC
Confidence            4589999999999999999999999999986  7899999984     34899999999874

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=1.2e-13  Score=98.39  Aligned_cols=61  Identities=30%  Similarity=0.461  Sum_probs=53.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc--CCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|||+++.++||+|++||+|.|+++  .+++||.|++.     ++.||||++||+.+.....
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~~~   79 (81)
T 1x43_A           17 NRKARVLYDYDAANSTELSLLADEVITVFSVVGMDSDWLMGERG-----NQKGKVPITYLELLNSGPS   79 (81)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEECCTTCCTTEEEEEET-----TEEEEEEGGGEEECCCCCC
T ss_pred             CeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCCCcEEEEEC-----CCEEEEehHHEEECCCCCC
Confidence            4569999999999999999999999999998  46899999964     3489999999999876544

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.49  E-value=5.2e-14  Score=97.99  Aligned_cols=58  Identities=21%  Similarity=0.378  Sum_probs=51.6

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++.++||+|++||+|.|+..   +++||.|+. +|+.||||.+||+.+..
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (72)
T 2jw4_A            6 EEVVVVAKFDYVAQQEQELDIKKNERLWLLDD---SKSWWRVRNSMNKTGFVPSNYVERKNS   64 (72)
T ss_dssp             CCEEEECSSCCCCSSTTSCCCCTTCEEEEEEC---SSSSEEEECTTSCEEEECTTSCEECCC
T ss_pred             CCeEEEECcCCCcCCCCcccCCCCCEEEEEEC---CCCEEEEEECCCCEEEEEhhHEEEcCC
Confidence            34689999999999999999999999999753   569999996 99999999999998754

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=9.2e-14  Score=95.61  Aligned_cols=58  Identities=26%  Similarity=0.660  Sum_probs=52.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|++.  |   +.||||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            7 GKVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK--G---RTGLIPSNYVAEQSG   64 (68)
T ss_dssp             SEEEEESSCCCCCSTTBCCCCSSCEEEEEECSCSSEEEEESS--S---CEEEEETTTEEECCC
T ss_pred             cEEEEECceECCCCCCcccCCCCCEEEEEEcCCCCEEEEEEC--C---cEEEEehHHeEEcCC
Confidence            456999999999999999999999999999999999999964  3   489999999999754

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.48  E-value=8.4e-14  Score=93.67  Aligned_cols=56  Identities=32%  Similarity=0.735  Sum_probs=50.2

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceee-EecCCceEEec
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVG-WFPASYVKVMG  279 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G-~fP~~~v~~~~  279 (290)
                      ..++|+|||.++.++||+|++||+|.|+++.+++||.|++.  ++   .| +||++||+.+.
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~--g~---~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            4 SAVKALFDYKAQREDELTFTKSAIIQNVEKQDGGWWRGDYG--GK---KQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--TE---EEEEEEGGGEEECC
T ss_pred             CEEEECcCCCcCCCCCcCCcCCCEEEEEEecCCCEEEEEEC--Ce---EEEEEChHHcEECC
Confidence            45999999999999999999999999999999999999985  32   54 99999999864

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.48  E-value=1e-13  Score=96.20  Aligned_cols=62  Identities=26%  Similarity=0.621  Sum_probs=53.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc--CCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++  .++|||.|+.. .   |+.||||++||+.+...+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~~~~~~   69 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-R---GQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEET-T---TEEEEEETTSEEECCCSCC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCCCCCCEEEEeC-C---CCEEEEeHHHEEECCCCCC
Confidence            4569999999999999999999999999999  78999999843 2   4589999999999876543

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=9.3e-14  Score=98.26  Aligned_cols=62  Identities=26%  Similarity=0.544  Sum_probs=54.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+.+||.|++.     ++.||||++||+.+......
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~~~~   68 (78)
T 2yuo_A            7 GRRAKALLDFERHDDDELGFRKNDIITIISQKDEHCWVGELN-----GLRGWFPAKFVEVLDERSKE   68 (78)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEEECCCCSC
T ss_pred             ceEEEECccCCCCCCCCccCCCCCEEEEEEecCCCEEEEEEC-----CCEEEEehHHEEECCCcCCC
Confidence            456999999999999999999999999999999999999975     34899999999998765443

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.48  E-value=8.6e-14  Score=94.86  Aligned_cols=58  Identities=26%  Similarity=0.571  Sum_probs=50.8

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      .+++|+|||.++.++||+|++||+|.|+++.+++||.|+.. +   |+.|+||++||+.+..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-E---GKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-T---SCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecCCCeEEEEEC-C---CCEEEEChHHEeecCC
Confidence            46899999999999999999999999999999999999943 1   3589999999998543

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=7.9e-14  Score=99.11  Aligned_cols=60  Identities=18%  Similarity=0.458  Sum_probs=53.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++.++|||++++.     ++.||||++||+++....
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~gWw~g~~~-----g~~G~~P~~yv~~~~~~~   67 (80)
T 2ekh_A            8 ATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQESGWWYVRFG-----ELEGWAPSHYLVLDENEQ   67 (80)
T ss_dssp             CEEEEECSCBCCSSTTSCCBCTTCEEEEEEECTTSEEEEEET-----TEEEEEETTTEECCCCCC
T ss_pred             CCEEEECCCCCCCCCCccCcCCCCEEEEEEeCCCCeEEEEEC-----CCEEEEEhHHeEECCCCC
Confidence            457999999999999999999999999999999999999975     348999999999986544

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.6e-13  Score=97.27  Aligned_cols=60  Identities=20%  Similarity=0.490  Sum_probs=52.6

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...+++|+|||.++.++||+|++||+|.|++. +.+||++++..+|   +.||||++||+.+..
T Consensus        16 ~~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g---~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           16 DSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-EGGWWKAISLSTG---RESYIPGICVARVSG   75 (79)
T ss_dssp             CCCEEEESSCSSCTTTSCCSSCTTCEEEEEEE-ETTEEEEEETTTC---CEEEEEGGGEEEECC
T ss_pred             CCeEEEEccCCCCCCCCcCCCCCCCEEEEEec-CCCeEEEEECCCC---CEEEeeHHHeEEccC
Confidence            35679999999999999999999999999994 7899999986443   489999999998764

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=1e-13  Score=96.76  Aligned_cols=60  Identities=30%  Similarity=0.628  Sum_probs=52.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc---CCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK---TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~---~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++   .+++||+|++.     |+.|+||++||+.+...+
T Consensus         8 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~~   70 (73)
T 2dl7_A            8 VCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFN-----GRIGVFPSVLVEELSSGP   70 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEET-----TEEEEECSSSEEECCSSC
T ss_pred             CEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEEC-----CCEEEEChHHEEECCCCC
Confidence            4569999999999999999999999999998   47899999964     348999999999986654

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=1.7e-13  Score=96.90  Aligned_cols=59  Identities=32%  Similarity=0.671  Sum_probs=53.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||+|++.     |+.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~gWw~g~~~-----g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDGWYEGVMN-----GVTGLFPGNYVESISGP   75 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECSSSEEEEEET-----TEEEEEETTSEEECSSS
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCCCCEEEEEEC-----CcEEEeChHHEEEcCCC
Confidence            456999999999999999999999999999999999999964     34899999999998654

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=6.3e-14  Score=96.98  Aligned_cols=59  Identities=34%  Similarity=0.666  Sum_probs=52.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+..  .+++||.|++  +|+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            7 GTPYRAMYQYRPQNEDELELREGDRVDVMQQ--CDDGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTEEEEEEEE--CSSSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CcEEEECccCCcCCcCCccCCCCCEEEEEEE--CCCCEEEEEECCCCCEEEechHHeEECCCC
Confidence            3679999999999999999999999999754  5789999998  499999999999987654

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=4.4e-14  Score=98.09  Aligned_cols=60  Identities=17%  Similarity=0.401  Sum_probs=53.0

Q ss_pred             CCceEEeccCCC-CCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTA-TSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~-~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...++|+|+|.+ +.++||+|++||+|.|+++.+++||+|+...+|   +.|+||++||+++..
T Consensus         7 ~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~~~g---~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            7 GRRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDGWMWVTNLRTD---EQGLIVEDLVEEVSG   67 (71)
T ss_dssp             CCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSSCEEEECTTTC---CEEEECTTSEEECCC
T ss_pred             CCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCCEEEEEECCCC---CEEEeeHHHEEECCC
Confidence            456999999999 999999999999999999999999999965443   489999999999854

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.48  E-value=8.8e-14  Score=94.42  Aligned_cols=58  Identities=22%  Similarity=0.497  Sum_probs=51.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+.+||.|++..+   ++.|+||++||+++
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~~~---g~~G~~P~~yv~~~   63 (64)
T 4f14_A            6 LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDGWMYGTVQRT---GRTGMLPANYIEFV   63 (64)
T ss_dssp             --CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEETTT---TEEEEEEGGGEEEC
T ss_pred             CEEEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCCeEEEEECCC---CCEEEEeHHHeEEC
Confidence            45699999999999999999999999999999999999998533   45899999999985

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.48  E-value=9.3e-14  Score=96.16  Aligned_cols=59  Identities=36%  Similarity=0.875  Sum_probs=52.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.  +++||+|++.  |   +.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~W~~g~~~--g---~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            7 GDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCIDVGWWEGELN--G---RRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             SEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCSSTTEEEEECS--S---CEEEEEGGGEEECCCC
T ss_pred             CcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCCCCCeEEEEEC--C---cEEEechHHeEECCCC
Confidence            45699999999999999999999999999985  8899999964  3   4899999999998653

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=8e-14  Score=96.47  Aligned_cols=61  Identities=31%  Similarity=0.559  Sum_probs=53.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+++||+|+...+|   +.|+||++||+++...
T Consensus         7 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~~~~~   67 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQDGWLKGLSLLTG---RTGIFPSDYVIPVSGP   67 (70)
T ss_dssp             SCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEETTEEEEEETTTC---CEEEEEGGGCEECCCT
T ss_pred             CcEEEECeeECcCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCC---CEEEEchHHeEECcCC
Confidence            456999999999999999999999999999988999999965444   4899999999998654

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.48  E-value=1.1e-13  Score=98.08  Aligned_cols=61  Identities=23%  Similarity=0.534  Sum_probs=52.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.++|||.|++..+|   +.|+||++||+.+...
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSEGDWWEARSLTTG---ETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECTTSSEEEEEETTTC---CEEEEEGGGEEEC---
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEECCCC---CEEEeehHHeEECCcc
Confidence            456999999999999999999999999999999999999985434   4899999999998653

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.47  E-value=4.6e-14  Score=100.97  Aligned_cols=63  Identities=19%  Similarity=0.493  Sum_probs=53.3

Q ss_pred             CCceEEeccC-CCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCC-CCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPY-TATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAK-GKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy-~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~-g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+||| .++.++||+|++||+|.|+++.+++||.|++... .+.|+.|+||++||+.+.+
T Consensus        18 ~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~gWw~G~~~~~~~~tg~~G~fPsnyV~~~~~   82 (83)
T 2ke9_A           18 SLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPDGRWKGHIHESQRGTDRIGYFPPGIVEVVSK   82 (83)
T ss_dssp             CEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSSCEEEEECCSSTTSCCCEEECGGGEESSCC
T ss_pred             CeEEEEccccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCCCCCCCEEEechHHEEECCC
Confidence            4569999999 8999999999999999999999999999998631 1124589999999998653

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=7.6e-14  Score=101.52  Aligned_cols=63  Identities=27%  Similarity=0.485  Sum_probs=55.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|||+++.++||+|++||+|.|+++.+++||+|++..+   ++.||||++||+.+.....
T Consensus        17 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~~---g~~G~fP~~yv~~~~~~~~   79 (90)
T 2yup_A           17 YGEAVAQYTFKGDLEVELSFRKGEHICLIRKVNENWYEGRITGT---GRQGIFPASYVQVSREPRL   79 (90)
T ss_dssp             SEEEEECSCCCCCSSSBCCCCTTCEEEESSCCCSSEEEEECTTT---CCEEEEEGGGEEEEECCCC
T ss_pred             ceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCCeEEEEECCC---CCEEEEehHHeEEcCCCcc
Confidence            34589999999999999999999999999998999999998644   3489999999999875443

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.47  E-value=1.7e-13  Score=97.09  Aligned_cols=59  Identities=25%  Similarity=0.569  Sum_probs=52.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCC----CCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT----TGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~----~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+    .+||++++.  |   +.||||++||+.+...
T Consensus        13 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~   75 (79)
T 1uhc_A           13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN--G---KKGYVPSNYIRKTESG   75 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESS--S---CEEEEEGGGEEECCSS
T ss_pred             CeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeC--C---CEEEEchHHeEECCCC
Confidence            457999999999999999999999999999876    899999854  3   4899999999997654

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.47  E-value=6.2e-14  Score=97.61  Aligned_cols=59  Identities=29%  Similarity=0.527  Sum_probs=51.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|||.++.++||+|++||+|.|+++ .+.+||.|++.  |   +.|+||++||+.+...
T Consensus        10 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A           10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--G---KTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESS--S---CEEEEEGGGEEECCSS
T ss_pred             ccEEEEccccCCcCCCEeCCcCCCEEEEEEecCCCCeEEEEEC--C---cEEEecHHHEEECCCC
Confidence            4569999999999999999999999999984 78899999964  3   4899999999998654

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.47  E-value=4.7e-14  Score=105.76  Aligned_cols=62  Identities=18%  Similarity=0.313  Sum_probs=51.9

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEcccc-CCCCCeEEEeeC--------CeeeeccCCcccCCcc
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ-NAEPGWLAGELR--------GQTGWFPESYVEPCDE   97 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~-~~~~~W~~g~~~--------g~~G~~P~~yv~~~~~   97 (290)
                      ....+++|||+|.++..+||+|++||+|.|+.+. ...++||.|++.        |++||||+|||+.+..
T Consensus        20 ~~~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~   90 (108)
T 1i1j_A           20 HPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   90 (108)
T ss_dssp             SCSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             ceeeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccc
Confidence            3457899999999999999999999999997541 123349999986        9999999999987654

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.47  E-value=6.8e-14  Score=97.39  Aligned_cols=61  Identities=30%  Similarity=0.616  Sum_probs=53.5

Q ss_pred             CCceEEeccCCC-CCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTA-TSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~-~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|+|.+ +.++||+|++||+|.|+++ .+++||+|++..+|   +.||||++||+.+...
T Consensus         7 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~gWw~g~~~~~g---~~G~fP~~yv~~~~~~   69 (72)
T 1spk_A            7 GQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTK---ARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             SCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTC---CEEEEEGGGCEECSSC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCCCcEEEEECCCC---CEEEEehHHeEECCCC
Confidence            456999999996 9999999999999999987 88999999987443   4899999999998654

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.47  E-value=7.5e-14  Score=95.75  Aligned_cols=59  Identities=31%  Similarity=0.617  Sum_probs=52.0

Q ss_pred             CCceEEeccCCC-CCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTA-TSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~-~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...++|+|||.+ +.++||+|++||+|.|+++ .++|||+|++..+|   +.||||++||+.+.
T Consensus         6 ~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            6 KQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKDGWLYGEHDVSK---ARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBTTEEEEEESSSC---CEEEEEGGGEEESC
T ss_pred             CEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCCCcEEEEECCCC---CEEEEehHHeEECC
Confidence            456999999996 9999999999999999996 88999999987443   48999999999864

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.47  E-value=1.1e-13  Score=93.30  Aligned_cols=56  Identities=29%  Similarity=0.682  Sum_probs=51.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|||.++.+++|+|++||+|.|+++.+.+||.|++.     |+.|+||++||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-----g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            6 KELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKDWWKIEVN-----GRQGFVPAAYLKKL   61 (62)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             CEEEEECcCCCCCCCCCccCCCCCEEEEeEecCCCeEEEEEC-----CEEEEEEHHHEEEC
Confidence            456999999999999999999999999999999999999974     34899999999986

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.47  E-value=3.9e-14  Score=98.05  Aligned_cols=59  Identities=36%  Similarity=0.597  Sum_probs=52.3

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..  .+++||.|+  .+|+.||||.+||+.+...
T Consensus         7 ~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2cuc_A            7 GNMFVALHTYSAHRPEELDLQKGEGIRVLGK--YQDGWLKGLSLLTGRTGIFPSDYVIPVSGP   67 (70)
T ss_dssp             SCCEECCSCBCCCSTTBCCBCTTCEEEEEEE--EETTEEEEEETTTCCEEEEEGGGCEECCCT
T ss_pred             CcEEEECeeECcCCCCcCCCCCCCEEEEEEe--cCCCeEEEEECCCCCEEEEchHHeEECcCC
Confidence            3579999999999999999999999999754  467999999  5999999999999987653

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.47  E-value=7.5e-14  Score=94.25  Aligned_cols=55  Identities=25%  Similarity=0.643  Sum_probs=50.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|++.  |   ..|+||++||++
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~   59 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH--R---GTGLFPSNFVTT   59 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--T---EEEEEEGGGEES
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCCCCEEEEEEC--C---CEEEechhHEEE
Confidence            456999999999999999999999999999999999999986  2   389999999986

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.47  E-value=1.3e-13  Score=94.60  Aligned_cols=56  Identities=30%  Similarity=0.570  Sum_probs=50.6

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+++|+|+|.++.+++|+|++||+|.|+++.+++||.|+.. .   |+.|+||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-Y---GSEGYIPSNYVTGK   58 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS-S---SCEEEEETTSEESS
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccCCCcEEEEEC-C---CCEEEEEhHhEEEc
Confidence            45899999999999999999999999999999999999953 2   34899999999997

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.47  E-value=9.2e-14  Score=96.44  Aligned_cols=57  Identities=18%  Similarity=0.397  Sum_probs=49.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEE-cCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRK-KTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~-~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...++|+|||.++.++||+|++||+|.|++ ..++|||.|+.. .   |+.|+||++||++.
T Consensus        11 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~   68 (71)
T 1csk_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-V---GREGIIPANYVQKR   68 (71)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSTTEEEEECT-T---SCEEEEETTSEEC-
T ss_pred             CCEEEEceeECcCCCCcCCCCCCCEEEEeECCCCCCCEEEEeC-C---CCEEEEehHHeEEc
Confidence            456999999999999999999999999999 688999999943 2   34899999999875

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.47  E-value=4.6e-14  Score=100.04  Aligned_cols=59  Identities=29%  Similarity=0.664  Sum_probs=51.1

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..  .+++||.|++  +|+.||||.+||+.+...
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~--~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   65 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNS--SEGDWWEARSLTTGETGYIPSIYLAPVDRL   65 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEEC--TTSSEEEEEETTTCCEEEEEGGGEEEC---
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEe--cCCCeEEEEECCCCCEEEeehHHeEECCcc
Confidence            3579999999999999999999999999743  5689999998  999999999999987643

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.47  E-value=5e-14  Score=94.48  Aligned_cols=55  Identities=29%  Similarity=0.651  Sum_probs=49.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||.|++.     |+.|+||++||+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~   60 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASEDWWEGRHN-----GIDGLVPHQYIVV   60 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEET-----TEEEEEEGGGEEC
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEEC-----CeEEEEeHhhEEC
Confidence            456999999999999999999999999999988999999984     3489999999973

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=5.9e-14  Score=99.02  Aligned_cols=60  Identities=33%  Similarity=0.670  Sum_probs=52.7

Q ss_pred             ccEEEEeccccCC-CCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSR-NGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~-~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   98 (290)
                      .++++|||+|.++ .++||+|++||+|.|+.. ..+++||.|+ .+|+.||||.+||+.+...
T Consensus         9 ~~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~-~~~~gW~~g~~~~g~~G~~P~~yv~~~~~~   70 (77)
T 2enm_A            9 ATKARVMYDFAAEPGNNELTVTEGEIITVTNP-NVGGGWLEGKNNKGEQGLVPTDYVEILPND   70 (77)
T ss_dssp             CEEEEESSCCCCCTTSSBCCCCTTCEEEEEES-CCSSSEEEEECTTCCEEEEETTTEEEECCC
T ss_pred             CcEEEECccCCCCCCCCeecCCCCCEEEEeEc-cCCCCeEEEEECCCCEEEeehHHeEECCCC
Confidence            3689999999999 999999999999999753 2368999999 6999999999999987654

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=7.7e-14  Score=96.57  Aligned_cols=61  Identities=28%  Similarity=0.616  Sum_probs=54.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|||+++.++||+|++||+|.|+++.+++||+|++.  |   +.||||++||+++....+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~~   68 (70)
T 2ega_A            8 LEQYVVVSNYKKQENSELSLQAGEVVDVIEKNESGWWFVSTS--E---EQGWVPATYLEAQNSGPS   68 (70)
T ss_dssp             CBCEECCSCCCCCSSSSCCCCTTCBCEEEEECTTSEEEEECS--S---CEEEEEGGGCEESCCCCC
T ss_pred             CcEEEECceECCCCCCcccCCCCCEEEEEEccCCCeEEEEEC--C---CEEEEehHHcEECCCCCC
Confidence            345999999999999999999999999999999999999965  3   489999999999876544

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.47  E-value=1.2e-13  Score=91.89  Aligned_cols=55  Identities=35%  Similarity=0.721  Sum_probs=49.7

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      .++|+|||.++.+++|+|++||+|.|+++.+.+||.|+..     |+.|+||++||+++.
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCSDGWWRGSYN-----GQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECTTSEEEEEET-----TEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCCCCEEEEEEC-----CcEEEEehHHEEECC
Confidence            4899999999999999999999999999999999999764     348999999999853

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.47  E-value=1.4e-13  Score=96.06  Aligned_cols=69  Identities=23%  Similarity=0.588  Sum_probs=54.1

Q ss_pred             eeccCCcccCCccCCCccceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCC
Q psy7076          85 GWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEA  159 (290)
Q Consensus        85 G~~P~~yv~~~~~~~~~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~  159 (290)
                      ||++..++...      ....++|+|+|.++..+||+|++||+|.|++. +++||.++.+|+.|+||++||+.+..
T Consensus         1 g~~~~~~~~~~------~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   70 (73)
T 3c0c_A            1 GAMDPEFMPPL------DQPSCKALYDFEPENDGELGFREGDLITLTNQIDENWYEGMLHGQSGFFPLSYVQVLVP   70 (73)
T ss_dssp             ---------CC------CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             CCCCcccCCCC------CCeEEEECccCCCCCCCCccCcCCCEEEEEEecCCCEEEEEECCCEEEeChHHEEECCC
Confidence            56666665422      35689999999999999999999999999988 78999999999999999999998763

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.47  E-value=7e-14  Score=95.24  Aligned_cols=58  Identities=31%  Similarity=0.697  Sum_probs=51.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++..++|+|++||+|.|+++.+++||.|++.     |+.|+||++||+.+..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yv~~~~~   64 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEEGWWSGTLN-----NKLGLFPSNFVKELEV   64 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEEET-----TEEEEEEGGGEEECC-
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCCEEEEEEC-----CCEEEeehHHEEECcC
Confidence            456999999999999999999999999999988999999964     3489999999998753

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.8e-13  Score=99.15  Aligned_cols=60  Identities=22%  Similarity=0.552  Sum_probs=53.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|||+++.++||+|++||+|.|+++.+++||+|++.  |   ..||||++||+.+....
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~   76 (88)
T 1x2q_A           17 ARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDANWWKGENH--R---GIGLFPSNFVTTNLNIE   76 (88)
T ss_dssp             CEEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSSSEEEEET--T---EEEEECGGGEESCSSCC
T ss_pred             CeEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCCEEEEEEC--C---cEEEEehHHEEEcCCcC
Confidence            457999999999999999999999999999999999999986  2   38999999999876543

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.47  E-value=1.2e-13  Score=96.38  Aligned_cols=62  Identities=24%  Similarity=0.596  Sum_probs=52.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+.+||.|++.     ++.||||++||+.+......
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~~~~   66 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN-----DRQGFVPAAYVKKLDPAQSA   66 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEECCC----
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCCCCeEEEEEC-----CcEEEEehHHeEECCCCCCC
Confidence            456999999999999999999999999999999999999965     34899999999998765433

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=92.19  Aligned_cols=54  Identities=24%  Similarity=0.634  Sum_probs=49.5

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      .+++|+|+|.++.++||+|++||+|.|+++.+++||.|++.     ++.|+||++||++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSDTNWWKGTSK-----GRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCCCCEEEEEEC-----CCEEEEehHHEEe
Confidence            46899999999999999999999999999999999999974     3489999999986

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.1e-13  Score=96.10  Aligned_cols=59  Identities=29%  Similarity=0.619  Sum_probs=52.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC---CCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT---TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~---~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.   +++||+|++.  |   +.||||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            7 GLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLH--G---RQGLAPANRLQILSGP   68 (71)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESS--S---CCEEEETTTEEECCCS
T ss_pred             cEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEEC--C---CEEEEehHHEEECCCC
Confidence            56799999999999999999999999999997   8999999954  3   3899999999997654

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.46  E-value=4.4e-14  Score=99.97  Aligned_cols=59  Identities=27%  Similarity=0.526  Sum_probs=53.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.++|||.|++.     |+.|+||++||+.+...
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~gWw~g~~~-----g~~G~fP~nyV~~~~~~   76 (79)
T 1z9q_A           18 APRAEALFDFTGNSKLELNFKAGDVIFLLSRINKDWLEGTVR-----GATGIFPLSFVKILKDF   76 (79)
T ss_dssp             CCCEEESSCCCCSSTTBCCCCTTCCBCCCEESSSSEEEEEET-----TEEEEEEGGGEEESSCC
T ss_pred             ceEEEEcCccCCCCCCcccccCCCEEEEeEecCCCEEEEEEC-----CeEEEecHHHEEECCCC
Confidence            456999999999999999999999999999999999999975     34899999999998654

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=96.07  Aligned_cols=58  Identities=28%  Similarity=0.491  Sum_probs=52.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|++.     |+.|+||++||+.+..
T Consensus        13 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           13 LTYGVALYRFQALEPNELDFEVGDKIRILATLEDGWLEGSLK-----GRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSTTEEEEEET-----TEEEEEEGGGEEEEC-
T ss_pred             CeEEEECccCCCCCCCcCCCCCCCEEEEEEccCCCEEEEEEC-----CcEEEEChHHeEECCC
Confidence            466999999999999999999999999999999999999965     3489999999999764

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.46  E-value=8.1e-14  Score=96.18  Aligned_cols=57  Identities=26%  Similarity=0.577  Sum_probs=51.3

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcC---CCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKT---TTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~---~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      .+++|+|||.++.++||+|++||+|.|+++.   ++|||.|++.     |+.|+||++||+.+..
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~   63 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLH-----GRQGIVPGNRLKILVG   63 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEET-----TEEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEEC-----CcEEEechhhEEECCC
Confidence            4589999999999999999999999999997   7999999964     3489999999998754

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=96.85  Aligned_cols=58  Identities=26%  Similarity=0.452  Sum_probs=51.3

Q ss_pred             CCceEEeccCCCCC-------CCceecCCCCEEEEEE-cCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATS-------SEQLSLSRGQLIMIRK-KTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~-------~~eLs~~~Gd~i~v~~-~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.       .+||+|++||+|.|++ ..++|||.|++.  |   +.|+||++||+.+..
T Consensus         7 ~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~--g---~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            7 GKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQGFYYGELG--G---HRGLVPAHLLDHMSL   72 (75)
T ss_dssp             SEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTTCEEEEESS--S---CEEEEETTTEEECCC
T ss_pred             CcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCCCEEEEEEC--C---cEEEEChHHeEEccC
Confidence            45799999999999       9999999999999997 578999999974  3   389999999999754

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.46  E-value=3.6e-14  Score=100.90  Aligned_cols=61  Identities=26%  Similarity=0.620  Sum_probs=51.4

Q ss_pred             CccEEEEeccccCCCCC-CCccCCCCEEEEccccCC---CCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGD-ELSFQPGDIIMVPVKQNA---EPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~-eLs~~~Gd~v~v~~~~~~---~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++..+ ||+|++||+|.|+.....   +++||.|++ +|+.||||.+||+.+..
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            45789999999999999 999999999999854221   138999999 89999999999998753

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.46  E-value=2.3e-13  Score=93.57  Aligned_cols=59  Identities=15%  Similarity=0.307  Sum_probs=51.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++. ++||.++.. +   |+.||||++||+.+...
T Consensus         8 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~---g~~G~~P~~yv~~~~~~   66 (68)
T 2k2m_A            8 LKWVLCNYDFQARNSSELSVKQRDVLEVLDDS-RKWWKVRDP-A---GQEGYVPYNILTPYPAA   66 (68)
T ss_dssp             CCEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECT-T---SCCEEEEGGGEEECCSC
T ss_pred             CEEEEECccCCCCCCCcccCCCCCEEEEEEcC-CCeEEEEeC-C---CCEEEEEhhhEEEcCCC
Confidence            56799999999999999999999999999986 899999853 2   34899999999997543

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.46  E-value=1.3e-13  Score=96.25  Aligned_cols=60  Identities=22%  Similarity=0.544  Sum_probs=53.6

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...+++|+|||.++.++||+|++||+|.|+++.+++||.|++.     |+.||||++||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~   65 (73)
T 2dbm_A            6 SGPCCRALYDFEPENEGELGFKEGDIITLTNQIDENWYEGMLH-----GHSGFFPINYVEILVAL   65 (73)
T ss_dssp             CCCEEEESSCBCCCSTTCCCBCTTCEEECCBCSSSSEEEEEET-----TEEEEEESSSEEESSCC
T ss_pred             CCCEEEEccccCCCCCCCccCCCCCEEEEEEecCCCEEEEEEC-----CCEEEechHHEEEccCC
Confidence            3567999999999999999999999999999999999999974     34899999999998653

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.3e-13  Score=99.15  Aligned_cols=60  Identities=28%  Similarity=0.468  Sum_probs=53.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc--CCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++  .+++||+|++.  |   +.|+||++||+++...+
T Consensus         8 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~--g---~~G~fP~~yv~~~~~~~   69 (85)
T 2dlp_A            8 SGYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEPGWQFGSAG--G---RSGLFPADIVQPAAAPD   69 (85)
T ss_dssp             CCEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCTTEEEEESS--S---CEEEEETTSEEECCCSC
T ss_pred             CEEEEECCCCCccCcCCccCcCCCEEEEEEccCCCCCeEEEEEC--C---EEEEechHHeEECCCcC
Confidence            5679999999999999999999999999997  89999999975  3   38999999999986543

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.7e-13  Score=97.14  Aligned_cols=60  Identities=32%  Similarity=0.774  Sum_probs=53.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+++||+|++.  |   +.||||++||+.+....
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~   66 (79)
T 2yun_A            7 GRLCKALYSFQARQDDELNLEKGDIVIIHEKKEEGWWFGSLN--G---KKGHFPAAYVEELPSNA   66 (79)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSCEEEESS--S---CEEEECSTTEEEESSCS
T ss_pred             CCEEEECccCCcCCCCCcCCCCCCEEEEEEcCCCCEEEEEEC--C---CEEEEEhHHeEECCCCC
Confidence            567999999999999999999999999999999999999954  3   48999999999987644

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.46  E-value=9.4e-14  Score=95.84  Aligned_cols=59  Identities=31%  Similarity=0.608  Sum_probs=53.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|+|+++.++||+|++||+|.|+++.+++||++++.     ++.||||++||+.+...
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~   66 (69)
T 2dil_A            8 AQEYRALYDYTAQNPDELDLSAGDILEVILEGEDGWWTVERN-----GQRGFVPGSYLEKLSGP   66 (69)
T ss_dssp             CCEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGCCBCCCS
T ss_pred             CcEEEECccCCccCcCccCCCCCCEEEEEECCCCCEEEEEEC-----CCEEEEehHHeEEcCCC
Confidence            456999999999999999999999999999999999999985     34899999999987654

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.46  E-value=4.4e-14  Score=97.23  Aligned_cols=59  Identities=31%  Similarity=0.709  Sum_probs=52.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|++.  |   +.|+||++||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            7 GRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN--G---KTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCCEEESSCBCCSSTTBCCBCTTCEECCCEEEETTEEEECST--T---CCEEEETTSEEECCSS
T ss_pred             CCEEEECccCCcCCCCCccCcCCCEEEEEEcCCCCeEEEEEC--C---cEEEEchHHEEECCCC
Confidence            456999999999999999999999999999988999999853  3   4899999999998654

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.46  E-value=1.5e-13  Score=91.37  Aligned_cols=55  Identities=27%  Similarity=0.622  Sum_probs=49.8

Q ss_pred             ceEEeccC-CCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         220 IATVLAPY-TATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       220 ~~~a~~dy-~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      .++|+||| .++.+++|+|++||+|.|+++.++|||.|++..+|   +.|+||++||++
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g---~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEPSGWSLGKLLDGS---KEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTSEEEEEESSCS---CEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCC---CEEEecHHHEEE
Confidence            38999999 89999999999999999999999999999987443   489999999975

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=9.5e-14  Score=97.71  Aligned_cols=61  Identities=26%  Similarity=0.613  Sum_probs=54.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||+|++.  |   +.||||++||+.+.....
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~~   70 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASSDWWRGEHN--G---MRGLIPHKYITLPAGTEK   70 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEETTEEEEEET--T---EEEEEESSSEECCSSCSC
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCCCEEEEEEC--C---cEEEEehHHEEEcCCCCC
Confidence            356999999999999999999999999999988999999984  3   489999999999876543

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.46  E-value=1.6e-13  Score=96.80  Aligned_cols=60  Identities=28%  Similarity=0.572  Sum_probs=53.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCC-CCCcee------eEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAK-GKKRQV------GWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~-g~~~~~------G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||+++.++||+|++||+|.|+++.+++||.|++..+ |   +.      ||||++||+++..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~g---~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDTSHEGWWLARHLEKKG---TGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEECCSSSEEEEEECSSCC---SSCCCCSEEEEETTTEEECCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEECCCCCeEEEEECCCCC---cCcccCCceEECHHHeeEcCC
Confidence            45799999999999999999999999999999999999998743 3   35      9999999998754

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=1.5e-13  Score=94.18  Aligned_cols=58  Identities=29%  Similarity=0.542  Sum_probs=49.6

Q ss_pred             CCceEEeccCCCCCCCc-eecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQ-LSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~e-Ls~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...++|+|||.++..++ |+|++||+|.|+.. .++|||.|++..+|   +.|+||++||+.+
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~~~gW~~g~~~~~g---~~G~fP~~yv~~l   66 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEARDGWHYGESEKTK---MRGWFPFSYTRVL   66 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSCBTTEEEEEETTTC---CEEEEEGGGEEEC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccCCCCCEEEEECCCC---CEEEEEHHHeEEC
Confidence            45699999999988777 99999999999964 67899999975444   4899999999986

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.46  E-value=1.5e-13  Score=97.72  Aligned_cols=59  Identities=32%  Similarity=0.651  Sum_probs=51.7

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC-----CeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-----GQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~-----g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..  .+++||.|++.     |+.||||.+||+.+...
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~   70 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKK--NTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEE--CSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEe--cCCCcEEEEECCCCCCCcEEEEchHHeEECCCC
Confidence            3579999999999999999999999999754  56899999985     49999999999987653

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.46  E-value=1.1e-13  Score=94.26  Aligned_cols=59  Identities=27%  Similarity=0.673  Sum_probs=51.1

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCC--CC-CceeeEecCCceEEe
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAK--GK-KRQVGWFPASYVKVM  278 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~--g~-~~~~G~fP~~~v~~~  278 (290)
                      +++|+|+|.++.+++|+|++||+|.|+++.+++||.|+...+  |+ .++.|+||++||+.+
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            3 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEEcccCCccCCCCCCCCCCCEEEEEEcCCCCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            589999999999999999999999999999999999998621  11 045899999999975

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.46  E-value=2.9e-14  Score=106.88  Aligned_cols=61  Identities=20%  Similarity=0.368  Sum_probs=54.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||.|++.  |+.|+.|+||++||+.+..
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~--g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A            5 SLYAIVLYDFKAEKADELTTYVGENLFICAHHNCEWFIAKPI--GRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CCCEEESSCCCCCSSSBCCCCSSEEECCCCEETTTEEEECCS--SSSCCCEEEESTTCBCCCS
T ss_pred             CeEEEECCCcCCCCCCcCCcCCCCEEEEeEecCCCEEEEEEC--CccCCeeEeecceEEEecC
Confidence            456999999999999999999999999999889999999986  4445579999999998754

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=1.4e-13  Score=97.29  Aligned_cols=62  Identities=19%  Similarity=0.466  Sum_probs=54.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCC-CCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~-~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      +..++|+|||.++.++||+|++||+|.|+++.+ ++||+|++..    |+.||||++||+.+....+
T Consensus        13 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~~----g~~G~~P~~yv~~~~~~~~   75 (78)
T 2dl5_A           13 PLTCKVVYSYKASQPDELTIEEHEVLEVIEDGDMEDWVKARNKV----GQVGYVPEKYLQFPTSSGP   75 (78)
T ss_dssp             SEEEEECSCBCCCSTTBCCBCSSEEEEEEECCSSSSEEEEECTT----CCEEEEETTTSCCSCCCCS
T ss_pred             CcEEEEceeECCCCCCCCCCCCCCEEEEEeccCCCCcEEEEeCC----CCEEEEEhHHEEECCCCCC
Confidence            456999999999999999999999999999975 8999999752    3489999999999876554

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=95.09  Aligned_cols=56  Identities=23%  Similarity=0.469  Sum_probs=50.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|||+|.++.++||+|++||+|.|+..   +++||.++. +|+.||||.+||+.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLED---GRQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEEC---SSSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEc---CCCEEEEEECCCCEEEEEHHHeEECCC
Confidence            469999999999999999999999999753   488999995 99999999999998764

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.46  E-value=9.5e-14  Score=95.81  Aligned_cols=60  Identities=33%  Similarity=0.682  Sum_probs=53.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|+|+++.++||+|++||+|.|+++.+++||+|++..    +..||||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~----~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            7 GRTVKALYDYKAKRSDELTFCRGALIHNVSKEPGGWWKGDYGT----RIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCEEEESSCBCCCSSSCCCBCTTCEEESCCCCSSSCEEEEETT----EEEEEECGGGEEECCSC
T ss_pred             CcEEEECeeECCCCcCccCCCCCCEEEEEEcCCCCeEEEEECC----CCEEEEchHHcEECccC
Confidence            4569999999999999999999999999999899999999762    23599999999998654

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.45  E-value=1.9e-13  Score=97.72  Aligned_cols=59  Identities=25%  Similarity=0.650  Sum_probs=53.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|++..++|||.|+..     |+.||||++||+.+...
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~-----g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           17 KELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN-----DRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEECCTT
T ss_pred             ceEEEEccccCCCCCCccccCCCCEEEEEEecCCCEEEEEEC-----CeEEEEEHHHEEECCCC
Confidence            456999999999999999999999999999989999999764     34899999999998654

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.45  E-value=9.6e-14  Score=96.62  Aligned_cols=56  Identities=32%  Similarity=0.708  Sum_probs=50.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee---CCee---eeccCCcccCCc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQT---GWFPESYVEPCD   96 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~---G~~P~~yv~~~~   96 (290)
                      ...++|||+|.++.++||+|++||+|.| ..  .+++||.|++   +|+.   ||||.+||+.+.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~--~~~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-AR--KEEQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EE--ECSSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-ee--CCCCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            4689999999999999999999999999 65  4789999998   7999   999999998653

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.45  E-value=1.9e-13  Score=97.99  Aligned_cols=61  Identities=26%  Similarity=0.498  Sum_probs=54.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.+++|+|++||+|.|+++.+.+||.|+...+|   +.|+||++||+.+...
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~~~~~   66 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGPGDWWEARSLTTG---ETGYIPSNYVAPVDSI   66 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCSSSEEEEEETTTC---CEEEEEGGGEEETTTC
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecCCCeEEEEECCCC---CEEEEehHHeEECCCc
Confidence            467999999999999999999999999999999999999985333   4899999999998654

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.1e-13  Score=96.63  Aligned_cols=60  Identities=20%  Similarity=0.633  Sum_probs=53.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++ +++||+|++..+|   +.||||++||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~gW~~g~~~~~g---~~G~fP~~yv~~~~~~   76 (79)
T 1x6b_A           17 LPQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDGWLYGERLRDG---ETGWFPEDFARFISGP   76 (79)
T ss_dssp             CCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETTEEEEEETTTC---CEEEECGGGCEEEESS
T ss_pred             CCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCCEEEEEECCCC---CEEEEchHHEEECCCC
Confidence            4569999999999999999999999999999 9999999985333   4899999999998653

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.45  E-value=6.3e-14  Score=98.89  Aligned_cols=72  Identities=24%  Similarity=0.539  Sum_probs=61.3

Q ss_pred             CCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCccC
Q psy7076         114 STEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVS  192 (290)
Q Consensus       114 ~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (290)
                      ++..+||+|++||+|.|+.. +++||.++.+|+.||||.+||+.+....                               
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~-------------------------------   50 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLDSGT-------------------------------   50 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSSCCCEEETTEEECCCGGGEEECCCSS-------------------------------
T ss_pred             CcCCCccCCCCCCEEEEEEecCCCEEEEEECCcEEEEEeeEEEEcCCCC-------------------------------
Confidence            45678999999999999988 6889999999999999999999875211                               


Q ss_pred             CCCCCCCCCCCCcccccCCCCCCCCCCceEEeccCCCCCCCceecCCC
Q psy7076         193 GGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRG  240 (290)
Q Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~dy~~~~~~eLs~~~G  240 (290)
                                              ....++|+|||+++..+||+|..-
T Consensus        51 ------------------------~~~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A           51 ------------------------GKELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             ------------------------CCCEEEESSCCCCSSCCCCCSCCC
T ss_pred             ------------------------CCceEEECCCcCCCCCCccccCCC
Confidence                                    023589999999999999999863

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=2.2e-13  Score=97.93  Aligned_cols=58  Identities=21%  Similarity=0.393  Sum_probs=51.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCD   96 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~   96 (290)
                      ....++|||+|.++..+||+|++||+|.|+..  .+++||.|+ .+|+.||||.+||+.+.
T Consensus        18 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~g~~G~~P~~yv~~~~   76 (85)
T 2yuq_A           18 EETVVIALYDYQTNDPQELALRRNEEYCLLDS--SEIHWWRVQDRNGHEGYVPSSYLVEKS   76 (85)
T ss_dssp             SSCEEEESSCCCCSCSSBCCCCBTEEEEEEEC--CSSSEEEEECSSSCEEEEETTTCEECC
T ss_pred             CCeEEEECcCCCCCCCCcCCCCCCCEEEEEEe--cCCCeEEEEECCCCEEEEehHHeEEcc
Confidence            34679999999999999999999999999754  567899997 49999999999999864

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.45  E-value=1e-13  Score=101.26  Aligned_cols=63  Identities=27%  Similarity=0.611  Sum_probs=53.6

Q ss_pred             CCccEEEEeccccCCCCC-CCccCCCCEEEEccccCC---CCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSRNGD-ELSFQPGDIIMVPVKQNA---EPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~-eLs~~~Gd~v~v~~~~~~---~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      .....++|+|+|.++..+ ||+|++||+|.|+.....   +++||.|++ +|+.||||.+||+.+...
T Consensus        12 ~~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           12 SKLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             TTCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC
T ss_pred             CcCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCC
Confidence            345789999999999999 999999999999754221   138999998 899999999999988654

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.45  E-value=8.1e-14  Score=96.19  Aligned_cols=59  Identities=31%  Similarity=0.679  Sum_probs=52.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ...++|+|||.++.++||+|++||+|.|+++ +++||+|++.  |   +.||||++||+.+...+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~   66 (69)
T 1uhf_A            8 GEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSIG--D---RSGIFPSNYVKPKDSGP   66 (69)
T ss_dssp             SEEEECSSCBCCSSSSBCCBCTTCEEEECEE-ETTEEEECST--T---CCEEECGGGCEECCCCC
T ss_pred             CCEEEEeeeECCCCcCccCCCCCCEEEEEEe-CCCEEEEEeC--C---cEEEEchHHeEECCCCC
Confidence            4569999999999999999999999999998 7899999854  3   48999999999986544

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.45  E-value=2.8e-14  Score=103.79  Aligned_cols=61  Identities=34%  Similarity=0.631  Sum_probs=50.9

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccc-----------c--CCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK-----------Q--NAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~-----------~--~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ...+|+|||+|.++.++||+|++||+|.|+..           .  ..+.+||.|++  +|++||||.|||+.+..
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEE
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEecc
Confidence            45689999999999999999999999999732           1  12338999987  69999999999997653

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.45  E-value=1.4e-13  Score=94.23  Aligned_cols=59  Identities=19%  Similarity=0.410  Sum_probs=49.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++ +++||.|+.. +   |+.|+||++||+.+...
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~-~~~Ww~~~~~-~---g~~G~~Psnyv~~~~~~   62 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNA-A---NRTGYVPSNYVERKLEH   62 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEEC-SSSSCEEECT-T---SCEEECCCCSEEEC---
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEec-CCCeEEEEeC-C---CCEEEeChHHEeEcCCC
Confidence            4569999999999999999999999999999 4799999954 2   34899999999986543

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.45  E-value=9.7e-14  Score=99.58  Aligned_cols=59  Identities=25%  Similarity=0.563  Sum_probs=53.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|+|+|.++..++|+|.+||+|.|+..  .+++||.|+.  +|+.||||.+||+.+...
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~--~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   66 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEF--GPGDWWEARSLTTGETGYIPSNYVAPVDSI   66 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEEC--CSSSEEEEEETTTCCEEEEEGGGEEETTTC
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEe--cCCCeEEEEECCCCCEEEEehHHeEECCCc
Confidence            4679999999999999999999999999753  5688999998  999999999999987654

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.1e-13  Score=98.31  Aligned_cols=60  Identities=35%  Similarity=0.668  Sum_probs=52.6

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCC--CCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~--~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...+++|+|||.++.++||+|++||+|.|+++.+  ++||+|++.     |+.||||++||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~~   77 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDSHFDWWEGKLR-----GQTGIFPANYVTMNSGP   77 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSCSSSEEEEEET-----TEEEEEEGGGCCBCCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCCCCCeEEEEEC-----CEEEEEchhHeEEcCCC
Confidence            3566999999999999999999999999999875  899999984     34899999999987543

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=95.81  Aligned_cols=55  Identities=22%  Similarity=0.650  Sum_probs=50.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ...++|+|||.++.++||+|++||+|.|++..++|||+|++.  |   ..||||++||++
T Consensus        17 ~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~gWw~g~~~--g---~~G~fP~~yV~~   71 (72)
T 2l0a_A           17 ARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDPNWWKGETH--Q---GIGLFPSNFVTA   71 (72)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEETTEEEEECS--S---CEEECTTCCEEE
T ss_pred             CeEEEECCccCCCCCCccCCCCCCEEEEEEecCCCEEEEEEC--C---CEEEechhhCcc
Confidence            456999999999999999999999999999988999999975  2   389999999985

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.8e-13  Score=99.08  Aligned_cols=60  Identities=37%  Similarity=0.741  Sum_probs=53.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ...++|+|||+++.++||+|++||+|.|+++.+++||++++.     ++.||||++||+.+....
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~gWw~g~~~-----g~~G~~P~~yv~~~~~~~   76 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSDGWWRGSYN-----GQVGWFPSNYVTEEGDSP   76 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTTSEEEEEET-----TEEEEEEGGGEEECCCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCCCeEEEEEC-----CcEEEEehHHEEECCCcc
Confidence            456999999999999999999999999999999999999984     348999999999986544

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.45  E-value=1.3e-13  Score=92.36  Aligned_cols=57  Identities=19%  Similarity=0.425  Sum_probs=50.6

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      .+++|+|||.++.++||+|++||+|.|++. +++||.++...    |+.||||++||+.+..
T Consensus         2 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~----g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            2 KYAKSKYDFVARNSSELSVMKDDVLEILDD-RRQWWKVRNAS----GDSGFVPNNILDIMRT   58 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG-GCCEEEEECTT----SCEEEEEGGGEEEECC
T ss_pred             eEEEECccCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEECC----CCEEEEEHHHeEEccC
Confidence            468999999999999999999999999999 89999998542    3589999999999754

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=2.5e-13  Score=100.12  Aligned_cols=63  Identities=22%  Similarity=0.441  Sum_probs=54.2

Q ss_pred             CCceEEeccCCCC--------CCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEecCCCccc
Q psy7076         218 PEIATVLAPYTAT--------SSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISI  285 (290)
Q Consensus       218 ~~~~~a~~dy~~~--------~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~~  285 (290)
                      ..+++|+|||.++        ..+||+|++||+|.|+.+ .++|||+|++.     |+.||||++||+.+......+
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~~~gWw~g~~~-----g~~G~~P~~yv~~~~~~~~~~   88 (97)
T 2csq_A           17 ARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADGFYRGETC-----ARLGLIPCNMVSEIQADDEEM   88 (97)
T ss_dssp             CEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEECTTCEEEEEET-----TEEEEEETTTSEECCCCSCCC
T ss_pred             ceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecCCCCeEEEEEC-----CcEEEEehHHeEECCCCchhh
Confidence            5578999999999        799999999999999965 56789999984     348999999999997765554

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.44  E-value=1.9e-13  Score=92.52  Aligned_cols=61  Identities=25%  Similarity=0.501  Sum_probs=51.9

Q ss_pred             CCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccCCCccceEEEEcccCCCC
Q psy7076          51 NGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETGEVVPEYYIAAYPYDST  115 (290)
Q Consensus        51 ~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~~~~~~~~~~a~~~y~~~  115 (290)
                      .++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||+.+....  ....++|+|||+++
T Consensus         2 ~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~--~~~~~~alydy~a~   62 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFVPAAYVKKLDSGT--GKELVLALYDYQEK   62 (63)
T ss_dssp             CCCCCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEECSCST--TSCEEEECSCBCC-
T ss_pred             CccccCCCCCCEEEEEEe--cCCCEEEEEECCcEEEEeHHHEEEcCCCC--CCccEEEeccccCC
Confidence            478999999999999754  56889999999999999999999886543  35789999999985

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=95.99  Aligned_cols=61  Identities=31%  Similarity=0.668  Sum_probs=54.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+++||+|++.  |   +.||||++||+.+....+
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~~   68 (71)
T 2dnu_A            8 EEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEGWWYIRYL--G---KEGWAPASYLKKAKDSGP   68 (71)
T ss_dssp             SEEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSSEEEEEET--T---EEEEEEGGGCEECCCCCS
T ss_pred             CCEEEECCccCCCCCCCCcCCCCCEEEEeECCCCCeEEEEEC--C---cEEEEEHHHeEEccCCCC
Confidence            456999999999999999999999999999988999999987  3   489999999999876543

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.44  E-value=2.7e-13  Score=91.67  Aligned_cols=57  Identities=21%  Similarity=0.565  Sum_probs=50.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++ .+.+||.+++.  |   +.||||++||+++.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~~~~~--g---~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--N---GQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECTTSSEEEEEET--T---EEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCCCCCeEEEEEC--C---CeEEEehHHeEECC
Confidence            5679999999999999999999999999995 45679999984  3   48999999999864

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.44  E-value=1.4e-13  Score=91.49  Aligned_cols=55  Identities=20%  Similarity=0.517  Sum_probs=48.7

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCC-CCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~-~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      .++|+|+|.++.++||+|++||+|.|+++.+ +|||.|++..+   |+.|+||++||+.
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~~~---g~~G~~P~~yv~~   58 (58)
T 1zuu_A            3 ENKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTT---GETGLVPTTYIRI   58 (58)
T ss_dssp             CCEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTT---TEEEEEEGGGEEC
T ss_pred             EEEEeeeECCcCCCcccCCCCCEEEEeEcCCCCCCEEEEECCC---CCEEEEEHHHEEC
Confidence            3899999999999999999999999999986 79999998533   3589999999973

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=4.2e-13  Score=95.55  Aligned_cols=57  Identities=18%  Similarity=0.317  Sum_probs=49.8

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCD   96 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~   96 (290)
                      ..|+|||+|.++.++||+|++||+|.|+.. ..+++||.+++  +|+.||||.+||+...
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~-~~~~~Ww~g~~~~~g~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           18 TQCITKCEHTRPKPGELAFRKGDVVTILEA-CENKSWYRVKHHTSGQEGLLAAGALRERS   76 (81)
T ss_dssp             CEEEESSCBSSCCTTCCCBCTTCEEEEEEC-CCSSSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECCCCCcCCCCCCCCCCCCEEEEEec-cCCCCeEEEEeCCCCCEEEEehHHEEEcc
Confidence            579999999999999999999999999753 23348999986  7999999999998654

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.44  E-value=3.4e-13  Score=94.32  Aligned_cols=59  Identities=36%  Similarity=0.779  Sum_probs=52.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+++ +++||+|++.  |   +.||||++||+.+....
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~--g---~~G~~P~~yv~~~~~~~   68 (74)
T 1j3t_A           10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--G---GRGWFPKSYVKIIPGSE   68 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEEST--T---CCCEEEGGGEEECCCST
T ss_pred             CeEEEECCCCCCCCCCccCCCCCCEEEEEec-CCCEEEEEEC--C---cEEEEchHHeEECCCCC
Confidence            4669999999999999999999999999999 4799999974  3   38999999999986544

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.44  E-value=5.3e-13  Score=100.56  Aligned_cols=60  Identities=27%  Similarity=0.643  Sum_probs=53.2

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ....+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.  +|+.||||.+||+.+..
T Consensus        25 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~g~~G~~P~~yv~~~~~   86 (109)
T 2yt6_A           25 GGVTIFVALYDYEARTTEDLSFKKGERFQIINN--TEGDWWEARSIATGKSGYIPSNYVVPADS   86 (109)
T ss_dssp             SSCCEEEESSCCCCSSTTSCCCCTTCEEEEEEC--SCTTCEEEEESSSCCEEEECTTTEEESSS
T ss_pred             CCCEEEEECccCCCCCCCccCCCCCCEEEEEEc--cCCCcEEEEECCCCCEEEechHHcEECCc
Confidence            345789999999999999999999999999754  5789999996  99999999999998754

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=2.2e-13  Score=96.58  Aligned_cols=57  Identities=18%  Similarity=0.286  Sum_probs=50.7

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ...++|||+|.++..+||+|++||+|.|+.   .+.+||.+++  +|+.||||.+||+.+..
T Consensus        17 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~---~~~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           17 SDFLAVLSDYPSPDISPPIFRRGEKLRVIS---DEGGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CCEEEESSCSSCTTTSCCSSCTTCEEEEEE---EETTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CeEEEEccCCCCCCCCcCCCCCCCEEEEEe---cCCCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            457999999999999999999999999974   2578999997  59999999999987754

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.44  E-value=1.5e-13  Score=100.59  Aligned_cols=62  Identities=35%  Similarity=0.673  Sum_probs=52.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccC--CCCCeEEEeeCCe-eeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN--AEPGWLAGELRGQ-TGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~--~~~~W~~g~~~g~-~G~~P~~yv~~~~~~   98 (290)
                      ...+++|||+|.++.++||+|++||+|.|+....  .+.+||.|++.|+ .||||.+||+.+...
T Consensus        16 ~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~   80 (93)
T 1wxu_A           16 DHVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKR   80 (93)
T ss_dssp             CBBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCB
T ss_pred             CCEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCc
Confidence            3467999999999999999999999999975421  1169999999777 999999999987653

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.44  E-value=3.9e-13  Score=96.83  Aligned_cols=55  Identities=20%  Similarity=0.376  Sum_probs=49.2

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP   94 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~   94 (290)
                      ....++|||+|.++..+||+|++||+|.|+..   +++||.|+. +|+.||||.+||+.
T Consensus        30 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           30 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDD---SKTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CCEEEEESSCCCCCSSSBCCCCTTEEEEEEEC---CSSEEEEECTTSCEEEEEGGGBCC
T ss_pred             CceEEEECccCCCCCCCEeccCCCCEEEEEec---CCCeEEEEECCCCEEEeehHHEEe
Confidence            34679999999999999999999999999753   579999995 99999999999974

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.44  E-value=2.6e-13  Score=94.38  Aligned_cols=60  Identities=15%  Similarity=0.434  Sum_probs=52.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+++ +++||.|+.. .   |+.||||++||+.+....
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~---g~~G~~P~~yv~~~~~~~   66 (72)
T 2jw4_A            7 EVVVVAKFDYVAQQEQELDIKKNERLWLLDD-SKSWWRVRNS-M---NKTGFVPSNYVERKNSAR   66 (72)
T ss_dssp             CEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-SSSSEEEECT-T---SCEEEECTTSCEECCCCC
T ss_pred             CeEEEECcCCCcCCCCcccCCCCCEEEEEEC-CCCEEEEEEC-C---CCEEEEEhhHEEEcCCCc
Confidence            4579999999999999999999999999997 6799999954 2   348999999999986543

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.44  E-value=3.7e-13  Score=90.81  Aligned_cols=40  Identities=23%  Similarity=0.640  Sum_probs=37.8

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEE
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGEL  258 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~  258 (290)
                      .+++|+|||.++.++||+|++||+|.|+++.+.+||.|++
T Consensus        22 ~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~   61 (62)
T 1g2b_A           22 ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV   61 (62)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEE
T ss_pred             eEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEe
Confidence            4599999999999999999999999999999999999986

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=3.6e-13  Score=98.70  Aligned_cols=62  Identities=27%  Similarity=0.541  Sum_probs=53.2

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEc--CC--CCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKK--TT--TGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~--~~--~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...+++|+|+|.++.++||+|++||+|.|+++  .+  +|||+|+...+|   +.|+||++||+.+...
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g---~~G~fP~~yv~~~~~~   80 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTG---CSGLLPENYITKADEC   80 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSC---CEEEEEGGGEEECCSC
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCC---CEEEechHHeEEcccC
Confidence            35679999999999999999999999999998  44  899999964333   4899999999998644

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.44  E-value=1.3e-13  Score=97.15  Aligned_cols=58  Identities=26%  Similarity=0.585  Sum_probs=51.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC---Cee------eeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR---GQT------GWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~---g~~------G~~P~~yv~~~~~   97 (290)
                      ...++|||+|.++.++||+|++||+|.|+..  .+++||.|++.   |+.      ||||.+||+.+..
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~   73 (77)
T 2d8j_A            7 GQYFVALFDYQARTAEDLSFRAGDKLQVLDT--SHEGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSG   73 (77)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCCEEEEEC--CSSSEEEEEECSSCCSSCCCCSEEEEETTTEEECCC
T ss_pred             CCEEEEccCCCCCCCCccCCCCCCEEEEEEC--CCCCeEEEEECCCCCcCcccCCceEECHHHeeEcCC
Confidence            3589999999999999999999999999754  57899999985   998      9999999998754

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.44  E-value=4.8e-13  Score=97.43  Aligned_cols=61  Identities=26%  Similarity=0.636  Sum_probs=53.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc--CCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK--TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~--~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|||+++.++||+|++||+|.|+++  .+.+||+|+.. .   ++.||||++||+.+....
T Consensus        17 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~~~~~   79 (91)
T 1wx6_A           17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-R---GQVGLVPKNYVVVLSDGP   79 (91)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSSCTTEEEEECT-T---CCEEEEEGGGEEEEEESS
T ss_pred             cEEEEEeecCCcCCCCcccCCCCCEEEEEECCCCCCCcEEEEeC-C---CCEEEEchHHEEECCCcC
Confidence            4569999999999999999999999999999  68899999842 2   348999999999986544

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=1.3e-13  Score=101.46  Aligned_cols=64  Identities=22%  Similarity=0.476  Sum_probs=54.5

Q ss_pred             CCceEEeccCCCCC------CCceecCCCCEEEEE-EcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCccc
Q psy7076         218 PEIATVLAPYTATS------SEQLSLSRGQLIMIR-KKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGISI  285 (290)
Q Consensus       218 ~~~~~a~~dy~~~~------~~eLs~~~Gd~i~v~-~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~~  285 (290)
                      ..+++|+|||.++.      ++||+|++||+|.|+ ++.++|||+|++. .|   +.||||++||+.+......+
T Consensus        17 ~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~-~g---~~G~~Psnyv~~~~~~~~~~   87 (96)
T 1wie_A           17 VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DG---QRGLVPSNFVDFVQDNESRL   87 (96)
T ss_dssp             EEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET-TC---CBCBCCTTSEECCCSCCCCS
T ss_pred             CcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCCEEEEEEC-CC---CEEEEchHHEEEcCCCCccc
Confidence            45699999999988      999999999999999 7789999999973 13   48999999999987654443

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.43  E-value=1.5e-13  Score=94.63  Aligned_cols=57  Identities=23%  Similarity=0.647  Sum_probs=48.9

Q ss_pred             CCceEEeccCCCCCCC-ceecCCCCEEEEEEcCC-----CCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSE-QLSLSRGQLIMIRKKTT-----TGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~-eLs~~~Gd~i~v~~~~~-----~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|+|.++.++ ||+|++||+|.|+++.+     ++||.|++..    |+.|+||++||+.+
T Consensus         7 ~~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~----G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            7 HHFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKN----GNIGYIPYNYIEII   69 (69)
T ss_dssp             --CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETT----TEEEEECGGGEEEC
T ss_pred             eeEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCC----CCEEEecHHHEEEC
Confidence            3569999999999999 99999999999999875     4999999741    45899999999874

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=2.5e-13  Score=93.45  Aligned_cols=59  Identities=19%  Similarity=0.465  Sum_probs=51.3

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...+++|+|||.++.++||+|++||+|.|+++. ++||.++.. +   ++.||||++||+.+..
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~---g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            6 SGKYVKILYDFTARNANELSVLKDEVLEVLEDG-RQWWKLRSR-S---GQAGYVPCNILGEASG   64 (68)
T ss_dssp             SCCCEECSSCBCCSSSSBCCBCTTCEEEEEECS-SSEEEEECT-T---SCEEEEETTTCCBCCC
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEcC-CCEEEEEEC-C---CCEEEEEHHHeEECCC
Confidence            356799999999999999999999999999985 899999853 2   3489999999998764

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.43  E-value=2.2e-13  Score=99.64  Aligned_cols=59  Identities=32%  Similarity=0.711  Sum_probs=52.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||+++..+||+|++||+|.|+++.  ++|||+|++.     |+.||||++||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~gWw~g~~~-----g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ-----GNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEET-----TEEEEEETTTEEECCSS
T ss_pred             CEEEEECccCCCCCCCCcCCCCCCEEEEeEccCCCCCEEEEEEC-----CCEEEechHHeEEcCCc
Confidence            45699999999999999999999999999986  7899999975     34899999999998654

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=5.9e-13  Score=94.80  Aligned_cols=59  Identities=15%  Similarity=0.306  Sum_probs=51.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCC-CeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT-GWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~-gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...++|+|||+++.++||+|++||+|.|+++.++ +||.+++..+|   +.|+||++||+...
T Consensus        17 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~~~   76 (81)
T 1x6g_A           17 GTQCITKCEHTRPKPGELAFRKGDVVTILEACENKSWYRVKHHTSG---QEGLLAAGALRERS   76 (81)
T ss_dssp             TCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCSSSEEEEEETTTC---CEEEEEGGGEEECC
T ss_pred             CCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCCCCeEEEEeCCCC---CEEEEehHHEEEcc
Confidence            4569999999999999999999999999998766 99999975333   48999999999754

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.6e-13  Score=94.72  Aligned_cols=58  Identities=33%  Similarity=0.729  Sum_probs=51.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.  +.+||+|++.     ++.||||++||+++..
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            7 GGTAVARYNFAARDMRELSLREGDVVRIYSRIGGDQGWWKGETN-----GRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSSSSSCEEEEET-----TEEEEECSSSEEECCC
T ss_pred             CCEEEECccCCcCCCCcCCCCCCCEEEEEEecCCCCCeEEEEEC-----CeEEEeehHHEEEcCC
Confidence            56799999999999999999999999999987  4599999974     3489999999999754

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.42  E-value=3.6e-13  Score=92.59  Aligned_cols=59  Identities=17%  Similarity=0.435  Sum_probs=51.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++. ++||.++.. +   ++.||||++||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~~~~~-~---g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS-KRWWLVKNE-A---GRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS-SSEEEEECT-T---SCEEEEEGGGEECCCCS
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC-CCEEEEEEC-C---CCEEEEEhHHcEECCCC
Confidence            45699999999999999999999999999994 899999952 2   34899999999997654

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.42  E-value=2.7e-13  Score=94.30  Aligned_cols=59  Identities=19%  Similarity=0.413  Sum_probs=51.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCcee---eEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQV---GWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~---G~fP~~~v~~~~  279 (290)
                      ..+++|+|||.++.++||+|++||+|.| ++.++|||.|++..+  .|+.   ||||++||+++.
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~Ww~g~~~~~--~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A           10 GPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQWWWATLLDE--AGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCEEECCTTCBCSSTTSCBCCTTCCEEE-EEECSSCEEEEEECT--TSCEEEEEEECTTTSEEEC
T ss_pred             CcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCCEEEEEEcCC--CCCEeCCcEEcHhHEEEcc
Confidence            4579999999999999999999999999 888899999998532  0237   999999999864

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.42  E-value=2e-13  Score=89.46  Aligned_cols=52  Identities=31%  Similarity=0.651  Sum_probs=46.9

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCC-CCeEEEEEcCCCCCceeeEecCCceE
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVGWFPASYVK  276 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~-~gW~~g~~~~~g~~~~~G~fP~~~v~  276 (290)
                      .++|+|+|+++.++||+|++||+|.|+++.+ ++||.|++.  |   +.|+||++||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~--g---~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDDGSGWTYGECD--G---LKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCCSSSEEEEEET--T---EEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecCCCCEEEEEEC--C---eEEEeeHHHcC
Confidence            3789999999999999999999999999985 799999984  3   48999999984

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1.1e-13  Score=95.85  Aligned_cols=56  Identities=30%  Similarity=0.599  Sum_probs=49.0

Q ss_pred             cEEEEeccccCCCCC--CCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGD--ELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~--eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      .+++|+|+|.++..+  ||+|++||+|.|+..   +++||.|+. +|+.||||.+||+.+..
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~---~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI---EGRWWKARRANGETGIIPSNYVQLIDG   64 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT---TSSEEEEECTTSCEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc---CCCeEEEEECCCCEEEEehHHEEECCC
Confidence            579999999998765  999999999999642   689999974 99999999999997754

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.42  E-value=2e-13  Score=91.43  Aligned_cols=56  Identities=27%  Similarity=0.553  Sum_probs=48.2

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCC-CCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~-~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..++|+|||.++.++||+|++||+|.|+++.+ ++||.|++. +   |+.|+||++||+++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~-~---g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            4 VRVRALYDYDGQEQDELSFKAGDELTKLGEEDEQGWCRGRLD-S---GQLGLYPANYVEAI   60 (60)
T ss_dssp             CEEEECSCBCCSSSSBCCBCTTCEEEECSCCCSSSEEEEECS-S---CCEEEEEGGGEEC-
T ss_pred             CEEEECcccCccCCCcccCCCCCEEEEEEccCCCCceEEEeC-C---CCEEEecHHHEEEC
Confidence            45899999999999999999999999999854 599999965 2   34899999999864

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.41  E-value=3.2e-14  Score=98.80  Aligned_cols=58  Identities=33%  Similarity=0.680  Sum_probs=51.8

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeee-eccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTG-WFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G-~~P~~yv~~~~~~   98 (290)
                      .+++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.| |||.+||+.+...
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~gG~~P~~yv~~~~~~   65 (71)
T 1hsq_A            7 CAVKALFDYKAQREDELTFIKSAIIQNVEK--QEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SCCCCSSCCCCSSSSSCCCCTTCCCBSCCC--BTTTEECCBCSSSCSCCEETTTCCSCSCC
T ss_pred             eEEEECCCCCcCCCCccCCCCCCEEEEEEe--cCCCEEEEEECCeEEeEEChHHcEECCCc
Confidence            578999999999999999999999999743  578999999988887 9999999988654

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.41  E-value=4e-13  Score=90.60  Aligned_cols=60  Identities=23%  Similarity=0.629  Sum_probs=52.7

Q ss_pred             CeeeeccCCcccCCccCCCccceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeC
Q psy7076          82 GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIG  143 (290)
Q Consensus        82 g~~G~~P~~yv~~~~~~~~~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~  143 (290)
                      |+.||||.+||++.....  ....++|+|+|.++..+||+|++||+|.|+++ +++||.++++
T Consensus         2 g~~G~~P~~yv~~~~~~~--~~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~n   62 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDSGT--GKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN   62 (62)
T ss_dssp             CEEEEEEGGGEEECCCCS--SSCEEEECSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEEEC
T ss_pred             CCccccccceEeecCCCC--CceEEEEeeeECCCCCCccCCCCCCEEEEEEecCCCEEEEEeC
Confidence            789999999999775533  45789999999999999999999999999998 6889999863

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.41  E-value=4.1e-13  Score=92.57  Aligned_cols=58  Identities=34%  Similarity=0.623  Sum_probs=51.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...++|+|||.++.+++|+|++||+|.|+++.+.+||.|++. +   |+.|+||++||+++.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            6 APTVVALYDYTANRSDELTIHRGDIIRVFFKDNEDWWYGSIG-K---GQEGYFPANHVASET   63 (69)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSSEEEEEEE-T---TEEEEEEGGGEEEHH
T ss_pred             cCEEEECccCCCCCcCcCCCCCCCEEEEEEecCCCeEEEEeC-C---CCEEEEchHHeEECc
Confidence            346999999999999999999999999999999999999872 2   358999999999864

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.41  E-value=8.5e-13  Score=100.86  Aligned_cols=56  Identities=30%  Similarity=0.523  Sum_probs=50.6

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCcccCCc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCD   96 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~~~~   96 (290)
                      ...++|||+|.++..+||+|++||+|.|+..   +++||+|++   +|+.||||.+||+.+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~---~~gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQET---CGDWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEE---ETTEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEc---CCCEEEEEECCCCCCEEEeChhHEEEec
Confidence            4679999999999999999999999999854   259999999   8999999999998764

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.41  E-value=1.8e-12  Score=93.37  Aligned_cols=59  Identities=25%  Similarity=0.563  Sum_probs=52.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++. ++||+|++...|   +.||||++||+.+.+
T Consensus        25 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~Ww~g~~~~~g---~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           25 DIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-GEWWKARSLATR---KEGYIPSNYVARVDS   83 (86)
T ss_dssp             SEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-SSEEEEEETTTC---CEEEEEGGGEEEGGG
T ss_pred             CcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-CCeEEEEECCCC---CEEEEehHHcEEccc
Confidence            46799999999999999999999999999998 699999984333   489999999999743

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.41  E-value=1.7e-13  Score=104.04  Aligned_cols=59  Identities=27%  Similarity=0.538  Sum_probs=51.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccc---cCCCCCeEEEee----------CCeeeeccCCcccCC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVK---QNAEPGWLAGEL----------RGQTGWFPESYVEPC   95 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~---~~~~~~W~~g~~----------~g~~G~~P~~yv~~~   95 (290)
                      ...+++|||+|.++..+||+|++||+|.|+..   ...+++||.|++          +|+.||||.+||+.+
T Consensus        43 ~~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           43 FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             cceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            45689999999999999999999999999751   146789999976          389999999999865

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.41  E-value=3.6e-13  Score=103.11  Aligned_cols=64  Identities=22%  Similarity=0.353  Sum_probs=55.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.++|||.|++..  +.|+.|+||++||+.+....+
T Consensus         3 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~Ww~g~~~~--~~g~~G~~P~nyv~~~~~~~~   66 (120)
T 2kym_A            3 PLFAVTLYEFKAERDDELDVSPGENLSICAHYDYEWFIAKPIN--RLGGPGLVPVSYVRIIDLMDP   66 (120)
T ss_dssp             CCEEEECSCBCCCSTTCCCBCTTCEEEEEEEETTTEEEEEESS--SCSCCCCEEGGGEEEECSSCT
T ss_pred             CEEEEEcccCCCCCCCccCCCCCCEEEEEEecCCCEEEEEECC--CCCCEEEEchHHEEEccCCCC
Confidence            3569999999999999999999999999999999999999742  234589999999999865443

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.41  E-value=1.1e-13  Score=100.89  Aligned_cols=61  Identities=28%  Similarity=0.634  Sum_probs=54.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.++|||.|++.     |+.|+||++||+.+...+.
T Consensus        18 ~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~gWw~g~~~-----g~~G~fPsnyV~~~~~~~~   78 (92)
T 2o2o_A           18 RRRCQVAFSYLPQNDDELELKVGDIIEVVGEVEEGWWEGVLN-----GKTGMFPSNFIKELSGESD   78 (92)
T ss_dssp             SCEEEECSCBCCCSSSCCCBCSSCEEECCCGGGSSCBCCEET-----TEECCBCSSSEECCSSCSS
T ss_pred             CeEEEEccccCCCCCccccccCCCEEEEeEecCCCEEEEEEC-----CeEEEeehHHEEECCCCCc
Confidence            457999999999999999999999999999989999999974     3489999999999876543

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.5e-13  Score=95.51  Aligned_cols=59  Identities=22%  Similarity=0.468  Sum_probs=51.5

Q ss_pred             CCceEEeccCCCCC-------CCceecCCCCEEEEEEcCC-CCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATS-------SEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~-------~~eLs~~~Gd~i~v~~~~~-~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|+|+|.++.       .+||+|++||+|.|+++.+ +|||.|++.     ++.||||++||+.+...
T Consensus         7 ~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~-----g~~G~~P~~yv~~~~~~   73 (76)
T 2csi_A            7 GRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDEDGFYYGELN-----GQKGLVPSNFLEEVSGP   73 (76)
T ss_dssp             SEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCSSSEEEEEET-----TEEEEEEGGGCCBCCCC
T ss_pred             ccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCCCCeEEEEEC-----CcEEEEehHHEEECCCC
Confidence            45699999999998       9999999999999999866 489999974     34899999999987643

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.40  E-value=4.4e-13  Score=97.05  Aligned_cols=56  Identities=34%  Similarity=0.715  Sum_probs=49.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC-----CCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-----TTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-----~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.     ++|||+|++. .   |+.||||++||++
T Consensus        29 ~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~-~---g~~G~fP~nyV~p   89 (89)
T 2rf0_A           29 GPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLP-S---GRVGVFPSNYVAP   89 (89)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECT-T---CCEEEEEGGGEEC
T ss_pred             CcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEEC-C---CCEEEEcHHHCcC
Confidence            56799999999999999999999999999985     8999999973 1   3489999999974

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.40  E-value=8e-14  Score=98.35  Aligned_cols=57  Identities=21%  Similarity=0.360  Sum_probs=50.4

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPC   95 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   95 (290)
                      ....++|||+|.++..+||+|++||+|.|+..  .+++||.|+. +|+.||||.+||+..
T Consensus        19 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           19 EETLVIALYDYQTNDPQELALRCDEEYYLLDS--SEIHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SSSCCCCCCCBCCCCTTSCCBCSSSCCSCCCT--TSSSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             CceEEEECccCCCCCcCCcCCCCCCEEEEEEe--cCCCCEEEEECCCCEEEEehHHEEEc
Confidence            34679999999999999999999999999743  5679999996 999999999999863

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.40  E-value=1.4e-13  Score=103.09  Aligned_cols=57  Identities=21%  Similarity=0.394  Sum_probs=50.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCee---eeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT---GWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~---G~~P~~yv~~~~~   97 (290)
                      ..++|+|||.++.++||+|++||+|.|+..  .+++||.|++.|+.   |+||.|||+.+..
T Consensus         6 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~--~~~~Ww~g~~~g~~g~~G~fPsnYV~~~~~   65 (108)
T 2rqv_A            6 LYAIVLYDFKAEKADELTTYVGENLFICAH--HNCEWFIAKPIGRLGGPGLVPVGFVSIIDI   65 (108)
T ss_dssp             CCEEESSCCCCCSSSBCCCCSSEEECCCCE--ETTTEEEECCSSSSCCCEEEESTTCBCCCS
T ss_pred             eEEEECCCcCCCCCCcCCcCCCCEEEEeEe--cCCCEEEEEECCccCCeeEeecceEEEecC
Confidence            469999999999999999999999999754  57899999987666   9999999998754

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.40  E-value=6.9e-13  Score=92.71  Aligned_cols=60  Identities=30%  Similarity=0.555  Sum_probs=51.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++. +|||.|++..+  .|+.|+||++||+.+..
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~~W~~g~~~~~--~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY-EGWYRGYTLRK--KSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS-SSCEEEEESSC--SSCCEEECGGGEEECCC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC-CCeEEEEECCC--CCCEEEEehHHEEEecc
Confidence            56799999999999999999999999999995 89999998532  13489999999998654

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.40  E-value=2.9e-12  Score=96.43  Aligned_cols=60  Identities=32%  Similarity=0.589  Sum_probs=53.4

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...+++|+|||.++.++||+|++||+|.|+++.+++||+|+....|   +.||||++||+++.
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~~~g---~~G~~P~~yv~~~~   85 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTEGDWWEARSIATG---KSGYIPSNYVVPAD   85 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTTCEEEEESSSC---CEEEECTTTEEESS
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccCCCcEEEEECCCC---CEEEechHHcEECC
Confidence            3567999999999999999999999999999999999999974333   48999999999974

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.40  E-value=3.1e-13  Score=92.88  Aligned_cols=58  Identities=22%  Similarity=0.543  Sum_probs=51.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...++|+|+|.++.+++|+|++||+|.|+++.++|||.|+.. +   |+.|+||++||+++.
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           10 GEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDGWWIAKDA-K---GNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CEEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSSEEEEECS-S---SCEEEEESTTEEECC
T ss_pred             CCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCCeEEEEEC-C---CCEEEEehHHeEECc
Confidence            456899999999999999999999999999989999999943 2   348999999999864

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=94.21  Aligned_cols=75  Identities=27%  Similarity=0.468  Sum_probs=62.8

Q ss_pred             CeeeeccCCcccCCccCCCccceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEe-CCeeEEecCCCeEecCC
Q psy7076          82 GQTGWFPESYVEPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYVVPYEA  159 (290)
Q Consensus        82 g~~G~~P~~yv~~~~~~~~~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~-~g~~G~~P~~~v~~~~~  159 (290)
                      |..|.+|...+.+...   .....++|+|+|.++..+||+|++||+|.|++. +++||.++. +|+.|+||.+||+.+..
T Consensus         1 gssgs~P~~~~~p~~~---~~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~g~~G~~P~~yv~~~~~   77 (85)
T 2yuq_A            1 GSSGSSGEDNRRPLWE---PEETVVIALYDYQTNDPQELALRRNEEYCLLDSSEIHWWRVQDRNGHEGYVPSSYLVEKSP   77 (85)
T ss_dssp             CCCSSCCCCCCCCSSC---SSSCEEEESSCCCCSCSSBCCCCBTEEEEEEECCSSSEEEEECSSSCEEEEETTTCEECCC
T ss_pred             CCCCCCCCCCCCCCCC---CCCeEEEECcCCCCCCCCcCCCCCCCEEEEEEecCCCeEEEEECCCCEEEEehHHeEEccC
Confidence            4567788877755422   245689999999999999999999999999988 578999985 89999999999999753

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.39  E-value=1.2e-13  Score=94.67  Aligned_cols=59  Identities=22%  Similarity=0.484  Sum_probs=51.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++.+++||.++.. +   |+.||||++||+++..
T Consensus         8 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~~~   66 (67)
T 1aww_A            8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-N---GQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT-T---SCBCCEETTTBCCSCC
T ss_pred             CeEEEECccCCCCCCCCccCCCCCEEEEEEccCCCcEEEEEC-C---CCEEEEchHhEEEcCC
Confidence            456999999999999999999999999999989999999843 2   3489999999998643

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.39  E-value=8.1e-13  Score=93.13  Aligned_cols=60  Identities=27%  Similarity=0.614  Sum_probs=52.3

Q ss_pred             CceEEeccCCCC-CCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         219 EIATVLAPYTAT-SSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       219 ~~~~a~~dy~~~-~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..++|+|||.++ .++||+|++||+|.|+++. ++|||+|+.. .   |+.||||++||+.+....
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~~~gW~~g~~~-~---g~~G~~P~~yv~~~~~~~   71 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNVGGGWLEGKNN-K---GEQGLVPTDYVEILPNDG   71 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCCSSSEEEEECT-T---CCEEEEETTTEEEECCCC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccCCCCeEEEEEC-C---CCEEEeehHHeEECCCCC
Confidence            569999999999 9999999999999999985 7999999943 2   348999999999986544

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.39  E-value=3.5e-13  Score=94.30  Aligned_cols=57  Identities=23%  Similarity=0.542  Sum_probs=50.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...++|+|||+++.++||+|++||+|.|+++. +.+||.|++.     |+.|+||++||+.+.
T Consensus         9 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            9 SMEAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN-----GKDGFIPKNYIEMKP   66 (74)
T ss_dssp             -CEEEESSCBCCSSTTBCCBCTTCEEECCBCSSCSSEEEEEET-----TEEEEEEGGGEEEEC
T ss_pred             CeEEEECccCCCCCCCeeeEcCCCEEEEeEecCCCCEEEEEEC-----CCEEEEehHhEEEcC
Confidence            45699999999999999999999999999987 6799999974     348999999999864

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.39  E-value=2.5e-13  Score=95.53  Aligned_cols=58  Identities=31%  Similarity=0.792  Sum_probs=52.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||+++.++||+|++||+|.|+++.+++||.|++.     |+.||||++||+.+..
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A           10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN-----GRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEET-----TEEEEECTTTSEECCH
T ss_pred             CEEEEECccCCcCCCCcccCCCCCEEEEEEecCCCEEEEEEC-----CCEEEechHHEEECCc
Confidence            456999999999999999999999999999989999999974     3489999999999754

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=1.1e-12  Score=90.66  Aligned_cols=59  Identities=19%  Similarity=0.432  Sum_probs=51.1

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..++|+|||.++.++||+|++||+|.|++.. .+|||.++.. +   |+.||||++||+.+...
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~~~gW~~~~~~-~---g~~G~~P~~yv~~~~~~   67 (70)
T 2ct4_A            8 GHCVAIYHFEGSSEGTISMAEGEDLSLMEEDKGDGWTRVRRK-E---GGEGYVPTSYLRVTSGP   67 (70)
T ss_dssp             CEEEESSCBCCCSTTCCCBCTTCEEEEEECCSSSCEEEEECS-S---SCEEEEEGGGEEECCCC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEeccCCCCeEEEEeC-C---CCEEEEEhHHeEEcCCC
Confidence            4599999999999999999999999999986 4679999965 2   34899999999987543

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.38  E-value=1.1e-12  Score=95.69  Aligned_cols=61  Identities=25%  Similarity=0.614  Sum_probs=52.9

Q ss_pred             CCCceEEeccCCCCCCC-ceecCCCCEEEEEEcCCC-----CeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         217 KPEIATVLAPYTATSSE-QLSLSRGQLIMIRKKTTT-----GWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~-eLs~~~Gd~i~v~~~~~~-----gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...+++|+|||.++.++ ||+|++||+|.|+++.+.     |||+|++. .   |+.||||++||+.+...
T Consensus        13 ~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~-~---g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-N---GNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             TCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEET-T---SCEEEEEGGGEEECCCC
T ss_pred             cCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeC-C---CCEEEEehHHeEECCCC
Confidence            35679999999999999 999999999999999776     99999973 2   34899999999998653

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.38  E-value=5.9e-13  Score=104.88  Aligned_cols=60  Identities=40%  Similarity=0.821  Sum_probs=53.0

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++..+||+|++||+|.|+.. ..++|||.|+++|+.||||.+||+.+..
T Consensus         4 ~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~-~~~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            4 TFGTAKARYDFCARDRSELSLKEGDIIKILNK-KGQQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCCEEEESSCCCCSSSSBCCCCTTCEEEEEEC-CCSSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             cCeEEEECCccCCCCCCcCCCCCCCEEEEEEe-cCCCCeEEEEECCeeEEechHHEEEccc
Confidence            35689999999999999999999999999743 2478999999999999999999998753

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.38  E-value=6.1e-13  Score=99.71  Aligned_cols=63  Identities=29%  Similarity=0.560  Sum_probs=51.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc-CCCC--eEEEEEcCC---CCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTG--WWEGELQAK---GKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~g--W~~g~~~~~---g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...++|+|||.++.++||+|++||+|.|+++ .+.|  ||.|++...   ...|+.||||++||+++..
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~   90 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQT   90 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEE
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccc
Confidence            3458999999999999999999999999998 3445  999998732   1124589999999998754

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.37  E-value=4.6e-13  Score=97.28  Aligned_cols=60  Identities=28%  Similarity=0.541  Sum_probs=50.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc-------------CCC--CeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK-------------TTT--GWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-------------~~~--gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...++|+|+|.++.++||+|++||+|.|++.             ...  |||.|++..+   |+.|+||++||+.+..
T Consensus        11 ~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~---g~~G~fP~nyVe~i~~   85 (90)
T 3o5z_A           11 GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERT---RQRGDFPGTYVEFLGP   85 (90)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTT---CCEEEEEGGGEEEEEE
T ss_pred             CcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCC---CCEEEeehHHEEEecc
Confidence            4569999999999999999999999999942             233  8999997543   3489999999999764

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.37  E-value=2.4e-12  Score=92.67  Aligned_cols=55  Identities=20%  Similarity=0.488  Sum_probs=48.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..+++|+|||.++.++||+|++||+|.|++. ++|||.|+.. .   |+.|+||++||+.
T Consensus        31 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~-~---g~~G~~P~~yv~~   85 (86)
T 2jxb_A           31 EVIVIAKWDYTAQQDQELDIKKNERLWLLDD-SKTWWRVRNA-A---NRTGYVPSNYVER   85 (86)
T ss_dssp             CEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CSSEEEEECT-T---SCEEEEEGGGBCC
T ss_pred             ceEEEECccCCCCCCCEeccCCCCEEEEEec-CCCeEEEEEC-C---CCEEEeehHHEEe
Confidence            4579999999999999999999999999998 6799999953 2   3489999999974

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.37  E-value=1.3e-13  Score=98.67  Aligned_cols=60  Identities=33%  Similarity=0.654  Sum_probs=50.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccc-----------cC--CCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVK-----------QN--AEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~-----------~~--~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ..+|+|+|+|.++.++||+|++||+|.|+..           ..  .+++||.|+.  +|+.|+||.+||+.+..
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            3689999999999999999999999999732           11  2348999965  79999999999997653

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.37  E-value=3.5e-13  Score=94.24  Aligned_cols=57  Identities=32%  Similarity=0.563  Sum_probs=50.5

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~~~~~   97 (290)
                      ...++|+|+|.++.++||+|++||+|.|+..   +++||.|++   +|+.|+||.+||+..+.
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~---~~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILET---YEGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEB---SSSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEc---CCCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            3579999999999999999999999999754   378999998   79999999999987653

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.36  E-value=1.5e-12  Score=91.96  Aligned_cols=59  Identities=29%  Similarity=0.585  Sum_probs=45.6

Q ss_pred             CccEEEEeccccCCC------CCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCc
Q psy7076          37 EYRRYRAIYEFVSRN------GDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCD   96 (290)
Q Consensus        37 ~~~~~~al~~~~~~~------~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~   96 (290)
                      +.++++++|+|.+..      .+||+|++||+|.|+.. ..+++||.|++  +|+.||||+|||+++.
T Consensus        11 ~~p~~~~~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~-~~~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           11 GLPKMEVFQEYYGIPPPPGAFGGFLRLNPGDIVELTKA-EAEHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             SCCCEEECSCBSSCSCCSSSSCCCCCBCTTCEEEEEEC-CSSCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             CCccEEEEEECCCCCCCCCCCCCccCCCCCCEEEEEEc-CCCCCeEEEEECCCCCEEEEehHHeEECC
Confidence            345556666555544      49999999999999743 23789999994  8999999999998763

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.36  E-value=2e-12  Score=93.87  Aligned_cols=59  Identities=25%  Similarity=0.593  Sum_probs=51.4

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      .+++|+|||.++.+++|+|++||+|.|++. ++|||.|+....|   +.|+||++||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~g~~~~~g---~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE-SGEWWKARSLATR---KEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC-SSSEEEEEETTTC---CEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe-CCCEEEEEECCCC---CEEEEehhheEECCCC
Confidence            468999999999999999999999999998 5799999985433   4899999999998653

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.35  E-value=9.5e-13  Score=93.45  Aligned_cols=59  Identities=24%  Similarity=0.622  Sum_probs=50.7

Q ss_pred             CCceEEeccCCCCCCC-ceecCCCCEEEEEEcCCC-----CeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSE-QLSLSRGQLIMIRKKTTT-----GWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~-eLs~~~Gd~i~v~~~~~~-----gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++ ||+|++||+|.|+++.+.     |||+|++. .   |+.||||++||+.+..
T Consensus        14 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~-~---g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           14 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK-N---GNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT-T---SCEEEEEGGGEEEC--
T ss_pred             CEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeC-C---CCeEEEEHHHeEEcCC
Confidence            4569999999999999 999999999999999776     99999973 2   3489999999998753

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.35  E-value=1.4e-12  Score=108.94  Aligned_cols=58  Identities=28%  Similarity=0.570  Sum_probs=50.9

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccc---cCCCCCeEEEee----------CCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVK---QNAEPGWLAGEL----------RGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~---~~~~~~W~~g~~----------~g~~G~~P~~yv~~~   95 (290)
                      ..+|+|||+|.++..+||+|++||+|.|+..   ...++|||+|++          +|+.||||.|||+.+
T Consensus       142 ~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             ceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            5689999999999999999999999999751   136789999996          499999999999865

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.35  E-value=1e-12  Score=90.79  Aligned_cols=57  Identities=30%  Similarity=0.603  Sum_probs=43.9

Q ss_pred             cEEEEeccccCC------CCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCCc
Q psy7076          39 RRYRAIYEFVSR------NGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCD   96 (290)
Q Consensus        39 ~~~~al~~~~~~------~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~~   96 (290)
                      ++++|++.|.+.      ..+||+|++||+|.|+.. ..+++||.|+  .+|+.||||++||++++
T Consensus         5 p~~~~~~~y~~~~~~~~~~~~eLsf~~Gd~i~v~~~-~~~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C            5 PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKA-EAEHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             CEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEEC-CTTCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CcceEEEEEEecCCCCCCCCCcCCcCCCCEEEEEeC-CCCCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            455565555554      344999999999999743 2478999995  49999999999998753

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.34  E-value=1e-12  Score=96.03  Aligned_cols=62  Identities=29%  Similarity=0.541  Sum_probs=53.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCC----CCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT----TGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~----~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      ...++|+|||.++.++||+|++||+|.|+++.+    .+||+|++.  ++  +.||||++||+.+.....
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~--~~--~~G~~P~~yv~~~~~~~~   82 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLD--GQ--TTGLIPANYVKILGKRRG   82 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESS--SS--SCEEECSTTEEECCCBCC
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeC--Cc--CEEEEehHHEEEcCCccc
Confidence            456999999999999999999999999999977    699999865  22  379999999999866443

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.34  E-value=1.4e-12  Score=90.17  Aligned_cols=58  Identities=22%  Similarity=0.601  Sum_probs=49.1

Q ss_pred             CceEEeccCCCCCCC--ceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         219 EIATVLAPYTATSSE--QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~--eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..++|+|+|.++..+  +|+|++||+|.|++. +++||.|+.. .   |+.|+||++||+.+...
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~~~Ww~g~~~-~---g~~G~~P~~yv~~~~~~   65 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI-EGRWWKARRA-N---GETGIIPSNYVQLIDGP   65 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT-TSSEEEEECT-T---SCEEEEEGGGEEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc-CCCeEEEEEC-C---CCEEEEehHHEEECCCC
Confidence            458999999998765  999999999999987 7899999854 2   34899999999987543

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.33  E-value=2.3e-12  Score=90.16  Aligned_cols=57  Identities=23%  Similarity=0.379  Sum_probs=49.7

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee----CCeeeeccCCcc
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL----RGQTGWFPESYV   92 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~----~g~~G~~P~~yv   92 (290)
                      -+...++|||+|.+...+||+|++||+|+|++....+++||.++.    .+++|+||.|||
T Consensus        15 g~~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           15 GGCELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             CCCEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             CCceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCCCCCcEeeccccEE
Confidence            345779999999999999999999999999876544689999996    347899999999

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.33  E-value=9.5e-13  Score=100.78  Aligned_cols=58  Identities=28%  Similarity=0.445  Sum_probs=51.3

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~~~~~   97 (290)
                      ...++|||+|.++.++||+|++||+|.|+..  .+++||.|+.   .|+.||||.+||+.+..
T Consensus         3 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~--~~~~Ww~g~~~~~~g~~G~~P~nyv~~~~~   63 (120)
T 2kym_A            3 PLFAVTLYEFKAERDDELDVSPGENLSICAH--YDYEWFIAKPINRLGGPGLVPVSYVRIIDL   63 (120)
T ss_dssp             CCEEEECSCBCCCSTTCCCBCTTCEEEEEEE--ETTTEEEEEESSSCSCCCCEEGGGEEEECS
T ss_pred             CEEEEEcccCCCCCCCccCCCCCCEEEEEEe--cCCCEEEEEECCCCCCEEEEchHHEEEccC
Confidence            3579999999999999999999999999754  5789999985   68899999999998754

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.32  E-value=9.7e-13  Score=94.12  Aligned_cols=60  Identities=25%  Similarity=0.484  Sum_probs=50.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc---------------CCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK---------------TTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~---------------~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++               .+.|||.|+...+   |+.|+||++||+.+..
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~---g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETT---GERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTT---TEEEEEEGGGEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCC---CCEEEEehHHEEECCc
Confidence            3458999999999999999999999999964               2349999987643   4589999999998754

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.32  E-value=1.3e-13  Score=95.76  Aligned_cols=61  Identities=30%  Similarity=0.607  Sum_probs=52.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceee-EecCCceEEecCCCc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVG-WFPASYVKVMGGGGI  283 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G-~fP~~~v~~~~~~~~  283 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+++||.|++.  ++   .| |||++||+.+.....
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g~---~gG~~P~~yv~~~~~~~~   67 (71)
T 1hsq_A            6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYG--GK---KQLWFPSNYVEEMVNPEG   67 (71)
T ss_dssp             SSCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTTEECCBCS--SS---CSCCEETTTCCSCSCCCC
T ss_pred             CeEEEECCCCCcCCCCccCCCCCCEEEEEEecCCCEEEEEEC--Ce---EEeEEChHHcEECCCccc
Confidence            345899999999999999999999999999989999999975  33   44 999999999876543

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.32  E-value=1.7e-12  Score=94.34  Aligned_cols=57  Identities=32%  Similarity=0.569  Sum_probs=50.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~   98 (290)
                      ..++|+|+|.++.++||+|.+||+|.|+..   +++||.|+.  +|+.||||.+||+.+...
T Consensus         4 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            4 IIVVALYDYVSWSPDDLSFQKGDQMVVLEE---SGEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC---SSSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEEEECCccCcCCcCcCCCCCCCEEEEEEe---CCCEEEEEECCCCCEEEEehhheEECCCC
Confidence            469999999999999999999999999743   468999998  899999999999987653

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.31  E-value=1.6e-11  Score=93.68  Aligned_cols=59  Identities=24%  Similarity=0.492  Sum_probs=50.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ..+++|+|+|+++.++||+|++||+|.|+++. +|||+|++...  .|+.|+||++||+.+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~gWw~g~~~~~--~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-GDWYRGYLIKH--KMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-TTEEEEEESSC--TTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-CCEEEEEECCC--CCCEEEeChhHEEEec
Confidence            56799999999999999999999999999985 69999998531  1348999999998753

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.31  E-value=4.7e-12  Score=99.72  Aligned_cols=58  Identities=34%  Similarity=0.704  Sum_probs=52.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++. ++|||.|++.     |+.||||++||+.+..
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~gWw~g~~~-----g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKGQQGWWRGEIY-----GRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSSEEEEEET-----TEEEEEETTSEEESSC
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecCCCCeEEEEEC-----CeeEEechHHEEEccc
Confidence            45699999999999999999999999999984 8999999974     3489999999999854

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.31  E-value=1.3e-12  Score=99.15  Aligned_cols=61  Identities=21%  Similarity=0.440  Sum_probs=51.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEE-----cCCCCeEEEEEcCC-----CCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRK-----KTTTGWWEGELQAK-----GKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~-----~~~~gW~~g~~~~~-----g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|||.++.++||+|++||+|.|++     ..++|||.|++..+     ...|+.|+||++||+++
T Consensus        44 ~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             ceEEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCCCeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            456999999999999999999999999999     78999999987521     01145899999999986

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.30  E-value=8.9e-12  Score=84.22  Aligned_cols=43  Identities=26%  Similarity=0.760  Sum_probs=39.5

Q ss_pred             CCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCCeEecC
Q psy7076         116 EPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYE  158 (290)
Q Consensus       116 ~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~v~~~~  158 (290)
                      ..+||+|++||+|.|++. +++||.++.+|+.|+||.+||+.+.
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~   45 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYVKKLD   45 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSSEEEEEETTEEEEEEGGGEEECS
T ss_pred             CccccCCCCCCEEEEEEecCCCEEEEEECCcEEEEeHHHEEEcC
Confidence            467899999999999998 6889999999999999999999875

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.28  E-value=3e-13  Score=95.35  Aligned_cols=56  Identities=18%  Similarity=0.421  Sum_probs=49.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..+++|+|||.++..+||+|++||+|.|+++.++|||.|+.. .   |+.||||++||+.
T Consensus        20 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~---g~~G~~P~~yv~~   75 (77)
T 1awj_A           20 ETLVIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-N---GHEGYAPSSYLVE   75 (77)
T ss_dssp             SSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSSBCCCCCS-S---SCCCCCBSTTCCC
T ss_pred             ceEEEECccCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEEC-C---CCEEEEehHHEEE
Confidence            456999999999999999999999999999988999999852 2   3489999999976

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.25  E-value=1.5e-11  Score=84.85  Aligned_cols=51  Identities=31%  Similarity=0.697  Sum_probs=41.4

Q ss_pred             ccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         225 APYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       225 ~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ++|.++..+||+|++||+|.|+++ .+.+||+|++..+   |+.|+||++||+++
T Consensus        17 ~~~~~~~~~eLsf~~Gd~i~v~~~~~~~~Ww~g~~~~~---g~~G~fP~~yv~~~   68 (70)
T 1gcq_C           17 PPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTAT---NEVGWFPCNRVHPY   68 (70)
T ss_dssp             SCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTT---TEEEEEEGGGEEEC
T ss_pred             CCCCCCCCCcCCcCCCCEEEEEeCCCCCCCeEEEeCCC---CCEeEeehHHeEEC
Confidence            334444455999999999999999 6889999986644   45899999999975

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.23  E-value=1.6e-10  Score=96.45  Aligned_cols=61  Identities=21%  Similarity=0.439  Sum_probs=51.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEE-----cCCCCeEEEEEcCC-----CCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRK-----KTTTGWWEGELQAK-----GKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~-----~~~~gW~~g~~~~~-----g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|||+|.++..+||+|++||+|.|++     ..++|||+|++...     ...|+.||||++||+.+
T Consensus       142 ~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             CEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             ceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCCCeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            456999999999999999999999999999     78899999997411     00134899999999975

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.23  E-value=1.3e-11  Score=104.26  Aligned_cols=59  Identities=36%  Similarity=0.745  Sum_probs=53.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++.++||+|++||+|.|+..  .+++||.|+++|+.||||.+||+.+..
T Consensus       157 ~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDN--SDPNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEEC--CSSSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             CceEEEecCCccCCCCCcCCCCCCCEEEEEEe--CCCCeEEEEECCeEEEEeHHHeEECCC
Confidence            45789999999999999999999999999754  678999999999999999999997753

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.22  E-value=2.9e-11  Score=85.32  Aligned_cols=55  Identities=27%  Similarity=0.574  Sum_probs=44.0

Q ss_pred             eEEeccCCCCC---CCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         221 ATVLAPYTATS---SEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       221 ~~a~~dy~~~~---~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      +.++|+|.++.   .+||+|++||+|.|+++. ++|||.|++..+   |+.|+||++||+++
T Consensus        18 ~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~gWw~g~~~~~---g~~G~fP~nyV~~~   76 (78)
T 1k1z_A           18 FQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHNWWEGRNTAT---NEVGWFPCNRVHPY   76 (78)
T ss_dssp             CSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCSCEEEEETTT---TEEEEECSTTEEES
T ss_pred             EEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCCeEEEEECCC---CCEEEEehHHeEEC
Confidence            34455565542   599999999999999994 899999997533   45899999999975

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.21  E-value=1.1e-11  Score=101.19  Aligned_cols=56  Identities=21%  Similarity=0.455  Sum_probs=50.5

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP   94 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~   94 (290)
                      ....++|+|+|.++.++||+|++||+|.|+..  .+++||.|+. +|+.||||+|||+.
T Consensus       117 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          117 IIEVVVGTFKFTGERETDLPFEQGERLEILSK--TNQDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEEC--CSSSEEEEECTTCCEEEEEGGGEEE
T ss_pred             cccEEEEecCcccCCCCccccccCCEEEEEEc--cCCCeEEEEECCCCEEEEChHHEEe
Confidence            45689999999999999999999999999743  5789999995 99999999999974

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.20  E-value=1.7e-11  Score=104.55  Aligned_cols=60  Identities=32%  Similarity=0.624  Sum_probs=53.3

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe-eCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE-LRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~-~~g~~G~~P~~yv~~~~~~   98 (290)
                      ....++|+|+|.++..+||+|++||+|.|+..  .+++||.|+ .+|+.||||+|||+.+...
T Consensus       135 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~  195 (230)
T 2dvj_A          135 EAEYVRALFDFNGNDEEDLPFKKGDILRIRDK--PEEQWWNAEDSEGKRGMIPVPYVEKYRPA  195 (230)
T ss_dssp             CCCCCBCCSCCCCSSSSSCCCCSSCBCCCCBC--SCSSEEEEECTTSCEEEEEGGGSCCCCSS
T ss_pred             cceeEEEeeeecCCCCCCccCcCCCEEEEEEc--cCCCcEEEEeCCCCEEEEehHHeEEcCCC
Confidence            34679999999999999999999999999754  578999999 6999999999999988653

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.18  E-value=2.1e-11  Score=106.91  Aligned_cols=59  Identities=37%  Similarity=0.747  Sum_probs=53.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|+|||.++.++||+|++||+|.|+..  .++|||.|+.+|+.||||++||+.+...
T Consensus         2 ~~~~~a~~~~~~~~~~el~~~~gd~i~v~~~--~~~~w~~~~~~g~~G~~P~~~v~~~~~~   60 (283)
T 3jv3_A            2 SCQVIGMYDYTAQNDDELAFSKGQIINVLNK--EDPDWWKGEVSGQVGLFPSNYVKLTTDM   60 (283)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEC--CSTTEEEEEETTEEEEEEGGGEEEGGGS
T ss_pred             CeEEEEccccCCCCCCcCCCCCCCEEEEEec--CCCCEEEEEECCCCCcCCCccccccCcc
Confidence            3579999999999999999999999999754  5789999999999999999999977653

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.15  E-value=3.3e-11  Score=98.38  Aligned_cols=56  Identities=18%  Similarity=0.420  Sum_probs=50.1

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCD   96 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~   96 (290)
                      ...++|+|||.++.++||+|++||+|.|+..   +++||.++.  +|+.|+||.+||+...
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~---~~~Ww~~~~~~~g~~G~vP~~yv~~~~   69 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ---SGEWWKAQSLTTGQEGFIPFNFVAKAN   69 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC---CSSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc---CCCEEEEEECCCCceeeeccccccccc
Confidence            3689999999999999999999999999753   568999998  8999999999998654

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.15  E-value=3.4e-11  Score=84.24  Aligned_cols=58  Identities=26%  Similarity=0.424  Sum_probs=50.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVK  276 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~  276 (290)
                      .+.++|+|||.++...||+|++||++.|+++.  +++||+++.... ..+++|++|++||.
T Consensus        17 ~e~~valydF~Ar~~~ELS~~kGd~vevle~~~~~peW~lvr~~~~-~~~qeGlVPsnyl~   76 (82)
T 1u3o_A           17 CELTVVLQDFSAAHSSELSIQVGQTVELLERPSERPGWCLVRTTER-SPPQEGLVPSSTLC   76 (82)
T ss_dssp             CEEEECSSCBCCCSTTCCCBCTTCEEEESSCTTSSTTEEEEEESSS-SSCEEEEEEGGGSC
T ss_pred             ceEEEEEeeecCCCCCeeeEcCCCEEEEEecCCCCCCEEEEEECCC-CCCcEeeccccEEe
Confidence            35689999999999999999999999999986  489999998653 23578999999993

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.14  E-value=2.6e-11  Score=99.74  Aligned_cols=58  Identities=29%  Similarity=0.526  Sum_probs=50.9

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|+|.++.++||+|++||+|.|+..  .+ +||.|++   +|+.|+||++||+....
T Consensus        16 ~~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~--~~-~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           16 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQET--CG-DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             SCCEEEESSCBCCSSTTBCCBCTTCEEEEEEE--ET-TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             CceEEEEeeeeCCCCCCCCCcCCCCEEEEEec--CC-CEEEEEEecCCCceEEECcceEEEecc
Confidence            35689999999999999999999999999754  23 5999998   78999999999997654

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.14  E-value=6.6e-11  Score=96.48  Aligned_cols=56  Identities=27%  Similarity=0.525  Sum_probs=50.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.++|||.|+.. .   |+.|+||++||+.
T Consensus       118 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~-~---g~~G~~P~nyv~~  173 (174)
T 3qwx_X          118 IEVVVGTFKFTGERETDLPFEQGERLEILSKTNQDWWEARNA-L---GTTGLVPANYVQI  173 (174)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCSSSEEEEECT-T---CCEEEEEGGGEEE
T ss_pred             ccEEEEecCcccCCCCccccccCCEEEEEEccCCCeEEEEEC-C---CCEEEEChHHEEe
Confidence            456999999999999999999999999999999999999952 2   3489999999986

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.14  E-value=8.7e-11  Score=95.87  Aligned_cols=58  Identities=21%  Similarity=0.558  Sum_probs=51.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ..+++|+|||.++.++||+|++||+|.|++. +.+||.++...+|   ++|+||++||+++.
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~Ww~~~~~~~g---~~G~vP~~yv~~~~   69 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTG---QEGFIPFNFVAKAN   69 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-CSSEEEEEETTTC---CEEEEEGGGEEETT
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-CCCEEEEEECCCC---ceeeeccccccccc
Confidence            4679999999999999999999999999999 6799999985434   48999999999854

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.09  E-value=8.9e-11  Score=102.89  Aligned_cols=59  Identities=36%  Similarity=0.685  Sum_probs=52.9

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..++|+|||.++.++||+|++||+|.|++..++|||.|+..     |+.||||++||+.+....
T Consensus         3 ~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~w~~~~~~-----g~~G~~P~~~v~~~~~~~   61 (283)
T 3jv3_A            3 CQVIGMYDYTAQNDDELAFSKGQIINVLNKEDPDWWKGEVS-----GQVGLFPSNYVKLTTDMD   61 (283)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCSTTEEEEEET-----TEEEEEEGGGEEEGGGSC
T ss_pred             eEEEEccccCCCCCCcCCCCCCCEEEEEecCCCCEEEEEEC-----CCCCcCCCccccccCccc
Confidence            45899999999999999999999999999999999999975     348999999999976543

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.07  E-value=1.9e-10  Score=94.60  Aligned_cols=60  Identities=23%  Similarity=0.466  Sum_probs=51.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|+|.++.++||+|++||+|.|++..+ |||+|++...  .|+.|+||++||+.+..
T Consensus        17 ~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~-~W~~g~~~~~--~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           17 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG-DWYRGYLIKH--KMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET-TEEEEEETTE--EEEEEEEEGGGEEEECC
T ss_pred             ceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC-CEEEEEEecC--CCceEEECcceEEEecc
Confidence            457999999999999999999999999999866 6999998421  24589999999999754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.03  E-value=1.6e-10  Score=110.30  Aligned_cols=59  Identities=32%  Similarity=0.686  Sum_probs=50.8

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|||+++.++||+|++||+|.|+..  .+++||.|+.  +|+.||||.|||+....
T Consensus        84 ~~~~~~alyd~~~~~~~el~~~~gd~i~v~~~--~~~~ww~~~~~~~g~~G~~P~~yv~~~~~  144 (535)
T 2h8h_A           84 GVTTFVALYDYESRTETDLSFKKGERLQIVNN--TEGDWWLAHSLSTGQTGYIPSNYVAPSDS  144 (535)
T ss_dssp             ---CEEESSCBCCCSSSBCCBCTTCEEEEEEC--SSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             CCcEEEEccccCCcCCCcCCcCCCCEEEEEEe--cCCCceEEEECCCCcceEecchhhccccc
Confidence            34579999999999999999999999999754  5789999998  89999999999987643

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.02  E-value=2.6e-10  Score=106.94  Aligned_cols=60  Identities=28%  Similarity=0.552  Sum_probs=53.7

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ....++|+|+|.+..++||+|.+||+|.|+..  .+++||.|+.+|+.||||.+||+.+...
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   88 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDA--TNREWWWGRVADGEGWFPASFVRLRVNQ   88 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEECSCC
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEe--cCCCEEEEEECCcEEEEehhHeeeccCc
Confidence            35789999999999999999999999999743  6889999999999999999999976543

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.00  E-value=5.5e-10  Score=105.56  Aligned_cols=62  Identities=11%  Similarity=0.232  Sum_probs=54.6

Q ss_pred             CCCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       216 ~~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      +....++|+|+|.++.++||+|++||+|.|+++.++|||+|+...+   |+.|+||++||+++..
T Consensus       440 q~~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~gW~~G~~~~~---g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          440 QNAHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDGYSKGVNRKL---GRTGLYPSYKVREKIE  501 (526)
T ss_dssp             CCCCEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSSEEEEEETTT---TEEEEEEGGGEEECCC
T ss_pred             ccccceEEeecCCCCCCCcCCcCCCCEEEEccccCCCeeEEEeCCC---CCEEEECchheeEccc
Confidence            3456799999999999999999999999999999999999997544   4589999999999754

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.00  E-value=4.9e-10  Score=106.88  Aligned_cols=59  Identities=25%  Similarity=0.530  Sum_probs=51.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...++|+|||+++.++||+|++||+|.|+++.++|||.|+...+|   ++||||++||+...
T Consensus        85 ~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~ww~~~~~~~g---~~G~~P~~yv~~~~  143 (535)
T 2h8h_A           85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTG---QTGYIPSNYVAPSD  143 (535)
T ss_dssp             --CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSSEEEEEETTTC---CEEEEEGGGEEETT
T ss_pred             CcEEEEccccCCcCCCcCCcCCCCEEEEEEecCCCceEEEECCCC---cceEecchhhcccc
Confidence            456999999999999999999999999999999999999985333   48999999999853

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.99  E-value=3.1e-10  Score=96.69  Aligned_cols=59  Identities=25%  Similarity=0.702  Sum_probs=53.3

Q ss_pred             ceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEE-eCCeeEEecCCCeEecCCCC
Q psy7076         103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGT-IGDRTGLFPSNYVVPYEAQT  161 (290)
Q Consensus       103 ~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~-~~g~~G~~P~~~v~~~~~~~  161 (290)
                      ...++|+|+|.++..+||+|++||+|.|+++ +++||.++ .+|+.|+||++||+.+....
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~  196 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKYRPAS  196 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSSEEEEECTTSCEEEEEGGGSCCCCSSC
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCCcEEEEeCCCCEEEEehHHeEEcCCCC
Confidence            4568999999999999999999999999988 68999999 58999999999999987543

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.98  E-value=4.5e-10  Score=104.80  Aligned_cols=59  Identities=24%  Similarity=0.537  Sum_probs=51.7

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC-CeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~-g~~G~~P~~yv~~~~~   97 (290)
                      ...++|+|||.++.++||+|++||+|.|+.. ..+++||.|+.. |+.|+||+|||++...
T Consensus        11 ~~~~~aly~~~~~~~~el~~~~gd~i~v~~~-~~~~~ww~~~~~~g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAV-TKDPNWYKAKNKVGREGIIPANYVQKREG   70 (450)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEE-CSSTTEEEEECTTCCEEEEEGGGEEECCC
T ss_pred             CCEEEECCCcCccCCCcCCCCCCCEEEEeec-cCCCCceEEEECCCceeeechhccccccc
Confidence            4579999999999999999999999999743 356789999985 9999999999997654

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=98.96  E-value=4.7e-10  Score=106.04  Aligned_cols=58  Identities=34%  Similarity=0.468  Sum_probs=51.8

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~~~   97 (290)
                      ...++|||+|.++.++||+|++||+|.|++.  .++|||.|+  ++|+.|+||+|||+.+..
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~--~~~gW~~G~~~~~g~~G~fPsnyV~~~~~  501 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGN--HWDGYSKGVNRKLGRTGLYPSYKVREKIE  501 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEE--CSSSEEEEEETTTTEEEEEEGGGEEECCC
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccc--cCCCeeEEEeCCCCCEEEECchheeEccc
Confidence            3679999999999999999999999999743  678999999  599999999999987643

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.95  E-value=6e-10  Score=104.00  Aligned_cols=57  Identities=33%  Similarity=0.721  Sum_probs=51.3

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||.|+.  +|+.||||+|||+....
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~--~~~~ww~~~~~~~g~~G~~P~~yv~~~~~   61 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNN--TEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCC--CSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEecc--CCCCceEEEEcCCCcccccCccccccccc
Confidence            579999999999999999999999999743  5789999998  89999999999987643

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=98.94  E-value=1.2e-09  Score=102.56  Aligned_cols=58  Identities=28%  Similarity=0.567  Sum_probs=52.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|++..++|||.|++.  |   +.||||++||+.+..
T Consensus        30 ~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           30 VVCAEALWDHVTMDDQELGFKAGDVIEVMDATNREWWWGRVA--D---GEGWFPASFVRLRVN   87 (466)
T ss_dssp             CEEEEESSCBCCCCTTBCCBCTTCEEEEEECCSSSEEEEEET--T---EEEEEEGGGEEECSC
T ss_pred             ccEEEEccccCCCCCCcCCCCCCCEEEEEEecCCCEEEEEEC--C---cEEEEehhHeeeccC
Confidence            467999999999999999999999999999999999999986  3   489999999998754

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.91  E-value=9.7e-10  Score=103.79  Aligned_cols=59  Identities=25%  Similarity=0.599  Sum_probs=51.7

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ...|+|+|||.++.++||+|++||+|.|+.. ..+.+||.++..|+.|+||.|||+.+..
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~-~~~~~w~~~~~~~~~G~~P~~yv~~~~~  101 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGY-NHNGEWCEAQTKNGQGWVPSNYITPVNS  101 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CTTSSEEEEECSSCEEEEEGGGEEESSS
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeec-CCCCCceeeeecCCcceecccccccccc
Confidence            4579999999999999999999999999754 2367999999999999999999987654

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=98.90  E-value=2.3e-09  Score=99.95  Aligned_cols=59  Identities=19%  Similarity=0.406  Sum_probs=52.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||+++.++||+|++||+|.|+++ .+.+||.|+.. +   |+.|+||++||++...
T Consensus        11 ~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~~~~ww~~~~~-~---g~~G~~P~~yv~~~~~   70 (450)
T 1k9a_A           11 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-V---GREGIIPANYVQKREG   70 (450)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-T---CCEEEEEGGGEEECCC
T ss_pred             CCEEEECCCcCccCCCcCCCCCCCEEEEeeccCCCCceEEEEC-C---Cceeeechhccccccc
Confidence            4569999999999999999999999999998 67899999965 3   4589999999998654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=98.86  E-value=2.2e-09  Score=100.15  Aligned_cols=58  Identities=26%  Similarity=0.550  Sum_probs=51.6

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      .+++|+|||+++.++||+|++||+|.|+++.++|||.|+...+|   ++||||++||+...
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~ww~~~~~~~g---~~G~~P~~yv~~~~   60 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTG---QTGYIPSNYVAPSD   60 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTC---CEEEEEGGGEEETT
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCCCCceEEEEcCCC---cccccCcccccccc
Confidence            35899999999999999999999999999999999999985333   48999999999853

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.86  E-value=2.5e-10  Score=107.68  Aligned_cols=57  Identities=40%  Similarity=0.754  Sum_probs=0.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeC-CeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR-GQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~-g~~G~~P~~yv~~~   95 (290)
                      ..+++|||+|.+...+||+|.+||+|.|+.. ..++|||.|++. |+.||||.+||+.+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~-~~~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMED-EDEQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEe-cCCCCeeEEEeCCCCEEEEeHHHceeC
Confidence            3579999999999999999999999999743 235699999996 99999999999875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.81  E-value=3.5e-09  Score=98.75  Aligned_cols=57  Identities=26%  Similarity=0.519  Sum_probs=50.3

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEe--eCCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGE--LRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~--~~g~~G~~P~~yv~~~~~   97 (290)
                      ...++|+|||.++.++||+|++||+|.|+..   +++||.|+  .+|+.|+||+|||+....
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~---~~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE---SGEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC---CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEec---CCCCeEEEECCCCceEEecchhcccccc
Confidence            3579999999999999999999999999743   47899999  599999999999987643

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.81  E-value=2.4e-09  Score=77.45  Aligned_cols=58  Identities=16%  Similarity=0.231  Sum_probs=47.9

Q ss_pred             ccEEEEeccc--cCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEF--VSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~--~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      ...++|+|+|  ......+|+|++|++|.|+..  .+.+||.+++ .|+.|+||.+||+.++.
T Consensus        39 l~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~--~e~~wwLcRNs~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           39 LYSTKVTTSITSKKWGTRDLQVKPGESLEVIQT--TDDTKVLCRNEEGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             SSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEE--SSSSEEEEEETTTEEEEEEGGGSCC---
T ss_pred             EEEEEEeeccccccCCcccCCcCCCCEEEEEEe--CCCCEEEEECCCCCCCceeHHHhccccc
Confidence            3567888888  667899999999999999754  4569999998 99999999999997653

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=98.78  E-value=8.1e-09  Score=97.45  Aligned_cols=58  Identities=21%  Similarity=0.562  Sum_probs=50.4

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ...+++|+|||+++.++||+|++||+|.|+++. +.+||.++..  |   ..|+||++||+.+.
T Consensus        42 ~~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~~~~w~~~~~~--~---~~G~~P~~yv~~~~  100 (495)
T 1opk_A           42 DPNLFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--N---GQGWVPSNYITPVN  100 (495)
T ss_dssp             --CEEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECS--S---CEEEEEGGGEEESS
T ss_pred             CCcEEEEeCCcCCCCCCCCCccCCCEEEEeecCCCCCceeeeec--C---Ccceeccccccccc
Confidence            346799999999999999999999999999986 7899999965  2   37999999999864

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=98.77  E-value=1.3e-08  Score=95.00  Aligned_cols=58  Identities=26%  Similarity=0.570  Sum_probs=50.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      ..+++|+|||.++.++||+|++||+|.|++. +++||.|+....|   ++|+||++||+.+.
T Consensus         8 ~~~~~al~~~~~~~~~el~~~~gd~~~v~~~-~~~W~~~~~~~~g---~~G~~P~~yv~~~~   65 (454)
T 1qcf_A            8 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATR---KEGYIPSNYVARVD   65 (454)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTC---CEEEEEGGGEEETT
T ss_pred             CeEEEECcccCCcCCCcCcccCCCEEEEEec-CCCCeEEEECCCC---ceEEecchhccccc
Confidence            4569999999999999999999999999998 4789999964443   48999999999864

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.73  E-value=3.1e-09  Score=93.68  Aligned_cols=58  Identities=17%  Similarity=0.371  Sum_probs=50.2

Q ss_pred             ceEEeccCCCCCCC-----ceecCCCCEEEEEEcCCCCeEEEEEcCCCC-CceeeEecCCceEE
Q psy7076         220 IATVLAPYTATSSE-----QLSLSRGQLIMIRKKTTTGWWEGELQAKGK-KRQVGWFPASYVKV  277 (290)
Q Consensus       220 ~~~a~~dy~~~~~~-----eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~-~~~~G~fP~~~v~~  277 (290)
                      +++|+|||+++.++     +|+|++||+|.|++..+++||.+++.+.+. .++.|+||++|+.+
T Consensus         3 ~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~WW~a~~~~~~~~~~~~G~iPsny~~e   66 (295)
T 1kjw_A            3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (295)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCCeEEEEECCCCCccCceeEeecHHHHH
Confidence            58999999999887     999999999999999999999999875431 23589999999965

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.71  E-value=7e-09  Score=74.33  Aligned_cols=56  Identities=27%  Similarity=0.354  Sum_probs=49.2

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+ ......+|+|.+|++|.|+....++.+||.+++ .|+.|+||.+||+.-
T Consensus        29 ~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd   85 (96)
T 2gtj_A           29 HLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEID   85 (96)
T ss_dssp             EEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEEC
T ss_pred             EEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEE
Confidence            57899999 566899999999999999877666689999998 999999999999753

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.69  E-value=3.4e-08  Score=69.76  Aligned_cols=60  Identities=17%  Similarity=0.273  Sum_probs=49.1

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCC--CCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA--EPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~--~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..|.+..+|.+...-||++++||+|-|+.+.+.  ...||++..+|+.||||++||+++...
T Consensus        18 ~LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~   79 (92)
T 1ug1_A           18 KLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             GEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCC
T ss_pred             heEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccC
Confidence            478888999998999999999999999865432  334555667999999999999988754

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.67  E-value=1.1e-08  Score=73.98  Aligned_cols=58  Identities=14%  Similarity=0.138  Sum_probs=48.2

Q ss_pred             CceEEeccC--CCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         219 EIATVLAPY--TATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       219 ~~~~a~~dy--~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..++|+++|  ......+|+|++||++.|++..+++||.++..    .|+.|++|.+||.++.+
T Consensus        40 ~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~~wwLcRNs----~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           40 YSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDDTKVLCRNE----EGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             SCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSSSEEEEEET----TTEEEEEEGGGSCC---
T ss_pred             EEEEEeeccccccCCcccCCcCCCCEEEEEEeCCCCEEEEECC----CCCCCceeHHHhccccc
Confidence            346788888  67779999999999999999999999999965    35699999999987654

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.65  E-value=4.5e-09  Score=92.66  Aligned_cols=55  Identities=20%  Similarity=0.359  Sum_probs=46.9

Q ss_pred             cEEEEeccccCCCCC-----CCccCCCCEEEEccccCCCCCeEEEeeC------CeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGD-----ELSFQPGDIIMVPVKQNAEPGWLAGELR------GQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~-----eLs~~~Gd~v~v~~~~~~~~~W~~g~~~------g~~G~~P~~yv~~~   95 (290)
                      ..++|+|||.++.++     +|+|++||+|.|+..  .+++||.+++.      |+.|+||+||++..
T Consensus         2 ~~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~--~d~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            2 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDA--GDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEEC--CSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEe--CCCCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            358999999998877     999999999999743  67899999984      37899999999644

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=98.61  E-value=4.3e-09  Score=99.17  Aligned_cols=57  Identities=28%  Similarity=0.567  Sum_probs=0.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...++|+|||.++.++||+|.+||+|.|+... +.|||.|++. +   |+.||||++||+.+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~~~Ww~g~~~-~---g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDEDEQGWCKGRLD-N---GQVGLYPANYVEAI  485 (486)
T ss_dssp             --------------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecCCCCeeEEEeC-C---CCEEEEeHHHceeC
Confidence            45689999999999999999999999999986 4599999975 2   34899999999875

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.57  E-value=3e-08  Score=96.30  Aligned_cols=62  Identities=24%  Similarity=0.337  Sum_probs=49.5

Q ss_pred             cEEEEecccc---CCCCCCCccCCCCEEEEccccC---CCCCeEEEe--eCCeeeeccCCcccCCccCCC
Q psy7076          39 RRYRAIYEFV---SRNGDELSFQPGDIIMVPVKQN---AEPGWLAGE--LRGQTGWFPESYVEPCDETGE  100 (290)
Q Consensus        39 ~~~~al~~~~---~~~~~eLs~~~Gd~v~v~~~~~---~~~~W~~g~--~~g~~G~~P~~yv~~~~~~~~  100 (290)
                      ..++|+|||.   ++.+.+|+|++||+|.|+....   .++|||.|+  ++|++|+||++||..++..+.
T Consensus       574 ~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~~  643 (655)
T 3pvl_A          574 KYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVTL  643 (655)
T ss_dssp             CEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSSC
T ss_pred             hhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCCC
Confidence            5699999999   7889999999999999963210   357999999  589999999999998876543

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.55  E-value=3.8e-07  Score=64.43  Aligned_cols=60  Identities=18%  Similarity=0.412  Sum_probs=49.8

Q ss_pred             cceEEEEcccCCCCCCCCceecCCCEEEEEee-c----CCeEEEEeCCeeEEecCCCeEecCCCC
Q psy7076         102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E----NDWWTGTIGDRTGLFPSNYVVPYEAQT  161 (290)
Q Consensus       102 ~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~----~~W~~~~~~g~~G~~P~~~v~~~~~~~  161 (290)
                      +...+.+..++.+...-||++.+||+|.|+++ |    ..||.+..+|+.||||++||+++....
T Consensus        16 ~~~LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~   80 (92)
T 1ug1_A           16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             GGGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             chheEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCC
Confidence            35578888889998888999999999999987 2    345557779999999999999997543

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.49  E-value=6.9e-08  Score=93.78  Aligned_cols=60  Identities=28%  Similarity=0.446  Sum_probs=49.7

Q ss_pred             CCceEEeccCC---CCCCCceecCCCCEEEEEEc-----CCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYT---ATSSEQLSLSRGQLIMIRKK-----TTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~---~~~~~eLs~~~Gd~i~v~~~-----~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.   ++.+.+|+|++||+|.|++.     .++|||.|++..+|   +.|+||++||..+..
T Consensus       573 s~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g---~~G~fP~~~V~~lpt  640 (655)
T 3pvl_A          573 SKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTK---QRGDFPTDCVYVMPT  640 (655)
T ss_dssp             CCEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTC---CEEEEEGGGEEECCC
T ss_pred             chhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCC---ceEEeEhhhEEECCC
Confidence            57899999999   67889999999999998888     46899999976544   489999999999853

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.47  E-value=1.3e-07  Score=83.80  Aligned_cols=55  Identities=22%  Similarity=0.400  Sum_probs=46.8

Q ss_pred             CCCccEEEEeccccCCCCCC-------CccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCc
Q psy7076          35 VSEYRRYRAIYEFVSRNGDE-------LSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESY   91 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~e-------Ls~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~y   91 (290)
                      ++....++|+|||.+...++       |+|++||++.|+..  .+.+||.++.   +|..|+||+++
T Consensus        35 k~~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~--~d~~WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           35 KPVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEK--FNNDWWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             SCCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEE--CSSSEEEEEESSTTCCCEEEECHH
T ss_pred             CCccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEec--CCCCeEEEEECCCCCCccEecCHH
Confidence            44557899999999987665       99999999999754  6788999998   57899999987

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.39  E-value=2e-07  Score=66.83  Aligned_cols=55  Identities=20%  Similarity=0.231  Sum_probs=47.3

Q ss_pred             cceEEEEcccCCCCCCCCceecCCCEEEEEee-c--CCeEEEEe-CCeeEEecCCCeEec
Q psy7076         102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-E--NDWWTGTI-GDRTGLFPSNYVVPY  157 (290)
Q Consensus       102 ~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~--~~W~~~~~-~g~~G~~P~~~v~~~  157 (290)
                      ....+.|+++ ......+|+|.+|+++.|+.. +  .+||.+++ .|+.|++|.+||+.-
T Consensus        27 vl~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~p~g~Wl~RN~~G~~GyVp~~~v~vd   85 (96)
T 2gtj_A           27 VIHLAKACCD-VKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTTAVEID   85 (96)
T ss_dssp             CCEEEEESSC-EECTTSCCEECTTCCEEEEECTTCSSSCCEEECTTCCBCCCCGGGEEEC
T ss_pred             eEEEEEEeec-CCCCcccCCcCCCCEEEEEEccCCCCCeEEEECCCCCCCccchhhEEEE
Confidence            4567888888 455778999999999999987 3  67999999 899999999999764

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.36  E-value=4.9e-07  Score=76.56  Aligned_cols=59  Identities=19%  Similarity=0.461  Sum_probs=50.0

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCC-CCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE-PGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~-~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ....++|+|.+....+|.|++|++|.|+.....+ .+||.++.+|+.|+||.+||+.++.
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~  230 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPR  230 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC-
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCc
Confidence            4679999999999999999999999998543222 3599999999999999999998754

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.35  E-value=3.5e-07  Score=81.08  Aligned_cols=55  Identities=20%  Similarity=0.553  Sum_probs=47.2

Q ss_pred             CCceEEeccCCCCCCC-------ceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCc
Q psy7076         218 PEIATVLAPYTATSSE-------QLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY  274 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~-------eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~  274 (290)
                      ..+++|+|||++...+       +|+|++||++.|++..+++||.++....+  +..|+||+++
T Consensus        38 ~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~WWqar~~~~~--g~~GlIPS~~   99 (337)
T 4dey_A           38 AFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEG--CEIGFIPSPV   99 (337)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTT--CCCEEEECHH
T ss_pred             cEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCCeEEEEECCCC--CCccEecCHH
Confidence            4578999999998765       49999999999999999999999986432  3489999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.26  E-value=8.4e-07  Score=75.10  Aligned_cols=63  Identities=16%  Similarity=0.385  Sum_probs=49.4

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCC---eEEEEEcCCCCCceeeEecCCceEEecCCCcccc
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG---WWEGELQAKGKKRQVGWFPASYVKVMGGGGISIQ  286 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~g---W~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~~~  286 (290)
                      ....++|+|.++.+.+|.++.|++|.|+.+.+.+   ||+++..  |   +.|+||.+||+.+....+...
T Consensus       171 ~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~--~---~~G~~P~~yv~~~~~~~~~~~  236 (239)
T 1ycs_B          171 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLN--D---KEGYVPRNLLGLYPRIKPRQR  236 (239)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEET--T---EEEEEEGGGEECCC-------
T ss_pred             ceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEEC--C---cEEEeehHHeeECCcCCcccc
Confidence            4478999999999999999999999999986665   9999976  2   489999999998866555443

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.20  E-value=1.3e-06  Score=76.91  Aligned_cols=59  Identities=12%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCC---------eEEEEEcCCC-CCceeeEecCCceEE
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG---------WWEGELQAKG-KKRQVGWFPASYVKV  277 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~g---------W~~g~~~~~g-~~~~~G~fP~~~v~~  277 (290)
                      .|++|+|||+++.+.+|+|++||++.|++..++|         ||.++..+.. +.+..|++|.+|+.+
T Consensus         5 fyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            5 FYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            4678999999999999999999999999987665         9999987432 234689999998754

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.17  E-value=1.4e-06  Score=72.67  Aligned_cols=58  Identities=34%  Similarity=0.699  Sum_probs=51.4

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      ....++|+|+|.++..++|+|++||++.|+.  ..+.+||.+...|+.|++|.+|+....
T Consensus        13 ~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~--~~~~~w~~~~~~g~~gl~p~~~v~~~~   70 (222)
T 3ehr_A           13 QVKVFRALYTFEPRTPDELYIEEGDIIYITD--MSDTNWWKGTSKGRTGLIPSNYVAEQA   70 (222)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEEE--CCSSSEEEEEETTEEEEEEHHHHHHHE
T ss_pred             CceEEEEeCCcCCCCCCcccccCCCEEEEec--cccchhHhcccCCcceeechhhccccc
Confidence            3567899999999999999999999999964  367899999999999999999987553

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.10  E-value=2.1e-06  Score=78.51  Aligned_cols=60  Identities=18%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc---CCCCeEEEEEcCCC-CCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK---TTTGWWEGELQAKG-KKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~---~~~gW~~g~~~~~g-~~~~~G~fP~~~v~~  277 (290)
                      ..+++|+|||+++.+.+|+|++||++.|++.   .+.+||.++..+.+ +....|+||++|+.+
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            4568899999999999999999999999998   57899999987532 122589999999864

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.10  E-value=2.5e-06  Score=84.05  Aligned_cols=61  Identities=16%  Similarity=0.333  Sum_probs=51.6

Q ss_pred             CCCceEEeccCCCCCCCc-----eecCCCCEEEEEEcCCCCeEEEEEcCCCC-CceeeEecCCceEE
Q psy7076         217 KPEIATVLAPYTATSSEQ-----LSLSRGQLIMIRKKTTTGWWEGELQAKGK-KRQVGWFPASYVKV  277 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~e-----Ls~~~Gd~i~v~~~~~~gW~~g~~~~~g~-~~~~G~fP~~~v~~  277 (290)
                      ...+++|+|||+++.+++     |+|++||++.|++..+.+||.+++...+. .+..|+||++|+.+
T Consensus       426 ~~~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e  492 (721)
T 2xkx_A          426 RGFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE  492 (721)
T ss_pred             cceeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCCCeEEEEECCCCCccCccceeecHHHHH
Confidence            346789999999999888     99999999999999999999999875421 24579999999855

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.05  E-value=3e-06  Score=74.57  Aligned_cols=55  Identities=18%  Similarity=0.206  Sum_probs=42.1

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCC-------CCeEEEeeC------CeeeeccCCccc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE-------PGWLAGELR------GQTGWFPESYVE   93 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~-------~~W~~g~~~------g~~G~~P~~yv~   93 (290)
                      ..++|+|+|.++.+++|+|++||++.|+.....+       .|||.+..-      ++.|++|.+|+.
T Consensus         5 fyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~a   72 (308)
T 3kfv_A            5 FYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRA   72 (308)
T ss_dssp             EEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHH
T ss_pred             EEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHH
Confidence            3567999999999999999999999997432111       259999872      278999999874

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.03  E-value=3.1e-06  Score=77.35  Aligned_cols=56  Identities=20%  Similarity=0.218  Sum_probs=45.3

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEcccc-CCCCCeEEEeeC-C-----eeeeccCCcccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ-NAEPGWLAGELR-G-----QTGWFPESYVEP   94 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~-~~~~~W~~g~~~-g-----~~G~~P~~yv~~   94 (290)
                      ..++|+|+|.+..+.+|+|++||++.|+... +.+.+||.++.. .     +.|+||.+|+..
T Consensus       107 ~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          107 FYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             cccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            4577999999999999999999999996321 136789999872 2     489999999863

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.01  E-value=5.5e-06  Score=77.10  Aligned_cols=60  Identities=18%  Similarity=0.218  Sum_probs=50.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEc---CCCCeEEEEEcCCC-CCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKK---TTTGWWEGELQAKG-KKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~---~~~gW~~g~~~~~g-~~~~~G~fP~~~v~~  277 (290)
                      ..+++++|+|.+..+.+|+|++||++.|++.   .+.+||.++..+.+ +....|+||++|+.+
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            3468899999999999999999999999998   57799999987542 122589999999864

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.00  E-value=5e-06  Score=69.17  Aligned_cols=57  Identities=23%  Similarity=0.598  Sum_probs=50.7

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ...+++++|+|.++.+++|+|+.||++.|....+.+||.+...     +..|+||.+|+...
T Consensus        13 ~~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~-----g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSK-----GRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEET-----TEEEEEEHHHHHHH
T ss_pred             CceEEEEeCCcCCCCCCcccccCCCEEEEeccccchhHhcccC-----Ccceeechhhcccc
Confidence            3567899999999999999999999999999999999999976     24899999998754

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=97.96  E-value=6.8e-06  Score=80.96  Aligned_cols=55  Identities=20%  Similarity=0.355  Sum_probs=46.2

Q ss_pred             cEEEEeccccCCCCCC-----CccCCCCEEEEccccCCCCCeEEEeeC------CeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDE-----LSFQPGDIIMVPVKQNAEPGWLAGELR------GQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~e-----Ls~~~Gd~v~v~~~~~~~~~W~~g~~~------g~~G~~P~~yv~~~   95 (290)
                      ..++|+|+|.+..+++     |+|++||++.|+..  .+.+||.+++.      ++.|+||.+|+...
T Consensus       428 ~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~--~~~~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          428 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDA--GDEEWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             eeEEEeeccCcCCCCCCccccccccCCCEEEEeec--CCCCeEEEEECCCCCccCccceeecHHHHHH
Confidence            4568999999999888     99999999999643  57899999873      45699999998643

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=97.92  E-value=8e-06  Score=76.01  Aligned_cols=56  Identities=20%  Similarity=0.233  Sum_probs=45.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEcccc-CCCCCeEEEee---CC---eeeeccCCcccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ-NAEPGWLAGEL---RG---QTGWFPESYVEP   94 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~-~~~~~W~~g~~---~g---~~G~~P~~yv~~   94 (290)
                      ..++|+|+|.+..+.+|+|++||++.|+... +.+.+||.+..   ++   +.|+||.+|+..
T Consensus        99 ~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           99 FYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             cccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            4678999999999999999999999996421 13568999987   33   689999999853

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.88  E-value=1.1e-05  Score=70.76  Aligned_cols=58  Identities=16%  Similarity=0.430  Sum_probs=40.8

Q ss_pred             CCceEEeccCCCCCCC-----ceecCCCCEEEEEEcCCCCeEEEEEcCC-CCCceeeEecCCce
Q psy7076         218 PEIATVLAPYTATSSE-----QLSLSRGQLIMIRKKTTTGWWEGELQAK-GKKRQVGWFPASYV  275 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~-----eLs~~~Gd~i~v~~~~~~gW~~g~~~~~-g~~~~~G~fP~~~v  275 (290)
                      ..|++|+|||++..++     +|+|++||++.|++..+++||.++.... +.....|++|+...
T Consensus         5 s~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~   68 (292)
T 3tvt_A            5 SLYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDEWWQARRVLGDNEDEQIGIVPSKRR   68 (292)
T ss_dssp             CCEEEECSCBCC---------CCCBCTTCEEEEEECCSSSEEEECCCCC--------EEECHHH
T ss_pred             eEEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCCeEEEEEeCCCCCccceeEEeChHH
Confidence            4679999999988655     6999999999999999999999987532 22335799998643

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.82  E-value=1.7e-05  Score=69.33  Aligned_cols=57  Identities=14%  Similarity=0.089  Sum_probs=44.9

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      +...++|+|||.+.   ++++.+||++.++.  +.+..||.++. +|..|+||++|+...++.
T Consensus       197 ~~~~v~al~dy~~~---e~~~~kge~~~l~~--~s~~~wW~v~~~~G~~g~vPs~~~~ip~p~  254 (283)
T 3pe0_A          197 GRLPLLAVCDYKQV---EVTVHKGDECQLVG--PAQPSHWKVLSSSGSEAAVPSVCFLVPPPN  254 (283)
T ss_dssp             SCEEEEECSCEECS---SCEECTTCEEEEEE--ECSTTEEEEECC---EEEEEGGGEECCSCC
T ss_pred             CCceEEeecCccCC---cccccCCCEEEEee--CCCCCceEEEcCCCCEeeccceEEeeCCCC
Confidence            34689999999774   79999999999964  35667999997 899999999999876654

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=97.72  E-value=2.9e-05  Score=68.03  Aligned_cols=53  Identities=25%  Similarity=0.456  Sum_probs=37.4

Q ss_pred             cEEEEeccccCCCCC-----CCccCCCCEEEEccccCCCCCeEEEee------CCeeeeccCCccc
Q psy7076          39 RRYRAIYEFVSRNGD-----ELSFQPGDIIMVPVKQNAEPGWLAGEL------RGQTGWFPESYVE   93 (290)
Q Consensus        39 ~~~~al~~~~~~~~~-----eLs~~~Gd~v~v~~~~~~~~~W~~g~~------~g~~G~~P~~yv~   93 (290)
                      ..++|+|||.+..++     .|+|++|||+.|.  ++.+++||.++.      .++.|++|+....
T Consensus         6 ~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~--~~~d~~wWqA~~v~~~~~~~~~GlIPS~~~~   69 (292)
T 3tvt_A            6 LYVRALFDYDPNRDDGLPSRGLPFKHGDILHVT--NASDDEWWQARRVLGDNEDEQIGIVPSKRRW   69 (292)
T ss_dssp             CEEEECSCBCC---------CCCBCTTCEEEEE--ECCSSSEEEECCCCC--------EEECHHHH
T ss_pred             EEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEe--ecCCCCeEEEEEeCCCCCccceeEEeChHHH
Confidence            578999999998665     5999999999995  457889999985      2347999996543

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=97.61  E-value=8.3e-05  Score=64.86  Aligned_cols=56  Identities=9%  Similarity=0.102  Sum_probs=46.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      +..++|+|||.+.   ++++.+|+.+.+++..+..||.++..    .|.+|++|++|+.....
T Consensus       198 ~~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~wW~v~~~----~G~~g~vPs~~~~ip~p  253 (283)
T 3pe0_A          198 RLPLLAVCDYKQV---EVTVHKGDECQLVGPAQPSHWKVLSS----SGSEAAVPSVCFLVPPP  253 (283)
T ss_dssp             CEEEEECSCEECS---SCEECTTCEEEEEEECSTTEEEEECC-------EEEEEGGGEECCSC
T ss_pred             CceEEeecCccCC---cccccCCCEEEEeeCCCCCceEEEcC----CCCEeeccceEEeeCCC
Confidence            4569999999875   79999999999999988899999943    35689999999988543

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=97.32  E-value=0.00071  Score=59.58  Aligned_cols=99  Identities=12%  Similarity=0.170  Sum_probs=69.4

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccCCCc---cceEEEEccc----CC---CCCCCCceecC
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETGEV---VPEYYIAAYP----YD---STEPGDLTFNQ  124 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~~~~---~~~~~~a~~~----y~---~~~~~eL~~~~  124 (290)
                      .+..|+.|.|++.    ++|++++. +|..||++..+|.........   .....++..+    +.   ....--..+..
T Consensus        36 ~l~~G~~v~Vl~~----~gW~~V~~~dG~~GwV~~~~l~~~~~~~~~~~~~~~~~vvt~~~~~vr~~p~~~~~~~~~l~~  111 (306)
T 3npf_A           36 QALLGMPVKVLQY----NGWYEIQTPDDYTGWVHRMVITPMSKERYDEWNRAEKIVVTSHYGFAYEKPDESSQPVSDVVA  111 (306)
T ss_dssp             EEETTCEEEEEEE----SSEEEEECTTSCEEEEEGGGEEEECHHHHHHHHHSCEEEECSSEEEEESSSSTTSCEEEEEET
T ss_pred             EEcCCCEEEEEEE----CCEEEEEcCCCCEEEEEhHHeeecChhhhhhhccCCcEEEeecceeEEeCCCCCCceEEEEcC
Confidence            5678999999753    36999998 899999999999765431000   0011111111    11   11122357889


Q ss_pred             CCEEEEEeecCCeEEEEe-CCeeEEecCCCeEecC
Q psy7076         125 DEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYE  158 (290)
Q Consensus       125 G~~v~v~~~~~~W~~~~~-~g~~G~~P~~~v~~~~  158 (290)
                      |..+.|+...++|+..+. +|+.||++..++..+.
T Consensus       112 Gt~v~v~~~~~~W~kV~~pdG~~GyV~~~~l~~~~  146 (306)
T 3npf_A          112 GNRLKWEGSKGHFYQVSYPDGRKAYLSKSISQPEA  146 (306)
T ss_dssp             TCEEEEEEEETTEEEEECTTSCEEEEETTSEEEHH
T ss_pred             CCEEEEEeecCCEEEEEcCCCCeEEEEeeccceee
Confidence            999999988889999998 8999999999998765

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.19  E-value=0.00027  Score=65.51  Aligned_cols=56  Identities=16%  Similarity=0.068  Sum_probs=47.4

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|||||..   .++++.+||+++++  ++.+..||.++. +|..|+||+.|+...++.
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~--~ns~~~~W~V~~~~G~~~~vPavcf~ipppd  339 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILK--DNNERSKWYVTGPGGVDMLVPSVGLIIPPPN  339 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEE--ECSSSSEEEEECSSSCCEEEEGGGEECCSCC
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEe--cCCCCCceEEecCCCCeeccceeEEecCCCC
Confidence            467999999984   78999999999984  456778999987 789999999999876554

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=96.88  E-value=0.0039  Score=54.96  Aligned_cols=99  Identities=14%  Similarity=0.230  Sum_probs=67.8

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEee---------CCeeeeccCCcccCCccCCC-ccceEEEE------ccc-CCCCCCC
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGEL---------RGQTGWFPESYVEPCDETGE-VVPEYYIA------AYP-YDSTEPG  118 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~~---------~g~~G~~P~~yv~~~~~~~~-~~~~~~~a------~~~-y~~~~~~  118 (290)
                      .+..|+.|.|++.   +.+|.+++.         +|-.||++..+|...+.... ......++      ++. .+.... 
T Consensus        63 qll~Ge~V~Vl~~---~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~~~~~~~~~~~~~~~~Vt~~~~~l~~~p~~~~~-  138 (311)
T 3h41_A           63 QALLGQEVTVVDK---KGDWVKVLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADKTNEPFVLVTKPTAILYINPSEKHK-  138 (311)
T ss_dssp             EEETTCEEEEEEE---ETTEEEEEETTCCBTTBSSCEEEEEEGGGEECCHHHHHTTTSCEEEECSSEEEEEESSCTTCC-
T ss_pred             eecCCCEEEEEEe---eCCEEEEEECCcccccCCCCcEEEEEHHHcCccccccccccCCeEEEEeCceEEeccCCCCCc-
Confidence            3455999999753   578999985         88999999999875211000 00111121      221 112222 


Q ss_pred             CceecCCCEEEEEeecCCeEEEEe-CCeeEEecCCCeEecC
Q psy7076         119 DLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYE  158 (290)
Q Consensus       119 eL~~~~G~~v~v~~~~~~W~~~~~-~g~~G~~P~~~v~~~~  158 (290)
                      -..+..|.++.++...++|+.... +|+.||+...++....
T Consensus       139 ~~~l~~Gt~Lpv~~e~~~w~~V~~p~G~~G~V~~~~l~~~~  179 (311)
T 3h41_A          139 SLEVSYNTRLPLLSEDTISYRVLLPNGQKAWLRKNDGTFYR  179 (311)
T ss_dssp             EEEEETTCEEEEEEECSSEEEEECTTSCEEEEEGGGEEEES
T ss_pred             eEEEeCCCEEEEEeecCCEEEEECCCCccceeccccccccc
Confidence            278899999999988889999887 8889999999988765

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=96.58  E-value=0.0026  Score=58.93  Aligned_cols=55  Identities=15%  Similarity=0.186  Sum_probs=47.3

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~  279 (290)
                      +..+.++|||..   .++++.+||.+.++...+..||.++..    .|..|++|+.|+....
T Consensus       283 ~~~V~alcdy~~---~e~~i~kge~~~L~~ns~~~~W~V~~~----~G~~~~vPavcf~ipp  337 (450)
T 3r6n_A          283 PIILRALCDYKQ---DQKIVHKGDECILKDNNERSKWYVTGP----GGVDMLVPSVGLIIPP  337 (450)
T ss_dssp             CCEEEESSCEEE---TTEEECTTCEEEEEECSSSSEEEEECS----SSCCEEEEGGGEECCS
T ss_pred             CceEEEeccccC---CeeeEecCCEEEEecCCCCCceEEecC----CCCeeccceeEEecCC
Confidence            456899999995   699999999999999999999999854    3458999999998743

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=95.97  E-value=0.025  Score=38.49  Aligned_cols=40  Identities=13%  Similarity=0.364  Sum_probs=35.1

Q ss_pred             ceecCCCEEEEEeecCCeEEEEeCCeeEEecCCCeEecCC
Q psy7076         120 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA  159 (290)
Q Consensus       120 L~~~~G~~v~v~~~~~~W~~~~~~g~~G~~P~~~v~~~~~  159 (290)
                      -.+.+|+.+.|++..++|++.+.+|..||+...||+....
T Consensus        25 ~~l~~G~~v~v~~~~~~W~kV~~~g~~GwV~~~yl~~~~~   64 (74)
T 2krs_A           25 GTLRNNDKVEIIKEVDGWYEIRFNGKVGYASKSYITIVNE   64 (74)
T ss_dssp             EEEETTCEEEEEEEETTEEEEEETTEEEEECSSSEEESSS
T ss_pred             EEECCCCEEEEEEEeCCEEEEEECCeEEEEEhHHcCCCCC
Confidence            3678899999999888999999999999999999987653

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=95.65  E-value=0.021  Score=39.13  Aligned_cols=40  Identities=8%  Similarity=0.212  Sum_probs=35.2

Q ss_pred             ceecCCCEEEEEeecCCeEEEEeCCeeEEecCCCeEecCC
Q psy7076         120 LTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA  159 (290)
Q Consensus       120 L~~~~G~~v~v~~~~~~W~~~~~~g~~G~~P~~~v~~~~~  159 (290)
                      -.+.+|+.|.|+...++|+..+.+|..||+...||+....
T Consensus        27 ~~l~~G~~v~vl~~~~~W~kV~~~g~~GwV~~~yl~~~~~   66 (76)
T 2kt8_A           27 GSLSGNTKVTIVGEEGAFYKIEYKGSHGYVAKEYIKDIKD   66 (76)
T ss_dssp             EEECTTCEEEEEEEETTEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             EEECCCCEEEEEEEeCCEEEEEECCEEEEEEhHHhCcCCC
Confidence            3567899999999888999999999999999999987653

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=95.40  E-value=0.072  Score=35.27  Aligned_cols=57  Identities=19%  Similarity=0.320  Sum_probs=48.2

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCC-CceeeEecCCceEE
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGK-KRQVGWFPASYVKV  277 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~-~~~~G~fP~~~v~~  277 (290)
                      ..+..||.+-.++|+++..|++|.++..+..+...+-..+..+ .-.+||+|-..+-.
T Consensus        10 m~V~~dY~A~ke~eI~v~~ge~Vqila~nqqnm~Lv~~~a~~q~paaegWvPG~vLg~   67 (74)
T 1wfw_A           10 MTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAP   67 (74)
T ss_dssp             EECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCB
T ss_pred             EEEEeeeeeeccceeccccCcEEEEEEecCcceEEEEeecCCCCccccCcccccEecc
Confidence            6778999999999999999999999999988999888877643 23689999877544

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=95.00  E-value=0.013  Score=39.54  Aligned_cols=39  Identities=23%  Similarity=0.513  Sum_probs=32.7

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      .+.+|+.|.|+..   ..+|++.+.+|..||+...||.....
T Consensus        27 ~l~~G~~v~v~~~---~~~W~~V~~~G~~GwV~~~~l~~~~~   65 (70)
T 2kq8_A           27 ALPQGQKVQVISE---NSGWSKINYNGQTGYIGTRYLSKLEH   65 (70)
T ss_dssp             CCCSSSSCCCCEE---ETTEEEEEETTEEEEEETTSCSCCCS
T ss_pred             EECCCCEEEEEEe---cCCEEEEEECCEEEEEEhHHccchhh
Confidence            5788999998753   46899999999999999999987653

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=94.99  E-value=0.021  Score=38.92  Aligned_cols=40  Identities=20%  Similarity=0.483  Sum_probs=33.0

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      .+.+|+.|.|+..   ..+|++.+.+|..||+...||......
T Consensus        26 ~l~~G~~v~v~~~---~~~W~kV~~~g~~GwV~~~yl~~~~~~   65 (74)
T 2krs_A           26 TLRNNDKVEIIKE---VDGWYEIRFNGKVGYASKSYITIVNEG   65 (74)
T ss_dssp             EEETTCEEEEEEE---ETTEEEEEETTEEEEECSSSEEESSSS
T ss_pred             EECCCCEEEEEEE---eCCEEEEEECCeEEEEEhHHcCCCCCc
Confidence            5678999999753   457999999999999999999866543

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=94.75  E-value=0.011  Score=39.87  Aligned_cols=38  Identities=18%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             eecCCCEEEEEeecCCeEEEEeCCeeEEecCCCeEecC
Q psy7076         121 TFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYE  158 (290)
Q Consensus       121 ~~~~G~~v~v~~~~~~W~~~~~~g~~G~~P~~~v~~~~  158 (290)
                      .+.+|+.|.|++..++|++.+.+|..||+...|+....
T Consensus        27 ~l~~G~~v~v~~~~~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           27 ALPQGQKVQVISENSGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCSSSSCCCCEEETTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EECCCCEEEEEEecCCEEEEEECCEEEEEEhHHccchh
Confidence            46789999888888899999999999999999987654

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=94.69  E-value=0.11  Score=45.27  Aligned_cols=110  Identities=9%  Similarity=0.064  Sum_probs=68.1

Q ss_pred             ceecCCCEEEEEeecCCeEEEEe-CCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCccCCCCCCC
Q psy7076         120 LTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSG  198 (290)
Q Consensus       120 L~~~~G~~v~v~~~~~~W~~~~~-~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (290)
                      -.+..|+.|.|++++ +|++++. +|..||++..++..+.......... ..               ...          
T Consensus        35 ~~l~~G~~v~Vl~~~-gW~~V~~~dG~~GwV~~~~l~~~~~~~~~~~~~-~~---------------~~v----------   87 (306)
T 3npf_A           35 TQALLGMPVKVLQYN-GWYEIQTPDDYTGWVHRMVITPMSKERYDEWNR-AE---------------KIV----------   87 (306)
T ss_dssp             EEEETTCEEEEEEES-SEEEEECTTSCEEEEEGGGEEEECHHHHHHHHH-SC---------------EEE----------
T ss_pred             EEEcCCCEEEEEEEC-CEEEEEcCCCCEEEEEhHHeeecChhhhhhhcc-CC---------------cEE----------
Confidence            456789999999885 6999998 8999999999998754210000000 00               000          


Q ss_pred             CCCCCCcccccCCCCCCCCCCceEEeccC-CCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         199 TPDFSSFTAAQAGTPKGKKPEIATVLAPY-TATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~a~~dy-~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                                 .       ......++.- ......-..+..|..+.|++. ..+|++.+..+ |   ..||+++.++..
T Consensus        88 -----------v-------t~~~~~vr~~p~~~~~~~~~l~~Gt~v~v~~~-~~~W~kV~~pd-G---~~GyV~~~~l~~  144 (306)
T 3npf_A           88 -----------V-------TSHYGFAYEKPDESSQPVSDVVAGNRLKWEGS-KGHFYQVSYPD-G---RKAYLSKSISQP  144 (306)
T ss_dssp             -----------E-------CSSEEEEESSSSTTSCEEEEEETTCEEEEEEE-ETTEEEEECTT-S---CEEEEETTSEEE
T ss_pred             -----------E-------eecceeEEeCCCCCCceEEEEcCCCEEEEEee-cCCEEEEEcCC-C---CeEEEEeeccce
Confidence                       0       0001112211 112223467789999998876 46899988642 3   479999999987


Q ss_pred             ec
Q psy7076         278 MG  279 (290)
Q Consensus       278 ~~  279 (290)
                      +.
T Consensus       145 ~~  146 (306)
T 3npf_A          145 EA  146 (306)
T ss_dssp             HH
T ss_pred             ee
Confidence            64

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=94.51  E-value=0.024  Score=38.86  Aligned_cols=39  Identities=15%  Similarity=0.367  Sum_probs=32.6

Q ss_pred             ccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          56 SFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        56 s~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      .+.+|+.|.|+..   ..+|++.+.+|..||+...||.....
T Consensus        28 ~l~~G~~v~vl~~---~~~W~kV~~~g~~GwV~~~yl~~~~~   66 (76)
T 2kt8_A           28 SLSGNTKVTIVGE---EGAFYKIEYKGSHGYVAKEYIKDIKD   66 (76)
T ss_dssp             EECTTCEEEEEEE---ETTEEEEEETTEEEEEEGGGEEEEEC
T ss_pred             EECCCCEEEEEEE---eCCEEEEEECCEEEEEEhHHhCcCCC
Confidence            5678999999753   46799999999999999999986544

>3h41_A NLP/P60 family protein; NLPC/P60 family protein, structural genomics, joint center F structural genomics, JCSG; HET: DGL PG4; 1.79A {Bacillus cereus atcc 10987}

Probab=93.36  E-value=0.9  Score=39.67  Aligned_cols=109  Identities=12%  Similarity=0.103  Sum_probs=67.6

Q ss_pred             ceecCCCEEEEEeecCCeEEEEe---------CCeeEEecCCCeEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCc
Q psy7076         120 LTFNQDEVIYVTKKENDWWTGTI---------GDRTGLFPSNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSS  190 (290)
Q Consensus       120 L~~~~G~~v~v~~~~~~W~~~~~---------~g~~G~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (290)
                      -.+..|+.|.|++++++|..++.         +|-.||++..+|.........   ...                     
T Consensus        62 tqll~Ge~V~Vl~~~~~W~~V~~~~q~~~~~~dGy~GWV~~~~L~~~~~~~~~---~~~---------------------  117 (311)
T 3h41_A           62 TQALLGQEVTVVDKKGDWVKVLVHGQPTPRNEEGYPGWMPEKQLTYNQEFADK---TNE---------------------  117 (311)
T ss_dssp             EEEETTCEEEEEEEETTEEEEEETTCCBTTBSSCEEEEEEGGGEECCHHHHHT---TTS---------------------
T ss_pred             eeecCCCEEEEEEeeCCEEEEEECCcccccCCCCcEEEEEHHHcCcccccccc---ccC---------------------
Confidence            34556999999999899999985         788999999888642110000   000                     


Q ss_pred             cCCCCCCCCCCCCCcccccCCCCCCCCCCceEEecc-CCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeE
Q psy7076         191 VSGGSRSGTPDFSSFTAAQAGTPKGKKPEIATVLAP-YTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGW  269 (290)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d-y~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~  269 (290)
                            +      .. .  ..      .. ...+|. -...... ..+..|.++.|++. ..+|+......    |+.||
T Consensus       118 ------~------~~-~--Vt------~~-~~~l~~~p~~~~~~-~~l~~Gt~Lpv~~e-~~~w~~V~~p~----G~~G~  169 (311)
T 3h41_A          118 ------P------FV-L--VT------KP-TAILYINPSEKHKS-LEVSYNTRLPLLSE-DTISYRVLLPN----GQKAW  169 (311)
T ss_dssp             ------C------EE-E--EC------SS-EEEEEESSCTTCCE-EEEETTCEEEEEEE-CSSEEEEECTT----SCEEE
T ss_pred             ------C------eE-E--EE------eC-ceEEeccCCCCCce-EEEeCCCEEEEEee-cCCEEEEECCC----Cccce
Confidence                  0      00 0  00      00 112331 1222233 88899999999887 46899887542    34799


Q ss_pred             ecCCceEEecC
Q psy7076         270 FPASYVKVMGG  280 (290)
Q Consensus       270 fP~~~v~~~~~  280 (290)
                      +...++.....
T Consensus       170 V~~~~l~~~~~  180 (311)
T 3h41_A          170 LRKNDGTFYRS  180 (311)
T ss_dssp             EEGGGEEEESC
T ss_pred             ecccccccccc
Confidence            99999987653

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=92.58  E-value=0.48  Score=31.35  Aligned_cols=55  Identities=16%  Similarity=0.347  Sum_probs=41.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee------CCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL------RGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~------~g~~G~~P~~yv~~~   95 (290)
                      ..+.+..||.+..++|++...|++|.|+..  ..-+...+-.      --..||+|-.-+-..
T Consensus         8 s~m~V~~dY~A~ke~eI~v~~ge~Vqila~--nqqnm~Lv~~~a~~q~paaegWvPG~vLg~~   68 (74)
T 1wfw_A            8 STMTVIKDYYALKENEICVSQGEVVQVLAV--NQQNMCLVYQPASDHSPAAEGWVPGSILAPF   68 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEE--CTTSEEEEEECSCSSSSSEEEEEEGGGCCBC
T ss_pred             ccEEEEeeeeeeccceeccccCcEEEEEEe--cCcceEEEEeecCCCCccccCcccccEeccc
Confidence            457779999999999999999999999744  4455655543      245799998765543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	290
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-18
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-14
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-10
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	3e-18
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	4e-14
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	8e-12
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	7e-18
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	5e-16
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	2e-11
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	8e-18
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	6e-13
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	4e-10
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-17
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-17
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-09
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	2e-17
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-14
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	3e-09
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	3e-17
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	7e-13
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	1e-09
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	4e-17
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	2e-14
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	2e-12
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-17
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-12
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-06
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	1e-16
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	2e-13
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	5e-11
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	3e-16
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	3e-13
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	3e-10
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	4e-16
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	5e-10
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	1e-08
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	5e-16
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-15
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-11
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	6e-16
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	6e-13
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-11
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	6e-16
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	2e-12
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	3e-10
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	7e-16
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	3e-15
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	2e-12
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	8e-16
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	2e-13
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	2e-10
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	1e-15
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	1e-13
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	4e-09
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-15
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	2e-15
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	9e-11
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	2e-15
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	4e-12
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	2e-07
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	2e-15
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	3e-12
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	3e-09
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	3e-15
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	2e-13
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	1e-10
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	4e-15
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	3e-13
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	2e-10
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	7e-15
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-13
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-09
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	1e-14
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-14
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	2e-11
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	2e-14
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	5e-12
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	5e-11
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	3e-14
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	4e-13
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	2e-09
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-14
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	6e-12
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	9e-10
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	6e-14
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-12
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-11
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	1e-13
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-10
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	9e-10
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	2e-13
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	4e-12
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	6e-10
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	4e-13
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	3e-12
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	3e-08
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	5e-13
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-12
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	7e-12
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	6e-13
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	2e-08
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	3e-08
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	6e-13
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	7e-13
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	5e-09
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	6e-13
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	4e-10
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	1e-09
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	1e-12
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	2e-10
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	2e-08
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-12
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	1e-07
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-07
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	3e-12
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	6e-11
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	3e-07
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	4e-12
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	1e-09
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	4e-09
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	1e-10
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	4e-09
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	5e-09
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	3e-10
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	2e-06
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	4e-05
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	4e-09
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	1e-08
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	7e-06
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	6e-09
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	5e-07
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	2e-06
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-08
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-07
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	0.001
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	4e-07
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	2e-05
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	0.001
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	2e-06
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	9e-06
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	1e-04
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	2e-04

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.9 bits (189), Expect = 1e-18
 Identities = 31/81 (38%), Positives = 43/81 (53%), Gaps = 7/81 (8%)

Query: 81  RGQTGWFPESYVEPCDETGEVVP------EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE 134
            GQ GWFP S+V+    + E            IA Y Y +    +L+F++ ++I V  K+
Sbjct: 6   SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKD 65

Query: 135 ND-WWTGTIGDRTGLFPSNYV 154
           +  WW G I   TGLFPSNYV
Sbjct: 66  DPDWWQGEINGVTGLFPSNYV 86

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 5e-14
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGW 86
          ++           +  A+Y++ + N DELSF  G +I V  K +  P W  GE+ G TG 
Sbjct: 23 SSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDD--PDWWQGEINGVTGL 80

Query: 87 FPESYVEPCDET 98
          FP +YV+   ++
Sbjct: 81 FPSNYVKMTTDS 92

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 2e-10
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 5/72 (6%)

Query: 207 AAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQ 266
           +++  TP          +  Y A + ++LS S+GQLI +  K    WW+GE+        
Sbjct: 23  SSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEI-----NGV 77

Query: 267 VGWFPASYVKVM 278
            G FP++YVK+ 
Sbjct: 78  TGLFPSNYVKMT 89

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (184), Expect = 3e-18
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          + +  +  A++ + +   ++L FQ GDII+V  K      WL GE +G+ G FP+ +VE 
Sbjct: 2  LKKGSQVEALFSYEATQPEDLEFQEGDIILVLSKV--NEEWLEGESKGKVGIFPKVFVED 59

Query: 95 C 95
           
Sbjct: 60 S 60

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (155), Expect = 4e-14
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 156
               A + Y++T+P DL F + ++I V  K N+ W  G    + G+FP  +V  
Sbjct: 6   SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESKGKVGIFPKVFVED 59

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (139), Expect = 8e-12
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 5/61 (8%)

Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV 275
           KK      L  Y AT  E L    G +I++  K    W EGE      K +VG FP  +V
Sbjct: 3   KKGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGES-----KGKVGIFPKVFV 57

Query: 276 K 276
           +
Sbjct: 58  E 58

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 73.6 bits (181), Expect = 7e-18
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
          E +  +A+++F  +   EL+F+ GD+I +  K   +P W  G+L  + G FP +YV P +
Sbjct: 1  ETKFVQALFDFNPQESGELAFKRGDVITLINKD--DPNWWEGQLNNRRGIFPSNYVCPYN 58

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 68.5 bits (168), Expect = 5e-16
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPY 157
           +  A + ++  E G+L F + +VI +  K++  WW G + +R G+FPSNYV PY
Sbjct: 4   FVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLNNRRGIFPSNYVCPY 57

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           + +    L  +    S +L+  RG +I +  K    WWEG+L       + G FP++YV 
Sbjct: 1   ETKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQL-----NNRRGIFPSNYVC 55

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (181), Expect = 8e-18
 Identities = 17/63 (26%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          SE ++  A+Y+++  N ++L  + GD   + ++++  P W A +  GQ G+ P +YV   
Sbjct: 6  SELKKVVALYDYMPMNANDLQLRKGDEYFI-LEESNLPWWRARDKNGQEGYIPSNYVTEA 64

Query: 96 DET 98
          +++
Sbjct: 65 EDS 67

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 158
           +  +A Y Y      DL   + +  ++ ++ N  WW     + + G  PSNYV   E
Sbjct: 9   KKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDKNGQEGYIPSNYVTEAE 65

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 4e-10
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 4/68 (5%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+    + +    L  Y   ++  L L +G    I +++   WW        K  Q G+ 
Sbjct: 1   GSMSTSELKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARD----KNGQEGYI 56

Query: 271 PASYVKVM 278
           P++YV   
Sbjct: 57  PSNYVTEA 64

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.5 bits (178), Expect = 2e-17
 Identities = 37/62 (59%), Positives = 47/62 (75%)

Query: 98  TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPY 157
           +G    E YIA YPY S EPGDLTF + E I VT+K+ +WWTG+IGDR+G+FPSNYV P 
Sbjct: 3   SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPK 62

Query: 158 EA 159
           ++
Sbjct: 63  DS 64

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (176), Expect = 6e-17
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 33 TGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYV 92
          +G S    Y A+Y + S    +L+F  G+ I+V  K   +  W  G +  ++G FP +YV
Sbjct: 3  SGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK---DGEWWTGSIGDRSGIFPSNYV 59

Query: 93 EPCD 96
          +P D
Sbjct: 60 KPKD 63

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (124), Expect = 1e-09
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+      E    L PY++     L+ + G+ I++ +K    WW G +       + G F
Sbjct: 1   GSSGSSGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-DGEWWTGSI-----GDRSGIF 54

Query: 271 PASYVKVMGGGGIS 284
           P++YVK    G  S
Sbjct: 55  PSNYVKPKDSGPSS 68

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.1 bits (177), Expect = 2e-17
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
          + A+Y+FV+   + LS   G+ + V    +    W   + +   GW P +Y+ P +
Sbjct: 3  FVALYDFVASGDNTLSITKGEKLRVLGYNHNG-EWCEAQTKNGQGWVPSNYITPVN 57

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.8 bits (158), Expect = 1e-14
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN--DWWTGTIGDRTGLFPSNYVVP 156
            ++A Y + ++    L+  + E + V    +  +W      +  G  PSNY+ P
Sbjct: 2   LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTKNGQGWVPSNYITP 55

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (120), Expect = 3e-09
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 6/57 (10%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTT-GWWEGELQAKGKKRQVGWFPASYVKVM 278
            L  + A+    LS+++G+ + +        W E +      K   GW P++Y+  +
Sbjct: 5   ALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQT-----KNGQGWVPSNYITPV 56

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (177), Expect = 3e-17
 Identities = 18/54 (33%), Positives = 30/54 (55%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          +  A+Y F      +L F+ GD+I +  K +++  W  G + G+ G FP +YVE
Sbjct: 3  KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVE 56

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (146), Expect = 7e-13
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYV 154
             +A Y +   E GDL F + +VI + KK +    WWTG +  R G+FP+NYV
Sbjct: 3   KAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYV 55

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 7/60 (11%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTT--GWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  L  +    S  L   +G +I I KK+ +   WW G +       + G FPA+YV+++
Sbjct: 4   AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN-----GREGIFPANYVELV 58

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.7 bits (176), Expect = 4e-17
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          R  RA+Y+F +   DEL F+ G+++ V    N  P W  G L  + G FP +YV P 
Sbjct: 2  RWARALYDFEALEEDELGFRSGEVVEVLDSSN--PSWWTGRLHNKLGLFPANYVAPM 56

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 1/53 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVP 156
           +  A Y +++ E  +L F   EV+ V       WWTG + ++ GLFP+NYV P
Sbjct: 3   WARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLHNKLGLFPANYVAP 55

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           A  L  + A   ++L    G+++ +   +   WW G L       ++G FPA+YV  M
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRL-----HNKLGLFPANYVAPM 56

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (176), Expect = 8e-17
 Identities = 33/70 (47%), Positives = 39/70 (55%)

Query: 34  GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           G S    YRA+Y F +RN DE+SF  GDII V  K   EPGWL G  +G  GWFP +YVE
Sbjct: 1   GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

Query: 94  PCDETGEVVP 103
               +     
Sbjct: 61  KMPSSENEKA 70

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 2e-12
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 99  GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGDRTGLFPSNYVV 155
           G      Y A YP+++    +++FN  ++I V +K      W  G+     G FP NYV 
Sbjct: 1   GSSGSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVE 60

Query: 156 PYEAQTPAAAVDP----TPATPVVKDTPTKSEG 184
              +     AV P     P T  +  T   S G
Sbjct: 61  KMPSSENEKAVSPKKALLPPTVSLSATSGPSSG 93

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYVKVM 278
            L P+ A + +++S + G +I + +KT    GW  G  Q        GWFP +YV+ M
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQ-----GNFGWFPCNYVEKM 62

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (173), Expect = 1e-16
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
          RR RA+Y+F +   +EL+F+ G++I V      +  W  GE    TG FP ++V 
Sbjct: 3  RRVRALYDFEAVEDNELTFKHGELITVLDDS--DANWWQGENHRGTGLFPSNFVT 55

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.2 bits (149), Expect = 2e-13
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
            A Y +++ E  +LTF   E+I V    +  WW G     TGLFPSN+V
Sbjct: 6   RALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENHRGTGLFPSNFV 54

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (133), Expect = 5e-11
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 5/56 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
              L  + A    +L+   G+LI +   +   WW+GE       R  G FP+++V 
Sbjct: 5   VRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGEN-----HRGTGLFPSNFVT 55

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (170), Expect = 3e-16
 Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           A Y+F +   DELSF+ GDI+ V + +  +  W   EL G+ G+ P++Y+E
Sbjct: 4  IAKYDFKATADDELSFKRGDILKV-LNEECDQNWYKAELNGKDGFIPKNYIE 54

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (149), Expect = 3e-13
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGDRTGLFPSNYV 154
           IA Y + +T   +L+F + +++ V  +E D  W+   +  + G  P NY+
Sbjct: 4   IAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELNGKDGFIPKNYI 53

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (127), Expect = 3e-10
 Identities = 13/58 (22%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           A     + AT+ ++LS  RG ++ ++ ++    W++ EL       + G+ P +Y+++
Sbjct: 3   AIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAEL-----NGKDGFIPKNYIEM 55

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 4e-16
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
          + +R+ +A+Y   + +  ELSF  G +           GWL G L G+TG  PE+YVE  
Sbjct: 8  TPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEP-GWLEGTLNGKTGLIPENYVEFL 66

Query: 96 DE 97
            
Sbjct: 67 SG 68

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (126), Expect = 5e-10
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 2/53 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN--DWWTGTIGDRTGLFPSNYV 154
               A Y   +    +L+F    V           W  GT+  +TGL P NYV
Sbjct: 11  RKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGKTGLIPENYV 63

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 1e-08
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 6/69 (8%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFP 271
             G     A  L    A    +LS + G +      +   GW EG L  K      G  P
Sbjct: 5   SSGTPFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLNGK-----TGLIP 59

Query: 272 ASYVKVMGG 280
            +YV+ + G
Sbjct: 60  ENYVEFLSG 68

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (168), Expect = 5e-16
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +A+++F  +   EL F+ GD I V      +P W  G   GQTG FP +YV P
Sbjct: 5  QALFDFDPQEDGELGFRRGDFIHVMDNS--DPNWWKGACHGQTGMFPRNYVTP 55

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (162), Expect = 4e-15
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVP 156
           Y  A + +D  E G+L F + + I+V    +  WW G    +TG+FP NYV P
Sbjct: 3   YVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACHGQTGMFPRNYVTP 55

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 14/56 (25%), Positives = 20/56 (35%), Gaps = 5/56 (8%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
              L  +      +L   RG  I +   +   WW+G         Q G FP +YV 
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGAC-----HGQTGMFPRNYVT 54

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (169), Expect = 6e-16
 Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 2/68 (2%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           S     +A + F   N DELS   GDII V   +    GW  G L G+TGWFP +YV   
Sbjct: 8   SHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEE--GGWWEGTLNGRTGWFPSNYVREI 65

Query: 96  DETGEVVP 103
             +    P
Sbjct: 66  KSSERSGP 73

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNYVVPYEAQT 161
                A + +  T   +L+  + ++IYVT+  E  WW GT+  RTG FPSNYV   ++  
Sbjct: 10  QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGRTGWFPSNYVREIKSSE 69

Query: 162 PAA 164
            + 
Sbjct: 70  RSG 72

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (138), Expect = 1e-11
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 5/64 (7%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G    I      +  T+ ++LS+ +G +I + +    GWWEG L  +      GWFP++Y
Sbjct: 7   GSHQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLNGR-----TGWFPSNY 61

Query: 275 VKVM 278
           V+ +
Sbjct: 62  VREI 65

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 6e-16
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 34 GVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGW-LAGELRGQTGWFPESYV 92
          G       + +Y F S   +EL+F+ G+ + V  K   +P W      RGQ G  P++YV
Sbjct: 2  GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61

Query: 93 EPCDET 98
              + 
Sbjct: 62 VVLSDG 67

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 2e-12
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 99  GEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND---WWTGTIGD-RTGLFPSNYV 154
           G  V       YP+ S    +L F + E + V +K  +   WW       + GL P NYV
Sbjct: 2   GSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV 61

Query: 155 VPYE 158
           V   
Sbjct: 62  VVLS 65

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 3e-10
 Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 216 KKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPAS 273
           +   +   L P+++ + E+L+  +G+ + + +K      WW+ +      + QVG  P +
Sbjct: 4   RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKN----ARGQVGLVPKN 59

Query: 274 YVKVM 278
           YV V+
Sbjct: 60  YVVVL 64

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 68.2 bits (167), Expect = 7e-16
 Identities = 13/54 (24%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
            A+Y++  ++  E++ + GDI+ +    N    W   E+  + G+ P +YV+ 
Sbjct: 3  VLALYDYQEKSPREVTMKKGDILTLLNSTN--KDWWKVEVNDRQGFVPAAYVKK 54

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 66.6 bits (163), Expect = 3e-15
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           E  +A Y Y    P ++T  + +++ +    N  WW   + DR G  P+ YV
Sbjct: 1   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVNDRQGFVPAAYV 52

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 58.9 bits (143), Expect = 2e-12
 Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           E+   L  Y   S  ++++ +G ++ +   T   WW+ E+       + G+ PA+YVK +
Sbjct: 1   ELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV-----NDRQGFVPAAYVKKL 55

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (167), Expect = 8e-16
 Identities = 14/54 (25%), Positives = 26/54 (48%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          + A+Y++ +   D+LSF  G+   +      +         G+TG+ P +YV P
Sbjct: 3  FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.3 bits (149), Expect = 2e-13
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 3/54 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW---TGTIGDRTGLFPSNYVVP 156
           ++A Y Y++    DL+F++ E   +       W          TG  PSNYV P
Sbjct: 3   FVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGETGYIPSNYVAP 56

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (128), Expect = 2e-10
 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
            L  Y A + + LS  +G+   I   +   WWE      G+    G+ P++YV  +
Sbjct: 5   ALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTTGE---TGYIPSNYVAPV 57

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (165), Expect = 1e-15
 Identities = 12/61 (19%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNA-EPGWLAGELRGQTGWFPESYVE 93
          +       A++++  +N DEL  + GD + +  +++  E  W    L  + G+ P + + 
Sbjct: 1  IMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

Query: 94 P 94
           
Sbjct: 61 L 61

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (152), Expect = 1e-13
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYVVPY 157
             A + Y+     +L   + + + +  +E++    WW   + D+ G  P N +  Y
Sbjct: 7   IYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLY 62

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 4e-09
 Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 8/61 (13%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTT---TGWWEGELQAKGKKRQVGWFPASYVK 276
           +   L  Y   + ++L +  G  + I  +       WW   L  K      G+ P + + 
Sbjct: 6   VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK-----EGYVPRNLLG 60

Query: 277 V 277
           +
Sbjct: 61  L 61

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 29 STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFP 88
          + DP        Y AI  + +  GDE+S   G+ + V  K     GW        TG+FP
Sbjct: 5  TEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLL--DGWWVIRKDDVTGYFP 62

Query: 89 ESYVEPCDET 98
            Y++   + 
Sbjct: 63 SMYLQKSGQD 72

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (169), Expect = 2e-15
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 1/98 (1%)

Query: 93  EPCDETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPS 151
           E  D       E Y+A   Y + E  +++  + E + V  K  D WW     D TG FPS
Sbjct: 4   ETEDPEPNYAGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPS 63

Query: 152 NYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTS 189
            Y+         A        P  + +   +  + + S
Sbjct: 64  MYLQKSGQDVSQAQRQIKRGAPPRRSSIRNAHSIHQRS 101

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 9e-11
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           E    +  YTA   +++SL  G+ + +  K   GWW        K    G+FP+ Y++  
Sbjct: 15  EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIR-----KDDVTGYFPSMYLQKS 69

Query: 279 G 279
           G
Sbjct: 70  G 70

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.0 bits (166), Expect = 2e-15
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 27 TASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMV--PVKQNAEPGWLAGELRGQT 84
          ++ +  +     + Y A+Y F +RN +ELS      + +           W   E+ G+ 
Sbjct: 2  SSGSSGSEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKK 61

Query: 85 GWFPESYVEPCD 96
          G+ P +Y+   +
Sbjct: 62 GYVPSNYIRKTE 73

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 13/61 (21%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-----ENDWWTGTIGDRTGLFPSNYVVPYE 158
           + Y A Y + +  P +L+ + ++ + + +        +WW   +  + G  PSNY+   E
Sbjct: 14  QVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTE 73

Query: 159 A 159
           +
Sbjct: 74  S 74

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 213 PKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKT----TTGWWEGELQAKGKKRQVG 268
            + +  ++   +  + A +  +LS+S  Q + I +       T WW  E+       + G
Sbjct: 8   SEAEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN-----GKKG 62

Query: 269 WFPASYVKVMGGGGIS 284
           + P++Y++    G  S
Sbjct: 63  YVPSNYIRKTESGPSS 78

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 2e-15
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
           YRAI ++   +G E++   GD++ V  K   E GW   +++ + GW P S++EP D
Sbjct: 4  TYRAIADYEKTSGSEMALSTGDVVEVVEKS--ESGWWFCQMKAKRGWIPASFLEPLD 58

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 3e-12
 Identities = 12/56 (21%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYVVPYE 158
           + Y A   Y+ T   ++  +  +V+ V +K    WW   +  + G  P++++ P +
Sbjct: 3   QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMKAKRGWIPASFLEPLD 58

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 16/60 (26%), Positives = 35/60 (58%), Gaps = 5/60 (8%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           +    +A Y  TS  +++LS G ++ + +K+ +GWW  +++      + GW PAS+++ +
Sbjct: 3   QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK-----AKRGWIPASFLEPL 57

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (163), Expect = 3e-15
 Identities = 17/57 (29%), Positives = 29/57 (50%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
          + A+Y++ SR   +LSF+ G+ + +      +         GQTG+ P +YV P D 
Sbjct: 5  FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSDS 61

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 2e-13
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD--RTGLFPSNYVVPYE 158
           ++A Y Y+S    DL+F + E + +       WW        +TG  PSNYV P +
Sbjct: 5   FVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQTGYIPSNYVAPSD 60

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (130), Expect = 1e-10
 Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
            L  Y + +   LS  +G+ + I   T   WW     + G+    G+ P++YV   
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTGQ---TGYIPSNYVAPS 59

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.4 bits (162), Expect = 4e-15
 Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDETG 99
            A+Y+F +    +L  + G   ++ +++N    W A +  G  G+ P +YV       
Sbjct: 5  VVAMYDFQATEAHDLRLERGQEYII-LEKNDLHWWRARDKYGSEGYIPSNYVTGKKSNN 62

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.4 bits (149), Expect = 3e-13
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN-DWWTGTIGD-RTGLFPSNYVVPYE 158
           E  +A Y + +TE  DL   + +   + +K +  WW         G  PSNYV   +
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDKYGSEGYIPSNYVTGKK 59

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           EI   +  + AT +  L L RGQ  +I +K    WW        K    G+ P++YV   
Sbjct: 3   EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARD----KYGSEGYIPSNYVTGK 58

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 7e-15
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC 95
           E  + +A+  + ++  + L+F   DII V      +  W  GE+ G  GWFP+SYV+  
Sbjct: 8  VENLKAQALCSWTAKKDNHLNFSKHDIITV---LEQQENWWFGEVHGGRGWFPKSYVKII 64

Query: 96 DET 98
            +
Sbjct: 65 PGS 67

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 5e-13
 Identities = 14/57 (24%), Positives = 28/57 (49%)

Query: 98  TGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYV 154
           +  V      A   + + +   L F++ ++I V +++ +WW G +    G FP +YV
Sbjct: 5   SSGVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQENWWFGEVHGGRGWFPKSYV 61

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.4 bits (118), Expect = 8e-09
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G +   A  L  +TA     L+ S+  +I + ++    WW GE+         GWFP SY
Sbjct: 7   GVENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEV-----HGGRGWFPKSY 60

Query: 275 VKVM 278
           VK++
Sbjct: 61  VKII 64

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
          +EY   RA+++F   + ++L F+ GDI+ +  K   +  W A +  G+ G  P  YVE 
Sbjct: 1  AEY--VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ-WWNAEDSEGKRGMIPVPYVEK 56

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.0 bits (156), Expect = 2e-14
 Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD-RTGLFPSNYVVPY 157
           EY  A + ++  +  DL F + +++ +  K  + WW     + + G+ P  YV  Y
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDSEGKRGMIPVPYVEKY 57

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.9 bits (135), Expect = 2e-11
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           E    L  +     E L   +G ++ IR K    WW  E      + + G  P  YV+
Sbjct: 2   EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAED----SEGKRGMIPVPYVE 55

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.8 bits (158), Expect = 2e-14
 Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 4/58 (6%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          + +RA+Y++++ + DE+SF+ GD I+       + GW+ G ++  G+TG  P +YVE 
Sbjct: 4  KIFRAMYDYMAADADEVSFKDGDAIINVQAI--DEGWMYGTVQRTGRTGMLPANYVEA 59

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (140), Expect = 5e-12
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD--RTGLFPSNYV 154
           + + A Y Y + +  +++F   + I   +  ++ W  GT+    RTG+ P+NYV
Sbjct: 4   KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTGRTGMLPANYV 57

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (133), Expect = 5e-11
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           +I   +  Y A  ++++S   G  I+  +    GW  G +Q  G   + G  PA+YV+ +
Sbjct: 4   KIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRTG---RTGMLPANYVEAI 60

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (156), Expect = 3e-14
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD 96
              A+Y++ + + ++LSFQ GD ++V ++++ E          + G+ P +YV   D
Sbjct: 5  IIVVALYDYEAIHHEDLSFQKGDQMVV-LEESGEWWKARSLATRKEGYIPSNYVARVD 61

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTG--TIGDRTGLFPSNYVVPYE 158
             +A Y Y++    DL+F + + + V ++  +WW        + G  PSNYV   +
Sbjct: 6   IVVALYDYEAIHHEDLSFQKGDQMVVLEESGEWWKARSLATRKEGYIPSNYVARVD 61

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (122), Expect = 2e-09
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           I   L  Y A   E LS  +G  +++ ++ +  WW+    A  K    G+ P++YV  +
Sbjct: 6   IVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATRK---EGYIPSNYVARV 60

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 5e-14
 Identities = 43/66 (65%), Positives = 53/66 (80%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASY 274
           G   EIA V + Y A+ SEQLSL+ GQLI+I KK T+GWW+GELQA+GKKRQ GWFPAS+
Sbjct: 4   GSSGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASH 63

Query: 275 VKVMGG 280
           VK++G 
Sbjct: 64  VKLLGP 69

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 6e-12
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 7/70 (10%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-----RGQTGWFPES 90
           S     +    +V+   ++LS  PG +I++  K     GW  GEL     + Q GWFP S
Sbjct: 5   SSGEIAQVTSAYVASGSEQLSLAPGQLILILKKN--TSGWWQGELQARGKKRQKGWFPAS 62

Query: 91  YVEPCDETGE 100
           +V+    + E
Sbjct: 63  HVKLLGPSSE 72

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 9e-10
 Identities = 15/68 (22%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDR-----TGLFPSNYVVPY 157
           E       Y ++    L+    ++I + KK    WW G +  R      G FP+++V   
Sbjct: 8   EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLL 67

Query: 158 EAQTPAAA 165
              +  A+
Sbjct: 68  GPSSERAS 75

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 6e-14
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 40  RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQT-GWFPESYVEPCDET 98
             +A++++ ++  DEL+F    II    KQ  E GW  G+  G+   WFP +YVE     
Sbjct: 8   AVKALFDYKAQREDELTFIKSAIIQNVEKQ--EGGWWRGDYGGKKQLWFPSNYVEEMVNP 65

Query: 99  GEVVPE 104
             +  +
Sbjct: 66  EGIHRD 71

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (144), Expect = 2e-12
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRT-GLFPSNYVVPYE 158
                 A + Y +    +LTF +  +I   +K+   WW G  G +    FPSNYV    
Sbjct: 5   FKCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGGKKQLWFPSNYVEEMV 63

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+P  K       L  Y A   ++L+  +  +I   +K   GWW G+       ++  WF
Sbjct: 1   GSPTFK--CAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDY----GGKKQLWF 54

Query: 271 PASYVKVM 278
           P++YV+ M
Sbjct: 55  PSNYVEEM 62

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (151), Expect = 1e-13
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 31 DPTGVSEYRRYRAIYEFVSRNGD-ELSFQPGDIIMVPVKQNAEPG----WLAGELRGQTG 85
          DP+ +      RA+Y+FV  N + E++ + GD++ +  K++        W      G  G
Sbjct: 1  DPSKL---EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIG 57

Query: 86 WFPESYVE 93
          + P +Y+E
Sbjct: 58 YIPYNYIE 65

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 104 EYYIAAYPYDSTEP-GDLTFNQDEVIYVTKKEN------DWWTGTIGD-RTGLFPSNYV 154
           E+  A Y +    P  ++   + +++ +  K++      DWW     +   G  P NY+
Sbjct: 6   EFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYI 64

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (124), Expect = 9e-10
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 217 KPEIATVLAPYTATSSEQ-LSLSRGQLIMIRKKTTT-----GWWEGELQAKGKKRQVGWF 270
           K E A  L  +   + E  ++L +G L+ I  K         WW+       K   +G+ 
Sbjct: 4   KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRT----KNGNIGYI 59

Query: 271 PASYVKVM 278
           P +Y++++
Sbjct: 60  PYNYIEII 67

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 62.2 bits (151), Expect = 2e-13
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEP 94
          + Y  I       G  L   PGDI+ +  K  AE  W  G      + GWFP + V P
Sbjct: 11 QEYYGIPPPPGAFGPFLRLNPGDIVEL-TKAEAEHNWWEGRNTATNEVGWFPCNRVHP 67

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.4 bits (141), Expect = 4e-12
 Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKE--NDWWTGTIGD--RTGLFPSNYVVPY 157
           Y    P        L  N  +++ +TK E  ++WW G        G FP N V PY
Sbjct: 13  YYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNEVGWFPCNRVHPY 68

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.2 bits (125), Expect = 6e-10
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 224 LAPYTATSSEQLSLSRGQLIMI-RKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           + P        L L+ G ++ + + +    WWEG   A  +   VGWFP + V 
Sbjct: 16  IPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTATNE---VGWFPCNRVH 66

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (148), Expect = 4e-13
 Identities = 11/56 (19%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP 94
              A++ +   +  +L F+ G+ + + ++Q+ E         GQ G+ P ++V  
Sbjct: 7  NLVIALHSYEPSHDGDLGFEKGEQLRI-LEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (141), Expect = 3e-12
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 2/56 (3%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW--TGTIGDRTGLFPSNYVVP 156
               IA + Y+ +  GDL F + E + + ++  +WW        + G  P N+V  
Sbjct: 6   DNLVIALHSYEPSHDGDLGFEKGEQLRILEQSGEWWKAQSLTTGQEGFIPFNFVAK 61

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 211 GTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWF 270
           G+P   +  +   L  Y  +    L   +G+ + I ++ +  WW+ +    G+    G+ 
Sbjct: 1   GSPL--QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-SGEWWKAQSLTTGQ---EGFI 54

Query: 271 PASYV 275
           P ++V
Sbjct: 55  PFNFV 59

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.5 bits (147), Expect = 5e-13
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYVEPCD 96
           A Y++ +   +EL+F   D I+       +  W  GEL   G  G FP +YV   +
Sbjct: 4  TAEYDYDAAEDNELTFVENDKIINIEFV--DDDWWLGELEKDGSKGLFPSNYVSLGN 58

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.0 bits (143), Expect = 2e-12
 Identities = 21/53 (39%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 105 YYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGD--RTGLFPSNYV 154
           +  A Y YD+ E  +LTF +++ I   +  +D WW G +      GLFPSNYV
Sbjct: 2   WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDGSKGLFPSNYV 54

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.5 bits (139), Expect = 7e-12
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
           AT    Y A    +L+      I+  +     WW GEL+  G     G FP++YV +
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDG---SKGLFPSNYVSL 56

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (147), Expect = 6e-13
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 36 SEYRRYRAIYEFV-SRNGDELSFQPGDIIMVPVKQNAEPGWLAGELR--GQTGWFPESYV 92
          S  ++ + I+      N   LSF  GD++ + + +  + GWL GE       GWFP SY 
Sbjct: 5  SSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD-GWLYGEHDTTKARGWFPSSYT 63

Query: 93 EPCDE 97
          +    
Sbjct: 64 KLLSG 68

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.3 bits (115), Expect = 2e-08
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)

Query: 215 GKKPEIATVLAPYTA-TSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVGWFPA 272
           G   +    + P+TA  +   LS ++G ++ ++  +   GW  GE          GWFP+
Sbjct: 4   GSSGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKA---RGWFPS 60

Query: 273 SYVKVMGG 280
           SY K++ G
Sbjct: 61  SYTKLLSG 68

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 5/56 (8%)

Query: 104 EYYIAAYPYDSTE-PGDLTFNQDEVIYVTKKEND--WWTGTIG--DRTGLFPSNYV 154
           +     +P+ +      L+F Q +V+ +   E    W  G        G FPS+Y 
Sbjct: 8   QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSSYT 63

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (146), Expect = 6e-13
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           Y AI  + +  GDE+S   G+ + V  K     GW        TG+FP  Y++
Sbjct: 2  PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLL--DGWWVIRKDDVTGYFPSMYLQ 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 7e-13
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEND-WWTGTIGDRTGLFPSNYV 154
           E Y+A   Y + E  +++  + E + V  K  D WW     D TG FPS Y+
Sbjct: 1   EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKDDVTGYFPSMYL 52

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (117), Expect = 5e-09
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
           E    +  YTA   +++SL  G+ + +  K   GWW             G+FP+ Y++
Sbjct: 1   EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD-----DVTGYFPSMYLQ 53

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.1 bits (148), Expect = 6e-13
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 13/70 (18%)

Query: 40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---GWLAG----------ELRGQTGW 86
          + +A +++ + + DEL  + GD+++V   QN E    GWL G          EL    G 
Sbjct: 14 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGV 73

Query: 87 FPESYVEPCD 96
          FPE++ E   
Sbjct: 74 FPENFTERVQ 83

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.1 bits (127), Expect = 4e-10
 Identities = 13/73 (17%), Positives = 23/73 (31%), Gaps = 16/73 (21%)

Query: 102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN------DWWTGTIGD----------R 145
                 A + Y +T+  +L     +V+ V   +N       W  G               
Sbjct: 11  FMFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKC 70

Query: 146 TGLFPSNYVVPYE 158
            G+FP N+    +
Sbjct: 71  RGVFPENFTERVQ 83

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 206 TAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTT-----GWWEGELQA 260
           T  +   P G           YTAT +++L L  G ++++           GW  G  ++
Sbjct: 1   TTGRLDLPPGF-MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKES 59

Query: 261 KGKKR-----QVGWFPASYVKVM 278
              +        G FP ++ + +
Sbjct: 60  DWNQHKELEKCRGVFPENFTERV 82

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 1e-12
 Identities = 13/59 (22%), Positives = 22/59 (37%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
              A Y F      +L F  GD++ +         + A    G+ G  P +YV+  + 
Sbjct: 7  TECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 65

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-10
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKKEND--WWTGTIGD-RTGLFPSNYVVPYEA 159
            IA Y +  T   DL F + +V+ +     D  W+       R G+ P+NYV   E 
Sbjct: 9   CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNKVGREGIIPANYVQKREG 65

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (114), Expect = 2e-08
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 210 AGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLI-MIRKKTTTGWWEGELQAKGKKRQVG 268
           A  P G +         +  T+ + L   +G ++ ++       W++ +     K  + G
Sbjct: 1   ASWPSGTE---CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKN----KVGREG 53

Query: 269 WFPASYVKVMGG 280
             PA+YV+   G
Sbjct: 54  IIPANYVQKREG 65

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 2e-12
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 15/83 (18%)

Query: 36  SEYRRYRAIYEFVSRNGDELSFQPGDIIMV-------------PVKQNAEPGWLAG--EL 80
           +E  +YRA+Y++     +++    GDI+ V                +  E GWL G  E 
Sbjct: 1   AEGYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNET 60

Query: 81  RGQTGWFPESYVEPCDETGEVVP 103
            G+ G FP +YVE         P
Sbjct: 61  TGERGDFPGTYVEYIGRKKISPP 83

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (109), Expect = 1e-07
 Identities = 15/67 (22%), Positives = 20/67 (29%), Gaps = 18/67 (26%)

Query: 106 YIAAYPYDSTEPGDLTFNQDEVIYVTKK----------------ENDWWTGTI--GDRTG 147
           Y A Y Y      D+  +  +++ V K                 E  W  G        G
Sbjct: 6   YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 65

Query: 148 LFPSNYV 154
            FP  YV
Sbjct: 66  DFPGTYV 72

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 18/74 (24%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTT---------------GWWEGELQAKGKKR 265
              L  Y     E + L  G ++ + K +                 GW  G  +  G++ 
Sbjct: 6   YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGER- 64

Query: 266 QVGWFPASYVKVMG 279
             G FP +YV+ +G
Sbjct: 65  --GDFPGTYVEYIG 76

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 3e-12
 Identities = 13/59 (22%), Positives = 27/59 (45%), Gaps = 2/59 (3%)

Query: 39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE 97
          +  ++ Y+FV+RN  ELS    D++   +  +    W      G +G+ P + ++    
Sbjct: 2  KYAKSKYDFVARNSSELSVMKDDVLE--ILDDRRQWWKVRNASGDSGFVPNNILDIMRT 58

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.9 bits (132), Expect = 6e-11
 Identities = 10/56 (17%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGD-RTGLFPSNYVVPYE 158
           +Y  + Y + +    +L+  +D+V+ +      WW        +G  P+N +    
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMR 57

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.1 bits (104), Expect = 3e-07
 Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM 278
           + A     + A +S +LS+ +  ++ I       W              G+ P + + +M
Sbjct: 2   KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNAS-----GDSGFVPNNILDIM 56

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (140), Expect = 4e-12
 Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAE-PGWLAGELRGQTGWFPESYVE 93
          + +Y +V ++ DE++  PGD I +  +        +  +  G+TG  P +Y+ 
Sbjct: 3  KVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYIR 55

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.1 bits (122), Expect = 1e-09
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 4/51 (7%)

Query: 108 AAYPYDSTEPGDLTFNQDEVIYVTKKEND----WWTGTIGDRTGLFPSNYV 154
             Y Y   +  ++T    + I +  ++               TGL P+ Y+
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTTYI 54

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.9 bits (119), Expect = 4e-09
 Identities = 10/57 (17%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV 277
             VL  Y     ++++++ G  I +  + T   W           + G  P +Y+++
Sbjct: 2   NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTK--INNDTTGETGLVPTTYIRI 56

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 10/52 (19%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 42 RAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE 93
           A+Y++ + +  EL+ +  +     +  +    W   +  G  G+ P SY+ 
Sbjct: 2  IALYDYQTNDPQELALRCDEEY-YLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 107 IAAYPYDSTEPGDLTFNQDEVIY-VTKKENDWWTGTIGD-RTGLFPSNYVV 155
           IA Y Y + +P +L    DE  Y +   E  WW     +   G  PS+Y+V
Sbjct: 2   IALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDKNGHEGYAPSSYLV 52

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 49.1 bits (117), Expect = 5e-09
 Identities = 10/54 (18%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 223 VLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK 276
            L  Y     ++L+L   +   +   +   WW  + +        G+ P+SY+ 
Sbjct: 3   ALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK----NGHEGYAPSSYLV 52

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (129), Expect = 3e-10
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 6/84 (7%)

Query: 27  TASTDPTGVSEYRRYRAIYEFVSRNG------DELSFQPGDIIMVPVKQNAEPGWLAGEL 80
           + ++      +     A Y +   +G       EL    G  + V    + +  +    L
Sbjct: 6   SGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL 65

Query: 81  RGQTGWFPESYVEPCDETGEVVPE 104
            GQ G  P ++V+   +    +  
Sbjct: 66  DGQRGLVPSNFVDFVQDNESRLAS 89

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-06
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 103 PEYYIAAYPYDSTEP------GDLTFNQDEVIYVTKKENDWWT---GTIGDRTGLFPSNY 153
               +A Y Y+  +        +L     + +YV    ++        +  + GL PSN+
Sbjct: 17  VHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELLDGQRGLVPSNF 76

Query: 154 VVPYEAQTPAAAVDPTPAT 172
           V   +      A    P++
Sbjct: 77  VDFVQDNESRLASTSGPSS 95

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 4e-05
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSS------EQLSLSRGQLI-MIRKKTTTGWWE 255
           SS ++  +      K  +      Y            +L L+ G+ + +       G++E
Sbjct: 2   SSGSSGTSKQRYSGKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYE 61

Query: 256 GELQAKGKKRQVGWFPASYVKVM 278
           GEL       Q G  P+++V  +
Sbjct: 62  GEL----LDGQRGLVPSNFVDFV 80

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (121), Expect = 4e-09
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 29  STDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEP---------GWLAGE 79
             D           A+ ++++ +   L+   G ++ V  K              G   G+
Sbjct: 12  CADQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGD 71

Query: 80  LRGQTGWFPESYVEPCDETGEVVPE 104
           L  + G+FP S V           +
Sbjct: 72  LAARLGYFPSSIVREDQTLKPGKVD 96

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (119), Expect = 1e-08
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 96  DETGEVVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKEN----DWWTGTIGD------- 144
           D+         +A   Y + +   LT ++ +V+YV  K       +W G++         
Sbjct: 14  DQECSHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLA 73

Query: 145 -RTGLFPSNYVVPYEAQTPAAAVDPTPAT 172
            R G FPS+ V   +   P      T   
Sbjct: 74  ARLGYFPSSIVREDQTLKPGKVDVKTDKW 102

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 7e-06
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 6/65 (9%)

Query: 219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTG---WWEGELQAKGKKR---QVGWFPA 272
            +A  L  Y A     L++ RGQ++ +  K       +W G +Q         ++G+FP+
Sbjct: 22  SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 81

Query: 273 SYVKV 277
           S V+ 
Sbjct: 82  SIVRE 86

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (118), Expect = 6e-09
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLA-----GELRGQTGWFPES 90
          S       I ++ +   +E+    G+++ V +  N +   L             GW P S
Sbjct: 5  SSGSTMTVIKDYYALKENEICVSQGEVVQV-LAVNQQNMCLVYQPASDHSPAAEGWVPGS 63

Query: 91 YVEP 94
           + P
Sbjct: 64 ILAP 67

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (104), Expect = 5e-07
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 215 GKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKR-QVGWFPAS 273
           G      TV+  Y A    ++ +S+G+++ +              A        GW P S
Sbjct: 4   GSSGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGS 63

Query: 274 YVKVMGG 280
            +    G
Sbjct: 64  ILAPFSG 70

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (99), Expect = 2e-06
 Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 7/68 (10%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWW-------TGTIGDRTGLFPSNYVV 155
                    Y + +  ++  +Q EV+ V               +       G  P + + 
Sbjct: 7   GSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILA 66

Query: 156 PYEAQTPA 163
           P+   +  
Sbjct: 67  PFSGPSSG 74

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (118), Expect = 1e-08
 Identities = 12/75 (16%), Positives = 33/75 (44%), Gaps = 5/75 (6%)

Query: 103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKE-----NDWWTGTIGDRTGLFPSNYVVPY 157
            + + A   +++ +  D++  + +++ V KK+      + W    G   G   S+++ PY
Sbjct: 17  EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPY 76

Query: 158 EAQTPAAAVDPTPAT 172
             +   +     P++
Sbjct: 77  NPRRSHSDASSGPSS 91

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 10/73 (13%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 28 ASTDPTGVSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAE--PGWLAGELRGQTG 85
           ++        + ++A   F +    ++S   GD++ V  K++          +     G
Sbjct: 7  GASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKG 66

Query: 86 WFPESYVEPCDET 98
          +   S+++P +  
Sbjct: 67 FVYSSFLKPYNPR 79

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (80), Expect = 0.001
 Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 203 SSFTAAQAGTPKGKKPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG 262
           SS ++  +   +    ++      + A     +SL  G L+ + KK              
Sbjct: 2   SSGSSGASLLARYPPEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDP-MGSQNRWLID 60

Query: 263 KKRQVGWFPASYVKVM 278
                G+  +S++K  
Sbjct: 61  NGVTKGFVYSSFLKPY 76

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 4e-07
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 12/80 (15%)

Query: 105 YYIAAYPYDSTE-----PGDLTFNQDEVIYVTKKEND-WWTGTIGD------RTGLFPSN 152
           Y  A + YD T+        L+F   +V++V    ++ WW              G  PS 
Sbjct: 3   YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSK 62

Query: 153 YVVPYEAQTPAAAVDPTPAT 172
             V     +   A D   ++
Sbjct: 63  RRVERREWSRLKAKDWGSSS 82

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 42 RAIYEFVSRN-----GDELSFQPGDIIMVPVKQNAEPGWLA-----GELRGQTGWFPESY 91
          RA++++            LSF+ GD+ +  +    E  W A            G+ P   
Sbjct: 5  RALFDYDKTKDCGFLSQALSFRFGDV-LHVIDAGDEEWWQARRVHSDSETDDIGFIPSKR 63

Query: 92 VEPCDET 98
               E 
Sbjct: 64 RVERREW 70

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 232 SEQLSLSRGQLIMIRKKTTTGWWEGELQAK-GKKRQVGWFPASYV 275
           S+ LS   G ++ +       WW+        +   +G+ P+   
Sbjct: 20  SQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRR 64

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 43.0 bits (101), Expect = 2e-06
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 105 YYIAAYPYDSTEPGD-------LTFNQDEVIYVTKKEN-DWWTGTI---GDRTGLFPSNY 153
                  Y + +  D       ++F   + ++V +K N DWW G +   G   G  PS  
Sbjct: 23  AVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEGCEIGFIPSPV 82

Query: 154 VV 155
            +
Sbjct: 83  KL 84

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 41.5 bits (97), Expect = 9e-06
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 42 RAIYEFVSRNGDE-------LSFQPGDIIMVPVKQNAEPGWLAGELR---GQTGWFPESY 91
          R    + +   D+       +SF+  D + V  K N    W  G L     + G+ P   
Sbjct: 25 RTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFN--NDWWIGRLVKEGCEIGFIPSPV 82

Query: 92 V 92
           
Sbjct: 83 K 83

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 38.0 bits (88), Expect = 1e-04
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 207 AAQAGTPKGK-KPEIATVLAPYTATSSEQ---------LSLSRGQLIMIRKKTTTGWWEG 256
            AQA   K K KP    V      +++++         +S      + +++K    WW G
Sbjct: 7   QAQAQLEKAKTKPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIG 66

Query: 257 ELQAKGKKRQVGWFPASYV 275
            L  +G +  +G+ P+   
Sbjct: 67  RLVKEGCE--IGFIPSPVK 83

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.6 bits (89), Expect = 2e-04
 Identities = 18/113 (15%), Positives = 32/113 (28%), Gaps = 16/113 (14%)

Query: 102 VPEYYIAAYPYDSTEPG-------DLTFNQDEVIYVTKKEND-WWTGTI---GDRTGLFP 150
           V         Y              ++F+  + +++ +K N+ WW G +   G   G  P
Sbjct: 22  VAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKEGCEIGFIP 81

Query: 151 SNYVVPYEAQTPAAAVDPTPATPVVKDTPTKSEGVTRTSSVSGGSRSGTPDFS 203
           S   +                        + S G      VSG  R+     +
Sbjct: 82  SPLRLENIRIQQEQKRKRFHG-GKSSGNSSSSLG----EMVSGTFRATPTTTA 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	290
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.77
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.76
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.68
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.66
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.66
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.66
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.65
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.65
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.65
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.64
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.64
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.64
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.63
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.62
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.62
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.62
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.62
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.62
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.62
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.61
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.61
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.6
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.6
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.6
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.6
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.59
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.59
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.58
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.58
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.58
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.58
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.58
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.57
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.57
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.57
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.57
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.56
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.56
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.56
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.56
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.56
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.56
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.56
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.55
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.55
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.55
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.55
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.55
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.55
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.54
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.54
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.53
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.53
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.53
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.53
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.52
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.52
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.52
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.51
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.51
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.51
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.5
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.5
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.5
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.5
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.5
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.49
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.49
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.48
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.47
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.47
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.47
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.47
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.46
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.46
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.46
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.46
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.46
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.44
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.43
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.43
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.42
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.41
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.41
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.4
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.37
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.35
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.33
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.31
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.29
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.12
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.09
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.93
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	98.81
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	95.21
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	95.15

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-19  Score=131.23  Aligned_cols=80  Identities=40%  Similarity=0.728  Sum_probs=70.7

Q ss_pred             CCeeeeccCCcccCCccCCC------ccceEEEEcccCCCCCCCCceecCCCEEEEEee-cCCeEEEEeCCeeEEecCCC
Q psy7076          81 RGQTGWFPESYVEPCDETGE------VVPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK-ENDWWTGTIGDRTGLFPSNY  153 (290)
Q Consensus        81 ~g~~G~~P~~yv~~~~~~~~------~~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~-~~~W~~~~~~g~~G~~P~~~  153 (290)
                      +|++|+||++||+.+.....      .....++|+|+|.++.++||+|++||+|.|++. +++||+++++|++||||.+|
T Consensus         6 ~G~~G~~P~~yv~~~~~~~~~~~~~~~~~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~g~~G~~P~ny   85 (98)
T d1udla_           6 SGQKGWFPASHVKLLGPSSERATPAFHPVCQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEINGVTGLFPSNY   85 (98)
T ss_dssp             SSCCSSCCCCCCCCCSCCCCCCCSCCCCSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSSSCBCCEETTS
T ss_pred             CCceeeEcccceeECCCcccccCCCCCCccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEECCeEEEEchHH
Confidence            78999999999998766432      135679999999999999999999999999987 68999999999999999999


Q ss_pred             eEecCCC
Q psy7076         154 VVPYEAQ  160 (290)
Q Consensus       154 v~~~~~~  160 (290)
                      |+.+...
T Consensus        86 Ve~~~~~   92 (98)
T d1udla_          86 VKMTTDS   92 (98)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998743

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.3e-19  Score=131.21  Aligned_cols=59  Identities=36%  Similarity=0.745  Sum_probs=52.7

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..++|||||+++.++||+|++||+|.|+++.++|||+|++.  |   +.||||++||+.+...+
T Consensus        35 ~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~gWw~g~~~--g---~~G~~P~nyVe~~~~~~   93 (98)
T d1udla_          35 CQVIAMYDYAANNEDELSFSKGQLINVMNKDDPDWWQGEIN--G---VTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             EEEEESSCCCCSSTTSCCCCTTCEEEECBCCSSSEEBCBSS--S---CBCCEETTSEEECCCCS
T ss_pred             cEEEEccCCCCCCCCEeeEcCCCEEEEeEecCCCeEEEEEC--C---eEEEEchHHEEECCCCC
Confidence            45899999999999999999999999999999999999865  3   38999999999987543

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=2.3e-17  Score=108.12  Aligned_cols=57  Identities=32%  Similarity=0.723  Sum_probs=51.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ++|+|||+|.++.++||+|++||+|.|++..+.+.+||.++.+|++||||.+||+.+
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEECCcEEEEcHHHEEEC
Confidence            589999999999999999999999999866545678999999999999999999854

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.5e-17  Score=106.28  Aligned_cols=55  Identities=38%  Similarity=0.814  Sum_probs=50.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      +.++|||+|.++.++||+|++||+|.|++.  .+++||.|+.+|+.|+||++||+++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDS--SNPSWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEE--cCCCEEEEEECCcEEEEEHHHEEEc
Confidence            568999999999999999999999999753  5778999999999999999999865

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.66  E-value=6.2e-17  Score=105.96  Aligned_cols=55  Identities=35%  Similarity=0.784  Sum_probs=50.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      ..++|||+|.++.++||+|.+||+|.|+..  .+++||.|+++|+.||||.+||+++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINK--DDPNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEC--SSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEE--cCCCEEEEEECCeEEEEEhhhEEEC
Confidence            568999999999999999999999999754  5789999999999999999999875

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.2e-16  Score=110.69  Aligned_cols=66  Identities=64%  Similarity=1.050  Sum_probs=58.8

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      .+.+++|||+|.++.++||+|++||+|.|+++.+++||+|++.++.+.++.||||++||+++....
T Consensus         6 ~g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~   71 (80)
T d1ue9a_           6 SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGPSS   71 (80)
T ss_dssp             CCEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSSEEEEEECSCCSSCCEEEEETTSEEECCSCC
T ss_pred             CCCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCCeEEEEEccCCCCCCEeEEEheeEEECCCCC
Confidence            457799999999999999999999999999999999999998765555679999999999986543

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=7e-17  Score=105.72  Aligned_cols=54  Identities=37%  Similarity=0.759  Sum_probs=49.9

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP   94 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~   94 (290)
                      ++++|||+|.++.++||+|++||+|.|++.  .+++||.|+.+|+.||||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDD--SDANWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEE--eCCCEEEEEECCeEEEEehHhEee
Confidence            689999999999999999999999999754  578999999999999999999974

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.4e-17  Score=106.44  Aligned_cols=57  Identities=35%  Similarity=0.835  Sum_probs=51.9

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      ..+|+|+|+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||++||++++
T Consensus         2 l~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~--~~~~Ww~~~~~g~~G~~P~~yve~ld   58 (58)
T d1ng2a1           2 LQTYRAIADYEKTSGSEMALSTGDVVEVVEK--SESGWWFCQMKAKRGWIPASFLEPLD   58 (58)
T ss_dssp             CEEEECSSCBCCSSTTCCCBCTTCEEEEEEC--CTTSCCEEEECCCCCCCCGGGCCCSS
T ss_pred             ceEEEECccCcCCCCCCcCCCCCCEEEEEEe--cCCCeEEEEECCCCcEEcHhHEEECc
Confidence            3579999999999999999999999999753  67899999999999999999999763

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.3e-17  Score=103.08  Aligned_cols=52  Identities=31%  Similarity=0.564  Sum_probs=48.3

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCccc
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVE   93 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~   93 (290)
                      .|+|||+|.++.++||+|.+||+|.|+.  +.++|||.|+.+|++||||++||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~--~~~~gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIH--KLLDGWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEE--CCTTSSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEe--ecCCceEEEEECCcEeEecHHhCC
Confidence            5899999999999999999999999974  377899999999999999999985

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.5e-17  Score=104.35  Aligned_cols=54  Identities=39%  Similarity=0.807  Sum_probs=49.3

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      .++|||+|.++.++||+|++||+|.|+..  .+++||.|+.+|++|+||.+||+++
T Consensus         3 yv~Alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           3 YVQALFDFDPQEDGELGFRRGDFIHVMDN--SDPNWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECcCCCcCCcCCcCCCCCCEEEEEEe--cCCCEEEEEECCeEEEEEHhHEEEC
Confidence            57999999999999999999999999743  5789999999999999999999864

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.2e-17  Score=106.66  Aligned_cols=56  Identities=36%  Similarity=0.751  Sum_probs=51.2

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      .+++|||+|.++.++||+|++||+|.|+..  .+++||.|+.+|+.||||.+||++..
T Consensus         6 ~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~--~~~~Ww~g~~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           6 SQVEALFSYEATQPEDLEFQEGDIILVLSK--VNEEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEE--SSSSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEE--cCCCEEEEEECCcEEEEchHHeEECC
Confidence            579999999999999999999999999754  56899999999999999999998763

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.3e-16  Score=106.27  Aligned_cols=58  Identities=21%  Similarity=0.471  Sum_probs=50.9

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccC-CCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN-AEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~-~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      .+++|||+|.++.++||+|++||+|.|+...+ .+.+||.|+++|++|+||++||++++
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~P   63 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP   63 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeCc
Confidence            47899999999999999999999999985432 24579999999999999999998763

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.8e-16  Score=103.36  Aligned_cols=55  Identities=29%  Similarity=0.700  Sum_probs=51.0

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ++|+|+|||.++.++||+|++||+|.|++..++|||.|++.  |   +.|+||++||+++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~g~~~--g---~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNPSWWTGRLH--N---KLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--T---EEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEEC--C---cEEEEEHHHEEEc
Confidence            57999999999999999999999999999999999999975  3   4899999999986

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.6e-17  Score=104.56  Aligned_cols=55  Identities=36%  Similarity=0.712  Sum_probs=46.1

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEP   94 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~   94 (290)
                      ++|+|+|+|.++.++||+|++||+|.|+.. ..+++||.++++|+.||||+|||+.
T Consensus         1 ~~a~Alydy~a~~~~ELs~~~Gd~v~v~~~-~~~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           1 MEAIAKYDFKATADDELSFKRGDILKVLNE-ECDQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             CEEEECSCBCCCSSSCCCBCTTCEEEC-------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEec-cCCCCeEEEEECCcEEEEehhhEEE
Confidence            479999999999999999999999998743 4567899999999999999999974

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.2e-16  Score=107.90  Aligned_cols=64  Identities=28%  Similarity=0.519  Sum_probs=55.3

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccCC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDETG   99 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~~   99 (290)
                      .....++|||+|.++.++||+|++||+|.|+...+.+++||.++. +|+.||||.|||+.+...+
T Consensus         4 ~~l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~~G~~G~vP~~yv~~~~~~p   68 (71)
T d1u5sa1           4 RVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYVVVLSDGP   68 (71)
T ss_dssp             CSSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEETTTEEEEEETTSEEECCCSC
T ss_pred             cccEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEECCCCEEEEChHHEEECCCCC
Confidence            345689999999999999999999999999865545568999985 8999999999999987643

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.63  E-value=1.4e-16  Score=103.10  Aligned_cols=54  Identities=22%  Similarity=0.540  Sum_probs=49.5

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCC
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPC   95 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~   95 (290)
                      .++|||+|.++.++||+|++||+|.|++.  .+++||.|+.+|++||||+|||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~--~~~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNS--TNKDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEE--cCCCEEEEEECCeEEEEeHHHEEEC
Confidence            58999999999999999999999999743  6789999999999999999999864

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=5e-16  Score=101.77  Aligned_cols=56  Identities=30%  Similarity=0.571  Sum_probs=51.7

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      +|+|+|+|.++.++||+|++||+|.|+++.+++||.|++..+|   +.|+||++||+.+
T Consensus         2 ~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g---~~G~~P~~yVe~i   57 (58)
T d1jo8a_           2 WATAEYDYDAAEDNELTFVENDKIINIEFVDDDWWLGELEKDG---SKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEETTTC---CEEEEEGGGEEEC
T ss_pred             EEEEccCCCCCCcCCcCCCCCCEEEEEEEcCCCEEEEEECCCC---CEEEEchHHEEEc
Confidence            5899999999999999999999999999999999999987554   4899999999986

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.8e-16  Score=108.55  Aligned_cols=60  Identities=38%  Similarity=0.730  Sum_probs=53.2

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+.. ..+++||.++++|+.||||.+||+.+..+
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~~~~W~~g~~~g~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHP-SQEPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCB-CSSTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeec-cCCCCEEEEEeCCCEEEEchHHEEECCCC
Confidence            4579999999999999999999999998743 34668999999999999999999988654

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.4e-16  Score=101.16  Aligned_cols=55  Identities=25%  Similarity=0.633  Sum_probs=50.5

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+++|+|||.++.++||+|++||+|.|+++.++|||+|++.     |+.|+||++||++|
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPNWWKGACH-----GQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCCCEEEEEEC-----CeEEEEEHhHEEEC
Confidence            36899999999999999999999999999999999999985     34899999999975

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.9e-16  Score=112.68  Aligned_cols=62  Identities=50%  Similarity=0.931  Sum_probs=54.8

Q ss_pred             CccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          37 EYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        37 ~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      +..+|+|||+|.++.++||+|++||+|.|++....+.+||.++++|++||||.+||+.+...
T Consensus         4 ~~~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           4 GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             SCCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CCeEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            34679999999999999999999999999866555678999999999999999999987653

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.62  E-value=5.3e-16  Score=101.46  Aligned_cols=56  Identities=30%  Similarity=0.684  Sum_probs=51.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|+|.++.++||+|++||+|.|++..+.|||.|++.     ++.|+||++||+++
T Consensus         2 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yvep~   57 (58)
T d1sema_           2 TKFVQALFDFNPQESGELAFKRGDVITLINKDDPNWWEGQLN-----NRRGIFPSNYVCPY   57 (58)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEeEEcCCCEEEEEEC-----CeEEEEEhhhEEEC
Confidence            467999999999999999999999999999999999999975     34899999999985

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=2.4e-16  Score=103.36  Aligned_cols=55  Identities=31%  Similarity=0.539  Sum_probs=49.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      +.++|||+|.++.++||+|++||+|.|++.  .+++||.|++  +|++|+||++||+.+
T Consensus         1 P~~~Alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           1 PWATAEYDYDAAEDNELTFVENDKIINIEF--VDDDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEEC--CSSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEccCCCCCCcCCcCCCCCCEEEEEEE--cCCCEEEEEECCCCCEEEEchHHEEEc
Confidence            468999999999999999999999999743  6789999987  789999999999875

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=5.6e-16  Score=100.24  Aligned_cols=54  Identities=26%  Similarity=0.682  Sum_probs=49.9

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      +++|+|||.++.++||+|++||.|.|+++.++|||+|++.     |+.|+||++||++|
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~Ww~g~~~-----g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEVN-----DRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcCCCEEEEEEC-----CeEEEEeHHHEEEC
Confidence            5899999999999999999999999999999999999975     34899999999875

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5.7e-16  Score=107.98  Aligned_cols=64  Identities=23%  Similarity=0.513  Sum_probs=54.7

Q ss_pred             CCCccEEEEeccccCCCCCCCccCCCCEEEEcccc--CCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ--NAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~--~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+...|+|||+|.++.++||+|++||+|.|++..  ...++||+++.+|+.||||.+||++++..
T Consensus        10 ~~~~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          10 AEGNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             CCSSCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CCCCEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCC
Confidence            33445799999999999999999999999998542  23578999999999999999999988754

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=5.5e-16  Score=106.60  Aligned_cols=58  Identities=31%  Similarity=0.664  Sum_probs=52.4

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|+..   +++||+++++|++||||.+||+.+...
T Consensus        10 ~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~---~~~ww~g~~~g~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_          10 NLKAQALCSWTAKKDNHLNFSKHDIITVLEQ---QENWWFGEVHGGRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEE---CSSEEEEESTTCCCEEEGGGEEECCCS
T ss_pred             CeEEEEccCCCCCCCCEecCCCCCEEEEEEc---cCCeEEEEECCcEEEEchhhEEECCCC
Confidence            4689999999999999999999999999753   468999999999999999999988654

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=4.1e-16  Score=101.66  Aligned_cols=56  Identities=27%  Similarity=0.646  Sum_probs=49.5

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCc
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCD   96 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~   96 (290)
                      .|+|||+|.++.++||+|++||+|.|+.. ..+.+||.++.+|+.||||++||++++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~-~~~~~W~~~~~~g~~G~~P~~yv~~vd   57 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGY-NHNGEWCEAQTKNGQGWVPSNYITPVN   57 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEE-CTTSSEEEEECSSCEEEEEGGGEEESS
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEe-cCCCCEEEEEECCCEeEEchhheEECC
Confidence            58999999999999999999999999754 345578899999999999999998763

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.9e-16  Score=106.46  Aligned_cols=57  Identities=44%  Similarity=0.775  Sum_probs=52.1

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..  .+++||+|+++|++||||.+||+.+..
T Consensus        11 ~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~--~~~~W~~g~~~g~~G~~P~~yv~~i~~   67 (76)
T d1ujya_          11 LIVKARFNFKQTNEDELSVCKGDIIYVTRV--EEGGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSC--CSSSCEEEEETTEEEEECTTTSEECCH
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEeEE--cCCCEEEEEECCcEEEEchHHEEECCC
Confidence            578999999999999999999999999753  578999999999999999999998764

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.7e-16  Score=105.27  Aligned_cols=60  Identities=33%  Similarity=0.671  Sum_probs=53.1

Q ss_pred             CCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      .+..+|+|||+|.++.++||+|++||+|.|+..   +++||+++++|+.||||.+||+++...
T Consensus         6 ~~~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~---~~~Ww~~~~~g~~G~vP~~yv~~~~~~   65 (69)
T d1uhfa_           6 SGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK---DGEWWTGSIGDRSGIFPSNYVKPKDSG   65 (69)
T ss_dssp             CCSEEEECSSCBCCSSSSBCCBCTTCEEEECEE---ETTEEEECSTTCCEEECGGGCEECCCC
T ss_pred             CCCcEEEECccCCCCCcCCcCCCCCCEEEEEEe---cCCEEEEEECCcEEEEchhhEEECCCC
Confidence            345789999999999999999999999999753   457999999999999999999988653

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.2e-15  Score=114.98  Aligned_cols=58  Identities=29%  Similarity=0.506  Sum_probs=52.7

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEeeCCeeeeccCCcccCCcc
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGELRGQTGWFPESYVEPCDE   97 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~~g~~G~~P~~yv~~~~~   97 (290)
                      -.+|+|||+|.++.++||+|++||+|.|+..  .++|||+|+.+|+.||||.+||+.+..
T Consensus        14 g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~--~~~gWw~g~~~g~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2          14 GEPYVAIKAYTAVEGDEVSLLEGEAVEVIHK--LLDGWWVIRKDDVTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEEC--CTTSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             CcEEEECcCCCCCCCCEecCCCCCEEEEeEe--cCCCeEEEEECCeEEEEehhhEEECCC
Confidence            4689999999999999999999999999753  678999999999999999999987654

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=6.7e-16  Score=102.41  Aligned_cols=57  Identities=35%  Similarity=0.638  Sum_probs=51.7

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .+..++|||+|.++.++||+|++||+|.|++..++|||.|++.  |   +.||||++||+++
T Consensus         4 ~g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~Ww~g~~~--g---~~G~~P~~yVe~~   60 (62)
T d1k4us_           4 KGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEEWLEGESK--G---KVGIFPKVFVEDS   60 (62)
T ss_dssp             CCEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSSCEEEECS--S---CEEEECGGGCCCS
T ss_pred             CCCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCCEEEEEEC--C---cEEEEchHHeEEC
Confidence            4567999999999999999999999999999999999999975  3   4899999999875

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=97.25  Aligned_cols=52  Identities=27%  Similarity=0.604  Sum_probs=47.5

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceE
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK  276 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~  276 (290)
                      .++|+|+|.++.++||+|++||+|.|+++.++|||.|+..     ++.||||++||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~gWw~g~~~-----g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD-----DVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTTSSEEEESS-----SCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCCceEEEEEC-----CcEeEecHHhCC
Confidence            3689999999999999999999999999999999999964     248999999996

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.5e-16  Score=104.25  Aligned_cols=61  Identities=25%  Similarity=0.597  Sum_probs=53.3

Q ss_pred             CCCccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      .....+++|||+|.++.++||+|++||+|.|+.  ..+++||.++. +|+.||||++||+.+.+
T Consensus         5 ~~~~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~--~~~~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           5 TSELKKVVALYDYMPMNANDLQLRKGDEYFILE--ESNLPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CSCCCEEEBSSCCCCSSSSSCCCCSSCEEECCC--CCSSSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CCCCEEEEECcCCCCCCcCCcCCCCCCEEEEEE--EcCCCeEEEEECCCCEEEEcHHHeEECcC
Confidence            344578999999999999999999999999974  35778999975 89999999999998754

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.8e-16  Score=101.85  Aligned_cols=58  Identities=26%  Similarity=0.536  Sum_probs=52.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      +..++|+|||.++.++||+|++||+|.|+++.+++||.+++..+   ++.|+||++||+.|
T Consensus         3 G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~W~~~~~~~~---g~~G~vP~nyve~i   60 (60)
T d1arka_           3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEGWMYGTVQRT---GRTGMLPANYVEAI   60 (60)
T ss_dssp             CCCEECCSCCCCSSSSBCCCCTTCEECCSEECSSSEEEEECTTT---CCEEEEETTTCEEC
T ss_pred             CcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCCCEEEEEECCC---CCEEEEcHHHEEEC
Confidence            56699999999999999999999999999999999999998654   45899999999975

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.4e-15  Score=104.00  Aligned_cols=59  Identities=31%  Similarity=0.679  Sum_probs=50.3

Q ss_pred             cEEEEeccccCC-CCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSR-NGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~-~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~~   98 (290)
                      .+|+|||+|.+. .++||+|++||+|.|+. ....++||.|++  +|++||||.|||+.+..+
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~-~~~~~gW~~g~~~~~g~~G~fP~nyVe~i~~p   69 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLI-PEEKDGWLYGEHDTTKARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECC-SSCBTTEEEEEETTTCCEEEEEGGGCEECSSC
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEE-eecCCCeEEEEECCCCCEEEEchhhEEECCCC
Confidence            579999999985 57889999999999974 335678999987  589999999999998653

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=1.8e-15  Score=98.52  Aligned_cols=55  Identities=27%  Similarity=0.621  Sum_probs=50.0

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ++++|+|||.++.+++|+|++||+|.|+++.+++||.++.. +   |+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~---g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQWWNAEDS-E---GKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSSSSEEEEECT-T---SCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC-C---CCEEEEcHHHeEE
Confidence            57899999999999999999999999999999999999854 2   3589999999985

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.1e-15  Score=99.61  Aligned_cols=53  Identities=34%  Similarity=0.687  Sum_probs=48.3

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccC
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEP   94 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~   94 (290)
                      .++|||+|.++.+++|+|++||+|.|+..  .+++||.|+. +|+.|+||++||++
T Consensus         3 ~v~Alydy~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           3 YVRALFDFNGNDEEDLPFKKGDILRIRDK--PEEQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC--SSSSEEEEECTTSCEEEEEGGGEEC
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEE--cCCCeEEEEECCCCEEEEcHHHeEE
Confidence            58999999999999999999999999744  6789999986 78999999999985

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.7e-16  Score=102.21  Aligned_cols=55  Identities=36%  Similarity=0.837  Sum_probs=49.4

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      ..++|||+|.++.++||+|++||+|.|+..  .+++||.+++  +|+.|+||+|||+.+
T Consensus         4 ~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~--~~~~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           4 KIFRAMYDYMAADADEVSFKDGDAIINVQA--IDEGWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCEECCSCCCCSSSSBCCCCTTCEECCSEE--CSSSEEEEECTTTCCEEEEETTTCEEC
T ss_pred             cEEEECccCCCCCCCCcCCCCCCEEEEEEE--cCCCEEEEEECCCCCEEEEcHHHEEEC
Confidence            468999999999999999999999999754  6788999987  799999999999864

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.57  E-value=1.1e-15  Score=98.03  Aligned_cols=51  Identities=22%  Similarity=0.439  Sum_probs=46.2

Q ss_pred             EEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCccc
Q psy7076          41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVE   93 (290)
Q Consensus        41 ~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~   93 (290)
                      ++|||+|.++.++||+|++||+|.|+.  ..+++||.++. +|+.||||+|||+
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~--~~~~~Ww~~~~~~g~~G~vP~~yv~   52 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLD--SSEIHWWRVQDKNGHEGYAPSSYLV   52 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECC--CSCSSCEEEECTTSCEEEECGGGEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeE--EcCCCeEEEEeCCCCEEEEeHHHEe
Confidence            589999999999999999999999974  36788999985 8999999999986

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=1.2e-15  Score=100.10  Aligned_cols=56  Identities=23%  Similarity=0.485  Sum_probs=49.4

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|+|+|.++.++||+|++||+|.|+..   .++||.+.. +|+.|+||+|||+.+..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~---~~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDD---RRQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGG---GCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEE---cCCcEEEEEcCCCEEEECHHHeEECCC
Confidence            479999999999999999999999999753   357888875 89999999999998764

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2e-15  Score=98.65  Aligned_cols=54  Identities=26%  Similarity=0.653  Sum_probs=49.3

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..++|+|+|.++.++||+|++||+|.|+++.+++||.|++.  |   +.|+||++||+.
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~W~~g~~~--g---~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDANWWQGENH--R---GTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSSEEEEEET--T---EEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCCEEEEEEC--C---eEEEEehHhEee
Confidence            35899999999999999999999999999999999999975  3   489999999974

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.4e-15  Score=102.78  Aligned_cols=66  Identities=18%  Similarity=0.302  Sum_probs=57.5

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCC-CCceeeEecCCceEEecCCC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKG-KKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g-~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ....++|+|||.++.++||+|++||+|.|+++.+++||.++...+. ..+++||||++||+++...+
T Consensus         6 ~g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~ps   72 (74)
T d1wfwa_           6 SGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGPS   72 (74)
T ss_dssp             CSCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCSTT
T ss_pred             CCCEEEEeEEECCCCCCCccCccCCEEEEEEEcCCCCEEEEeCccCCcCCeeeEEchHHeEECCCCC
Confidence            3567999999999999999999999999999999999999987643 24679999999999987543

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2e-15  Score=103.02  Aligned_cols=59  Identities=24%  Similarity=0.534  Sum_probs=51.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      .+|+|||+|.++.++||+|++||+|.|+.. ..+.+||.++. +|+.||||.+||+.+...
T Consensus         7 ~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~-~~~~~W~~~~~~~g~~G~~P~~yve~~~~~   66 (71)
T d1k9aa1           7 TECIAKYNFHGTAEQDLPFCKGDVLTIVAV-TKDPNWYKAKNKVGREGIIPANYVQKREGV   66 (71)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEE-CSSTTEEEEECTTCCEEEEEGGGEEECCCC
T ss_pred             CEEEEccCCCCCCCCCccCCCCCEEEEeEe-ccCCCEEEEEeCCCCEEEEchHHeEEcccC
Confidence            579999999999999999999999999754 35678999987 689999999999987543

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=2.2e-15  Score=101.59  Aligned_cols=59  Identities=20%  Similarity=0.432  Sum_probs=51.6

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      ...++|||+|.+..++||+|++||+|.|+..  .+.+||.++. +|+.||||++||+.+...
T Consensus         2 ~~~v~Alydf~a~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~g~~G~~P~~yV~~~~~~   61 (67)
T d1gl5a_           2 SEIVVAMYDFQATEAHDLRLERGQEYIILEK--NDLHWWRARDKYGSEGYIPSNYVTGKKSN   61 (67)
T ss_dssp             CSCEEECSCBCCSSSSBCCBCTTCEEEEEEC--SSSSEEEEECSSSCEEEEETTSEESSTTT
T ss_pred             CEEEEECCCCCCCCcCCcCCCCCCEEEEEEe--cCCCcEEEEECCCCEEEEEhHHeEEecCC
Confidence            3468999999999999999999999999753  5778999975 889999999999987653

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=4.4e-15  Score=100.06  Aligned_cols=61  Identities=28%  Similarity=0.539  Sum_probs=53.1

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCCc
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGGI  283 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~  283 (290)
                      .+++|+|||.++.++||+|++||+|.|+++.+.+||.++.. +   |+.||||++||+++.+...
T Consensus         3 ~~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~---g~~G~~P~~yV~~~~~~~~   63 (67)
T d1gl5a_           3 EIVVAMYDFQATEAHDLRLERGQEYIILEKNDLHWWRARDK-Y---GSEGYIPSNYVTGKKSNNL   63 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSSSSEEEEECS-S---SCEEEEETTSEESSTTTTT
T ss_pred             EEEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCcEEEEEC-C---CCEEEEEhHHeEEecCCCc
Confidence            46899999999999999999999999999999999999853 2   3489999999998765443

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.3e-15  Score=107.86  Aligned_cols=61  Identities=16%  Similarity=0.255  Sum_probs=53.1

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccC--CCCCeEEEeeCCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN--AEPGWLAGELRGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~--~~~~W~~g~~~g~~G~~P~~yv~~~~~~   98 (290)
                      ...|+|+|+|.++.++||+|++||+|.|++..+  ...+||+++.+|++||||.|||++++..
T Consensus        17 ~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~   79 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR   79 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCC
T ss_pred             CeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCc
Confidence            357999999999999999999999999986432  2478999999999999999999987653

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.2e-15  Score=100.68  Aligned_cols=57  Identities=33%  Similarity=0.721  Sum_probs=50.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ..|+|||+|.++.++||+|++||+|.|+..  .+++||.++.  +|+.||||.+||++++.
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNN--TEGDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCC--CSSSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEE--cCCCcEEEEECCCCCEEEEehHHeEECcc
Confidence            478999999999999999999999999743  5678999986  68999999999998754

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.55  E-value=2.8e-15  Score=96.11  Aligned_cols=53  Identities=19%  Similarity=0.431  Sum_probs=47.4

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ++|+|||.++.++||+|++||+|.|+++.+++||.++.. +   |+.|+||++||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~Ww~~~~~-~---g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSEIHWWRVQDK-N---GHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSCSSCEEEECT-T---SCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcCCCeEEEEeC-C---CCEEEEeHHHEeC
Confidence            479999999999999999999999999999999999743 2   4589999999974

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=9.7e-16  Score=103.26  Aligned_cols=58  Identities=28%  Similarity=0.634  Sum_probs=48.7

Q ss_pred             ccEEEEeccccCCCCC-CCccCCCCEEEEccccC---CCCCeEEEee-CCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGD-ELSFQPGDIIMVPVKQN---AEPGWLAGEL-RGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~-eLs~~~Gd~v~v~~~~~---~~~~W~~g~~-~g~~G~~P~~yv~~~   95 (290)
                      ...++|||+|.++..+ ||+|++||+|.|+...+   .+++||.|+. +|++|+||+|||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            4579999999998765 99999999999985432   2458999987 899999999999864

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.1e-15  Score=98.43  Aligned_cols=54  Identities=30%  Similarity=0.683  Sum_probs=47.9

Q ss_pred             EEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          40 RYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        40 ~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      .|+|||+|.++.++||+|++||+|.|+..  .+++||.++.  +|++||||.|||+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~--~~~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNS--SEGDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEC--SSCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEe--cCCCCEEEEECCCCCEEEEeHHHeEEC
Confidence            47899999999999999999999999743  5678999886  899999999999864

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4.6e-15  Score=96.83  Aligned_cols=56  Identities=25%  Similarity=0.590  Sum_probs=50.8

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      .++|+|||.++.++||+|++||+|.|+++.+++||.++...+   |+.|+||++||+++
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~---g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGDWWEARSLTT---GETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSCSEEEEEETTT---TEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecCCCCEEEEECCC---CCEEEEeHHHeEEC
Confidence            368999999999999999999999999999999999998654   45899999999874

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=3.5e-15  Score=102.00  Aligned_cols=62  Identities=29%  Similarity=0.598  Sum_probs=51.7

Q ss_pred             CCCceEEeccCCCC-CCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         217 KPEIATVLAPYTAT-SSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       217 ~~~~~~a~~dy~~~-~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ....++|+|||.++ .++||+|++||+|.|+.. ..++||.|++..++   +.||||++||+.+...
T Consensus         6 ~~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~~~gW~~g~~~~~g---~~G~fP~nyVe~i~~p   69 (72)
T d1spka_           6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTK---ARGWFPSSYTKLLSGP   69 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBTTEEEEEETTTC---CEEEEEGGGCEECSSC
T ss_pred             CCCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeecCCCeEEEEECCCC---CEEEEchhhEEECCCC
Confidence            35679999999985 578999999999999865 56789999986543   4899999999998653

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=9.8e-16  Score=105.98  Aligned_cols=60  Identities=30%  Similarity=0.764  Sum_probs=53.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+++||+|++.     ++.||||++||+++....
T Consensus        10 ~~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~W~~g~~~-----g~~G~~P~~yv~~i~~~~   69 (76)
T d1ujya_          10 QLIVKARFNFKQTNEDELSVCKGDIIYVTRVEEGGWWEGTLN-----GRTGWFPSNYVREIKSSE   69 (76)
T ss_dssp             CEEEECCSCBCCSSTTSCCBCSSCCEEESSCCSSSCEEEEET-----TEEEEECTTTSEECCHHH
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEeEEcCCCEEEEEEC-----CcEEEEchHHEEECCCCC
Confidence            457899999999999999999999999999999999999975     348999999999986543

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.8e-15  Score=100.46  Aligned_cols=59  Identities=36%  Similarity=0.790  Sum_probs=51.6

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ....++|+|||.++.++||+|++||+|.|+++ +++||++++.  |   +.||||++||+.+...
T Consensus         9 ~~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~-~~~ww~g~~~--g---~~G~fP~~yve~i~~~   67 (74)
T d1j3ta_           9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQ-QENWWFGEVH--G---GRGWFPKSYVKIIPGS   67 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEE-CSSEEEEEST--T---CCCEEEGGGEEECCCS
T ss_pred             CCeEEEEccCCCCCCCCEecCCCCCEEEEEEc-cCCeEEEEEC--C---cEEEEchhhEEECCCC
Confidence            35569999999999999999999999999998 5689999875  3   3899999999998654

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.4e-15  Score=99.49  Aligned_cols=55  Identities=29%  Similarity=0.755  Sum_probs=50.1

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..++|+|||.++.++||+|++||+|.|+++.+++||.|+..  |   +.||||++||+++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~Ww~~~~~--g---~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESGWWFCQMK--A---KRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTSCCEEEEC--C---CCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecCCCeEEEEEC--C---CCcEEcHhHEEEC
Confidence            35899999999999999999999999999999999999975  3   3799999999875

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1e-14  Score=100.26  Aligned_cols=58  Identities=16%  Similarity=0.328  Sum_probs=51.6

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee------CCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL------RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~------~g~~G~~P~~yv~~~~~~   98 (290)
                      .+++|||+|.+..++||+|++||+|.|++.  .+++||.++.      +|++||||.+||+++..+
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~--~~~~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~p   71 (74)
T d1wfwa_           8 STMTVIKDYYALKENEICVSQGEVVQVLAV--NQQNMCLVYQPASDHSPAAEGWVPGSILAPFSGP   71 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEE--CTTSEEEEEECSCSSSSSEEEEEEGGGCCBCCST
T ss_pred             CEEEEeEEECCCCCCCccCccCCEEEEEEE--cCCCCEEEEeCccCCcCCeeeEEchHHeEECCCC
Confidence            579999999999999999999999999754  5788999975      378999999999988754

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.5e-15  Score=106.10  Aligned_cols=62  Identities=26%  Similarity=0.443  Sum_probs=51.1

Q ss_pred             CCccEEEEeccccCCC------CCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          36 SEYRRYRAIYEFVSRN------GDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~------~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      .....|+|+|||.++.      ++||+|++||+|.|+.. .+.++||.++. +|++||||.|||+.+...
T Consensus        15 ~~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~-~~~~gW~~~~~~~G~~G~~P~nyve~~~~~   83 (96)
T d1wiea_          15 GKVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGD-MDEDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             SCEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESS-CCSSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CCceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEe-eCCCceEEEEeCCCCEEEEehHHeEECCCc
Confidence            3457899999998753      58999999999999743 35567999985 899999999999988654

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2e-15  Score=102.92  Aligned_cols=59  Identities=31%  Similarity=0.593  Sum_probs=51.0

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-CCeeeeccCCcccCCccC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-~g~~G~~P~~yv~~~~~~   98 (290)
                      ..+++|||+|.++.++||+|++||+|.|++.  .+++||.|++ +++.||||.+||+.+...
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~--~~~~Ww~g~~~~~~~G~fP~~yv~~~~~~   65 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEK--QEGGWWRGDYGGKKQLWFPSNYVEEMVNP   65 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCC--BTTTEECCBCSSCCSCCEETTTCCSCSCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEe--cCCCEEEEEECCeEEEEEchHHeEEcCCc
Confidence            3579999999999999999999999999753  5789999987 555669999999988654

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=6.3e-15  Score=99.48  Aligned_cols=57  Identities=30%  Similarity=0.619  Sum_probs=48.5

Q ss_pred             ccEEEEeccccC------CCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVS------RNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~------~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~   95 (290)
                      .++++|+++|.+      +..+||+|++||+|.|+.. ..+++||.|++  +|++||||+|||++.
T Consensus         4 ~Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~-~~~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           4 MPKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKA-EAEHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CCEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEEC-CTTCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CCcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEE-ecCCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            467888888876      6789999999999999743 35679999997  799999999999875

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.8e-15  Score=102.91  Aligned_cols=58  Identities=33%  Similarity=0.692  Sum_probs=51.1

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee-----CCeeeeccCCcccCCccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL-----RGQTGWFPESYVEPCDET   98 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~-----~g~~G~~P~~yv~~~~~~   98 (290)
                      .+++|||+|.++.++||+|++||+|.|+..  .+++||+|++     .+++||||.+||+.+...
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~--~~~~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~   70 (80)
T d1ue9a_           8 EIAQVTSAYVASGSEQLSLAPGQLILILKK--NTSGWWQGELQARGKKRQKGWFPASHVKLLGPS   70 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEE--CSSSEEEEEECSCCSSCCEEEEETTSEEECCSC
T ss_pred             CEEEECcCCCCCCCCEeeEcCCCEEEEEEE--eCCCeEEEEEccCCCCCCEeEEEheeEEECCCC
Confidence            579999999999999999999999999754  5789999986     456999999999987654

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.7e-15  Score=98.01  Aligned_cols=58  Identities=26%  Similarity=0.552  Sum_probs=52.2

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      .++|+|||+++.++||+|++||+|.|+++.+++||.++...+|   +.||||++||+++.+
T Consensus         4 ~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~~~g---~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           4 TFVALYDYESRTETDLSFKKGERLQIVNNTEGDWWLAHSLSTG---QTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEESSCBCCCSSSBCCBCTTCEEEESCCCSSSEEEEEETTTC---CEEEEEGGGEEETTS
T ss_pred             EEEECccCCCcCcCCcCCCCCCEEEEEEEcCCCcEEEEECCCC---CEEEEehHHeEECcc
Confidence            4789999999999999999999999999999999999987554   489999999998654

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=4.1e-15  Score=96.65  Aligned_cols=53  Identities=28%  Similarity=0.696  Sum_probs=45.0

Q ss_pred             EEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccC
Q psy7076          41 YRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP   94 (290)
Q Consensus        41 ~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~   94 (290)
                      ++|||+|.++.++||+|++||+|.|+.. ...++||.+..  +|++|+||+|||+.
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~-~~~~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVAR-DTGSGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEEC-CSSSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEE-ecCCCcEEEeCCCCceEEEEehhhEEC
Confidence            6899999999999999999999999754 34556776654  89999999999973

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=1.5e-14  Score=94.40  Aligned_cols=53  Identities=34%  Similarity=0.755  Sum_probs=47.6

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEcC--CCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKKT--TTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~--~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      |+|+|+|.++.++||+|++||+|.|+++.  +.+||.+++.     |++|+||++||+.|
T Consensus         4 ~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~~~~W~~~~~~-----g~~G~vP~~yve~i   58 (58)
T d1oota_           4 AVALYSFAGEESGDLPFRKGDVITILKKSDSQNDWWTGRVN-----GREGIFPANYVELV   58 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSCTTSEEEEEET-----TEEEEEEGGGEEEC
T ss_pred             EEEccCCCCCCCCCccCCCCCEEEEEEeecCCCCEEEEEEC-----CcEEEEcHHHEEEC
Confidence            89999999999999999999999999985  4589999875     34899999999975

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.51  E-value=8e-15  Score=98.67  Aligned_cols=57  Identities=25%  Similarity=0.665  Sum_probs=48.2

Q ss_pred             CCceEEeccCCCCCCC-ceecCCCCEEEEEEcCC-----CCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         218 PEIATVLAPYTATSSE-QLSLSRGQLIMIRKKTT-----TGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~-eLs~~~Gd~i~v~~~~~-----~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..+++|+|+|.++.++ ||+|++||+|.|+++.+     .|||.|+..    .|+.|+||++||+.|
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~----~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTK----NGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECT----TSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeC----CCCEEEEEHHHEEEC
Confidence            4579999999998875 99999999999998753     589999853    245899999999975

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.2e-14  Score=97.70  Aligned_cols=60  Identities=27%  Similarity=0.653  Sum_probs=51.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCC--CCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT--TGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~--~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+  .|||.++.. +   |+.|+||++||+++...
T Consensus         6 l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~~~~Ww~~~~~-~---G~~G~vP~~yv~~~~~~   67 (71)
T d1u5sa1           6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNA-R---GQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCTTTCEEEEEET-T---TEEEEEETTSEEECCCS
T ss_pred             cEEEEECccCCCCCCCEeeECCCCEEEEEEcccCCCCeEEEEEC-C---CCEEEEChHHEEECCCC
Confidence            456999999999999999999999999999743  489999864 2   45899999999998764

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.2e-15  Score=105.46  Aligned_cols=59  Identities=34%  Similarity=0.675  Sum_probs=50.7

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEcccc-------------CCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ-------------NAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~-------------~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      .+|+|||+|.++.++||+|++||+|.|+...             ..++|||.|++  +|++||||.|||+.+..
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCC
Confidence            4799999999999999999999999997431             12468999986  89999999999998754

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.9e-14  Score=98.46  Aligned_cols=59  Identities=25%  Similarity=0.572  Sum_probs=51.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC----CCCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT----TTGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~----~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..+++|||||.++.++||+|++||+|.|+++.    ..+||++++.  |   +.||||++||+++...
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~--g---~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVN--G---KKGYVPSNYIRKTESG   75 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESS--S---CEEEEEGGGEEECCSS
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEEC--C---CEEEEehhhEEECCCC
Confidence            45799999999999999999999999999874    4699999864  3   4899999999998754

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=7.4e-15  Score=103.26  Aligned_cols=58  Identities=31%  Similarity=0.592  Sum_probs=49.7

Q ss_pred             ccEEEEeccccCCCCCCCccCCCCEEEEccccC---CCCCeEEEee----------CCeeeeccCCcccCC
Q psy7076          38 YRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQN---AEPGWLAGEL----------RGQTGWFPESYVEPC   95 (290)
Q Consensus        38 ~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~---~~~~W~~g~~----------~g~~G~~P~~yv~~~   95 (290)
                      ..+++|||+|.++.++||+|++||+|.|+....   .++|||.|..          +|++||||+|||+.+
T Consensus        12 ~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          12 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             CEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            468999999999999999999999999985432   3578999975          468999999999865

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.50  E-value=2.5e-14  Score=93.00  Aligned_cols=54  Identities=20%  Similarity=0.550  Sum_probs=46.6

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEcCCC-CeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKKTTT-GWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~-gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      +++|||||.++.++||+|++||+|.|+++.++ +||.++..  |   ++||||++||+++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~~~W~~~~~~--g---~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNHNGEWCEAQTK--N---GQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECTTSSEEEEECS--S---CEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecCCCCEEEEEEC--C---CEeEEchhheEEC
Confidence            47899999999999999999999999988655 57778754  3   4899999999986

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-14  Score=96.51  Aligned_cols=56  Identities=27%  Similarity=0.534  Sum_probs=48.3

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccCCcc
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEPCDE   97 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~~~~   97 (290)
                      ..++|||+|.++.++||+|++||+|.|+..   +++||.+..  +|+.|+||.|||++++.
T Consensus         5 ~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~---~~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEE---SGEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC---CTTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEEEECCcCCCCCcCccCCCCCCEEEEEEE---CCCCEEEEEccCCCEEEEchHHeEECcc
Confidence            568999999999999999999999999742   456887765  79999999999998754

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.1e-14  Score=108.06  Aligned_cols=59  Identities=27%  Similarity=0.558  Sum_probs=53.1

Q ss_pred             CCCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         217 KPEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      .+..++|+|||.++.++||+|++||+|.|+++.++|||+|++.  |   ++||||++||+.+..
T Consensus        13 ~g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~gWw~g~~~--g---~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2          13 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDGWWVIRKD--D---VTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             TCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTSEEEEEET--T---EEEEEEGGGEEETTS
T ss_pred             CCcEEEECcCCCCCCCCEecCCCCCEEEEeEecCCCeEEEEEC--C---eEEEEehhhEEECCC
Confidence            3567899999999999999999999999999999999999975  3   489999999998753

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.3e-14  Score=94.63  Aligned_cols=59  Identities=25%  Similarity=0.562  Sum_probs=51.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++ +++||.++...+|   +.|+||++||+++.+
T Consensus         4 ~~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~-~~~ww~~~~~~~g---~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           4 RIIVVALYDYEAIHHEDLSFQKGDQMVVLEE-SGEWWKARSLATR---KEGYIPSNYVARVDS   62 (65)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEC-CTTEEEEEETTTC---CEEEEEGGGEEETTC
T ss_pred             cEEEEECCcCCCCCcCccCCCCCCEEEEEEE-CCCCEEEEEccCC---CEEEEchHHeEECcc
Confidence            3468899999999999999999999999986 5689999876554   489999999999754

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5.6e-15  Score=99.55  Aligned_cols=59  Identities=22%  Similarity=0.484  Sum_probs=51.6

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      ...++|+|+|.++.++||+|++||+|.|+++.+.+||.++.. .   |+.||||++||+++..
T Consensus         8 ~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~Ww~~~~~-~---g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           8 LKKVVALYDYMPMNANDLQLRKGDEYFILEESNLPWWRARDK-N---GQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSSEECCBCT-T---SCBCCEETTTBCCSCC
T ss_pred             CEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCCeEEEEEC-C---CCEEEEcHHHeEECcC
Confidence            456899999999999999999999999999999999999743 2   4589999999998654

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.9e-14  Score=97.31  Aligned_cols=59  Identities=29%  Similarity=0.536  Sum_probs=50.7

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCC-CCeEEEEEcCCCCCceeeEecCCceEEecCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~-~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~  281 (290)
                      ...++|||+|.++.++||+|++||+|.|+++.+ ++||.+++.  |   +.|+||++||+++...
T Consensus        10 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~W~~g~~~--g---~~G~~P~~yve~i~~p   69 (72)
T d1ugva_          10 FRKAKALYACKAEHDSELSFTAGTVFDNVHPSQEPGWLEGTLN--G---KTGLIPENYVEFLSGP   69 (72)
T ss_dssp             CCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCSSTTEEEEESS--S---CEEEEEGGGEEECCSS
T ss_pred             CEEEEEcccCCCCCCCEecCCCCCEEEEeeccCCCCEEEEEeC--C---CEEEEchHHEEECCCC
Confidence            456999999999999999999999999998754 579999864  3   4899999999998654

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-14  Score=96.87  Aligned_cols=58  Identities=62%  Similarity=1.174  Sum_probs=53.7

Q ss_pred             cceEEEEcccCCCCCCCCceecCCCEEEEEeecCCeEEEEeCCeeEEecCCCeEecCC
Q psy7076         102 VPEYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTIGDRTGLFPSNYVVPYEA  159 (290)
Q Consensus       102 ~~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~~~~W~~~~~~g~~G~~P~~~v~~~~~  159 (290)
                      ....++|+|+|.++.++||+|++||+|.|++++++||.++.+|++||||.+||+++..
T Consensus         7 ~~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~~~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQKDGEWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEEETTEEEECSTTCCEEECGGGCEECCC
T ss_pred             CCcEEEECccCCCCCcCCcCCCCCCEEEEEEecCCEEEEEECCcEEEEchhhEEECCC
Confidence            3567899999999999999999999999998888999999999999999999999864

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=2.7e-14  Score=93.61  Aligned_cols=56  Identities=18%  Similarity=0.486  Sum_probs=51.7

Q ss_pred             eEEEEcccCCCCCCCCceecCCCEEEEEeecCCeEEEEe-CCeeEEecCCCeEecCC
Q psy7076         104 EYYIAAYPYDSTEPGDLTFNQDEVIYVTKKENDWWTGTI-GDRTGLFPSNYVVPYEA  159 (290)
Q Consensus       104 ~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~~~~W~~~~~-~g~~G~~P~~~v~~~~~  159 (290)
                      .+++|+|+|.++..+||+|.+||+|.|++..++||.++. +|+.|+||++||+.+..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~~~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDRRQWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGGCCEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEcCCcEEEEEcCCCEEEECHHHeEECCC
Confidence            478999999999999999999999999988778999987 88999999999999864

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=2.2e-14  Score=92.89  Aligned_cols=53  Identities=26%  Similarity=0.656  Sum_probs=42.6

Q ss_pred             ceEEeccCCCCCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         220 IATVLAPYTATSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       220 ~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      .|+|+|||.++.++||+|++||.|.|+++ .+++||.+++.  |   +.||||++||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~~~~W~~~~~~--g---~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEECDQNWYKAELN--G---KDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC------CCEEEEESS--S---CEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccCCCCeEEEEEC--C---cEEEEehhhEEE
Confidence            38999999999999999999999998886 46788888864  3   489999999974

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=6e-14  Score=100.37  Aligned_cols=62  Identities=18%  Similarity=0.227  Sum_probs=52.9

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCC----CCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTT----TGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~----~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+    .+||+++..  |   ++||||++||+++......
T Consensus        17 ~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~--g---~~G~~P~~yv~~~~~~~~~   82 (92)
T d1ug1a_          17 EKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNG--V---TKGFVYSSFLKPYNPRRSH   82 (92)
T ss_dssp             GGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECS--S---SEEEEEGGGEEECCCCSSC
T ss_pred             CeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEec--c---cEEEEEhhhceecCCcccc
Confidence            356899999999999999999999999999854    689999865  3   3899999999998654443

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.8e-14  Score=93.97  Aligned_cols=53  Identities=19%  Similarity=0.444  Sum_probs=45.5

Q ss_pred             cEEEEeccccCCCCCCCccCCCCEEEEccccCCCCCeEEEee--CCeeeeccCCcccC
Q psy7076          39 RRYRAIYEFVSRNGDELSFQPGDIIMVPVKQNAEPGWLAGEL--RGQTGWFPESYVEP   94 (290)
Q Consensus        39 ~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~--~g~~G~~P~~yv~~   94 (290)
                      ..++|||+|.++.++||+|++||+|.|+..   .++||.+..  +|+.||||++||++
T Consensus         7 ~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~---~~~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQ---SGEWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEC---CSSEEEEEETTTCCEEEEEGGGEEE
T ss_pred             cEEEECCCCCcCCcCCcCCCCCCEEEEeEE---cCCCEEEEeccCCeEeEEcHHHEEe
Confidence            479999999999999999999999999743   345776654  79999999999974

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=3.9e-14  Score=91.93  Aligned_cols=54  Identities=20%  Similarity=0.527  Sum_probs=45.4

Q ss_pred             eEEeccCCCCCCCceecCCCCEEEEEEcCCC-CeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         221 ATVLAPYTATSSEQLSLSRGQLIMIRKKTTT-GWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       221 ~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~-gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ++|||||.++.++||+|++||+|.|+++.+. +||.++...+   |+.|+||++||++
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~~~w~~~~~~~~---g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTT---GETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSSSSEEEEEETTT---TEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecCCCcEEEeCCCC---ceEEEEehhhEEC
Confidence            6899999999999999999999999998654 5666665433   5689999999974

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1e-13  Score=91.80  Aligned_cols=56  Identities=21%  Similarity=0.580  Sum_probs=48.8

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEE
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKV  277 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~  277 (290)
                      ..+++|+|||.++.++||+|++||+|.|+++.+ +||.++...+|   +.||||++||++
T Consensus         6 ~~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~-~ww~~~~~~~g---~~G~~P~~yV~~   61 (62)
T d2iima1           6 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG-EWWKAQSLTTG---QEGFIPFNFVAK   61 (62)
T ss_dssp             TCEEEESSCBCCCSTTBCCBCTTCEEEEEECCS-SEEEEEETTTC---CEEEEEGGGEEE
T ss_pred             CcEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC-CCEEEEeccCC---eEeEEcHHHEEe
Confidence            457999999999999999999999999999864 68888876544   489999999986

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5e-15  Score=100.91  Aligned_cols=61  Identities=28%  Similarity=0.589  Sum_probs=53.2

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceEEecCCC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVKVMGGGG  282 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~  282 (290)
                      ..+++|+|+|.++.++||+|++||+|.|+++.+++||.|++.+  +  ..|+||++||+++...+
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~Ww~g~~~~--~--~~G~fP~~yv~~~~~~~   66 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEGGWWRGDYGG--K--KQLWFPSNYVEEMVNPE   66 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTTTEECCBCSS--C--CSCCEETTTCCSCSCCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCCCEEEEEECC--e--EEEEEchHHeEEcCCcc
Confidence            4569999999999999999999999999999999999998652  2  35899999999986544

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.6e-14  Score=94.15  Aligned_cols=55  Identities=18%  Similarity=0.499  Sum_probs=47.7

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEcCC---CCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKKTT---TGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~~---~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ..++|+|||.++.++||+|++||+|.|+++.+   .|||.|++.     |+.|+||++||+.+
T Consensus         5 g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~-----g~~G~~P~~yv~~~   62 (63)
T d1ycsb2           5 GVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLN-----DKEGYVPRNLLGLY   62 (63)
T ss_dssp             GEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEET-----TEEEEEEGGGEECC
T ss_pred             CEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEEC-----CeEEEEchHHhEeC
Confidence            35889999999999999999999999998753   479999975     34899999999864

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=4.9e-14  Score=103.37  Aligned_cols=64  Identities=17%  Similarity=0.291  Sum_probs=52.5

Q ss_pred             CCCccEEEEeccccCCCCCCCccCCCCEEEEcccc-CCCCCeEEEeeC--------CeeeeccCCcccCCccC
Q psy7076          35 VSEYRRYRAIYEFVSRNGDELSFQPGDIIMVPVKQ-NAEPGWLAGELR--------GQTGWFPESYVEPCDET   98 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~eLs~~~Gd~v~v~~~~-~~~~~W~~g~~~--------g~~G~~P~~yv~~~~~~   98 (290)
                      .....+++|||+|.+..++||+|++||+|.|+.+. ..+.+||.|+..        |+.||||.|||+.+...
T Consensus        18 ~~~~~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~   90 (106)
T d1i1ja_          18 SHPISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   90 (106)
T ss_dssp             CSCSEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             CceeeEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcccc
Confidence            34456899999999999999999999999998542 245789999864        46899999999976543

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.8e-13  Score=93.11  Aligned_cols=59  Identities=20%  Similarity=0.420  Sum_probs=50.1

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC-CCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-TTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      +..|+|+|||.++.++||+|++||+|.|+++. +.+||.+++. +   |+.|+||++||+++..
T Consensus         6 g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~W~~~~~~-~---g~~G~~P~~yve~~~~   65 (71)
T d1k9aa1           6 GTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDPNWYKAKNK-V---GREGIIPANYVQKREG   65 (71)
T ss_dssp             TCEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSTTEEEEECT-T---CCEEEEEGGGEEECCC
T ss_pred             CCEEEEccCCCCCCCCCccCCCCCEEEEeEeccCCCEEEEEeC-C---CCEEEEchHHeEEccc
Confidence            45599999999999999999999999999875 5578888753 2   3489999999999754

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.8e-14  Score=99.77  Aligned_cols=60  Identities=25%  Similarity=0.493  Sum_probs=51.5

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC---------------CCCeEEEEEcCCCCCceeeEecCCceEEecC
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT---------------TTGWWEGELQAKGKKRQVGWFPASYVKVMGG  280 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~---------------~~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~  280 (290)
                      +..++|||+|.++.++||+|++||+|.|+.+.               ++|||+|++..+   |+.||||++||+.+..
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~---g~~G~FP~nYVe~i~~   77 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETT---GERGDFPGTYVEYIGR   77 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTT---TEEEEEEGGGEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCC---CcEeeEehhhEEEcCC
Confidence            34589999999999999999999999999752               468999998654   4589999999999864

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.4e-13  Score=100.86  Aligned_cols=63  Identities=27%  Similarity=0.470  Sum_probs=53.3

Q ss_pred             CceEEeccCCCCCCCceecCCCCEEEEEEc---CCCCeEEEEEcCCC---CCceeeEecCCceEEecCC
Q psy7076         219 EIATVLAPYTATSSEQLSLSRGQLIMIRKK---TTTGWWEGELQAKG---KKRQVGWFPASYVKVMGGG  281 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~---~~~gW~~g~~~~~g---~~~~~G~fP~~~v~~~~~~  281 (290)
                      ..++|+|+|.++.++||+|++||+|.|+++   .+.+||.|++.++.   ..++.||||++||+++...
T Consensus        22 ~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~   90 (106)
T d1i1ja_          22 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   90 (106)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEcccc
Confidence            458999999999999999999999999987   45789999987642   1246899999999987543

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.7e-13  Score=95.29  Aligned_cols=58  Identities=31%  Similarity=0.665  Sum_probs=51.9

Q ss_pred             ceEEEEcccCCCCCCCCceecCCCEEEEEee---cCCeEEEEeCCeeEEecCCCeEecCCC
Q psy7076         103 PEYYIAAYPYDSTEPGDLTFNQDEVIYVTKK---ENDWWTGTIGDRTGLFPSNYVVPYEAQ  160 (290)
Q Consensus       103 ~~~~~a~~~y~~~~~~eL~~~~G~~v~v~~~---~~~W~~~~~~g~~G~~P~~~v~~~~~~  160 (290)
                      ...++|+|+|.++..+||+|++||+|.|+++   +.+||.++.+|+.||||.+||+.+...
T Consensus         5 ~~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~~~~w~~~~~~g~~G~~P~~Yve~~~~~   65 (93)
T d1uffa_           5 SSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVGEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCCSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CeEEEECccCCCCCCCCccCcCCCEEEEEEeccCCCCEEEEEeCCcEEEEchHHEEECCCC
Confidence            3468999999999999999999999999976   356999999999999999999998753

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.41  E-value=1.4e-13  Score=96.64  Aligned_cols=62  Identities=21%  Similarity=0.404  Sum_probs=51.0

Q ss_pred             CCceEEeccCCCCCCCceecCCCCEEEEEEcC-----CCCeEEEEEcCC-----CCCceeeEecCCceEEec
Q psy7076         218 PEIATVLAPYTATSSEQLSLSRGQLIMIRKKT-----TTGWWEGELQAK-----GKKRQVGWFPASYVKVMG  279 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~eLs~~~Gd~i~v~~~~-----~~gW~~g~~~~~-----g~~~~~G~fP~~~v~~~~  279 (290)
                      ...++|+|+|.++.++||+|++||+|.|+.+.     ++|||.|.....     ...|+.||||+|||+.|.
T Consensus        12 ~~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          12 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             CEEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            34689999999999999999999999999864     468999987531     123468999999999863

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=3.4e-13  Score=90.79  Aligned_cols=55  Identities=31%  Similarity=0.676  Sum_probs=45.8

Q ss_pred             eEEeccCCC------CCCCceecCCCCEEEEEEc-CCCCeEEEEEcCCCCCceeeEecCCceEEe
Q psy7076         221 ATVLAPYTA------TSSEQLSLSRGQLIMIRKK-TTTGWWEGELQAKGKKRQVGWFPASYVKVM  278 (290)
Q Consensus       221 ~~a~~dy~~------~~~~eLs~~~Gd~i~v~~~-~~~gW~~g~~~~~g~~~~~G~fP~~~v~~~  278 (290)
                      ++|+++|.+      +..+||+|++||+|.|++. .++|||.|++..+   |+.||||++||++.
T Consensus         7 ~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~~~gWw~G~~~~~---g~~G~fP~nyVePy   68 (69)
T d1gcqc_           7 MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEAEHNWWEGRNTAT---NEVGWFPCNRVHPY   68 (69)
T ss_dssp             EEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCTTCSEEEEEETTT---TEEEEEEGGGEEEC
T ss_pred             EEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEecCCCEEEEEECCC---CCEEEEeHHHEEEc
Confidence            567777754      7789999999999999986 5679999998654   45899999999974

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.5e-13  Score=97.63  Aligned_cols=64  Identities=23%  Similarity=0.477  Sum_probs=50.4

Q ss_pred             CCCceEEeccCCCCC------CCceecCCCCEEEEEEcCC-CCeEEEEEcCCCCCceeeEecCCceEEecCCCcc
Q psy7076         217 KPEIATVLAPYTATS------SEQLSLSRGQLIMIRKKTT-TGWWEGELQAKGKKRQVGWFPASYVKVMGGGGIS  284 (290)
Q Consensus       217 ~~~~~~a~~dy~~~~------~~eLs~~~Gd~i~v~~~~~-~gW~~g~~~~~g~~~~~G~fP~~~v~~~~~~~~~  284 (290)
                      ...+|+|+|||+++.      ++||+|++||+|.|+.+.+ ++||.++.. .|   +.||||++||+++......
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~gW~~~~~~-~G---~~G~~P~nyve~~~~~~~~   86 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGFYEGELL-DG---QRGLVPSNFVDFVQDNESR   86 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSSCCEEEET-TC---CBCBCCTTSEECCCSCCCC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCCceEEEEeC-CC---CEEEEehHHeEECCCcccc
Confidence            356799999998764      4899999999999998755 568877654 23   4799999999998765543

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.35  E-value=3.1e-13  Score=96.47  Aligned_cols=56  Identities=21%  Similarity=0.381  Sum_probs=48.7

Q ss_pred             CCCccEEEEeccccCCCCCC-------CccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCcc
Q psy7076          35 VSEYRRYRAIYEFVSRNGDE-------LSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYV   92 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~e-------Ls~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv   92 (290)
                      .+....++|+|||.+..+++       |+|++||+|.|+..  .+++||.|++   +|+.||||++|+
T Consensus        18 ~p~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~--~d~~WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          18 KPVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEK--FNNDWWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             SCCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEE--CSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             CCccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeee--eCCCceEEEEcCCCCCEEEecCcHH
Confidence            34557899999999999998       99999999999754  6789999998   689999999874

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.33  E-value=1.4e-13  Score=99.46  Aligned_cols=58  Identities=17%  Similarity=0.404  Sum_probs=49.2

Q ss_pred             ceEEeccCCCCCC-----CceecCCCCEEEEEEcCCCCeEEEEEcCCC-CCceeeEecCCceEE
Q psy7076         220 IATVLAPYTATSS-----EQLSLSRGQLIMIRKKTTTGWWEGELQAKG-KKRQVGWFPASYVKV  277 (290)
Q Consensus       220 ~~~a~~dy~~~~~-----~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g-~~~~~G~fP~~~v~~  277 (290)
                      +++|+|||.++..     .||+|++||+|.|+++.+.+||.|+..+.+ ..|+.||||++||++
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSSEEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCceEEEEEccCCCCCCCEeEEeccceee
Confidence            5789999998763     489999999999999999999999985432 245689999999975

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.31  E-value=7.3e-13  Score=94.48  Aligned_cols=56  Identities=20%  Similarity=0.535  Sum_probs=48.9

Q ss_pred             CCceEEeccCCCCCCCc-------eecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCce
Q psy7076         218 PEIATVLAPYTATSSEQ-------LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV  275 (290)
Q Consensus       218 ~~~~~a~~dy~~~~~~e-------Ls~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v  275 (290)
                      ..+++|+|||++..+++       |+|++||+|.|+++.+++||.|++..++  +..|+||++++
T Consensus        21 ~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~WW~gr~~~~~--g~~G~~PS~~~   83 (96)
T d1t0ha_          21 AFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNNDWWIGRLVKEG--CEIGFIPSPVK   83 (96)
T ss_dssp             CEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSSEEEEEESSTT--CCCEEEECHHH
T ss_pred             cEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCCceEEEEcCCC--CCEEEecCcHH
Confidence            45689999999999888       9999999999999999999999996432  35899999874

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1.9e-13  Score=98.79  Aligned_cols=54  Identities=20%  Similarity=0.424  Sum_probs=45.8

Q ss_pred             EEEEeccccCCC-----CCCCccCCCCEEEEccccCCCCCeEEEee------CCeeeeccCCcccCC
Q psy7076          40 RYRAIYEFVSRN-----GDELSFQPGDIIMVPVKQNAEPGWLAGEL------RGQTGWFPESYVEPC   95 (290)
Q Consensus        40 ~~~al~~~~~~~-----~~eLs~~~Gd~v~v~~~~~~~~~W~~g~~------~g~~G~~P~~yv~~~   95 (290)
                      .++|||||.++.     ..||+|++||+|.|+..  .+++||.|+.      +|++||||+|||+..
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~--~d~~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDA--GDEEWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEEC--CSSSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeee--ccCceEEEEEccCCCCCCCEeEEeccceeee
Confidence            478999999975     35899999999999753  6789999974      689999999999754

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=1.9e-11  Score=94.71  Aligned_cols=56  Identities=16%  Similarity=0.328  Sum_probs=48.4

Q ss_pred             CCccEEEEeccccCCCCCC-------CccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCccc
Q psy7076          36 SEYRRYRAIYEFVSRNGDE-------LSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYVE   93 (290)
Q Consensus        36 ~~~~~~~al~~~~~~~~~e-------Ls~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv~   93 (290)
                      +....++|+|||.+...++       |+|++||+|.|+..  .+++||.|++   +|+.||||++|+.
T Consensus        21 ~~~f~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~--~d~~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          21 PVAFAVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEK--YNNDWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             CCCEEEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEE--EETTEEEEEESSTTCCCEEEECHHHH
T ss_pred             CccEEEEEeeeeCCccCCcCCcccccccCcCCCEEEEeec--cCCCcEEEEEcCCCCceeEeCCchhh
Confidence            3345799999999999988       99999999999755  5789999997   7999999998753

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.09  E-value=3.1e-11  Score=93.44  Aligned_cols=55  Identities=20%  Similarity=0.494  Sum_probs=48.1

Q ss_pred             ceEEeccCCCCCCCc-------eecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCceE
Q psy7076         220 IATVLAPYTATSSEQ-------LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYVK  276 (290)
Q Consensus       220 ~~~a~~dy~~~~~~e-------Ls~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v~  276 (290)
                      +++|+|||.+...++       |+|++||+|.|+++.+++||.|++.++  .|+.||||++|+.
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~WW~gr~~~~--~g~~G~iPS~~~~   86 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNNDWWIGRLVKE--GCEIGFIPSPLRL   86 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETTEEEEEESST--TCCCEEEECHHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCCcEEEEEcCC--CCceeEeCCchhh
Confidence            589999999999887       999999999999999999999998643  2458999997653

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.93  E-value=2.7e-10  Score=86.54  Aligned_cols=56  Identities=18%  Similarity=0.336  Sum_probs=48.1

Q ss_pred             CCCccEEEEeccccCCCCCC-------CccCCCCEEEEccccCCCCCeEEEee---CCeeeeccCCcc
Q psy7076          35 VSEYRRYRAIYEFVSRNGDE-------LSFQPGDIIMVPVKQNAEPGWLAGEL---RGQTGWFPESYV   92 (290)
Q Consensus        35 ~~~~~~~~al~~~~~~~~~e-------Ls~~~Gd~v~v~~~~~~~~~W~~g~~---~g~~G~~P~~yv   92 (290)
                      ++....++|+|+|.+..+++       |+|++||+|.|+..  .+.+||.|++   +|+.|+||++|+
T Consensus        20 kp~~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~--~d~~WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          20 KPVAFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEK--YSNDWWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             SCCCEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEE--CSSSEEEEEESSTTCCCEEEECHHH
T ss_pred             CCceEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEec--cCCCcEEEEeccCCCceeccCchHH
Confidence            45567899999999998888       89999999999754  6789999996   678999999884

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=1.2e-09  Score=82.95  Aligned_cols=55  Identities=18%  Similarity=0.481  Sum_probs=47.3

Q ss_pred             CceEEeccCCCCCCCc-------eecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCce
Q psy7076         219 EIATVLAPYTATSSEQ-------LSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV  275 (290)
Q Consensus       219 ~~~~a~~dy~~~~~~e-------Ls~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v  275 (290)
                      ..++|+|||++..+++       |+|++||+|.|+++.+++||.|++...+  +..|+||+.|+
T Consensus        24 ~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~WW~~r~~~~~--~~~G~iPs~~~   85 (136)
T d1vyua1          24 FAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSNDWWIGRLVKEG--GDIAFIPSPQR   85 (136)
T ss_dssp             EEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSSEEEEEESSTT--CCCEEEECHHH
T ss_pred             EEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCCcEEEEeccCC--CceeccCchHH
Confidence            3488999999888777       9999999999999999999999986543  34899999874

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.21  E-value=0.009  Score=39.08  Aligned_cols=41  Identities=15%  Similarity=0.226  Sum_probs=35.2

Q ss_pred             CCCceecCCCCEEEEEEcCCCCeEEEEEcCCCCCceeeEecCCce
Q psy7076         231 SSEQLSLSRGQLIMIRKKTTTGWWEGELQAKGKKRQVGWFPASYV  275 (290)
Q Consensus       231 ~~~eLs~~~Gd~i~v~~~~~~gW~~g~~~~~g~~~~~G~fP~~~v  275 (290)
                      +..+|+++.||.|.|+...+.+-|.++..    .|..|+++.++|
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~k~LcRN~----~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDTKVLCRNE----EGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSSEEEEEET----TTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCCCCeEEEEcC----CCcEEEEEeeee
Confidence            45799999999999999999999999964    356899988765

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0097  Score=38.92  Aligned_cols=38  Identities=16%  Similarity=0.204  Sum_probs=33.4

Q ss_pred             CCCceecCCCEEEEEee-cCCeEEEEe-CCeeEEecCCCe
Q psy7076         117 PGDLTFNQDEVIYVTKK-ENDWWTGTI-GDRTGLFPSNYV  154 (290)
Q Consensus       117 ~~eL~~~~G~~v~v~~~-~~~W~~~~~-~g~~G~~P~~~v  154 (290)
                      ..+|.++.|+.|.|++. +.+-|.|++ .|+-|+++..+|
T Consensus        36 ~~dL~vk~GE~ldVIr~t~~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          36 TRDLQVKPGESLEVIQTTDDTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             TTBCCCCTTCBCEEEEESSSSEEEEEETTTEEEEEEGGGS
T ss_pred             cccCCcCCCCEEEEEEeCCCCeEEEEcCCCcEEEEEeeee
Confidence            45899999999999998 678899998 899999998765