Psyllid ID: psy7309

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450----
Protein Sequence
MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSGLSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVLN
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHcccccccccccccccHHHHcccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEcccccccccccccccccccEEEEcccccEEEccccccHHHHHHHHHccccccEEEEEEEEEEEccccccccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHccccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccccHHHEEEcccccEEEccccccccccHHHccccHHcccccccccccccccccccccccHEEEEEEEccHHHHHccccHHHHHHccccccccEEEEEHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccHHcHcccHHHHHHHHccccccccccccccccccccHHHHcccccHHHHHHHHHHHcccccccccHHHHHcccHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHcccccccccccHHHHHHHHHHHHHHHHHHcccEEccccccccccccccccccEEEEEccccEEEEcccccccHHHHHHEEccccEEEEEEEEccEEcccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccEEEEcccHHcc
Coil and Loop (DISEMBL)
MGRAWRLLREIIEGLSHihsqgiihrdlkpvnifidyedhvkigdfGLATNILQKHAGplareltgyilppidstafyshdtshtgqvgtalyaapeldshgvkamynqftpqnyfsKQQKAFYVEILRVLWGYLKAevykdrpkTLEELKHNirrengpstgsNVQKSLQKfqksppsvyrEWRSSFEWSTVRNNIKSNFQHFLILIHQQKwclnhdpskrpsseqnlcqpislegsssglsvlgseqlltcdhippplvgetVLQDMVRQtlsnpqskgyKYLVAACFnqkvspadditydislsrsanfslLESTGDKLRRIFQlhggahfqtplltplnsltatsetTASVMTrggsivtlphdlripFARYlaqngsivsmkRYCIDRVFRerrvlgfhprelYECAFDivtntpgvltmgSLRRClmgsfrrfnygnisfaphprvln
Flexible Loop (DISEMBL)
MGRAWRLLREIIEGLShihsqgiihrdLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELkhnirrengpstgsnvqKSLQkfqksppsvyREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSGLSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARylaqngsivsmKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRfnygnisfaphprvln
Low Complexity Region (SEG)
MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIslegsssglsvlgseqllTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVLN
Disordered region (IsUnstruct)
***AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD*************************************VYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLN***************************VLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFA*******
Disordered Region (DISOPRED)
MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH***************************HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQ****************************HFLILIHQQKW************************************LLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERR***FHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL*
Disordered Region (DISEMBL)
MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG***********************EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHD**********LCQPISLEGSSSGLSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVLN
Disordered Region (DISPRO)
MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHA***********************DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSGLSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHP**L*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSGLSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	454
UNIPROTKB|H0YME5	1427	EIF2AK4 "Eukaryotic translatio	0.356	0.113	0.449	2.2e-60
UNIPROTKB|Q9P2K8	1649	EIF2AK4 "Eukaryotic translatio	0.356	0.098	0.449	4.2e-60
UNIPROTKB|E2RS10	1651	EIF2AK4 "Uncharacterized prote	0.359	0.098	0.443	7.5e-59
UNIPROTKB|E1BAL6	1649	EIF2AK4 "Uncharacterized prote	0.356	0.098	0.431	5.4e-58
MGI|MGI:1353427	1648	Eif2ak4 "eukaryotic translatio	0.356	0.098	0.426	3.7e-57
RGD|1311439	1572	Eif2ak4 "eukaryotic translatio	0.356	0.103	0.426	4e-57
UNIPROTKB|D4A7V9	1649	Eif2ak4 "Protein Eif2ak4" [Rat	0.356	0.098	0.426	4.8e-57
FB|FBgn0019990	1589	Gcn2 "Gcn2" [Drosophila melano	0.411	0.117	0.361	2.9e-54
DICTYBASE|DDB_G0276829	1358	ifkB "PEK family protein kinas	0.341	0.114	0.325	6.6e-29
SGD|S000002691	1659	GCN2 "Protein kinase" [Sacchar	0.191	0.052	0.535	1.7e-28

UNIPROTKB|H0YME5 EIF2AK4 "Eukaryotic translation initiation factor 2-alpha kinase 4" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 2.2e-60, Sum P(3) = 2.2e-60
 Identities = 76/169 (44%), Positives = 108/169 (63%)

Query:   256 IPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLL 315
             +PPP + E+ L +++  TL+N   K Y+ ++A  F+Q++SPA D TYD  + +  NFS+ 
Sbjct:   779 LPPPQMEESELHEVLHHTLTNVDGKAYRTMMAQIFSQRISPAIDYTYDSDILKG-NFSIR 837

Query:   316 -----ESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLR 370
                  +   + + RIF+ HG     TPLL P N         A  M   G +V LP DLR
Sbjct:   838 TAKMQQHVCETIIRIFKRHGAVQLCTPLLLPRNRQIYEHNEAALFMDHSGMLVMLPFDLR 897

Query:   371 IPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNT 419
             IPFARY+A+N +I+++KRYCI+RVFR R++  FHP+EL ECAFDIVT+T
Sbjct:   898 IPFARYVARN-NILNLKRYCIERVFRPRKLDRFHPKELLECAFDIVTST 945

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|Q9P2K8 EIF2AK4 "Eukaryotic translation initiation factor 2-alpha kinase 4" [Homo sapiens (taxid:9606)]

 Score = 367 (134.2 bits), Expect = 4.2e-60, Sum P(3) = 4.2e-60
 Identities = 76/169 (44%), Positives = 108/169 (63%)

Query:   256 IPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLL 315
             +PPP + E+ L +++  TL+N   K Y+ ++A  F+Q++SPA D TYD  + +  NFS+ 
Sbjct:  1001 LPPPQMEESELHEVLHHTLTNVDGKAYRTMMAQIFSQRISPAIDYTYDSDILKG-NFSIR 1059

Query:   316 -----ESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLR 370
                  +   + + RIF+ HG     TPLL P N         A  M   G +V LP DLR
Sbjct:  1060 TAKMQQHVCETIIRIFKRHGAVQLCTPLLLPRNRQIYEHNEAALFMDHSGMLVMLPFDLR 1119

Query:   371 IPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNT 419
             IPFARY+A+N +I+++KRYCI+RVFR R++  FHP+EL ECAFDIVT+T
Sbjct:  1120 IPFARYVARN-NILNLKRYCIERVFRPRKLDRFHPKELLECAFDIVTST 1167

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0043558 "regulation of translational initiation in response to stress" evidence=IEA

GO:0005622 "intracellular" evidence=NAS

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=ISS

GO:0022626 "cytosolic ribosome" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=ISS

UNIPROTKB|E2RS10 EIF2AK4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 369 (135.0 bits), Expect = 7.5e-59, Sum P(3) = 7.5e-59
 Identities = 74/167 (44%), Positives = 107/167 (64%)

Query:   256 IPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANF--- 312
             +PPP + E+ L +++  TL+N   K Y+ ++A  F+Q+VSPA D TYD ++ +  +    
Sbjct:  1004 LPPPQMEESELHEVLHHTLANVDGKAYRTMMAQIFSQRVSPAIDYTYDSNMPKGFSIRTS 1063

Query:   313 SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIP 372
              + +   D + RIF+ HG     TPLL P N         A  M   G +V LP DLR+P
Sbjct:  1064 KIQQHVCDTIVRIFKKHGAVQLCTPLLLPQNRQIYEHNEAALFMDHSGMLVMLPFDLRVP 1123

Query:   373 FARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNT 419
             FARY+A+N +I+++KRYCI+RVFR R++  FHP+EL ECAFDIVT+T
Sbjct:  1124 FARYVARN-NILNLKRYCIERVFRPRKLDRFHPKELLECAFDIVTST 1169

GO:0043558 "regulation of translational initiation in response to stress" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=IEA

UNIPROTKB|E1BAL6 EIF2AK4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 354 (129.7 bits), Expect = 5.4e-58, Sum P(3) = 5.4e-58
 Identities = 73/169 (43%), Positives = 106/169 (62%)

Query:   256 IPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANFSLL 315
             +PPP + E+ L +++  TL+N   K Y+ ++   F Q++SPA D TYD  + + + FS+ 
Sbjct:  1001 LPPPQMEESELHEVLHHTLANVDGKAYRTMMGQIFAQRISPAIDYTYDSDILKGS-FSIR 1059

Query:   316 -----ESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLR 370
                  +   + + RIF+ HG     TPLL P N         A  M   G +V LP DLR
Sbjct:  1060 TAKIQQHVCETIIRIFKRHGAVQLCTPLLLPRNRQIYEHNEAALFMDHSGMLVMLPFDLR 1119

Query:   371 IPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNT 419
             +PFARY+A+N +I+++KRYCI+RVFR R++  FHP+EL ECAFDIVT+T
Sbjct:  1120 VPFARYVARN-NILNLKRYCIERVFRPRKLDRFHPKELLECAFDIVTST 1167

GO:0043558 "regulation of translational initiation in response to stress" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IEA

GO:0009267 "cellular response to starvation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=IEA

MGI|MGI:1353427 Eif2ak4 "eukaryotic translation initiation factor 2 alpha kinase 4" [Mus musculus (taxid:10090)]

 Score = 349 (127.9 bits), Expect = 3.7e-57, Sum P(3) = 3.7e-57
 Identities = 72/169 (42%), Positives = 105/169 (62%)

Query:   256 IPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANF--- 312
             +PPP + E+ L +++  TL+N   K Y+ +++  F Q +SPA D TYD  + +  NF   
Sbjct:  1000 LPPPQMEESELHEVLHHTLANIDGKAYRTMMSQIFCQHISPAIDYTYDSDILKG-NFLIR 1058

Query:   313 --SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLR 370
                + +   + + R+F+ HG     TPLL P N         A  M   G +V LP DLR
Sbjct:  1059 TAKIQQLVCETIVRVFKRHGAVQLCTPLLLPRNRQIYEHNEAALFMDHSGMLVMLPFDLR 1118

Query:   371 IPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNT 419
             +PFARY+A+N +I+++KRYCI+RVFR R++  FHP+EL ECAFDIVT+T
Sbjct:  1119 VPFARYVARN-NILNLKRYCIERVFRPRKLDRFHPKELLECAFDIVTST 1166

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IDA

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0009267 "cellular response to starvation" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0017148 "negative regulation of translation" evidence=IGI

GO:0022626 "cytosolic ribosome" evidence=ISS

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043558 "regulation of translational initiation in response to stress" evidence=IDA

RGD|1311439 Eif2ak4 "eukaryotic translation initiation factor 2 alpha kinase 4" [Rattus norvegicus (taxid:10116)]

 Score = 346 (126.9 bits), Expect = 4.0e-57, Sum P(3) = 4.0e-57
 Identities = 72/169 (42%), Positives = 104/169 (61%)

Query:   256 IPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANF--- 312
             +PPP + E+ L +++  TL+N   K Y+ +++  F Q  SPA D TYD  + +  NF   
Sbjct:   924 LPPPQMEESELHEVLHHTLANTDGKAYRTMMSQLFCQHSSPAIDYTYDSDILKG-NFLIR 982

Query:   313 --SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLR 370
                + +   + + R+F+ HG     TPLL P N         A  M   G +V LP DLR
Sbjct:   983 TAKIQQLVCETIVRVFKRHGAVQLCTPLLLPRNRQIYEHNEAALFMDHSGMLVMLPFDLR 1042

Query:   371 IPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNT 419
             +PFARY+A+N +I+++KRYCI+RVFR R++  FHP+EL ECAFDIVT+T
Sbjct:  1043 VPFARYVARN-NILNLKRYCIERVFRPRKLDRFHPKELLECAFDIVTST 1090

GO:0004674 "protein serine/threonine kinase activity" evidence=ISO

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0009267 "cellular response to starvation" evidence=ISO

GO:0017148 "negative regulation of translation" evidence=ISO

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=ISO

GO:0043558 "regulation of translational initiation in response to stress" evidence=ISO

UNIPROTKB|D4A7V9 Eif2ak4 "Protein Eif2ak4" [Rattus norvegicus (taxid:10116)]

 Score = 346 (126.9 bits), Expect = 4.8e-57, Sum P(3) = 4.8e-57
 Identities = 72/169 (42%), Positives = 104/169 (61%)

Query:   256 IPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSRSANF--- 312
             +PPP + E+ L +++  TL+N   K Y+ +++  F Q  SPA D TYD  + +  NF   
Sbjct:  1001 LPPPQMEESELHEVLHHTLANTDGKAYRTMMSQLFCQHSSPAIDYTYDSDILKG-NFLIR 1059

Query:   313 --SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLR 370
                + +   + + R+F+ HG     TPLL P N         A  M   G +V LP DLR
Sbjct:  1060 TAKIQQLVCETIVRVFKRHGAVQLCTPLLLPRNRQIYEHNEAALFMDHSGMLVMLPFDLR 1119

Query:   371 IPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNT 419
             +PFARY+A+N +I+++KRYCI+RVFR R++  FHP+EL ECAFDIVT+T
Sbjct:  1120 VPFARYVARN-NILNLKRYCIERVFRPRKLDRFHPKELLECAFDIVTST 1167

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

FB|FBgn0019990 Gcn2 "Gcn2" [Drosophila melanogaster (taxid:7227)]

 Score = 339 (124.4 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 82/227 (36%), Positives = 123/227 (54%)

Query:   212 KWCLNHDPSKRPSSEQNLCQPIXXXXXXXXXXXXXXXXXXTCDHIPPPLVGETVLQDMVR 271
             +W LNHDP++RP++E+ L                        D +PP  +    LQ+M+R
Sbjct:   876 QWLLNHDPAQRPTAEELLIS----------------------DLVPPAQLEANELQEMLR 913

Query:   272 QTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSR---SANFSLL-----------ES 317
               L+NPQSK YK LVA C  Q+     + TY +  SR   S N +++           E 
Sbjct:   914 HALANPQSKAYKNLVARCLQQESDEVLEHTYHLGSSRAMKSWNSAIIIDDIVSLNPVIEF 973

Query:   318 TGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTAS---VMTRGGSIVTLPHDLRIPFA 374
                K+  +F+ HG     +PLL+PL++  +T+   A+   +MT  G +V LP DLR  FA
Sbjct:   974 VKAKVVNLFRKHGAIEVDSPLLSPLSARNSTANANANAVHLMTHSGCVVVLPCDLRTQFA 1033

Query:   375 RYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPG 421
             R++  N S+  ++RYC+DRV+RE RV  FHP++ Y+C+FDI+  T G
Sbjct:  1034 RHVTMN-SVNLIRRYCVDRVYREERVFNFHPKQSYDCSFDIIAPTTG 1079

GO:0006417 "regulation of translation" evidence=IC

GO:0004686 "elongation factor-2 kinase activity" evidence=IDA

GO:0005829 "cytosol" evidence=IC

GO:0006468 "protein phosphorylation" evidence=NAS;IDA

GO:0004672 "protein kinase activity" evidence=NAS

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071011 "precatalytic spliceosome" evidence=IDA

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0045793 "positive regulation of cell size" evidence=IGI

DICTYBASE|DDB_G0276829 ifkB "PEK family protein kinase IfkB" [Dictyostelium discoideum (taxid:44689)]

 Score = 205 (77.2 bits), Expect = 6.6e-29, Sum P(3) = 6.6e-29
 Identities = 54/166 (32%), Positives = 88/166 (53%)

Query:   258 PPLVGETVLQDMVRQTLSNPQSKGYKYLVAACF----NQKVSPADDITYDISLSRSANFS 313
             P  + + +L++ ++ T++NP    + YL+   F    ++ +      T + SL+   +  
Sbjct:   583 PSKMEDDILKEAIK-TIANPTISLFSYLMEKLFCLSNDEHIMSRYLYTSNPSLT-PMHLI 640

Query:   314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASV---MTRGGSIVTLPHDLR 370
               E T  +L +IF  HG     TP L P N   +T    A+V   +   G++V LP+DL 
Sbjct:   641 CREKTFSRLEKIFLNHGSIRIDTPTLFPKNPTNSTHPGAANVAKFLDESGTVVYLPYDLT 700

Query:   371 IPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIV 416
             IP+AR++  + +I   KRY   +V+R R   GF P+ELYEC FDI+
Sbjct:   701 IPWARHVVIH-NIQQAKRYTFSKVYR-RSQPGFSPKELYECDFDII 744

GO:0031589 "cell-substrate adhesion" evidence=IGI

GO:0016337 "cell-cell adhesion" evidence=IGI

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IC

GO:0005524 "ATP binding" evidence=IEA;IC

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000002691 GCN2 "Protein kinase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 214 (80.4 bits), Expect = 1.7e-28, Sum P(3) = 1.7e-28
 Identities = 53/99 (53%), Positives = 63/99 (63%)

Query:     5 WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
             WRL R+I+E LS+IHSQGIIHRDLKP+NIFID   +VKIGDFGLA N+   H     R L
Sbjct:   813 WRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNV---H-----RSL 864

Query:    65 TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE-LDSHG 102
                IL  +DS        + T  +GTA+Y A E LD  G
Sbjct:   865 D--ILK-LDSQNLPGSSDNLTSAIGTAMYVATEVLDGTG 900

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA;IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA;IDA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006446 "regulation of translational initiation" evidence=IEA;IDA

GO:0000077 "DNA damage checkpoint" evidence=IMP

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0004694 "eukaryotic translation initiation factor 2alpha kinase activity" evidence=IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.11.1	0.737
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	454
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	1e-24
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	3e-21
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	9e-19
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	1e-16
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-15
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-15
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	6e-15
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	6e-15
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	5e-14
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	7e-14
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	2e-13
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	2e-13
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	3e-13
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	3e-13
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	3e-13
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	3e-13
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	4e-13
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	8e-13
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-12
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-12
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	2e-12
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	5e-12
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	6e-12
PLN02972	763	PLN02972, PLN02972, Histidyl-tRNA synthetase	7e-12
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	9e-12
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	1e-11
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	1e-11
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	2e-11
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	2e-11
cd05584	323	cd05584, STKc_p70S6K, Catalytic domain of the Prot	2e-11
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	4e-11
cd00773	261	cd00773, HisRS-like_core, Class II Histidinyl-tRNA	4e-11
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	6e-11
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	1e-10
cd05599	364	cd05599, STKc_NDR_like, Catalytic domain of Nuclea	2e-10
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	2e-10
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	2e-10
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	4e-10
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	5e-10
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	5e-10
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	7e-10
TIGR03903	1266	TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclas	7e-10
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	8e-10
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	9e-10
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	9e-10
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	9e-10
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	9e-10
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	1e-09
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	1e-09
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	1e-09
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	2e-09
cd05605	285	cd05605, STKc_GRK4_like, Catalytic domain of G pro	2e-09
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	2e-09
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	2e-09
cd06625	263	cd06625, STKc_MEKK3_like, Catalytic domain of MAP/	2e-09
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	2e-09
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	2e-09
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	2e-09
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	3e-09
cd05632	285	cd05632, STKc_GRK5, Catalytic domain of the Protei	3e-09
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	3e-09
cd05627	360	cd05627, STKc_NDR2, Catalytic domain of the Protei	3e-09
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	4e-09
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	4e-09
cd05612	291	cd05612, STKc_PRKX_like, Catalytic domain of PRKX-	4e-09
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	5e-09
cd05587	324	cd05587, STKc_cPKC, Catalytic domain of the Protei	5e-09
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	5e-09
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	5e-09
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	6e-09
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	6e-09
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	6e-09
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	7e-09
cd08221	256	cd08221, STKc_Nek9, Catalytic domain of the Protei	7e-09
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	7e-09
cd05629	377	cd05629, STKc_NDR_like_fungal, Catalytic domain of	7e-09
cd05608	280	cd05608, STKc_GRK1, Catalytic domain of the Protei	7e-09
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	9e-09
cd06628	267	cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain o	1e-08
cd05630	285	cd05630, STKc_GRK6, Catalytic domain of the Protei	1e-08
PHA03207	392	PHA03207, PHA03207, serine/threonine kinase US3; P	2e-08
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	2e-08
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	2e-08
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	2e-08
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-08
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	2e-08
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-08
cd05598	376	cd05598, STKc_LATS, Catalytic domain of the Protei	3e-08
cd05628	363	cd05628, STKc_NDR1, Catalytic domain of the Protei	3e-08
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-08
COG0124	429	COG0124, HisS, Histidyl-tRNA synthetase [Translati	4e-08
cd06645	267	cd06645, STKc_MAP4K3, Catalytic domain of the Prot	4e-08
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	4e-08
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	4e-08
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	4e-08
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	4e-08
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	4e-08
cd06608	275	cd06608, STKc_myosinIII_like, Catalytic domain of	5e-08
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	5e-08
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	5e-08
cd05596	370	cd05596, STKc_ROCK, Catalytic domain of the Protei	6e-08
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	7e-08
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	9e-08
cd06636	282	cd06636, STKc_MAP4K4_6, Catalytic domain of the Pr	9e-08
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	1e-07
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	1e-07
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	1e-07
cd06617	283	cd06617, PKc_MKK3_6, Catalytic domain of the dual-	1e-07
cd05574	316	cd05574, STKc_phototropin_like, Catalytic domain o	1e-07
cd05589	324	cd05589, STKc_PKN, Catalytic domain of the Protein	2e-07
cd05610	669	cd05610, STKc_MASTL, Catalytic domain of the Prote	2e-07
PTZ00263	329	PTZ00263, PTZ00263, protein kinase A catalytic sub	2e-07
cd05583	288	cd05583, STKc_MSK_N, N-terminal catalytic domain o	2e-07
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-07
cd06651	266	cd06651, STKc_MEKK3, Catalytic domain of the Prote	2e-07
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	2e-07
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	2e-07
cd06653	264	cd06653, STKc_MEKK3_like_1, Catalytic domain of MA	2e-07
PLN00034	353	PLN00034, PLN00034, mitogen-activated protein kina	2e-07
cd05571	323	cd05571, STKc_PKB, Catalytic domain of the Protein	2e-07
cd05621	370	cd05621, STKc_ROCK2, Catalytic domain of the Prote	2e-07
cd05590	320	cd05590, STKc_nPKC_eta, Catalytic domain of the Pr	3e-07
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	3e-07
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	3e-07
cd05609	305	cd05609, STKc_MAST, Catalytic domain of the Protei	3e-07
cd08228	267	cd08228, STKc_Nek6, Catalytic domain of the Protei	3e-07
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	3e-07
cd08229	267	cd08229, STKc_Nek7, Catalytic domain of the Protei	3e-07
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	4e-07
cd05601	330	cd05601, STKc_CRIK, Catalytic domain of the Protei	4e-07
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	4e-07
cd05626	381	cd05626, STKc_LATS2, Catalytic domain of the Prote	5e-07
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	5e-07
cd05625	382	cd05625, STKc_LATS1, Catalytic domain of the Prote	5e-07
cd05586	330	cd05586, STKc_Sck1_like, Catalytic domain of Suppr	5e-07
cd05615	323	cd05615, STKc_cPKC_alpha, Catalytic domain of the	5e-07
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	5e-07
cd06652	265	cd06652, STKc_MEKK2, Catalytic domain of the Prote	7e-07
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	7e-07
cd05616	323	cd05616, STKc_cPKC_beta, Catalytic domain of the P	8e-07
cd06642	277	cd06642, STKc_STK25-YSK1, Catalytic domain of the	8e-07
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	9e-07
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	9e-07
cd06641	277	cd06641, STKc_MST3, Catalytic domain of the Protei	1e-06
cd06618	296	cd06618, PKc_MKK7, Catalytic domain of the dual-sp	1e-06
cd05614	332	cd05614, STKc_MSK2_N, N-terminal catalytic domain	1e-06
PLN03224	507	PLN03224, PLN03224, probable serine/threonine prot	1e-06
cd05631	285	cd05631, STKc_GRK4, Catalytic domain of the Protei	1e-06
cd06637	272	cd06637, STKc_TNIK, Catalytic domain of the Protei	1e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	1e-06
cd05588	329	cd05588, STKc_aPKC, Catalytic domain of the Protei	2e-06
cd06646	267	cd06646, STKc_MAP4K5, Catalytic domain of the Prot	2e-06
cd05575	323	cd05575, STKc_SGK, Catalytic domain of the Protein	2e-06
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	2e-06
cd05585	312	cd05585, STKc_YPK1_like, Catalytic domain of Yeast	3e-06
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-06
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	3e-06
PLN03225	566	PLN03225, PLN03225, Serine/threonine-protein kinas	3e-06
cd05603	321	cd05603, STKc_SGK2, Catalytic domain of the Protei	3e-06
cd05622	371	cd05622, STKc_ROCK1, Catalytic domain of the Prote	3e-06
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	4e-06
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	4e-06
cd05595	323	cd05595, STKc_PKB_beta, Catalytic domain of the Pr	4e-06
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	4e-06
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	4e-06
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	5e-06
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	5e-06
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	5e-06
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	5e-06
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	5e-06
PHA03211	461	PHA03211, PHA03211, serine/threonine kinase US3; P	5e-06
PRK12420	423	PRK12420, PRK12420, histidyl-tRNA synthetase; Prov	6e-06
cd05613	290	cd05613, STKc_MSK1_N, N-terminal catalytic domain	7e-06
cd08218	256	cd08218, STKc_Nek1, Catalytic domain of the Protei	8e-06
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	9e-06
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	9e-06
cd05591	321	cd05591, STKc_nPKC_epsilon, Catalytic domain of th	1e-05
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	1e-05
cd08219	255	cd08219, STKc_Nek3, Catalytic domain of the Protei	1e-05
cd08225	257	cd08225, STKc_Nek5, Catalytic domain of the Protei	1e-05
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	1e-05
cd05067	260	cd05067, PTKc_Lck_Blk, Catalytic domain of the Pro	1e-05
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	1e-05
cd05604	325	cd05604, STKc_SGK3, Catalytic domain of the Protei	1e-05
cd06659	297	cd06659, STKc_PAK6, Catalytic domain of the Protei	2e-05
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	2e-05
cd05602	325	cd05602, STKc_SGK1, Catalytic domain of the Protei	2e-05
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	2e-05
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	2e-05
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	2e-05
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	2e-05
cd05593	328	cd05593, STKc_PKB_gamma, Catalytic domain of the P	2e-05
TIGR00442	397	TIGR00442, hisS, histidyl-tRNA synthetase	3e-05
cd05597	331	cd05597, STKc_DMPK_like, Catalytic domain of Myoto	3e-05
PRK13184	932	PRK13184, pknD, serine/threonine-protein kinase; R	3e-05
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	3e-05
cd05623	332	cd05623, STKc_MRCK_alpha, Catalytic domain of the	3e-05
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	3e-05
cd06633	313	cd06633, STKc_TAO3, Catalytic domain of the Protei	4e-05
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	5e-05
cd05079	284	cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) doma	5e-05
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	6e-05
cd06657	292	cd06657, STKc_PAK4, Catalytic domain of the Protei	7e-05
cd06607	307	cd06607, STKc_TAO, Catalytic domain of the Protein	7e-05
PTZ00283	496	PTZ00283, PTZ00283, serine/threonine protein kinas	8e-05
cd06622	286	cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of	9e-05
PRK00037	412	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	1e-04
cd05624	331	cd05624, STKc_MRCK_beta, Catalytic domain of the P	1e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	1e-04
cd08223	257	cd08223, STKc_Nek4, Catalytic domain of the Protei	1e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	1e-04
cd06643	282	cd06643, STKc_SLK, Catalytic domain of the Protein	1e-04
cd06634	308	cd06634, STKc_TAO2, Catalytic domain of the Protei	1e-04
cd06658	292	cd06658, STKc_PAK5, Catalytic domain of the Protei	2e-04
cd06616	288	cd06616, PKc_MKK4, Catalytic domain of the dual-sp	2e-04
PHA03210	501	PHA03210, PHA03210, serine/threonine kinase US3; P	2e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	2e-04
cd06638	286	cd06638, STKc_myosinIIIA, Catalytic domain of the	2e-04
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	2e-04
cd05617	327	cd05617, STKc_aPKC_zeta, Catalytic domain of the P	2e-04
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	2e-04
PTZ00267	478	PTZ00267, PTZ00267, NIMA-related protein kinase; P	3e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	3e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-04
cd06639	291	cd06639, STKc_myosinIIIB, Catalytic domain of the	3e-04
cd08222	260	cd08222, STKc_Nek11, Catalytic domain of the Prote	3e-04
cd05594	325	cd05594, STKc_PKB_alpha, Catalytic domain of the P	3e-04
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	4e-04
cd06635	317	cd06635, STKc_TAO1, Catalytic domain of the Protei	4e-04
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	5e-04
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	5e-04
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	5e-04
cd05072	261	cd05072, PTKc_Lyn, Catalytic domain of the Protein	6e-04
cd05043	280	cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Rece	6e-04
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	7e-04
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	8e-04
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	8e-04
cd05073	260	cd05073, PTKc_Hck, Catalytic domain of the Protein	8e-04
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	9e-04
cd05106	374	cd05106, PTKc_CSF-1R, Catalytic domain of the Prot	0.001
cd05101	304	cd05101, PTKc_FGFR2, Catalytic domain of the Prote	0.001
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	0.001
PHA03390	267	PHA03390, pk1, serine/threonine-protein kinase 1;	0.001
PRK09605	535	PRK09605, PRK09605, bifunctional UGMP family prote	0.002
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	0.002
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	0.002
cd05100	334	cd05100, PTKc_FGFR3, Catalytic domain of the Prote	0.002
cd05099	314	cd05099, PTKc_FGFR4, Catalytic domain of the Prote	0.002
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	0.002
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	0.003
cd05098	307	cd05098, PTKc_FGFR1, Catalytic domain of the Prote	0.003
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.003
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	0.003
PHA02882	294	PHA02882, PHA02882, putative serine/threonine kina	0.004
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	0.004
cd05144	198	cd05144, RIO2_C, RIO kinase family; RIO2, C-termin	0.004
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	0.004

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score =  101 bits (255), Expect = 1e-24
 Identities = 61/230 (26%), Positives = 87/230 (37%), Gaps = 76/230 (33%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
           ++  +I+ GL ++HS GIIHRDLKP NI +D    VKI DFGLA                
Sbjct: 102 KIALQILRGLEYLHSNGIIHRDLKPENILLDENGVVKIADFGLA---------------- 145

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYV 125
                           +S T  VGT  Y APE+   G            Y  K      V
Sbjct: 146 ---------KKLLKSSSSLTTFVGTPWYMAPEVLLGG----------NGYGPK------V 180

Query: 126 EILRVLW--GYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKF-QKSPPSVYR 182
           ++    W  G +  E+   +P               P +G N+   LQ   +   P +  
Sbjct: 181 DV----WSLGVILYELLTGKP---------------PFSGENILDQLQLIRRILGPPLEF 221

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           +           ++     +  +      K CLN DPSKRP++E+ L  P
Sbjct: 222 DEPKW-------SSGSEEAKDLI------KKCLNKDPSKRPTAEEILQHP 258

Length = 260

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 92.2 bits (230), Expect = 3e-21
 Identities = 34/96 (35%), Positives = 44/96 (45%), Gaps = 26/96 (27%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
            A   LR+I+  L ++HS+GI+HRDLKP NI +D + HVK+ DFGLA             
Sbjct: 98  EARFYLRQILSALEYLHSKGIVHRDLKPENILLDEDGHVKLADFGLAR------------ 145

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                                 T  VGT  Y APE+
Sbjct: 146 --------------QLDPGEKLTTFVGTPEYMAPEV 167

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 84.2 bits (209), Expect = 9e-19
 Identities = 34/97 (35%), Positives = 45/97 (46%), Gaps = 26/97 (26%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLA 61
              R+L +I+EGL ++HS GIIHRDLKP NI +D     VK+ DFGL+  +         
Sbjct: 93  EILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLL--------- 143

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            S  +     VGT  Y APE+
Sbjct: 144 ----------------TSDKSLLKTIVGTPAYMAPEV 164

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 79.1 bits (196), Expect = 1e-16
 Identities = 28/93 (30%), Positives = 42/93 (45%), Gaps = 23/93 (24%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
           +  R+I+EGL+++HS GI+HRD+K  NI +D +  VK+ DFG A  +             
Sbjct: 105 KYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRL------------- 151

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                           T      GT  + APE+
Sbjct: 152 --------GDIETGEGTGSV--RGTPYWMAPEV 174

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 76.8 bits (190), Expect = 1e-15
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 5/89 (5%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI+  L ++HS+GIIHRDLKP NI +D + H+KI DFG A  +L  ++ P   E      
Sbjct: 110 EILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTA-KVLDPNSSP---ESNKGDA 165

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
             IDS    +     +  VGTA Y +PEL
Sbjct: 166 TNIDSQIEKNRRRFAS-FVGTAEYVSPEL 193

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 76.0 bits (188), Expect = 1e-15
 Identities = 26/95 (27%), Positives = 38/95 (40%), Gaps = 27/95 (28%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
                ++   L ++HS+ I+HRD+KP NIF+     VK+GDFG++               
Sbjct: 106 LDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISK-------------- 151

Query: 65  TGYILPPIDSTAFYSHDTSHTG-QVGTALYAAPEL 98
                         S         VGT  Y +PEL
Sbjct: 152 ------------VLSSTVDLAKTVVGTPYYLSPEL 174

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 74.6 bits (184), Expect = 6e-15
 Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 24/93 (25%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
             +R +++G++++H+ GI+HRDLKP N+ I  +  +KI DFG            LAR  +
Sbjct: 103 SYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFG------------LARLFS 150

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                  +    YSH      QV T  Y APEL
Sbjct: 151 E------EEPRLYSH------QVATRWYRAPEL 171

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 74.1 bits (183), Expect = 6e-15
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 25/89 (28%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI+  L ++HS GII+RDLKP NI +D + H+K+ DFGLA     K              
Sbjct: 101 EIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLA-----KE------------- 142

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    S  +      GT  Y APE+
Sbjct: 143 -------LSSEGSRTNTFCGTPEYLAPEV 164

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 71.6 bits (176), Expect = 5e-14
 Identities = 59/236 (25%), Positives = 91/236 (38%), Gaps = 67/236 (28%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
            L ++++GL+  HS GI+HRDLKP N+ I+ E  +K+ DFGLA                 
Sbjct: 103 YLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLA----------------- 145

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYN--QFTPQNYFSKQQKAFY 124
                    +F S    +T  V T  Y APEL       +     ++             
Sbjct: 146 --------RSFGSPVRPYTHYVVTRWYRAPEL-------LLGDKGYSTP----------- 179

Query: 125 VEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPS 179
           V+I  V  G + AE+   RP       +++L    R     + G+   +   KF     +
Sbjct: 180 VDIWSV--GCIFAELLSRRPLFPGKSEIDQLFKIFR-----TLGTPDPEVWPKFTSLARN 232

Query: 180 VYREWRSSF---EWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
            Y+             +  N        L L+ Q    L++DP KR ++EQ L  P
Sbjct: 233 -YKFSFPKKAGMPLPKLFPNASPQ---ALDLLSQ---MLHYDPHKRITAEQALAHP 281

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 71.4 bits (176), Expect = 7e-14
 Identities = 20/44 (45%), Positives = 32/44 (72%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            ++ +++ GL++ HS  I+HRDLKP NI I+ +  +K+ DFGLA
Sbjct: 102 SIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLA 145

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 71.0 bits (175), Expect = 2e-13
 Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 22/88 (25%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
           I+ GL ++HS  +IHRDLKP NI ++    +KI DFGLA  +           LT Y   
Sbjct: 112 ILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEK--GFLTEY--- 166

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            V T  Y APEL
Sbjct: 167 -----------------VVTRWYRAPEL 177

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 25/93 (26%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
            + RE+++GL ++HSQ +IHRD+K  NI +  +  VK+ DFG A  + ++ +        
Sbjct: 120 YVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKS-------- 171

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                                 VGT  + APE+
Sbjct: 172 -----------------KRNSVVGTPYWMAPEV 187

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--- 66
           EI+  L ++HS+GIIHRD+KP NI +D + HV I DF +AT   +     L    +G   
Sbjct: 108 EIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIAT---KVTPDTLTTSTSGTPG 164

Query: 67  YILPPIDSTAFYSH 80
           Y+ P +     YS 
Sbjct: 165 YMAPEVLCRQGYSV 178

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 69.2 bits (170), Expect = 3e-13
 Identities = 20/45 (44%), Positives = 32/45 (71%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            +E+++GL ++HS GIIHRD+K  NI +  +  VK+ DFGL+  +
Sbjct: 104 CKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQL 148

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 21/89 (23%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           +++EGL+++HS GI+HRD+KP NIF+D+   +K+GDFG A   L+ +   +  E+     
Sbjct: 107 QLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAV-KLKNNTTTMGEEVQSL-- 163

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                              GT  Y APE+
Sbjct: 164 ------------------AGTPAYMAPEV 174

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 69.5 bits (171), Expect = 3e-13
 Identities = 20/54 (37%), Positives = 37/54 (68%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPL 60
            +++++EGL ++HS GI+HRD+K  NI I+ +  +K+ DFGLA    ++++   
Sbjct: 105 YMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADY 158

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 70.0 bits (172), Expect = 4e-13
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 10/95 (10%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           E++  L  +H  G IHRD+KP NI ID + H+K+ DFGL   + +          +    
Sbjct: 109 ELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDS---H 165

Query: 70  PPIDSTAFYSHDTSHTGQ-------VGTALYAAPE 97
             +           H  +       VGT  Y APE
Sbjct: 166 NLLFRDNVLVRRRDHKQRRVRANSTVGTPDYIAPE 200

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 68.0 bits (167), Expect = 8e-13
 Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 19/90 (21%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI+  L ++HS GIIHRDLKP NI ID   H+K+ DFGL+   L                
Sbjct: 101 EIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLV--------------- 145

Query: 70  PPIDSTAFYSHDTSHTGQ-VGTALYAAPEL 98
                    + D     + VGT  Y APE+
Sbjct: 146 ---RRQINLNDDEKEDKRIVGTPDYIAPEV 172

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 34/103 (33%), Positives = 48/103 (46%), Gaps = 32/103 (31%)

Query: 5   WRLLREIIEGLSHIH-----SQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGP 59
           WR+L +++  L   H        ++HRDLKP NIF+D  ++VK+GDFGLA          
Sbjct: 108 WRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLA---------- 157

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQ-VGTALYAAPELDSH 101
             + L               HD+S     VGT  Y +PE  +H
Sbjct: 158 --KILG--------------HDSSFAKTYVGTPYYMSPEQLNH 184

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 24/45 (53%), Positives = 36/45 (80%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           WR   +I+ GL+H+HS+ I+HRD+K +N+F+D  D+VKIGD G+A
Sbjct: 104 WRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVA 148

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 26/92 (28%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           ++ +I++GL+HIH  G  HRDLKP N+ +   + VKI DFGLA  I  +           
Sbjct: 104 IIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSR----------- 152

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
              PP            +T  V T  Y APE+
Sbjct: 153 ---PP------------YTDYVSTRWYRAPEI 169

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 66.4 bits (163), Expect = 5e-12
 Identities = 26/64 (40%), Positives = 39/64 (60%), Gaps = 4/64 (6%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           ++LL+     L +IHS  +IHRDLKP NI ++ +  VK+ DFGLA ++ +    P    L
Sbjct: 114 YQLLK----ALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVL 169

Query: 65  TGYI 68
           T Y+
Sbjct: 170 TDYV 173

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 66.7 bits (161), Expect = 6e-12
 Identities = 50/232 (21%), Positives = 76/232 (32%), Gaps = 57/232 (24%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-VKIGDFGLATNILQKHAGPLA 61
            A  +L +I+  L ++HS+GIIHRD+KP NI +D +   VK+ DFGLA  +         
Sbjct: 102 EALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLL--------- 152

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQK 121
                      D  +  S     +  VGT  Y APE+      A  +  +  + +S    
Sbjct: 153 ----------PDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSS--DIWSLGIT 200

Query: 122 AFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVY 181
            + +      +        +       +    I     PS  S +  S            
Sbjct: 201 LYELLTGLPPFE------GEKNSSATSQTLKIILELPTPSLASPLSPSN----------- 243

Query: 182 REWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI 233
                          I       L      K  L  DP  R SS  +L   +
Sbjct: 244 ------------PELISKAASDLL------KKLLAKDPKNRLSSSSDLSHDL 277

Length = 384

>gnl|CDD|215525 PLN02972, PLN02972, Histidyl-tRNA synthetase

 Score = 67.2 bits (164), Expect = 7e-12
 Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 12/112 (10%)

Query: 308 RSANFSLLESTGDKLRRIFQLHGGAHFQTPLL----TPLNSLTATSETTASVMTRGGSIV 363
           R   FS++ S       +F+ HG     TP+     T +      S+    +  +GG + 
Sbjct: 344 REKAFSIITS-------VFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELC 396

Query: 364 TLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDI 415
           +L +DL +PFARY+A NG I S KRY I +V+R         RE Y+C FDI
Sbjct: 397 SLRYDLTVPFARYVAMNG-ITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDI 447

Length = 763

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 65.8 bits (161), Expect = 9e-12
 Identities = 36/91 (39%), Positives = 46/91 (50%), Gaps = 28/91 (30%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           L+ +I+ GL +IHS GIIHRDLKP NI ++ +  +KI DFGLA     +H      E+TG
Sbjct: 123 LVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLA-----RHT---DDEMTG 174

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
           Y                    V T  Y APE
Sbjct: 175 Y--------------------VATRWYRAPE 185

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 46/178 (25%), Positives = 76/178 (42%), Gaps = 54/178 (30%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           WR+  +++ GL  +H Q I+HRDLK  NI +   D VKIGD G++  +L+K+   +A+  
Sbjct: 106 WRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISK-VLKKN---MAKT- 160

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFY 124
                                 Q+GT  Y APE+             P +Y S       
Sbjct: 161 ----------------------QIGTPHYMAPEVWKG---------RPYSYKSD------ 183

Query: 125 VEILRVLW--GYLKAEVYKDRP----KTLEELKHNIRRENGPSTGSNVQKSLQKFQKS 176
                 +W  G L  E+    P    +++++L++ ++R   P       + LQ F +S
Sbjct: 184 ------IWSLGCLLYEMATFAPPFEARSMQDLRYKVQRGKYPPIPPIYSQDLQNFIRS 235

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 64.9 bits (159), Expect = 1e-11
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 25/92 (27%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
            +   + GL ++HS  I+HRDLKP N+ I  +  +K+ DFGLA                 
Sbjct: 107 YMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLA----------------- 149

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    +F S +   T QV T  Y APEL
Sbjct: 150 --------RSFGSPNRKMTHQVVTRWYRAPEL 173

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 33/96 (34%), Positives = 42/96 (43%), Gaps = 19/96 (19%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           +L +I+ GL+ +H    +HRDL P NIFI+ +   KI DFGLA                 
Sbjct: 124 ILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARR--------------- 168

Query: 67  YILPPIDSTAFYSHDTS----HTGQVGTALYAAPEL 98
           Y  PP   T             T +V T  Y APEL
Sbjct: 169 YGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPEL 204

Length = 335

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 63.8 bits (156), Expect = 2e-11
 Identities = 19/45 (42%), Positives = 33/45 (73%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           + ++++GL+++H QG+IHRD+K  NI    +  VK+ DFG+AT +
Sbjct: 105 VYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKL 149

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173675 cd05584, STKc_p70S6K, Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 58/179 (32%), Positives = 76/179 (42%), Gaps = 47/179 (26%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           L EI   L H+H QGII+RDLKP NI +D + HVK+ DFGL    + +            
Sbjct: 106 LSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGT---------- 155

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHGVKA---------MYNQFTPQNY 115
                          +HT   GT  Y APE+     HG KA         MY+  T    
Sbjct: 156 --------------VTHTF-CGTIEYMAPEILMRSGHG-KAVDWWSLGALMYDMLTGAPP 199

Query: 116 FSKQQKAFYVE-ILR---VLWGYLKAEVYKDRPKTLEELKHNI--RRENGPSTGSNVQK 168
           F+ + +   ++ IL+    L  YL  E  +D  K L  LK N   R   GP   + VQ 
Sbjct: 200 FTAENRKKTIDKILKGKLNLPPYLTPEA-RDLLKKL--LKRNPSSRLGAGPGDAAEVQS 255

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the insulin receptor substrate IRS-1, among others. Mammals contain two isoforms of p70S6K, named S6K1 and S6K2 (or S6K-beta). Length = 323

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 20/47 (42%), Positives = 33/47 (70%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
           L+E+++GL ++HS G IHRD+K  NI +  +  VKI DFG++ ++  
Sbjct: 108 LKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLAD 154

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|238396 cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain

 Score = 62.6 bits (153), Expect = 4e-11
 Identities = 32/105 (30%), Positives = 45/105 (42%), Gaps = 9/105 (8%)

Query: 320 DKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTAS-----VMTRGGSIVTLPHDLRIPFA 374
           D LR +F+ +G     TP+          S    S        +GG  + L  DL  P A
Sbjct: 10  DTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVA 69

Query: 375 RYLAQNGSIVSM--KRYCIDRVFR-ERRVLGFHPRELYECAFDIV 416
           R +A+N   + +  K Y I  VFR ER   G   RE Y+   +I+
Sbjct: 70  RAVAENLLSLPLPLKLYYIGPVFRYERPQKG-RYREFYQVGVEII 113

HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. Length = 261

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 63.3 bits (154), Expect = 6e-11
 Identities = 37/96 (38%), Positives = 48/96 (50%), Gaps = 27/96 (28%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHV-KIGDFGLATNILQKHAGPLAR 62
            ++LLR    GL +IHS  ++HRDLKP N+FI+ ED V KIGDFGLA  I+  H      
Sbjct: 120 MYQLLR----GLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLA-RIVDPH------ 168

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                          YSH    +  + T  Y +P L
Sbjct: 169 ---------------YSHKGYLSEGLVTKWYRSPRL 189

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 62.3 bits (152), Expect = 1e-10
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 21/91 (23%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           L +++ GL +IHS  +IHRDLKP N+ ++ +  ++IGDFG+A  +               
Sbjct: 113 LYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSS------------ 160

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
              P +   F    T +   V T  Y APEL
Sbjct: 161 ---PTEHKYFM---TEY---VATRWYRAPEL 182

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|173690 cd05599, STKc_NDR_like, Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 62.0 bits (151), Expect = 2e-10
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 13/101 (12%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY-- 67
           E I  +  IH  G IHRD+KP N+ +D + H+K+ DFGL T + + H     R L+    
Sbjct: 109 ETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALP 168

Query: 68  -ILPPIDSTAFYSHDTSHTGQ----------VGTALYAAPE 97
                  S    S   + T +          VGT  Y APE
Sbjct: 169 SNFLDFISKPMSSKRKAETWKRNRRALAYSTVGTPDYIAPE 209

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplication. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. This subfamily also contains fungal NDR-like kinases. Length = 364

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 61.1 bits (149), Expect = 2e-10
 Identities = 22/44 (50%), Positives = 31/44 (70%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L+R+++ G+  +HS  I+HRDLKP NI +  +  VKI DFGLA
Sbjct: 111 DLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLA 154

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 60.6 bits (147), Expect = 2e-10
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK 55
           E++ G+  +H +GIIHRD+KP N+ ID   H+K+ DFGL+ N L+ 
Sbjct: 105 EVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLEN 150

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 19/43 (44%), Positives = 32/43 (74%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
              +++EGL+++HS+GI+HRDLK  N+ +D +   KI DFG++
Sbjct: 113 FTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGIS 155

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 27/89 (30%), Positives = 39/89 (43%), Gaps = 26/89 (29%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           +II GL H+H + I++RDLKP N+ +D   +V+I D GLA  +                 
Sbjct: 103 QIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGG-------------- 148

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                           G+ GT  Y APE+
Sbjct: 149 ------------KKIKGRAGTPGYMAPEV 165

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 60.0 bits (146), Expect = 5e-10
 Identities = 30/91 (32%), Positives = 43/91 (47%), Gaps = 14/91 (15%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           + +++EG++++H   I+HRD+K  NI ID +  +KI DFG            LAR   G 
Sbjct: 121 MLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFG------------LARPYDGP 168

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
             PP            +T  V T  Y  PEL
Sbjct: 169 --PPNPKGGGGGGTRKYTNLVVTRWYRPPEL 197

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 59.5 bits (145), Expect = 7e-10
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +++  L ++HS  I++RDLKP N+ +D + ++KI DFG A
Sbjct: 109 QVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFA 148

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein

 Score = 61.0 bits (148), Expect = 7e-10
 Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 21/95 (22%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPLAR 62
           RL+ ++++ L+  H+QGI+HRDLKP NI +       H K+ DFG+ T        P  R
Sbjct: 83  RLMLQVLDALACAHNQGIVHRDLKPQNIMVSQTGVRPHAKVLDFGIGT------LLPGVR 136

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
           +         D        T  T  +GT  Y APE
Sbjct: 137 D--------ADVATL----TRTTEVLGTPTYCAPE 159

This model represents proteins of 1350 in length, in multiple species of Burkholderia, in Acidovorax avenae subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1, and in multiple copies in Sorangium cellulosum, in genomic neighborhoods that include a cyclodehydratase/docking scaffold fusion protein (TIGR03882) and a member of the thiazole/oxazole modified metabolite (TOMM) precursor family TIGR03795. It has a kinase domain in the N-terminal 300 amino acids, followed by a cyclase homology domain, followed by regions without named domain definitions. It is a probable bacteriocin-like metabolite biosynthesis protein [Cellular processes, Toxin production and resistance]. Length = 1266

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 59.2 bits (143), Expect = 8e-10
 Identities = 33/94 (35%), Positives = 44/94 (46%), Gaps = 27/94 (28%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EII GL H+H++ +++RDLKP NI +D   HV+I D GLA +                  
Sbjct: 105 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACD------------------ 146

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGV 103
                   +S    H   VGT  Y APE+   GV
Sbjct: 147 --------FSKKKPH-ASVGTHGYMAPEVLQKGV 171

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 59.5 bits (144), Expect = 9e-10
 Identities = 30/71 (42%), Positives = 43/71 (60%), Gaps = 13/71 (18%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           L +I+ GL ++HS G++HRDLKP NI I+    +KI DFGLA   +Q        ++TGY
Sbjct: 114 LYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLAR--IQDP------QMTGY 165

Query: 68  ILPPIDSTAFY 78
           +     ST +Y
Sbjct: 166 V-----STRYY 171

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 59.6 bits (145), Expect = 9e-10
 Identities = 32/97 (32%), Positives = 43/97 (44%), Gaps = 26/97 (26%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFI--DYEDH--VKIGDFGLATNILQKHAGPLA 61
            LL +I+ G+ ++HS  ++HRDLKP NI +  +  +   VKIGD GLA    +    PL 
Sbjct: 112 SLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLA----RLFNAPLK 167

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                              D      V T  Y APEL
Sbjct: 168 --------------PLADLD----PVVVTIWYRAPEL 186

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 21/46 (45%), Positives = 28/46 (60%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK 55
           E+ E +  +H  G IHRDLKP N  ID   H+K+ DFGL+  I+  
Sbjct: 109 EMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTY 154

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 28/94 (29%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           W+LL+     +++ HS  IIHRD+KP NI +     +K+ DFG A  +        A  L
Sbjct: 107 WQLLQ----AIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARAL----RARPASPL 158

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           T Y                    V T  Y APEL
Sbjct: 159 TDY--------------------VATRWYRAPEL 172

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           I  G+ ++ S+  IHRDL   N  +     VKI DFGL+
Sbjct: 111 IARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLS 149

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 58.7 bits (143), Expect = 1e-09
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           I  G+ ++ S+  IHRDL   N  +     VKI DFGL+
Sbjct: 112 IARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLS 150

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 59.1 bits (143), Expect = 1e-09
 Identities = 24/49 (48%), Positives = 35/49 (71%)

Query: 1   MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           + +A  + ++I+EGL ++H+Q IIHRD+K  NIFI+  D V IGD G A
Sbjct: 156 IDQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAA 204

Length = 357

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 12/73 (16%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
             + ++++ L H+H  GI HRD+KP NI I  +D +K+ DFG    I  K         T
Sbjct: 104 SYMYQLLKSLDHMHRNGIFHRDIKPENILIK-DDILKLADFGSCRGIYSKPP------YT 156

Query: 66  GYILPPIDSTAFY 78
            YI     ST +Y
Sbjct: 157 EYI-----STRWY 164

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173696 cd05605, STKc_GRK4_like, Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 26/89 (29%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI  GL  +H + I++RDLKP NI +D   H++I D GLA  I +   G   R       
Sbjct: 110 EITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPE---GETIR------- 159

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                           G+VGT  Y APE+
Sbjct: 160 ----------------GRVGTVGYMAPEV 172

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5, GRK6, and similar GRKs. GRKs in this group contain an N-terminal RGS homology (RH) domain and a catalytic domain, but lack a G protein betagamma-subunit binding domain. They are localized to the plasma membrane through post-translational lipid modification or direct binding to PIP2. Length = 285

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 24/42 (57%), Positives = 31/42 (73%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L E+   L H+HS GII+RDLKP NI +D E H+K+ DFGL+
Sbjct: 104 LAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 145

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 58.8 bits (143), Expect = 2e-09
 Identities = 32/91 (35%), Positives = 43/91 (47%), Gaps = 22/91 (24%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           L +I+ GL +IHS  ++HRDLKP N+ ++    +KI DFGLA     +H           
Sbjct: 112 LYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEH----------- 160

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                D T F       T  V T  Y APE+
Sbjct: 161 -----DHTGFL------TEYVATRWYRAPEI 180

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 25/100 (25%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYI 68
           R+I+EG+ ++HS  I+HRD+K  NI  D   +VK+GDFG +  +                
Sbjct: 111 RQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRL---------------- 154

Query: 69  LPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHGVKA 105
                     S  T      GT  + +PE+   + +G KA
Sbjct: 155 ------QTICSSGTGMKSVTGTPYWMSPEVISGEGYGRKA 188

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 263

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 57.8 bits (140), Expect = 2e-09
 Identities = 24/54 (44%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 6   RLLR---EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH 56
           RLL    +I +G+ ++ SQ  IHRDL   NI ++ ED VKI DFGLA  + +  
Sbjct: 110 RLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDK 163

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 58.3 bits (141), Expect = 2e-09
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA-TNIL 53
           EII GL  +H +GII+RDLK  N+ +D + H+KI DFG+   N+ 
Sbjct: 104 EIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMN 148

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           ++    ++H++GII+RDLKP N+ +D   +VK+ DFG A
Sbjct: 102 VVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFA 140

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 57.4 bits (139), Expect = 3e-09
 Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 25/94 (26%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           W+   ++   L H+HS+ I+HRD+KP N+FI     VK+GD GL      K         
Sbjct: 109 WKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSK--------- 159

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    +TA +S        VGT  Y +PE 
Sbjct: 160 ---------TTAAHS-------LVGTPYYMSPER 177

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173721 cd05632, STKc_GRK5, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

 Score = 57.3 bits (138), Expect = 3e-09
 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 26/89 (29%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI+ GL  +H +  ++RDLKP NI +D   H++I D GLA  I +   G   R       
Sbjct: 110 EILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPE---GESIR------- 159

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                           G+VGT  Y APE+
Sbjct: 160 ----------------GRVGTVGYMAPEV 172

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with the membrane though an N-terminal PIP2 binding domain and also binds phospholipids via its C-terminus. GRK5 deficiency is associated with early Alzheimer's disease in humans and mouse models. GRK5 also plays a crucial role in the pathogenesis of sporadic Parkinson's disease. It participates in the regulation and desensitization of PDGFRbeta, a receptor tyrosine kinase involved in a variety of downstream cellular effects including cell growth, chemotaxis, apoptosis, and angiogenesis. GRK5 also regulates Toll-like receptor 4, which is involved in innate and adaptive immunity. Length = 285

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 29/63 (46%), Positives = 43/63 (68%), Gaps = 8/63 (12%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           L+ +++ GL +IHS GIIHRDLKP N+ ++ +  +KI DFGLA     +HA     E+TG
Sbjct: 122 LVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLA-----RHADA---EMTG 173

Query: 67  YIL 69
           Y++
Sbjct: 174 YVV 176

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|173716 cd05627, STKc_NDR2, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 35/104 (33%), Positives = 51/104 (49%), Gaps = 16/104 (15%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           + E +  +  IH  G IHRD+KP N+ +D + HVK+ DFGL T + + H     R LT  
Sbjct: 107 IAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHN 166

Query: 68  ILPPIDSTAFYSHDTSHTGQ-------------VGTALYAAPEL 98
             PP D + F + ++    +             VGT  Y APE+
Sbjct: 167 --PPSDFS-FQNMNSKRKAETWKKNRRQLAYSTVGTPDYIAPEV 207

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regulating neuronal growth and differentiation, as well as in facilitating neurite outgrowth. It is also implicated in fear conditioning as it contributes to the coupling of neuronal morphological changes with fear-memory consolidation. NDR2 is also referred to as STK38-like. Length = 360

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 57.7 bits (139), Expect = 4e-09
 Identities = 26/63 (41%), Positives = 42/63 (66%), Gaps = 8/63 (12%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           L+ ++++GL +IH+ GIIHRDLKP N+ ++ +  +KI DFGLA     +       E+TG
Sbjct: 123 LVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLA-----RQTD---SEMTG 174

Query: 67  YIL 69
           Y++
Sbjct: 175 YVV 177

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 20/42 (47%), Positives = 32/42 (76%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L ++++G+++ HS  ++HRDLKP N+ ID E  +K+ DFGLA
Sbjct: 105 LYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLA 146

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|173703 cd05612, STKc_PRKX_like, Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

 Score = 57.1 bits (138), Expect = 4e-09
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI+  L ++HS+ I++RDLKP NI +D E H+K+ DFG A
Sbjct: 109 EIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFA 148

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyte/macrophage lineage differentiation, renal cell epithelial migration, and tubular morphogenesis in the developing kidney. Length = 291

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 20/46 (43%), Positives = 32/46 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           +LRE++ GL ++H +G IHRD+K  NI +  E  VK+ DFG++  +
Sbjct: 103 ILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQL 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|173678 cd05587, STKc_cPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 31/67 (46%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLAT-NILQKHAGPLARELTG-- 66
           EI  GL  +HS+GII+RDLK  N+ +D E H+KI DFG+   NI     G   R   G  
Sbjct: 109 EIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFG---GKTTRTFCGTP 165

Query: 67  -YILPPI 72
            YI P I
Sbjct: 166 DYIAPEI 172

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory domain. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. cPKCs are potent kinases for histones, myelin basic protein, and protamine. PKC-gamma is mainly expressed in neuronal tissues. It plays a role in protection from ischemia. Length = 324

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 21/91 (23%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           + +I+ GL +IHS  ++HRDLKP N+ ++ +  +KI DFGLA         P   E  G+
Sbjct: 111 IYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGF---SENP--GENAGF 165

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           +                T  V T  Y APE+
Sbjct: 166 M----------------TEYVATRWYRAPEI 180

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 21/39 (53%), Positives = 29/39 (74%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI+ GL  +H +GII+RDLK  N+ +D E H+KI DFG+
Sbjct: 104 EIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 57.4 bits (138), Expect = 6e-09
 Identities = 28/62 (45%), Positives = 40/62 (64%), Gaps = 8/62 (12%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           L+ +I+ GL +IHS  IIHRDLKP N+ ++ +  +KI DFGLA     +H      E+TG
Sbjct: 125 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA-----RHT---DDEMTG 176

Query: 67  YI 68
           Y+
Sbjct: 177 YV 178

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 56.4 bits (137), Expect = 6e-09
 Identities = 20/47 (42%), Positives = 34/47 (72%), Gaps = 1/47 (2%)

Query: 9   REIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
           R+I++GL ++H++  IIHRD+KP N+ I+ +  VKI DFG++  +  
Sbjct: 106 RQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLEN 152

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 57.0 bits (138), Expect = 6e-09
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           LL +++ G+ H+HS GIIHRDLKP NI +  +  +KI DFGLA
Sbjct: 123 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 165

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
           +++ + ++ ++  H    IHRD+KP NI I  +  +K+ DFG             AR LT
Sbjct: 104 KIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFG------------FARILT 151

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           G                 +T  V T  Y APEL
Sbjct: 152 GP-------------GDDYTDYVATRWYRAPEL 171

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173761 cd08221, STKc_Nek9, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 19/42 (45%), Positives = 31/42 (73%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L +I+  +S+IH  GI+HRD+K +NIF+     +K+GDFG++
Sbjct: 107 LFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGIS 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associates with FACT (FAcilitates Chromatin Transcription) and modulates interphase progression. It also interacts with Nek6, and Nek7, during mitosis, resulting in their activation. Length = 256

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 56.1 bits (136), Expect = 7e-09
 Identities = 17/43 (39%), Positives = 28/43 (65%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLAT 50
           L + ++GL ++HS   IHRD+K  NI ++ E   K+ DFG++ 
Sbjct: 105 LYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSG 147

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173718 cd05629, STKc_NDR_like_fungal, Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 21/47 (44%), Positives = 30/47 (63%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH 56
           E +  +  +H  G IHRD+KP NI ID   H+K+ DFGL+T   ++H
Sbjct: 109 ECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQH 155

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of Ace2p activity and cellular morphogenesis) network. CBK1 and Orb6 play similar roles in coordinating cell morphology with cell cycle progression. Ukc1 is involved in morphogenesis, pathogenicity, and pigment formation. Cot1 plays a role in polar tip extension. Length = 377

>gnl|CDD|173699 cd05608, STKc_GRK1, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

 Score = 56.4 bits (136), Expect = 7e-09
 Identities = 23/53 (43%), Positives = 33/53 (62%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK 55
           RA     +II GL H+H + II+RDLKP N+ +D + +V+I D GLA  +   
Sbjct: 98  RACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDG 150

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual group of GRKs and is expressed in retinal cells. It phosphorylates rhodopsin in rod cells, which leads to termination of the phototransduction cascade. Mutations in GRK1 are associated to a recessively inherited form of stationary nightblindness called Oguchi disease. Length = 280

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 3/64 (4%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT-GYI 68
           EII GL H+H++ +++RDLKP NI +D   HV+I D GLA +  +K   P A   T GY+
Sbjct: 105 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKK--PHASVGTHGYM 162

Query: 69  LPPI 72
            P +
Sbjct: 163 APEV 166

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173732 cd06628, STKc_MAPKKK_Byr2_like, Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 20/42 (47%), Positives = 35/42 (83%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +R+I++GL+++H++GIIHRD+K  NI +D +  +KI DFG++
Sbjct: 112 VRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGIS 153

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Byr2 is regulated by Ras1. It responds to pheromone signaling and controls mating through the MAPK pathway. Budding yeast Ste11 functions in MAPK cascades that regulate mating, high osmolarity glycerol, and filamentous growth responses. Length = 267

>gnl|CDD|173719 cd05630, STKc_GRK6, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 37/111 (33%), Positives = 49/111 (44%), Gaps = 30/111 (27%)

Query: 2   GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLA 61
           GRA     EI  GL  +H + I++RDLKP NI +D   H++I D GLA ++         
Sbjct: 102 GRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHV--------- 152

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTP 112
                    P   T          G+VGT  Y APE+    VK     F+P
Sbjct: 153 ---------PEGQTI--------KGRVGTVGYMAPEV----VKNERYTFSP 182

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK6 plays important roles in the regulation of dopamine, M3 muscarinic, opioid, and chemokine receptor signaling. It also plays maladaptive roles in addiction and Parkinson's disease. GRK6-deficient mice exhibit altered dopamine receptor regulation, decreased lymphocyte chemotaxis, and increased acute inflammation and neutrophil chemotaxis. Length = 285

>gnl|CDD|165473 PHA03207, PHA03207, serine/threonine kinase US3; Provisional

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 20/41 (48%), Positives = 31/41 (75%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           R ++E L+++H +GIIHRD+K  NIF+D  ++  +GDFG A
Sbjct: 192 RRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAA 232

Length = 392

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 20/43 (46%), Positives = 30/43 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L +++ GL +IHS  ++HRDLKP N+ ++    +KI DFGLA
Sbjct: 113 FLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLA 155

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 55.3 bits (133), Expect = 2e-08
 Identities = 23/48 (47%), Positives = 34/48 (70%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH 56
           ++I EG++++HSQ  IHRDL   N+ +D +  VKIGDFGLA  + + H
Sbjct: 114 QQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGH 161

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNIL 53
           R+I+ GL ++H +  +HRD+K  NI +D    VK+ DFG+A  ++
Sbjct: 109 RQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVV 153

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I +G+ ++ S+  +HRDL   N  +  +  VKI DFGL+
Sbjct: 113 QIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLS 152

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 21/93 (22%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
           ++++ ++ GL +IH   I+HRD+K  NI I  +  +K+ DFGLA            R   
Sbjct: 123 KVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNR--- 179

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                             +T +V T  Y  PEL
Sbjct: 180 ------------------YTNRVVTLWYRPPEL 194

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 18/44 (40%), Positives = 30/44 (68%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           RE ++GL+++H  G IHRD+K  NI +  +  VK+ DFG++  +
Sbjct: 108 RETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQL 151

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173689 cd05598, STKc_LATS, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 33/108 (30%), Positives = 46/108 (42%), Gaps = 20/108 (18%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAG----------- 58
           E+   +  +H  G IHRD+KP NI ID + H+K+ DFGL T     H             
Sbjct: 109 ELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQ 168

Query: 59  ------PLARELTGYILPPIDSTAFYSHD--TSHTGQVGTALYAAPEL 98
                     E+    L P++      H    +H+  VGT  Y APE+
Sbjct: 169 DSMEPSEEWSEIDRCRLKPLERRRKRQHQRCLAHS-LVGTPNYIAPEV 215

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Length = 376

>gnl|CDD|173717 cd05628, STKc_NDR1, Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

 Score = 55.1 bits (132), Expect = 3e-08
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 16/104 (15%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           + E +  +  IH  G IHRD+KP N+ +D + HVK+ DFGL T + + H     R L   
Sbjct: 107 IAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHS 166

Query: 68  ILPPIDSTAFYSHDTSHTGQ-------------VGTALYAAPEL 98
           +  P D T F + ++    +             VGT  Y APE+
Sbjct: 167 L--PSDFT-FQNMNSKRKAETWKRNRRQLAFSTVGTPDYIAPEV 207

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, muscle, lung and spleen. It is not an essential protein because mice deficient of NDR1 remain viable and fertile. However, these mice develop T-cell lymphomas and appear to be hypersenstive to carcinogenic treatment. NDR1 appears to act as a tumor suppressor. NDR1 is also called STK38. Length = 363

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 26/93 (27%), Positives = 46/93 (49%), Gaps = 28/93 (30%)

Query: 6   RLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           ++   +++GL+++H +  IIHRD+KP NI ++    +K+ DFG++  +            
Sbjct: 104 KIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQL------------ 151

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                  ++S A     T     VGT+ Y APE
Sbjct: 152 -------VNSLA----KTF----VGTSSYMAPE 169

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|223202 COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

 Score = 54.9 bits (133), Expect = 4e-08
 Identities = 32/131 (24%), Positives = 54/131 (41%), Gaps = 23/131 (17%)

Query: 301 TYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLL--TPL------NSLTATSETT 352
           T D      A    +EST   +R++F+ +G +  +TP+   T L             +  
Sbjct: 10  TRDFLPEDMALREYIEST---IRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEM 66

Query: 353 ASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSM--KRYCIDRVFR-ER----RVLGFHP 405
            +   +GG  + L  +L  P AR +A+N   +    K Y    VFR ER    R      
Sbjct: 67  YTFKDKGGRSLALRPELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGR-----Y 121

Query: 406 RELYECAFDIV 416
           R+ Y+   +++
Sbjct: 122 RQFYQFGVEVI 132

Length = 429

>gnl|CDD|132976 cd06645, STKc_MAP4K3, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 57/224 (25%), Positives = 88/224 (39%), Gaps = 70/224 (31%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYI 68
           RE ++GL ++HS+G +HRD+K  NI +    HVK+ DFG++  I                
Sbjct: 113 RETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQI---------------- 156

Query: 69  LPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEIL 128
                 TA  +   S    +GT  + APE+ +   K  YNQ             + V I 
Sbjct: 157 ------TATIAKRKSF---IGTPYWMAPEVAAVERKGGYNQLC---------DIWAVGIT 198

Query: 129 RVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSF 188
            +    L+  ++   P     L           T SN Q         PP +    +   
Sbjct: 199 AIELAELQPPMFDLHPMRALFLM----------TKSNFQ---------PPKL----KDKM 235

Query: 189 EWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           +WS       ++F HF+      K  L  +P KRP++E+ L  P
Sbjct: 236 KWS-------NSFHHFV------KMALTKNPKKRPTAEKLLQHP 266

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. MAP4K3 is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. mTOR regulates ribosome biogenesis and protein translation, and is frequently deregulated in cancer. Length = 267

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 54.3 bits (131), Expect = 4e-08
 Identities = 61/236 (25%), Positives = 89/236 (37%), Gaps = 64/236 (27%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           R  + L +I+ G+   HS  IIHRD+KP NI +     VK+ DFG A  +    A P   
Sbjct: 101 RVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTL----AAP--- 153

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHGVKAMYNQFTPQNYFSKQ 119
                                +T  V T  Y APEL   D+   +A              
Sbjct: 154 ------------------GEVYTDYVATRWYRAPELLVGDTKYGRA-------------- 181

Query: 120 QKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRRENGPSTGSNVQKSLQKFQ 174
                V+I  V  G L  E+    P       +++L H I+       G+ + +  + FQ
Sbjct: 182 -----VDIWAV--GCLVTEMLTGEPLFPGDSDIDQLYHIIK-----CLGNLIPRHQEIFQ 229

Query: 175 KSPPSVYREWRSSFEWSTVRNNIKSNF-QHFLILIHQQKWCLNHDPSKRPSSEQNL 229
           K+P           E       ++  F +   +++   K CL  DP  RPSS Q L
Sbjct: 230 KNPLFAGMRLPEVKE----IEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLL 281

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 54.0 bits (131), Expect = 4e-08
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            +I +G+ ++ S+  +HRDL   N  +     VKI DFGL+
Sbjct: 109 LQIAKGMEYLESKNFVHRDLAARNCLVTENLVVKISDFGLS 149

Length = 258

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 20/48 (41%), Positives = 32/48 (66%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
           ++RE++  L +IH  G+IHRD+K  NI +    +VK+ DFG+A  + Q
Sbjct: 106 IIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQ 153

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 27/87 (31%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
           +++GLS++HS+ IIHRD+KP NI +  +  VK+ DFG++  ++   AG            
Sbjct: 114 VLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTF---------- 163

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPE 97
                             GT+ Y APE
Sbjct: 164 -----------------TGTSFYMAPE 173

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 20/42 (47%), Positives = 31/42 (73%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L ++++GL+  HS  ++HRDLKP N+ I+ E  +K+ DFGLA
Sbjct: 106 LFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 147

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|173725 cd06608, STKc_myosinIII_like, Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +LRE + GL+++H   +IHRD+K  NI +     VK+ DFG++
Sbjct: 118 ILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVS 160

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin III may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. It may also function as a cargo carrier during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. The Drosophila class III myosin, called NinaC (Neither inactivation nor afterpotential protein C), is critical in normal adaptation and termination of photoresponse. Vertebrates contain two isoforms of class III myosin, IIIA and IIIB. This subfamily also includes mammalian NIK-like embryo-specific kinase (NESK), Traf2- and Nck-interacting kinase (TNIK), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6). MAP4Ks are involved in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Length = 275

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 53.8 bits (129), Expect = 5e-08
 Identities = 22/39 (56%), Positives = 30/39 (76%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EII GL  +HS+GI++RDLK  NI +D + H+KI DFG+
Sbjct: 104 EIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 54.3 bits (130), Expect = 5e-08
 Identities = 24/43 (55%), Positives = 32/43 (74%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           LL +++ G+ H+HS GIIHRDLKP NI +  +  +KI DFGLA
Sbjct: 128 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA 170

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|173687 cd05596, STKc_ROCK, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

 Score = 54.0 bits (130), Expect = 6e-08
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 25/99 (25%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           E++  L  IHS G IHRD+KP N+ +D   H+K+ DFG                      
Sbjct: 150 EVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMK------------------ 191

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPE-LDSHGVKAMY 107
             +D+      DT+    VGT  Y +PE L S G    Y
Sbjct: 192 --MDANGMVRCDTA----VGTPDYISPEVLKSQGGDGYY 224

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via interaction with Rho GTPases and is involved in many cellular functions including contraction, adhesion, migration, motility, proliferation, and apoptosis. The ROCK subfamily consists of two isoforms, ROCK1 and ROCK2, which may be functionally redundant in some systems, but exhibit different tissue distributions. Both isoforms are ubiquitously expressed in most tissues, but ROCK2 is more prominent in brain and skeletal muscle while ROCK1 is more pronounced in the liver, testes, and kidney. Studies in knockout mice result in different phenotypes, suggesting that the two isoforms do not compensate for each other during embryonic development. Length = 370

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 53.9 bits (129), Expect = 7e-08
 Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 8/62 (12%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           L+ +++ GL +IHS GIIHRDLKP N+ ++ +  ++I DFGLA             E+TG
Sbjct: 123 LIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQA--------DDEMTG 174

Query: 67  YI 68
           Y+
Sbjct: 175 YV 176

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 53.5 bits (128), Expect = 9e-08
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 11/76 (14%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           R   LL +++ G+ H+HS GIIHRDLKP NI +  +  +KI DFGLA     + AG    
Sbjct: 127 RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA-----RTAG---- 177

Query: 63  ELTGYILPPIDSTAFY 78
             T +++ P   T +Y
Sbjct: 178 --TSFMMTPYVVTRYY 191

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|132967 cd06636, STKc_MAP4K4_6, Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 47/156 (30%), Positives = 75/156 (48%), Gaps = 16/156 (10%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL-TGY 67
           REI+ GL+H+H+  +IHRD+K  N+ +     VK+ DFG++   L +  G     + T Y
Sbjct: 128 REILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ-LDRTVGRRNTFIGTPY 186

Query: 68  ILPP--------IDSTAFYSHDTSHTG--QVGTALYAAPELDSHGVKAMYNQFTPQNYFS 117
            + P         D+T  Y  D    G   +  A  A P  D H ++A++    P+N   
Sbjct: 187 WMAPEVIACDENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMHPMRALF--LIPRNPPP 244

Query: 118 K-QQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKH 152
           K + K +  + +  + G L  + Y  RP T + LKH
Sbjct: 245 KLKSKKWSKKFIDFIEGCL-VKNYLSRPSTEQLLKH 279

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K4 is also called Nck Interacting kinase (NIK). It facilitates the activation of the MAPKs, extracellular signal-regulated kinase (ERK) 1, ERK2, and c-Jun N-terminal kinase (JNK), by phosphorylating and activating MEKK1. MAP4K4 plays a role in tumor necrosis factor (TNF) alpha-induced insulin resistance. MAP4K4 silencing in skeletal muscle cells from type II diabetic patients restores insulin-mediated glucose uptake. MAP4K4, through JNK, also plays a broad role in cell motility, which impacts inflammation, homeostasis, as well as the invasion and spread of cancer. MAP4K4 is found to be highly expressed in most tumor cell lines relative to normal tissue. MAP4K6 (also called MINK for Misshapen/NIKs-related kinase) is activated after Ras induction and mediates activation of p38 MAPK. MAP4K6 plays a role in cell cycle arrest, cytoskeleton organization, cell adhesion, and cell motility. Length = 282

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L+ +++ G++H+H   I+HRDLK  N+ ++    +KI DFGLA
Sbjct: 111 LMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLA 153

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 52.9 bits (127), Expect = 1e-07
 Identities = 16/43 (37%), Positives = 31/43 (72%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            +++++EGL++ H +  +HRD+K  NI ++ +  +K+ DFGLA
Sbjct: 121 FMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLA 163

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 53.2 bits (127), Expect = 1e-07
 Identities = 31/76 (40%), Positives = 44/76 (57%), Gaps = 11/76 (14%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           R   LL +++ G+ H+HS GIIHRDLKP NI +  +  +KI DFGLA     + AG    
Sbjct: 120 RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLA-----RTAG---- 170

Query: 63  ELTGYILPPIDSTAFY 78
             T +++ P   T +Y
Sbjct: 171 --TSFMMTPYVVTRYY 184

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|173729 cd06617, PKc_MKK3_6, Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 27/88 (30%)

Query: 11  IIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           I++ L ++HS+  +IHRD+KP N+ I+    VK+ DFG                ++GY+ 
Sbjct: 112 IVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFG----------------ISGYL- 154

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPE 97
             +DS A        T   G   Y APE
Sbjct: 155 --VDSVA-------KTIDAGCKPYMAPE 173

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs that phosphorylate and activate their downstream target, p38 MAPK, on specific threonine and tyrosine residues. MKK3/6 plays roles in the regulation of cell cycle progression, cytokine- and stress-induced apoptosis, oncogenic transformation, and adult tissue regeneration. In addition, MKK6 plays a critical role in osteoclast survival in inflammatory disease while MKK3 is associated with tumor invasion, progression, and poor patient survival in glioma. Length = 283

>gnl|CDD|173665 cd05574, STKc_phototropin_like, Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 29/102 (28%), Positives = 43/102 (42%), Gaps = 11/102 (10%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATN------ILQKHAGPLARE 63
           E++  L ++H  GI++RDLKP NI +    H+ + DF L+         + K     +R 
Sbjct: 111 EVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSR- 169

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHG 102
               +      T            VGT  Y APE+   D HG
Sbjct: 170 -RSSVNSIPSETFSEEPSFRSNSFVGTEEYIAPEVISGDGHG 210

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-terminal photosensory domain and a C-terminal catalytic domain. The N-terminal domain contains two LOV (Light, Oxygen or Voltage) domains that binds FMN. Photoexcitation of the LOV domains results in autophosphorylation at multiple sites and activation of the catalytic domain. Neurospora crassa nrc-2 plays a role in growth and development by controlling entry into the conidiation program. Length = 316

>gnl|CDD|173680 cd05589, STKc_PKN, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
            ++ GL ++H   I++RDLK  N+ +D E  VKI DFGL
Sbjct: 109 CVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGL 147

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved in many biological processes including cytokeletal regulation, cell adhesion, vesicle transport, glucose transport, regulation of meiotic maturation and embryonic cell cycles, signaling to the nucleus, and tumorigenesis. Length = 324

>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 8/80 (10%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           E+   L ++H  GIIHRDLKP N+ I  E H+K+ DFGL+   L        REL    +
Sbjct: 112 EVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKVTLN-------RELNMMDI 164

Query: 70  PPIDSTAFYSHDTSHT-GQV 88
               S A   +D S T GQV
Sbjct: 165 LTTPSMAKPKNDYSRTPGQV 184

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ14813 is associated with autosomal dominant thrombocytopenia. To date, the function of MASTL is unknown. Length = 669

>gnl|CDD|140289 PTZ00263, PTZ00263, protein kinase A catalytic subunit; Provisional

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           E++    ++HS+ II+RDLKP N+ +D + HVK+ DFG A  +
Sbjct: 126 ELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKV 168

Length = 329

>gnl|CDD|173674 cd05583, STKc_MSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI+  L H+H  GII+RD+K  NI +D E HV + DFGL+
Sbjct: 113 EIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLS 152

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines. This triggers phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) in the C-terminal extension of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSKs are predominantly nuclear proteins. They are widely expressed in many tissues including heart, brain, lung, liver, kidney, and pancreas. There are two isoforms of MSK, called MSK1 and MSK2. Length = 288

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 25/92 (27%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           L+ +++ GL ++H   IIHRDLK  N+ +  +  +KI DFGLA                 
Sbjct: 113 LMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLART--------------- 157

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                     +       T +V T  Y APEL
Sbjct: 158 ----------YGLPAKPMTPKVVTLWYRAPEL 179

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|132982 cd06651, STKc_MEKK3, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 30/67 (44%), Positives = 43/67 (64%), Gaps = 5/67 (7%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK--HAGPLARELTG 66
           R+I+EG+S++HS  I+HRD+K  NI  D   +VK+GDFG A+  LQ    +G   R +TG
Sbjct: 113 RQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFG-ASKRLQTICMSGTGIRSVTG 171

Query: 67  --YILPP 71
             Y + P
Sbjct: 172 TPYWMSP 178

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. In addition, MEKK3 is involved in interleukin-1 receptor and Toll-like receptor 4 signaling. It is also a specific regulator of the proinflammatory cytokines IL-6 and GM-CSF in some immune cells. MEKK3 also regulates calcineurin, which plays a critical role in T cell activation, apoptosis, skeletal myocyte differentiation, and cardiac hypertrophy. Length = 266

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 21/40 (52%), Positives = 30/40 (75%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +++ GL++IH Q I+HRDLKP N+ I Y   +K+ DFGLA
Sbjct: 111 QLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 1/47 (2%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHV-KIGDFGLATN 51
             + ++++G++H H  G++HRDLKP N+ +D +  + KI D GL   
Sbjct: 114 SFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRA 160

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|132984 cd06653, STKc_MEKK3_like_1, Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           R  R+I++G+S++HS  I+HRD+K  NI  D   +VK+GDFG +  I
Sbjct: 110 RYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRI 156

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK2 and MEKK3 activate MEK5 (also called MKK5), which activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development. MEKK2 and MEKK3 can also activate the MAPKs, c-Jun N-terminal kinase (JNK) and p38, through their respective MAPKKs. Length = 264

>gnl|CDD|215036 PLN00034, PLN00034, mitogen-activated protein kinase kinase; Provisional

 Score = 52.5 bits (126), Expect = 2e-07
 Identities = 18/43 (41%), Positives = 33/43 (76%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           + R+I+ G++++H + I+HRD+KP N+ I+   +VKI DFG++
Sbjct: 173 VARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVS 215

Length = 353

>gnl|CDD|173662 cd05571, STKc_PKB, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

 Score = 52.1 bits (125), Expect = 2e-07
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI+  L ++HS  +++RDLK  N+ +D + H+KI DFGL
Sbjct: 103 EIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having been implicated in tumor initiation, progression, and metastasis. Length = 323

>gnl|CDD|173711 cd05621, STKc_ROCK2, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 33/101 (32%), Positives = 45/101 (44%), Gaps = 25/101 (24%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           E++  L  IHS G+IHRD+KP N+ +D   H+K+ DFG                      
Sbjct: 150 EVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMK------------------ 191

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPE-LDSHGVKAMYNQ 109
             +D T     DT+    VGT  Y +PE L S G    Y +
Sbjct: 192 --MDETGMVRCDTA----VGTPDYISPEVLKSQGGDGYYGR 226

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found to play a role in stress fiber and focal adhesion formation. It is prominently expressed in the brain, heart, and skeletal muscles. It is implicated in vascular and neurological disorders, such as hypertension and vasospasm of the coronary and cerebral arteries. ROCK2 is also activated by caspase-2 cleavage, resulting in thrombin-induced microparticle generation in response to cell activation. Mice deficient in ROCK2 show intrauterine growth retardation and embryonic lethality because of placental dysfunction. Length = 370

>gnl|CDD|173681 cd05590, STKc_nPKC_eta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

 Score = 51.8 bits (124), Expect = 3e-07
 Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 5/72 (6%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--- 66
           EI   L  +H +GII+RDLK  N+ +D+E H K+ DFG+    +    G       G   
Sbjct: 104 EITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI--FNGKTTSTFCGTPD 161

Query: 67  YILPPIDSTAFY 78
           YI P I     Y
Sbjct: 162 YIAPEILQEMLY 173

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signaling of cell-type specific differentiation. It is also expressed in pro-B cells and early-stage thymocytes, and acts as a key regulator in early B-cell development. PKC-eta increases glioblastoma multiforme (GBM) proliferation and resistance to radiation, and is being developed as a therapeutic target for the management of GBM. Length = 320

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 18/45 (40%), Positives = 30/45 (66%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATN 51
            + ++++GL+  HS  ++HRDLKP N+ I+    +K+ DFGLA  
Sbjct: 104 FMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 51.9 bits (124), Expect = 3e-07
 Identities = 21/39 (53%), Positives = 30/39 (76%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI+ GL  +HS+GII+RDLK  N+ +D + H+KI DFG+
Sbjct: 104 EIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173700 cd05609, STKc_MAST, Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL--------ATNILQKHAGPLA 61
           E +  L ++H+ GI+HRDLKP N+ I    H+K+ DFGL         TN+ + H     
Sbjct: 109 ETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDT 168

Query: 62  RE 63
           RE
Sbjct: 169 RE 170

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. MAST1, MAST2, and MAST3 bind and phosphorylate the tumor suppressor PTEN, and may contribute to the regulation and stabilization of PTEN. MAST2 is involved in the regulation of the Fc-gamma receptor of the innate immune response in macrophages, and may also be involved in the regulation of the Na+/H+ exchanger NHE3. Length = 305

>gnl|CDD|173768 cd08228, STKc_Nek6, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           W+   ++   + H+HS+ ++HRD+KP N+FI     VK+GD GL                
Sbjct: 109 WKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLG--------------- 153

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                       F S  T+    VGT  Y +PE
Sbjct: 154 ----------RFFSSKTTAAHSLVGTPYYMSPE 176

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase and anaphase, and to the midbody during cytokinesis. Length = 267

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 27/97 (27%)

Query: 3   RAWRLLREIIEGLSHIHSQG-IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLA 61
           R W +  +++  L ++H +  I+HRDL P NI +  +D V I DFGLA     K   P  
Sbjct: 114 RIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLA-----KQKQP-- 166

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                              ++  T  VGT LY+ PE+
Sbjct: 167 -------------------ESKLTSVVGTILYSCPEI 184

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173769 cd08229, STKc_Nek7, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 23/67 (34%), Positives = 35/67 (52%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           W+   ++   L H+HS+ ++HRD+KP N+FI     VK+GD GL      K     +   
Sbjct: 109 WKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVG 168

Query: 65  TGYILPP 71
           T Y + P
Sbjct: 169 TPYYMSP 175

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 51.7 bits (124), Expect = 4e-07
 Identities = 21/42 (50%), Positives = 31/42 (73%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L +I+ GL ++HS GI+HRD+KP N+ ++    +KI DFGLA
Sbjct: 109 LYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLA 150

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|173692 cd05601, STKc_CRIK, Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

 Score = 51.4 bits (123), Expect = 4e-07
 Identities = 28/92 (30%), Positives = 39/92 (42%), Gaps = 26/92 (28%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI-LQKHAGPLARELTG 66
           L E++  +  +H  G +HRD+KP N+ ID   H+K+ DFG A  +   K           
Sbjct: 108 LAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSK------ 161

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
             LP                 VGT  Y APE+
Sbjct: 162 --LP-----------------VGTPDYIAPEV 174

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnormal cytokinesis and massive apoptosis in neuronal precursors. A Down syndrome critical region protein TTC3 interacts with CRIK and inhibits CRIK-dependent neuronal differentiation and neurite extension. Length = 330

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 50.9 bits (122), Expect = 4e-07
 Identities = 57/229 (24%), Positives = 82/229 (35%), Gaps = 80/229 (34%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA---TNILQKHAGPLARELT 65
           R+++E L+ +HS  +IHRDLK  NI +  +  VK+ DFG++    + LQK          
Sbjct: 110 RQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQK---------- 159

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYV 125
                          DT     +GT  + APE+           F    Y  K       
Sbjct: 160 --------------RDTF----IGTPYWMAPEV------VACETFKDNPYDYKAD----- 190

Query: 126 EILRVLW--GYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYRE 183
                +W  G    E+ +  P               P    N  + L K  KS P    +
Sbjct: 191 -----IWSLGITLIELAQMEP---------------PHHELNPMRVLLKILKSEPPTLDQ 230

Query: 184 WRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                +WS       S+F  FL      K CL  DP  RP++ + L  P
Sbjct: 231 ---PSKWS-------SSFNDFL------KSCLVKDPDDRPTAAELLKHP 263

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|173715 cd05626, STKc_LATS2, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

 Score = 51.6 bits (123), Expect = 5e-07
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH 56
           E+   +  +H  G IHRD+KP NI ID + H+K+ DFGL T     H
Sbjct: 109 ELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTH 155

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with poor prognosis in acute lymphoblastic leukemia and breast cancer. Length = 381

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 18/42 (42%), Positives = 29/42 (69%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L +++ GL++ H + ++HRDLKP N+ I     +K+ DFGLA
Sbjct: 109 LFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|173714 cd05625, STKc_LATS1, Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 21/47 (44%), Positives = 28/47 (59%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH 56
           E+   +  +H  G IHRD+KP NI ID + H+K+ DFGL T     H
Sbjct: 109 ELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTH 155

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype and poor prognosis. LATS1 induces G2 arrest and promotes cytokinesis. It may be a component of the mitotic exit network in higher eukaryotes. Length = 382

>gnl|CDD|173677 cd05586, STKc_Sck1_like, Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 21/55 (38%), Positives = 32/55 (58%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHA 57
           RA   + E++  L H+H   I++RDLKP NI +D   H+ + DFGL+   L  + 
Sbjct: 97  RAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNK 151

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of yeast to environmental changes. Length = 330

>gnl|CDD|173706 cd05615, STKc_cPKC_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 28/66 (42%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--- 66
           EI  GL  +H +GII+RDLK  N+ +D E H+KI DFG+    +    G   R   G   
Sbjct: 109 EISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVD--GVTTRTFCGTPD 166

Query: 67  YILPPI 72
           YI P I
Sbjct: 167 YIAPEI 172

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. PKC-alpha is expressed in many tissues and is associated with cell proliferation, apoptosis, and cell motility. It plays a role in the signaling of the growth factors PDGF, VEGF, EGF, and FGF. Abnormal levels of PKC-alpha have been detected in many transformed cell lines and several human tumors. In addition, PKC-alpha is required for HER2 dependent breast cancer invasion. Length = 323

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 20/42 (47%), Positives = 31/42 (73%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L +I++G+   HS+ ++HRDLKP N+ ID +  +K+ DFGLA
Sbjct: 107 LYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLA 148

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|132983 cd06652, STKc_MEKK2, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

 Score = 50.0 bits (119), Expect = 7e-07
 Identities = 24/49 (48%), Positives = 35/49 (71%), Gaps = 1/49 (2%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
           +  R+I+EG+S++HS  I+HRD+K  NI  D   +VK+GDFG A+  LQ
Sbjct: 110 KYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFG-ASKRLQ 157

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their respective MAPKKs MEK1/2, JNK-activating kinase 2 (JNKK2), and MKK3/6. MEKK2 plays roles in T cell receptor signaling, immune synapse formation, cytokine gene expression, as well as in EGF and FGF receptor signaling. Length = 265

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 50.3 bits (120), Expect = 7e-07
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L+R+ + GL  +H+  I+HRDLKP NI +     VK+ DFGLA
Sbjct: 113 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLA 155

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|173707 cd05616, STKc_cPKC_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 22/39 (56%), Positives = 29/39 (74%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI  GL  +HS+GII+RDLK  N+ +D E H+KI DFG+
Sbjct: 109 EIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGM 147

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and gamma. The PKC beta isoforms (I and II), generated by alternative splicing of a single gene, are preferentially activated by hyperglycemia-induced DAG in retinal tissues. This is implicated in diabetic microangiopathy such as ischemia, neovascularization, and abnormal vasodilator function. PKC-beta also plays an important role in VEGF signaling. In addition, glucose regulates proliferation in retinal endothelial cells via PKC-betaI. PKC-beta is also being explored as a therapeutic target in cancer. It contributes to tumor formation and is involved in the tumor host mechanisms of inflammation and angiogenesis. Length = 323

>gnl|CDD|132973 cd06642, STKc_STK25-YSK1, Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 20/43 (46%), Positives = 32/43 (74%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +LREI++GL ++HS+  IHRD+K  N+ +  +  VK+ DFG+A
Sbjct: 106 ILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVA 148

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25 is a candidate gene responsible for pseudopseudohypoparathyroidism (PPHP), a disease that shares features with the Albright hereditary osteodystrophy (AHO) phenotype. Length = 277

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 50.2 bits (120), Expect = 9e-07
 Identities = 18/45 (40%), Positives = 29/45 (64%), Gaps = 4/45 (8%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           ++LL+    G++  H   ++HRDLKP N+ I+    +K+ DFGLA
Sbjct: 107 YQLLK----GIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLA 147

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 50.1 bits (119), Expect = 9e-07
 Identities = 50/185 (27%), Positives = 83/185 (44%), Gaps = 31/185 (16%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL-- 64
           +L+EI++GL ++HS+  IHRD+K  N+ +  +  VK+ DFG+A  +       + R    
Sbjct: 106 MLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQ---IKRNTFV 162

Query: 65  -TGYILPP--IDSTAFYSH-DTSHTGQVGTALYAA--PELDSHGVKAMYN--QFTPQNY- 115
            T + + P  I  +A+ S  D    G     L     P  D H ++ ++   +  P    
Sbjct: 163 GTPFWMAPEVIQQSAYDSKADIWSLGITAIELAKGEPPNSDMHPMRVLFLIPKNNPPTLT 222

Query: 116 --FSKQQKAFYVEILRVLWGYLKAEVYKD---RPKTLEELKHNIRRENGPSTGSNVQKSL 170
             FSK  K F           + A + KD   RP   E LKH    +N   T S + + +
Sbjct: 223 GEFSKPFKEF-----------IDACLNKDPSFRPTAKELLKHKFIVKNAKKT-SYLTELI 270

Query: 171 QKFQK 175
            +F++
Sbjct: 271 DRFKR 275

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132972 cd06641, STKc_MST3, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +LREI++GL ++HS+  IHRD+K  N+ +     VK+ DFG+A
Sbjct: 106 ILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVA 148

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and intrauterine growth retardation. Length = 277

>gnl|CDD|132949 cd06618, PKc_MKK7, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 29/88 (32%), Positives = 41/88 (46%), Gaps = 27/88 (30%)

Query: 11  IIEGLSHI-HSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           I++ L ++    G+IHRD+KP NI +D   +VK+ DFG+        +G L         
Sbjct: 123 IVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGI--------SGRL--------- 165

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPE 97
             +DS A        T   G A Y APE
Sbjct: 166 --VDSKA-------KTRSAGCAAYMAPE 184

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates its downstream target, c-Jun N-terminal kinase (JNK), on specific threonine and tyrosine residues. Although MKK7 is capable of dual phosphorylation, it prefers to phosphorylate the threonine residue of JNK. Thus, optimal activation of JNK requires both MKK4 (not included in this subfamily) and MKK7. MKK7 is primarily activated by cytokines. MKK7 is essential for liver formation during embryogenesis. It plays roles in G2/M cell cycle arrest and cell growth. In addition, it is involved in the control of programmed cell death, which is crucial in oncogenesis, cancer chemoresistance, and antagonism to TNFalpha-induced killing, through its inhibition by Gadd45beta and the subsequent suppression of the JNK cascade. Length = 296

>gnl|CDD|173705 cd05614, STKc_MSK2_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK 55
           EII  L H+H  GI++RD+K  NI +D E HV + DFGL+   L +
Sbjct: 113 EIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSE 158

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK2 and MSK1 play nonredundant roles in activating histone H3 kinases, which play pivotal roles in compaction of the chromatin fiber. MSK2 is the required H3 kinase in response to stress stimuli and activation of the p38 MAPK pathway. MSK2 also plays a role in the pathogenesis of psoriasis. Length = 332

>gnl|CDD|178763 PLN03224, PLN03224, probable serine/threonine protein kinase; Provisional

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 19/46 (41%), Positives = 32/46 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           ++R+++ GL  +H  GI+HRD+KP N+ +  +  VKI DFG A ++
Sbjct: 314 VMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDM 359

Length = 507

>gnl|CDD|173720 cd05631, STKc_GRK4, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 29/89 (32%), Positives = 40/89 (44%), Gaps = 26/89 (29%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           E+  GL  +  + I++RDLKP NI +D   H++I D GLA  I +   G   R       
Sbjct: 110 ELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE---GETVR------- 159

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                           G+VGT  Y APE+
Sbjct: 160 ----------------GRVGTVGYMAPEV 172

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found in the testis, but is also present in the cerebellum and kidney. It is expressed as multiple splice variants with different domain architectures. It is post-translationally palmitoylated and localized in the membrane. GRK4 polymorphisms are associated with hypertension and salt sensitivity, as they cause hyperphosphorylation, desensitization, and internalization of the dopamine 1 (D1) receptor while increasing the expression of the angiotensin II type 1 receptor. GRK4 plays a crucial role in the D1 receptor regulation of sodium excretion and blood pressure. Length = 285

>gnl|CDD|132968 cd06637, STKc_TNIK, Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

 Score = 49.3 bits (117), Expect = 1e-06
 Identities = 41/157 (26%), Positives = 71/157 (45%), Gaps = 14/157 (8%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL-T 65
           + REI+ GLSH+H   +IHRD+K  N+ +     VK+ DFG++   L +  G     + T
Sbjct: 116 ICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQ-LDRTVGRRNTFIGT 174

Query: 66  GYILPP--------IDSTAFYSHDTSHTG--QVGTALYAAPELDSHGVKAMYNQFTPQNY 115
            Y + P         D+T  +  D    G   +  A  A P  D H ++A++    P+N 
Sbjct: 175 PYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPMRALF--LIPRNP 232

Query: 116 FSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKH 152
             + +   + +  +        + +  RP T + +KH
Sbjct: 233 APRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKH 269

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activates the c-Jun N-terminal kinase (JNK) pathway and plays a role in regulating the actin cytoskeleton. Length = 272

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 25/68 (36%), Positives = 36/68 (52%), Gaps = 3/68 (4%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLAREL 64
               +++ GLS++H   IIHRD+K  N+ ID     ++I DFG A  +  K  G  A E 
Sbjct: 107 NYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTG--AGEF 164

Query: 65  TGYILPPI 72
            G +L  I
Sbjct: 165 QGQLLGTI 172

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173679 cd05588, STKc_aPKC, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 5/66 (7%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--- 66
           EI   L+ +H +GII+RDLK  N+ +D E H+K+ D+G+    ++   G       G   
Sbjct: 104 EISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRP--GDTTSTFCGTPN 161

Query: 67  YILPPI 72
           YI P I
Sbjct: 162 YIAPEI 167

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions including proliferation, migration, apoptosis, polarity maintenance and cytoskeletal regulation. They also play a critical role in the regulation of glucose metabolism and in the pathogenesis of type 2 diabetes. Length = 329

>gnl|CDD|132977 cd06646, STKc_MAP4K5, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 8/107 (7%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYI 68
           RE ++GL+++HS+G +HRD+K  NI +     VK+ DFG+A  I    A   +   T Y 
Sbjct: 113 RETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYW 172

Query: 69  LPP----IDSTAFYSH--DTSHTGQVGTAL--YAAPELDSHGVKAMY 107
           + P    ++    Y+   D    G     L     P  D H ++A++
Sbjct: 173 MAPEVAAVEKNGGYNQLCDIWAVGITAIELAELQPPMFDLHPMRALF 219

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). MAP4K5 also facilitates Wnt signaling in B cells, and may therefore be implicated in the control of cell fate, proliferation, and polarity. Length = 267

>gnl|CDD|173666 cd05575, STKc_SGK, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

 Score = 49.0 bits (117), Expect = 2e-06
 Identities = 21/39 (53%), Positives = 27/39 (69%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI   L ++HS  II+RDLKP NI +D + HV + DFGL
Sbjct: 104 EIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell proliferation, and apoptosis. Length = 323

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 1/64 (1%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYI 68
           +I+  L H+H++ I+HRDLK  NI +D ++  VKIGDFG++  +  K           YI
Sbjct: 109 QILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYI 168

Query: 69  LPPI 72
            P +
Sbjct: 169 SPEL 172

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|173676 cd05585, STKc_YPK1_like, Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

 Score = 48.8 bits (116), Expect = 3e-06
 Identities = 20/46 (43%), Positives = 30/46 (65%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           RA     E++  L ++H   +I+RDLKP NI +DY+ H+ + DFGL
Sbjct: 94  RARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGL 139

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It plays a role in cell growth and sexual development. Length = 312

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 26/105 (24%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           L +++  L +IH+  + HRDLKP NI  + +  +KI DFGLA         P A   T Y
Sbjct: 109 LYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFND--TPTAIFWTDY 166

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTP 112
                               V T  Y APEL      + ++++TP
Sbjct: 167 --------------------VATRWYRAPEL----CGSFFSKYTP 187

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 19/48 (39%), Positives = 27/48 (56%)

Query: 1   MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           +        +I  G+ ++ S+  IHRDL   NI +  +D VKIGDFGL
Sbjct: 96  ISTLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGL 143

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|215638 PLN03225, PLN03225, Serine/threonine-protein kinase SNT7; Provisional

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVN-IFIDYEDHVKIGDFGLATNI 52
            ++R+I+  L  +HS GI+HRD+KP N IF +     KI D G A ++
Sbjct: 259 TIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADL 306

Length = 566

>gnl|CDD|173694 cd05603, STKc_SGK2, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           E+   + ++HS  II+RDLKP NI +D + HV + DFGL
Sbjct: 104 EVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1. Length = 321

>gnl|CDD|173712 cd05622, STKc_ROCK1, Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

 Score = 48.9 bits (116), Expect = 3e-06
 Identities = 19/38 (50%), Positives = 26/38 (68%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFG 47
           E++  L  IHS G IHRD+KP N+ +D   H+K+ DFG
Sbjct: 150 EVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFG 187

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, and kidney. It mediates signaling from Rho to the actin cytoskeleton. It is implicated in the development of cardiac fibrosis, cardiomyocyte apoptosis, and hyperglycemia. Mice deficient with ROCK1 display eyelids open at birth (EOB) and omphalocele phenotypes due to the disorganization of actin filaments in the eyelids and the umbilical ring. Length = 371

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 26/97 (26%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           ++I+EGL ++H   I+HRD+K  N+ ++ Y   VKI DFG             ++ L G 
Sbjct: 115 KQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFG------------TSKRLAG- 161

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVK 104
            + P   T             GT  Y APE+   G +
Sbjct: 162 -INPCTETF-----------TGTLQYMAPEVIDKGPR 186

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 19/40 (47%), Positives = 30/40 (75%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +++ GLS+ H + I+HRDLKP N+ I+ +  +K+ DFGLA
Sbjct: 111 QLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|173686 cd05595, STKc_PKB_beta, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 17/39 (43%), Positives = 29/39 (74%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI+  L ++HS+ +++RD+K  N+ +D + H+KI DFGL
Sbjct: 103 EIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in PKB-beta display normal growth weights but exhibit severe insulin resistance and diabetes, accompanied by lipoatrophy and B-cell failure. Length = 323

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 48.1 bits (114), Expect = 4e-06
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           ++ +++ GL  +HS  ++HRDLKP NI +     +K+ DFGLA
Sbjct: 115 MMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 157

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I +G+ ++ S+  +HRDL   NI ++ E+ VKIGDFGL 
Sbjct: 116 QICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLT 155

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 31/43 (72%), Gaps = 1/43 (2%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLA 49
           L +I+ G+++ HS  ++HRDLKP N+ ID   + +K+ DFGLA
Sbjct: 108 LYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLA 150

Length = 294

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 47.8 bits (113), Expect = 5e-06
 Identities = 21/43 (48%), Positives = 30/43 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L +++ GLS+IH + I+HRDLKP N+ I     +K+ DFGLA
Sbjct: 108 FLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLA 150

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)

Query: 1   MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPL 60
           M R      +I  G+ H+HS  I++RD+KP N+ +D + + ++ D GLA  +  K    +
Sbjct: 94  MERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVEL--KDGKTI 151

Query: 61  ARE--LTGYILPPIDSTAFYSH 80
            +     GY+ P I     YS+
Sbjct: 152 TQRAGTNGYMAPEILKEEPYSY 173

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L +I+ GL++ H + ++HRDLKP N+ I+    +K+ DFGLA
Sbjct: 109 FLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 47.7 bits (113), Expect = 5e-06
 Identities = 19/50 (38%), Positives = 32/50 (64%), Gaps = 3/50 (6%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA---TNILQK 55
           R+++E L ++HS  IIHRDLK  N+ +  +  +K+ DFG++      LQ+
Sbjct: 117 RQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQR 166

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|223009 PHA03211, PHA03211, serine/threonine kinase US3; Provisional

 Score = 48.4 bits (115), Expect = 5e-06
 Identities = 16/41 (39%), Positives = 29/41 (70%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           R+++  + +IH +GIIHRD+K  N+ ++  + + +GDFG A
Sbjct: 267 RQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAA 307

Length = 461

>gnl|CDD|237097 PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 9/128 (7%)

Query: 321 KLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVMT---RGGSIVTLPHDLRIPF 373
            L  +F+ +G    +TP L     +++      E    + T   +G   + L +DL IPF
Sbjct: 27  ALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPF 86

Query: 374 ARYLAQNGSI-VSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCL 432
           A+ +A N +I +  KRY I +VFR+  +     RE  +C  DIV     V+    L    
Sbjct: 87  AKVVAMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIV-GVESVMAEAELMSMA 145

Query: 433 MGSFRRFN 440
              FRR N
Sbjct: 146 FELFRRLN 153

Length = 423

>gnl|CDD|173704 cd05613, STKc_MSK1_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
           EI+  L H+H  GII+RD+K  NI +D   HV + DFGL+    +
Sbjct: 113 EIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHE 157

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydrophobic motif (HM) of NTD, which facilitates the phosphorylation of the A-loop and activates the NTD, which in turn phosphorylates downstream targets. MSK1 plays a role in the regulation of translational control and transcriptional activation. It phosphorylates the transcription factors, CREB and NFkappaB. It also phosphorylates the nucleosomal proteins H3 and HMG-14. Increased phosphorylation of MEK1 is associated with the development of cerebral ischemic/hypoxic preconditioning. Length = 290

>gnl|CDD|173758 cd08218, STKc_Nek1, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 18/40 (45%), Positives = 28/40 (70%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I   L H+H + I+HRD+K  NIF+  +  +K+GDFG+A
Sbjct: 109 QICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIA 148

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycystic kidney disease, which is characterized by benign polycystic tumors formed by abnormal overgrowth of renal epithelial cells. It appears also to be involved in DNA damage response, and may be important for both correct DNA damage checkpoint activation and DNA repair. Length = 256

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 46.9 bits (111), Expect = 9e-06
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L +++ GL++ H + ++HRDLKP N+ I+    +K+ DFGLA
Sbjct: 109 FLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLA 151

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 47.0 bits (111), Expect = 9e-06
 Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 65/247 (26%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE----DHVKIGDFGLATNILQKHAGPLAR 62
           LL +I++G+ ++H+  ++HRDLKP NI +  E      VKI D G A  +      PLA 
Sbjct: 113 LLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA-RLFNSPLKPLAD 171

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                 L P+               V T  Y APEL                +++K    
Sbjct: 172 ------LDPV---------------VVTFWYRAPEL-----------LLGARHYTKA--- 196

Query: 123 FYVEILRVLWGYLKAEVYKDRP---------KTLEELKHNIRRENGPSTGSNVQKSLQKF 173
             ++I  +  G + AE+    P         KT     H+         G    K  +  
Sbjct: 197 --IDIWAI--GCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDI 252

Query: 174 QKSP--PSVYREWR------SSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS 225
           +K P  P++ +++R      SS      ++ +K + + FL+L   QK  L  DP+KR +S
Sbjct: 253 RKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFLLL---QK-LLTMDPTKRITS 308

Query: 226 EQNLCQP 232
           EQ L  P
Sbjct: 309 EQALQDP 315

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|173682 cd05591, STKc_nPKC_epsilon, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

 Score = 47.1 bits (112), Expect = 1e-05
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           E+   L  +H  G+I+RDLK  NI +D E H K+ DFG+
Sbjct: 104 EVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGM 142

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to neoplastic transformation depending on the cell type. It contributes to oncogenesis by inducing disordered cell growth and inhibiting cell death. It also plays a role in tumor invasion and metastasis. PKC-epsilon has also been found to confer cardioprotection against ischemia and reperfusion-mediated damage. Other cellular functions include the regulation of gene expression, cell adhesion, and cell motility. Length = 321

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           EI +G++++ ++  +HRDL   N  +  +  VKIGDFG+  +I
Sbjct: 127 EIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDI 169

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|173759 cd08219, STKc_Nek3, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 14  GLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--YILPP 71
           G+ HIH + ++HRD+K  NIF+     VK+GDFG A   L    G  A    G  Y +PP
Sbjct: 112 GVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSAR--LLTSPGAYACTYVGTPYYVPP 169

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activation of Vav2 and contributes to prolactin-mediated motility of breast cancer cells. Length = 255

>gnl|CDD|173765 cd08225, STKc_Nek5, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 7/88 (7%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHV-KIGDFGLATNILQKHAGPLARELTG-- 66
           +I  GL HIH + I+HRD+K  NIF+     V K+GDFG+A  +    +  LA    G  
Sbjct: 109 QISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQL--NDSMELAYTCVGTP 166

Query: 67  -YILPPIDSTAFYSHDTSHTGQVGTALY 93
            Y+ P I     Y++ T     +G  LY
Sbjct: 167 YYLSPEICQNRPYNNKTD-IWSLGCVLY 193

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown. Length = 257

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           RE ++ L  +HS  +IHRD+K  NI +  +  VK+ DFG    I
Sbjct: 122 RECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI 165

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|173640 cd05067, PTKc_Lck_Blk, Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I EG++ I  +  IHRDL+  NI +      KI DFGLA
Sbjct: 110 QIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lck is expressed in T-cells and natural killer (NK) cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Blk is expressed specifically in B-cells. It is involved in pre-BCR (B-cell receptor) signaling. Length = 260

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 27/41 (65%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           R ++  + ++H   IIHRD+K  NIFI++   V +GDFG A
Sbjct: 189 RSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAA 229

Length = 391

>gnl|CDD|173695 cd05604, STKc_SGK3, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 22/46 (47%), Positives = 29/46 (63%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           RA     EI   L ++HS  I++RDLKP NI +D + HV + DFGL
Sbjct: 97  RARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels, and receptors. It plays a critical role in hair follicle morphogenesis and hair cycling. Length = 325

>gnl|CDD|132990 cd06659, STKc_PAK6, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 5/72 (6%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG---Y 67
           +++ L ++HSQG+IHRD+K  +I +  +  VK+ DFG    I +    P  + L G   +
Sbjct: 126 VLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDV--PKRKSLVGTPYW 183

Query: 68  ILPPIDSTAFYS 79
           + P + S   Y 
Sbjct: 184 MAPEVISRTPYG 195

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role in stress responses through its activation by the mitogen-activated protein kinase (MAPK) p38 and MAPK kinase 6 (MKK6) pathway. PAK6 is highly expressed in the brain. It is not required for viability, but together with PAK5, it is required for normal levels of locomotion and activity, and for learning and memory. Increased expression of PAK6 is found in primary and metastatic prostate cancer. PAK6 may play a role in the regulation of motility. Length = 297

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 18/52 (34%), Positives = 35/52 (67%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHA 57
           R+   +++GL+++ S  I+HRD+KP N+ ++    VK+ DFG++T ++   A
Sbjct: 99  RIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIA 150

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173693 cd05602, STKc_SGK1, Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI   L ++HS  I++RDLKP NI +D + H+ + DFGL
Sbjct: 104 EIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGL 142

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt sensitivity, memory consolidation, and cardiac repolarization. A common SGK1 variant is associated with increased blood pressure and body weight. SGK1 may also contribute to tumor growth, neurodegeneration, fibrosing disease, and ischemia. Length = 325

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 46.6 bits (110), Expect = 2e-05
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-VKIGDFGLATNIL 53
           ++   L++IHS+ I HRDLKP N+ ID   H +K+ DFG A N+L
Sbjct: 178 QLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLL 222

Length = 440

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 28/89 (31%), Positives = 44/89 (49%), Gaps = 25/89 (28%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI   L+++H +GII+RDLK  N+ +D E H+K+ D+G+    L+               
Sbjct: 104 EISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR--------------- 148

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
            P D+T+ +          GT  Y APE+
Sbjct: 149 -PGDTTSTF---------CGTPNYIAPEI 167

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 17/41 (41%), Positives = 27/41 (65%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            +I +G+S++  + ++HRDL   N+ +    HVKI DFGLA
Sbjct: 116 VQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 18/40 (45%), Positives = 25/40 (62%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I EG++++ S+  IHRDL   NI +      KI DFGLA
Sbjct: 111 QIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLA 150

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173684 cd05593, STKc_PKB_gamma, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

 Score = 45.8 bits (108), Expect = 2e-05
 Identities = 19/39 (48%), Positives = 28/39 (71%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI+  L ++HS  I++RDLK  N+ +D + H+KI DFGL
Sbjct: 103 EIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGL 141

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulated in estrogen-deficient breast cancer cells, androgen-independent prostate cancer cells, and primary ovarian tumors. It acts as a key mediator in the genesis of ovarian cancer. Length = 328

>gnl|CDD|213530 TIGR00442, hisS, histidyl-tRNA synthetase

 Score = 45.9 bits (110), Expect = 3e-05
 Identities = 30/135 (22%), Positives = 53/135 (39%), Gaps = 31/135 (22%)

Query: 301 TYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQ---TPLLTPLNSLTATS-ETTASVM 356
           T D        +  +E   + +R +F+L+G   F+   TP+            E T  V 
Sbjct: 6   TRDFLPEEMIKWQYIE---ETIREVFELYG---FKEIRTPIFEYTELFARKVGEETDIVE 59

Query: 357 T-------RGGSIVTLPHDLRIPFARYLAQNGSIVSM--KRYCIDRVFR-ERRVLGFHP- 405
                   +GG  +TL  +   P AR + +N  ++    K Y I  +FR ER      P 
Sbjct: 60  KEMYTFKDKGGRSLTLRPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYER------PQ 113

Query: 406 ----RELYECAFDIV 416
               R+ ++   +++
Sbjct: 114 KGRYRQFHQFGVEVI 128

This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff [Protein synthesis, tRNA aminoacylation]. Length = 397

>gnl|CDD|173688 cd05597, STKc_DMPK_like, Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

 Score = 45.5 bits (108), Expect = 3e-05
 Identities = 53/202 (26%), Positives = 75/202 (37%), Gaps = 44/202 (21%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH--AGPLARELT 65
           L E++  +  +H  G +HRD+KP N+ +D   H+++ DFG    +L        +A    
Sbjct: 108 LAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTP 167

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPELD--SHGVKAMYNQF---TPQNYFSKQQ 120
            YI P I              + G   Y  PE D  S GV  MY      TP        
Sbjct: 168 DYISPEILQAM----------EDGKGRY-GPECDWWSLGV-CMYEMLYGETP-------- 207

Query: 121 KAFYVEILRVLWGYLKAEVYKDR-------PKTLEELKHNIRRENGPSTGSNVQKSLQKF 173
             FY E L   +G  K   +K+            EE K  IRR          +  LQ F
Sbjct: 208 --FYAESLVETYG--KIMNHKEHFQFPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDF 263

Query: 174 QKSPPSVYREWRSSFEWSTVRN 195
           +  P      +    +W  +RN
Sbjct: 264 KDHP------FFEGIDWDNIRN 279

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy, and cardiac conduction defects. The genetic basis for DM1 is the mutational expansion of a CTG repeat in the 3'-UTR of DMPK. DMPK is expressed in skeletal and cardiac muscles, and in central nervous tissues. The functional role of DMPK is not fully understood. It may play a role in the signal transduction and homeostasis of calcium. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKgamma is expressed in heart and skeletal muscles, unlike MRCKalpha and MRCKbeta, which are expressed ubiquitously. Length = 331

>gnl|CDD|183880 PRK13184, pknD, serine/threonine-protein kinase; Reviewed

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
            +  +I   + ++HS+G++HRDLKP NI +     V I D+G A     +    L  +  
Sbjct: 117 SIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDID-- 174

Query: 66  GYILPPIDSTAFYSHDTSHTGQ-VGTALYAAPE 97
                 +D         +  G+ VGT  Y APE
Sbjct: 175 ------VDERNICYSSMTIPGKIVGTPDYMAPE 201

Length = 932

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAG 58
            ++ EG+ ++  +  +HRDL   N+ +  +   K+ DFGLA    Q    
Sbjct: 109 LDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDS 158

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|88524 cd05623, STKc_MRCK_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 45/197 (22%), Positives = 81/197 (41%), Gaps = 34/197 (17%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           L E++  +  +H    +HRD+KP NI +D   H+++ DFG    +++   G +   +   
Sbjct: 108 LAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMED--GTVQSSVA-- 163

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPELD--SHGVKAMYNQFTPQNYFSKQQKAFYV 125
               + +  + S +     + G   Y  PE D  S GV  MY     +         FY 
Sbjct: 164 ----VGTPDYISPEILQAMEDGKGKY-GPECDWWSLGV-CMYEMLYGET-------PFYA 210

Query: 126 EILRVLWGYLKAEVYKDR---PKTLEELKHN----IRRENGPSTGSNVQKSLQKFQKSPP 178
           E L   +G  K   +K+R   P  + ++  +    IRR          Q  ++ F++ P 
Sbjct: 211 ESLVETYG--KIMNHKERFQFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHP- 267

Query: 179 SVYREWRSSFEWSTVRN 195
                + +  +W  +RN
Sbjct: 268 -----FFTGIDWDNIRN 279

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathway. Length = 332

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           ++ EG++++  Q  IHRDL   NI +  +   K+ DFGLA
Sbjct: 112 QVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLA 151

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|132964 cd06633, STKc_TAO3, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 40/161 (24%), Positives = 70/161 (43%), Gaps = 22/161 (13%)

Query: 12  IEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--YIL 69
           ++GL+++HS  +IHRD+K  NI +     VK+ DFG A+      + P A    G  Y +
Sbjct: 131 LQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASK-----SSP-ANSFVGTPYWM 184

Query: 70  PPIDSTAFYSHDTSHTGQVGT----------ALYAAPELDSHGVKAMYNQFTPQNYFSKQ 119
            P         +  + G+V            A    P  + + + A+Y+    QN     
Sbjct: 185 AP--EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH--IAQNDSPTL 240

Query: 120 QKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP 160
           Q   + +  R    Y   ++ ++RP + E L+H+  R + P
Sbjct: 241 QSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDFVRRDRP 281

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a component of the RAM (regulation of Ace2p activity and cellular morphogenesis) signaling pathway. TAO3 is upregulated in retinal ganglion cells after axotomy, and may play a role in apoptosis. Length = 313

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 44.7 bits (106), Expect = 5e-05
 Identities = 16/39 (41%), Positives = 27/39 (69%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFG 47
             +++ LS +H+QG+IHRD+K  +I +  +  VK+ DFG
Sbjct: 122 LAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFG 160

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|173644 cd05079, PTKc_Jak1_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           +I +G+ ++ S+  +HRDL   N+ ++ E  VKIGDFGL   I
Sbjct: 117 QICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAI 159

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak1 is widely expressed in many tissues. Many cytokines are dependent on Jak1 for signaling, including those that use the shared receptor subunits common gamma chain (IL-2, IL-4, IL-7, IL-9, IL-15, IL-21) and gp130 (IL-6, IL-11, oncostatin M, G-CSF, and IFNs, among others). The many varied interactions of Jak1 and its ubiquitous expression suggest many biological roles. Jak1 is important in neurological development, as well as in lymphoid development and function. It also plays a role in the pathophysiology of cardiac hypertrophy and heart failure. A mutation in the ATP-binding site of Jak1 was identified in a human uterine leiomyosarcoma cell line, resulting in defective cytokine induction and antigen presentation, thus allowing the tumor to evade the immune system. Length = 284

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 24/89 (26%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           ++I+ +   H   I+HRD+KP N+ I + D +K+ DFG A N+ +               
Sbjct: 108 QLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSE--------------- 152

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                      + ++T  V T  Y +PEL
Sbjct: 153 ---------GSNANYTEYVATRWYRSPEL 172

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|132988 cd06657, STKc_PAK4, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

 Score = 44.2 bits (104), Expect = 7e-05
 Identities = 16/42 (38%), Positives = 29/42 (69%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           +++ LS +H+QG+IHRD+K  +I + ++  VK+ DFG    +
Sbjct: 125 VLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQV 166

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell morphology and cytoskeletal organization. It is essential for embryonic viability and proper neural development. Mice lacking PAK4 die due to defects in the fetal heart. In addition, their spinal cord motor neurons showed failure to differentiate and migrate. PAK4 also plays a role in cell survival and tumorigenesis. It is overexpressed in many primary tumors including colon, esophageal, and mammary tumors. PAK4 has also been implicated in viral and bacterial infection pathways. Length = 292

>gnl|CDD|132938 cd06607, STKc_TAO, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 12  IEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLAT 50
           ++GL+++HS   IHRD+K  NI +     VK+ DFG A+
Sbjct: 125 LQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSAS 163

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily members, named TAO1, TAO2, and TAO3. Length = 307

>gnl|CDD|240344 PTZ00283, PTZ00283, serine/threonine protein kinase; Provisional

 Score = 44.5 bits (105), Expect = 8e-05
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 9/80 (11%)

Query: 2   GRAWR------LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK 55
            R +R      L  +++  + H+HS+ +IHRD+K  NI +     VK+GDFG +      
Sbjct: 137 NRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAAT 196

Query: 56  HAGPLARELTG---YILPPI 72
            +  + R   G   Y+ P I
Sbjct: 197 VSDDVGRTFCGTPYYVAPEI 216

Length = 496

>gnl|CDD|132953 cd06622, PKc_MAPKK_PBS2_like, Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 1/48 (2%)

Query: 6   RLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           R+   +++GL  +  +  IIHRD+KP N+ ++    VK+ DFG++ N+
Sbjct: 106 RITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNL 153

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Polymyxin B resistance protein 2 (PBS2) from Saccharomyces cerevisiae, Wis1 from Schizosaccharomyces pombe, and related proteins. PBS2 and Wis1 are components of stress-activated MAPK cascades in budding and fission yeast, respectively. PBS2 is the specific activator of the MAPK Hog1, which plays a central role in the response of budding yeast to stress including exposure to arsenite and hyperosmotic environments. Wis1 phosphorylates and activates the MAPK Sty1 (also called Spc1 or Phh1), which stimulates a transcriptional response to a wide range of cellular insults through the bZip transcription factors Atf1, Pcr1, and Pap1. Length = 286

>gnl|CDD|234586 PRK00037, hisS, histidyl-tRNA synthetase; Reviewed

 Score = 44.0 bits (105), Expect = 1e-04
 Identities = 22/114 (19%), Positives = 42/114 (36%), Gaps = 27/114 (23%)

Query: 320 DKLRRIFQLHGGAHFQ---TPLLTPLNSLTATSETTASVMT--------RGGSIVTLPHD 368
           D +R +F+ +G   F    TP+                ++         +GG  +TL  +
Sbjct: 26  DTIREVFERYG---FSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPE 82

Query: 369 LRIPFARYLAQNGSIVSMKRYCIDRVFR-ERRVLGFHP-----RELYECAFDIV 416
              P  R + ++      K Y I  +FR ER      P     R+ ++   +++
Sbjct: 83  GTAPVVRAVIEHKLQPF-KLYYIGPMFRYER------PQKGRYRQFHQFGVEVI 129

Length = 412

>gnl|CDD|173713 cd05624, STKc_MRCK_beta, Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFG 47
           + E++  +  IH    +HRD+KP N+ +D   H+++ DFG
Sbjct: 108 IAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFG 147

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues. Length = 331

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 2   GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLA 61
           G+   + RE ++ L  +HS  +IHRD+K  NI +  +  VK+ DFG    I  + +    
Sbjct: 115 GQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 174

Query: 62  RELTGYILPP 71
              T Y + P
Sbjct: 175 MVGTPYWMAP 184

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|173763 cd08223, STKc_Nek4, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 5/76 (6%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--- 66
           +I   L ++H + I+HRDLK  N+F+   + +K+GD G+A  +L+     +A  L G   
Sbjct: 110 QIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIA-RVLENQCD-MASTLIGTPY 167

Query: 67  YILPPIDSTAFYSHDT 82
           Y+ P + S   Y++ +
Sbjct: 168 YMSPELFSNKPYNYKS 183

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown. Length = 257

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 22/70 (31%), Positives = 35/70 (50%)

Query: 2   GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLA 61
           G+   + RE ++ L  +HS  +IHRD+K  NI +  +  VK+ DFG    I  + +    
Sbjct: 116 GQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRST 175

Query: 62  RELTGYILPP 71
              T Y + P
Sbjct: 176 MVGTPYWMAP 185

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|132974 cd06643, STKc_SLK, Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA---TNILQK 55
           ++ +E L+++H   IIHRDLK  NI    +  +K+ DFG++   T  +Q+
Sbjct: 110 KQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQR 159

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration. Length = 282

>gnl|CDD|132965 cd06634, STKc_TAO2, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 18/39 (46%), Positives = 28/39 (71%)

Query: 12  IEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLAT 50
           ++GL+++HS  +IHRD+K  NI +     VK+GDFG A+
Sbjct: 125 LQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSAS 163

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. TAO2 contains a long C-terminal extension with autoinhibitory segments. It is activated by the release of this inhibition and the phosphorylation of its activation loop serine. TAO2 functions as a regulator of actin cytoskeletal and microtubule organization. In addition, it regulates the transforming growth factor-activated kinase 1 (TAK1), which is a MAPKKK that plays an essential role in the signaling pathways of tumor necrosis factor (TNF), interleukin 1 (IL-1), and Toll-like receptor (TLR). Length = 308

>gnl|CDD|132989 cd06658, STKc_PAK5, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

 Score = 43.1 bits (101), Expect = 2e-04
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           ++  LS++H+QG+IHRD+K  +I +  +  +K+ DFG    +
Sbjct: 127 VLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQV 168

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly expressed in the brain. It is not required for viability, but together with PAK6, it is required for normal levels of locomotion and activity, and for learning and memory. PAK5 cooperates with Inca (induced in neural crest by AP2) in the regulation of cell adhesion and cytoskeletal organization in the embryo and in neural crest cells during craniofacial development. PAK5 may also play a role in controlling the signaling of Raf-1, an effector of Ras, at the mitochondria. Length = 292

>gnl|CDD|132947 cd06616, PKc_MKK4, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 26/75 (34%)

Query: 23  IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT 82
           IIHRD+KP NI +D   ++K+ DFG++                G +   +DS A      
Sbjct: 129 IIHRDVKPSNILLDRNGNIKLCDFGIS----------------GQL---VDSIA------ 163

Query: 83  SHTGQVGTALYAAPE 97
             T   G   Y APE
Sbjct: 164 -KTRDAGCRPYMAPE 177

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates the downstream targets, c-Jun N-terminal kinase (JNK) and p38 MAPK, on specific threonine and tyrosine residues. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. Their activation is associated with the induction of cell death. Mice deficient in MKK4 die during embryogenesis and display anemia, severe liver hemorrhage, and abnormal hepatogenesis. MKK4 may also play roles in the immune system and in cardiac hypertrophy. It plays a major role in cancer as a tumor and metastasis suppressor. Under certain conditions, MKK4 is pro-oncogenic. Length = 288

>gnl|CDD|165476 PHA03210, PHA03210, serine/threonine kinase US3; Provisional

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 15/45 (33%), Positives = 31/45 (68%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLAT 50
            ++++++  + +IH + +IHRD+K  NIF++ +  + +GDFG A 
Sbjct: 271 AIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAM 315

Length = 501

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 32/63 (50%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYI 68
           RE ++ L  +H+  +IHRD+K  N+ +  +  VK+ DFG    I  + +       T Y 
Sbjct: 122 RECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYW 181

Query: 69  LPP 71
           + P
Sbjct: 182 MAP 184

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|132969 cd06638, STKc_myosinIIIA, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 28/46 (60%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           +L E + GL H+H    IHRD+K  NI +  E  VK+ DFG++  +
Sbjct: 129 ILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQL 174

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear hair cells. It is localized to the distal ends of actin-bundled structures. Mutations in human myosin IIIA are responsible for progressive nonsyndromic hearing loss. Human myosin IIIA possesses ATPase and kinase activities, and the ability to move actin filaments in a motility assay. It may function as a cellular transporter capable of moving along actin bundles in sensory cells. Length = 286

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 28/88 (31%)

Query: 11  IIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           ++EGL+++++   I+HRD+KP NI ++    +K+ DFG+        +G L         
Sbjct: 112 VVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGV--------SGEL--------- 154

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPE 97
             I+S A    DT     VGT+ Y +PE
Sbjct: 155 --INSIA----DTF----VGTSTYMSPE 172

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173708 cd05617, STKc_aPKC_zeta, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI   L+ +H +GII+RDLK  N+ +D + H+K+ D+G+
Sbjct: 104 EICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGM 142

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways. PKC-zeta also plays a central role in maintaining cell polarity in yeast and mammalian cells. In addition, it affects actin remodeling in muscle cells. Length = 327

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 5/64 (7%)

Query: 2   GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE----DHVKIGDFGLATNILQKHA 57
           G    LL +I++G+ ++H+  ++HRDLKP NI +  E      VKI D G A  +     
Sbjct: 108 GMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA-RLFNSPL 166

Query: 58  GPLA 61
            PLA
Sbjct: 167 KPLA 170

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|140293 PTZ00267, PTZ00267, NIMA-related protein kinase; Provisional

 Score = 42.7 bits (100), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 28/43 (65%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L  +I+  L  +HS+ ++HRDLK  NIF+     +K+GDFG +
Sbjct: 174 LFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFS 216

Length = 478

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 17/40 (42%), Positives = 27/40 (67%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I +G+S++    ++HRDL   N+ +   +HVKI DFGLA
Sbjct: 117 QIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 22/50 (44%), Positives = 31/50 (62%), Gaps = 6/50 (12%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHV-KIGDFGLATNI 52
           A+++ R    G+  + S+  IHRDL   N+ +  EDHV KI DFGLA +I
Sbjct: 138 AYQVAR----GMEFLASKKCIHRDLAARNVLVT-EDHVMKIADFGLARDI 182

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|132970 cd06639, STKc_myosinIIIB, Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 18/39 (46%), Positives = 26/39 (66%)

Query: 14  GLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           GL H+H+  IIHRD+K  NI +  E  VK+ DFG++  +
Sbjct: 140 GLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQL 178

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also present in the brain and testis. The human class IIIB myosin gene maps to a region that overlaps the locus for Bardet-Biedl syndrome, which is characterized by dysmorphic extremities, retinal dystrophy, obesity, male hypogenitalism, and renal abnormalities. Length = 291

>gnl|CDD|173762 cd08222, STKc_Nek11, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

 Score = 41.8 bits (98), Expect = 3e-04
 Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 5/64 (7%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--Y 67
           +++ G+ ++H + I+HRDLK  NIF+   + +KIGDFG++  ++   +  LA   TG  Y
Sbjct: 114 QLLLGVHYMHQRRILHRDLKAKNIFLK-NNLLKIGDFGVSRLLMG--SCDLATTFTGTPY 170

Query: 68  ILPP 71
            + P
Sbjct: 171 YMSP 174

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M checkpoint. Nek11 may also play a role in the S-phase checkpoint as well as in DNA replication and genotoxic stress responses. Length = 260

>gnl|CDD|173685 cd05594, STKc_PKB_alpha, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 18/40 (45%), Positives = 29/40 (72%), Gaps = 1/40 (2%)

Query: 10  EIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           EI+  L ++HS+  +++RDLK  N+ +D + H+KI DFGL
Sbjct: 103 EIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGL 142

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficient in PKB-alpha exhibit perinatal morbidity, growth retardation, reduction in body weight accompanied by reduced sizes of multiple organs, and enhanced apoptosis in some cell types. PKB-alpha activity has been reported to be frequently elevated in breast and prostate cancers. In some cancer cells, PKB-alpha may act as a suppressor of metastasis. Length = 325

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 18/44 (40%), Positives = 24/44 (54%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           R+  E+  GL  +H    IH DL   N  +  +  VKIGD+GLA
Sbjct: 104 RMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLA 147

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|132966 cd06635, STKc_TAO1, Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 22/163 (13%)

Query: 12  IEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG--YIL 69
           ++GL+++HS  +IHRD+K  NI +     VK+ DFG A+      A P A    G  Y +
Sbjct: 135 LQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSAS-----IASP-ANSFVGTPYWM 188

Query: 70  PPIDSTAFYSHDTSHTGQVGT----------ALYAAPELDSHGVKAMYNQFTPQNYFSKQ 119
            P         +  + G+V            A    P  + + + A+Y+    QN     
Sbjct: 189 AP--EVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAMSALYH--IAQNESPTL 244

Query: 120 QKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST 162
           Q   + +  R        ++ +DRP + E LKH       P T
Sbjct: 245 QSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRERPET 287

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuronal apoptosis. TAO1 interacts with the checkpoint proteins BubR1 and Mad2, and plays an important role in regulating mitotic progression, which is required for both chromosome congression and checkpoint-induced anaphase delay. TAO1 may play a role in protecting genomic stability. Length = 317

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 6   RLLR---EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +LL+   ++ EG+ ++ S+ ++HRDL   NI +  +   K+ DFGLA
Sbjct: 101 QLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLA 147

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 41.5 bits (97), Expect = 5e-04
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I +G++++  + ++HRDL   N+ +    HVKI DFGLA
Sbjct: 117 QIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 17/46 (36%), Positives = 28/46 (60%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK 55
           ++ +G+ ++ S+  +HRDL   N  +D    VK+ DFGLA +I  K
Sbjct: 106 QVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDK 151

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173641 cd05072, PTKc_Lyn, Catalytic domain of the Protein Tyrosine Kinase, Lyn

 Score = 41.2 bits (96), Expect = 6e-04
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           +I EG+++I  +  IHRDL+  N+ +      KI DFGLA  I
Sbjct: 111 QIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVI 153

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Length = 261

>gnl|CDD|133175 cd05043, PTK_Ryk, Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 17/40 (42%), Positives = 26/40 (65%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I  G+S++H +G+IH+D+   N  ID E  VKI D  L+
Sbjct: 125 QIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALS 164

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It acts as a chemorepulsive axon guidance receptor of Wnt glycoproteins and is responsible for the establishment of axon tracts during the development of the central nervous system. In addition, studies in mice reveal that Ryk is essential in skeletal, craniofacial, and cardiac development. Thus, it appears Ryk is involved in signal transduction despite its lack of kinase activity. Ryk may function as an accessory protein that modulates the signals coming from catalytically active partner RTKs such as the Eph receptors. Length = 280

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 40.9 bits (96), Expect = 7e-04
 Identities = 14/40 (35%), Positives = 25/40 (62%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           ++  G++++ +Q  IHRDL   N+ +   +  K+ DFGLA
Sbjct: 111 QVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLA 150

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 16/40 (40%), Positives = 27/40 (67%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I +G+ ++  + ++HRDL   N+ +   +HVKI DFGLA
Sbjct: 117 QIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLA 156

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 40.7 bits (95), Expect = 8e-04
 Identities = 16/45 (35%), Positives = 31/45 (68%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
           EI +G+++++++  +HRDL   N  + ++  VKIGDFG+  +I +
Sbjct: 127 EIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYE 171

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|133204 cd05073, PTKc_Hck, Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

 Score = 40.8 bits (95), Expect = 8e-04
 Identities = 18/40 (45%), Positives = 24/40 (60%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I EG++ I  +  IHRDL+  NI +      KI DFGLA
Sbjct: 110 QIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLA 149

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Hck is present in myeloid and lymphoid cells that play a role in the development of cancer. It may be important in the oncogenic signaling of the protein Tel-Abl, which induces a chronic myelogenous leukemia (CML)-like disease. Hck also acts as a negative regulator of granulocyte colony-stimulating factor (G-CSF)-induced proliferation of granulocytic precursors, suggesting a possible role in the development of acute myeloid leukemia (AML). In addition, Hck is essential in regulating the degranulation of polymorphonuclear leukocytes (PMNs). Genetic polymorphisms affect the expression level of Hck, which affects PMN mediator release and influences the development of chronic obstructive pulmonary disease (COPD). Length = 260

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 40.7 bits (95), Expect = 9e-04
 Identities = 13/47 (27%), Positives = 31/47 (65%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           +  ++I++G++++H+  ++HRD+K  N+ +     +K+ DFG A  +
Sbjct: 106 KYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRL 152

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133237 cd05106, PTKc_CSF-1R, Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 5   WRLLR---EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNIL 53
             LLR   ++ +G+  + S+  IHRD+   N+ +      KI DFGLA +I+
Sbjct: 212 DDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIM 263

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. It leads to increases in gene transcription and protein translation, and induces cytoskeletal remodeling. CSF-1R signaling leads to a variety of cellular responses including survival, proliferation, and differentiation of target cells. It plays an important role in innate immunity, tissue development and function, and the pathogenesis of some diseases including atherosclerosis and cancer. CSF-1R signaling is also implicated in mammary gland development during pregnancy and lactation. Aberrant CSF-1/CSF-1R expression correlates with tumor cell invasiveness, poor clinical prognosis, and bone metastasis in breast cancer. Although the structure of the human CSF-1R catalytic domain is known, it is excluded from this specific alignment model because it contains a deletion in its sequence. Length = 374

>gnl|CDD|133232 cd05101, PTKc_FGFR2, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

 Score = 40.4 bits (94), Expect = 0.001
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           ++  G+ ++ SQ  IHRDL   N+ +   + +KI DFGLA ++
Sbjct: 145 QVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDV 187

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. There are many splice variants of FGFR2 which show differential expression and binding to FGF ligands. Disruption of either FGFR2 or FGFR2b is lethal in mice, due to defects in the placenta or severe impairment of tissue development including lung, limb, and thyroid, respectively. Disruption of FGFR2c in mice results in defective bone and skull development. Genetic alterations of FGFR2 are associated with many human skeletal disorders including Apert syndrome, Crouzon syndrome, Jackson-Weiss syndrome, and Pfeiffer syndrome. Length = 304

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 17/44 (38%), Positives = 29/44 (65%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNIL 53
           ++ +G++ + S+  IHRDL   N+ + +   VKI DFGLA +I+
Sbjct: 149 QVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIM 192

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|223069 PHA03390, pk1, serine/threonine-protein kinase 1; Provisional

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNI 52
           ++R+++E L+ +H   IIH D+K  N+  D  +D + + D+GL   I
Sbjct: 114 IIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKII 160

Length = 267

>gnl|CDD|236586 PRK09605, PRK09605, bifunctional UGMP family protein/serine/threonine protein kinase; Validated

 Score = 40.3 bits (95), Expect = 0.002
 Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA--TNILQKHA 57
           L+R++ E ++ +H  GI+H DL   N  +  +    I DFGL   +++++  A
Sbjct: 433 LVRKVGEIVAKLHKAGIVHGDLTTSNFIVRDDRLYLI-DFGLGKYSDLIEDKA 484

Length = 535

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
           EI +G++++++   +HRDL   N  +  +  VKIGDFG+  +I +
Sbjct: 127 EIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYE 171

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 18/43 (41%), Positives = 26/43 (60%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           ++  G+  + S+  IHRDL   NI +   + VKI DFGLA +I
Sbjct: 182 QVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDI 224

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173652 cd05100, PTKc_FGFR3, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           ++  G+ ++ SQ  IHRDL   N+ +  ++ +KI DFGLA ++
Sbjct: 142 QVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDV 184

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Many FGFR3 splice variants have been reported with the IIIb and IIIc isoforms being the predominant forms. FGFR3 IIIc is the isoform expressed in chondrocytes, the cells affected in dwarfism, while IIIb is expressed in epithelial cells. FGFR3 ligands include FGF1, FGF2, FGF4, FGF8, FGF9, and FGF23. It is a negative regulator of long bone growth. In the cochlear duct and in the lens, FGFR3 is involved in differentiation while it appears to have a role in cell proliferation in epithelial cells. Germline mutations in FGFR3 are associated with skeletal disorders including several forms of dwarfism. Some missense mutations are associated with multiple myeloma and carcinomas of the bladder and cervix. Overexpression of FGFR3 is found in thyroid carcinoma. Length = 334

>gnl|CDD|133230 cd05099, PTKc_FGFR4, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 15/43 (34%), Positives = 27/43 (62%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           ++  G+ ++ S+  IHRDL   N+ +  ++ +KI DFGLA  +
Sbjct: 142 QVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGV 184

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Unlike other FGFRs, there is only one splice form of FGFR4. It binds FGF1, FGF2, FGF6, FGF19, and FGF23. FGF19 is a selective ligand for FGFR4. Although disruption of FGFR4 in mice causes no obvious phenotype, in vivo inhibition of FGFR4 in cultured skeletal muscle cells resulted in an arrest of muscle progenitor differentiation. FGF6 and FGFR4 are uniquely expressed in myofibers and satellite cells. FGF6/FGFR4 signaling appears to play a key role in the regulation of muscle regeneration. A polymorphism in FGFR4 is found in head and neck squamous cell carcinoma. Length = 314

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGL 48
           L  ++  G++++ S+  +HRDL   N+ +      KI DFG+
Sbjct: 100 LAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGM 141

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 17/45 (37%), Positives = 30/45 (66%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNIL 53
           +++ EG++++ S+  IHRDL   N  +D +  VK+ DFGL+  +L
Sbjct: 107 KDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVL 151

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133229 cd05098, PTKc_FGFR1, Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 16/43 (37%), Positives = 28/43 (65%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           ++  G+ ++ S+  IHRDL   N+ +  ++ +KI DFGLA +I
Sbjct: 148 QVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 190

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. Alternative splicing of FGFR1 transcripts produces a variety of isoforms, which are differentially expressed in cells. FGFR1 binds the ligands, FGF1 and FGF2, with high affinity and has also been reported to bind FGF4, FGF6, and FGF9. FGFR1 signaling is critical in the control of cell migration during embryo development. It promotes cell proliferation in fibroblasts. Nuclear FGFR1 plays a role in the regulation of transcription. Mutations, insertions or deletions of FGFR1 have been identified in patients with Kallman's syndrome (KS), an inherited disorder characterized by hypogonadotropic hypogonadism and loss of olfaction. Aberrant FGFR1 expression has been found in some human cancers including 8P11 myeloproliferative syndrome (EMS), breast cancer, and pancreatic adenocarcinoma. Length = 307

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 39.2 bits (91), Expect = 0.003
 Identities = 16/48 (33%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 11  IIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHA 57
           +I+GL+++  +  I+HRD+KP NI ++    +K+ DFG++  ++   A
Sbjct: 112 VIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMA 159

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 39.0 bits (91), Expect = 0.003
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNIL 53
           ++ E + ++ S G IHRDL   N  +  ++ VK+ DFGLA  +L
Sbjct: 108 DVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVL 151

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|165211 PHA02882, PHA02882, putative serine/threonine kinase; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 16/47 (34%), Positives = 31/47 (65%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNIL 53
           ++++++  L +IH  GI H D+KP NI +D  +   I D+G+A++ +
Sbjct: 131 IMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFI 177

Length = 294

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 32/90 (35%)

Query: 11  IIEGLSHI---HSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           ++ GL+++   H   I+HRD+KP NI ++    +K+ DFG+        +G L       
Sbjct: 108 VLRGLTYLREKHK--IMHRDVKPSNILVNSRGEIKLCDFGV--------SGQL------- 150

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
               IDS A           VGT  Y +PE
Sbjct: 151 ----IDSMA--------NSFVGTRSYMSPE 168

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|240167 cd05144, RIO2_C, RIO kinase family; RIO2, C-terminal catalytic domain

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 15/40 (37%), Positives = 24/40 (60%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDF 46
           +L EI+E +   +  GIIH DL   NI +D ++ + I D+
Sbjct: 130 VLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDW 169

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH domains may be involved in RNA recognition. RIO2 is essential for survival and is necessary for rRNA cleavage during 40S ribosomal subunit maturation. The biological substrates of RIO2 are still unknown. Length = 198

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           +I  G+ ++ S   +HRDL   N  +     VKI DFGL+ +I
Sbjct: 132 QIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDI 174

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	454
KOG1035|consensus	1351		100.0
COG0124	429	HisS Histidyl-tRNA synthetase [Translation, riboso	100.0
PLN02972	763	Histidyl-tRNA synthetase	100.0
KOG1936|consensus	518		100.0
KOG0615|consensus	475		100.0
KOG0661|consensus	538		100.0
PRK12292	391	hisZ ATP phosphoribosyltransferase regulatory subu	100.0
KOG0598|consensus	357		100.0
KOG0660|consensus	359		100.0
PLN02530	487	histidine-tRNA ligase	100.0
KOG0581|consensus	364		100.0
PRK12420	423	histidyl-tRNA synthetase; Provisional	100.0
KOG0575|consensus	592		100.0
CHL00201	430	syh histidine-tRNA synthetase; Provisional	100.0
PRK12421	392	ATP phosphoribosyltransferase regulatory subunit;	100.0
KOG0592|consensus	604		99.98
KOG0594|consensus	323		99.97
PF13393	311	tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI	99.97
KOG0659|consensus	318		99.97
TIGR00443	314	hisZ_biosyn_reg ATP phosphoribosyltransferase, reg	99.97
KOG0663|consensus	419		99.97
KOG0593|consensus	396		99.97
KOG0600|consensus	560		99.97
KOG0658|consensus	364		99.97
PRK12295	373	hisZ ATP phosphoribosyltransferase regulatory subu	99.97
KOG0033|consensus	355		99.97
KOG0599|consensus	411		99.97
PRK12293	281	hisZ ATP phosphoribosyltransferase regulatory subu	99.97
cd00773	261	HisRS-like_core Class II Histidinyl-tRNA synthetas	99.97
KOG0616|consensus	355		99.97
KOG0667|consensus	586		99.97
KOG0578|consensus	550		99.97
KOG0198|consensus	313		99.96
KOG0588|consensus	786		99.96
KOG0583|consensus	370		99.96
TIGR00442	397	hisS histidyl-tRNA synthetase. This model finds a	99.96
KOG0694|consensus	694		99.96
KOG0591|consensus	375		99.96
COG3705	390	HisZ ATP phosphoribosyltransferase involved in his	99.96
KOG0671|consensus	415		99.96
KOG0605|consensus	550		99.96
KOG0582|consensus	516		99.96
KOG0665|consensus	369		99.96
PRK00037	412	hisS histidyl-tRNA synthetase; Reviewed	99.95
KOG0986|consensus	591		99.95
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.95
KOG0597|consensus	808		99.95
KOG0579|consensus	1187		99.95
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.95
KOG0585|consensus	576		99.95
KOG0666|consensus	438		99.95
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.95
PHA03212	391	serine/threonine kinase US3; Provisional	99.95
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.95
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.95
KOG0201|consensus	467		99.95
KOG0669|consensus	376		99.95
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.94
PTZ00036	440	glycogen synthase kinase; Provisional	99.94
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.94
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.94
PTZ00284	467	protein kinase; Provisional	99.94
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.94
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.94
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.94
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.94
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.94
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.94
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.94
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.94
KOG0604|consensus	400		99.94
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.94
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.94
PHA03209	357	serine/threonine kinase US3; Provisional	99.94
KOG0595|consensus	429		99.94
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.94
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.94
KOG0610|consensus	459		99.94
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.94
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.94
KOG0596|consensus	677		99.94
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.94
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.94
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.94
KOG0577|consensus	948		99.94
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.94
KOG0662|consensus	292		99.94
PHA03211	461	serine/threonine kinase US3; Provisional	99.94
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.94
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.94
PHA03207	392	serine/threonine kinase US3; Provisional	99.94
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.94
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.93
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.93
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.93
KOG0032|consensus	382		99.93
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.93
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.93
KOG0983|consensus	391		99.93
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.93
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.93
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.93
PHA03210	501	serine/threonine kinase US3; Provisional	99.93
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.93
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.93
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.93
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.93
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.93
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.93
KOG0603|consensus	612		99.93
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.93
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.93
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.93
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.93
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.93
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.93
KOG0589|consensus	426		99.93
PTZ00283	496	serine/threonine protein kinase; Provisional	99.93
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.93
KOG0690|consensus	516		99.93
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.93
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.93
KOG0192|consensus	362		99.93
KOG4645|consensus	1509		99.93
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.93
KOG0664|consensus	449		99.93
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.93
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.93
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.92
KOG0580|consensus	281		99.92
PTZ00267	478	NIMA-related protein kinase; Provisional	99.92
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.92
KOG4279|consensus	1226		99.92
KOG0670|consensus	752		99.92
KOG0574|consensus	502		99.92
PRK12294	272	hisZ ATP phosphoribosyltransferase regulatory subu	99.92
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.92
KOG0611|consensus	668		99.92
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.92
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.92
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.92
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.92
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.92
KOG0614|consensus	732		99.92
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.92
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.92
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.92
KOG0584|consensus	632		99.92
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.92
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.92
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.92
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.92
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.92
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.91
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.91
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.91
KOG4236|consensus	888		99.91
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.91
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.91
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.91
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.91
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.91
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.91
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.91
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.91
KOG4717|consensus	864		99.91
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.91
KOG0607|consensus	463		99.91
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.91
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.91
KOG0696|consensus	683		99.91
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.91
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.91
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.91
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.91
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.91
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.91
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.91
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.91
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.9
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.9
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.9
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.9
KOG0197|consensus	468		99.9
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.9
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.9
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.9
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.9
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.9
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.9
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.9
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.9
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.9
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.9
KOG0612|consensus	1317		99.9
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.9
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.9
PLN00181	793	protein SPA1-RELATED; Provisional	99.9
KOG4721|consensus	904		99.9
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.9
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.9
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.9
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.9
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.9
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.9
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.9
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.9
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.9
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.9
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.9
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.9
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.9
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.9
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.9
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.9
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.9
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.9
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.9
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.9
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.9
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.89
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.89
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.89
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.89
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.89
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.89
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.89
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.89
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.89
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.89
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.89
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.89
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.89
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.89
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.89
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.89
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.89
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.89
KOG1027|consensus	903		99.89
KOG2345|consensus	302		99.89
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.89
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.89
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.89
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.89
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.89
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.89
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.89
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.89
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.89
PHA02988	283	hypothetical protein; Provisional	99.89
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.89
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.89
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.89
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.89
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.89
PHA02882	294	putative serine/threonine kinase; Provisional	99.89
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.89
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.89
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.89
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.89
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.89
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.89
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.89
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.89
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.89
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.89
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.89
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.88
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.88
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.88
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.88
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	99.88
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.88
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.88
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.88
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.88
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.88
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.88
PLN00009	294	cyclin-dependent kinase A; Provisional	99.88
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.88
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.88
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.88
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.88
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.88
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.88
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.88
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.88
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.88
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.88
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.88
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.88
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.88
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.88
KOG1290|consensus	590		99.88
KOG0695|consensus	593		99.88
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.88
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.88
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.88
KOG0193|consensus	678		99.88
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.88
KOG0668|consensus	338		99.88
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.88
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.88
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.88
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.88
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.88
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.88
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.88
KOG1989|consensus	738		99.88
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.88
KOG0586|consensus	596		99.88
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.88
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.88
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.88
KOG1006|consensus	361		99.88
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.88
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.88
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.88
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.88
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.88
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.87
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.87
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.87
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.87
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.87
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.87
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.87
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.87
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.87
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.87
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.87
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.87
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.87
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.87
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.87
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.87
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.87
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.87
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.87
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.87
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.87
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.87
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.87
KOG1167|consensus	418		99.87
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.87
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.87
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.87
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.87
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.87
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.87
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.87
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.87
KOG0608|consensus	1034		99.87
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.86
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.86
KOG0587|consensus	953		99.86
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.86
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.86
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.86
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.86
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.86
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.86
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.86
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.86
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.86
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.86
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.86
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.86
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.86
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.86
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.86
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.86
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.85
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.85
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.85
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.85
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.85
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.85
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.85
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.85
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.85
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.85
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.85
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.85
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.85
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.85
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.85
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.85
PRK12305	575	thrS threonyl-tRNA synthetase; Reviewed	99.84
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.84
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.84
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.84
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.84
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.84
KOG0576|consensus	829		99.84
cd00670	235	Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t	99.84
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.84
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.84
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.83
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.83
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.83
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.83
KOG0984|consensus	282		99.83
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.83
cd00779	255	ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla	99.82
KOG1187|consensus	361		99.81
KOG0194|consensus	474		99.81
cd00771	298	ThrRS_core Threonyl-tRNA synthetase (ThrRS) class	99.8
KOG1095|consensus	1025		99.8
KOG1026|consensus	774		99.8
KOG1151|consensus	775		99.79
TIGR00418	563	thrS threonyl-tRNA synthetase. This model represen	99.79
PRK09194	565	prolyl-tRNA synthetase; Provisional	99.77
KOG0590|consensus	601		99.76
KOG4257|consensus	974		99.76
KOG4250|consensus	732		99.76
KOG0200|consensus	609		99.76
KOG0196|consensus	996		99.75
KOG0199|consensus	1039		99.75
TIGR00409	568	proS_fam_II prolyl-tRNA synthetase, family II. Pro	99.74
PRK12444	639	threonyl-tRNA synthetase; Reviewed	99.74
KOG4278|consensus	1157		99.73
PRK14799	545	thrS threonyl-tRNA synthetase; Provisional	99.73
KOG1345|consensus	378		99.73
KOG3653|consensus	534		99.72
KOG2052|consensus	513		99.71
TIGR02367	453	PylS pyrrolysyl-tRNA synthetase. PylS is the archa	99.71
KOG1094|consensus	807		99.68
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.67
cd00772	264	ProRS_core Prolyl-tRNA synthetase (ProRS) class II	99.67
KOG0606|consensus	1205		99.67
cd00774	254	GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik	99.67
KOG1152|consensus	772		99.67
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.66
PF00587	173	tRNA-synt_2b: tRNA synthetase class II core domain	99.65
PLN02908	686	threonyl-tRNA synthetase	99.65
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	99.65
KOG1025|consensus	1177		99.62
KOG1033|consensus	516		99.62
KOG1024|consensus	563		99.61
KOG0603|consensus	612		99.58
PRK12325	439	prolyl-tRNA synthetase; Provisional	99.53
PRK09537	417	pylS pyrolysyl-tRNA synthetase; Reviewed	99.51
PTZ00326	494	phenylalanyl-tRNA synthetase alpha chain; Provisio	99.49
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.46
KOG4158|consensus	598		99.45
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.44
cd00768	211	class_II_aaRS-like_core Class II tRNA amino-acyl s	99.43
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.38
KOG1240|consensus	1431		99.38
cd00778	261	ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS)	99.38
PRK09188	365	serine/threonine protein kinase; Provisional	99.35
KOG1164|consensus	322		99.26
TIGR00408	472	proS_fam_I prolyl-tRNA synthetase, family I. Proly	99.25
PRK08661	477	prolyl-tRNA synthetase; Provisional	99.24
KOG0590|consensus	601		99.17
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.15
KOG1163|consensus	341		99.13
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.1
KOG1165|consensus	449		99.08
PRK09350	306	poxB regulator PoxA; Provisional	99.06
cd00770	297	SerRS_core Seryl-tRNA synthetase (SerRS) class II	99.04
PRK12274	218	serine/threonine protein kinase; Provisional	99.02
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.01
cd00669	269	Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl	98.96
KOG1023|consensus	484		98.91
KOG1166|consensus	974		98.91
smart00090	237	RIO RIO-like kinase.	98.88
KOG0606|consensus	1205		98.84
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.82
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.82
PRK10345	210	hypothetical protein; Provisional	98.79
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.79
PRK14879	211	serine/threonine protein kinase; Provisional	98.64
KOG2137|consensus	700		98.62
KOG0195|consensus	448		98.61
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.58
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.58
PLN02837	614	threonine-tRNA ligase	98.55
cd00777	280	AspRS_core Asp tRNA synthetase (aspRS) class II co	98.53
KOG0601|consensus	524		98.53
TIGR00414	418	serS seryl-tRNA synthetase. This model represents	98.52
PF01409	247	tRNA-synt_2d: tRNA synthetases class II core domai	98.46
PRK04173	456	glycyl-tRNA synthetase; Provisional	98.45
cd00496	218	PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe	98.41
PRK00488	339	pheS phenylalanyl-tRNA synthetase subunit alpha; V	98.41
PRK03991	613	threonyl-tRNA synthetase; Validated	98.38
TIGR00468	294	pheS phenylalanyl-tRNA synthetase, alpha subunit.	98.37
cd00776	322	AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class	98.35
PRK05431	425	seryl-tRNA synthetase; Provisional	98.3
KOG1266|consensus	458		98.29
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.26
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.19
COG0442	500	ProS Prolyl-tRNA synthetase [Translation, ribosoma	98.19
PLN02678	448	seryl-tRNA synthetase	98.13
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.12
KOG0601|consensus	524		98.09
COG0441	589	ThrS Threonyl-tRNA synthetase [Translation, riboso	98.08
PF00152	335	tRNA-synt_2: tRNA synthetases class II (D, K and N	98.05
COG4248	637	Uncharacterized protein with protein kinase and he	98.05

>KOG1035|consensus

Probab=100.00  E-value=3.3e-58  Score=491.48  Aligned_cols=365  Identities=37%  Similarity=0.566  Sum_probs=285.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhh-cCCCccccccCccCCCCCCCCcc-c
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK-HAGPLARELTGYILPPIDSTAFY-S   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~   79 (454)
                      +++|++|+||++||.|+|++|||||||||.|||++.+++|||+|||+|+..... ......         ........ .
T Consensus       697 d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~~~~~~~d~~---------~~~~~~~~g~  767 (1351)
T KOG1035|consen  697 DEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLKENLESIDQD---------LSFSTNRAGS  767 (1351)
T ss_pred             HHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhhhhhhhHhhc---------cCccccccCC
Confidence            478999999999999999999999999999999999999999999999963210 000000         00000011 2


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .....|+.+||..|+|||++.......|+.|+  |||||              |+++|||+---....+..         
T Consensus       768 ~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~Ki--DmYSL--------------GIVlFEM~yPF~TsMERa---------  822 (1351)
T KOG1035|consen  768 NDGDLTSQVGTALYVAPELLSDTSSNKYNSKI--DMYSL--------------GIVLFEMLYPFGTSMERA---------  822 (1351)
T ss_pred             CCcccccccceeeeecHHHhcccccccccchh--hhHHH--------------HHHHHHHhccCCchHHHH---------
Confidence            34478889999999999999843334799999  99999              999999543111111111         


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                              ..+..+. .+..+.+..   |.      ....+...++|     +|||++||++||||.             
T Consensus       823 --------~iL~~LR-~g~iP~~~~---f~------~~~~~~e~slI-----~~Ll~hdP~kRPtA~-------------  866 (1351)
T KOG1035|consen  823 --------SILTNLR-KGSIPEPAD---FF------DPEHPEEASLI-----RWLLSHDPSKRPTAT-------------  866 (1351)
T ss_pred             --------HHHHhcc-cCCCCCCcc---cc------cccchHHHHHH-----HHHhcCCCccCCCHH-------------
Confidence                    0111111 222222211   21      12236677899     999999999999999             


Q ss_pred             CCCCccCccccccCCCCCCCCcchHHHHHHHHHHhcCCCChhHHHHHHHHhCCCCCCccccccccccCC-----chhhHH
Q psy7309         240 SGLSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPADDITYDISLSR-----SANFSL  314 (454)
Q Consensus       240 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~q~~~~~~d~~yD~~~~~-----~~~~~~  314 (454)
                               +||+|+++||   ++.++.....+++.+++.+.+....+.+|.+....+.++.||.+...     +-...+
T Consensus       867 ---------eLL~s~llpp---e~~el~~~~~h~~~~~~~k~~~~~~~~~~~q~~~~~~n~~yd~~~~~~~~~~~~~~~l  934 (1351)
T KOG1035|consen  867 ---------ELLNSELLPP---EESELLVFLQHLYIEQLGKAYKNLLQLIFEQEVLEVLNHQYDLDRLSYIQYTEINNEL  934 (1351)
T ss_pred             ---------HHhhccCCCc---cchHHHHHHHHHHHHHHHHHHhchhhHHHHHhhhhhhccccccccccccccchhHHHH
Confidence                     6777777776   66778888898999999999999999999999999999999997731     233348


Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeEeecCc
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRV  394 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~y~g~v  394 (454)
                      ++++++.+.++|++|||+++.||.+-+...-.....+.+.++|.+|.+|.|++|||.||||++++|. ...+|+|++++|
T Consensus       935 ~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N~-~~~~Kry~i~rV 1013 (1351)
T KOG1035|consen  935 REYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSRNS-VLSFKRYCISRV 1013 (1351)
T ss_pred             HHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeeccccchHHHHhhhch-HHHHHHhhhhee
Confidence            9999999999999999999999965544433223468999999999999999999999999999987 899999999999


Q ss_pred             cccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh-CCCCCcEEEcCccc
Q psy7309         395 FRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR-FNYGNISFAPHPRV  452 (454)
Q Consensus       395 fR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~-~~~~~~~i~i~~~~  452 (454)
                      ||... .. +|+|++||+|||||++.+ ..|||++.++.|++.. |--+++.|.+||-.
T Consensus      1014 yr~~~-~~-hP~~~~ec~fDii~~t~s-l~~AE~L~vi~Ei~~~~l~~~n~~i~lnH~~ 1069 (1351)
T KOG1035|consen 1014 YRPAI-HN-HPKECLECDFDIIGPTTS-LTEAELLKVIVEITTEILHEGNCDIHLNHAD 1069 (1351)
T ss_pred             ecccc-cC-CCccccceeeeEecCCCC-ccHHHHHHHHHHHHHHHhccCceeEEeChHH
Confidence            99866 44 999999999999999944 9999999999998866 33378999999864

>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-37  Score=308.62  Aligned_cols=153  Identities=18%  Similarity=0.292  Sum_probs=143.5

Q ss_pred             CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCCCCeEe
Q psy7309         293 KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRGGSIVT  364 (454)
Q Consensus       293 ~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~G~~~~  364 (454)
                      .+.++.|++       |.++..+++|+++++++|++|||.+|.||+||+.++|..+        .++||.|.|++|+.++
T Consensus         6 ~prG~~D~l-------p~d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~la   78 (429)
T COG0124           6 RPRGTRDFL-------PEDMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLA   78 (429)
T ss_pred             CCCCccccC-------hHHHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEE
Confidence            466788888       7788899999999999999999999999999999999642        2789999999999999


Q ss_pred             eCCCCCHHHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCC
Q psy7309         365 LPHDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYG  442 (454)
Q Consensus       365 Lr~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~  442 (454)
                      ||||+|+|+||+++.|..  ..|+|+||+|+||||++||+||+|||+|||||+||.+ ++.+|||+|+|+.++|++||++
T Consensus        79 LRpe~Tapv~R~~~en~~~~~~p~k~yy~g~vfRyErPQ~GR~RqF~Q~g~E~iG~~-~~~~DAEvi~l~~~~l~~lGi~  157 (429)
T COG0124          79 LRPELTAPVARAVAENKLDLPKPLKLYYFGPVFRYERPQKGRYRQFYQFGVEVIGSD-SPDADAEVIALAVEILEALGIG  157 (429)
T ss_pred             ecccCcHHHHHHHHhccccccCCeeEEEecceecCCCCCCCCceeeEEcCeEEeCCC-CcccCHHHHHHHHHHHHHcCCC
Confidence            999999999999998864  4799999999999999999999999999999999999 8999999999999999999999


Q ss_pred             CcEEEcCcccc
Q psy7309         443 NISFAPHPRVL  453 (454)
Q Consensus       443 ~~~i~i~~~~~  453 (454)
                      +|+|+|||+++
T Consensus       158 ~~~l~iN~~g~  168 (429)
T COG0124         158 GFTLEINSRGI  168 (429)
T ss_pred             cEEEEEcCccc
Confidence            99999999985

>PLN02972 Histidyl-tRNA synthetase

Probab=100.00  E-value=5.4e-35  Score=309.76  Aligned_cols=155  Identities=26%  Similarity=0.431  Sum_probs=143.8

Q ss_pred             CCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----ccccEEEEcCCCCeEeeC
Q psy7309         291 NQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVMTRGGSIVTLP  366 (454)
Q Consensus       291 ~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~~~~~~~~d~~G~~~~Lr  366 (454)
                      -+.+.++.|++       |.++..+++|+++|+++|++|||.+|+||+||++++|..+    .+++|+|.|++|+.++||
T Consensus       327 ~k~PkGtrD~l-------P~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLR  399 (763)
T PLN02972        327 PKIPKGTRDFA-------KEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLR  399 (763)
T ss_pred             cCCCCCCccCC-------HHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeC
Confidence            37778899998       8888899999999999999999999999999999998543    257999999999999999


Q ss_pred             CCCCHHHHHHHHHcCCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEE
Q psy7309         367 HDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       367 ~d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i  446 (454)
                      ||+|+||||++|+|. ..|+|+||+|+|||++++++||+|||+||||||||...+..+|+|+|.++.++|+.+|+++|+|
T Consensus       400 PDlTvPiAR~vA~n~-~~p~KrYyiG~VFR~e~pqkGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~LGi~df~I  478 (763)
T PLN02972        400 YDLTVPFARYVAMNG-ITSFKRYQIAKVYRRDNPSKGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDELDIGTYEV  478 (763)
T ss_pred             CCChHHHHHHHHhCC-CCcceEEEeccEEecCCCCCCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHhCCCCceEE
Confidence            999999999999986 6799999999999999999999999999999999985366799999999999999999999999


Q ss_pred             EcCcccc
Q psy7309         447 APHPRVL  453 (454)
Q Consensus       447 ~i~~~~~  453 (454)
                      +|||+++
T Consensus       479 ~INh~~i  485 (763)
T PLN02972        479 KLNHRKL  485 (763)
T ss_pred             EeCCHHH
Confidence            9999985

>KOG1936|consensus

Probab=100.00  E-value=3.3e-35  Score=284.64  Aligned_cols=153  Identities=27%  Similarity=0.481  Sum_probs=142.2

Q ss_pred             CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----ccccEEEEcCCCCeEeeCCC
Q psy7309         293 KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVMTRGGSIVTLPHD  368 (454)
Q Consensus       293 ~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~~~~~~~~d~~G~~~~Lr~d  368 (454)
                      .+.+++|+.       |.++.+|++|++.+..+|++||++.|+||+||-.+++..+    ++.+|-|.|++|+.++||||
T Consensus        62 tPKGTrD~~-------p~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYD  134 (518)
T KOG1936|consen   62 TPKGTRDFS-------PEQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYD  134 (518)
T ss_pred             CCCCCCcCC-------HHHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecc
Confidence            445677777       8999999999999999999999999999999999997653    46799999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCceeeEeecCccccCCC--CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEE
Q psy7309         369 LRIPFARYLAQNGSIVSMKRYCIDRVFRERRV--LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       369 ~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~--~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i  446 (454)
                      ||+|||||+|+|+ +..+|||+|++|||++.|  -+||+|||+||+|||.|.-+.+.+|+|++.++.++|+.||+++|.|
T Consensus       135 LTVPfARylAmNk-i~sikRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG~~d~M~pdaE~lkiv~e~L~~l~Igd~~i  213 (518)
T KOG1936|consen  135 LTVPFARYLAMNK-ITSIKRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAGQFDPMIPDAECLKIVVEILSRLGIGDYGI  213 (518)
T ss_pred             cccHHHHHHHHcc-cccceeeeEEEEEeccCchhhchhhhhhhccCccccccCCCCCchHHHHHHHHHHHhhcCccceEE
Confidence            9999999999996 999999999999999887  6899999999999999966589999999999999999999999999


Q ss_pred             EcCcccc
Q psy7309         447 APHPRVL  453 (454)
Q Consensus       447 ~i~~~~~  453 (454)
                      ++|||++
T Consensus       214 KvNhRki  220 (518)
T KOG1936|consen  214 KVNHRKI  220 (518)
T ss_pred             EecHHHH
Confidence            9999986

>KOG0615|consensus

Probab=100.00  E-value=3.1e-35  Score=285.25  Aligned_cols=164  Identities=28%  Similarity=0.400  Sum_probs=129.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC---CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE---DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~---~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .-+-+++|++.|+.|||++||+||||||+|||+..+   ..+||+|||+|+...                          
T Consensus       277 ~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g--------------------------  330 (475)
T KOG0615|consen  277 LGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSG--------------------------  330 (475)
T ss_pred             hhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhccc--------------------------
Confidence            346799999999999999999999999999999877   579999999999763                          


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ....+.+.||||.|.|||++...+...|..++  ||||+              ||++|-+++|.+               
T Consensus       331 ~~sfm~TlCGTpsYvAPEVl~~kg~~~~~~kV--DiWSl--------------GcvLfvcLsG~p---------------  379 (475)
T KOG0615|consen  331 EGSFMKTLCGTPSYVAPEVLASKGVEYYPSKV--DIWSL--------------GCVLFVCLSGYP---------------  379 (475)
T ss_pred             cceehhhhcCCccccChhheecCCeecccchh--eeeec--------------cceEEEEeccCC---------------
Confidence            24567889999999999999865555566688  99999              999999988766               


Q ss_pred             CCCCchhhh-hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQK-SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ||.+..... ..+++.++.....|.     .|..     .+.++.+||     .+||..||++|||++|+|+||||+...
T Consensus       380 PFS~~~~~~sl~eQI~~G~y~f~p~-----~w~~-----Iseea~dlI-----~~mL~VdP~~R~s~~eaL~hpW~~~~~  444 (475)
T KOG0615|consen  380 PFSEEYTDPSLKEQILKGRYAFGPL-----QWDR-----ISEEALDLI-----NWMLVVDPENRPSADEALNHPWFKDAP  444 (475)
T ss_pred             CcccccCCccHHHHHhcCcccccCh-----hhhh-----hhHHHHHHH-----HHhhEeCcccCcCHHHHhcChhhhccc
Confidence            444443333 333344333322222     2533     447788898     999999999999999999999999543

>KOG0661|consensus

Probab=100.00  E-value=6.3e-35  Score=287.54  Aligned_cols=188  Identities=30%  Similarity=0.449  Sum_probs=151.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.|+.|++||+.||+|+|.+|+.|||+||||||+..+..+||+|||+|+.+.                          +.
T Consensus       110 ~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~--------------------------Sk  163 (538)
T KOG0661|consen  110 SDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVR--------------------------SK  163 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccc--------------------------cC
Confidence            4689999999999999999999999999999999999999999999999763                          35


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...|..+.|.+|+|||++++  .+.|+.++  ||||+              ||+++|++.-+|     .+.+++..+...
T Consensus       164 pPYTeYVSTRWYRAPEvLLr--s~~Ys~pv--D~wA~--------------GcI~aEl~sLrPLFPG~sE~Dqi~KIc~V  225 (538)
T KOG0661|consen  164 PPYTEYVSTRWYRAPEVLLR--SGYYSSPV--DMWAV--------------GCIMAELYSLRPLFPGASEIDQIYKICEV  225 (538)
T ss_pred             CCcchhhhcccccchHHhhh--ccccCCch--HHHHH--------------HHHHHHHHHhcccCCCCcHHHHHHHHHHH
Confidence            67888999999999999984  57789999  99999              999999777554     678888888877


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ++.|-...+...  ..+.......+|...+ ....++.+. .++++.++|     .+||.|||.+||||+|+|+||||+.
T Consensus       226 LGtP~~~~~~eg--~~La~~mnf~~P~~~~-~~l~~L~p~-~s~~~~~li-----~~ll~WDP~kRpTA~~al~~pffq~  296 (538)
T KOG0661|consen  226 LGTPDKDSWPEG--YNLASAMNFRFPQVKP-SPLKDLLPN-ASSEAASLI-----ERLLAWDPDKRPTASQALQHPFFQV  296 (538)
T ss_pred             hCCCccccchhH--HHHHHHhccCCCcCCC-CChHHhCcc-cCHHHHHHH-----HHHhcCCCccCccHHHHhcCccccc
Confidence            777766554332  1222223344444322 345555555 447888888     9999999999999999999999998


Q ss_pred             CCCCCC
Q psy7309         237 GSSSGL  242 (454)
Q Consensus       237 ~~~~~~  242 (454)
                      ......
T Consensus       297 ~~~~~~  302 (538)
T KOG0661|consen  297 GRASGS  302 (538)
T ss_pred             cccccc
Confidence            877543

>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=100.00  E-value=1.3e-33  Score=287.67  Aligned_cols=154  Identities=18%  Similarity=0.210  Sum_probs=141.3

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcC-CCCeEee
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTR-GGSIVTL  365 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~-~G~~~~L  365 (454)
                      +.+.++.|++       |.++..+++|+++++++|++|||.+|.||+||+++++..+     .+++|+|+|+ +|+.++|
T Consensus         4 ~~p~G~~D~l-------p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~L   76 (391)
T PRK12292          4 QLPEGIRDLL-------PEEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGL   76 (391)
T ss_pred             CCCCcchhcC-------HHHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEE
Confidence            3456778887       7888899999999999999999999999999999998543     3679999999 9999999


Q ss_pred             CCCCCHHHHHHHHHcC--CCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCC
Q psy7309         366 PHDLRIPFARYLAQNG--SIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGN  443 (454)
Q Consensus       366 r~d~T~p~aR~~a~~~--~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~  443 (454)
                      |||+|+|+||++|++.  ...|+|+||+|+|||++++++||+|||+||||||||.+ ++.+|+|+|.++.++|+.+|+++
T Consensus        77 RpD~T~~iaR~~a~~~~~~~~p~r~~y~g~vfR~~~~~~gr~ref~Q~g~EiiG~~-~~~aDaEvi~l~~~~l~~lgl~~  155 (391)
T PRK12292         77 RPDMTAQIARIAATRLANRPGPLRLCYAGNVFRAQERGLGRSREFLQSGVELIGDA-GLEADAEVILLLLEALKALGLPN  155 (391)
T ss_pred             CCCCcHHHHHHHHHhccCCCCCeEEEeeceeeecCCCcCCCccchhccceEEeCCC-CchHHHHHHHHHHHHHHHcCCCC
Confidence            9999999999999763  25799999999999999999999999999999999988 99999999999999999999999


Q ss_pred             cEEEcCcccc
Q psy7309         444 ISFAPHPRVL  453 (454)
Q Consensus       444 ~~i~i~~~~~  453 (454)
                      +.|+|||+++
T Consensus       156 ~~i~i~~~~i  165 (391)
T PRK12292        156 FTLDLGHVGL  165 (391)
T ss_pred             eEEEeccHHH
Confidence            9999999974

>KOG0598|consensus

Probab=100.00  E-value=4.4e-34  Score=275.10  Aligned_cols=173  Identities=32%  Similarity=0.432  Sum_probs=146.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.+|+.||.|||++|||||||||+|||+|.+|+++|+|||+|+...                         ..+
T Consensus       125 ~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~-------------------------~~~  179 (357)
T KOG0598|consen  125 DRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDL-------------------------KDG  179 (357)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcc-------------------------cCC
Confidence            3589999999999999999999999999999999999999999999998542                         223


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+.|||+.|||||++.   +.+|+..+  |+|||              |+++|||++|.               +|+
T Consensus       180 ~~t~tfcGT~eYmAPEil~---~~gy~~~v--DWWsL--------------GillYeML~G~---------------pPF  225 (357)
T KOG0598|consen  180 DATRTFCGTPEYMAPEILL---GKGYDKAV--DWWSL--------------GILLYEMLTGK---------------PPF  225 (357)
T ss_pred             CccccccCCccccChHHHh---cCCCCccc--chHhH--------------HHHHHHHhhCC---------------CCC
Confidence            3445589999999999999   77999999  99999              99999987764               477


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC----ChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP----SSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp----ta~e~l~hp~f~~~  237 (454)
                      .+.+..+...++.+......|...             ++++.+++     +++|..||++|.    +++++-+||||.  
T Consensus       226 ~~~~~~~~~~~I~~~k~~~~p~~l-------------s~~ardll-----~~LL~rdp~~RLg~~~d~~~ik~HpfF~--  285 (357)
T KOG0598|consen  226 YAEDVKKMYDKILKGKLPLPPGYL-------------SEEARDLL-----KKLLKRDPRQRLGGPGDAEEIKRHPFFK--  285 (357)
T ss_pred             cCccHHHHHHHHhcCcCCCCCccC-------------CHHHHHHH-----HHHhccCHHHhcCCCCChHHhhcCcccc--
Confidence            888888888888766544444432             38889999     999999999996    588999999998  


Q ss_pred             CCCCCCccCccccccCCCCCCC
Q psy7309         238 SSSGLSVLGSEQLLTCDHIPPP  259 (454)
Q Consensus       238 ~~~~~~~~~~~~ll~~~~~~~~  259 (454)
                            .++|++++.....|+.
T Consensus       286 ------~inW~~l~~k~l~PpF  301 (357)
T KOG0598|consen  286 ------GINWEKLLAKKLSPPF  301 (357)
T ss_pred             ------cCCHHHHHhcCCCCCe
Confidence                  4789999988888864

>KOG0660|consensus

Probab=100.00  E-value=8e-34  Score=272.35  Aligned_cols=185  Identities=31%  Similarity=0.415  Sum_probs=144.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.+++|||.||+|+|+.||+||||||.|+|++.+..+||||||+|+.....                       +...
T Consensus       126 H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~-----------------------~~~~  182 (359)
T KOG0660|consen  126 HAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKF-----------------------FEDG  182 (359)
T ss_pred             HHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeecccc-----------------------Cccc
Confidence            57889999999999999999999999999999999999999999999965321                       2345


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhhc
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRRE  157 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~~  157 (454)
                      ..|..+.|.+|+|||++.  ....|+..+  ||||+              |||+.||+++++     ..++++..++...
T Consensus       183 ~mTeYVaTRWYRAPElll--~~~~Yt~ai--DiWSv--------------GCI~AEmL~gkplFpG~d~v~Ql~lI~~~l  244 (359)
T KOG0660|consen  183 FMTEYVATRWYRAPELLL--NSSEYTKAI--DIWSV--------------GCILAEMLTGKPLFPGKDYVHQLQLILELL  244 (359)
T ss_pred             chhcceeeeeecCHHHHh--ccccccchh--hhhhh--------------hHHHHHHHcCCCCCCCCchHHHHHHHHHhc
Confidence            678899999999999987  368899999  99999              999999999887     6677777776666


Q ss_pred             CCCCCCchhhhh----hhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         158 NGPSTGSNVQKS----LQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       158 ~~p~~~~~~~~~----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      +.|... .....    ...+.++.+. .|    ..+|+.+.+... +.+.+|+     .+||..||.+|+||+|+|+|||
T Consensus       245 GtP~~e-~l~~i~s~~ar~yi~slp~-~p----~~~f~~~fp~a~-p~AidLl-----ekmL~fdP~kRita~eAL~hPY  312 (359)
T KOG0660|consen  245 GTPSEE-DLQKIRSEKARPYIKSLPQ-IP----KQPFSSIFPNAN-PLAIDLL-----EKMLVFDPKKRITAEEALAHPY  312 (359)
T ss_pred             CCCCHH-HHHHhccHHHHHHHHhCCC-CC----CCCHHHHcCCCC-HHHHHHH-----HHHhccCccccCCHHHHhcChh
Confidence            666332 21111    1112211111 11    134556655444 8888999     9999999999999999999999


Q ss_pred             cccCCCC
Q psy7309         234 SLEGSSS  240 (454)
Q Consensus       234 f~~~~~~  240 (454)
                      +.....+
T Consensus       313 l~~~hdp  319 (359)
T KOG0660|consen  313 LAPYHDP  319 (359)
T ss_pred             hhhhcCC
Confidence            9976654

>PLN02530 histidine-tRNA ligase

Probab=100.00  E-value=5.3e-33  Score=289.94  Aligned_cols=154  Identities=21%  Similarity=0.325  Sum_probs=143.0

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcCCCCeEeeC
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTRGGSIVTLP  366 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~~G~~~~Lr  366 (454)
                      +.+.++.|++       |.++..+++|++.++++|++|||.+|+||+||++++|..+     .+++|+|+|++|+.++||
T Consensus        71 ~~p~G~~D~l-------p~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LR  143 (487)
T PLN02530         71 NPPKGTRDFP-------PEDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALR  143 (487)
T ss_pred             CCCCCcCcCC-------HHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecC
Confidence            5677888888       8888899999999999999999999999999999998653     367999999999999999


Q ss_pred             CCCCHHHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCC--
Q psy7309         367 HDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYG--  442 (454)
Q Consensus       367 ~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~--  442 (454)
                      ||+|+|+||+++++..  ..|+|+||+|+|||++++++||+|||+||||||||.+ +..+|+|+|.++.++|+.+|++  
T Consensus       144 pD~T~~iaR~~~~~~~~~~~P~r~~y~g~vfR~e~~q~gr~REf~Q~giEiiG~~-~~~aDaEvi~l~~~~l~~lgl~~~  222 (487)
T PLN02530        144 PELTPSLARLVLQKGKSLSLPLKWFAIGQCWRYERMTRGRRREHYQWNMDIIGVP-GVEAEAELLAAIVTFFKRVGITSS  222 (487)
T ss_pred             CCCcHHHHHHHHhcccccCCCeEEEEEcCEEcCcCCCCCCccceEEcCeeEeCCC-CcchhHHHHHHHHHHHHHcCCCCC
Confidence            9999999999998643  4799999999999999999999999999999999998 9999999999999999999996  


Q ss_pred             CcEEEcCcccc
Q psy7309         443 NISFAPHPRVL  453 (454)
Q Consensus       443 ~~~i~i~~~~~  453 (454)
                      ++.|+||||++
T Consensus       223 ~~~i~i~~~~i  233 (487)
T PLN02530        223 DVGIKVSSRKV  233 (487)
T ss_pred             ceEEEEcCHHH
Confidence            79999999964

>KOG0581|consensus

Probab=100.00  E-value=1.1e-33  Score=272.34  Aligned_cols=163  Identities=29%  Similarity=0.416  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           4 AWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +-+++++|+.||.|||+ ++||||||||+|||++.+|+|||||||.++.+..                           .
T Consensus       180 L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvn---------------------------S  232 (364)
T KOG0581|consen  180 LGKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVN---------------------------S  232 (364)
T ss_pred             HHHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhh---------------------------h
Confidence            56799999999999995 9999999999999999999999999999997753                           1


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...+++||..|||||-+.   +..|+.++  |||||              |+.+.||+.|+.+....          -..
T Consensus       233 ~a~tfvGT~~YMsPERi~---g~~Ys~~s--DIWSL--------------GLsllE~a~GrfP~~~~----------~~~  283 (364)
T KOG0581|consen  233 IANTFVGTSAYMSPERIS---GESYSVKS--DIWSL--------------GLSLLELAIGRFPYPPP----------NPP  283 (364)
T ss_pred             hcccccccccccChhhhc---CCcCCccc--ceecc--------------cHHHHHHhhCCCCCCCc----------CCC
Confidence            456789999999999999   88999999  99999              99999988876421110          011


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...+.+.+..+..++++.+|+..    |        +++..+|+     ..||++||.+|||++|+++|||+.....
T Consensus       284 ~~~~~~Ll~~Iv~~ppP~lP~~~----f--------S~ef~~FV-----~~CL~Kdp~~R~s~~qLl~Hpfi~~~~~  343 (364)
T KOG0581|consen  284 YLDIFELLCAIVDEPPPRLPEGE----F--------SPEFRSFV-----SCCLRKDPSERPSAKQLLQHPFIKKFED  343 (364)
T ss_pred             CCCHHHHHHHHhcCCCCCCCccc----C--------CHHHHHHH-----HHHhcCCcccCCCHHHHhcCHHHhhccc
Confidence            23566777778878888888761    1        27888999     9999999999999999999999986443

>PRK12420 histidyl-tRNA synthetase; Provisional

Probab=100.00  E-value=5.7e-33  Score=285.97  Aligned_cols=153  Identities=26%  Similarity=0.392  Sum_probs=140.4

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-------ccccEEEEcCCCCeEe
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-------SETTASVMTRGGSIVT  364 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-------~~~~~~~~d~~G~~~~  364 (454)
                      +++.++.|++       |.++.++++|+++++++|++|||.+|+||+||+++++..+       .+++|+|+|++|+.++
T Consensus         5 ~~p~G~~d~~-------p~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~   77 (423)
T PRK12420          5 RNVKGTKDYL-------PEEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLA   77 (423)
T ss_pred             CCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceec
Confidence            4566778887       8888899999999999999999999999999999988642       1569999999999999


Q ss_pred             eCCCCCHHHHHHHHHcCC-CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCC
Q psy7309         365 LPHDLRIPFARYLAQNGS-IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGN  443 (454)
Q Consensus       365 Lr~d~T~p~aR~~a~~~~-~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~  443 (454)
                      ||||+|+|+||++|++.. ..|+|+||+|+|||++++++|++|||+||||||||.+ ++.+|+|+|.+|.++|+.+|+ +
T Consensus        78 LRpD~T~~iaR~va~~~~~~~p~r~~y~g~vfR~~~~~~gr~rE~~Q~g~EiiG~~-~~~adaEvi~la~~~l~~lg~-~  155 (423)
T PRK12420         78 LRYDLTIPFAKVVAMNPNIRLPFKRYEIGKVFRDGPIKQGRFREFIQCDVDIVGVE-SVMAEAELMSMAFELFRRLNL-E  155 (423)
T ss_pred             ccccccHHHHHHHHhCcCCCCCeeEEEEcceECCCCCCCCccceeEECCeeeECCC-CCcccHHHHHHHHHHHHHCCC-C
Confidence            999999999999998643 4699999999999999999999999999999999988 999999999999999999999 7


Q ss_pred             cEEEcCcccc
Q psy7309         444 ISFAPHPRVL  453 (454)
Q Consensus       444 ~~i~i~~~~~  453 (454)
                      +.|+|||+++
T Consensus       156 ~~i~l~~~~l  165 (423)
T PRK12420        156 VTIQYNNRKL  165 (423)
T ss_pred             EEEEEcCHHH
Confidence            9999999874

>KOG0575|consensus

Probab=100.00  E-value=1.7e-33  Score=285.43  Aligned_cols=161  Identities=34%  Similarity=0.451  Sum_probs=139.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+|+.+++||++||.|||++||||||||..|+|++.+.+|||+|||||+.+.                         ...
T Consensus       118 pEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le-------------------------~~~  172 (592)
T KOG0575|consen  118 PEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLE-------------------------YDG  172 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeec-------------------------Ccc
Confidence            3799999999999999999999999999999999999999999999999764                         234


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+.||||.|.|||++.   ..+++..+  ||||+              ||++|.|+.|+|               ||
T Consensus       173 Erk~TlCGTPNYIAPEVl~---k~gHsfEv--DiWSl--------------GcvmYtLL~G~P---------------PF  218 (592)
T KOG0575|consen  173 ERKKTLCGTPNYIAPEVLN---KSGHSFEV--DIWSL--------------GCVMYTLLVGRP---------------PF  218 (592)
T ss_pred             cccceecCCCcccChhHhc---cCCCCCch--hhhhh--------------hhHHHhhhhCCC---------------Cc
Confidence            5677899999999999999   77888899  99999              999999877765               56


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      ....+.++..++. ...+.+|...             +.++++||     ..||+.||.+|||++++|.|+||..+..+
T Consensus       219 etk~vkety~~Ik-~~~Y~~P~~l-------------s~~A~dLI-----~~lL~~~P~~Rpsl~~vL~h~Ff~~g~~p  278 (592)
T KOG0575|consen  219 ETKTVKETYNKIK-LNEYSMPSHL-------------SAEAKDLI-----RKLLRPNPSERPSLDEVLDHPFFKSGFTP  278 (592)
T ss_pred             ccchHHHHHHHHH-hcCccccccc-------------CHHHHHHH-----HHHhcCCcccCCCHHHHhcCHhhhCCCcC
Confidence            6666667777776 4456667654             38889999     99999999999999999999999766654

>CHL00201 syh histidine-tRNA synthetase; Provisional

Probab=100.00  E-value=1.8e-32  Score=282.07  Aligned_cols=154  Identities=13%  Similarity=0.131  Sum_probs=141.4

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCCCCeE
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRGGSIV  363 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~G~~~  363 (454)
                      +++.++.|++       |.++..+++|+++++++|++|||.+|.||+||+++++..+        .++||+|.|.+|+.+
T Consensus         5 ~~p~G~~D~l-------p~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l   77 (430)
T CHL00201          5 QAIRGTKDIL-------PDEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDI   77 (430)
T ss_pred             CCCCCCCcCC-------HHHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEE
Confidence            4567788888       8888899999999999999999999999999999998542        158999999999999


Q ss_pred             eeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Q psy7309         364 TLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFN  440 (454)
Q Consensus       364 ~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~  440 (454)
                      +||||+|+|+||+++.+..   ..|+|+||+|+|||+++++.||+|||+|||+|+||.. ++.+|+|+|.++.++|+.+|
T Consensus        78 ~LRpd~T~~iaR~~~~~~~~~~~~p~R~~y~g~vfR~e~~q~GR~Ref~Q~g~EiiG~~-~~~aD~Evi~l~~~~l~~lG  156 (430)
T CHL00201         78 TLRPEGTAGIVRAFIENKMDYHSNLQRLWYSGPMFRYERPQSGRQRQFHQLGIEFIGSI-DARADTEVIHLAMQIFNELQ  156 (430)
T ss_pred             EeCCCCcHHHHHHHHHccccccCCCeEEEEEcceecCCCCcCCccceeEEeceEEECCC-ChhhHHHHHHHHHHHHHHcC
Confidence            9999999999999877542   3688999999999999999999999999999999998 99999999999999999999


Q ss_pred             CCCcEEEcCcccc
Q psy7309         441 YGNISFAPHPRVL  453 (454)
Q Consensus       441 ~~~~~i~i~~~~~  453 (454)
                      +++++|+|||+++
T Consensus       157 l~~~~i~l~~~~~  169 (430)
T CHL00201        157 VKNLILDINSIGK  169 (430)
T ss_pred             CCceEEEECCCCc
Confidence            9999999999875

>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=100.00  E-value=1.1e-32  Score=279.80  Aligned_cols=153  Identities=15%  Similarity=0.134  Sum_probs=139.9

Q ss_pred             CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcC-CCCeEeeC
Q psy7309         293 KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTR-GGSIVTLP  366 (454)
Q Consensus       293 ~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~-~G~~~~Lr  366 (454)
                      .+.++.|++       |.++..+++|+++++++|++|||.+|.||+||++++|..+     ...+|+|.|+ +|+.++||
T Consensus         9 ~p~G~rD~l-------p~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LR   81 (392)
T PRK12421          9 LPDGVADVL-------PEEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVR   81 (392)
T ss_pred             CCCcccccC-------HHHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEEC
Confidence            466788888       7778889999999999999999999999999999998543     2479999999 79999999


Q ss_pred             CCCCHHHHHHHHHcCC-CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcE
Q psy7309         367 HDLRIPFARYLAQNGS-IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNIS  445 (454)
Q Consensus       367 ~d~T~p~aR~~a~~~~-~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~  445 (454)
                      ||+|+|+||+++++.. ..|.|+||+|+|||+++++.|++|||+|+|+|+||.+ ++.+|+|+|.++.++|+++|++++.
T Consensus        82 pD~T~~iaR~~a~~~~~~~p~R~~Y~g~VfR~~~~~~gr~rEf~Q~GvEiiG~~-~~~aDaEvi~l~~e~l~~lgi~~~~  160 (392)
T PRK12421         82 ADITPQVARIDAHLLNREGVARLCYAGSVLHTLPQGLFGSRTPLQLGAELYGHA-GIEADLEIIRLMLGLLRNAGVPALH  160 (392)
T ss_pred             CcCCHHHHHHHHhhcCCCCceEEEEeeeEEEcCCCcCCCcCccceeceEEeCCC-CchhHHHHHHHHHHHHHHcCCCCeE
Confidence            9999999999887622 5799999999999998888899999999999999988 9999999999999999999999999


Q ss_pred             EEcCcccc
Q psy7309         446 FAPHPRVL  453 (454)
Q Consensus       446 i~i~~~~~  453 (454)
                      |+|||+++
T Consensus       161 l~ig~~~i  168 (392)
T PRK12421        161 LDLGHVGI  168 (392)
T ss_pred             EEeCCHHH
Confidence            99999875

>KOG0592|consensus

Probab=99.98  E-value=4.5e-33  Score=278.34  Aligned_cols=177  Identities=31%  Similarity=0.377  Sum_probs=141.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      -++.++.||+.||+|||++|||||||||+|||++.++++||.|||.|+.+........ +           +........
T Consensus       175 caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~-~-----------~~~~~~a~s  242 (604)
T KOG0592|consen  175 CARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQE-N-----------PVDPNQASS  242 (604)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhhcccc-C-----------ccCcccccC
Confidence            4688999999999999999999999999999999999999999999997754322110 0           000001112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...++|||..|.+||++.   ....+..+  |+|+|              ||++|+|+.|.|               ||.
T Consensus       243 ~~~SFVGTAeYVSPElL~---~~~~~~~s--DiWAl--------------GCilyQmlaG~P---------------PFr  288 (604)
T KOG0592|consen  243 RRSSFVGTAEYVSPELLN---DSPAGPSS--DLWAL--------------GCILYQMLAGQP---------------PFR  288 (604)
T ss_pred             cccceeeeecccCHHHhc---CCCCCccc--chHHH--------------HHHHHHHhcCCC---------------CCc
Confidence            247799999999999999   66778888  99999              999999977654               777


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSGL  242 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~~  242 (454)
                      +.+...+++++. .-.+.||+.++             +.+.+|+     +++|..||++|+|++|+.+||||..      
T Consensus       289 a~NeyliFqkI~-~l~y~fp~~fp-------------~~a~dLv-----~KLLv~dp~~Rlt~~qIk~HpFF~~------  343 (604)
T KOG0592|consen  289 AANEYLIFQKIQ-ALDYEFPEGFP-------------EDARDLI-----KKLLVRDPSDRLTSQQIKAHPFFEG------  343 (604)
T ss_pred             cccHHHHHHHHH-HhcccCCCCCC-------------HHHHHHH-----HHHHccCccccccHHHHhhCccccc------
Confidence            777777777776 45566777743             7788999     9999999999999999999999985      


Q ss_pred             CccCcccccc
Q psy7309         243 SVLGSEQLLT  252 (454)
Q Consensus       243 ~~~~~~~ll~  252 (454)
                        ++|+++.+
T Consensus       344 --Vdw~nlw~  351 (604)
T KOG0592|consen  344 --VDWENLWQ  351 (604)
T ss_pred             --CChhhhhh
Confidence              55666544

>KOG0594|consensus

Probab=99.97  E-value=1.3e-32  Score=264.56  Aligned_cols=184  Identities=28%  Similarity=0.421  Sum_probs=143.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.+++||+.||+|||++||+||||||+|||++.+|.+||+|||+|+...                         -...
T Consensus       121 ~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~-------------------------ip~~  175 (323)
T KOG0594|consen  121 LIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARAFS-------------------------IPMR  175 (323)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHHhc-------------------------CCcc
Confidence            589999999999999999999999999999999999999999999999543                         1234


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhhc
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRRE  157 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~~  157 (454)
                      ..++.++|..|+|||++.  +...|+..+  ||||+              |||++||+.+++     ...+++..+++.+
T Consensus       176 ~yt~evvTlWYRaPEvLl--Gs~~Ys~~v--DiWs~--------------GcIfaEm~~~~~LFpG~se~~ql~~If~~l  237 (323)
T KOG0594|consen  176 TYTPEVVTLWYRAPEVLL--GSTSYSTSV--DIWSL--------------GCIFAEMFTRRPLFPGDSEIDQLFRIFRLL  237 (323)
T ss_pred             cccccEEEeeccCHHHhc--CCCcCCCCc--chHhH--------------HHHHHHHHhCCCCCCCCcHHHHHHHHHHHc
Confidence            578889999999999998  234799999  99999              999999888665     5678888888877


Q ss_pred             CCCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         158 NGPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       158 ~~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      +.|....+ ....+..+.    ..++.+.....+....++.. +...+++     .+||+++|++|.||+.+|.||||..
T Consensus       238 GtP~e~~Wp~v~~~~~~k----~~f~~~~~~~~l~~~~~~~~-~~~~dll-----~~~L~y~p~~R~Sa~~al~h~yf~~  307 (323)
T KOG0594|consen  238 GTPNEKDWPGVSSLPDYK----APFPKWPGPKDLSSILPKLD-PDGIELL-----SKLLQYDPAKRISAKGALTHPYFSE  307 (323)
T ss_pred             CCCCccCCCCcccccccc----ccCcCCCCccchHHhccccC-ccHHHHH-----HHHhccCcccCcCHHHHhcChhhcc
Confidence            77755432 222222222    13344332233333333333 6788888     9999999999999999999999997


Q ss_pred             CCC
Q psy7309         237 GSS  239 (454)
Q Consensus       237 ~~~  239 (454)
                      ...
T Consensus       308 ~~~  310 (323)
T KOG0594|consen  308 LPE  310 (323)
T ss_pred             ccc
Confidence            654

>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A

Probab=99.97  E-value=3.9e-32  Score=269.34  Aligned_cols=144  Identities=26%  Similarity=0.406  Sum_probs=130.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcC-CC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVMTRGGSIVTLPHDLRIPFARYLAQNG-SI  383 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~-~~  383 (454)
                      |.++..+++|+++++++|++|||++|.||+||+++++...    .+++|+|+|++|++++||||+|+|+||++|++. ..
T Consensus         7 ~~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a~~~~~~   86 (311)
T PF13393_consen    7 PEEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVARNLNLP   86 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHHHCCGSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHHHhcCcC
Confidence            7888899999999999999999999999999999987652    368999999999999999999999999999873 37


Q ss_pred             CceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHH-hCCCCCcEEEcCcccc
Q psy7309         384 VSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFR-RFNYGNISFAPHPRVL  453 (454)
Q Consensus       384 ~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~-~~~~~~~~i~i~~~~~  453 (454)
                      .|.|+||+|+|||++++++|++|||+||||||||.+ +..+|+|+|.++.++|+ .+|++++.|+|||+++
T Consensus        87 ~~~r~~y~g~vfR~~~~~~g~~re~~Q~g~Eiig~~-~~~~daEvi~l~~e~l~~~l~~~~~~i~i~h~~i  156 (311)
T PF13393_consen   87 RPKRYYYIGPVFRYERPGKGRPREFYQCGFEIIGSS-SLEADAEVIKLADEILDRELGLENFTIRINHTGI  156 (311)
T ss_dssp             SSEEEEEEEEEEEEETTTTTBESEEEEEEEEEESSS-SHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEHHH
T ss_pred             CCceEEEEcceeeccccCCCCCceeEEEEEEEECCC-CHHHHHHHHHHHHHHHHhhcCCCCcEEEEcCchh
Confidence            899999999999999889999999999999999999 99999999999999997 9999999999999875

...

>KOG0659|consensus

Probab=99.97  E-value=3.7e-32  Score=250.75  Aligned_cols=181  Identities=29%  Similarity=0.333  Sum_probs=140.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.+++.||+|||++.|+||||||.|+|++.+|.+||+|||+|+.+.                         +..
T Consensus       101 a~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~-------------------------~p~  155 (318)
T KOG0659|consen  101 ADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFG-------------------------SPN  155 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccC-------------------------CCC
Confidence            3689999999999999999999999999999999999999999999999764                         233


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...+..+-|..|+|||.+.  +...|+..+  ||||+              ||++.||+-+.|     ..++++..+++.
T Consensus       156 ~~~~~~V~TRWYRAPELLf--Gsr~Yg~~V--DmWav--------------GCI~AELllr~P~fpG~sDidQL~~If~~  217 (318)
T KOG0659|consen  156 RIQTHQVVTRWYRAPELLF--GSRQYGTGV--DMWAV--------------GCIFAELLLRVPFFPGDSDIDQLSKIFRA  217 (318)
T ss_pred             cccccceeeeeccChHHhc--cchhcCCcc--hhhhH--------------HHHHHHHHccCCCCCCCchHHHHHHHHHH
Confidence            4455569999999999998  357899999  99999              999999766555     688999999998


Q ss_pred             cCCCCCCchh-hhhhh---hhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         157 ENGPSTGSNV-QKSLQ---KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       157 ~~~p~~~~~~-~~~~~---~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      ++.|....+. ...+.   ++...+.+....         +.+. .++++.+|+     .+||.+||.+|+||.|+|+|+
T Consensus       218 LGTP~~~~WP~~~~lpdY~~~~~~P~~~~~~---------lf~a-as~d~ldLl-----~~m~~ynP~~Rita~qaL~~~  282 (318)
T KOG0659|consen  218 LGTPTPDQWPEMTSLPDYVKIQQFPKPPLNN---------LFPA-ASSDALDLL-----SKMLTYNPKKRITASQALKHP  282 (318)
T ss_pred             cCCCCcccCccccccccHHHHhcCCCCcccc---------cccc-ccHHHHHHH-----HhhhccCchhcccHHHHhcch
Confidence            8888765432 11111   122111111111         1112 235556666     999999999999999999999


Q ss_pred             ccccCCCC
Q psy7309         233 ISLEGSSS  240 (454)
Q Consensus       233 ~f~~~~~~  240 (454)
                      ||.....+
T Consensus       283 yf~~~P~p  290 (318)
T KOG0659|consen  283 YFKSLPLP  290 (318)
T ss_pred             hhhcCCCC
Confidence            99975543

>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit

Probab=99.97  E-value=1.3e-31  Score=265.39  Aligned_cols=144  Identities=17%  Similarity=0.245  Sum_probs=134.3

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcC--C
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVMTRGGSIVTLPHDLRIPFARYLAQNG--S  382 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~--~  382 (454)
                      |.++..+++|+++++++|++|||.+|.||+||+.+++..+    .+++|+|+|++|+.++||||+|+|+||+++++.  .
T Consensus         5 p~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~~~~   84 (314)
T TIGR00443         5 PEEAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARAVSTRLRDR   84 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHHHHHhcccC
Confidence            7788899999999999999999999999999999998643    367999999999999999999999999988752  2


Q ss_pred             CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         383 IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       383 ~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                      ..|.|+||+|+|||+++++.|++|||+|+||||||.+ +..+|+|+|.++.++|+.+|++++.|+|||+++
T Consensus        85 ~~p~r~~y~g~VfR~~~~~~gr~re~~Q~g~Eiig~~-~~~adaEvi~l~~~~l~~lg~~~~~i~l~~~~i  154 (314)
T TIGR00443        85 PLPLRLCYAGNVFRTNESGAGRSREFTQAGVELIGAG-GPAADAEVIALLIEALKALGLKDFKIELGHVGL  154 (314)
T ss_pred             CCCeEEEEeceEeecCCCcCCCcccccccceEEeCCC-CchhHHHHHHHHHHHHHHcCCCCeEEEeCcHHH
Confidence            5799999999999999999999999999999999988 899999999999999999999999999999875

Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.

>KOG0663|consensus

Probab=99.97  E-value=2.8e-32  Score=258.50  Aligned_cols=185  Identities=29%  Similarity=0.339  Sum_probs=144.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.++.|+|.||+|||++.|+||||||+|+|++..|.+||+|||+|+.+.                         +..
T Consensus       177 ~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~yg-------------------------sp~  231 (419)
T KOG0663|consen  177 GEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYG-------------------------SPL  231 (419)
T ss_pred             HHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhc-------------------------CCc
Confidence            5799999999999999999999999999999999999999999999999875                         334


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...|..+-|.+|+|||+++  +...|++.+  ||||+              |||+.|++.+.|     ..++++..++..
T Consensus       232 k~~T~lVVTLWYRaPELLL--G~~tyst~i--DMWSv--------------GCI~aE~l~~kPlf~G~sE~dQl~~If~l  293 (419)
T KOG0663|consen  232 KPYTPLVVTLWYRAPELLL--GAKTYSTAV--DMWSV--------------GCIFAELLTQKPLFPGKSEIDQLDKIFKL  293 (419)
T ss_pred             ccCcceEEEeeecCHHHhc--CCcccCcch--hhhhH--------------HHHHHHHHhcCCCCCCCchHHHHHHHHHH
Confidence            5688899999999999998  356899999  99999              999999877665     678888888888


Q ss_pred             cCCCCCCch-hhhhhhhhccCCCCCCC--ccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         157 ENGPSTGSN-VQKSLQKFQKSPPSVYR--EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~-~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      ++.|....+ ....+..+.+......|  .....|.+..     .+....+|+     ..+|.+||++|.||+|+|+|+|
T Consensus       294 lGtPte~iwpg~~~lp~~k~~~f~~~pyn~lr~kF~~~~-----lse~g~~Ll-----n~llt~dP~kR~tA~~~L~h~~  363 (419)
T KOG0663|consen  294 LGTPSEAIWPGYSELPAVKKMTFSEHPYNNLRKKFGALS-----LSEQGFDLL-----NKLLTYDPGKRITAEDGLKHEY  363 (419)
T ss_pred             hCCCccccCCCccccchhhccccCCCCchhhhhhccccc-----cchhHHHHH-----HHHhccCccccccHHHhhcccc
Confidence            888765432 22222222111111111  1111122221     347778888     9999999999999999999999


Q ss_pred             cccCCC
Q psy7309         234 SLEGSS  239 (454)
Q Consensus       234 f~~~~~  239 (454)
                      |.+.+.
T Consensus       364 F~e~P~  369 (419)
T KOG0663|consen  364 FRETPL  369 (419)
T ss_pred             cccCCC
Confidence            998554

>KOG0593|consensus

Probab=99.97  E-value=2.5e-32  Score=255.83  Aligned_cols=181  Identities=25%  Similarity=0.302  Sum_probs=132.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++++++|++.|+.|+|+++||||||||+|||++.+|.+||||||+|+.+.                         ..+
T Consensus       101 ~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~-------------------------~pg  155 (396)
T KOG0593|consen  101 ELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLS-------------------------APG  155 (396)
T ss_pred             HHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhc-------------------------CCc
Confidence            3588999999999999999999999999999999999999999999999764                         235


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...|..+.|.+|+|||.+.  +...|+..+  ||||+              ||++.||++|.|     ..+++|..+...
T Consensus       156 d~YTDYVATRWYRaPELLv--GDtqYG~pV--DiWAi--------------GCv~aEl~~G~pL~PG~SDiDQLy~I~kt  217 (396)
T KOG0593|consen  156 DNYTDYVATRWYRAPELLV--GDTQYGKPV--DIWAI--------------GCVFAELLTGEPLWPGRSDIDQLYLIRKT  217 (396)
T ss_pred             chhhhhhhhhhccChhhhc--ccCcCCCcc--cchhh--------------hHHHHHHhcCCcCCCCcchHHHHHHHHHH
Confidence            5678899999999999998  358899999  99999              999999988777     567777766654


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCC--ccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYR--EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ++.-.+.  .+.++..-..-....+|  +...  +.+.     ..+.... +.++|++.||..||.+|+|.+|+|.||||
T Consensus       218 LG~L~pr--hq~iF~~N~~F~Gv~lP~~~~~e--pLe~-----k~p~~s~-~~ld~~k~cL~~dP~~R~sc~qll~H~yF  287 (396)
T KOG0593|consen  218 LGNLIPR--HQSIFSSNPFFHGVRLPEPEHPE--PLER-----KYPKISN-VLLDLLKKCLKMDPDDRLSCEQLLHHPYF  287 (396)
T ss_pred             HcccCHH--HHHHhccCCceeeeecCCCCCcc--chhh-----hcccchH-HHHHHHHHHhcCCccccccHHHHhcChHH
Confidence            4332211  11111110000111222  2211  1111     1122222 33566699999999999999999999999


Q ss_pred             c
Q psy7309         235 L  235 (454)
Q Consensus       235 ~  235 (454)
                      .
T Consensus       288 d  288 (396)
T KOG0593|consen  288 D  288 (396)
T ss_pred             H
Confidence            4

>KOG0600|consensus

Probab=99.97  E-value=4e-32  Score=269.54  Aligned_cols=183  Identities=26%  Similarity=0.340  Sum_probs=142.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+|+.+++||++||+|||++||+|||||++|||||.+|.+||+|||||+.+..                        ...
T Consensus       218 ~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~------------------------~~~  273 (560)
T KOG0600|consen  218 PQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTP------------------------SGS  273 (560)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccC------------------------CCC
Confidence            47999999999999999999999999999999999999999999999997643                        334


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...|+.+-|.+|+|||+++  +...|+..+  |+||+              |||+.||+.|+|     ..++++..++..
T Consensus       274 ~~~T~rVvTLWYRpPELLL--G~t~Yg~aV--DlWS~--------------GCIl~El~~gkPI~~G~tEveQl~kIfkl  335 (560)
T KOG0600|consen  274 APYTSRVVTLWYRPPELLL--GATSYGTAV--DLWSV--------------GCILAELFLGKPILQGRTEVEQLHKIFKL  335 (560)
T ss_pred             cccccceEEeeccChHHhc--CCcccccce--eehhh--------------hHHHHHHHcCCCCcCCccHHHHHHHHHHH
Confidence            5588999999999999998  467899999  99999              999999999887     688889888888


Q ss_pred             cCCCCCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ++.|....+....+.-+. ..+...++..+.     ... ...++.+.+|+     ..||..||.+|.||.++|+|+||.
T Consensus       336 cGSP~e~~W~~~kLP~~~~~kp~~~y~r~l~-----E~~-~~~~~~~l~Ll-----~~lL~ldP~kR~tA~~aL~seyF~  404 (560)
T KOG0600|consen  336 CGSPTEDYWPVSKLPHATIFKPQQPYKRRLR-----ETF-KDFPASALDLL-----EKLLSLDPDKRGTASSALQSEYFT  404 (560)
T ss_pred             hCCCChhccccccCCcccccCCCCcccchHH-----HHh-ccCCHHHHHHH-----HHHhccCccccccHHHHhcCcccc
Confidence            888866653211111000 011111111110     011 22336677787     999999999999999999999995


Q ss_pred             cC
Q psy7309         236 EG  237 (454)
Q Consensus       236 ~~  237 (454)
                      +.
T Consensus       405 t~  406 (560)
T KOG0600|consen  405 TE  406 (560)
T ss_pred             cC
Confidence            43

>KOG0658|consensus

Probab=99.97  E-value=5.4e-32  Score=260.22  Aligned_cols=185  Identities=25%  Similarity=0.371  Sum_probs=145.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .|+-+.+||++||+|||+.||+||||||.|+|+|.+ |.+||||||.|+.+.                          .+
T Consensus       126 ~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~--------------------------~~  179 (364)
T KOG0658|consen  126 EIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLV--------------------------KG  179 (364)
T ss_pred             eeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeec--------------------------cC
Confidence            477899999999999999999999999999999976 789999999999763                          23


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ....+.+.|..|+|||.+.  +...|+.+.  ||||.              ||+++||+-|+|     ...+++..++..
T Consensus       180 epniSYicSRyYRaPELif--ga~~Yt~~I--DiWSa--------------GCV~aELl~g~plFpG~s~~dQL~eIik~  241 (364)
T KOG0658|consen  180 EPNISYICSRYYRAPELIF--GATEYTTSI--DIWSA--------------GCVMAELLKGQPLFPGDSSVDQLVEIIKV  241 (364)
T ss_pred             CCceeEEEeccccCHHHHc--CccccCcee--EEhhh--------------hHHHHHHhcCCcccCCCCHHHHHHHHHHH
Confidence            4456789999999999998  467899999  99999              999999877666     677888888876


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ++.|... .......+.   ....+|.... ..|..+......++..+|+     .++|.++|.+|.||.|+|.||||.+
T Consensus       242 lG~Pt~e-~I~~mn~~y---~~~~~p~ik~-~~~~~~~~~~~~~d~~dll-----~~~L~Y~P~~R~~~~~~l~h~fFde  311 (364)
T KOG0658|consen  242 LGTPTRE-DIKSMNPNY---TEFKFPQIKA-HPWHKVFFKRLPPDALDLL-----SKLLQYSPSKRLSALEALAHPFFDE  311 (364)
T ss_pred             hCCCCHH-HHhhcCccc---ccccCccccc-ccceeecccCCCHHHHHHH-----HHHhccChhhcCCHHHHhcchhhHH
Confidence            6666433 111111111   1222333222 3466655566668888999     9999999999999999999999998


Q ss_pred             CCCCC
Q psy7309         237 GSSSG  241 (454)
Q Consensus       237 ~~~~~  241 (454)
                      -..+.
T Consensus       312 lr~~~  316 (364)
T KOG0658|consen  312 LRDPN  316 (364)
T ss_pred             hhCcC
Confidence            77663

>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=99.97  E-value=3.6e-31  Score=266.27  Aligned_cols=137  Identities=14%  Similarity=0.201  Sum_probs=125.0

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceee
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKR  388 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~  388 (454)
                      ..++|.++|+++|++|||.+|+||+||+++++..+     .+++|+|.|++|+.++||||+|+|+||+++.++...|.|+
T Consensus         6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~   85 (373)
T PRK12295          6 ASAAAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARY   85 (373)
T ss_pred             hHHHHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEE
Confidence            46789999999999999999999999999998643     2469999999999999999999999999887533789999


Q ss_pred             EeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         389 YCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       389 ~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                      ||+|+|||++   +|++|||+|+||||||..+++.+|+|+|.++.++|+.+|++++.|+|||+++
T Consensus        86 ~Y~g~VfR~~---~gr~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~lgl~~~~i~ig~~~i  147 (373)
T PRK12295         86 AYLGEVFRQR---RDRASEFLQAGIESFGRADPAAADAEVLALALEALAALGPGDLEVRLGDVGL  147 (373)
T ss_pred             EEEccEEECC---CCCCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHcCCCceEEEeCCHHH
Confidence            9999999987   7899999999999999753678999999999999999999999999999975

>KOG0033|consensus

Probab=99.97  E-value=7.2e-32  Score=246.05  Aligned_cols=161  Identities=28%  Similarity=0.443  Sum_probs=130.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .+-++++|||+||.|+|.+||||||+||+|+|+....   -+||+|||+|..+.                          
T Consensus       111 ~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~--------------------------  164 (355)
T KOG0033|consen  111 DASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVN--------------------------  164 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeC--------------------------
Confidence            3678999999999999999999999999999996543   48999999998663                          


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .+..-.+.+|||.|||||++.   ..+|+..+  |||+.              |+++|-++.|.+               
T Consensus       165 ~g~~~~G~~GtP~fmaPEvvr---kdpy~kpv--DiW~c--------------GViLfiLL~G~~---------------  210 (355)
T KOG0033|consen  165 DGEAWHGFAGTPGYLSPEVLK---KDPYSKPV--DIWAC--------------GVILYILLVGYP---------------  210 (355)
T ss_pred             CccccccccCCCcccCHHHhh---cCCCCCcc--hhhhh--------------hHHHHHHHhCCC---------------
Confidence            234556789999999999998   78999999  99999              999998776654               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ||.+.......+++. .....+|..    .|++     .++++++|+     ++||..||++|+||.|+|+|||..+..
T Consensus       211 PF~~~~~~rlye~I~-~g~yd~~~~----~w~~-----is~~Ak~Lv-----rrML~~dP~kRIta~EAL~HpWi~~r~  274 (355)
T KOG0033|consen  211 PFWDEDQHRLYEQIK-AGAYDYPSP----EWDT-----VTPEAKSLI-----RRMLTVNPKKRITADEALKHPWICNRE  274 (355)
T ss_pred             CCCCccHHHHHHHHh-ccccCCCCc----ccCc-----CCHHHHHHH-----HHHhccChhhhccHHHHhCCchhcchH
Confidence            555555555555555 344445442    3554     348888999     999999999999999999999998543

>KOG0599|consensus

Probab=99.97  E-value=1.5e-31  Score=247.36  Aligned_cols=163  Identities=26%  Similarity=0.415  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +.++|++|+++|+.|||..+|+||||||+|||++++.++||+|||+|+.+                          ..+.
T Consensus       124 ~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l--------------------------~~Ge  177 (411)
T KOG0599|consen  124 ETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQL--------------------------EPGE  177 (411)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeecc--------------------------CCch
Confidence            67899999999999999999999999999999999999999999999976                          3356


Q ss_pred             CCcCcccccceeccccccc---cccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          83 SHTGQVGTALYAAPELDSH---GVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~---~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ..+..||||.|+|||.+..   ....+|+..+  |+||+              |+|+|.++.|-|+....-.-.+.    
T Consensus       178 kLrelCGTPgYLAPEtikC~m~e~~pGYs~EV--D~Wa~--------------GVImyTLLaGcpPFwHRkQmlML----  237 (411)
T KOG0599|consen  178 KLRELCGTPGYLAPETIKCSMYENHPGYSKEV--DEWAC--------------GVIMYTLLAGCPPFWHRKQMLML----  237 (411)
T ss_pred             hHHHhcCCCcccChhheeeecccCCCCccchh--hHHHH--------------HHHHHHHHcCCCchhHHHHHHHH----
Confidence            7788999999999999852   2356788889  99999              99999977766643322110110    


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                                  +....+...|...    .|.+     .+...++||     .+||+.||.+|.|++|+|.||||...
T Consensus       238 ------------R~ImeGkyqF~sp----eWad-----is~~~KdLI-----srlLqVdp~~Ritake~LaHpff~q~  289 (411)
T KOG0599|consen  238 ------------RMIMEGKYQFRSP----EWAD-----ISATVKDLI-----SRLLQVDPTKRITAKEALAHPFFIQI  289 (411)
T ss_pred             ------------HHHHhcccccCCc----chhh-----ccccHHHHH-----HHHHeeCchhcccHHHHhcChHHHHH
Confidence                        1111344444332    3543     347888999     99999999999999999999999743

>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=99.97  E-value=2.1e-30  Score=251.42  Aligned_cols=143  Identities=11%  Similarity=0.126  Sum_probs=127.7

Q ss_pred             CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc-cccccEEEEcCCCCeEeeCCCCCH
Q psy7309         293 KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA-TSETTASVMTRGGSIVTLPHDLRI  371 (454)
Q Consensus       293 ~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~-~~~~~~~~~d~~G~~~~Lr~d~T~  371 (454)
                      .+.++.|++       |.++..+++|+++++++|++|||.+|.||+||+++++.. ..+++|+|.|++|+.++||||+|+
T Consensus         7 ~p~G~rD~l-------p~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~   79 (281)
T PRK12293          7 IPQGSKLYF-------GKSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTL   79 (281)
T ss_pred             CCCcccccC-------cHHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCH
Confidence            455677777       788889999999999999999999999999999999854 347899999999999999999999


Q ss_pred             HHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEcC
Q psy7309         372 PFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPH  449 (454)
Q Consensus       372 p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i~  449 (454)
                      |+||++|.+..  ..|.|+||+|+|||+++      |||+|+|+|+||.+ ++   +|+|.+|+++|+++|++ +.|+||
T Consensus        80 ~iaR~~a~~~~~~~~p~r~~Y~g~vfR~~~------rEf~Q~GvEliG~~-~~---~Evi~la~~~l~~lgl~-~~i~ig  148 (281)
T PRK12293         80 DVVRIVTKRLGRSTEHKKWFYIQPVFRYPS------NEIYQIGAELIGEE-DL---SEILNIAAEIFEELELE-PILQIS  148 (281)
T ss_pred             HHHHHHHHhcccCCCceeEEEeccEEecCC------CcccccCeEeeCCC-CH---HHHHHHHHHHHHHcCCC-CEEEEC
Confidence            99999987532  56999999999999852      89999999999998 54   69999999999999996 589999


Q ss_pred             cccc
Q psy7309         450 PRVL  453 (454)
Q Consensus       450 ~~~~  453 (454)
                      |+++
T Consensus       149 ~~~i  152 (281)
T PRK12293        149 NIKI  152 (281)
T ss_pred             CHHH
Confidence            9985

>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain

Probab=99.97  E-value=4.6e-30  Score=248.10  Aligned_cols=141  Identities=23%  Similarity=0.297  Sum_probs=131.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC--CC
Q psy7309         312 FSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS--IV  384 (454)
Q Consensus       312 ~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~--~~  384 (454)
                      +.++++|++.++++|++|||.+|.||+||+.+++..+     .+++|+|+|++|+.++||||+|+|+||+++++..  ..
T Consensus         2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~   81 (261)
T cd00773           2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPL   81 (261)
T ss_pred             hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence            4578999999999999999999999999999998543     3679999999999999999999999999998753  48


Q ss_pred             ceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         385 SMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       385 ~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                      |.|+||+|+|||+++++.|++|||+|+|+||+|.+ +..+|+|+|.++.++|+.+|++++.|+|||+++
T Consensus        82 p~k~~y~g~vfR~e~~~~g~~re~~Q~g~Eiig~~-~~~~daE~i~l~~~~l~~lg~~~~~i~l~~~~i  149 (261)
T cd00773          82 PLKLYYIGPVFRYERPQKGRYREFYQVGVEIIGSD-SPLADAEVIALAVEILEALGLKDFQIKINHRGI  149 (261)
T ss_pred             CeEEEEEcCEEecCCCCCCCccceEEeceeeeCCC-ChHHHHHHHHHHHHHHHHcCCCceEEEECCHHH
Confidence            99999999999999888999999999999999997 899999999999999999999999999999975

HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.

>KOG0616|consensus

Probab=99.97  E-value=2.4e-31  Score=248.63  Aligned_cols=167  Identities=30%  Similarity=0.373  Sum_probs=143.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||++||+|||+++|++|||||||||+|.+|++||.|||.|+...                            .
T Consensus       145 ~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~----------------------------~  196 (355)
T KOG0616|consen  145 HARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVS----------------------------G  196 (355)
T ss_pred             hHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEec----------------------------C
Confidence            578999999999999999999999999999999999999999999998652                            2


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...+.||||.|+|||+++   ..+|+.++  |.|||              |+++|||+.|.+               ||.
T Consensus       197 rT~TlCGTPeYLAPEii~---sk~ynkav--DWWal--------------GVLIYEMlaG~p---------------PF~  242 (355)
T KOG0616|consen  197 RTWTLCGTPEYLAPEIIQ---SKGYNKAV--DWWAL--------------GVLIYEMLAGYP---------------PFY  242 (355)
T ss_pred             cEEEecCCccccChHHhh---cCCCCcch--hHHHH--------------HHHHHHHHcCCC---------------CCc
Confidence            356789999999999999   78999999  99999              999999877654               666


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCC-----CChhhhhcCcccccC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKR-----PSSEQNLCQPISLEG  237 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~R-----pta~e~l~hp~f~~~  237 (454)
                      +.+...+..++. .....+|..++             +++++||     +++|+.|-.+|     ....++..||||.. 
T Consensus       243 ~~~~~~iY~KI~-~~~v~fP~~fs-------------~~~kdLl-----~~LL~vD~t~R~gnlknG~~dIk~H~wF~~-  302 (355)
T KOG0616|consen  243 DDNPIQIYEKIL-EGKVKFPSYFS-------------SDAKDLL-----KKLLQVDLTKRFGNLKNGVEDIKNHPWFKG-  302 (355)
T ss_pred             CCChHHHHHHHH-hCcccCCcccC-------------HHHHHHH-----HHHHhhhhHhhhcCcCCCccccccCccccc-
Confidence            666666667766 56778888753             8889999     99999999999     35789999999984 


Q ss_pred             CCCCCCccCccccccCCCCCC
Q psy7309         238 SSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       238 ~~~~~~~~~~~~ll~~~~~~~  258 (454)
                             ++|+++++...-+|
T Consensus       303 -------v~W~~i~~r~ie~P  316 (355)
T KOG0616|consen  303 -------VDWEAILQRKIEPP  316 (355)
T ss_pred             -------ccHHHHhhccccCC
Confidence                   67888887766555

>KOG0667|consensus

Probab=99.97  E-value=6.1e-31  Score=269.40  Aligned_cols=185  Identities=23%  Similarity=0.296  Sum_probs=134.6

Q ss_pred             ChhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC--CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           1 MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         1 ~~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~--~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      +..++.+++|||.||.+||+.||||+||||||||+...+  .|||+|||+|+...                         
T Consensus       288 l~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~-------------------------  342 (586)
T KOG0667|consen  288 LPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFES-------------------------  342 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccC-------------------------
Confidence            357899999999999999999999999999999998765  69999999998642                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHH
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHN  153 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~  153 (454)
                         ......+.+..|+|||+++   +.+|+.+.  |||||              |||++||++|.|     ...+++..+
T Consensus       343 ---q~vytYiQSRfYRAPEVIL---GlpY~~~I--DmWSL--------------GCIlAEL~tG~PLfpG~ne~DQl~~I  400 (586)
T KOG0667|consen  343 ---QRVYTYIQSRFYRAPEVIL---GLPYDTAI--DMWSL--------------GCILAELFTGEPLFPGDNEYDQLARI  400 (586)
T ss_pred             ---Ccceeeeeccccccchhhc---cCCCCCcc--ceeeh--------------hhhHHhHhcCccccCCCCHHHHHHHH
Confidence               2233789999999999999   89999999  99999              999999998877     677888877


Q ss_pred             hhhcCCCCCCch--hhhhhhhhcc-----------------------------CCCCCCCccccccccccccccccccch
Q psy7309         154 IRRENGPSTGSN--VQKSLQKFQK-----------------------------SPPSVYREWRSSFEWSTVRNNIKSNFQ  202 (454)
Q Consensus       154 i~~~~~p~~~~~--~~~~~~~~~~-----------------------------~~~~~~p~~~~~~~~~~~~~~~~~~~~  202 (454)
                      +..++.|+...-  ..+..+-+..                             ......|...  -.|....     ...
T Consensus       401 ~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~--~~l~~~~-----~~~  473 (586)
T KOG0667|consen  401 IEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCVETSAPRGTKSPEVRKYYRKARLERRGPPGS--RSLESGL-----PKA  473 (586)
T ss_pred             HHHhCCCCHHHHHhccccceehhccCCceeeeeeecccccccchhhhhhhhhhcccccCCCCC--cccchhc-----ccc
Confidence            776666653210  0000000100                             0001111110  1122222     112


Q ss_pred             hHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         203 HFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       203 ~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      .+..|++|+++||++||.+|+|+.|+|+|||+.....
T Consensus       474 ~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~~~  510 (586)
T KOG0667|consen  474 DDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGTSL  510 (586)
T ss_pred             cHHHHHHHHHHHhccCchhcCCHHHHhcCcccccccc
Confidence            3444456669999999999999999999999995443

>KOG0578|consensus

Probab=99.97  E-value=7.4e-31  Score=264.31  Aligned_cols=160  Identities=27%  Similarity=0.441  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ++..+++++|.||+|||.+||||||||.+|||++.+|.+||+|||++.++..                         ...
T Consensus       370 qIA~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~-------------------------~~~  424 (550)
T KOG0578|consen  370 QIAAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISE-------------------------EQS  424 (550)
T ss_pred             HHHHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeecccc-------------------------ccC
Confidence            6788999999999999999999999999999999999999999999987742                         233


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...+.+|||+|||||++.   ...|+.++  |||||              |+++.||..|.|               |+.
T Consensus       425 KR~TmVGTPYWMAPEVvt---rk~YG~KV--DIWSL--------------GIMaIEMveGEP---------------PYl  470 (550)
T KOG0578|consen  425 KRSTMVGTPYWMAPEVVT---RKPYGPKV--DIWSL--------------GIMAIEMVEGEP---------------PYL  470 (550)
T ss_pred             ccccccCCCCccchhhhh---hcccCccc--cchhh--------------hhHHHHHhcCCC---------------Ccc
Confidence            677889999999999999   78999999  99999              999999987766               333


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      ..+.-..+..+...+.+.+...           ...++..++|+     .+||+.||.+|+||.|+|+||||...
T Consensus       471 nE~PlrAlyLIa~ng~P~lk~~-----------~klS~~~kdFL-----~~cL~~dv~~RasA~eLL~HpFl~~a  529 (550)
T KOG0578|consen  471 NENPLRALYLIATNGTPKLKNP-----------EKLSPELKDFL-----DRCLVVDVEQRASAKELLEHPFLKMA  529 (550)
T ss_pred             CCChHHHHHHHhhcCCCCcCCc-----------cccCHHHHHHH-----HHHhhcchhcCCCHHHHhcChhhhhc
Confidence            3333334444444555554433           33458899999     99999999999999999999999643

>KOG0198|consensus

Probab=99.96  E-value=3.1e-30  Score=251.51  Aligned_cols=165  Identities=30%  Similarity=0.426  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      +.|+++.+||++||+|||++|||||||||+|||++. ++.+||+|||+++......                      ..
T Consensus       117 ~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~----------------------~~  174 (313)
T KOG0198|consen  117 PLVRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKG----------------------TK  174 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCcccccccccc----------------------cc
Confidence            468999999999999999999999999999999999 7999999999998653100                      12


Q ss_pred             CCCCcCcccccceeccccccccccccccc--cCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQ--FTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~--~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      ........||+.|||||++..    .+..  .+  ||||+              ||++.||++|.++..+..        
T Consensus       175 ~~~~~~~~Gtp~~maPEvi~~----g~~~~~~s--DiWSl--------------GCtVvEM~Tg~~PW~~~~--------  226 (313)
T KOG0198|consen  175 SDSELSVQGTPNYMAPEVIRN----GEVARRES--DIWSL--------------GCTVVEMLTGKPPWSEFF--------  226 (313)
T ss_pred             ccccccccCCccccCchhhcC----CCcCCccc--hhhhc--------------CCEEEeccCCCCcchhhc--------
Confidence            234556899999999999982    2223  55  99999              999999999866443310        


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                           ......+........+.+|..             .++.+.+||     ..|+..||++||||+++|.|||.....
T Consensus       227 -----~~~~~~~~ig~~~~~P~ip~~-------------ls~~a~~Fl-----~~C~~~~p~~Rpta~eLL~hpf~~~~~  283 (313)
T KOG0198|consen  227 -----EEAEALLLIGREDSLPEIPDS-------------LSDEAKDFL-----RKCFKRDPEKRPTAEELLEHPFLKQNS  283 (313)
T ss_pred             -----chHHHHHHHhccCCCCCCCcc-------------cCHHHHHHH-----HHHhhcCcccCcCHHHHhhChhhhccc
Confidence                 001111111111222344444             338888999     999999999999999999999998755


Q ss_pred             C
Q psy7309         239 S  239 (454)
Q Consensus       239 ~  239 (454)
                      .
T Consensus       284 ~  284 (313)
T KOG0198|consen  284 I  284 (313)
T ss_pred             c
Confidence            4

>KOG0588|consensus

Probab=99.96  E-value=1.6e-30  Score=265.10  Aligned_cols=161  Identities=29%  Similarity=0.384  Sum_probs=140.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ++.++|+||++|+.|+|..+|+||||||+|+|++.++++||+|||.|...                          ..+.
T Consensus       113 eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe--------------------------~~gk  166 (786)
T KOG0588|consen  113 EAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLE--------------------------VPGK  166 (786)
T ss_pred             HHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecc--------------------------cCCc
Confidence            68899999999999999999999999999999999999999999999743                          2345


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...+.||+|+|.|||++.   +.+|+... +||||.              |+|+|-|++|+.               ||.
T Consensus       167 lLeTSCGSPHYA~PEIV~---G~pYdG~~-sDVWSC--------------GVILfALLtG~L---------------PFd  213 (786)
T KOG0588|consen  167 LLETSCGSPHYAAPEIVS---GRPYDGRP-SDVWSC--------------GVILFALLTGKL---------------PFD  213 (786)
T ss_pred             cccccCCCcccCCchhhc---CCCCCCCc-cccchh--------------HHHHHHHHhCCC---------------CCC
Confidence            667789999999999999   77886543 599999              999999888763               888


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSG  241 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~  241 (454)
                      +.+.+..+.+++ .+.+.+|...             ++++.+||     ++||..||.+|+|.+|+++|||+....+..
T Consensus       214 DdNir~LLlKV~-~G~f~MPs~I-------------s~eaQdLL-----r~ml~VDp~~RiT~~eI~kHP~l~g~~~~~  273 (786)
T KOG0588|consen  214 DDNIRVLLLKVQ-RGVFEMPSNI-------------SSEAQDLL-----RRMLDVDPSTRITTEEILKHPFLSGYTSLP  273 (786)
T ss_pred             CccHHHHHHHHH-cCcccCCCcC-------------CHHHHHHH-----HHHhccCccccccHHHHhhCchhhcCCCCC
Confidence            888888888888 4566677653             38899999     999999999999999999999999877643

>KOG0583|consensus

Probab=99.96  E-value=1.6e-30  Score=262.21  Aligned_cols=158  Identities=30%  Similarity=0.383  Sum_probs=130.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ++++++|+|+++|++|||++||+||||||+|||++.+ +++||+|||++....                         ..
T Consensus       120 ~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~-------------------------~~  174 (370)
T KOG0583|consen  120 DEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISP-------------------------GE  174 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccC-------------------------CC
Confidence            3689999999999999999999999999999999999 999999999998542                         12


Q ss_pred             CCCCcCcccccceecccccccccccc-cc-ccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAM-YN-QFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~-~~-~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      .......+||+.|+|||++.   +.. |+ .++  ||||+              |+++|.|+.|+.              
T Consensus       175 ~~~l~t~cGsp~Y~aPEvl~---~~~~Y~g~~a--DvWS~--------------GViLy~ml~G~~--------------  221 (370)
T KOG0583|consen  175 DGLLKTFCGSPAYAAPEVLS---GKGTYSGKAA--DVWSL--------------GVILYVLLCGRL--------------  221 (370)
T ss_pred             CCcccCCCCCcccCCHHHhC---CCCCcCCchh--hhhhh--------------HHHHHHHHhCCC--------------
Confidence            45677789999999999998   444 76 445  99999              888888766543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       ||.+.+......++. .....+|.++.            ++++.+|+     .+||..||.+|+|+.+++.||||+.
T Consensus       222 -PF~d~~~~~l~~ki~-~~~~~~p~~~~------------S~~~~~Li-----~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  222 -PFDDSNVPNLYRKIR-KGEFKIPSYLL------------SPEARSLI-----EKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             -CCCCccHHHHHHHHh-cCCccCCCCcC------------CHHHHHHH-----HHHcCCCcccCCCHHHHhhChhhcc
Confidence             555555555555543 56677787741            37888999     9999999999999999999999997

>TIGR00442 hisS histidyl-tRNA synthetase

Probab=99.96  E-value=1.8e-29  Score=258.47  Aligned_cols=152  Identities=15%  Similarity=0.225  Sum_probs=138.4

Q ss_pred             CCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCCCCeEee
Q psy7309         294 VSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRGGSIVTL  365 (454)
Q Consensus       294 ~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~G~~~~L  365 (454)
                      +.++.|+.       |.++..+++|++.++++|++|||.+|.||+||+++++..+        .+++|+|.|++|+.++|
T Consensus         3 p~G~~d~~-------p~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~L   75 (397)
T TIGR00442         3 PRGTRDFL-------PEEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTL   75 (397)
T ss_pred             CCCcCCCC-------HHHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEee
Confidence            44555655       8888899999999999999999999999999999988542        15799999999999999


Q ss_pred             CCCCCHHHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCC
Q psy7309         366 PHDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGN  443 (454)
Q Consensus       366 r~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~  443 (454)
                      |||+|+|+||++|++..  ..|.|+||+|+|||+++++.|++|||+|+|+||+|.+ +..+|+|+|.++.++|+.+|+++
T Consensus        76 RpD~T~~iaR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~ref~Q~g~eiig~~-~~~~d~E~i~l~~e~l~~lg~~~  154 (397)
T TIGR00442        76 RPEGTAPVARAVIENKLLLPKPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD-SPLADAEIIALAAEILKELGIKD  154 (397)
T ss_pred             cCCCcHHHHHHHHhcccccCCCeEEEEEcCeecCCCCCCCcccceEEcCeeeeCCC-CHHHHHHHHHHHHHHHHHcCCCc
Confidence            99999999999997642  4699999999999999889999999999999999998 88899999999999999999999


Q ss_pred             cEEEcCcccc
Q psy7309         444 ISFAPHPRVL  453 (454)
Q Consensus       444 ~~i~i~~~~~  453 (454)
                      +.|+|||+++
T Consensus       155 ~~i~i~~~~i  164 (397)
T TIGR00442       155 FTLEINSLGI  164 (397)
T ss_pred             eEEEecCccc
Confidence            9999999986

This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff.

>KOG0694|consensus

Probab=99.96  E-value=2.4e-30  Score=265.43  Aligned_cols=172  Identities=28%  Similarity=0.422  Sum_probs=146.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.+|+.||+|||++|||+||||.+|||+|..|++||+|||+++...                         ..+
T Consensus       468 ~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m-------------------------~~g  522 (694)
T KOG0694|consen  468 PRARFYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGM-------------------------GQG  522 (694)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccC-------------------------CCC
Confidence            3688999999999999999999999999999999999999999999998532                         234


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....++||||.|||||++.   +..|+..+  |.|||              |+++|||+.|.               .||
T Consensus       523 ~~TsTfCGTpey~aPEil~---e~~Yt~aV--DWW~l--------------GVLlyeML~Gq---------------~PF  568 (694)
T KOG0694|consen  523 DRTSTFCGTPEFLAPEVLT---EQSYTRAV--DWWGL--------------GVLLYEMLVGE---------------SPF  568 (694)
T ss_pred             CccccccCChhhcChhhhc---cCcccchh--hHHHH--------------HHHHHHHHcCC---------------CCC
Confidence            4667899999999999999   89999999  99999              99999987654               366


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~  236 (454)
                      .+.+-.+.+..+. ...+.+|.+++             .++.+++     +++|.+||++|..+     +++.+||||..
T Consensus       569 ~gddEee~FdsI~-~d~~~yP~~ls-------------~ea~~il-----~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~  629 (694)
T KOG0694|consen  569 PGDDEEEVFDSIV-NDEVRYPRFLS-------------KEAIAIM-----RRLLRKNPEKRLGSGERDAEDIKKHPFFRS  629 (694)
T ss_pred             CCCCHHHHHHHHh-cCCCCCCCccc-------------HHHHHHH-----HHHhccCcccccCCCCCCchhhhhCCcccc
Confidence            6666666666665 56677888864             6777888     99999999999975     78999999985


Q ss_pred             CCCCCCCccCccccccCCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPPP  259 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~~  259 (454)
                              ++|++|++...-||.
T Consensus       630 --------i~w~~L~~r~i~PPf  644 (694)
T KOG0694|consen  630 --------IDWDDLLNRRIKPPF  644 (694)
T ss_pred             --------CCHHHHhhccCCCCC
Confidence                    778899988877764

>KOG0591|consensus

Probab=99.96  E-value=7.7e-31  Score=243.64  Aligned_cols=147  Identities=31%  Similarity=0.495  Sum_probs=127.7

Q ss_pred             hHHHHHHHHHHHHHHHHH--cC--CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHS--QG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~--~g--iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .||+++.|++.||.++|.  .+  |+||||||.||+++.+|.|||+|||+++.+.                         
T Consensus       125 ~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~-------------------------  179 (375)
T KOG0591|consen  125 TVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLS-------------------------  179 (375)
T ss_pred             HHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhc-------------------------
Confidence            589999999999999998  44  9999999999999999999999999999774                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      +......+.+|||+||+||.+.   ..+|+.++  ||||+              ||++|||+               .+.
T Consensus       180 s~~tfA~S~VGTPyYMSPE~i~---~~~Y~~kS--DiWsl--------------GCllyEMc---------------aL~  225 (375)
T KOG0591|consen  180 SKTTFAHSLVGTPYYMSPERIH---ESGYNFKS--DIWSL--------------GCLLYEMC---------------ALQ  225 (375)
T ss_pred             chhHHHHhhcCCCcccCHHHHh---cCCCCcch--hHHHH--------------HHHHHHHH---------------hcC
Confidence            3345667799999999999999   88999999  99999              99999974               355


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS  225 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta  225 (454)
                      +||.+.+......++.++..+++|...            .+..+..+|     ..|+..||..||+.
T Consensus       226 ~PF~g~n~~~L~~KI~qgd~~~~p~~~------------YS~~l~~li-----~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  226 SPFYGDNLLSLCKKIEQGDYPPLPDEH------------YSTDLRELI-----NMCIAVDPEQRPDT  275 (375)
T ss_pred             CCcccccHHHHHHHHHcCCCCCCcHHH------------hhhHHHHHH-----HHHccCCcccCCCc
Confidence            788888888999999988776666432            236677788     99999999999986

>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism]

Probab=99.96  E-value=1.1e-29  Score=251.52  Aligned_cols=153  Identities=16%  Similarity=0.202  Sum_probs=139.1

Q ss_pred             CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcCCCCeEeeCC
Q psy7309         293 KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTRGGSIVTLPH  367 (454)
Q Consensus       293 ~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~~G~~~~Lr~  367 (454)
                      .+.++.|.+       |.+.+.++.|++++.+.|.+|||..|+||+|||+|++...     .+++|++.|+.|+.+||||
T Consensus         5 lp~g~rd~L-------p~e~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRp   77 (390)
T COG3705           5 LPEGIRDVL-------PLEARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRP   77 (390)
T ss_pred             CCCcchhcc-------hhHHhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecc
Confidence            344566666       8888899999999999999999999999999999998764     3689999999999999999


Q ss_pred             CCCHHHHHHHHHcCCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEE
Q psy7309         368 DLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       368 d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~  447 (454)
                      |+|+|+||.++......|.|++|.|+|||..+...|+..||+|+|||++|.+ +..||+|+|.+|..+|+.+|+.+++|.
T Consensus        78 D~T~pVaR~~~~~~~~~P~Rl~Y~G~Vfr~~~~~~g~~~Ef~QaGiEllG~~-~~~ADaEvi~la~~~L~~~gl~~~~l~  156 (390)
T COG3705          78 DFTIPVARIHATLLAGTPLRLSYAGKVFRAREGRHGRRAEFLQAGIELLGDD-SAAADAEVIALALAALKALGLADLKLE  156 (390)
T ss_pred             cccHHHHHHHHHhcCCCCceeeecchhhhcchhccCcccchhhhhhHHhCCC-cchhhHHHHHHHHHHHHHcCCcCeEEE
Confidence            9999999998876545899999999999987556788889999999999997 999999999999999999999999999


Q ss_pred             cCcccc
Q psy7309         448 PHPRVL  453 (454)
Q Consensus       448 i~~~~~  453 (454)
                      +||.++
T Consensus       157 LG~~gi  162 (390)
T COG3705         157 LGHAGI  162 (390)
T ss_pred             eccHHH
Confidence            999875

>KOG0671|consensus

Probab=99.96  E-value=2.1e-29  Score=242.90  Aligned_cols=187  Identities=24%  Similarity=0.310  Sum_probs=134.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC--------------------CCeEEecccchhhhhhhcCCCc
Q psy7309           1 MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE--------------------DHVKIGDFGLATNILQKHAGPL   60 (454)
Q Consensus         1 ~~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~--------------------~~vKL~DFGla~~~~~~~~~~~   60 (454)
                      ++.|+.+.+|+++++++||+.+++|.||||+|||+...                    ..|||+|||.|+..        
T Consensus       191 i~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~--------  262 (415)
T KOG0671|consen  191 IDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFD--------  262 (415)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCccee--------
Confidence            46799999999999999999999999999999998532                    25899999999853        


Q ss_pred             cccccCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeec
Q psy7309          61 ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVY  140 (454)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~  140 (454)
                                          ...+...+.|.+|+|||+++   +-+|++.+  ||||+              |||++|++
T Consensus       263 --------------------~e~hs~iVsTRHYRAPEViL---gLGwS~pC--DvWSi--------------GCIL~Ely  303 (415)
T KOG0671|consen  263 --------------------HEHHSTIVSTRHYRAPEVIL---GLGWSQPC--DVWSI--------------GCILVELY  303 (415)
T ss_pred             --------------------ccCcceeeeccccCCchhee---ccCcCCcc--Cceee--------------eeEEEEee
Confidence                                23457789999999999999   89999999  99999              99999998


Q ss_pred             CCch-----hhHHHHHHHhhhcCCCCCCchhhhh-hhhhccCCCCCCCcccccc----ccccccc-----cccccchhHH
Q psy7309         141 KDRP-----KTLEELKHNIRRENGPSTGSNVQKS-LQKFQKSPPSVYREWRSSF----EWSTVRN-----NIKSNFQHFL  205 (454)
Q Consensus       141 ~~~~-----~~~~~l~~~i~~~~~p~~~~~~~~~-~~~~~~~~~~~~p~~~~~~----~~~~~~~-----~~~~~~~~~l  205 (454)
                      +|..     ...+.| ..+....+|++..-..+. ..++...+...+|+....-    .|+...+     ...+.+... 
T Consensus       304 tG~~LFqtHen~EHL-aMMerIlGp~P~~mi~r~~~~Kyf~~~rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~-  381 (415)
T KOG0671|consen  304 TGETLFQTHENLEHL-AMMERILGPIPSRMIKKTRKEKYFRRGRLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQ-  381 (415)
T ss_pred             ccceecccCCcHHHH-HHHHHhhCCCcHHHhhhhhhHhhhhcccccCccccccccchhhhcCCccHHHHhccCcHHHhH-
Confidence            8665     233444 444555567766554444 3443333344444332110    1111000     111222222 


Q ss_pred             HHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         206 ILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       206 i~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |++++++||..||.+|+|+.|||.||||...
T Consensus       382 -LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~  412 (415)
T KOG0671|consen  382 -LFDLLRRMLEFDPARRITLREALSHPFFARL  412 (415)
T ss_pred             -HHHHHHHHHccCccccccHHHHhcCHHhhcC
Confidence             2366699999999999999999999999854

>KOG0605|consensus

Probab=99.96  E-value=1.1e-29  Score=254.14  Aligned_cols=194  Identities=26%  Similarity=0.283  Sum_probs=141.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccc------cccCccCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR------ELTGYILPPIDST   75 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~------~~~~~~~~~~~~~   75 (454)
                      +.++.++.+++.|++-||+.|+|||||||+|+|||..|++||+||||++.+...+......      .......+.....
T Consensus       241 ~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (550)
T KOG0605|consen  241 DWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFPK  320 (550)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCccccc
Confidence            4689999999999999999999999999999999999999999999997654322211000      0000000000000


Q ss_pred             -----C-----------cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeee
Q psy7309          76 -----A-----------FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEV  139 (454)
Q Consensus        76 -----~-----------~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el  139 (454)
                           .           .........+.+|||-|||||++.   +.+|+..+  |+|||              |||+|||
T Consensus       321 ~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll---~kgY~~~c--DwWSL--------------G~ImyEm  381 (550)
T KOG0605|consen  321 FNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLL---GKGYGKEC--DWWSL--------------GCIMYEM  381 (550)
T ss_pred             cccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHh---cCCCCccc--cHHHH--------------HHHHHHH
Confidence                 0           000112233579999999999999   78899999  99999              9999998


Q ss_pred             cCCchhhHHHHHHHhhhcCCCCCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCC
Q psy7309         140 YKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHD  218 (454)
Q Consensus       140 ~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~d  218 (454)
                      +.|-               +||.+.+..+++.++.+ .....+|...           ..++++.+||     .+||. |
T Consensus       382 LvGy---------------PPF~s~tp~~T~rkI~nwr~~l~fP~~~-----------~~s~eA~DLI-----~rll~-d  429 (550)
T KOG0605|consen  382 LVGY---------------PPFCSETPQETYRKIVNWRETLKFPEEV-----------DLSDEAKDLI-----TRLLC-D  429 (550)
T ss_pred             HhCC---------------CCCCCCCHHHHHHHHHHHhhhccCCCcC-----------cccHHHHHHH-----HHHhc-C
Confidence            6654               47888777777776653 2334556552           2348899999     99999 9


Q ss_pred             CCCCCC---hhhhhcCcccccCCCCCCCccCccccccCC
Q psy7309         219 PSKRPS---SEQNLCQPISLEGSSSGLSVLGSEQLLTCD  254 (454)
Q Consensus       219 P~~Rpt---a~e~l~hp~f~~~~~~~~~~~~~~~ll~~~  254 (454)
                      |.+|..   ++|+.+||||..        ++|+.+.+.+
T Consensus       430 ~~~RLG~~G~~EIK~HPfF~~--------v~W~~l~~~~  460 (550)
T KOG0605|consen  430 PENRLGSKGAEEIKKHPFFKG--------VDWDHLREMP  460 (550)
T ss_pred             HHHhcCcccHHHHhcCCcccc--------CCcchhhcCC
Confidence            999986   899999999985        5677776554

>KOG0582|consensus

Probab=99.96  E-value=1.5e-29  Score=247.92  Aligned_cols=175  Identities=28%  Similarity=0.402  Sum_probs=127.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .|..|++++|.||.|||++|.||||||+.|||++.+|.|||+|||.+..+.....                     ....
T Consensus       127 ~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~---------------------R~~~  185 (516)
T KOG0582|consen  127 SIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGD---------------------RQVT  185 (516)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecccCc---------------------eeeE
Confidence            3678999999999999999999999999999999999999999998876543110                     1122


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      .....+||+.|||||++.+. ..+|+.|+  ||||+              |++..|+..|..               |+.
T Consensus       186 rf~tfvgtp~wmAPEvl~q~-~~GYdfKa--DIwSf--------------GITA~ELA~G~a---------------Pf~  233 (516)
T KOG0582|consen  186 RFNTFVGTPCWMAPEVLMQQ-LHGYDFKA--DIWSF--------------GITACELAHGHA---------------PFS  233 (516)
T ss_pred             eeccccCcccccChHHhhhc-ccCccchh--hhhhh--------------hHHHHHHhcCCC---------------Ccc
Confidence            22678999999999997644 46799999  99999              999999887765               333


Q ss_pred             Cchhhhh-hhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         163 GSNVQKS-LQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       163 ~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      ..+..+. +..+. +.++..-  .+.++.+  ..+..+...+.++     ..||++||.+||||+++|+|+||+....+
T Consensus       234 k~pPmkvLl~tLq-n~pp~~~--t~~~~~d--~~k~~~ksf~e~i-----~~CL~kDP~kRptAskLlkh~FFk~~k~~  302 (516)
T KOG0582|consen  234 KYPPMKVLLLTLQ-NDPPTLL--TSGLDKD--EDKKFSKSFREMI-----ALCLVKDPSKRPTASKLLKHAFFKKAKSK  302 (516)
T ss_pred             cCChHHHHHHHhc-CCCCCcc--cccCChH--HhhhhcHHHHHHH-----HHHhhcCcccCCCHHHHhccHHHhhccch
Confidence            3332222 22232 2222111  1111111  1122235667777     99999999999999999999999988876

>KOG0665|consensus

Probab=99.96  E-value=4.4e-29  Score=235.79  Aligned_cols=186  Identities=26%  Similarity=0.344  Sum_probs=138.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.|+.|+++|++|||+.||+||||||+||++..++.+||+|||+|+.-.                          ..
T Consensus       118 ~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~--------------------------~~  171 (369)
T KOG0665|consen  118 ETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTED--------------------------TD  171 (369)
T ss_pred             HHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccC--------------------------cc
Confidence            3578999999999999999999999999999999999999999999998432                          22


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...+..+.|..|+|||++.   +..|...+  ||||+              ||++.||..+..     ..+++...++..
T Consensus       172 ~~mtpyVvtRyyrapevil---~~~~ke~v--diwSv--------------Gci~gEli~~~Vlf~g~d~idQ~~ki~~~  232 (369)
T KOG0665|consen  172 FMMTPYVVTRYYRAPEVIL---GMGYKENV--DIWSV--------------GCIMGELILGTVLFPGKDHIDQWNKIIEQ  232 (369)
T ss_pred             cccCchhheeeccCchhee---ccCCcccc--hhhhh--------------hhHHHHHhhceEEecCchHHHHHHHHHHH
Confidence            4677889999999999998   66788899  99999              999988766443     456666666665


Q ss_pred             cCCCCCCc--hhhhhhh----hhccCCCCCCCccccccccccc--cccccccchhHHHHHHHHhhhcCCCCCCCCChhhh
Q psy7309         157 ENGPSTGS--NVQKSLQ----KFQKSPPSVYREWRSSFEWSTV--RNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN  228 (454)
Q Consensus       157 ~~~p~~~~--~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~  228 (454)
                      ++.|...-  .......    ...+.....+.+.++...|...  .+...+..+.+++     .+||..||++|.|++++
T Consensus       233 lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~fpD~~f~~~~e~~~~~~~~ardll-----~~MLvi~pe~Risv~da  307 (369)
T KOG0665|consen  233 LGTPDPSFMKQLQPTVRNYVENRPQYQAISFSELFPDSLFPVVLEGSKLDCSLARDLL-----SKMLVIDPEKRISVDDA  307 (369)
T ss_pred             hcCCCHHHHHHhhHHHHHHhhcChHhhccchhhhCCcccccccccCCccchHHHHHHH-----HHhhccChhhcccHHHH
Confidence            55554321  1111111    1111122444555444445332  2235557778888     99999999999999999


Q ss_pred             hcCcccccC
Q psy7309         229 LCQPISLEG  237 (454)
Q Consensus       229 l~hp~f~~~  237 (454)
                      |.|||++-.
T Consensus       308 L~HPY~~vw  316 (369)
T KOG0665|consen  308 LRHPYIKVW  316 (369)
T ss_pred             hcCCeeeee
Confidence            999999833

>PRK00037 hisS histidyl-tRNA synthetase; Reviewed

Probab=99.95  E-value=3.7e-28  Score=249.97  Aligned_cols=151  Identities=15%  Similarity=0.218  Sum_probs=137.5

Q ss_pred             CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCCCCeEe
Q psy7309         293 KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRGGSIVT  364 (454)
Q Consensus       293 ~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~G~~~~  364 (454)
                      .+.++.|++       |.....+++|++.++++|++|||.+|.||+||+.+++..+        .+++|+|.|++|+.++
T Consensus         6 ~p~G~~d~~-------p~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~   78 (412)
T PRK00037          6 APRGTRDIL-------PEESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLT   78 (412)
T ss_pred             CCCCCCcCC-------HHHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEE
Confidence            445566666       7888899999999999999999999999999999998542        3679999999999999


Q ss_pred             eCCCCCHHHHHHHHHcCCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCc
Q psy7309         365 LPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNI  444 (454)
Q Consensus       365 Lr~d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~  444 (454)
                      ||||+|+|+||+++++. ..|+|+||+|+|||+++++.||+|||+|+|+||||.+ +..+|+|+|.++.++|+.+|++++
T Consensus        79 LRpd~T~~~ar~~~~~~-~~p~r~~~~g~vfR~e~~~~gr~ref~Q~g~ei~g~~-~~~~d~E~i~~~~~~l~~lg~~~~  156 (412)
T PRK00037         79 LRPEGTAPVVRAVIEHK-LQPFKLYYIGPMFRYERPQKGRYRQFHQFGVEVIGSD-SPLADAEVIALAADILKALGLKGL  156 (412)
T ss_pred             ecCCCcHHHHHHHHhCC-CCCeEEEEEcCccccCCCCCCcccceEEcCeeeeCCC-CcchhHHHHHHHHHHHHHcCCCce
Confidence            99999999999999876 4999999999999999899999999999999999998 788999999999999999999989


Q ss_pred             EEEcCccc
Q psy7309         445 SFAPHPRV  452 (454)
Q Consensus       445 ~i~i~~~~  452 (454)
                      .|.+|+.+
T Consensus       157 ~~~l~~~~  164 (412)
T PRK00037        157 KLLINSLG  164 (412)
T ss_pred             eeeeccCC
Confidence            99887764

>KOG0986|consensus

Probab=99.95  E-value=3e-29  Score=245.91  Aligned_cols=179  Identities=31%  Similarity=0.420  Sum_probs=136.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +++..++.||++||.+||+.+||.|||||+|||+|+.|+|+|+|+|+|..+.                          .+
T Consensus       287 ~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~--------------------------~g  340 (591)
T KOG0986|consen  287 QRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIP--------------------------EG  340 (591)
T ss_pred             HHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecC--------------------------CC
Confidence            4789999999999999999999999999999999999999999999999763                          35


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...++.+||..|||||++.   +..|+.++  |.||+              ||++|||+.|+.+.-..-.          
T Consensus       341 ~~~~~rvGT~GYMAPEvl~---ne~Y~~s~--Dwf~l--------------GCllYemi~G~sPFr~~Ke----------  391 (591)
T KOG0986|consen  341 KPIRGRVGTVGYMAPEVLQ---NEVYDFSP--DWFSL--------------GCLLYEMIAGHSPFRQRKE----------  391 (591)
T ss_pred             CccccccCcccccCHHHHc---CCcccCCc--cHHHH--------------HhHHHHHHcccCchhhhhh----------
Confidence            5667779999999999999   67799999  99999              9999998876652211100          


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                        ..-.+.+.+........+++.+             +++++++.     +.+|.+||++|..     ++++.+||||+.
T Consensus       392 --Kvk~eEvdrr~~~~~~ey~~kF-------------S~eakslc-----~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~  451 (591)
T KOG0986|consen  392 --KVKREEVDRRTLEDPEEYSDKF-------------SEEAKSLC-----EGLLTKDPEKRLGCRGEGAQEVKEHPFFKD  451 (591)
T ss_pred             --hhhHHHHHHHHhcchhhccccc-------------CHHHHHHH-----HHHHccCHHHhccCCCcCcchhhhCccccc
Confidence              0011122222225555566553             38899999     9999999999985     779999999996


Q ss_pred             CCCCCCCccCccccccCCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPPP  259 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~~  259 (454)
                      ..-+.+..    .++..+++|++
T Consensus       452 lnw~rlea----gml~PPfiPdp  470 (591)
T KOG0986|consen  452 LNWRRLEA----GMLEPPFIPDP  470 (591)
T ss_pred             CCHhHHhc----cCCCCCCCCCc
Confidence            33322211    44555556554

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.95  E-value=1.7e-28  Score=244.33  Aligned_cols=158  Identities=25%  Similarity=0.314  Sum_probs=122.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...                         ...
T Consensus        95 ~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~-------------------------~~~  149 (323)
T cd05571          95 DRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGI-------------------------SDG  149 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccc-------------------------cCC
Confidence            3578899999999999999999999999999999999999999999987431                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       150 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~elltg~~---------------Pf  195 (323)
T cd05571         150 ATMKTFCGTPEYLAPEVLE---DNDYGRAV--DWWGL--------------GVVMYEMMCGRL---------------PF  195 (323)
T ss_pred             CcccceecCccccChhhhc---CCCCCccc--cCccc--------------chhhhhhhcCCC---------------CC
Confidence            2234568999999999997   67788888  99999              999999887654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      ...+.......+. .....+|...             ++.+.++|     ++||+.||++||     ++.++++||||..
T Consensus       196 ~~~~~~~~~~~~~-~~~~~~p~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~  256 (323)
T cd05571         196 YNQDHEKLFELIL-MEEIRFPRTL-------------SPEAKSLL-----AGLLKKDPKQRLGGGPEDAKEIMEHRFFAS  256 (323)
T ss_pred             CCCCHHHHHHHHH-cCCCCCCCCC-------------CHHHHHHH-----HHHccCCHHHcCCCCCCCHHHHHcCCCcCC
Confidence            3333333333332 2233344332             36777888     999999999999     8999999999975


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       257 ~  257 (323)
T cd05571         257 I  257 (323)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>KOG0597|consensus

Probab=99.95  E-value=6e-29  Score=249.15  Aligned_cols=160  Identities=25%  Similarity=0.383  Sum_probs=130.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.|+.++.|++.||.|||+.+|+|||+||.|||++.+|.+|+||||+|+...                         ...
T Consensus       100 e~v~~~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~-------------------------~~t  154 (808)
T KOG0597|consen  100 EQVRAIAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMS-------------------------TNT  154 (808)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcc-------------------------cCc
Confidence            4689999999999999999999999999999999999999999999999764                         234


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...++..|||.|||||++.   +..|+..+  |+||+              ||++||++.|+|+...             
T Consensus       155 ~vltsikGtPlYmAPElv~---e~pyd~~s--DlWsl--------------GcilYE~~~G~PPF~a-------------  202 (808)
T KOG0597|consen  155 SVLTSIKGTPLYMAPELVE---EQPYDHTS--DLWSL--------------GCILYELYVGQPPFYA-------------  202 (808)
T ss_pred             eeeeeccCcccccCHHHHc---CCCccchh--hHHHH--------------HHHHHHHhcCCCCchH-------------
Confidence            4567789999999999998   89999999  99999              9999999998874332             


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                        .......+.+. .++...|...             ++....|+     .++|.+||.+|.|+.+++.|||++....
T Consensus       203 --~si~~Lv~~I~-~d~v~~p~~~-------------S~~f~nfl-----~gLL~kdP~~RltW~~Ll~HpF~k~~~~  259 (808)
T KOG0597|consen  203 --RSITQLVKSIL-KDPVKPPSTA-------------SSSFVNFL-----QGLLIKDPAQRLTWTDLLGHPFWKGKIN  259 (808)
T ss_pred             --HHHHHHHHHHh-cCCCCCcccc-------------cHHHHHHH-----HHHhhcChhhcccHHHHhcChHHhhhhh
Confidence              22222233333 3333334332             36667888     9999999999999999999999886543

>KOG0579|consensus

Probab=99.95  E-value=1.3e-28  Score=248.95  Aligned_cols=166  Identities=28%  Similarity=0.438  Sum_probs=133.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++|+-+++|+|.||+|||+++|||||||..|||++.+|.++|+|||.+....                         ...
T Consensus       130 ~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL~TldGdirLADFGVSAKn~-------------------------~t~  184 (1187)
T KOG0579|consen  130 DQIQVVCYQVLDALNWLHSQNIIHRDLKAGNILLTLDGDIRLADFGVSAKNK-------------------------STR  184 (1187)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhhhhccccceEEEecCcEeeecccccccch-------------------------hHH
Confidence            3688899999999999999999999999999999999999999999886432                         234


Q ss_pred             CCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ....+++|||+|||||++...  ...+|++++  |||||              |+++.||..+.|               
T Consensus       185 qkRDsFIGTPYWMAPEVvmCET~KD~PYDyka--DiWSl--------------GITLIEMAqiEP---------------  233 (1187)
T KOG0579|consen  185 QKRDSFIGTPYWMAPEVVMCETFKDQPYDYKA--DIWSL--------------GITLIEMAQIEP---------------  233 (1187)
T ss_pred             hhhccccCCcccccchheeeccccCCCchhhh--hHHhh--------------hhHHHHHhccCC---------------
Confidence            456789999999999998732  467899999  99999              999999866544               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      |-..-+....+-++.++.++.+-..   -.|+        ....+|+     ++||..||..||++.|+|+||||....+
T Consensus       234 PHhelnpMRVllKiaKSePPTLlqP---S~Ws--------~~F~DfL-----k~cL~Knp~~Rp~aaqll~Hpfv~~~~S  297 (1187)
T KOG0579|consen  234 PHHELNPMRVLLKIAKSEPPTLLQP---SHWS--------RSFSDFL-----KRCLVKNPRNRPPAAQLLKHPFVQNAPS  297 (1187)
T ss_pred             CccccchHHHHHHHhhcCCCcccCc---chhh--------hHHHHHH-----HHHHhcCCccCCCHHHHhhCcccccCCc
Confidence            3333344555556666666655332   2465        5566888     9999999999999999999999995554

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.95  E-value=1.3e-28  Score=240.53  Aligned_cols=176  Identities=24%  Similarity=0.383  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       110 ~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~--------------------------~  163 (290)
T cd07862         110 ETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSF--------------------------Q  163 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEeccC--------------------------C
Confidence            36789999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              ||++|||+++.+.     ..+.+..++..
T Consensus       164 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~g~~~f~~~~~~~~~~~i~~~  224 (290)
T cd07862         164 MALTSVVVTLWYRAPEVLL---QSSYATPV--DLWSV--------------GCIFAEMFRRKPLFRGSSDVDQLGKILDV  224 (290)
T ss_pred             cccccccccccccChHHHh---CCCCCCcc--chHHH--------------HHHHHHHHcCCCCcCCCCHHHHHHHHHHH
Confidence            2234567899999999987   56788888  99999              9999998776652     22233333322


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...|..... ..... +.   ...+.... ...++.+.+ ..++...+++     .+||+.||++|||+.|+|+||||
T Consensus       225 ~~~~~~~~~-~~~~~-~~---~~~~~~~~-~~~~~~~~~-~~~~~~~~li-----~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         225 IGLPGEEDW-PRDVA-LP---RQAFHSKS-AQPIEKFVT-DIDELGKDLL-----LKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             hCCCChhhc-hhhhc-cc---chhccCCC-CCCHHHHcc-CCCHHHHHHH-----HHHhccCchhcCCHHHHhcCCCC
Confidence            222221111 00000 00   00000000 001111111 1235667788     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>KOG0585|consensus

Probab=99.95  E-value=1.3e-28  Score=242.82  Aligned_cols=172  Identities=28%  Similarity=0.356  Sum_probs=128.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++|+++++++.||.|||.+|||||||||+|+|++.+|+|||+|||.+........                    ....
T Consensus       210 ~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~--------------------~~~d  269 (576)
T KOG0585|consen  210 QQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSD--------------------EGSD  269 (576)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeeccceeeecccCCc--------------------cccH
Confidence            47999999999999999999999999999999999999999999999875532100                    0122


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .....-+|||.|+|||.+..+....| +.+.  ||||+              |+++|-|+-|..               |
T Consensus       270 ~~L~~tvGTPAF~APE~c~~~~~~~~~g~a~--DiWal--------------GVTLYCllfG~~---------------P  318 (576)
T KOG0585|consen  270 DQLSRTVGTPAFFAPELCSGGNSFSYSGFAL--DIWAL--------------GVTLYCLLFGQL---------------P  318 (576)
T ss_pred             HHHhhcCCCccccchHhhcCCCCccccchhh--hhhhh--------------hhhHHHhhhccC---------------C
Confidence            23344799999999999984332333 3344  99999              777776433332               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      |.+....+...++. ..+..+|...           ...+.+++||     ++||++||.+|++..++..|||.......
T Consensus       319 F~~~~~~~l~~KIv-n~pL~fP~~p-----------e~~e~~kDli-----~~lL~KdP~~Ri~l~~ik~Hpwvt~~g~~  381 (576)
T KOG0585|consen  319 FFDDFELELFDKIV-NDPLEFPENP-----------EINEDLKDLI-----KRLLEKDPEQRITLPDIKLHPWVTRDGDS  381 (576)
T ss_pred             cccchHHHHHHHHh-cCcccCCCcc-----------cccHHHHHHH-----HHHhhcChhheeehhhheecceeccCCCC
Confidence            44444445555555 5566677663           2347888999     99999999999999999999999877554


Q ss_pred             C
Q psy7309         241 G  241 (454)
Q Consensus       241 ~  241 (454)
                      .
T Consensus       382 ~  382 (576)
T KOG0585|consen  382 P  382 (576)
T ss_pred             C
Confidence            3

>KOG0666|consensus

Probab=99.95  E-value=2.1e-28  Score=230.11  Aligned_cols=186  Identities=27%  Similarity=0.321  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC----CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE----DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~----~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      -++.|+.||+.|+.|||++-|+||||||.|||+..+    |.|||+|||+|+.+....                      
T Consensus       133 mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIlvmgdgperG~VKIaDlGlaR~~~~pl----------------------  190 (438)
T KOG0666|consen  133 MVKSILWQILDGVHYLHSNWVLHRDLKPANILVMGDGPERGRVKIADLGLARLFNNPL----------------------  190 (438)
T ss_pred             HHHHHHHHHHhhhHHHhhhheeeccCCcceEEEeccCCccCeeEeecccHHHHhhccc----------------------
Confidence            478999999999999999999999999999999888    889999999999775311                      


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC--------------Cch
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK--------------DRP  144 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~--------------~~~  144 (454)
                      ..-......+-|..|+|||.++  +..+|+..+  ||||.              |||+.||++              ..|
T Consensus       191 kpl~s~d~VVVTiWYRAPELLL--Ga~hYT~Ai--DvWAi--------------GCIfaElLtl~PlF~g~E~k~~~~~P  252 (438)
T KOG0666|consen  191 KPLASLDPVVVTIWYRAPELLL--GARHYTKAI--DVWAI--------------GCIFAELLTLEPLFKGREEKIKTKNP  252 (438)
T ss_pred             cccccCCceEEEEEecChHHhc--ccccccchh--hhHHH--------------HHHHHHHHccCccccchhhhcccCCC
Confidence            1112345678899999999998  467899999  99999              999999776              234


Q ss_pred             hhHHHHHHHhhhcCCCCCCch-h-------hhhhhhhccCCC--CCCCccccccccccccccccccchhHHHHHHHHhhh
Q psy7309         145 KTLEELKHNIRRENGPSTGSN-V-------QKSLQKFQKSPP--SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWC  214 (454)
Q Consensus       145 ~~~~~l~~~i~~~~~p~~~~~-~-------~~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  214 (454)
                      ...+++.+++..++.|....+ .       +..+..+.....  ..++.      |-... +..++.+.+|+     .+|
T Consensus       253 fq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~~~~~~n~sL~~------~~~~~-k~k~~~a~~LL-----~kl  320 (438)
T KOG0666|consen  253 FQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFRRHYYDNVSLHK------YYHKH-KVKDPSALDLL-----QKL  320 (438)
T ss_pred             chHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhHHhhcCcchHHH------HHHHh-cCCCchHHHHH-----HHH
Confidence            667788887776666654422 1       112222221110  01111      11111 22335577888     999


Q ss_pred             cCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         215 LNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       215 L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      |++||.+|+||+|+|+|+||.+..-+
T Consensus       321 L~yDP~kRIta~qAleh~yF~~d~lp  346 (438)
T KOG0666|consen  321 LTYDPIKRITAEQALEHPYFTEDPLP  346 (438)
T ss_pred             hccCchhhccHHHHhcccccccCCCC
Confidence            99999999999999999999986443

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.95  E-value=2.2e-28  Score=242.21  Aligned_cols=182  Identities=24%  Similarity=0.328  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE----ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI----DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl----~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .++.+++||+.||+|||++||+||||||+|||+    +.++.+||+|||+|.......                      
T Consensus       109 ~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~----------------------  166 (317)
T cd07868         109 MVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPL----------------------  166 (317)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCC----------------------
Confidence            578999999999999999999999999999999    455789999999997543110                      


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh------------
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT------------  146 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~------------  146 (454)
                      .........+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++..            
T Consensus       167 ~~~~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~el~~g~~~f~~~~~~~~~~~~  228 (317)
T cd07868         167 KPLADLDPVVVTFWYRAPELLLG--ARHYTKAI--DIWAI--------------GCIFAELLTSEPIFHCRQEDIKTSNP  228 (317)
T ss_pred             ccccccCCccccccccCCHHHcC--CCCcCchh--hHHHH--------------HHHHHHHHhCCCCccCCccccccccc
Confidence            11122345689999999999871  34578888  99999              99999877765422            


Q ss_pred             --HHHHHHHhhhcCCCCCCchhhhh---------hhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhc
Q psy7309         147 --LEELKHNIRRENGPSTGSNVQKS---------LQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCL  215 (454)
Q Consensus       147 --~~~l~~~i~~~~~p~~~~~~~~~---------~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L  215 (454)
                        ..++...+...+.|... .+...         ...+.... ......   ..+-.......++.+.+||     ++||
T Consensus       229 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~dli-----~~mL  298 (317)
T cd07868         229 YHHDQLDRIFNVMGFPADK-DWEDIKKMPEHSTLMKDFRRNT-YTNCSL---IKYMEKHKVKPDSKAFHLL-----QKLL  298 (317)
T ss_pred             ccHHHHHHHHHhcCCCChH-HhHHHhhccchhhhhhhhhccc-cCcccc---cchHHhcCCCCChHHHHHH-----HHHh
Confidence              23333333322222211 11110         00000000 000000   0000000011124456677     9999


Q ss_pred             CCCCCCCCChhhhhcCccc
Q psy7309         216 NHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       216 ~~dP~~Rpta~e~l~hp~f  234 (454)
                      ++||.+||||+|+|+||||
T Consensus       299 ~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         299 TMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             ccCcccCCCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.95  E-value=3.1e-28  Score=248.96  Aligned_cols=184  Identities=24%  Similarity=0.280  Sum_probs=123.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                        ...
T Consensus       182 ~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~------------------------~~~  237 (391)
T PHA03212        182 CDILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVD------------------------INA  237 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCccccccc------------------------ccc
Confidence            36789999999999999999999999999999999999999999999874321                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh------------hHHH
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK------------TLEE  149 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~------------~~~~  149 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++||+++|...            ....
T Consensus       238 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvil~elltg~~p~~~~~~~~~~~~~~~~  298 (391)
T PHA03212        238 NKYYGWAGTIATNAPELLA---RDPYGPAV--DIWSA--------------GIVLFEMATCHDSLFEKDGLDGDCDSDRQ  298 (391)
T ss_pred             cccccccCccCCCChhhhc---CCCCCcHH--HHHHH--------------HHHHHHHHHCCCCcCCcccccccCchhHH
Confidence            2234568999999999998   56788888  99999              9999997766531            1223


Q ss_pred             HHHHhhhcCCCCCCch------hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC
Q psy7309         150 LKHNIRRENGPSTGSN------VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP  223 (454)
Q Consensus       150 l~~~i~~~~~p~~~~~------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp  223 (454)
                      +...+...+.++....      ............. ..+...  ..|....  ....++.++|     .+||++||.+||
T Consensus       299 l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~--~~~~~l~~Li-----~~mL~~dP~~Rp  368 (391)
T PHA03212        299 IKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKSS-RKPGSR--PLWTNLY--ELPIDLEYLI-----CKMLAFDAHHRP  368 (391)
T ss_pred             HHHHHHHhcCChhhcCcchhHHHHHHHHHHHhccC-CCCCCC--CCHHHHh--hhhhhHHHHH-----HHHhcCChhhCC
Confidence            3333333333221111      1111111111111 011110  1122211  1124566777     999999999999


Q ss_pred             ChhhhhcCcccccCC
Q psy7309         224 SSEQNLCQPISLEGS  238 (454)
Q Consensus       224 ta~e~l~hp~f~~~~  238 (454)
                      ||+|+|+||||....
T Consensus       369 ta~elL~hp~f~~~~  383 (391)
T PHA03212        369 SAEALLDFAAFQDIP  383 (391)
T ss_pred             CHHHHhcChhhccCC
Confidence            999999999998644

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.95  E-value=1.7e-28  Score=240.12  Aligned_cols=181  Identities=22%  Similarity=0.266  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       103 ~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~-------------------------~~  157 (288)
T cd07871         103 HNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSV-------------------------PT  157 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccC-------------------------CC
Confidence            35788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......||+.|+|||++..  ...|+.++  ||||+              ||++|++++|++.     ..+.+...+..
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~~l~~l~~g~~pf~~~~~~~~~~~~~~~  219 (288)
T cd07871         158 KTYSNEVVTLWYRPPDVLLG--STEYSTPI--DMWGV--------------GCILYEMATGRPMFPGSTVKEELHLIFRL  219 (288)
T ss_pred             ccccCceecccccChHHhcC--CcccCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            22344578999999999862  35678888  99999              9999998776642     12222222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .+.|.... +..... ...-....+|.... ..|.... ...+++..+||     ++||++||++|||++|+++||||
T Consensus       220 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~dll-----~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         220 LGTPTEET-WPGITS-NEEFRSYLFPQYRA-QPLINHA-PRLDTDGIDLL-----SSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             hCCCChHH-hhcccc-chhhhccccCccCC-CchHHhC-CCCCHHHHHHH-----HHhcCcCcccCCCHHHHhcCCCC
Confidence            22222211 110000 00000011111100 0111111 12236677888     99999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.95  E-value=4.3e-28  Score=236.45  Aligned_cols=183  Identities=25%  Similarity=0.353  Sum_probs=120.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.....                        ...
T Consensus       100 ~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~------------------------~~~  155 (287)
T cd07848         100 EKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSE------------------------GSN  155 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccc------------------------ccc
Confidence            35788999999999999999999999999999999999999999999985421                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      .......||+.|+|||++.   +..++.++  |+||+              ||++||+++|+++.     .+.+.. +..
T Consensus       156 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~el~~g~~pf~~~~~~~~~~~-~~~  215 (287)
T cd07848         156 ANYTEYVATRWYRSPELLL---GAPYGKAV--DMWSV--------------GCILGELSDGQPLFPGESEIDQLFT-IQK  215 (287)
T ss_pred             ccccccccccccCCcHHHc---CCCCCCch--hHHhH--------------HHHHHHHHhCCCCCCCCCHHHHHHH-HHH
Confidence            1233457899999999997   56688888  99999              99999987766521     122211 222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ..+|.+.......... .......++.......++.......+..+.+||     ++||+.||++|||++|+|+||||
T Consensus       216 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll-----~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         216 VLGPLPAEQMKLFYSN-PRFHGLRFPAVNHPQSLERRYLGILSGVLLDLM-----KNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             hhCCCCHHHHHhhhcc-chhcccccCcccCcccHHHhhhcccCHHHHHHH-----HHHccCCcccCCCHHHHhcCCCC
Confidence            2222221111100000 000001111110000111111122345677777     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>KOG0201|consensus

Probab=99.95  E-value=9.9e-29  Score=242.02  Aligned_cols=156  Identities=29%  Similarity=0.447  Sum_probs=127.1

Q ss_pred             HHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCCC
Q psy7309           5 WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSH   84 (454)
Q Consensus         5 ~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (454)
                      --++++++.||.|||.++.+|||||+.|||+..+|.+||+|||.+.++..                         .....
T Consensus       114 ~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~-------------------------~~~rr  168 (467)
T KOG0201|consen  114 AVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTN-------------------------TVKRR  168 (467)
T ss_pred             eeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeec-------------------------hhhcc
Confidence            34789999999999999999999999999999999999999999987642                         22334


Q ss_pred             cCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCCc
Q psy7309          85 TGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGS  164 (454)
Q Consensus        85 ~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~~  164 (454)
                      .+++|||+|||||++.   +..|+.++  |||||              |++.+||..|.|               |..+.
T Consensus       169 ~tfvGTPfwMAPEVI~---~~~Y~~KA--DIWSL--------------GITaiEla~GeP---------------P~s~~  214 (467)
T KOG0201|consen  169 KTFVGTPFWMAPEVIK---QSGYDTKA--DIWSL--------------GITAIELAKGEP---------------PHSKL  214 (467)
T ss_pred             ccccccccccchhhhc---cccccchh--hhhhh--------------hHHHHHHhcCCC---------------CCccc
Confidence            7799999999999999   78999999  99999              999999988766               33333


Q ss_pred             hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         165 NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       165 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      .....+..+.+..++.+...     |        ++.+++|+     ..||++||+.||||.++|+|+|.+..
T Consensus       215 hPmrvlflIpk~~PP~L~~~-----~--------S~~~kEFV-----~~CL~k~P~~RpsA~~LLKh~FIk~a  269 (467)
T KOG0201|consen  215 HPMRVLFLIPKSAPPRLDGD-----F--------SPPFKEFV-----EACLDKNPEFRPSAKELLKHKFIKRA  269 (467)
T ss_pred             CcceEEEeccCCCCCccccc-----c--------CHHHHHHH-----HHHhhcCcccCcCHHHHhhhHHHHhc
Confidence            33344444444444444432     2        27788999     99999999999999999999999863

>KOG0669|consensus

Probab=99.95  E-value=4.4e-28  Score=222.15  Aligned_cols=193  Identities=23%  Similarity=0.309  Sum_probs=137.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+|+++++++++||.|+|+..|+|||+||+|+|++.+|.+||+|||+|+.+....                     +...
T Consensus       124 s~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~---------------------n~~k  182 (376)
T KOG0669|consen  124 SEIKKVMKGLMNGLYYIHRNKILHRDMKAANVLITKDGILKLADFGLARAFSTSK---------------------NVVK  182 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEEEcCCceEEeeccccccceeccc---------------------ccCC
Confidence            5799999999999999999999999999999999999999999999998664211                     1334


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch----hhHHHHHHHhhhc
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP----KTLEELKHNIRRE  157 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~----~~~~~l~~~i~~~  157 (454)
                      ...+..+-|..|++||.++  +...|+.+.  |||..              ||++.||+++.+    .+..+-...|+.+
T Consensus       183 prytnrvvTLwYrppEllL--G~r~yg~~i--DiWgA--------------gCimaeMwtrspimqgnteqqql~~Is~L  244 (376)
T KOG0669|consen  183 PRYTNRVVTLWYRPPELLL--GDREYGPPI--DIWGA--------------GCIMAEMWTRSPIMQGNTEQQQLHLISQL  244 (376)
T ss_pred             CCcccceeeeecCCHHHhh--cccccCCcc--hhHhH--------------HHHHHHHHccCccccCChHHHHHHHHHHH
Confidence            5578889999999999998  467899999  99999              999999998766    2333333444555


Q ss_pred             CCCCCCchh--hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         158 NGPSTGSNV--QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       158 ~~p~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+......+  ...+.-+..-...++|+......-+.+.+-..++++.+|+     ..||.+||.+|++++|+|+|.||.
T Consensus       245 cGs~tkevWP~~d~lpL~~sie~ePl~~~~~rkv~n~~kp~~kd~~a~dLl-----e~ll~~DP~kR~~ad~alnh~~F~  319 (376)
T KOG0669|consen  245 CGSITKEVWPNVDNLPLYQSIELEPLPKGQKRKVKNRLKPYVKDDEALDLL-----EKLLKLDPTKRIDADQALNHDFFW  319 (376)
T ss_pred             hccCCcccCCCcccchHHHhccCCCCCcchhhhhhhhcccccCChhHHHHH-----HHHhccCcccCcchHhhhchhhhh
Confidence            554433322  1222222211111133221100011111122346777888     999999999999999999999998


Q ss_pred             cCC
Q psy7309         236 EGS  238 (454)
Q Consensus       236 ~~~  238 (454)
                      ...
T Consensus       320 kdp  322 (376)
T KOG0669|consen  320 KDP  322 (376)
T ss_pred             cCC
Confidence            654

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.94  E-value=4.4e-28  Score=238.81  Aligned_cols=186  Identities=22%  Similarity=0.268  Sum_probs=120.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       103 ~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~-------------------------~~  157 (303)
T cd07869         103 ENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSV-------------------------PS  157 (303)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccC-------------------------CC
Confidence            36889999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh------HHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT------LEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~------~~~l~~~i~  155 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|+|++|.++.      ...+.....
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~l~~g~~pf~~~~~~~~~~~~~~~  219 (303)
T cd07869         158 HTYSNEVVTLWYRPPDVLLG--STEYSTCL--DMWGV--------------GCIFVEMIQGVAAFPGMKDIQDQLERIFL  219 (303)
T ss_pred             ccCCCCcccCCCCChHHHcC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCccHHHHHHHHHH
Confidence            22344678999999999861  34577778  99999              99999977765421      122322222


Q ss_pred             hcCCCCCCchhh-hhhhhhccCCCC-CCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         156 RENGPSTGSNVQ-KSLQKFQKSPPS-VYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       156 ~~~~p~~~~~~~-~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      ....|....... .....+...... ..+.... -.|+.   ....+.+.+|+     .+||+.||++|||++|+++|||
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~dli-----~~mL~~dp~~R~s~~~~l~h~~  290 (303)
T cd07869         220 VLGTPNEDTWPGVHSLPHFKPERFTLYSPKNLR-QAWNK---LSYVNHAEDLA-----SKLLQCFPKNRLSAQAALSHEY  290 (303)
T ss_pred             HhCCCChhhccchhhccccccccccccCCccHH-HHhhc---cCCChHHHHHH-----HHHhccCchhccCHHHHhcCcc
Confidence            222221111000 000000000000 0000000 00111   11235667888     9999999999999999999999


Q ss_pred             cccCCC
Q psy7309         234 SLEGSS  239 (454)
Q Consensus       234 f~~~~~  239 (454)
                      |.....
T Consensus       291 f~~~~~  296 (303)
T cd07869         291 FSDLPP  296 (303)
T ss_pred             cccCCh
Confidence            986543

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.94  E-value=2.8e-28  Score=253.02  Aligned_cols=183  Identities=23%  Similarity=0.313  Sum_probs=125.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||+|+.+..                          .
T Consensus       171 ~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~--------------------------~  224 (440)
T PTZ00036        171 LVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLA--------------------------G  224 (440)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhccC--------------------------C
Confidence            5788999999999999999999999999999999765 699999999985521                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|.+.     ..+.+...+..
T Consensus       225 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--DiwSl--------------Gvil~elltG~~pf~~~~~~~~~~~i~~~  286 (440)
T PTZ00036        225 QRSVSYICSRFYRAPELMLG--ATNYTTHI--DLWSL--------------GCIIAEMILGYPIFSGQSSVDQLVRIIQV  286 (440)
T ss_pred             CCcccCCCCcCccCHHHhcC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            22334688999999999861  34688888  99999              9999998776652     23344444443


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.|.... ....-..+   ....+|... ...|....+...++++.+||     .+||++||.+|||+.|+|+||||..
T Consensus       287 ~~~p~~~~-~~~~~~~~---~~~~~~~~~-~~~l~~~~p~~~~~~~~~li-----~~~L~~dP~~R~ta~e~l~hp~f~~  356 (440)
T PTZ00036        287 LGTPTEDQ-LKEMNPNY---ADIKFPDVK-PKDLKKVFPKGTPDDAINFI-----SQFLKYEPLKRLNPIEALADPFFDD  356 (440)
T ss_pred             hCCCCHHH-HHHhchhh---hcccCCccC-chhHHHHhccCCCHHHHHHH-----HHHCCCChhHCcCHHHHhCChhHHh
Confidence            33332111 10000000   011112110 01122222233446777888     9999999999999999999999986


Q ss_pred             CCC
Q psy7309         237 GSS  239 (454)
Q Consensus       237 ~~~  239 (454)
                      ...
T Consensus       357 ~~~  359 (440)
T PTZ00036        357 LRD  359 (440)
T ss_pred             hhc
Confidence            544

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.94  E-value=1.2e-27  Score=241.06  Aligned_cols=187  Identities=27%  Similarity=0.359  Sum_probs=125.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+++....                          .
T Consensus       119 ~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~--------------------------~  172 (355)
T cd07874         119 ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--------------------------S  172 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCC--------------------------c
Confidence            35788999999999999999999999999999999999999999999975321                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++++.     ...+.+...+..
T Consensus       173 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~g~~pf~~~~~~~~~~~~~~~  233 (355)
T cd07874         173 FMMTPYVVTRYYRAPEVIL---GMGYKENV--DIWSV--------------GCIMGEMVRHKILFPGRDYIDQWNKVIEQ  233 (355)
T ss_pred             cccCCccccCCccCHHHHc---CCCCCchh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            2234468899999999987   66788888  99999              999999776554     223333333333


Q ss_pred             cCCCCCCch--hhhhhhhhcc----CCCCCCCccccc--cccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh
Q psy7309         157 ENGPSTGSN--VQKSLQKFQK----SPPSVYREWRSS--FEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN  228 (454)
Q Consensus       157 ~~~p~~~~~--~~~~~~~~~~----~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~  228 (454)
                      .+.|.....  .......+..    .....++...+.  +++........+..+.+||     .+||+.||++|||++|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~mL~~dP~~Rps~~el  308 (355)
T cd07874         234 LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLL-----SKMLVIDPAKRISVDEA  308 (355)
T ss_pred             hCCCCHHHHHhhcHHHHHHHhcCCccccccchhhccccccccccccccccchHHHHHH-----HHHhcCCchhcCCHHHH
Confidence            333322110  1111111110    011111111110  1111111122335567788     99999999999999999


Q ss_pred             hcCcccccCC
Q psy7309         229 LCQPISLEGS  238 (454)
Q Consensus       229 l~hp~f~~~~  238 (454)
                      |+||||....
T Consensus       309 l~hp~~~~~~  318 (355)
T cd07874         309 LQHPYINVWY  318 (355)
T ss_pred             hcCcchhccc
Confidence            9999998543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.94  E-value=3.8e-28  Score=237.26  Aligned_cols=158  Identities=26%  Similarity=0.369  Sum_probs=118.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       102 ~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~--------------------------~  155 (285)
T cd05631         102 QRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPE--------------------------G  155 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCC--------------------------C
Confidence            35788999999999999999999999999999999999999999999875321                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.+               +
T Consensus       156 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------Gvil~el~~g~~p---------------f  201 (285)
T cd05631         156 ETVRGRVGTVGYMAPEVIN---NEKYTFSP--DWWGL--------------GCLIYEMIQGQSP---------------F  201 (285)
T ss_pred             CeecCCCCCCCccCHhhhc---CCCCCccc--CchhH--------------HHHHHHHHhCCCC---------------C
Confidence            1223457999999999998   67888888  99999              9999998776542               2


Q ss_pred             CCchh----hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCc
Q psy7309         162 TGSNV----QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQP  232 (454)
Q Consensus       162 ~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp  232 (454)
                      .....    ......+. .....++..             .++...+|+     ++||+.||.+|||     ++++++||
T Consensus       202 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~s~~~~~li-----~~~l~~~P~~R~~~~~~~~~~~~~h~  262 (285)
T cd05631         202 RKRKERVKREEVDRRVK-EDQEEYSEK-------------FSEDAKSIC-----RMLLTKNPKERLGCRGNGAAGVKQHP  262 (285)
T ss_pred             CCCCcchhHHHHHHHhh-cccccCCcc-------------CCHHHHHHH-----HHHhhcCHHHhcCCCCCCHHHHhcCH
Confidence            11110    01111111 122222222             236677888     9999999999997     89999999


Q ss_pred             ccccCC
Q psy7309         233 ISLEGS  238 (454)
Q Consensus       233 ~f~~~~  238 (454)
                      ||....
T Consensus       263 ~~~~~~  268 (285)
T cd05631         263 IFKNIN  268 (285)
T ss_pred             hhcCCC
Confidence            998643

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PTZ00284 protein kinase; Provisional

Probab=99.94  E-value=3.1e-28  Score=254.63  Aligned_cols=185  Identities=23%  Similarity=0.259  Sum_probs=118.5

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCC----------------CeEEecccchhhhhhhcCCCccccc
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYED----------------HVKIGDFGLATNILQKHAGPLAREL   64 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~----------------~vKL~DFGla~~~~~~~~~~~~~~~   64 (454)
                      ..++.++.||+.||+|||+ .|||||||||+|||++.++                .+||+|||++...            
T Consensus       231 ~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~------------  298 (467)
T PTZ00284        231 RHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDE------------  298 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccC------------
Confidence            3578899999999999998 5999999999999998765                4999999987532            


Q ss_pred             cCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          65 TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                                      ....+..+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++
T Consensus       299 ----------------~~~~~~~~gt~~Y~APE~~~---~~~~~~~~--DiwSl--------------Gvil~elltG~~  343 (467)
T PTZ00284        299 ----------------RHSRTAIVSTRHYRSPEVVL---GLGWMYST--DMWSM--------------GCIIYELYTGKL  343 (467)
T ss_pred             ----------------ccccccccCCccccCcHHhh---cCCCCcHH--HHHHH--------------HHHHHHHHhCCC
Confidence                            12234568999999999998   67889888  99999              999999887766


Q ss_pred             hh-----HHHHHHHhhhcCCCCCCchhh--------hhhhhhccCCCCCCCcccccccc-ccccccccccchhHHHHHHH
Q psy7309         145 KT-----LEELKHNIRRENGPSTGSNVQ--------KSLQKFQKSPPSVYREWRSSFEW-STVRNNIKSNFQHFLILIHQ  210 (454)
Q Consensus       145 ~~-----~~~l~~~i~~~~~p~~~~~~~--------~~~~~~~~~~~~~~p~~~~~~~~-~~~~~~~~~~~~~~li~~~~  210 (454)
                      ..     .+.+.. +....++++.....        ..+...........+.....+.. .........+.+.+||    
T Consensus       344 pf~~~~~~~~~~~-i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli----  418 (467)
T PTZ00284        344 LYDTHDNLEHLHL-MEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIARARPVREVIRDDLLCDLI----  418 (467)
T ss_pred             CCCCCChHHHHHH-HHHHcCCCCHHHHhhccchhHHHHhhhcccccccCCHHHHHhhhcccchhhhhchHHHHHHH----
Confidence            32     222222 22222222211100        00000000000000000000000 0000011123444566    


Q ss_pred             HhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         211 QKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       211 ~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                       .+||++||++||||+|+|+||||.....
T Consensus       419 -~~mL~~dP~~R~ta~e~L~Hp~~~~~~~  446 (467)
T PTZ00284        419 -YGLLHYDRQKRLNARQMTTHPYVLKYYP  446 (467)
T ss_pred             -HHhCCcChhhCCCHHHHhcCccccccCC
Confidence             9999999999999999999999987544

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.94  E-value=1.1e-27  Score=242.27  Aligned_cols=186  Identities=28%  Similarity=0.362  Sum_probs=123.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+++....                          .
T Consensus       126 ~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~--------------------------~  179 (364)
T cd07875         126 ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--------------------------S  179 (364)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCC--------------------------C
Confidence            35788999999999999999999999999999999999999999999975421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              ||++|+|++|+.     ...+.+...+..
T Consensus       180 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~ell~g~~pf~~~~~~~~~~~~~~~  240 (364)
T cd07875         180 FMMTPYVVTRYYRAPEVIL---GMGYKENV--DIWSV--------------GCIMGEMIKGGVLFPGTDHIDQWNKVIEQ  240 (364)
T ss_pred             CcccCCcccCCcCCHHHHh---CCCCCchh--hHHhH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            2234468899999999998   67788888  99999              999999777654     122333333333


Q ss_pred             cCCCCCCc--hhhhhhhhhccCCCCCCC-----ccccc--cccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhh
Q psy7309         157 ENGPSTGS--NVQKSLQKFQKSPPSVYR-----EWRSS--FEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ  227 (454)
Q Consensus       157 ~~~p~~~~--~~~~~~~~~~~~~~~~~p-----~~~~~--~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e  227 (454)
                      .+.|....  ........+.. ..+.+.     .....  +.|........+..+.+||     .+||+.||.+|||++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll-----~~mL~~dP~~R~t~~e  314 (364)
T cd07875         241 LGTPCPEFMKKLQPTVRTYVE-NRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLL-----SKMLVIDASKRISVDE  314 (364)
T ss_pred             cCCCCHHHHHhhhHHHHHHHh-hCCCcCCCChHhhCccccccccccccccccHHHHHHH-----HHhcCcCcccCCCHHH
Confidence            33332110  00001111110 001000     00000  1111111122335667888     9999999999999999


Q ss_pred             hhcCcccccCC
Q psy7309         228 NLCQPISLEGS  238 (454)
Q Consensus       228 ~l~hp~f~~~~  238 (454)
                      +|+||||....
T Consensus       315 ~L~hp~~~~~~  325 (364)
T cd07875         315 ALQHPYINVWY  325 (364)
T ss_pred             HhcCccccccc
Confidence            99999997543

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.94  E-value=1.2e-27  Score=238.74  Aligned_cols=184  Identities=27%  Similarity=0.372  Sum_probs=122.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......                      ...
T Consensus       103 ~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~----------------------~~~  160 (338)
T cd07859         103 EHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDT----------------------PTA  160 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCcccccccccc----------------------Ccc
Confidence            4678899999999999999999999999999999999999999999997542110                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++.. ....|+.++  ||||+              ||++|||++|++..     ...+......
T Consensus       161 ~~~~~~~~t~~y~aPE~~~~-~~~~~~~~~--DvwSl--------------Gvvl~el~tg~~pf~~~~~~~~~~~~~~~  223 (338)
T cd07859         161 IFWTDYVATRWYRAPELCGS-FFSKYTPAI--DIWSI--------------GCIFAEVLTGKPLFPGKNVVHQLDLITDL  223 (338)
T ss_pred             ccccCCCCCCCcCCHHHHhc-cccccCchh--HHHHH--------------HHHHHHHHcCCCCCCCCChHHHHHHHHHH
Confidence            22345689999999999762 125678888  99999              99999987766522     1112111111


Q ss_pred             cCCCCCCch-------hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTGSN-------VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~~~-------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+.|.....       ....+..+.......+....+          ..++.+.+++     .+||+.||++|||++|++
T Consensus       224 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~li-----~~~l~~~P~~Rpt~~e~l  288 (338)
T cd07859         224 LGTPSPETISRVRNEKARRYLSSMRKKQPVPFSQKFP----------NADPLALRLL-----ERLLAFDPKDRPTAEEAL  288 (338)
T ss_pred             hCCCCHHHHHHhhhhhHHHHHHhhcccCCCchHHhcC----------CCChHHHHHH-----HHHcCcCcccCCCHHHHh
Confidence            122211100       011111111111111111111          1235566777     999999999999999999


Q ss_pred             cCcccccCCC
Q psy7309         230 CQPISLEGSS  239 (454)
Q Consensus       230 ~hp~f~~~~~  239 (454)
                      +||||.....
T Consensus       289 ~hp~f~~~~~  298 (338)
T cd07859         289 ADPYFKGLAK  298 (338)
T ss_pred             cCchhhhcCc
Confidence            9999986554

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.94  E-value=2.3e-27  Score=236.29  Aligned_cols=158  Identities=24%  Similarity=0.322  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      +.++.++.||+.||+|||+ +||+||||||+|||++.++.+||+|||++.....                         .
T Consensus        95 ~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~-------------------------~  149 (325)
T cd05594          95 DRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIK-------------------------D  149 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCC-------------------------C
Confidence            4678899999999999997 7999999999999999999999999999874311                         1


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|..               |
T Consensus       150 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~tG~~---------------P  195 (325)
T cd05594         150 GATMKTFCGTPEYLAPEVLE---DNDYGRAV--DWWGL--------------GVVMYEMMCGRL---------------P  195 (325)
T ss_pred             CcccccccCCcccCCHHHHc---cCCCCCcc--ccccc--------------cceeeeeccCCC---------------C
Confidence            11223457999999999997   66788888  99999              999999887654               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCcccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISL  235 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~  235 (454)
                      +...........+. .....+|..             .++...++|     ++||+.||++|+     ++.++++||||.
T Consensus       196 f~~~~~~~~~~~i~-~~~~~~p~~-------------~~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~il~h~~~~  256 (325)
T cd05594         196 FYNQDHEKLFELIL-MEEIRFPRT-------------LSPEAKSLL-----SGLLKKDPKQRLGGGPDDAKEIMQHKFFA  256 (325)
T ss_pred             CCCCCHHHHHHHHh-cCCCCCCCC-------------CCHHHHHHH-----HHHhhcCHHHhCCCCCCCHHHHhcCCCcC
Confidence            22222222222222 222333333             236677888     999999999997     899999999998


Q ss_pred             cC
Q psy7309         236 EG  237 (454)
Q Consensus       236 ~~  237 (454)
                      ..
T Consensus       257 ~~  258 (325)
T cd05594         257 GI  258 (325)
T ss_pred             CC
Confidence            53

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=9.7e-28  Score=237.64  Aligned_cols=158  Identities=28%  Similarity=0.407  Sum_probs=121.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....                         ..
T Consensus        93 ~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~-------------------------~~  147 (312)
T cd05585          93 SRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMK-------------------------DD  147 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCcc-------------------------CC
Confidence            46788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+               |+
T Consensus       148 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dvwsl--------------Gvil~el~tg~~---------------pf  193 (312)
T cd05585         148 DKTNTFCGTPEYLAPELLL---GHGYTKAV--DWWTL--------------GVLLYEMLTGLP---------------PF  193 (312)
T ss_pred             CccccccCCcccCCHHHHc---CCCCCCcc--ceech--------------hHHHHHHHhCCC---------------Cc
Confidence            2234568999999999998   67788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC---ChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP---SSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp---ta~e~l~hp~f~~~  237 (454)
                      .+.........+. .....+|..             .++.+.++|     .+||+.||++||   ++.|++.||||...
T Consensus       194 ~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~li-----~~~L~~dp~~R~~~~~~~e~l~hp~~~~~  253 (312)
T cd05585         194 YDENVNEMYRKIL-QEPLRFPDG-------------FDRDAKDLL-----IGLLSRDPTRRLGYNGAQEIKNHPFFSQL  253 (312)
T ss_pred             CCCCHHHHHHHHH-cCCCCCCCc-------------CCHHHHHHH-----HHHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence            3333333333333 223333333             236677888     999999999997   57999999999864

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.94  E-value=1.2e-27  Score=233.35  Aligned_cols=176  Identities=26%  Similarity=0.354  Sum_probs=118.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       108 ~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~--------------------------~  161 (288)
T cd07863         108 ETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSC--------------------------Q  161 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccccC--------------------------c
Confidence            46789999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      .......||..|+|||++.   +..++.++  ||||+              ||++|+|+++++..     .+.+...+..
T Consensus       162 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~~l~~l~~g~~~f~~~~~~~~~~~~~~~  222 (288)
T cd07863         162 MALTPVVVTLWYRAPEVLL---QSTYATPV--DMWSV--------------GCIFAEMFRRKPLFCGNSEADQLGKIFDL  222 (288)
T ss_pred             ccCCCccccccccCchHhh---CCCCCCcc--hhhhH--------------HHHHHHHHhCCcCcCCCCHHHHHHHHHHH
Confidence            1233457899999999987   56788888  99999              99999987766521     1222222221


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .+.|.... +.... .   .....+..... ..+....+ ..+....+++     .+||+.||++|||+.|++.||||
T Consensus       223 ~~~~~~~~-~~~~~-~---~~~~~~~~~~~-~~~~~~~~-~~~~~~~~li-----~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         223 IGLPPEDD-WPRDV-T---LPRGAFSPRGP-RPVQSVVP-EIEESGAQLL-----LEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             hCCCChhh-Ccccc-c---ccccccCCCCC-CchHHhCc-CcCHHHHHHH-----HHHhccCcccCCCHHHHhcCCCC
Confidence            11111110 00000 0   00000000000 01111111 1235567888     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=2.7e-27  Score=236.14  Aligned_cols=160  Identities=26%  Similarity=0.377  Sum_probs=120.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                         ...
T Consensus        96 ~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~-------------------------~~~  150 (330)
T cd05586          96 DRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANL-------------------------TDN  150 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCC-------------------------CCC
Confidence            4678899999999999999999999999999999999999999999987432                         112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++..  ...++.++  ||||+              ||++|+|++|..               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--Dvwsl--------------Gvil~elltG~~---------------Pf  197 (330)
T cd05586         151 KTTNTFCGTTEYLAPEVLLD--EKGYTKHV--DFWSL--------------GVLVFEMCCGWS---------------PF  197 (330)
T ss_pred             CCccCccCCccccCHHHHcC--CCCCCCcc--ceecc--------------ccEEEEeccCCC---------------CC
Confidence            22345689999999999862  33577888  99999              999999887654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC----ChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP----SSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp----ta~e~l~hp~f~~~  237 (454)
                      ...........+... ...++..            ..++...+++     ++||+.||++||    ++.|+++||||...
T Consensus       198 ~~~~~~~~~~~i~~~-~~~~~~~------------~~~~~~~~li-----~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~  259 (330)
T cd05586         198 YAEDTQQMYRNIAFG-KVRFPKN------------VLSDEGRQFV-----KGLLNRNPQHRLGAHRDAVELKEHPFFADI  259 (330)
T ss_pred             CCCCHHHHHHHHHcC-CCCCCCc------------cCCHHHHHHH-----HHHcCCCHHHCCCCCCCHHHHhcCccccCC
Confidence            333333333333222 2223322            1236677888     999999999998    68999999999853

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.94  E-value=1.9e-27  Score=240.22  Aligned_cols=186  Identities=29%  Similarity=0.392  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+++...                          ..
T Consensus       123 ~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~--------------------------~~  176 (359)
T cd07876         123 ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAC--------------------------TN  176 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccc--------------------------cC
Confidence            3578899999999999999999999999999999999999999999987432                          11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|+..     ..+.+...+..
T Consensus       177 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~el~tg~~pf~~~~~~~~~~~~~~~  237 (359)
T cd07876         177 FMMTPYVVTRYYRAPEVIL---GMGYKENV--DIWSV--------------GCIMGELVKGSVIFQGTDHIDQWNKVIEQ  237 (359)
T ss_pred             ccCCCCcccCCCCCchhcc---CCCCCcch--hhHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            2234568899999999998   67788888  99999              9998887766541     22233233333


Q ss_pred             cCCCCCCch--hhhhhhhhccCCCCCCC-----ccccccccc--cccccccccchhHHHHHHHHhhhcCCCCCCCCChhh
Q psy7309         157 ENGPSTGSN--VQKSLQKFQKSPPSVYR-----EWRSSFEWS--TVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ  227 (454)
Q Consensus       157 ~~~p~~~~~--~~~~~~~~~~~~~~~~p-----~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e  227 (454)
                      .+.|.....  .......+.. ....++     +..+.+.+.  .......++.+.+||     .+||+.||++|||+.|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~mL~~dP~~R~t~~e  311 (359)
T cd07876         238 LGTPSAEFMNRLQPTVRNYVE-NRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLL-----SKMLVIDPDKRISVDE  311 (359)
T ss_pred             cCCCcHHHHHHHHHHHHHHHh-hCCCCCCcchhhhccccccccccccccccchhHHHHH-----HHHhccCcccCCCHHH
Confidence            333322110  0111111111 111111     100000000  001122346677888     9999999999999999


Q ss_pred             hhcCcccccCC
Q psy7309         228 NLCQPISLEGS  238 (454)
Q Consensus       228 ~l~hp~f~~~~  238 (454)
                      +|+||||....
T Consensus       312 ~l~hp~~~~~~  322 (359)
T cd07876         312 ALRHPYITVWY  322 (359)
T ss_pred             HhcCchhhhhc
Confidence            99999998644

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.94  E-value=1.4e-27  Score=238.31  Aligned_cols=157  Identities=25%  Similarity=0.319  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                         ..
T Consensus        95 ~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~-------------------------~~  149 (328)
T cd05593          95 DRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGIT-------------------------DA  149 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCC-------------------------cc
Confidence            46788999999999999999999999999999999999999999999874311                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              ||++|+|++|+.               |+
T Consensus       150 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~elltG~~---------------Pf  195 (328)
T cd05593         150 ATMKTFCGTPEYLAPEVLE---DNDYGRAV--DWWGL--------------GVVMYEMMCGRL---------------PF  195 (328)
T ss_pred             cccccccCCcCccChhhhc---CCCCCccC--Ccccc--------------chHHHHHhhCCC---------------CC
Confidence            1233467999999999997   66788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      ...........+. .....+|...             ++...++|     ++||+.||++|+     ++.|+++||||..
T Consensus       196 ~~~~~~~~~~~~~-~~~~~~p~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~il~h~~~~~  256 (328)
T cd05593         196 YNQDHEKLFELIL-MEDIKFPRTL-------------SADAKSLL-----SGLLIKDPNKRLGGGPDDAKEIMRHSFFTG  256 (328)
T ss_pred             CCCCHHHHHHHhc-cCCccCCCCC-------------CHHHHHHH-----HHHcCCCHHHcCCCCCCCHHHHhcCCCcCC
Confidence            3322222222222 2223334332             36677888     999999999997     8999999999975

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0604|consensus

Probab=99.94  E-value=1.8e-27  Score=222.90  Aligned_cols=165  Identities=23%  Similarity=0.315  Sum_probs=124.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ++-.|++||..|+.|||+.+|.||||||+|+|...++   .+||+|||+|+...                          
T Consensus       162 ea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~t~--------------------------  215 (400)
T KOG0604|consen  162 EASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKETQ--------------------------  215 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccccC--------------------------
Confidence            5778999999999999999999999999999997654   58999999998542                          


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ......+.+-||+|.|||++.   ..+|+..+  |+||+              |+++|-|+.|-|+....--        
T Consensus       216 ~~~~L~TPc~TPyYvaPevlg---~eKydksc--dmwSl--------------gVimYIlLCGyPPFYS~hg--------  268 (400)
T KOG0604|consen  216 EPGDLMTPCFTPYYVAPEVLG---PEKYDKSC--DMWSL--------------GVIMYILLCGYPPFYSNHG--------  268 (400)
T ss_pred             CCccccCCcccccccCHHHhC---chhcCCCC--Cccch--------------hHHHHHhhcCCCcccccCC--------
Confidence            134556678999999999998   67899999  99999              7777775554442221100        


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                          .....-.++-...+.+.||+.    +|+.     .++.++++|     +.+|..+|.+|.|++|++.|||...-.
T Consensus       269 ----~aispgMk~rI~~gqy~FP~p----EWs~-----VSe~aKdlI-----R~LLkt~PteRlTI~~~m~hpwi~~~~  329 (400)
T KOG0604|consen  269 ----LAISPGMKRRIRTGQYEFPEP----EWSC-----VSEAAKDLI-----RKLLKTEPTERLTIEEVMDHPWINQYE  329 (400)
T ss_pred             ----ccCChhHHhHhhccCccCCCh----hHhH-----HHHHHHHHH-----HHHhcCCchhheeHHHhhcCchhcccc
Confidence                000000111111556667765    5754     458888999     999999999999999999999998543

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.94  E-value=1.6e-27  Score=237.02  Aligned_cols=158  Identities=28%  Similarity=0.419  Sum_probs=121.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus        96 ~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~-------------------------~~  150 (320)
T cd05590          96 ARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIF-------------------------NG  150 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCc-------------------------CC
Confidence            35788999999999999999999999999999999999999999999874311                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~g~~---------------Pf  196 (320)
T cd05590         151 KTTSTFCGTPDYIAPEILQ---EMLYGPSV--DWWAM--------------GVLLYEMLCGHA---------------PF  196 (320)
T ss_pred             CcccccccCccccCHHHHc---CCCCCCcc--chhhh--------------HHHHHHHhhCCC---------------CC
Confidence            2233467999999999987   66788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh------hhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS------EQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta------~e~l~hp~f~  235 (454)
                      ...+.......+. .....+|...             +....++|     ++||+.||++||++      +++++||||.
T Consensus       197 ~~~~~~~~~~~i~-~~~~~~~~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~  257 (320)
T cd05590         197 EAENEDDLFEAIL-NDEVVYPTWL-------------SQDAVDIL-----KAFMTKNPTMRLGSLTLGGEEAILRHPFFK  257 (320)
T ss_pred             CCCCHHHHHHHHh-cCCCCCCCCC-------------CHHHHHHH-----HHHcccCHHHCCCCCCCCCHHHHHcCCCcC
Confidence            3333333333333 2223334332             26677888     99999999999998      8999999997


Q ss_pred             cC
Q psy7309         236 EG  237 (454)
Q Consensus       236 ~~  237 (454)
                      ..
T Consensus       258 ~~  259 (320)
T cd05590         258 EL  259 (320)
T ss_pred             CC
Confidence            53

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.94  E-value=1.6e-27  Score=237.93  Aligned_cols=154  Identities=26%  Similarity=0.343  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                           
T Consensus       118 ~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~---------------------------  170 (329)
T PTZ00263        118 DVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPD---------------------------  170 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCC---------------------------
Confidence            35778999999999999999999999999999999999999999999874421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       .....+||+.|+|||++.   +..++.++  ||||+              ||++|||++|..               |+
T Consensus       171 -~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~elltg~~---------------pf  215 (329)
T PTZ00263        171 -RTFTLCGTPEYLAPEVIQ---SKGHGKAV--DWWTM--------------GVLLYEFIAGYP---------------PF  215 (329)
T ss_pred             -CcceecCChhhcCHHHHc---CCCCCCcc--eeech--------------HHHHHHHHcCCC---------------CC
Confidence             122357999999999998   56678888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                      .+.........+. .....+|...             +....+||     ++||+.||.+||+     +++++.||||..
T Consensus       216 ~~~~~~~~~~~i~-~~~~~~p~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~  276 (329)
T PTZ00263        216 FDDTPFRIYEKIL-AGRLKFPNWF-------------DGRARDLV-----KGLLQTDHTKRLGTLKGGVADVKNHPYFHG  276 (329)
T ss_pred             CCCCHHHHHHHHh-cCCcCCCCCC-------------CHHHHHHH-----HHHhhcCHHHcCCCCCCCHHHHhcCCccCC
Confidence            3333333333333 2233344432             26677888     9999999999997     699999999985

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=1.1e-27  Score=241.88  Aligned_cols=181  Identities=27%  Similarity=0.318  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||.|||++||+||||||+|||++.++.+||+|||++....                          ..
T Consensus       157 ~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~--------------------------~~  210 (357)
T PHA03209        157 DQALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPV--------------------------VA  210 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccc--------------------------cC
Confidence            4678999999999999999999999999999999999999999999987421                          11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-chh--------------h
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-RPK--------------T  146 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-~~~--------------~  146 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++|||+++ .+.              .
T Consensus       211 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvvl~ell~~~~~~f~~~~~~~~~~~~~~  271 (357)
T PHA03209        211 PAFLGLAGTVETNAPEVLA---RDKYNSKA--DIWSA--------------GIVLFEMLAYPSTIFEDPPSTPEEYVKSC  271 (357)
T ss_pred             cccccccccccccCCeecC---CCCCCchh--hHHHH--------------HHHHHHHHHcCCccccCCCCcHHHHHHHH
Confidence            1233467999999999998   66788888  99999              9999996542 110              1


Q ss_pred             HHHHHHHhhhcCCCC---CCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCC
Q psy7309         147 LEELKHNIRRENGPS---TGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKR  222 (454)
Q Consensus       147 ~~~l~~~i~~~~~p~---~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~R  222 (454)
                      ...+...+...+...   ...........+.. ......|..    .+........+....++|     .+||+.||++|
T Consensus       272 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~li-----~~mL~~dP~~R  342 (357)
T PHA03209        272 HSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLERQPYT----RYPCFQRVNLPIDGEFLV-----HKMLTFDAAMR  342 (357)
T ss_pred             HHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccCCCccc----ccHHHhccCCCchHHHHH-----HHHHcCCcccC
Confidence            112222222111111   10011111111100 000000000    011111112335666777     99999999999


Q ss_pred             CChhhhhcCccccc
Q psy7309         223 PSSEQNLCQPISLE  236 (454)
Q Consensus       223 pta~e~l~hp~f~~  236 (454)
                      |||.|+|+||||..
T Consensus       343 pta~e~l~hp~f~~  356 (357)
T PHA03209        343 PSAEEILNYPMFAQ  356 (357)
T ss_pred             cCHHHHhcCchhcc
Confidence            99999999999974

>KOG0595|consensus

Probab=99.94  E-value=1.7e-27  Score=231.75  Aligned_cols=162  Identities=25%  Similarity=0.359  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC------CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE------DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~------~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      .++.++.||+.||++||+++||||||||+|||++.+      -.+||+|||+|+.+.                       
T Consensus       110 t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~-----------------------  166 (429)
T KOG0595|consen  110 TARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQ-----------------------  166 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCC-----------------------
Confidence            578999999999999999999999999999999875      248999999999763                       


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                         ......+.+|+|.|||||++.   ...|+.|+  |+||+              |+++|+|++|++            
T Consensus       167 ---~~~~a~tlcGSplYMAPEV~~---~~~YdAKA--DLWSi--------------G~Ilyq~l~g~~------------  212 (429)
T KOG0595|consen  167 ---PGSMAETLCGSPLYMAPEVIM---SQQYDAKA--DLWSI--------------GTILYQCLTGKP------------  212 (429)
T ss_pred             ---chhHHHHhhCCccccCHHHHH---hccccchh--hHHHH--------------HHHHHHHHhCCC------------
Confidence               234556789999999999998   78999999  99999              999999887665            


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                         |+...+..+.+..+.++... .|...          ...++...+++     ...|..+|..|.+..+-+.|++...
T Consensus       213 ---Pf~a~t~~eL~~~~~k~~~~-~~~~~----------~~~s~~~~~Ll-----~~ll~~~~~~~~~~~~~~~~~~l~~  273 (429)
T KOG0595|consen  213 ---PFDAETPKELLLYIKKGNEI-VPVLP----------AELSNPLRELL-----ISLLQRNPKDRISFEDFFDHPFLAA  273 (429)
T ss_pred             ---CccccCHHHHHHHHhccccc-cCchh----------hhccCchhhhh-----hHHHhcCccccCchHHhhhhhhccc
Confidence               45555555555555433222 22211          22335666888     8999999999999999999999887


Q ss_pred             CCCC
Q psy7309         237 GSSS  240 (454)
Q Consensus       237 ~~~~  240 (454)
                      ....
T Consensus       274 ~p~~  277 (429)
T KOG0595|consen  274 NPQD  277 (429)
T ss_pred             Cccc
Confidence            6643

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.94  E-value=3.4e-27  Score=234.83  Aligned_cols=157  Identities=27%  Similarity=0.354  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                         ...
T Consensus        96 ~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~-------------------------~~~  150 (323)
T cd05575          96 PRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGI-------------------------EHS  150 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccc-------------------------cCC
Confidence            3577899999999999999999999999999999999999999999987431                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~ell~g~~---------------pf  196 (323)
T cd05575         151 KTTSTFCGTPEYLAPEVLR---KQPYDRTV--DWWCL--------------GAVLYEMLYGLP---------------PF  196 (323)
T ss_pred             CccccccCChhhcChhhhc---CCCCCccc--ccccc--------------chhhhhhhcCCC---------------CC
Confidence            2234567999999999987   66788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta----~e~l~hp~f~~  236 (454)
                      ...+.......+... ...++..             .++...++|     ++||+.||++||++    .|++.||||..
T Consensus       197 ~~~~~~~~~~~i~~~-~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~R~~~~~~~~~il~~~~~~~  256 (323)
T cd05575         197 YSRDTAEMYDNILNK-PLRLKPN-------------ISVSARHLL-----EGLLQKDRTKRLGAKDDFLEIKNHVFFSS  256 (323)
T ss_pred             CCCCHHHHHHHHHcC-CCCCCCC-------------CCHHHHHHH-----HHHhhcCHHhCCCCCCCHHHHHcCCCcCC
Confidence            333333333333322 2222222             126677888     99999999999998    59999999975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.94  E-value=1.8e-27  Score=236.95  Aligned_cols=158  Identities=23%  Similarity=0.324  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus        95 ~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~-------------------------~~  149 (323)
T cd05595          95 ERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGIS-------------------------DG  149 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccC-------------------------CC
Confidence            46788999999999999999999999999999999999999999999874311                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.               |+
T Consensus       150 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvil~ell~g~~---------------Pf  195 (323)
T cd05595         150 ATMKTFCGTPEYLAPEVLE---DNDYGRAV--DWWGL--------------GVVMYEMMCGRL---------------PF  195 (323)
T ss_pred             CccccccCCcCcCCccccc---CCCCCchh--chhhh--------------HHHHHHHHhCCC---------------CC
Confidence            2233467999999999997   66788888  99999              999999877653               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      ...........+. .....+|...             ++...++|     .+||+.||++|+     ++.++++||||..
T Consensus       196 ~~~~~~~~~~~~~-~~~~~~p~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~  256 (323)
T cd05595         196 YNQDHERLFELIL-MEEIRFPRTL-------------SPEAKSLL-----AGLLKKDPKQRLGGGPSDAKEVMEHRFFLS  256 (323)
T ss_pred             CCCCHHHHHHHHh-cCCCCCCCCC-------------CHHHHHHH-----HHHccCCHHHhCCCCCCCHHHHHcCCCcCC
Confidence            2222222222222 1222333332             36677888     999999999998     8999999999986


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       257 ~  257 (323)
T cd05595         257 I  257 (323)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>KOG0610|consensus

Probab=99.94  E-value=4.6e-27  Score=228.80  Aligned_cols=186  Identities=24%  Similarity=0.278  Sum_probs=142.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCcccc----cc---------Ccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE----LT---------GYI   68 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~----~~---------~~~   68 (454)
                      +.|+.++.+|+.||+|||-.|||.|||||||||+-++|+|-|+||.|+..............    ..         +-.
T Consensus       179 ~~aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f  258 (459)
T KOG0610|consen  179 SAARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCF  258 (459)
T ss_pred             hhHHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCccccccccccc
Confidence            46899999999999999999999999999999999999999999999976522111000000    00         000


Q ss_pred             CCC-CCC-----------------CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHH
Q psy7309          69 LPP-IDS-----------------TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRV  130 (454)
Q Consensus        69 ~~~-~~~-----------------~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~  130 (454)
                      ++. ...                 ......+....+++||-.|.|||++.   +.+.+..+  |+|++            
T Consensus       259 ~~r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~---G~GHgsAV--DWWtf------------  321 (459)
T KOG0610|consen  259 SPRCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIR---GEGHGSAV--DWWTF------------  321 (459)
T ss_pred             ccchhccccccccccccccccchhhhcCCCCccccccccccccccceeee---cCCCCchh--hHHHH------------
Confidence            000 000                 00013345677899999999999999   78889999  99999            


Q ss_pred             hcceeeeeecCCchhhHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHH
Q psy7309         131 LWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQ  210 (454)
Q Consensus       131 ~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~  210 (454)
                        ||++|||+-|               ..||.+.+..+++.++. ..+..||...           ..+..+++||    
T Consensus       322 --GIflYEmLyG---------------~TPFKG~~~~~Tl~NIv-~~~l~Fp~~~-----------~vs~~akDLI----  368 (459)
T KOG0610|consen  322 --GIFLYEMLYG---------------TTPFKGSNNKETLRNIV-GQPLKFPEEP-----------EVSSAAKDLI----  368 (459)
T ss_pred             --HHHHHHHHhC---------------CCCcCCCCchhhHHHHh-cCCCcCCCCC-----------cchhHHHHHH----
Confidence              9999996443               35888888888888888 5566677763           3457889999    


Q ss_pred             HhhhcCCCCCCCCC----hhhhhcCcccccCC
Q psy7309         211 QKWCLNHDPSKRPS----SEQNLCQPISLEGS  238 (454)
Q Consensus       211 ~~~~L~~dP~~Rpt----a~e~l~hp~f~~~~  238 (454)
                       +++|.+||++|..    |.|+.+||||....
T Consensus       369 -r~LLvKdP~kRlg~~rGA~eIK~HpFF~gVn  399 (459)
T KOG0610|consen  369 -RKLLVKDPSKRLGSKRGAAEIKRHPFFEGVN  399 (459)
T ss_pred             -HHHhccChhhhhccccchHHhhcCccccCCC
Confidence             9999999999999    99999999998643

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.94  E-value=4e-27  Score=235.04  Aligned_cols=164  Identities=25%  Similarity=0.306  Sum_probs=117.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                        ...
T Consensus       105 ~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~------------------------~~~  160 (332)
T cd05614         105 DEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLS------------------------EEK  160 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccc------------------------cCC
Confidence            46788999999999999999999999999999999999999999999875421                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++..  ...++.++  ||||+              ||++|||++|.......           .
T Consensus       161 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~elltg~~pf~~~-----------~  211 (332)
T cd05614         161 ERTYSFCGTIEYMAPEIIRG--KGGHGKAV--DWWSL--------------GILIFELLTGASPFTLE-----------G  211 (332)
T ss_pred             CccccccCCccccCHHHhcC--CCCCCCcc--ccccc--------------hhhhhhhhcCCCCCCCC-----------C
Confidence            22334689999999999871  23467777  99999              99999988765421000           0


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      ...........+. .....++..             .++.+.+++     .+||+.||++||     +++|+++||||..
T Consensus       212 ~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~li-----~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~  272 (332)
T cd05614         212 ERNTQSEVSRRIL-KCDPPFPSF-------------IGPEAQDLL-----HKLLRKDPKKRLGAGPQGASEIKEHPFFKG  272 (332)
T ss_pred             CCCCHHHHHHHHh-cCCCCCCCC-------------CCHHHHHHH-----HHHcCCCHHHcCCCCCCCHHHHHcCCCcCC
Confidence            0000111111111 122223322             236677888     999999999999     7889999999985


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       273 ~  273 (332)
T cd05614         273 L  273 (332)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.94  E-value=2e-27  Score=232.89  Aligned_cols=154  Identities=27%  Similarity=0.326  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                           
T Consensus       101 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~---------------------------  153 (291)
T cd05612         101 STGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRD---------------------------  153 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccC---------------------------
Confidence            35678999999999999999999999999999999999999999999875421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       .....+||+.|+|||++.   +..++.++  ||||+              ||++|+|++|+.               |+
T Consensus       154 -~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~~l~~g~~---------------pf  198 (291)
T cd05612         154 -RTWTLCGTPEYLAPEVIQ---SKGHNKAV--DWWAL--------------GILIYEMLVGYP---------------PF  198 (291)
T ss_pred             -CcccccCChhhcCHHHHc---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence             122357999999999987   56778888  99999              999999877653               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                      .+.........+. .....+|...             ++.+.++|     ++||+.||.+||+     ++|++.||||..
T Consensus       199 ~~~~~~~~~~~i~-~~~~~~~~~~-------------~~~~~~li-----~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~  259 (291)
T cd05612         199 FDDNPFGIYEKIL-AGKLEFPRHL-------------DLYAKDLI-----KKLLVVDRTRRLGNMKNGADDVKNHRWFKS  259 (291)
T ss_pred             CCCCHHHHHHHHH-hCCcCCCccC-------------CHHHHHHH-----HHHcCCCHHHccCCccCCHHHHhcCccccC
Confidence            3332223333332 2223333332             36677888     9999999999995     999999999975

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0596|consensus

Probab=99.94  E-value=3.2e-27  Score=236.63  Aligned_cols=164  Identities=24%  Similarity=0.322  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.+.+|+|.|++++|++||||.||||.|+|+- .|.+||+|||.|..+...                       ....
T Consensus       461 ~lk~ywkqML~aV~~IH~~gIVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~D-----------------------TTsI  516 (677)
T KOG0596|consen  461 FLKFYWKQMLLAVKTIHQHGIVHSDLKPANFLLV-KGRLKLIDFGIANAIQPD-----------------------TTSI  516 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHhceeecCCCcccEEEE-eeeEEeeeechhcccCcc-----------------------ccce
Confidence            4788999999999999999999999999999997 789999999999876432                       2234


Q ss_pred             CCcCcccccceecccccccc------ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          83 SHTGQVGTALYAAPELDSHG------VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~------~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                      ...+.+||+.||+||.+...      .+..+....++|||||              |||+|+|.-|+++.-+-.      
T Consensus       517 ~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSL--------------GCILYqMvYgktPf~~~~------  576 (677)
T KOG0596|consen  517 VKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSL--------------GCILYQMVYGKTPFGQII------  576 (677)
T ss_pred             eeccccCcccccCHHHHhhccccccCCCcceeecCccchhhh--------------hhHHHHHHhcCCchHHHH------
Confidence            56678999999999998621      1112223344499999              999999766555322211      


Q ss_pred             cCCCCCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                              +....+..+. .+-...||...+  .          .++     |++|+.||.+||++|||..++|+|||..
T Consensus       577 --------n~~aKl~aI~~P~~~Iefp~~~~--~----------~~l-----i~~mK~CL~rdPkkR~si~eLLqhpFl~  631 (677)
T KOG0596|consen  577 --------NQIAKLHAITDPNHEIEFPDIPE--N----------DEL-----IDVMKCCLARDPKKRWSIPELLQHPFLQ  631 (677)
T ss_pred             --------HHHHHHHhhcCCCccccccCCCC--c----------hHH-----HHHHHHHHhcCcccCCCcHHHhcCcccc
Confidence                    0111111111 123345555432  1          113     3555999999999999999999999976

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.94  E-value=3.1e-27  Score=234.96  Aligned_cols=157  Identities=27%  Similarity=0.415  Sum_probs=121.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                         ...
T Consensus        96 ~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~-------------------------~~~  150 (321)
T cd05591          96 PRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGI-------------------------LNG  150 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecc-------------------------cCC
Confidence            3578899999999999999999999999999999999999999999987432                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~el~tg~~---------------Pf  196 (321)
T cd05591         151 VTTTTFCGTPDYIAPEILQ---ELEYGPSV--DWWAL--------------GVLMYEMMAGQP---------------PF  196 (321)
T ss_pred             ccccccccCccccCHHHHc---CCCCCCcc--ceech--------------hHHHHHHhcCCC---------------CC
Confidence            2234567999999999987   66788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-------ChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-------SSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-------ta~e~l~hp~f  234 (454)
                      ...+....+..+.. ....+|...             +....++|     ++||+.||++||       +++++++||||
T Consensus       197 ~~~~~~~~~~~i~~-~~~~~p~~~-------------~~~~~~ll-----~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~  257 (321)
T cd05591         197 EADNEDDLFESILH-DDVLYPVWL-------------SKEAVSIL-----KAFMTKNPNKRLGCVASQGGEDAIKQHPFF  257 (321)
T ss_pred             CCCCHHHHHHHHHc-CCCCCCCCC-------------CHHHHHHH-----HHHhccCHHHcCCCCCCCCCHHHHhcCCcc
Confidence            33333333333332 223334332             26667888     999999999999       89999999999


Q ss_pred             cc
Q psy7309         235 LE  236 (454)
Q Consensus       235 ~~  236 (454)
                      ..
T Consensus       258 ~~  259 (321)
T cd05591         258 KE  259 (321)
T ss_pred             CC
Confidence            64

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.94  E-value=2.3e-27  Score=235.54  Aligned_cols=158  Identities=27%  Similarity=0.406  Sum_probs=120.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...                         ...
T Consensus        96 ~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~-------------------------~~~  150 (316)
T cd05620          96 YRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENV-------------------------FGD  150 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecc-------------------------cCC
Confidence            3578899999999999999999999999999999999999999999986321                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~el~~g~~---------------Pf  196 (316)
T cd05620         151 NRASTFCGTPDYIAPEILQ---GLKYTFSV--DWWSF--------------GVLLYEMLIGQS---------------PF  196 (316)
T ss_pred             CceeccCCCcCccCHHHHc---CCCCCccc--chhhh--------------HHHHHHHHhCCC---------------CC
Confidence            2334568999999999998   67788888  99999              999999776653               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-hhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-EQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-~e~l~hp~f~~~  237 (454)
                      .+.........+. ...+.+|.+             .+..+.++|     ++||+.||++|||+ +++++||||...
T Consensus       197 ~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~li-----~~~l~~dP~~R~~~~~~~~~h~~f~~~  254 (316)
T cd05620         197 HGDDEDELFESIR-VDTPHYPRW-------------ITKESKDIL-----EKLFERDPTRRLGVVGNIRGHPFFKTI  254 (316)
T ss_pred             CCCCHHHHHHHHH-hCCCCCCCC-------------CCHHHHHHH-----HHHccCCHHHcCCChHHHHcCCCcCCC
Confidence            2222222333322 222333333             236677888     99999999999998 588899999764

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.94  E-value=3.8e-27  Score=236.48  Aligned_cols=154  Identities=23%  Similarity=0.287  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....                           
T Consensus       131 ~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~---------------------------  183 (340)
T PTZ00426        131 DVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDT---------------------------  183 (340)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCC---------------------------
Confidence            35788999999999999999999999999999999999999999999874321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       .....+||+.|+|||++.   +..++.++  ||||+              ||++|||++|.+               |+
T Consensus       184 -~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvil~ell~G~~---------------Pf  228 (340)
T PTZ00426        184 -RTYTLCGTPEYIAPEILL---NVGHGKAA--DWWTL--------------GIFIYEILVGCP---------------PF  228 (340)
T ss_pred             -CcceecCChhhcCHHHHh---CCCCCccc--cccch--------------hhHHHHHhcCCC---------------CC
Confidence             123457999999999997   56778888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      ...........+. .....+|...             ++.+.++|     ++||+.||.+|+     |++++++||||..
T Consensus       229 ~~~~~~~~~~~i~-~~~~~~p~~~-------------~~~~~~li-----~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~  289 (340)
T PTZ00426        229 YANEPLLIYQKIL-EGIIYFPKFL-------------DNNCKHLM-----KKLLSHDLTKRYGNLKKGAQNVKEHPWFGN  289 (340)
T ss_pred             CCCCHHHHHHHHh-cCCCCCCCCC-------------CHHHHHHH-----HHHcccCHHHcCCCCCCCHHHHHcCCCcCC
Confidence            3322222233332 2222334332             25667888     999999999995     8999999999975

>KOG0577|consensus

Probab=99.94  E-value=1e-26  Score=233.90  Aligned_cols=196  Identities=24%  Similarity=0.356  Sum_probs=150.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +|-.|+.+.|.||+|||+++.||||||..|||++..|.|||+|||.|....                             
T Consensus       127 EIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~-----------------------------  177 (948)
T KOG0577|consen  127 EIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMA-----------------------------  177 (948)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcC-----------------------------
Confidence            467789999999999999999999999999999999999999999987432                             


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...+++|||+|||||+++.-..+.|+.++  |||||              |++..|+..               ..+|..
T Consensus       178 PAnsFvGTPywMAPEVILAMDEGqYdgkv--DvWSL--------------GITCIELAE---------------RkPPlF  226 (948)
T KOG0577|consen  178 PANSFVGTPYWMAPEVILAMDEGQYDGKV--DVWSL--------------GITCIELAE---------------RKPPLF  226 (948)
T ss_pred             chhcccCCccccchhHheeccccccCCcc--ceeec--------------cchhhhhhh---------------cCCCcc
Confidence            34568999999999998755578899999  99999              999999754               345666


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSGL  242 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~~  242 (454)
                      ..+-...+.-+..+..+.++..    .|+        .....|+     ..||++-|.+|||++++|.|+|.....++. 
T Consensus       227 nMNAMSALYHIAQNesPtLqs~----eWS--------~~F~~Fv-----d~CLqKipqeRptse~ll~H~fv~R~Rp~t-  288 (948)
T KOG0577|consen  227 NMNAMSALYHIAQNESPTLQSN----EWS--------DYFRNFV-----DSCLQKIPQERPTSEELLKHRFVLRERPPT-  288 (948)
T ss_pred             CchHHHHHHHHHhcCCCCCCCc----hhH--------HHHHHHH-----HHHHhhCcccCCcHHHHhhcchhccCCCch-
Confidence            6666666666666777777754    565        5556777     999999999999999999999987544321 


Q ss_pred             CccCccccccCCCCCCCCcchHHHHHHHHHHhcCCCChhHHHHHHHHhCCCCC
Q psy7309         243 SVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVS  295 (454)
Q Consensus       243 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~q~~~  295 (454)
                             ++.        --...-+++++    .-+.-.|++..+.+|.....
T Consensus       289 -------vi~--------dLIqRTKdaVr----ELDNlqYrKMkKilf~e~~n  322 (948)
T KOG0577|consen  289 -------VIM--------DLIQRTKDAVR----ELDNLQYRKMKKILFQEAPN  322 (948)
T ss_pred             -------HHH--------HHHHHHHHHHH----HhhhhhHHHHHHHHhhccCC
Confidence                   000        00112233333    44556788888888865433

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.94  E-value=3.6e-27  Score=236.44  Aligned_cols=180  Identities=29%  Similarity=0.389  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                            
T Consensus       118 ~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~----------------------------  169 (343)
T cd07878         118 EHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQAD----------------------------  169 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecC----------------------------
Confidence            4678999999999999999999999999999999999999999999987432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...++.++  ||||+              ||++|+|++|.+.     ..+.+......
T Consensus       170 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~el~~g~~pf~~~~~~~~~~~~~~~  231 (343)
T cd07878         170 DEMTGYVATRWYRAPEIMLN--WMHYNQTV--DIWSV--------------GCIMAELLKGKALFPGNDYIDQLKRIMEV  231 (343)
T ss_pred             CCcCCccccccccCchHhcC--CccCCchh--hhHhH--------------HHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence            12334578999999999871  25678888  99999              9999997765542     12222222221


Q ss_pred             cCCCCCCchhhh----hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         157 ENGPSTGSNVQK----SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       157 ~~~p~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      .+.+... ....    ....+... ....+.    ..+..... ..++.+.+||     .+||+.||.+|||+.|+|+||
T Consensus       232 ~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~-~~~~~~~~li-----~~mL~~dp~~R~s~~ell~hp  299 (343)
T cd07878         232 VGTPSPE-VLKKISSEHARKYIQS-LPHMPQ----QDLKKIFR-GANPLAIDLL-----EKMLVLDSDKRISASEALAHP  299 (343)
T ss_pred             hCCCCHH-HHHhcchhhHHHHhhc-cccccc----hhHHHhcc-CCCHHHHHHH-----HHHcCCChhhCCCHHHHhcCc
Confidence            2222111 0000    00001000 000010    01111111 1224556777     999999999999999999999


Q ss_pred             ccccCCC
Q psy7309         233 ISLEGSS  239 (454)
Q Consensus       233 ~f~~~~~  239 (454)
                      ||.....
T Consensus       300 ~~~~~~~  306 (343)
T cd07878         300 YFSQYHD  306 (343)
T ss_pred             chhccCC
Confidence            9987544

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>KOG0662|consensus

Probab=99.94  E-value=5.7e-27  Score=205.11  Aligned_cols=182  Identities=25%  Similarity=0.394  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||.|+|++++.||||||.|.|++.+|++|++|||+|+.+.-                         ..
T Consensus       101 ~~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgi-------------------------pv  155 (292)
T KOG0662|consen  101 EIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGI-------------------------PV  155 (292)
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCC-------------------------ce
Confidence            35788999999999999999999999999999999999999999999997642                         12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-Cch-----hhHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRP-----KTLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~-----~~~~~l~~~i~  155 (454)
                      ......+-|..|++|.++.  +..-|+++.  |+||.              ||++.|+.. |+|     ...+++.++++
T Consensus       156 rcysaevvtlwyrppdvlf--gakly~tsi--dmwsa--------------gcifaelanagrplfpg~dvddqlkrif~  217 (292)
T KOG0662|consen  156 RCYSAEVVTLWYRPPDVLF--GAKLYSTSI--DMWSA--------------GCIFAELANAGRPLFPGNDVDDQLKRIFR  217 (292)
T ss_pred             EeeeceeeeeeccCcceee--eeehhccch--Hhhhc--------------chHHHHHhhcCCCCCCCCcHHHHHHHHHH
Confidence            2344568899999999998  356789999  99999              999999543 555     56788888888


Q ss_pred             hcCCCCCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         156 RENGPSTGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       156 ~~~~p~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .++.|..+.+.. ..+..  ....+.+|..   ..|+.+.++.. +...+++     .++|..+|.+|++|+.+|+||||
T Consensus       218 ~lg~p~ed~wps~t~lpd--yk~yp~ypat---tswsqivp~ln-s~grdll-----qkll~cnp~qrisaeaalqhpyf  286 (292)
T KOG0662|consen  218 LLGTPTEDQWPSMTKLPD--YKPYPIYPAT---TSWSQIVPKLN-STGRDLL-----QKLLKCNPAQRISAEAALQHPYF  286 (292)
T ss_pred             HhCCCccccCCccccCCC--CcccCCcccc---chHHHHhhhhc-chhHHHH-----HHHhccCcccccCHHHHhcCccc
Confidence            777776553321 11111  1222333333   56999888776 7788999     99999999999999999999999


Q ss_pred             ccC
Q psy7309         235 LEG  237 (454)
Q Consensus       235 ~~~  237 (454)
                      ...
T Consensus       287 ~d~  289 (292)
T KOG0662|consen  287 SDF  289 (292)
T ss_pred             ccc
Confidence            853

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=2.8e-27  Score=245.95  Aligned_cols=185  Identities=21%  Similarity=0.290  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       260 ~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~-----------------------~~~  316 (461)
T PHA03211        260 AQVTAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGS-----------------------WST  316 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccc-----------------------ccc
Confidence            467899999999999999999999999999999999999999999999754210                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch------------hhHHH
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP------------KTLEE  149 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~------------~~~~~  149 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              ||++||++.+..            ....+
T Consensus       317 ~~~~~~~GT~~Y~APE~~~---~~~~~~~s--DvwSl--------------GviL~El~~g~~~lf~~~~~~~~~~~~~~  377 (461)
T PHA03211        317 PFHYGIAGTVDTNAPEVLA---GDPYTPSV--DIWSA--------------GLVIFEAAVHTASLFSASRGDERRPYDAQ  377 (461)
T ss_pred             ccccccCCCcCCcCHHHHc---CCCCCchH--HHHHH--------------HHHHHHHHHcCCCcccCCcccccCCcHHH
Confidence            1223467999999999997   66788888  99999              999998643221            12233


Q ss_pred             HHHHhhhcCCC---CCCchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh
Q psy7309         150 LKHNIRRENGP---STGSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS  225 (454)
Q Consensus       150 l~~~i~~~~~p---~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta  225 (454)
                      +.+.+......   +...........+... .....+. .....|....  ..+....+||     .+||+.||++|||+
T Consensus       378 l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~dli-----~~mL~~DP~~RPsa  449 (461)
T PHA03211        378 ILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARNRRPA-YTRPAWTRYY--KLDLDVEYLV-----CRALTFDGARRPSA  449 (461)
T ss_pred             HHHHHHhhccccccCCCCcchHHHHHHHhhhhcccCCc-cCCcchhhhc--cccchHHHHH-----HHHcccChhhCcCH
Confidence            33333322111   1111111111111100 0000111 1112233221  1235677888     99999999999999


Q ss_pred             hhhhcCccccc
Q psy7309         226 EQNLCQPISLE  236 (454)
Q Consensus       226 ~e~l~hp~f~~  236 (454)
                      .|+|+||||+.
T Consensus       450 ~elL~hp~f~~  460 (461)
T PHA03211        450 AELLRLPLFQS  460 (461)
T ss_pred             HHHhhCcccCC
Confidence            99999999973

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.94  E-value=6.4e-27  Score=232.99  Aligned_cols=157  Identities=32%  Similarity=0.436  Sum_probs=120.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                         ...
T Consensus       101 ~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------------------------~~~  155 (323)
T cd05584         101 TACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIH-------------------------EGT  155 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeeccc-------------------------CCC
Confidence            5677899999999999999999999999999999999999999999874321                         112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......||+.|+|||++.   +..++.++  ||||+              ||++|||++|++               |+.
T Consensus       156 ~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~G~~---------------pf~  201 (323)
T cd05584         156 VTHTFCGTIEYMAPEILM---RSGHGKAV--DWWSL--------------GALMYDMLTGAP---------------PFT  201 (323)
T ss_pred             cccccCCCccccChhhcc---CCCCCCcc--eeccc--------------HHHHHHHhcCCC---------------CCC
Confidence            233457999999999998   56678888  99999              999999877654               333


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCcccccC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLEG  237 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~~  237 (454)
                      .......+..+... ...+|...             ++.+.++|     ++||+.||++||     ++++++.||||...
T Consensus       202 ~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~li-----~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~  262 (323)
T cd05584         202 AENRKKTIDKILKG-KLNLPPYL-------------TPEARDLL-----KKLLKRNPSSRLGAGPGDAAEVQSHPFFRHV  262 (323)
T ss_pred             CCCHHHHHHHHHcC-CCCCCCCC-------------CHHHHHHH-----HHHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence            33333333333322 22333332             26677888     999999999999     89999999999864

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.94  E-value=4.5e-27  Score=233.98  Aligned_cols=157  Identities=27%  Similarity=0.340  Sum_probs=121.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...                         ...
T Consensus       101 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~-------------------------~~~  155 (323)
T cd05616         101 PHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENM-------------------------WDG  155 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecC-------------------------CCC
Confidence            3678899999999999999999999999999999999999999999987431                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       156 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvil~elltg~~---------------Pf  201 (323)
T cd05616         156 VTTKTFCGTPDYIAPEIIA---YQPYGKSV--DWWAF--------------GVLLYEMLAGQA---------------PF  201 (323)
T ss_pred             CccccCCCChhhcCHHHhc---CCCCCCcc--chhch--------------hHHHHHHHhCCC---------------CC
Confidence            2234567999999999998   67788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~  236 (454)
                      .+.........+. .....+|...             +..+.+++     .+||+.||.+|+++     .++++||||..
T Consensus       202 ~~~~~~~~~~~i~-~~~~~~p~~~-------------s~~~~~li-----~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~  262 (323)
T cd05616         202 EGEDEDELFQSIM-EHNVAYPKSM-------------SKEAVAIC-----KGLMTKHPGKRLGCGPEGERDIKEHAFFRY  262 (323)
T ss_pred             CCCCHHHHHHHHH-hCCCCCCCcC-------------CHHHHHHH-----HHHcccCHHhcCCCCCCCHHHHhcCCCcCC
Confidence            3333333333333 2223334332             26677888     99999999999985     89999999975

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.94  E-value=4.1e-27  Score=240.78  Aligned_cols=184  Identities=25%  Similarity=0.332  Sum_probs=124.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       185 ~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~-----------------------~~~  241 (392)
T PHA03207        185 EQAITIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAH-----------------------PDT  241 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCcc-----------------------ccc
Confidence            468899999999999999999999999999999999999999999999754321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh--------hHHHHHHH
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK--------TLEELKHN  153 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~--------~~~~l~~~  153 (454)
                      ......+||+.|+|||++.   ...|+.++  ||||+              ||++|||++|+.+        ....+...
T Consensus       242 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dvwsl--------------Gvil~el~~g~~pf~~~~~~~~~~~l~~i  302 (392)
T PHA03207        242 PQCYGWSGTLETNSPELLA---LDPYCAKT--DIWSA--------------GLVLFEMSVKNVTLFGKQVKSSSSQLRSI  302 (392)
T ss_pred             ccccccccccCccCHhHhc---CCCCCchh--hHHHH--------------HHHHHHHHHCCCCCCCCCCCCcHHHHHHH
Confidence            2233568999999999998   66788888  99999              9999997654431        12233333


Q ss_pred             hhhcCCCC---CCch---hhhhhhhhccCCCC--CCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh
Q psy7309         154 IRRENGPS---TGSN---VQKSLQKFQKSPPS--VYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS  225 (454)
Q Consensus       154 i~~~~~p~---~~~~---~~~~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta  225 (454)
                      +.......   ....   ....+..+......  ..|..        +.......++.++|     ++||..||.+||||
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~li-----~~ml~~dp~~Rpsa  369 (392)
T PHA03207        303 IRCMQVHPLEFPQNGSTNLCKHFKQYAIVLRPPYTIPPV--------IRKYGMHMDVEYLI-----AKMLTFDQEFRPSA  369 (392)
T ss_pred             HHHhccCccccCCccchhHHHHHHhhcccccCCccccch--------hhccCcchhHHHHH-----HHHhccChhhCCCH
Confidence            32221111   1111   11111111111111  11111        11112235566777     99999999999999


Q ss_pred             hhhhcCcccccCCCC
Q psy7309         226 EQNLCQPISLEGSSS  240 (454)
Q Consensus       226 ~e~l~hp~f~~~~~~  240 (454)
                      .|+|.||||.+....
T Consensus       370 ~e~l~~p~f~~~~~~  384 (392)
T PHA03207        370 QDILSLPLFTKEPIN  384 (392)
T ss_pred             HHHhhCchhhccchh
Confidence            999999999875543

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.94  E-value=6.9e-27  Score=232.87  Aligned_cols=167  Identities=26%  Similarity=0.374  Sum_probs=124.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                         ...
T Consensus        97 ~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~-------------------------~~~  151 (325)
T cd05602          97 RARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIE-------------------------HNG  151 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCccccc-------------------------CCC
Confidence            5678999999999999999999999999999999999999999999874321                         112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      .....+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|.+               |+.
T Consensus       152 ~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~g~~---------------pf~  197 (325)
T cd05602         152 TTSTFCGTPEYLAPEVLH---KQPYDRTV--DWWCL--------------GAVLYEMLYGLP---------------PFY  197 (325)
T ss_pred             CcccccCCccccCHHHHc---CCCCCCcc--ccccc--------------cHHHHHHhcCCC---------------CCC
Confidence            234567999999999998   67788888  99999              999999877654               333


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh----hhhcCcccccCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE----QNLCQPISLEGS  238 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~----e~l~hp~f~~~~  238 (454)
                      ..........+... ...++..             .++.+.++|     .+||+.||.+|+++.    ++++|+||..  
T Consensus       198 ~~~~~~~~~~i~~~-~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~R~~~~~~~~~i~~~~~~~~--  256 (325)
T cd05602         198 SRNTAEMYDNILNK-PLQLKPN-------------ITNSARHLL-----EGLLQKDRTKRLGAKDDFMEIKNHIFFSP--  256 (325)
T ss_pred             CCCHHHHHHHHHhC-CcCCCCC-------------CCHHHHHHH-----HHHcccCHHHCCCCCCCHHHHhcCcccCC--
Confidence            33333333333222 1222222             226677888     999999999999987    8899999964  


Q ss_pred             CCCCCccCccccccCCC
Q psy7309         239 SSGLSVLGSEQLLTCDH  255 (454)
Q Consensus       239 ~~~~~~~~~~~ll~~~~  255 (454)
                            ++|+++.....
T Consensus       257 ------~~~~~~~~~~~  267 (325)
T cd05602         257 ------INWDDLINKKI  267 (325)
T ss_pred             ------CCHHHHHhCCC
Confidence                  44555554333

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.93  E-value=5.6e-27  Score=231.84  Aligned_cols=182  Identities=25%  Similarity=0.333  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE----ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI----DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl----~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .++.++.||+.||+|||++||+||||||+|||+    +.++.+||+|||+|+......                      
T Consensus       109 ~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~----------------------  166 (317)
T cd07867         109 MVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPL----------------------  166 (317)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCc----------------------
Confidence            478999999999999999999999999999999    456789999999998543210                      


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh------------
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT------------  146 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~------------  146 (454)
                      .........+||+.|+|||++..  ...++.++  ||||+              ||++|||++|.+..            
T Consensus       167 ~~~~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--DiwSl--------------G~il~el~tg~~~f~~~~~~~~~~~~  228 (317)
T cd07867         167 KPLADLDPVVVTFWYRAPELLLG--ARHYTKAI--DIWAI--------------GCIFAELLTSEPIFHCRQEDIKTSNP  228 (317)
T ss_pred             ccccccCcceecccccCcHHhcC--CCccCcHH--HHHhH--------------HHHHHHHHhCCCCccccccccccccc
Confidence            11122345688999999999871  34578888  99999              99999877765522            


Q ss_pred             --HHHHHHHhhhcCCCCCCchhhhhhh---------hhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhc
Q psy7309         147 --LEELKHNIRRENGPSTGSNVQKSLQ---------KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCL  215 (454)
Q Consensus       147 --~~~l~~~i~~~~~p~~~~~~~~~~~---------~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L  215 (454)
                        ..++...+...+.|. ...+.....         .+.. .....+..   ...........+....+++     .+||
T Consensus       229 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~ll-----~~~l  298 (317)
T cd07867         229 FHHDQLDRIFSVMGFPA-DKDWEDIRKMPEYPTLQKDFRR-TTYANSSL---IKYMEKHKVKPDSKVFLLL-----QKLL  298 (317)
T ss_pred             ccHHHHHHHHHhcCCCC-hhhhhhhhhcccchhhhhhhcc-cccCCchh---hhhhhcccCCCChHHHHHH-----HHHh
Confidence              122222222222221 111111100         0000 00000000   0000000011224455666     9999


Q ss_pred             CCCCCCCCChhhhhcCccc
Q psy7309         216 NHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       216 ~~dP~~Rpta~e~l~hp~f  234 (454)
                      +.||.+|||++|+|+||||
T Consensus       299 ~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         299 TMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             ccCcccccCHHHHhcCCCC
Confidence            9999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.93  E-value=5.7e-27  Score=233.33  Aligned_cols=158  Identities=25%  Similarity=0.370  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                         ...
T Consensus       101 ~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~-------------------------~~~  155 (324)
T cd05589         101 PRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGM-------------------------GFG  155 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCC-------------------------CCC
Confidence            4678899999999999999999999999999999999999999999986421                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.               |+
T Consensus       156 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~G~~---------------pf  201 (324)
T cd05589         156 DRTSTFCGTPEFLAPEVLT---ETSYTRAV--DWWGL--------------GVLIYEMLVGES---------------PF  201 (324)
T ss_pred             CcccccccCccccCHhHhc---CCCCCccc--chhhH--------------HHHHHHHHhCCC---------------CC
Confidence            2234568999999999998   66788888  99999              999999776654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      .+.........+... ...+|...             ++...++|     ++||+.||.+||     ++.++++||||..
T Consensus       202 ~~~~~~~~~~~i~~~-~~~~p~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~  262 (324)
T cd05589         202 PGDDEEEVFDSIVND-EVRYPRFL-------------SREAISIM-----RRLLRRNPERRLGSGEKDAEDVKKQPFFRD  262 (324)
T ss_pred             CCCCHHHHHHHHHhC-CCCCCCCC-------------CHHHHHHH-----HHHhhcCHhHcCCCCCCCHHHHhhCCCcCC
Confidence            333333333333322 22333332             25566788     999999999999     6899999999975


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       263 ~  263 (324)
T cd05589         263 I  263 (324)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.93  E-value=5.4e-27  Score=233.51  Aligned_cols=158  Identities=28%  Similarity=0.346  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                         ...
T Consensus       101 ~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~-------------------------~~~  155 (324)
T cd05587         101 PHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENI-------------------------FGG  155 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecC-------------------------CCC
Confidence            3578899999999999999999999999999999999999999999986321                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.               |+
T Consensus       156 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~elltG~~---------------pf  201 (324)
T cd05587         156 KTTRTFCGTPDYIAPEIIA---YQPYGKSV--DWWAF--------------GVLLYEMLAGQP---------------PF  201 (324)
T ss_pred             CceeeecCCccccChhhhc---CCCCCccc--chhhh--------------HHHHHHHHhCCC---------------CC
Confidence            2234567999999999998   66788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~  236 (454)
                      .+.........+. .....+|...             ++.+.+++     ++||..||.+|+++     +++++||||..
T Consensus       202 ~~~~~~~~~~~i~-~~~~~~~~~~-------------~~~~~~li-----~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~  262 (324)
T cd05587         202 DGEDEDELFQSIM-EHNVSYPKSL-------------SKEAVSIC-----KGLLTKHPAKRLGCGPTGERDIREHAFFRR  262 (324)
T ss_pred             CCCCHHHHHHHHH-cCCCCCCCCC-------------CHHHHHHH-----HHHhhcCHHHcCCCCCCCHHHHhcCCCcCC
Confidence            3333333333333 2223334332             26667888     99999999999987     89999999975


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       263 ~  263 (324)
T cd05587         263 I  263 (324)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG0032|consensus

Probab=99.93  E-value=9.1e-27  Score=235.09  Aligned_cols=162  Identities=28%  Similarity=0.390  Sum_probs=129.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC----CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE----DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~----~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+..+++|++.|++|||+.||+||||||+|+|+...    +.+|++|||+|....                         
T Consensus       136 da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~-------------------------  190 (382)
T KOG0032|consen  136 DAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK-------------------------  190 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc-------------------------
Confidence            578899999999999999999999999999999754    369999999998653                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                       ........+||+.|+|||++.   ...|+..+  ||||+              |+++|.|+.|.+              
T Consensus       191 -~~~~~~~~~Gtp~y~APEvl~---~~~y~~~~--DiWS~--------------Gvi~yiLL~G~~--------------  236 (382)
T KOG0032|consen  191 -PGERLHTIVGTPEYVAPEVLG---GRPYGDEV--DVWSI--------------GVILYILLSGVP--------------  236 (382)
T ss_pred             -CCceEeeecCCccccCchhhc---CCCCCccc--chhHH--------------HHHHHHHhhCCC--------------
Confidence             244567789999999999998   68999999  99999              999998765543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       ||.+.........+... ...++..    .|..     .+..+++++     +.||..||.+|+||.++|+|||+....
T Consensus       237 -PF~~~~~~~~~~~i~~~-~~~f~~~----~w~~-----is~~akd~i-----~~ll~~dp~~R~ta~~~L~HpWi~~~~  300 (382)
T KOG0032|consen  237 -PFWGETEFEIFLAILRG-DFDFTSE----PWDD-----ISESAKDFI-----RKLLEFDPRKRLTAAQALQHPWIKSIG  300 (382)
T ss_pred             -CCcCCChhHHHHHHHcC-CCCCCCC----Cccc-----cCHHHHHHH-----HHhcccCcccCCCHHHHhcCccccCCc
Confidence             55555544444444433 2333332    3543     357888999     999999999999999999999998764


Q ss_pred             C
Q psy7309         239 S  239 (454)
Q Consensus       239 ~  239 (454)
                      .
T Consensus       301 ~  301 (382)
T KOG0032|consen  301 E  301 (382)
T ss_pred             c
Confidence            3

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.93  E-value=6e-27  Score=232.52  Aligned_cols=158  Identities=28%  Similarity=0.412  Sum_probs=120.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|.....                         ..
T Consensus        96 ~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~-------------------------~~  150 (316)
T cd05592          96 ARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMN-------------------------GE  150 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCC-------------------------CC
Confidence            35788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~ell~G~~---------------Pf  196 (316)
T cd05592         151 GKASTFCGTPDYIAPEILK---GQKYNESV--DWWSF--------------GVLLYEMLIGQS---------------PF  196 (316)
T ss_pred             CccccccCCccccCHHHHc---CCCCCCcc--cchhH--------------HHHHHHHHhCCC---------------CC
Confidence            2334568999999999998   66788888  99999              999999776653               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-hhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-EQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-~e~l~hp~f~~~  237 (454)
                      .+.+.......+. ...+.+|...             +....++|     .+||+.||++||++ .+++.||||...
T Consensus       197 ~~~~~~~~~~~i~-~~~~~~~~~~-------------~~~~~~ll-----~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05592         197 HGEDEDELFDSIL-NDRPHFPRWI-------------SKEAKDCL-----SKLFERDPTKRLGVDGDIRQHPFFRGI  254 (316)
T ss_pred             CCCCHHHHHHHHH-cCCCCCCCCC-------------CHHHHHHH-----HHHccCCHHHcCCChHHHHcCcccCCC
Confidence            3333333333332 2223333332             25667888     99999999999986 588899999753

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.93  E-value=7.5e-27  Score=233.15  Aligned_cols=166  Identities=25%  Similarity=0.291  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++...                         ...
T Consensus        96 ~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~-------------------------~~~  150 (329)
T cd05588          96 EHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGI-------------------------RPG  150 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccc-------------------------cCC
Confidence            4678899999999999999999999999999999999999999999987421                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  |+||+              ||++|++++|+.+....     .....| 
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~~l~el~~g~~Pf~~~-----~~~~~~-  205 (329)
T cd05588         151 DTTSTFCGTPNYIAPEILR---GEDYGFSV--DWWAL--------------GVLMFEMMAGRSPFDIV-----GMSDNP-  205 (329)
T ss_pred             CccccccCCccccCHHHHc---CCCCCCcc--ceech--------------HHHHHHHHHCCCCcccc-----cccccc-
Confidence            2233468999999999998   67788888  99999              99999977765432100     000000 


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC------hhhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS------SEQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt------a~e~l~hp~f~  235 (454)
                       ..................+|...             +..+.++|     ++||+.||.+|+|      ++|+++||||.
T Consensus       206 -~~~~~~~~~~~~~~~~~~~p~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~  266 (329)
T cd05588         206 -DQNTEDYLFQVILEKQIRIPRSL-------------SVKASSVL-----KGFLNKDPKERLGCHPQTGFRDIKSHPFFR  266 (329)
T ss_pred             -cccchHHHHHHHHcCCCCCCCCC-------------CHHHHHHH-----HHHhccCHHHcCCCCCCCCHHHHhcCCCCC
Confidence             11111111111112333344332             26677888     9999999999997      68999999996


Q ss_pred             c
Q psy7309         236 E  236 (454)
Q Consensus       236 ~  236 (454)
                      .
T Consensus       267 ~  267 (329)
T cd05588         267 N  267 (329)
T ss_pred             C
Confidence            4

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>KOG0983|consensus

Probab=99.93  E-value=1.7e-26  Score=213.97  Aligned_cols=159  Identities=28%  Similarity=0.417  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           5 WRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         5 ~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      -++...++.||.||.+ +||||||+||+|||+|..|++||||||.+..+.+                          ...
T Consensus       194 Gk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvd--------------------------SkA  247 (391)
T KOG0983|consen  194 GKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVD--------------------------SKA  247 (391)
T ss_pred             hhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeec--------------------------ccc
Confidence            3567788999999985 6999999999999999999999999999987643                          345


Q ss_pred             CcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCC
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTG  163 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~  163 (454)
                      ++...|.+.|||||-+--.....|+-.+  |||||              |++++|+.+|+.               |+.+
T Consensus       248 htrsAGC~~YMaPERidp~~~~kYDiRa--DVWSl--------------GITlveLaTg~y---------------Py~~  296 (391)
T KOG0983|consen  248 HTRSAGCAAYMAPERIDPPDKPKYDIRA--DVWSL--------------GITLVELATGQY---------------PYKG  296 (391)
T ss_pred             cccccCCccccCccccCCCCCCccchhh--hhhhh--------------ccchhhhhcccC---------------CCCC
Confidence            6667899999999999755577899898  99999              999999988764               3333


Q ss_pred             c-hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         164 S-NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       164 ~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      . ...+.+-++.+..++.+|....           .++...+|+     ..||.+|+.+||...++|+|||...
T Consensus       297 c~tdFe~ltkvln~ePP~L~~~~g-----------FSp~F~~fv-----~~CL~kd~r~RP~Y~~Ll~h~Fi~~  354 (391)
T KOG0983|consen  297 CKTDFEVLTKVLNEEPPLLPGHMG-----------FSPDFQSFV-----KDCLTKDHRKRPKYNKLLEHPFIKR  354 (391)
T ss_pred             CCccHHHHHHHHhcCCCCCCcccC-----------cCHHHHHHH-----HHHhhcCcccCcchHHHhcCcceee
Confidence            2 2334445555566666666532           237777888     9999999999999999999999874

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.93  E-value=1.4e-26  Score=230.70  Aligned_cols=158  Identities=28%  Similarity=0.362  Sum_probs=119.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                         ...
T Consensus        96 ~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~-------------------------~~~  150 (325)
T cd05604          96 PRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGI-------------------------AQS  150 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCC-------------------------CCC
Confidence            3578899999999999999999999999999999999999999999987421                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~el~~G~~---------------pf  196 (325)
T cd05604         151 DTTTTFCGTPEYLAPEVIR---KQPYDNTV--DWWCL--------------GAVLYEMLYGLP---------------PF  196 (325)
T ss_pred             CCcccccCChhhCCHHHHc---CCCCCCcC--ccccc--------------cceehhhhcCCC---------------CC
Confidence            2234568999999999998   67788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh----hhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE----QNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~----e~l~hp~f~~~  237 (454)
                      ...........+.... ..++..             .+....++|     ++||+.||.+||++.    ++++||||...
T Consensus       197 ~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~~ll-----~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~  257 (325)
T cd05604         197 YCRDVAEMYDNILHKP-LVLRPG-------------ASLTAWSIL-----EELLEKDRQRRLGAKEDFLEIQEHPFFESL  257 (325)
T ss_pred             CCCCHHHHHHHHHcCC-ccCCCC-------------CCHHHHHHH-----HHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence            3333333333333221 122211             125566788     999999999999874    89999999753

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.93  E-value=8.6e-27  Score=232.76  Aligned_cols=165  Identities=25%  Similarity=0.289  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                         ..
T Consensus        96 ~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~-------------------------~~  150 (329)
T cd05618          96 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLR-------------------------PG  150 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccC-------------------------CC
Confidence            35788999999999999999999999999999999999999999999874311                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.+....     .  ....
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~g~~Pf~~~-----~--~~~~  204 (329)
T cd05618         151 DTTSTFCGTPNYIAPEILR---GEDYGFSV--DWWAL--------------GVLMFEMMAGRSPFDIV-----G--SSDN  204 (329)
T ss_pred             CccccccCCccccCHHHHc---CCCCCCcc--ceecc--------------cHHHHHHhhCCCCCccC-----C--CcCC
Confidence            2234468999999999998   67788888  99999              99999987765432100     0  0000


Q ss_pred             CCchhhh-hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh------hhhhcCccc
Q psy7309         162 TGSNVQK-SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS------EQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta------~e~l~hp~f  234 (454)
                      ....... ....+. .....+|...             +..+.++|     ++||+.||++|||+      +++++||||
T Consensus       205 ~~~~~~~~~~~~i~-~~~~~~p~~~-------------~~~~~~ll-----~~~L~~dP~~R~~~~~~~~~~~i~~hp~f  265 (329)
T cd05618         205 PDQNTEDYLFQVIL-EKQIRIPRSL-------------SVKAASVL-----KSFLNKDPKERLGCHPQTGFADIQGHPFF  265 (329)
T ss_pred             cccccHHHHHHHHh-cCCCCCCCCC-------------CHHHHHHH-----HHHhcCCHHHcCCCCCCCCHHHHhcCCCC
Confidence            0011111 111121 2333344332             25667888     99999999999995      799999999


Q ss_pred             cc
Q psy7309         235 LE  236 (454)
Q Consensus       235 ~~  236 (454)
                      ..
T Consensus       266 ~~  267 (329)
T cd05618         266 RN  267 (329)
T ss_pred             CC
Confidence            75

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.93  E-value=1.7e-26  Score=229.51  Aligned_cols=157  Identities=25%  Similarity=0.335  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus        96 ~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~-------------------------~~  150 (321)
T cd05603          96 PRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVE-------------------------PE  150 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCC-------------------------CC
Confidence            35788999999999999999999999999999999999999999999874211                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~g~~---------------pf  196 (321)
T cd05603         151 ETTSTFCGTPEYLAPEVLR---KEPYDRTV--DWWCL--------------GAVLYEMLYGLP---------------PF  196 (321)
T ss_pred             CccccccCCcccCCHHHhc---CCCCCCcC--ccccc--------------chhhhhhhcCCC---------------CC
Confidence            2234467999999999987   66788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh----hhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE----QNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~----e~l~hp~f~~  236 (454)
                      ...+.......+.. ....+|..             .+....++|     .+||+.||.+|+++.    |+++|+||..
T Consensus       197 ~~~~~~~~~~~i~~-~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~R~~~~~~~~~~~~~~~~~~  256 (321)
T cd05603         197 YSRDVSQMYDNILH-KPLQLPGG-------------KTVAACDLL-----VGLLHKDQRRRLGAKADFLEIKNHVFFSP  256 (321)
T ss_pred             CCCCHHHHHHHHhc-CCCCCCCC-------------CCHHHHHHH-----HHHccCCHhhcCCCCCCHHHHhCCCCcCC
Confidence            33333333333332 22233322             125667788     999999999999864    9999999974

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.93  E-value=6.7e-27  Score=246.41  Aligned_cols=184  Identities=20%  Similarity=0.253  Sum_probs=121.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ++++++.||+.||+|||++|||||||||+|||++.++.+||+|||+++.+..                        ....
T Consensus       268 ~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~------------------------~~~~  323 (501)
T PHA03210        268 QTRAIMKQLLCAVEYIHDKKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEK------------------------EREA  323 (501)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEeCCCceecCc------------------------cccc
Confidence            5678999999999999999999999999999999999999999999975531                        1112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch--------hhHHHHHHHh
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP--------KTLEELKHNI  154 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~--------~~~~~l~~~i  154 (454)
                      .....+||+.|+|||++.   +..|+.++  ||||+              ||++|||+++..        ....++...+
T Consensus       324 ~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvil~ell~~~~~p~~~~~~~~~~~~~~~~  384 (501)
T PHA03210        324 FDYGWVGTVATNSPEILA---GDGYCEIT--DIWSC--------------GLILLDMLSHDFCPIGDGGGKPGKQLLKII  384 (501)
T ss_pred             ccccccCCcCCCCchhhc---CCCCCcHH--HHHHH--------------HHHHHHHHHCCCCCccCCCCCHHHHHHHHH
Confidence            233468999999999998   66788888  99999              999999765432        2233343333


Q ss_pred             hhcCCCCCCc--hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         155 RRENGPSTGS--NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       155 ~~~~~p~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      .....+....  ...+.+..+........+...+    +.+..........++|     .+||++||++||||.|+|.||
T Consensus       385 ~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~~~li-----~kmL~~DP~~Rpsa~elL~hp  455 (501)
T PHA03210        385 DSLSVCDEEFPDPPCKLFDYIDSAEIDHAGHSVP----PLIRNLGLPADFEYPL-----VKMLTFDWHLRPGAAELLALP  455 (501)
T ss_pred             HhcccChhhcCCcHHHHHHHhhhhhcccCccchh----hHHHhcCCChHHHHHH-----HHHhccCcccCcCHHHHhhCh
Confidence            3222111110  0011111111100000011100    0001111224556667     999999999999999999999


Q ss_pred             ccccCC
Q psy7309         233 ISLEGS  238 (454)
Q Consensus       233 ~f~~~~  238 (454)
                      ||....
T Consensus       456 ~f~~~~  461 (501)
T PHA03210        456 LFSAEE  461 (501)
T ss_pred             hhhcCC
Confidence            998643

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.93  E-value=6.3e-27  Score=232.50  Aligned_cols=158  Identities=30%  Similarity=0.436  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                         ...
T Consensus        96 ~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~-------------------------~~~  150 (318)
T cd05570          96 PRARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGI-------------------------LGG  150 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecC-------------------------cCC
Confidence            4678899999999999999999999999999999999999999999986421                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  |+||+              ||++|+|++|..               |+
T Consensus       151 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~~l~~G~~---------------pf  196 (318)
T cd05570         151 VTTSTFCGTPDYIAPEILS---YQPYGPAV--DWWAL--------------GVLLYEMLAGQS---------------PF  196 (318)
T ss_pred             CcccceecCccccCHHHhc---CCCCCcch--hhhhH--------------HHHHHHHhhCCC---------------CC
Confidence            2233457999999999998   67788888  99999              999999777654               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~  236 (454)
                      ...........+. .....+|...             +....++|     ++||+.||++|||+     .+++.||||..
T Consensus       197 ~~~~~~~~~~~i~-~~~~~~~~~~-------------~~~~~~li-----~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~  257 (318)
T cd05570         197 EGDDEDELFQSIL-EDEVRYPRWL-------------SKEAKSIL-----KSFLTKNPEKRLGCLPTGEQDIKGHPFFRE  257 (318)
T ss_pred             CCCCHHHHHHHHH-cCCCCCCCcC-------------CHHHHHHH-----HHHccCCHHHcCCCCCCCHHHHhcCCCcCC
Confidence            2222222222222 2222333322             26667888     99999999999999     99999999976


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       258 ~  258 (318)
T cd05570         258 I  258 (318)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.93  E-value=7.8e-27  Score=227.40  Aligned_cols=157  Identities=29%  Similarity=0.409  Sum_probs=117.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus        97 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~-------------------------~~  151 (280)
T cd05608          97 PRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKD-------------------------GQ  151 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCC-------------------------CC
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  |+||+              ||++||+++|+.+               +
T Consensus       152 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~el~~g~~p---------------f  197 (280)
T cd05608         152 SKTKGYAGTPGFMAPELLQ---GEEYDFSV--DYFAL--------------GVTLYEMIAARGP---------------F  197 (280)
T ss_pred             ccccccCCCcCccCHHHhc---CCCCCccc--cHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1233457899999999998   66788888  99999              9999997766532               1


Q ss_pred             CCch----hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCc
Q psy7309         162 TGSN----VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQP  232 (454)
Q Consensus       162 ~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp  232 (454)
                      ....    ......... .....++..             .++...+++     .+||+.||++||     |++++++||
T Consensus       198 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~li-----~~~l~~~P~~R~~~~~~~~~~~l~h~  258 (280)
T cd05608         198 RARGEKVENKELKQRIL-NDSVTYPDK-------------FSPASKSFC-----EALLAKDPEKRLGFRDGNCDGLRTHP  258 (280)
T ss_pred             CCCCcchhHHHHHHhhc-ccCCCCccc-------------CCHHHHHHH-----HHHhcCCHHHhcCCCCCCHHHHhcCh
Confidence            1110    011111111 112222222             236677888     999999999999     889999999


Q ss_pred             cccc
Q psy7309         233 ISLE  236 (454)
Q Consensus       233 ~f~~  236 (454)
                      ||+.
T Consensus       259 ~~~~  262 (280)
T cd05608         259 LFRD  262 (280)
T ss_pred             hhhc
Confidence            9985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.93  E-value=6.8e-27  Score=232.21  Aligned_cols=158  Identities=29%  Similarity=0.417  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++....                         ...
T Consensus        96 ~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~-------------------------~~~  150 (316)
T cd05619          96 PRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENM-------------------------LGD  150 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECC-------------------------CCC
Confidence            4678899999999999999999999999999999999999999999987421                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  |+||+              ||++|||++|..               |+
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~el~~G~~---------------pf  196 (316)
T cd05619         151 AKTCTFCGTPDYIAPEILL---GQKYNTSV--DWWSF--------------GVLLYEMLIGQS---------------PF  196 (316)
T ss_pred             CceeeecCCccccCHHHHc---CCCCCchh--hhhhH--------------HHHHHHHHhCCC---------------CC
Confidence            2233467999999999987   66788888  99999              999999877653               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh-hhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE-QNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~-e~l~hp~f~~~  237 (454)
                      ...........+.. ....+|...             +....+++     .+||+.||++||++. ++++||||...
T Consensus       197 ~~~~~~~~~~~i~~-~~~~~~~~~-------------~~~~~~li-----~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05619         197 HGHDEEELFQSIRM-DNPCYPRWL-------------TREAKDIL-----VKLFVREPERRLGVKGDIRQHPFFREI  254 (316)
T ss_pred             CCCCHHHHHHHHHh-CCCCCCccC-------------CHHHHHHH-----HHHhccCHhhcCCChHHHHcCcccCCC
Confidence            33333333333321 222333332             25667888     999999999999996 89999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.93  E-value=2.2e-26  Score=228.41  Aligned_cols=157  Identities=28%  Similarity=0.407  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus        98 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~-------------------------~~  152 (318)
T cd05582          98 EDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID-------------------------HE  152 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCC-------------------------CC
Confidence            46789999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.               |+
T Consensus       153 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~tg~~---------------p~  198 (318)
T cd05582         153 KKAYSFCGTVEYMAPEVVN---RRGHTQSA--DWWSF--------------GVLMFEMLTGSL---------------PF  198 (318)
T ss_pred             CceecccCChhhcCHHHHc---CCCCCCcc--ceecc--------------ceEeeeeccCCC---------------CC
Confidence            2234568999999999987   56678888  99999              999999887654               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                      ...........+. .....+|...             ++...++|     ++||+.||.+|||     +++++.||||..
T Consensus       199 ~~~~~~~~~~~i~-~~~~~~p~~~-------------~~~~~~li-----~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~  259 (318)
T cd05582         199 QGKDRKETMTMIL-KAKLGMPQFL-------------SPEAQSLL-----RALFKRNPANRLGAGPDGVEEIKRHPFFST  259 (318)
T ss_pred             CCCCHHHHHHHHH-cCCCCCCCCC-------------CHHHHHHH-----HHHhhcCHhHcCCCCCCCHHHHhCCCCcCC
Confidence            2222222222222 1222333322             26677888     9999999999999     566999999985

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.93  E-value=2.2e-26  Score=232.57  Aligned_cols=184  Identities=27%  Similarity=0.369  Sum_probs=121.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCcccccc-----CccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT-----GYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~-----~~~~~~~~~~~   76 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++................     +..........
T Consensus       101 ~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (360)
T cd05627         101 EATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKR  180 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCccccccccccccc
Confidence            3578899999999999999999999999999999999999999999987543211100000000     00000000000


Q ss_pred             -----cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHH
Q psy7309          77 -----FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELK  151 (454)
Q Consensus        77 -----~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~  151 (454)
                           ...........+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+       
T Consensus       181 ~~~~~~~~~~~~~~~~~gt~~Y~APE~~~---~~~~~~~~--DiwSl--------------Gvilyel~tG~~-------  234 (360)
T cd05627         181 KAETWKKNRRQLAYSTVGTPDYIAPEVFM---QTGYNKLC--DWWSL--------------GVIMYEMLIGYP-------  234 (360)
T ss_pred             ccccccccccccccccCCCccccCHHHHc---CCCCCCcc--eeccc--------------cceeeecccCCC-------
Confidence                 000111223568999999999998   67788888  99999              999999887764       


Q ss_pred             HHhhhcCCCCCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC---hhh
Q psy7309         152 HNIRRENGPSTGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS---SEQ  227 (454)
Q Consensus       152 ~~i~~~~~p~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt---a~e  227 (454)
                              |+.+........++.. .....+|...           ..++.+.++|     .+|+ .||.+|++   ++|
T Consensus       235 --------Pf~~~~~~~~~~~i~~~~~~~~~p~~~-----------~~s~~~~~li-----~~l~-~~p~~R~~~~~~~e  289 (360)
T cd05627         235 --------PFCSETPQETYRKVMNWKETLVFPPEV-----------PISEKAKDLI-----LRFC-TDSENRIGSNGVEE  289 (360)
T ss_pred             --------CCCCCCHHHHHHHHHcCCCceecCCCC-----------CCCHHHHHHH-----HHhc-cChhhcCCCCCHHH
Confidence                    3333333333333221 1222333321           1236778888     8877 49999995   799


Q ss_pred             hhcCccccc
Q psy7309         228 NLCQPISLE  236 (454)
Q Consensus       228 ~l~hp~f~~  236 (454)
                      +++||||..
T Consensus       290 i~~hp~f~~  298 (360)
T cd05627         290 IKSHPFFEG  298 (360)
T ss_pred             HhcCCCCCC
Confidence            999999985

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.93  E-value=1.2e-26  Score=231.41  Aligned_cols=164  Identities=24%  Similarity=0.301  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++...                         ...
T Consensus        96 ~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~-------------------------~~~  150 (327)
T cd05617          96 EHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGL-------------------------GPG  150 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceecc-------------------------CCC
Confidence            4678899999999999999999999999999999999999999999987421                         111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.+....         ...
T Consensus       151 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~ell~g~~pf~~~---------~~~  202 (327)
T cd05617         151 DTTSTFCGTPNYIAPEILR---GEEYGFSV--DWWAL--------------GVLMFEMMAGRSPFDII---------TDN  202 (327)
T ss_pred             CceecccCCcccCCHHHHC---CCCCCchh--eeehh--------------HHHHHHHHhCCCCCCcc---------CCC
Confidence            2233468999999999998   67788888  99999              99999977765422100         000


Q ss_pred             CCchhhh-hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh------hhhhcCccc
Q psy7309         162 TGSNVQK-SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS------EQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta------~e~l~hp~f  234 (454)
                      ....... ....+. .....+|...             +..+.+++     ++||+.||++|+++      ++++.||||
T Consensus       203 ~~~~~~~~~~~~~~-~~~~~~p~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~~~~~~i~~h~~f  263 (327)
T cd05617         203 PDMNTEDYLFQVIL-EKPIRIPRFL-------------SVKASHVL-----KGFLNKDPKERLGCQPQTGFSDIKSHTFF  263 (327)
T ss_pred             cccccHHHHHHHHH-hCCCCCCCCC-------------CHHHHHHH-----HHHhccCHHHcCCCCCCCCHHHHHcCCCC
Confidence            0011111 112222 2333344332             25667888     99999999999985      699999999


Q ss_pred             ccC
Q psy7309         235 LEG  237 (454)
Q Consensus       235 ~~~  237 (454)
                      ...
T Consensus       264 ~~~  266 (327)
T cd05617         264 RSI  266 (327)
T ss_pred             CCC
Confidence            853

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>KOG0603|consensus

Probab=99.93  E-value=1.1e-26  Score=237.26  Aligned_cols=150  Identities=25%  Similarity=0.362  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE-ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI-DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl-~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++..|++||+.|+.|||++|++||||||+|||+ +..++++|+|||.++....                           
T Consensus       416 e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~~~g~lrltyFG~a~~~~~---------------------------  468 (612)
T KOG0603|consen  416 EASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDGSAGHLRLTYFGFWSELER---------------------------  468 (612)
T ss_pred             HHHHHHHHHHHHHHHHHhcCeeecCCChhheeecCCCCcEEEEEechhhhCch---------------------------
Confidence            466799999999999999999999999999999 6889999999999986532                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       ...+.+-|..|.|||++.   ...|+..+  |+|||              |+++|+|++|+...               
T Consensus       469 -~~~tp~~t~~y~APEvl~---~~~yt~ac--D~WSL--------------GvlLy~ML~G~tp~---------------  513 (612)
T KOG0603|consen  469 -SCDTPALTLQYVAPEVLA---IQEYTEAC--DWWSL--------------GVLLYEMLTGRTLF---------------  513 (612)
T ss_pred             -hhcccchhhcccChhhhc---cCCCCcch--hhHHH--------------HHHHHHHHhCCCcc---------------
Confidence             134457789999999998   78999999  99999              77777766655411               


Q ss_pred             CCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         162 TGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ...+.. .+..++.   ...+.             ...+..+++||     .+||+.||.+|+|+.|++.||||.
T Consensus       514 ~~~P~~~ei~~~i~---~~~~s-------------~~vS~~AKdLl-----~~LL~~dP~~Rl~~~~i~~h~w~~  567 (612)
T KOG0603|consen  514 AAHPAGIEIHTRIQ---MPKFS-------------ECVSDEAKDLL-----QQLLQVDPALRLGADEIGAHPWFL  567 (612)
T ss_pred             ccCCchHHHHHhhc---CCccc-------------cccCHHHHHHH-----HHhccCChhhCcChhhhccCcchh
Confidence            111110 1111111   11111             23458899999     999999999999999999999993

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.93  E-value=3.1e-26  Score=228.44  Aligned_cols=164  Identities=26%  Similarity=0.319  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..+..                        ...
T Consensus       102 ~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~------------------------~~~  157 (330)
T cd05601         102 DMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTA------------------------NKM  157 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCC------------------------CCc
Confidence            35778999999999999999999999999999999999999999999975421                        111


Q ss_pred             CCCcCcccccceecccccccc---ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG---VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~---~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      ......+||+.|+|||++...   ....++.++  ||||+              ||++|||++|..              
T Consensus       158 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~--Diwsl--------------G~il~el~~g~~--------------  207 (330)
T cd05601         158 VNSKLPVGTPDYIAPEVLTTMNGDGKGTYGVEC--DWWSL--------------GVIAYEMIYGRS--------------  207 (330)
T ss_pred             eeeecccCCccccCHHHhccccccccCCCCCcc--eeecc--------------cceeeeeccCCC--------------
Confidence            122345799999999998621   134567778  99999              999999887654              


Q ss_pred             CCCCCchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+........+.++... ....+|...           ..++...+||     .+||. ||++|||++++++||||...
T Consensus       208 -Pf~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~~~~~~~li-----~~ll~-~p~~R~t~~~l~~h~~~~~~  269 (330)
T cd05601         208 -PFHEGTSAKTYNNIMNFQRFLKFPEDP-----------KVSSDFLDLI-----QSLLC-GQKERLGYEGLCCHPFFSKI  269 (330)
T ss_pred             -CCCCCCHHHHHHHHHcCCCccCCCCCC-----------CCCHHHHHHH-----HHHcc-ChhhCCCHHHHhCCCCcCCC
Confidence             23222222222222211 112233221           1236677888     99997 99999999999999999863

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=3.2e-26  Score=228.75  Aligned_cols=162  Identities=29%  Similarity=0.369  Sum_probs=119.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++....                            
T Consensus       101 ~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~----------------------------  152 (333)
T cd05600         101 DHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIV----------------------------  152 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCcccc----------------------------
Confidence            3578899999999999999999999999999999999999999999987432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              ||++|||++|.+               |+
T Consensus       153 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~ell~g~~---------------pf  198 (333)
T cd05600         153 TYANSVVGSPDYMAPEVLR---GKGYDFTV--DYWSL--------------GCMLYEFLCGFP---------------PF  198 (333)
T ss_pred             cccCCcccCccccChhHhc---CCCCCCcc--ceecc--------------hHHHhhhhhCCC---------------CC
Confidence            1234568999999999998   56788888  99999              999999877654               22


Q ss_pred             CCchhhhhhhhhccCC-CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSP-PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      ...+.......+.... ....|....      .. ...++.+.++|     .+||..+|.+|||++|+++||||...
T Consensus       199 ~~~~~~~~~~~i~~~~~~~~~~~~~~------~~-~~~s~~~~~li-----~~~l~~~~~rr~s~~~ll~h~~~~~~  263 (333)
T cd05600         199 SGSTPNETWENLKYWKETLQRPVYDD------PR-FNLSDEAWDLI-----TKLINDPSRRFGSLEDIKNHPFFKEV  263 (333)
T ss_pred             CCCCHHHHHHHHHhccccccCCCCCc------cc-cccCHHHHHHH-----HHHhhChhhhcCCHHHHHhCcccCCC
Confidence            2222222222221110 011111100      00 11236677888     99999999999999999999999853

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.93  E-value=1.2e-26  Score=235.47  Aligned_cols=184  Identities=27%  Similarity=0.340  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                        ...
T Consensus       103 ~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~------------------------~~~  158 (372)
T cd07853         103 DHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEP------------------------DES  158 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeeccc------------------------Ccc
Confidence            45889999999999999999999999999999999999999999999875321                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ...+..++|+.|+|||++..  ...|+.++  ||||+              ||++|||++|++.     ....+..+...
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~el~~g~~pf~~~~~~~~~~~i~~~  220 (372)
T cd07853         159 KHMTQEVVTQYYRAPEILMG--SRHYTSAV--DIWSV--------------GCIFAELLGRRILFQAQSPIQQLDLITDL  220 (372)
T ss_pred             ccCCCCCcCCCcCCHHHHcC--CCCCCcHH--HHHhH--------------HHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            22344578999999999871  24577788  99999              9999998776642     22333333332


Q ss_pred             cCCCCCCchhhhh----hhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         157 ENGPSTGSNVQKS----LQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       157 ~~~p~~~~~~~~~----~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      .+.|... .....    ...+. ......+.....+.    .....++.+.+||     .+||+.||++|||+.|+|+||
T Consensus       221 ~g~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~li-----~~mL~~dP~~R~t~~e~l~hp  289 (372)
T cd07853         221 LGTPSLE-AMRSACEGARAHIL-RGPHKPPSLPVLYT----LSSQATHEAVHLL-----CRMLVFDPDKRISAADALAHP  289 (372)
T ss_pred             cCCCCHH-HHHHhhHHHHHHHH-hCCCCCCchHHhcc----cCCCCCHHHHHHH-----HHhCCCChhhCcCHHHHhcCH
Confidence            3333221 11110    11111 11111111100000    0112246667788     999999999999999999999


Q ss_pred             ccccCC
Q psy7309         233 ISLEGS  238 (454)
Q Consensus       233 ~f~~~~  238 (454)
                      ||....
T Consensus       290 ~~~~~~  295 (372)
T cd07853         290 YLDEGR  295 (372)
T ss_pred             hhCCCc
Confidence            998753

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.93  E-value=4.1e-26  Score=242.73  Aligned_cols=180  Identities=21%  Similarity=0.264  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ++.++.||+.||.|||++||+||||||+|||++. ++.+||+|||+|+.+..                        ....
T Consensus       257 i~~i~~qll~aL~yLH~~gIiHRDLKP~NILl~~~~~~~KL~DFGlA~~l~~------------------------~~~~  312 (566)
T PLN03225        257 IQTIMRQILFALDGLHSTGIVHRDVKPQNIIFSEGSGSFKIIDLGAAADLRV------------------------GINY  312 (566)
T ss_pred             HHHHHHHHHHHHHHHHHCCEEeCcCCHHHEEEeCCCCcEEEEeCCCcccccc------------------------cccc
Confidence            6789999999999999999999999999999986 57899999999975421                        1112


Q ss_pred             CCcCcccccceecccccccccc-------------------ccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCc
Q psy7309          83 SHTGQVGTALYAAPELDSHGVK-------------------AMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDR  143 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~-------------------~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~  143 (454)
                      .....+||+.|+|||.+.....                   ..++.++  ||||+              ||++|||+.+.
T Consensus       313 ~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~--DVwSl--------------GviL~el~~~~  376 (566)
T PLN03225        313 IPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRF--DIYSA--------------GLIFLQMAFPN  376 (566)
T ss_pred             CCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCc--ccHHH--------------HHHHHHHHhCc
Confidence            2345688999999997541111                   1244556  99999              99999965433


Q ss_pred             hh---hHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCC
Q psy7309         144 PK---TLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPS  220 (454)
Q Consensus       144 ~~---~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~  220 (454)
                      ..   ....+...+.....     ........+...........   +.  .+  ........+||     .+||+.||+
T Consensus       377 ~~~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~---~~--~~--d~~~~~~~dLi-----~~mL~~dP~  439 (566)
T PLN03225        377 LRSDSNLIQFNRQLKRNDY-----DLVAWRKLVEPRASPDLRRG---FE--VL--DLDGGAGWELL-----KSMMRFKGR  439 (566)
T ss_pred             CCCchHHHHHHHHHHhcCC-----cHHHHHHhhccccchhhhhh---hh--hc--cccchHHHHHH-----HHHccCCcc
Confidence            21   12222222221111     11111111110100000111   00  00  11123345777     999999999


Q ss_pred             CCCChhhhhcCcccccCCCC
Q psy7309         221 KRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       221 ~Rpta~e~l~hp~f~~~~~~  240 (454)
                      +|||++|+|+||||......
T Consensus       440 kR~ta~e~L~Hpff~~~~~~  459 (566)
T PLN03225        440 QRISAKAALAHPYFDREGLL  459 (566)
T ss_pred             cCCCHHHHhCCcCcCCCCcc
Confidence            99999999999999876554

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.93  E-value=2.5e-26  Score=230.64  Aligned_cols=184  Identities=24%  Similarity=0.296  Sum_probs=122.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCc--cCCCCCC--CCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY--ILPPIDS--TAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~   77 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..................  ..+....  ...
T Consensus       101 ~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (350)
T cd05573         101 ETARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDH  180 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCccccccccccccccccccccccccc
Confidence            467889999999999999999999999999999999999999999999865322100000000000  0000000  000


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                      ..........+||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.             
T Consensus       181 ~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~ell~g~~-------------  228 (350)
T cd05573         181 KQRRVRANSTVGTPDYIAPEVLR---GTPYGLEC--DWWSL--------------GVILYEMLYGFP-------------  228 (350)
T ss_pred             ccccccccccccCccccCHHHHc---CCCCCCce--eeEec--------------chhhhhhccCCC-------------
Confidence            01112334568999999999998   56788888  99999              999999887654             


Q ss_pred             CCCCCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-hhhhhcCcccc
Q psy7309         158 NGPSTGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-SEQNLCQPISL  235 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-a~e~l~hp~f~  235 (454)
                        |+..........++.. .....+|...           ..++...++|     .+||. ||.+||+ ++|+++||||.
T Consensus       229 --Pf~~~~~~~~~~~i~~~~~~~~~p~~~-----------~~~~~~~~li-----~~ll~-dp~~R~~s~~~ll~hp~~~  289 (350)
T cd05573         229 --PFYSDTLQETYNKIINWKESLRFPPDP-----------PVSPEAIDLI-----CRLLC-DPEDRLGSFEEIKSHPFFK  289 (350)
T ss_pred             --CCCCCCHHHHHHHHhccCCcccCCCCC-----------CCCHHHHHHH-----HHHcc-ChhhcCCCHHHHhcCCCcC
Confidence              2322222222222221 1222233321           1236677888     99997 9999999 99999999997


Q ss_pred             c
Q psy7309         236 E  236 (454)
Q Consensus       236 ~  236 (454)
                      .
T Consensus       290 ~  290 (350)
T cd05573         290 G  290 (350)
T ss_pred             C
Confidence            5

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.93  E-value=2.2e-26  Score=232.91  Aligned_cols=185  Identities=25%  Similarity=0.332  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCC-----C--
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID-----S--   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~-----~--   74 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++++||+|||+|+...................+...     .  
T Consensus       101 ~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (363)
T cd05628         101 EETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKR  180 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccccccccccccccccccccccccccccc
Confidence            467889999999999999999999999999999999999999999999754321100000000000000000     0  


Q ss_pred             ---CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHH
Q psy7309          75 ---TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELK  151 (454)
Q Consensus        75 ---~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~  151 (454)
                         .............+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+       
T Consensus       181 ~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~---~~~~~~~~--DvwSl--------------Gvil~ell~G~~-------  234 (363)
T cd05628         181 KAETWKRNRRQLAFSTVGTPDYIAPEVFM---QTGYNKLC--DWWSL--------------GVIMYEMLIGYP-------  234 (363)
T ss_pred             ccchhhhccccccccccCCccccCHHHHc---CCCCCCch--hhhhh--------------HHHHHHHHhCCC-------
Confidence               00000111234568999999999998   67788888  99999              999999877654       


Q ss_pred             HHhhhcCCCCCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCC---CCCChhh
Q psy7309         152 HNIRRENGPSTGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPS---KRPSSEQ  227 (454)
Q Consensus       152 ~~i~~~~~p~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~---~Rpta~e  227 (454)
                              |+.+........++.. .....+|...+           .++.+.++|     .+|+. +|.   .||+++|
T Consensus       235 --------Pf~~~~~~~~~~~i~~~~~~~~~p~~~~-----------~s~~~~~li-----~~l~~-~~~~r~~r~~~~e  289 (363)
T cd05628         235 --------PFCSETPQETYKKVMNWKETLIFPPEVP-----------ISEKAKDLI-----LRFCC-EWEHRIGAPGVEE  289 (363)
T ss_pred             --------CCCCCCHHHHHHHHHcCcCcccCCCcCC-----------CCHHHHHHH-----HHHcC-ChhhcCCCCCHHH
Confidence                    3433333333333332 12333443321           236777888     77664 444   4689999


Q ss_pred             hhcCcccccC
Q psy7309         228 NLCQPISLEG  237 (454)
Q Consensus       228 ~l~hp~f~~~  237 (454)
                      +++||||...
T Consensus       290 i~~hp~f~~~  299 (363)
T cd05628         290 IKTNPFFEGV  299 (363)
T ss_pred             HhCCCCCCCC
Confidence            9999999853

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>KOG0589|consensus

Probab=99.93  E-value=1.5e-26  Score=231.62  Aligned_cols=158  Identities=30%  Similarity=0.420  Sum_probs=129.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +++++|+-|++.|++|||+++|+|||||+.|||++.++.|||+|||+|+.+..                         ..
T Consensus       106 ~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifltk~~~VkLgDfGlaK~l~~-------------------------~~  160 (426)
T KOG0589|consen  106 ERILKWFVQILLAVNYLHENRVLHRDLKCANIFLTKDKKVKLGDFGLAKILNP-------------------------ED  160 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhccccCceeecchhhhhhcCC-------------------------ch
Confidence            36899999999999999999999999999999999999999999999997642                         22


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+.+||+.||+||++.   +.+|+.+.  |||||              ||++|||+.-+               .+|
T Consensus       161 ~~a~tvvGTp~YmcPEil~---d~pYn~KS--DiWsL--------------GC~~yEm~~lk---------------~aF  206 (426)
T KOG0589|consen  161 SLASTVVGTPYYMCPEILS---DIPYNEKS--DIWSL--------------GCCLYEMCTLK---------------PAF  206 (426)
T ss_pred             hhhheecCCCcccCHHHhC---CCCCCccC--cchhh--------------cchHHHHHhcc---------------ccc
Confidence            3556789999999999999   89999999  99999              99999976532               344


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.+......++......++|..             .+.+++.++     +.||..+|..||+|.++|.+|....
T Consensus       207 ~a~~m~~Li~ki~~~~~~Plp~~-------------ys~el~~lv-----~~~l~~~P~~RPsa~~LL~~P~l~~  263 (426)
T KOG0589|consen  207 KASNMSELILKINRGLYSPLPSM-------------YSSELRSLV-----KSMLRKNPEHRPSALELLRRPHLLR  263 (426)
T ss_pred             CccchHHHHHHHhhccCCCCCcc-------------ccHHHHHHH-----HHHhhcCCccCCCHHHHhhChhhhh
Confidence            45555555555544443444443             237788888     9999999999999999999987764

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.93  E-value=1.3e-26  Score=243.90  Aligned_cols=161  Identities=29%  Similarity=0.383  Sum_probs=123.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+++.....                       ....
T Consensus       144 ~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~-----------------------~~~~  200 (496)
T PTZ00283        144 EAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAAT-----------------------VSDD  200 (496)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEecccCeecccc-----------------------cccc
Confidence            57889999999999999999999999999999999999999999999754321                       1112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      .....+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |+.
T Consensus       201 ~~~~~~Gt~~Y~aPE~~~---~~~~s~k~--DVwSl--------------GvilyeLltG~~---------------Pf~  246 (496)
T PTZ00283        201 VGRTFCGTPYYVAPEIWR---RKPYSKKA--DMFSL--------------GVLLYELLTLKR---------------PFD  246 (496)
T ss_pred             ccccccCCcceeCHHHhC---CCCCCcHH--HHHHH--------------HHHHHHHHHCCC---------------CCC
Confidence            234568999999999998   66788888  99999              999999876553               333


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ..+....+..........+|..             .++...+++     .+||+.||.+|||+.++++|||+....
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~L~~dP~~RPs~~ell~~p~~~~~~  304 (496)
T PTZ00283        247 GENMEEVMHKTLAGRYDPLPPS-------------ISPEMQEIV-----TALLSSDPKRRPSSSKLLNMPICKLFI  304 (496)
T ss_pred             CCCHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHcccChhhCcCHHHHHhCHHHHHhh
Confidence            3333333333332322233332             226677888     999999999999999999999987543

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.93  E-value=1.4e-26  Score=228.64  Aligned_cols=186  Identities=20%  Similarity=0.252  Sum_probs=122.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       104 ~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~-------------------------~~  158 (309)
T cd07872         104 HNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSV-------------------------PT  158 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCC-------------------------Cc
Confidence            35788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......+|+.|+|||++..  ...++.++  ||||+              ||++|+|++|++.     ..+.+...+..
T Consensus       159 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~el~tg~~pf~~~~~~~~~~~~~~~  220 (309)
T cd07872         159 KTYSNEVVTLWYRPPDVLLG--SSEYSTQI--DMWGV--------------GCIFFEMASGRPLFPGSTVEDELHLIFRL  220 (309)
T ss_pred             cccccccccccccCCHHHhC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            12234578999999999862  34577778  99999              9999998776642     12223233332


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.|... .+...... .......++...+ ..+.... ...++...++|     .+||+.||.+|||++|+++||||..
T Consensus       221 ~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~li-----~~~L~~dp~~R~t~~e~l~h~~~~~  291 (309)
T cd07872         221 LGTPTEE-TWPGISSN-DEFKNYNFPKYKP-QPLINHA-PRLDTEGIELL-----TKFLQYESKKRISAEEAMKHAYFRS  291 (309)
T ss_pred             hCCCCHH-HHhhhcch-hhhhhhhcCccCC-Cchhhhc-cCCCHHHHHHH-----HHhccCChhhCCCHHHHhcChhhhh
Confidence            2333221 11111000 0000011111100 0010111 12346677888     9999999999999999999999986


Q ss_pred             CCC
Q psy7309         237 GSS  239 (454)
Q Consensus       237 ~~~  239 (454)
                      ...
T Consensus       292 ~~~  294 (309)
T cd07872         292 LGT  294 (309)
T ss_pred             ccc
Confidence            543

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>KOG0690|consensus

Probab=99.93  E-value=1.3e-26  Score=219.00  Aligned_cols=172  Identities=24%  Similarity=0.315  Sum_probs=139.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.+-.+|++||.|||+++||.||||.+|.|+|.+|++||+|||+++.-.                         ..+
T Consensus       268 ~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkDGHIKitDFGLCKE~I-------------------------~~g  322 (516)
T KOG0690|consen  268 DRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKDGHIKITDFGLCKEEI-------------------------KYG  322 (516)
T ss_pred             hhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccCCceEeeecccchhcc-------------------------ccc
Confidence            3577888999999999999999999999999999999999999999998432                         234


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....++||||.|+|||++-   ...|+..+  |.|.+              |+++|||+.|+.               |+
T Consensus       323 ~t~kTFCGTPEYLAPEVle---DnDYgraV--DWWG~--------------GVVMYEMmCGRL---------------PF  368 (516)
T KOG0690|consen  323 DTTKTFCGTPEYLAPEVLE---DNDYGRAV--DWWGV--------------GVVMYEMMCGRL---------------PF  368 (516)
T ss_pred             ceeccccCChhhcCchhhc---ccccccee--ehhhh--------------hHHHHHHHhccC---------------cc
Confidence            5567799999999999998   78999999  99999              999999777664               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                      ......+.+.-+. .....||..+             +++++.|+     ..+|.+||++|..     |.|++.|+||..
T Consensus       369 yn~dh~kLFeLIl-~ed~kFPr~l-------------s~eAktLL-----sGLL~kdP~kRLGgGpdDakEi~~h~FF~~  429 (516)
T KOG0690|consen  369 YNKDHEKLFELIL-MEDLKFPRTL-------------SPEAKTLL-----SGLLKKDPKKRLGGGPDDAKEIMRHRFFAS  429 (516)
T ss_pred             cccchhHHHHHHH-hhhccCCccC-------------CHHHHHHH-----HHHhhcChHhhcCCCchhHHHHHhhhhhcc
Confidence            2222222222222 4556677664             38899999     9999999999985     789999999984


Q ss_pred             CCCCCCCccCccccccCCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPPP  259 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~~  259 (454)
                              ++|+.+...+..||.
T Consensus       430 --------v~W~~~~~Kki~PPf  444 (516)
T KOG0690|consen  430 --------VDWEATYRKKIEPPF  444 (516)
T ss_pred             --------CCHHHHHHhccCCCC
Confidence                    678888888877774

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.93  E-value=3e-26  Score=232.61  Aligned_cols=164  Identities=23%  Similarity=0.303  Sum_probs=121.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                        ....
T Consensus       143 ~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~------------------------~~~~  198 (370)
T cd05596         143 WARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDA------------------------NGMV  198 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccC------------------------CCcc
Confidence            5678899999999999999999999999999999999999999999875421                        1111


Q ss_pred             CCcCcccccceecccccccc-ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHG-VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~-~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .....+||+.|+|||++... ....++.++  ||||+              ||++|||++|.+               |+
T Consensus       199 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~--DiwSl--------------GvilyelltG~~---------------Pf  247 (370)
T cd05596         199 RCDTAVGTPDYISPEVLKSQGGDGYYGREC--DWWSV--------------GVFLYEMLVGDT---------------PF  247 (370)
T ss_pred             cCCCCCCCcCeECHHHhccCCCCCCCCCce--eeeeh--------------hHHHHHHHhCCC---------------Cc
Confidence            22346899999999998632 123477788  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC--CCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK--RPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~--Rpta~e~l~hp~f~~~  237 (454)
                      .+.........+... ....+|...           ..+..+.++|     ++||+.+|.+  |+|++|+++||||...
T Consensus       248 ~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~s~~~~~li-----~~~L~~~p~r~~R~s~~ell~h~~~~~~  310 (370)
T cd05596         248 YADSLVGTYSKIMDHKNSLTFPDDI-----------EISKQAKDLI-----CAFLTDREVRLGRNGVDEIKSHPFFKND  310 (370)
T ss_pred             CCCCHHHHHHHHHcCCCcCCCCCcC-----------CCCHHHHHHH-----HHHccChhhccCCCCHHHHhcCcccCCC
Confidence            333333333333221 223333321           1246778888     9999999998  9999999999999853

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.93  E-value=2.7e-26  Score=223.20  Aligned_cols=180  Identities=24%  Similarity=0.323  Sum_probs=120.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus        99 ~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~-------------------------~~  153 (284)
T cd07839          99 EIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGI-------------------------PV  153 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCC-------------------------CC
Confidence            46789999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh------hHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK------TLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~------~~~~l~~~i~  155 (454)
                      .......+|+.|+|||++..  ...++.++  ||||+              ||++|+|++++.+      ....+...+.
T Consensus       154 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~l~tg~~p~~~~~~~~~~~~~~~~  215 (284)
T cd07839         154 RCYSAEVVTLWYRPPDVLFG--AKLYSTSI--DMWSA--------------GCIFAELANAGRPLFPGNDVDDQLKRIFR  215 (284)
T ss_pred             CCcCCCccccCCcChHHHhC--CcccCcHH--HHHHH--------------HHHHHHHHhcCCCCcCCCCHHHHHHHHHH
Confidence            12334577899999999861  34467777  99999              9999997754321      1222222222


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ....+ ....+.... ...  ....++.......|....+. .++.+.++|     ++||+.||.+|||++|++.||||
T Consensus       216 ~~~~~-~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~li-----~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         216 LLGTP-TEESWPGVS-KLP--DYKPYPMYPATTSLVNVVPK-LNSTGRDLL-----QNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             HhCCC-ChHHhHHhh-hcc--cccccCCCCCcchhhhhccc-CCHHHHHHH-----HHHhcCChhhcCCHHHHhcCCCC
Confidence            22222 111111111 110  00111111111223332222 347778888     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>KOG0192|consensus

Probab=99.93  E-value=2.8e-26  Score=229.73  Aligned_cols=154  Identities=29%  Similarity=0.373  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC-CcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG-IIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g-iiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..+.+++.||+.||+|||+++ ||||||||+|||++.++ ++||+|||+++....                         
T Consensus       142 ~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~-------------------------  196 (362)
T KOG0192|consen  142 KVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVI-------------------------  196 (362)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeecc-------------------------
Confidence            457899999999999999999 99999999999999998 999999999985432                         


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .....+...||+.|||||++... ...|+.++  ||||+              |+++||+++++.               
T Consensus       197 ~~~~~~~~~GT~~wMAPEv~~~~-~~~~~~K~--DvySF--------------gIvlWEl~t~~~---------------  244 (362)
T KOG0192|consen  197 SKTSMTSVAGTYRWMAPEVLRGE-KSPYTEKS--DVYSF--------------GIVLWELLTGEI---------------  244 (362)
T ss_pred             ccccccCCCCCccccChhhhcCC-CCcCCccc--hhhhH--------------HHHHHHHHHCCC---------------
Confidence            11344557999999999999843 46899999  99999              999999887643               


Q ss_pred             CCCCchhhhhhhh-hccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         160 PSTGSNVQKSLQK-FQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       160 p~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      |+.+......... .....++.+|...             .+....++     .+||..||.+||+..+++.
T Consensus       245 Pf~~~~~~~~~~~v~~~~~Rp~~p~~~-------------~~~l~~l~-----~~CW~~dp~~RP~f~ei~~  298 (362)
T KOG0192|consen  245 PFEDLAPVQVASAVVVGGLRPPIPKEC-------------PPHLSSLM-----ERCWLVDPSRRPSFLEIVS  298 (362)
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCccC-------------CHHHHHHH-----HHhCCCCCCcCCCHHHHHH
Confidence            3333332222222 2235555556543             26666777     9999999999999998864

>KOG4645|consensus

Probab=99.93  E-value=2.8e-26  Score=248.23  Aligned_cols=167  Identities=25%  Similarity=0.377  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      .+.+..|+++|++|||++|||||||||+|||++.+|.+|++|||.|..+.....                     .....
T Consensus      1336 t~vyt~qll~gla~LH~~gIVHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~---------------------~~~~e 1394 (1509)
T KOG4645|consen 1336 TRVYTKQLLEGLAYLHEHGIVHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQ---------------------TMPGE 1394 (1509)
T ss_pred             HHHHHHHHHHHHHHHHhcCceecCCCccceeeecCCcEEeecccceeEecCchh---------------------cCCHH
Confidence            456789999999999999999999999999999999999999999986643110                     22244


Q ss_pred             CcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCC
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTG  163 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~  163 (454)
                      ..+.+||+.|||||++....+.+-....  ||||+              ||++.||.+|+-+..+ +             
T Consensus      1395 l~~~~GT~~YMAPEvit~t~~kG~~~A~--DiWsl--------------GCVVlEM~tGkrPW~~-~------------- 1444 (1509)
T KOG4645|consen 1395 LQSMMGTPMYMAPEVITGTKGKGHGGAA--DIWSL--------------GCVVLEMATGKRPWAE-L------------- 1444 (1509)
T ss_pred             HHhhcCCchhcCchhhcccccCCCCcch--hhhcc--------------cceEEEeecCCCchhh-c-------------
Confidence            5578999999999999844334444556  99999              9999999887643211 1             


Q ss_pred             chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         164 SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      .+...+...+..+..+.+|+.+             +++.++||     ..||+.||++|+++.|++.|-|-.....
T Consensus      1445 dne~aIMy~V~~gh~Pq~P~~l-------------s~~g~dFl-----e~Cl~~dP~~Rw~~~qlle~~f~~~~~d 1502 (1509)
T KOG4645|consen 1445 DNEWAIMYHVAAGHKPQIPERL-------------SSEGRDFL-----EHCLEQDPKMRWTASQLLEHAFGKSCTD 1502 (1509)
T ss_pred             cchhHHHhHHhccCCCCCchhh-------------hHhHHHHH-----HHHHhcCchhhhHHHHHHHhhccccccc
Confidence            1223344455557777778764             38899999     9999999999999999999998765543

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.93  E-value=3.8e-26  Score=231.88  Aligned_cols=165  Identities=24%  Similarity=0.308  Sum_probs=119.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|.....                        ...
T Consensus       142 ~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~------------------------~~~  197 (370)
T cd05621         142 KWAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDE------------------------TGM  197 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceeccc------------------------CCc
Confidence            35788999999999999999999999999999999999999999999975421                        111


Q ss_pred             CCCcCcccccceeccccccccc-cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGV-KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~-~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......+||+.|+|||++.... ...|+.++  |+||+              ||++|||++|.+               |
T Consensus       198 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~~--DiwSl--------------G~ilyell~G~~---------------P  246 (370)
T cd05621         198 VRCDTAVGTPDYISPEVLKSQGGDGYYGREC--DWWSV--------------GVFLFEMLVGDT---------------P  246 (370)
T ss_pred             eecccCCCCcccCCHHHHhccCCCCCCCccc--CEEee--------------hHHHHHHHhCCC---------------C
Confidence            1234568999999999987321 23477788  99999              999999877654               3


Q ss_pred             CCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC--CCChhhhhcCcccccC
Q psy7309         161 STGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK--RPSSEQNLCQPISLEG  237 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~--Rpta~e~l~hp~f~~~  237 (454)
                      +...+......++.. .....+|...           ..+..+++++     .+||..+|.+  |+|++|+++||||...
T Consensus       247 f~~~~~~~~~~~i~~~~~~~~~p~~~-----------~~s~~~~~li-----~~~L~~~~~r~~R~~~~e~l~hp~~~~~  310 (370)
T cd05621         247 FYADSLVGTYSKIMDHKNSLNFPEDV-----------EISKHAKNLI-----CAFLTDREVRLGRNGVEEIKQHPFFKND  310 (370)
T ss_pred             CCCCCHHHHHHHHHhCCcccCCCCcc-----------cCCHHHHHHH-----HHHccCchhccCCCCHHHHhcCcccCCC
Confidence            333333333333321 1223333321           1236677888     9999866544  8999999999999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0664|consensus

Probab=99.93  E-value=2.6e-26  Score=212.61  Aligned_cols=187  Identities=26%  Similarity=0.296  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++-+++||+.||+|||+.||.||||||.|.|++.|..+||||||+|+....                        ...
T Consensus       156 DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~------------------------d~~  211 (449)
T KOG0664|consen  156 DHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQ------------------------RDR  211 (449)
T ss_pred             chhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccch------------------------hhh
Confidence            35788999999999999999999999999999999999999999999996432                        234


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...+..+-|-+|+|||++.  +...|+..+  ||||+              |||+.|+++.+.     ..+.++.-++..
T Consensus       212 ~hMTqEVVTQYYRAPEiLM--GaRhYs~Av--DiWSV--------------GCIFaELLgRrILFQAq~PiqQL~lItdL  273 (449)
T KOG0664|consen  212 LNMTHEVVTQYYRAPELLM--GARRYTGAV--DIWSV--------------GCIFAELLQRKILFQAAGPIEQLQMIIDL  273 (449)
T ss_pred             hhhHHHHHHHHhccHHHhh--cchhhcCcc--ceehh--------------hHHHHHHHhhhhhhhccChHHHHHHHHHH
Confidence            4567788999999999998  367899999  99999              999999887554     344555444444


Q ss_pred             cCCCCCCchhhhhhh----hhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         157 ENGPSTGSNVQKSLQ----KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      ++.|. -+..+..+.    -+. .....-|...   ..-++    .++.-+.-.-|+++..||..||.+|.+.++++.|+
T Consensus       274 LGTPs-~EaMr~ACEGAk~H~L-R~~~k~Ps~~---vLYtl----sS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~  344 (449)
T KOG0664|consen  274 LGTPS-QEAMKYACEGAKNHVL-RAGLRAPDTQ---RLYKI----ASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHR  344 (449)
T ss_pred             hCCCc-HHHHHHHhhhhHHHhh-ccCCCCCCcc---ceeee----cCCcccchHHHHHHHHHhCCCCcccccHhhhcccc
Confidence            44443 222221111    111 1111111110   01111    11111222222344899999999999999999999


Q ss_pred             ccccCCC
Q psy7309         233 ISLEGSS  239 (454)
Q Consensus       233 ~f~~~~~  239 (454)
                      +..++.-
T Consensus       345 ~~~e~R~  351 (449)
T KOG0664|consen  345 YLEEGRL  351 (449)
T ss_pred             cccccce
Confidence            9887654

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.93  E-value=4.2e-26  Score=229.88  Aligned_cols=166  Identities=27%  Similarity=0.350  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.+++||+.||+|||++||+||||||+|||++.++.+||+|||++..+..                         ...
T Consensus       169 ~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~-------------------------~~~  223 (353)
T PLN00034        169 FLADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQ-------------------------TMD  223 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceeccc-------------------------ccc
Confidence            4678999999999999999999999999999999999999999999875431                         111


Q ss_pred             CCcCcccccceeccccccccc--cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGV--KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~--~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .....+||..|+|||++....  +..++.++  ||||+              ||++|||+.|+.....            
T Consensus       224 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~--Dvwsl--------------Gvil~el~~g~~pf~~------------  275 (353)
T PLN00034        224 PCNSSVGTIAYMSPERINTDLNHGAYDGYAG--DIWSL--------------GVSILEFYLGRFPFGV------------  275 (353)
T ss_pred             cccccccCccccCccccccccccCcCCCcch--hHHHH--------------HHHHHHHHhCCCCCCC------------
Confidence            223458999999999985211  22234466  99999              9999997766542110            


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      .....+......+........+..             .+..+.+||     .+||+.||++|||+.|+++||||.....
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~P~~Rpt~~ell~hp~~~~~~~  336 (353)
T PLN00034        276 GRQGDWASLMCAICMSQPPEAPAT-------------ASREFRHFI-----SCCLQREPAKRWSAMQLLQHPFILRAQP  336 (353)
T ss_pred             CCCccHHHHHHHHhccCCCCCCCc-------------cCHHHHHHH-----HHHccCChhhCcCHHHHhcCcccccCCc
Confidence            000111111111111222222221             235677888     9999999999999999999999997643

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.93  E-value=3.6e-26  Score=227.65  Aligned_cols=158  Identities=27%  Similarity=0.353  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       101 ~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~-------------------------~~  155 (323)
T cd05615         101 PQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMV-------------------------DG  155 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCC-------------------------CC
Confidence            46788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  |+||+              ||++|||++|++               |+
T Consensus       156 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~elltG~~---------------pf  201 (323)
T cd05615         156 VTTRTFCGTPDYIAPEIIA---YQPYGKSV--DWWAY--------------GVLLYEMLAGQP---------------PF  201 (323)
T ss_pred             ccccCccCCccccCHHHHc---CCCCCCcc--chhhh--------------HHHHHHHHhCCC---------------CC
Confidence            1233457999999999987   56788888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~  236 (454)
                      .+.........+. .....+|...             +..+.+++     .+||+.||.+|+++     +++++||||..
T Consensus       202 ~~~~~~~~~~~i~-~~~~~~p~~~-------------~~~~~~li-----~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~  262 (323)
T cd05615         202 DGEDEDELFQSIM-EHNVSYPKSL-------------SKEAVSIC-----KGLMTKHPSKRLGCGPEGERDIREHAFFRR  262 (323)
T ss_pred             CCCCHHHHHHHHH-hCCCCCCccC-------------CHHHHHHH-----HHHcccCHhhCCCCCCCCHHHHhcCcccCC
Confidence            3333333333333 2223334332             25667888     99999999999984     78999999985


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       263 ~  263 (323)
T cd05615         263 I  263 (323)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.92  E-value=1.3e-25  Score=228.13  Aligned_cols=184  Identities=23%  Similarity=0.286  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCcc-----C--------
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYI-----L--------   69 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~-----~--------   69 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|..+................     .        
T Consensus       102 ~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (376)
T cd05598         102 LARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEID  181 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCccccccccccccccccccccccccccccccccc
Confidence            567889999999999999999999999999999999999999999986432110000000000000     0        


Q ss_pred             ----CCCCCCC-cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          70 ----PPIDSTA-FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        70 ----~~~~~~~-~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                          .++.... ...........+||+.|||||++.   +..++.++  ||||+              ||++|||++|+.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvilyell~G~~  242 (376)
T cd05598         182 RCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLL---RTGYTQLC--DWWSV--------------GVILYEMLVGQP  242 (376)
T ss_pred             cccccchhhhhhhhcccccccccCCCccccCHHHHc---CCCCCcce--eeeec--------------cceeeehhhCCC
Confidence                0000000 000011223568999999999998   67788888  99999              999999877654


Q ss_pred             hhHHHHHHHhhhcCCCCCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC
Q psy7309         145 KTLEELKHNIRRENGPSTGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP  223 (454)
Q Consensus       145 ~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp  223 (454)
                                     |+.+.........+.. .....++..           ...++...++|     .+|+ .+|.+|+
T Consensus       243 ---------------Pf~~~~~~~~~~~i~~~~~~~~~~~~-----------~~~s~~~~~li-----~~l~-~~p~~R~  290 (376)
T cd05598         243 ---------------PFLADTPAETQLKVINWETTLHIPSQ-----------AKLSREASDLI-----LRLC-CGAEDRL  290 (376)
T ss_pred             ---------------CCCCCCHHHHHHHHhccCccccCCCC-----------CCCCHHHHHHH-----HHHh-cCHhhcC
Confidence                           2322222222222211 111122221           11236677788     7776 5999999


Q ss_pred             ---ChhhhhcCcccccC
Q psy7309         224 ---SSEQNLCQPISLEG  237 (454)
Q Consensus       224 ---ta~e~l~hp~f~~~  237 (454)
                         |+.|+++||||...
T Consensus       291 ~~~t~~ell~h~~~~~~  307 (376)
T cd05598         291 GKNGADEIKAHPFFKGI  307 (376)
T ss_pred             CCCCHHHHhCCCCcCCC
Confidence               99999999999853

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0580|consensus

Probab=99.92  E-value=1.9e-26  Score=210.23  Aligned_cols=155  Identities=23%  Similarity=0.332  Sum_probs=129.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.+++|++.||.|+|.+++|||||||+|+|++.+|.+||+|||-+..-                           ...
T Consensus       125 ~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~---------------------------p~~  177 (281)
T KOG0580|consen  125 RAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHA---------------------------PSN  177 (281)
T ss_pred             chhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeec---------------------------CCC
Confidence            57889999999999999999999999999999999999999999988642                           244


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...+.|||.-|.+||+..   +..++.++  |+|++              |++.||++.|.+               ||.
T Consensus       178 kR~tlcgt~dyl~pEmv~---~~~hd~~V--d~w~l--------------gvl~yeflvg~p---------------pFe  223 (281)
T KOG0580|consen  178 KRKTLCGTLDYLPPEMVE---GRGHDKFV--DLWSL--------------GVLCYEFLVGLP---------------PFE  223 (281)
T ss_pred             CceeeecccccCCHhhcC---CCCccchh--hHHHH--------------HHHHHHHHhcCC---------------chh
Confidence            667789999999999998   88999999  99999              999999765544               444


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      .....+..+++. ..+..+|...             +..+.++|     .+||.++|.+|.+..|++.|||....
T Consensus       224 s~~~~etYkrI~-k~~~~~p~~i-------------s~~a~dlI-----~~ll~~~p~~r~~l~~v~~hpwI~a~  279 (281)
T KOG0580|consen  224 SQSHSETYKRIR-KVDLKFPSTI-------------SGGAADLI-----SRLLVKNPIERLALTEVMDHPWIVAN  279 (281)
T ss_pred             hhhhHHHHHHHH-HccccCCccc-------------ChhHHHHH-----HHHhccCccccccHHHHhhhHHHHhc
Confidence            444444455554 3445566443             37888999     99999999999999999999998754

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.92  E-value=3.5e-26  Score=239.77  Aligned_cols=160  Identities=25%  Similarity=0.336  Sum_probs=122.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.+...                       ....
T Consensus       170 ~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~-----------------------~~~~  226 (478)
T PTZ00267        170 EVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDS-----------------------VSLD  226 (478)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCc-----------------------cccc
Confidence            57789999999999999999999999999999999999999999999854321                       1112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      .....+||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.               |+.
T Consensus       227 ~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~~l~el~tg~~---------------Pf~  272 (478)
T PTZ00267        227 VASSFCGTPYYLAPELWE---RKRYSKKA--DMWSL--------------GVILYELLTLHR---------------PFK  272 (478)
T ss_pred             cccccCCCccccCHhHhC---CCCCCcHH--hHHHH--------------HHHHHHHHhCCC---------------CCC
Confidence            234568999999999987   66788888  99999              999999877653               333


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      .......+..+.......+|..             .+....++|     .+||..||++|||+++++.|+|+...
T Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~-------------~s~~~~~li-----~~~L~~dP~~Rps~~~~l~~~~~~~~  329 (478)
T PTZ00267        273 GPSQREIMQQVLYGKYDPFPCP-------------VSSGMKALL-----DPLLSKNPALRPTTQQLLHTEFLKYV  329 (478)
T ss_pred             CCCHHHHHHHHHhCCCCCCCcc-------------CCHHHHHHH-----HHHhccChhhCcCHHHHHhCHHHHHH
Confidence            3333333333332322223322             225677888     99999999999999999999999753

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=9.3e-26  Score=228.05  Aligned_cols=185  Identities=26%  Similarity=0.346  Sum_probs=121.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCc--------cCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY--------ILPPID   73 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~--------~~~~~~   73 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..+...............        ...+..
T Consensus       101 ~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (364)
T cd05599         101 EETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMS  180 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecccccccccccccccccccccccccccccc
Confidence            367889999999999999999999999999999999999999999999754321100000000000        000000


Q ss_pred             CCCcc-----cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHH
Q psy7309          74 STAFY-----SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLE  148 (454)
Q Consensus        74 ~~~~~-----~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~  148 (454)
                      .....     .........+||+.|+|||++.   ...|+.++  ||||+              ||++|||++|.+    
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~el~~G~~----  237 (364)
T cd05599         181 SKRKAETWKRNRRALAYSTVGTPDYIAPEVFL---QTGYNKEC--DWWSL--------------GVIMYEMLVGYP----  237 (364)
T ss_pred             ccccccchhhcccccccccccCccccCHHHHc---CCCCCCee--eeecc--------------hhHHHHhhcCCC----
Confidence            00000     0001123468999999999987   66788888  99999              999999877654    


Q ss_pred             HHHHHhhhcCCCCCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC---
Q psy7309         149 ELKHNIRRENGPSTGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS---  224 (454)
Q Consensus       149 ~l~~~i~~~~~p~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt---  224 (454)
                                 |+.+.........+.. .....+|...           ..++.+.++|     ++||. +|.+|++   
T Consensus       238 -----------Pf~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~s~~~~~li-----~~ll~-~p~~R~~~~~  289 (364)
T cd05599         238 -----------PFCSDNPQETYRKIINWKETLQFPDEV-----------PLSPEAKDLI-----KRLCC-EAERRLGNNG  289 (364)
T ss_pred             -----------CCCCCCHHHHHHHHHcCCCccCCCCCC-----------CCCHHHHHHH-----HHHcc-CHhhcCCCCC
Confidence                       3333322222222221 1222233321           1236777888     99996 9999998   


Q ss_pred             hhhhhcCcccccC
Q psy7309         225 SEQNLCQPISLEG  237 (454)
Q Consensus       225 a~e~l~hp~f~~~  237 (454)
                      ++|++.||||...
T Consensus       290 ~~~ll~h~~~~~~  302 (364)
T cd05599         290 VNEIKSHPFFKGV  302 (364)
T ss_pred             HHHHhcCCCcCCC
Confidence            9999999999853

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>KOG4279|consensus

Probab=99.92  E-value=1.6e-25  Score=228.72  Aligned_cols=164  Identities=27%  Similarity=0.409  Sum_probs=126.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+-.+.+|||+||+|||++.|||||||.+|+|++ ..|.+||+|||.++.+.                         .-.
T Consensus       676 tm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLA-------------------------gin  730 (1226)
T KOG4279|consen  676 TMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLA-------------------------GIN  730 (1226)
T ss_pred             HHHHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhc-------------------------cCC
Confidence            3567899999999999999999999999999997 46889999999998763                         123


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....++.||..|||||++-++ ..+|+..+  ||||+              ||++-||.+|+|+..        +++.| 
T Consensus       731 P~TETFTGTLQYMAPEvIDqG-~RGYG~aA--DIWS~--------------GCT~vEMATGrPPF~--------Elgsp-  784 (1226)
T KOG4279|consen  731 PCTETFTGTLQYMAPEVIDQG-PRGYGKAA--DIWSF--------------GCTMVEMATGRPPFV--------ELGSP-  784 (1226)
T ss_pred             ccccccccchhhhChHhhccC-CcCCCchh--hhhhc--------------cceeEeeccCCCCee--------ecCCh-
Confidence            345578999999999999854 46788888  99999              999999999998542        12222 


Q ss_pred             CCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                           +....++. ...-+.+|+.             .+.+++.||     .+|+..||.+||+|.++|..||++-....
T Consensus       785 -----qAAMFkVGmyKvHP~iPee-------------lsaeak~Fi-----lrcFepd~~~R~sA~~LL~DpFlq~~~kk  841 (1226)
T KOG4279|consen  785 -----QAAMFKVGMYKVHPPIPEE-------------LSAEAKNFI-----LRCFEPDPCDRPSAKDLLQDPFLQHNNKK  841 (1226)
T ss_pred             -----hHhhhhhcceecCCCCcHH-------------HHHHHHHHH-----HHHcCCCcccCccHHHhccCcccccCCCC
Confidence                 11111111 0222333433             248888999     99999999999999999999999877443

>KOG0670|consensus

Probab=99.92  E-value=1.3e-25  Score=223.26  Aligned_cols=185  Identities=22%  Similarity=0.280  Sum_probs=130.5

Q ss_pred             ChhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC-eEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           1 MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         1 ~~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~-vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      |..|+.+++|+..||.+|-.+||+|.||||+|||++...+ +||||||.|....                          
T Consensus       535 ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~--------------------------  588 (752)
T KOG0670|consen  535 IKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFAS--------------------------  588 (752)
T ss_pred             ehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccccccc--------------------------
Confidence            3578899999999999999999999999999999998765 7999999997543                          


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch----hhHHHHHHHhh
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP----KTLEELKHNIR  155 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~----~~~~~l~~~i~  155 (454)
                       ....+...-+.+|+|||+++   +..|+...  |+||+              ||++||+|+|..    .+-.++...+.
T Consensus       589 -eneitPYLVSRFYRaPEIiL---G~~yd~~i--D~WSv--------------gctLYElYtGkIlFpG~TNN~MLrl~m  648 (752)
T KOG0670|consen  589 -ENEITPYLVSRFYRAPEIIL---GLPYDYPI--DTWSV--------------GCTLYELYTGKILFPGRTNNQMLRLFM  648 (752)
T ss_pred             -cccccHHHHHHhccCcceee---cCcccCCc--cceee--------------ceeeEEeeccceecCCCCcHHHHHHHH
Confidence             34556677889999999999   89999999  99999              999999999776    34455555666


Q ss_pred             hcCCCCCCchhhhhhhh---hccCCC--------------C-CCCcccccccc-cccccc--c------cccchhHHHHH
Q psy7309         156 RENGPSTGSNVQKSLQK---FQKSPP--------------S-VYREWRSSFEW-STVRNN--I------KSNFQHFLILI  208 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~---~~~~~~--------------~-~~p~~~~~~~~-~~~~~~--~------~~~~~~~li~~  208 (454)
                      ++.++++..-..+....   |...-.              . .++...+.-++ +.+...  .      .-..+.+||  
T Consensus       649 e~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLL--  726 (752)
T KOG0670|consen  649 ELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVTEREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLL--  726 (752)
T ss_pred             HhcCCCcHHHhhhcchhhhhcccccceEEEeccccccceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHH--
Confidence            77777765433321110   000000              0 00000000000 001110  0      013344555  


Q ss_pred             HHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         209 HQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       209 ~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                         .+||..||++|.|..|||+||||.+
T Consensus       727 ---dkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  727 ---DKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             ---HHHhccChhhcCCHHHHhcCCcccC
Confidence               9999999999999999999999974

>KOG0574|consensus

Probab=99.92  E-value=9.1e-27  Score=218.08  Aligned_cols=164  Identities=23%  Similarity=0.406  Sum_probs=133.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +++-.+++..|.||+|||...-||||||..|||++.+|+.||+|||.|.++.+                         ..
T Consensus       129 ~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTD-------------------------TM  183 (502)
T KOG0574|consen  129 QEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTD-------------------------TM  183 (502)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhh-------------------------hH
Confidence            36778999999999999999999999999999999999999999999987753                         23


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+.+|||+|||||++.   .-+|+.++  |||||              |++..||..|+|+               +
T Consensus       184 AKRNTVIGTPFWMAPEVI~---EIGY~~~A--DIWSL--------------GITaIEMAEG~PP---------------Y  229 (502)
T KOG0574|consen  184 AKRNTVIGTPFWMAPEVIE---EIGYDTKA--DIWSL--------------GITAIEMAEGRPP---------------Y  229 (502)
T ss_pred             HhhCccccCcccccHHHHH---Hhccchhh--hHhhh--------------cchhhhhhcCCCC---------------c
Confidence            4567789999999999998   78899999  99999              9999999887763               3


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      .+-.....+.-+...+++.|.+.   -.|+        ++..+|+     ++||.++|++|.||-++++|||.+....+
T Consensus       230 sDIHPMRAIFMIPT~PPPTF~KP---E~WS--------~~F~DFi-----~~CLiK~PE~R~TA~~L~~H~FiknA~g~  292 (502)
T KOG0574|consen  230 SDIHPMRAIFMIPTKPPPTFKKP---EEWS--------SEFNDFI-----RSCLIKKPEERKTALRLCEHTFIKNAPGC  292 (502)
T ss_pred             ccccccceeEeccCCCCCCCCCh---Hhhh--------hHHHHHH-----HHHhcCCHHHHHHHHHHhhhhhhcCCCcc
Confidence            33222223333344555555443   2354        6667888     99999999999999999999999977665

>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional

Probab=99.92  E-value=5.6e-25  Score=211.45  Aligned_cols=131  Identities=9%  Similarity=0.080  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----ccccEEEE-cCCCCeEeeCCCCCHHHHHHHHHcCCCCcee
Q psy7309         313 SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVM-TRGGSIVTLPHDLRIPFARYLAQNGSIVSMK  387 (454)
Q Consensus       313 ~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~~~~~~~~-d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k  387 (454)
                      ..++.|++++.++|++|||.+|.||+||+++++...    ...+++++ |.+|+.++||||+|+|+||++|.+. ..+.|
T Consensus         8 ~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~-~~~~R   86 (272)
T PRK12294          8 IALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYP-TAATK   86 (272)
T ss_pred             HHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcC-CCCce
Confidence            468899999999999999999999999999986322    13445555 6699999999999999999988754 45679


Q ss_pred             eEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcE-EEcCcccc
Q psy7309         388 RYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNIS-FAPHPRVL  453 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~-i~i~~~~~  453 (454)
                      +||+|+|||+++       +++|+|+|+||.  +..+++|++.+|++++..+|..++. |++||.++
T Consensus        87 l~Y~g~VfR~~~-------~~~Q~GvEliG~--~~~a~~e~l~la~~~l~~~g~~~~~~i~lGh~~~  144 (272)
T PRK12294         87 VAYAGLIIRNNE-------AAVQVGIENYAP--SLANVQQSFKLFIQFIQQQLRDNVHFVVLGHYQL  144 (272)
T ss_pred             EEEeccEeccCC-------CcceeceEEECC--CchhHHHHHHHHHHHHHHhCCCCCcEEEeccHHH
Confidence            999999999863       489999999994  5789999999999999999777654 79999864

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.92  E-value=1.4e-25  Score=228.47  Aligned_cols=184  Identities=24%  Similarity=0.296  Sum_probs=119.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCcccccc-------Ccc---CCC-
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT-------GYI---LPP-   71 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~-------~~~---~~~-   71 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|..+...........+.       ...   ..+ 
T Consensus       102 ~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (382)
T cd05625         102 LARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDPA  181 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCccccccccccccccccccccccccccccccccc
Confidence            578899999999999999999999999999999999999999999986432110000000000       000   000 


Q ss_pred             -----------CCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeec
Q psy7309          72 -----------IDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVY  140 (454)
Q Consensus        72 -----------~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~  140 (454)
                                 ................+||+.|+|||++.   +..|+.++  ||||+              ||++|||+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~~~~~--DiwSl--------------Gvil~ell  242 (382)
T cd05625         182 NCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLL---RTGYTQLC--DWWSV--------------GVILYEML  242 (382)
T ss_pred             cccccccccchhhhhccccccccccccccCcccCCHHHhc---CCCCCCee--eEEec--------------hHHHHHHH
Confidence                       00000001111223568999999999998   67788888  99999              99999987


Q ss_pred             CCchhhHHHHHHHhhhcCCCCCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCC
Q psy7309         141 KDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDP  219 (454)
Q Consensus       141 ~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP  219 (454)
                      +|++               |+.+.........+.. .....+|..           ...++.+.++|     .+|+ .||
T Consensus       243 tG~~---------------Pf~~~~~~~~~~~i~~~~~~~~~p~~-----------~~~s~~~~~li-----~~l~-~~p  290 (382)
T cd05625         243 VGQP---------------PFLAQTPLETQMKVINWQTSLHIPPQ-----------AKLSPEASDLI-----IKLC-RGP  290 (382)
T ss_pred             hCCC---------------CCCCCCHHHHHHHHHccCCCcCCCCc-----------ccCCHHHHHHH-----HHHc-cCH
Confidence            7664               3333222222222221 122222322           12247777888     7776 599


Q ss_pred             CCCCC---hhhhhcCcccccC
Q psy7309         220 SKRPS---SEQNLCQPISLEG  237 (454)
Q Consensus       220 ~~Rpt---a~e~l~hp~f~~~  237 (454)
                      .+|++   ++|+++||||...
T Consensus       291 ~~R~~~~~~~ei~~hp~f~~~  311 (382)
T cd05625         291 EDRLGKNGADEIKAHPFFKTI  311 (382)
T ss_pred             hHcCCCCCHHHHhcCCCcCCc
Confidence            99998   9999999999763

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0611|consensus

Probab=99.92  E-value=1.1e-25  Score=217.96  Aligned_cols=160  Identities=24%  Similarity=0.359  Sum_probs=129.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +++++|+||++|+.|+|.++++|||||.+|||+|.|+++||+|||++-.+                          ..+.
T Consensus       154 EaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly--------------------------~~~k  207 (668)
T KOG0611|consen  154 EARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLY--------------------------ADKK  207 (668)
T ss_pred             HHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhh--------------------------cccc
Confidence            68999999999999999999999999999999999999999999999765                          3456


Q ss_pred             CCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ..+++||+|.|.+||++.   +.+| +..+  |-|||              |+++|.+.-|               ..||
T Consensus       208 fLqTFCGSPLYASPEIvN---G~PY~GPEV--DsWsL--------------GvLLYtLVyG---------------tMPF  253 (668)
T KOG0611|consen  208 FLQTFCGSPLYASPEIVN---GTPYKGPEV--DSWSL--------------GVLLYTLVYG---------------TMPF  253 (668)
T ss_pred             HHHHhcCCcccCCccccC---CCCCCCCcc--chhhH--------------HHHHHHHhhc---------------cccc
Confidence            788899999999999998   6777 4677  99999              8888884322               2355


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSG  241 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~  241 (454)
                      .+......+.++..+.. .=|+..              +++.-||     +|||..||.+|.|.+++..|=|.+-+....
T Consensus       254 DG~Dhk~lvrQIs~GaY-rEP~~P--------------SdA~gLI-----RwmLmVNP~RRATieDiAsHWWvNwgy~~~  313 (668)
T KOG0611|consen  254 DGRDHKRLVRQISRGAY-REPETP--------------SDASGLI-----RWMLMVNPERRATIEDIASHWWVNWGYNMP  313 (668)
T ss_pred             CCchHHHHHHHhhcccc-cCCCCC--------------chHHHHH-----HHHHhcCcccchhHHHHhhhheeecccccc
Confidence            55555555555554333 223332              5566788     999999999999999999999988766543


Q ss_pred             C
Q psy7309         242 L  242 (454)
Q Consensus       242 ~  242 (454)
                      +
T Consensus       314 V  314 (668)
T KOG0611|consen  314 V  314 (668)
T ss_pred             c
Confidence            3

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.92  E-value=2e-25  Score=222.96  Aligned_cols=184  Identities=25%  Similarity=0.367  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..+.....                     ...
T Consensus       105 ~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~---------------------~~~  163 (332)
T cd07857         105 AHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPG---------------------ENA  163 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccc---------------------ccc
Confidence            46788999999999999999999999999999999999999999999985432100                     011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......||+.|+|||++..  ...++.++  |+||+              |+++++++++.+.     ....+...+..
T Consensus       164 ~~~~~~~g~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------Gv~l~~l~~g~~pf~~~~~~~~~~~~~~~  225 (332)
T cd07857         164 GFMTEYVATRWYRAPEIMLS--FQSYTKAI--DVWSV--------------GCILAELLGRKPVFKGKDYVDQLNQILQV  225 (332)
T ss_pred             ccccCcccCccccCcHHHhC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCcCCCCCCHHHHHHHHHHH
Confidence            12334688999999998751  35678888  99999              9999987766542     12223333333


Q ss_pred             cCCCCCCchhhh--------hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh
Q psy7309         157 ENGPSTGSNVQK--------SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN  228 (454)
Q Consensus       157 ~~~p~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~  228 (454)
                      .+.|... ....        ....+.......++..         . ...+....+++     .+||+.||++|||+.|+
T Consensus       226 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~~~~li-----~~~l~~~P~~R~t~~~l  289 (332)
T cd07857         226 LGTPDEE-TLSRIGSPKAQNYIRSLPNIPKKPFESI---------F-PNANPLALDLL-----EKLLAFDPTKRISVEEA  289 (332)
T ss_pred             hCCCCHH-HHHhhhhhhHHHHHHhccccCCcchHhh---------C-CCCCHHHHHHH-----HHHccCCcccCCCHHHH
Confidence            3333211 1110        0011111111111111         0 11235666777     99999999999999999


Q ss_pred             hcCcccccCCCC
Q psy7309         229 LCQPISLEGSSS  240 (454)
Q Consensus       229 l~hp~f~~~~~~  240 (454)
                      +.|||+.+...+
T Consensus       290 l~~~~~~~~~~~  301 (332)
T cd07857         290 LEHPYLAIWHDP  301 (332)
T ss_pred             hcChhhhhhcCc
Confidence            999999877543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.92  E-value=1.5e-25  Score=214.46  Aligned_cols=156  Identities=25%  Similarity=0.329  Sum_probs=117.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||++||++||+|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       102 ~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~-------------------------~~  156 (257)
T cd08223         102 NQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLEN-------------------------QC  156 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecc-------------------------cC
Confidence            46789999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||++.   +..++.++  |+||+              |++++++++++.               |+
T Consensus       157 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~---------------~~  202 (257)
T cd08223         157 DMASTLIGTPYYMSPELFS---NKPYNYKS--DVWAL--------------GCCVYEMATLKH---------------AF  202 (257)
T ss_pred             CccccccCCcCccChhHhc---CCCCCchh--hhHHH--------------HHHHHHHHcCCC---------------CC
Confidence            1233457899999999987   56778888  99999              999999776543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...+.......+..+.....+..             .++...+++     .+||+.||.+|||+.++++||||
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         203 NAKDMNSLVYRIIEGKLPPMPKD-------------YSPELGELI-----ATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             CCCCHHHHHHHHHhcCCCCCccc-------------cCHHHHHHH-----HHHhccCcccCCCHHHHhcCCCC
Confidence            22222222222222221122221             226677888     99999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.5e-25  Score=227.76  Aligned_cols=183  Identities=24%  Similarity=0.316  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCc---cccccCcc----------C
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPL---ARELTGYI----------L   69 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~---~~~~~~~~----------~   69 (454)
                      .++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+|+.+........   ........          .
T Consensus       102 ~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (377)
T cd05629         102 VTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVAV  181 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeeccccccccccccccccccccccccccccccccccccc
Confidence            5778999999999999999999999999999999999999999999974321100000   00000000          0


Q ss_pred             CCCCCCC---------cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeec
Q psy7309          70 PPIDSTA---------FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVY  140 (454)
Q Consensus        70 ~~~~~~~---------~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~  140 (454)
                      .......         ...........+||+.|+|||++.   +..|+.++  ||||+              ||++|||+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvil~ell  242 (377)
T cd05629         182 DSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFL---QQGYGQEC--DWWSL--------------GAIMFECL  242 (377)
T ss_pred             ccccccccchhhhhhhhhcccccccccCCCccccCHHHHc---cCCCCCce--eeEec--------------chhhhhhh
Confidence            0000000         000001122468999999999997   66788888  99999              99999988


Q ss_pred             CCchhhHHHHHHHhhhcCCCCCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCC
Q psy7309         141 KDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDP  219 (454)
Q Consensus       141 ~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP  219 (454)
                      +|.+               |+........+..+.. .....+|...           ..+..+.++|     .+||. +|
T Consensus       243 tG~~---------------Pf~~~~~~~~~~~i~~~~~~~~~p~~~-----------~~s~~~~dli-----~~lL~-~~  290 (377)
T cd05629         243 IGWP---------------PFCSENSHETYRKIINWRETLYFPDDI-----------HLSVEAEDLI-----RRLIT-NA  290 (377)
T ss_pred             cCCC---------------CCCCCCHHHHHHHHHccCCccCCCCCC-----------CCCHHHHHHH-----HHHhc-CH
Confidence            7764               2222222222222221 1222233221           1236677888     99997 77


Q ss_pred             CCC---CChhhhhcCccccc
Q psy7309         220 SKR---PSSEQNLCQPISLE  236 (454)
Q Consensus       220 ~~R---pta~e~l~hp~f~~  236 (454)
                      .+|   +|+.|++.||||..
T Consensus       291 ~~r~~r~~~~~~l~hp~~~~  310 (377)
T cd05629         291 ENRLGRGGAHEIKSHPFFRG  310 (377)
T ss_pred             hhcCCCCCHHHHhcCCCcCC
Confidence            775   59999999999974

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.92  E-value=1.5e-25  Score=220.40  Aligned_cols=185  Identities=22%  Similarity=0.278  Sum_probs=120.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+|+||||+|||++.++.+||+|||++.....                         ..
T Consensus       104 ~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~-------------------------~~  158 (301)
T cd07873         104 HNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSI-------------------------PT  158 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCC-------------------------CC
Confidence            35788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......+++.|+|||++..  ...++.++  ||||+              |+++|||++|++.     ..+.+......
T Consensus       159 ~~~~~~~~~~~y~~PE~~~~--~~~~~~~~--Dv~sl--------------G~~l~el~tg~~~f~~~~~~~~~~~~~~~  220 (301)
T cd07873         159 KTYSNEVVTLWYRPPDILLG--STDYSTQI--DMWGV--------------GCIFYEMSTGRPLFPGSTVEEQLHFIFRI  220 (301)
T ss_pred             CcccccceeecccCcHHHhC--CCCCccHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            12233467899999999862  34567777  99999              9999998776642     11222222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ...|... .+......-. .....++...... . .......++...++|     .+||+.||.+|||++|+++||||..
T Consensus       221 ~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~-~-~~~~~~~~~~~~~li-----~~ml~~dp~~R~t~~eil~h~~f~~  291 (301)
T cd07873         221 LGTPTEE-TWPGILSNEE-FKSYNYPKYRADC-L-HNHAPRLDSDGAELL-----SKLLQFEGRKRISAEEAMKHPYFHC  291 (301)
T ss_pred             cCCCChh-hchhhhcccc-ccccccCcccccc-H-HhhcCCCCHHHHHHH-----HHHhcCCcccCcCHHHHhcCccccc
Confidence            2222211 1111110000 0011111111000 0 000112346677888     9999999999999999999999975


Q ss_pred             CC
Q psy7309         237 GS  238 (454)
Q Consensus       237 ~~  238 (454)
                      ..
T Consensus       292 ~~  293 (301)
T cd07873         292 LG  293 (301)
T ss_pred             cc
Confidence            44

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.92  E-value=3e-25  Score=216.00  Aligned_cols=167  Identities=25%  Similarity=0.324  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||.|||+.||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       103 ~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~-------------------------~~  157 (282)
T cd06643         103 PQIRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTR-------------------------TI  157 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccccccc-------------------------cc
Confidence            46788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .......||..|+|||++...  ....++.++  |+||+              ||++|++++++++              
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~--Dv~sl--------------Gvil~el~~g~~p--------------  207 (282)
T cd06643         158 QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKA--DVWSL--------------GITLIEMAQIEPP--------------  207 (282)
T ss_pred             cccccccccccccCHhhccccCCCCCCCCccc--hhhhH--------------HHHHHHHccCCCC--------------
Confidence            123345789999999998421  234567777  99999              9999998776542              


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                       +....................+..           ...+....++|     .+||+.||.+|||+.++++||||.....
T Consensus       208 -~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~~p~~Rp~~~~il~~~~~~~~~~  270 (282)
T cd06643         208 -HHELNPMRVLLKIAKSEPPTLAQP-----------SRWSSEFKDFL-----KKCLEKNVDARWTTTQLLQHPFVTVNSN  270 (282)
T ss_pred             -ccccCHHHHHHHHhhcCCCCCCCc-----------cccCHHHHHHH-----HHHccCChhhCcCHHHHhcCCCEeccCC
Confidence             211111111111111111111111           11125667888     9999999999999999999999997655


Q ss_pred             C
Q psy7309         240 S  240 (454)
Q Consensus       240 ~  240 (454)
                      .
T Consensus       271 ~  271 (282)
T cd06643         271 K  271 (282)
T ss_pred             C
Confidence            4

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0614|consensus

Probab=99.92  E-value=8.5e-26  Score=224.09  Aligned_cols=170  Identities=25%  Similarity=0.315  Sum_probs=137.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++..+++|+.|||++|||.|||||+|.+++.+|.+||.|||+|+.+.                          .+.
T Consensus       521 tarF~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~--------------------------~g~  574 (732)
T KOG0614|consen  521 TARFYVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIG--------------------------SGR  574 (732)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhc--------------------------cCC
Confidence            467788899999999999999999999999999999999999999999874                          355


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...++||||.|.|||+++   +.+.+.++  |+|||              |+++||+++|.|               ||.
T Consensus       575 KTwTFcGTpEYVAPEIIL---nKGHD~av--DyWaL--------------GIli~ELL~G~p---------------PFs  620 (732)
T KOG0614|consen  575 KTWTFCGTPEYVAPEIIL---NKGHDRAV--DYWAL--------------GILIYELLTGSP---------------PFS  620 (732)
T ss_pred             ceeeecCCcccccchhhh---ccCcchhh--HHHHH--------------HHHHHHHHcCCC---------------CCC
Confidence            677899999999999999   78889999  99999              999999887765               666


Q ss_pred             CchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         163 GSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       163 ~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                      +.+...+...+.++ ....+|...             ...+.++|     +++...+|.+|..     +.++-+|.||. 
T Consensus       621 ~~dpmktYn~ILkGid~i~~Pr~I-------------~k~a~~Li-----k~LCr~~P~ERLG~~~~gI~DIkkH~Wf~-  681 (732)
T KOG0614|consen  621 GVDPMKTYNLILKGIDKIEFPRRI-------------TKTATDLI-----KKLCRDNPTERLGYQKGGINDIKKHRWFE-  681 (732)
T ss_pred             CCchHHHHHHHHhhhhhhhccccc-------------chhHHHHH-----HHHHhcCcHhhhccccCChHHHHhhhhhh-
Confidence            66555555544432 334455442             25667888     9999999999997     78999999997 


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                             .+||+-+......||
T Consensus       682 -------gfdweglr~~~L~pP  696 (732)
T KOG0614|consen  682 -------GFDWEGLRSRTLPPP  696 (732)
T ss_pred             -------cCChhhhhhccCCCC
Confidence                   467776665554444

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.92  E-value=1.3e-25  Score=218.39  Aligned_cols=179  Identities=27%  Similarity=0.369  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       101 ~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~-------------------------~~  155 (285)
T cd07861         101 ELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGI-------------------------PV  155 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCC-------------------------Cc
Confidence            35788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......+++.|+|||++..  ...++.++  |+||+              ||+++++++|++.     ....+...+..
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~il~~l~tg~~~~~~~~~~~~~~~~~~~  217 (285)
T cd07861         156 RVYTHEVVTLWYRAPEVLLG--SPRYSTPV--DIWSI--------------GTIFAEMATKKPLFHGDSEIDQLFRIFRI  217 (285)
T ss_pred             ccccCCcccccccChHHhcC--CCCcCcHH--HHHHH--------------HHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence            12334577899999998762  34567777  99999              9999998776642     22233333332


Q ss_pred             cCCCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...+..... .......+.    ..++..... .+.. .....+++..++|     ++||+.||.+|||+.+++.||||
T Consensus       218 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~-~~~~~~~~~~~li-----~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         218 LGTPTEDVWPGVTSLPDYK----NTFPKWKKG-SLRS-AVKNLDEDGLDLL-----EKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             hCCCChhhhhcchhhHHHH----hhccccCcc-hhHH-hcCCCCHHHHHHH-----HHHhcCChhhCCCHHHHhcCCCC
Confidence            222211110 000011110    001111000 0000 0012346677888     99999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.92  E-value=2.2e-25  Score=227.09  Aligned_cols=185  Identities=24%  Similarity=0.275  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCC------------
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP------------   70 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~------------   70 (454)
                      .++.+++||+.||+|||++||+||||||+|||++.++.+||+|||++..+...........+......            
T Consensus       102 ~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (381)
T cd05626         102 LARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDVS  181 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCccccccccc
Confidence            57889999999999999999999999999999999999999999998643211000000000000000            


Q ss_pred             ---------CCCCCCc-ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeec
Q psy7309          71 ---------PIDSTAF-YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVY  140 (454)
Q Consensus        71 ---------~~~~~~~-~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~  140 (454)
                               .+..... ..........+||+.|+|||++.   +..|+.++  ||||+              ||++|||+
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~ell  242 (381)
T cd05626         182 NCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLL---RKGYTQLC--DWWSV--------------GVILFEML  242 (381)
T ss_pred             ccccccccchhhccccccccccccccccCCccccCHHHHc---CCCCCCcc--ceeeh--------------hhHHHHHH
Confidence                     0000000 00011123568999999999997   56788888  99999              99999987


Q ss_pred             CCchhhHHHHHHHhhhcCCCCCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcC--C
Q psy7309         141 KDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLN--H  217 (454)
Q Consensus       141 ~~~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~--~  217 (454)
                      +|.+               |+...........+. ......+|...           ..++++.+||     .+||.  .
T Consensus       243 tG~~---------------Pf~~~~~~~~~~~i~~~~~~~~~~~~~-----------~~s~~~~dli-----~~ll~~~~  291 (381)
T cd05626         243 VGQP---------------PFLAPTPTETQLKVINWENTLHIPPQV-----------KLSPEAVDLI-----TKLCCSAE  291 (381)
T ss_pred             hCCC---------------CCcCCCHHHHHHHHHccccccCCCCCC-----------CCCHHHHHHH-----HHHccCcc
Confidence            7654               222222111111111 11222233221           1236778888     88554  4


Q ss_pred             CCCCCCChhhhhcCcccccC
Q psy7309         218 DPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       218 dP~~Rpta~e~l~hp~f~~~  237 (454)
                      +|.+|+|++|++.||||...
T Consensus       292 ~~~~R~~~~~~l~hp~f~~~  311 (381)
T cd05626         292 ERLGRNGADDIKAHPFFSEV  311 (381)
T ss_pred             cccCCCCHHHHhcCcccCCC
Confidence            55569999999999999853

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.92  E-value=3.2e-25  Score=221.50  Aligned_cols=172  Identities=20%  Similarity=0.329  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++++.|++.||.|||++ +|+||||||+|||++.++.+||+|||++.....                           
T Consensus       104 ~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~---------------------------  156 (331)
T cd06649         104 ILGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---------------------------  156 (331)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccc---------------------------
Confidence            5789999999999999986 699999999999999999999999999875421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh----hHHHHHHHhhhc
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK----TLEELKHNIRRE  157 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~----~~~~l~~~i~~~  157 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              ||++||+++|+.+    ...++...+...
T Consensus       157 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~tg~~p~~~~~~~~~~~~~~~~  217 (331)
T cd06649         157 SMANSFVGTRSYMSPERLQ---GTHYSVQS--DIWSM--------------GLSLVELAIGRYPIPPPDAKELEAIFGRP  217 (331)
T ss_pred             cccccCCCCcCcCCHhHhc---CCCCCchH--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHhccc
Confidence            1223457999999999998   66788888  99999              9999997776542    122222221110


Q ss_pred             CCCCCCc---------------------------hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHH
Q psy7309         158 NGPSTGS---------------------------NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQ  210 (454)
Q Consensus       158 ~~p~~~~---------------------------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~  210 (454)
                      .......                           ........+.....+..+.            ...+++..+||    
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~li----  281 (331)
T cd06649         218 VVDGEEGEPHSISPRPRPPGRPVSGHGMDSRPAMAIFELLDYIVNEPPPKLPN------------GVFTPDFQEFV----  281 (331)
T ss_pred             ccccccCCccccCcccccccccccccccccccchhHHHHHHHHHhCCCcCCCC------------ccccHHHHHHH----
Confidence            0000000                           0000000011111111110            11235667777    


Q ss_pred             HhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         211 QKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       211 ~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       .+||++||++|||++|+++||||...
T Consensus       282 -~~~L~~~P~~Rpt~~ell~h~~~~~~  307 (331)
T cd06649         282 -NKCLIKNPAERADLKMLMNHTFIKRS  307 (331)
T ss_pred             -HHHccCCcccCCCHHHHhcChHHhhc
Confidence             99999999999999999999999853

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0584|consensus

Probab=99.92  E-value=1.1e-25  Score=229.15  Aligned_cols=158  Identities=31%  Similarity=0.417  Sum_probs=125.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEccC-CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~~-~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.|++|||.||.|||++.  |||||||++|||++.+ |.|||+|+|||+....                        
T Consensus       143 kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~------------------------  198 (632)
T KOG0584|consen  143 KAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRK------------------------  198 (632)
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhc------------------------
Confidence            358899999999999999986  9999999999999875 7999999999996542                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                         ....+.+|||.+||||+.-    ..|+..+  ||||+              |.++.||.++..              
T Consensus       199 ---s~aksvIGTPEFMAPEmYE----E~YnE~V--DVYaF--------------GMCmLEMvT~eY--------------  241 (632)
T KOG0584|consen  199 ---SHAKSVIGTPEFMAPEMYE----ENYNELV--DVYAF--------------GMCMLEMVTSEY--------------  241 (632)
T ss_pred             ---cccceeccCccccChHHHh----hhcchhh--hhhhh--------------hHHHHHHHhccC--------------
Confidence               2334589999999999986    7899999  99999              999999887554              


Q ss_pred             CCCCC-chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTG-SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+.. .+...+.+++..+.+   |..+.         +...+++++||     .+||.. .+.|+||.|+|+||||...
T Consensus       242 -PYsEC~n~AQIYKKV~SGiK---P~sl~---------kV~dPevr~fI-----ekCl~~-~~~R~sa~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  242 -PYSECTNPAQIYKKVTSGIK---PAALS---------KVKDPEVREFI-----EKCLAT-KSERLSAKELLKDPFFDED  302 (632)
T ss_pred             -ChhhhCCHHHHHHHHHcCCC---HHHhh---------ccCCHHHHHHH-----HHHhcC-chhccCHHHHhhChhhccc
Confidence             2222 223334444443332   23322         33458999999     999999 9999999999999999986


Q ss_pred             CC
Q psy7309         238 SS  239 (454)
Q Consensus       238 ~~  239 (454)
                      ..
T Consensus       303 ~g  304 (632)
T KOG0584|consen  303 GG  304 (632)
T ss_pred             cc
Confidence            43

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.92  E-value=1.7e-25  Score=218.61  Aligned_cols=156  Identities=29%  Similarity=0.417  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+||+++.++.++|+|||++.....                          .
T Consensus       102 ~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~--------------------------~  155 (285)
T cd05605         102 ERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPE--------------------------G  155 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCC--------------------------C
Confidence            35788999999999999999999999999999999999999999999874321                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  |+||+              |+++||+++|+.               |+
T Consensus       156 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Diws~--------------G~~l~el~~g~~---------------pf  201 (285)
T cd05605         156 ETIRGRVGTVGYMAPEVVK---NERYTFSP--DWWGL--------------GCLIYEMIEGKS---------------PF  201 (285)
T ss_pred             CccccccCCCCccCcHHhc---CCCCCccc--cchhH--------------HHHHHHHHHCCC---------------CC
Confidence            1223457999999999997   56788888  99999              999999766554               22


Q ss_pred             CCchhh----hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCc
Q psy7309         162 TGSNVQ----KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQP  232 (454)
Q Consensus       162 ~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp  232 (454)
                      .+....    .....+. .....++..             .+....+++     .+||+.||++||     +++++++||
T Consensus       202 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~li-----~~~l~~~P~~R~~~~~~~~~~l~~~~  262 (285)
T cd05605         202 RQRKEKVKREEVERRVK-EDQEEYSEK-------------FSEAARSIC-----RQLLTKDPGFRLGCRGEGAEEVKAHP  262 (285)
T ss_pred             CCCchhhHHHHHHHHhh-hcccccCcc-------------cCHHHHHHH-----HHHccCCHHHhcCCCCCCHHHHhcCc
Confidence            211111    1111111 112222222             225667888     999999999999     899999999


Q ss_pred             cccc
Q psy7309         233 ISLE  236 (454)
Q Consensus       233 ~f~~  236 (454)
                      ||..
T Consensus       263 ~~~~  266 (285)
T cd05605         263 FFRT  266 (285)
T ss_pred             CccC
Confidence            9985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.92  E-value=2.5e-25  Score=224.15  Aligned_cols=188  Identities=28%  Similarity=0.351  Sum_probs=122.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                          .
T Consensus       118 ~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~--------------------------~  171 (353)
T cd07850         118 ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--------------------------S  171 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCC--------------------------C
Confidence            35788999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              ||++++|++|+..     ........+..
T Consensus       172 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~~l~~l~~g~~pf~~~~~~~~~~~~~~~  232 (353)
T cd07850         172 FMMTPYVVTRYYRAPEVIL---GMGYKENV--DIWSV--------------GCIMGEMIRGTVLFPGTDHIDQWNKIIEQ  232 (353)
T ss_pred             CCCCCCcccccccCHHHHh---CCCCCCch--hhHhH--------------HHHHHHHHHCCCCCCCCCHHHHHHHHHHh
Confidence            1233457899999999997   67788888  99999              8888887665531     12233333333


Q ss_pred             cCCCCCCch--hhhhhhhhcc-C---CCCCCCcccccccccccc---ccccccchhHHHHHHHHhhhcCCCCCCCCChhh
Q psy7309         157 ENGPSTGSN--VQKSLQKFQK-S---PPSVYREWRSSFEWSTVR---NNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ  227 (454)
Q Consensus       157 ~~~p~~~~~--~~~~~~~~~~-~---~~~~~p~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e  227 (454)
                      .+.|.....  .......+.. .   ....+....+...|....   .....+...++|     .+||+.||++|||+.|
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~L~~dP~~R~t~~e  307 (353)
T cd07850         233 LGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLL-----SKMLVIDPEKRISVDD  307 (353)
T ss_pred             cCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhCcccccCcccccccccchhHHHHHH-----HHHcCCChhhCcCHHH
Confidence            333322100  0000111100 0   000111110000010000   112234566777     9999999999999999


Q ss_pred             hhcCcccccCCC
Q psy7309         228 NLCQPISLEGSS  239 (454)
Q Consensus       228 ~l~hp~f~~~~~  239 (454)
                      +|.||||.....
T Consensus       308 iL~~~~~~~~~~  319 (353)
T cd07850         308 ALQHPYINVWYD  319 (353)
T ss_pred             HhcChhHhhccC
Confidence            999999985443

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.92  E-value=1.9e-25  Score=219.71  Aligned_cols=188  Identities=23%  Similarity=0.281  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++|++|+||||+||+++.++.+||+|||++........                     ...
T Consensus       119 ~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~---------------------~~~  177 (310)
T cd07865         119 SEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKN---------------------SKP  177 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcccccCCcc---------------------cCC
Confidence            46889999999999999999999999999999999999999999999986532110                     011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh----HHHHHHHhhhc
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT----LEELKHNIRRE  157 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~----~~~l~~~i~~~  157 (454)
                      .......++..|+|||.+..  ...++.++  |+||+              |+++||++++++..    .......+...
T Consensus       178 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~~l~el~t~~~~~~~~~~~~~~~~~~~~  239 (310)
T cd07865         178 NRYTNRVVTLWYRPPELLLG--ERDYGPPI--DMWGA--------------GCIMAEMWTRSPIMQGNTEQHQLTLISQL  239 (310)
T ss_pred             CCccCcccCccccCcHHhcC--CcccCchh--hhHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            12234578899999998761  33467777  99999              99999977655411    11111111211


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .++.+....... ..+.......++..........+.....++.+.++|     .+||..||.+|||++|+++||||
T Consensus       240 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~dli-----~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         240 CGSITPEVWPGV-DKLELFKKMELPQGQKRKVKERLKPYVKDPHALDLI-----DKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             hCCCChhhcccc-cchhhhhhccCCCccchhhHHhcccccCCHHHHHHH-----HHHhcCChhhccCHHHHhcCCCC
Confidence            221111110000 000000001111110000001111112235566777     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.92  E-value=2.5e-25  Score=225.99  Aligned_cols=164  Identities=24%  Similarity=0.296  Sum_probs=118.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++++||+|||+|.....                        ....
T Consensus       143 ~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~------------------------~~~~  198 (371)
T cd05622         143 WARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK------------------------EGMV  198 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCc------------------------CCcc
Confidence            5678999999999999999999999999999999999999999999875421                        1111


Q ss_pred             CCcCcccccceeccccccccc-cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGV-KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~-~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .....+||+.|+|||++.... ...|+.++  ||||+              ||++|||++|.+               |+
T Consensus       199 ~~~~~~gt~~y~aPE~l~~~~~~~~~~~~~--DiwSl--------------Gvilyell~G~~---------------Pf  247 (371)
T cd05622         199 RCDTAVGTPDYISPEVLKSQGGDGYYGREC--DWWSV--------------GVFLYEMLVGDT---------------PF  247 (371)
T ss_pred             cccCcccCccccCHHHHhccCCCccCCCcc--ceeeh--------------hHHHHHHHhCCC---------------CC
Confidence            234568999999999986321 23477788  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC--CCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK--RPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~--Rpta~e~l~hp~f~~~  237 (454)
                      ...+......++... ....+|..           ...+..+.++|     .+||..+|.+  |++++|+++||||...
T Consensus       248 ~~~~~~~~~~~i~~~~~~~~~~~~-----------~~~s~~~~~li-----~~~L~~~~~r~~r~~~~ei~~h~~~~~~  310 (371)
T cd05622         248 YADSLVGTYSKIMNHKNSLTFPDD-----------NDISKEAKNLI-----CAFLTDREVRLGRNGVEEIKRHLFFKND  310 (371)
T ss_pred             CCCCHHHHHHHHHcCCCcccCCCc-----------CCCCHHHHHHH-----HHHcCChhhhcCCCCHHHHhcCcccCCC
Confidence            333333333333322 22233332           11236777888     9999844433  7899999999999763

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.92  E-value=1.6e-25  Score=217.73  Aligned_cols=161  Identities=20%  Similarity=0.300  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.||+||||||+||+++.++.+||+|||++.....                          .
T Consensus        95 ~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~--------------------------~  148 (277)
T cd05607          95 ERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKD--------------------------G  148 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCC--------------------------C
Confidence            35678899999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  |+||+              ||++||+++|..+.....           
T Consensus       149 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------Gv~l~el~~g~~p~~~~~-----------  198 (277)
T cd05607         149 KTITQRAGTNGYMAPEILK---EEPYSYPV--DWFAM--------------GCSIYEMVAGRTPFKDHK-----------  198 (277)
T ss_pred             ceeeccCCCCCccCHHHHc---cCCCCCch--hHHHH--------------HHHHHHHHhCCCCCCCCc-----------
Confidence            1223357899999999987   55688888  99999              999999776654211000           


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta----~e~l~hp~f~~  236 (454)
                      ............. .....++.            ...++...+++     .+||+.||.+|||+    ++++.||||..
T Consensus       199 ~~~~~~~~~~~~~-~~~~~~~~------------~~~~~~~~~li-----~~~L~~~P~~R~~~~~~~~~~~~h~~f~~  259 (277)
T cd05607         199 EKVAKEELKRRTL-EDEVKFEH------------QNFTEESKDIC-----RLFLAKKPEDRLGSREKNDDPRKHEFFKT  259 (277)
T ss_pred             chhhHHHHHHHhh-cccccccc------------ccCCHHHHHHH-----HHHhccCHhhCCCCccchhhhhcChhhcC
Confidence            0000001111111 11111111            11236677888     99999999999999    66779999975

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.91  E-value=2.2e-25  Score=218.76  Aligned_cols=164  Identities=22%  Similarity=0.402  Sum_probs=119.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       118 ~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~-------------------------~~  172 (292)
T cd06658         118 EQIATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSK-------------------------EV  172 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhccc-------------------------cc
Confidence            46789999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++.   +..++.++  |+||+              |++++|+++|..               |+
T Consensus       173 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------Gvil~el~~g~~---------------p~  218 (292)
T cd06658         173 PKRKSLVGTPYWMAPEVIS---RLPYGTEV--DIWSL--------------GIMVIEMIDGEP---------------PY  218 (292)
T ss_pred             ccCceeecCccccCHHHHc---cCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1223457899999999987   56678778  99999              999999776553               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      ........+..+........+..           ...+....+++     .+||..||.+|||++|+++||||.....+
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~~P~~Rpt~~~il~~~~~~~~~~~  281 (292)
T cd06658         219 FNEPPLQAMRRIRDNLPPRVKDS-----------HKVSSVLRGFL-----DLMLVREPSQRATAQELLQHPFLKLAGPP  281 (292)
T ss_pred             CCCCHHHHHHHHHhcCCCccccc-----------cccCHHHHHHH-----HHHccCChhHCcCHHHHhhChhhhccCCc
Confidence            22211111222211111111111           11235566777     99999999999999999999999976654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.91  E-value=1.8e-25  Score=218.43  Aligned_cols=158  Identities=29%  Similarity=0.416  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+||+++.++.++|+|||++.....                          .
T Consensus       102 ~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~--------------------------~  155 (285)
T cd05630         102 GRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE--------------------------G  155 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCC--------------------------C
Confidence            35788999999999999999999999999999999999999999999864311                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++.   +..++.++  |+||+              |+++|+|++|+++.               
T Consensus       156 ~~~~~~~g~~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~~l~~l~~g~~Pf---------------  201 (285)
T cd05630         156 QTIKGRVGTVGYMAPEVVK---NERYTFSP--DWWAL--------------GCLLYEMIAGQSPF---------------  201 (285)
T ss_pred             ccccCCCCCccccChHHHc---CCCCCCcc--ccHHH--------------HHHHHHHHhCCCCC---------------
Confidence            1223457999999999998   56788888  99999              99999977665422               


Q ss_pred             CCch---hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCcc
Q psy7309         162 TGSN---VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPI  233 (454)
Q Consensus       162 ~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~  233 (454)
                      ....   .......+.......++..             .++...+|+     ++||+.||.+|||     ++|+++|||
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~R~s~~~~~~~~~~~h~~  263 (285)
T cd05630         202 QQRKKKIKREEVERLVKEVQEEYSEK-------------FSPDARSLC-----KMLLCKDPKERLGCQGGGAREVKEHPL  263 (285)
T ss_pred             CCCCccchHHHHHhhhhhhhhhcCcc-------------CCHHHHHHH-----HHHhhcCHHHccCCCCCchHHHHcChh
Confidence            1100   0011111111111112221             225667888     9999999999999     899999999


Q ss_pred             cccC
Q psy7309         234 SLEG  237 (454)
Q Consensus       234 f~~~  237 (454)
                      |.+.
T Consensus       264 ~~~~  267 (285)
T cd05630         264 FKQI  267 (285)
T ss_pred             hhcc
Confidence            9863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.91  E-value=3.8e-25  Score=213.63  Aligned_cols=159  Identities=26%  Similarity=0.419  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                         ...
T Consensus       112 ~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~-------------------------~~~  166 (272)
T cd06637         112 WIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR-------------------------TVG  166 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceeccc-------------------------ccc
Confidence            5678999999999999999999999999999999999999999999875421                         112


Q ss_pred             CCcCcccccceeccccccccc--cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGV--KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~--~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......|++.|+|||++....  ...|+.++  |+||+              ||++||+++|..+.              
T Consensus       167 ~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~--Dv~sl--------------Gv~l~el~~g~~p~--------------  216 (272)
T cd06637         167 RRNTFIGTPYWMAPEVIACDENPDATYDFKS--DLWSL--------------GITAIEMAEGAPPL--------------  216 (272)
T ss_pred             cCCcccccccccCHhHhccccCcCCCCCchh--hHHHH--------------HHHHHHHHhCCCCc--------------
Confidence            334567999999999986221  34577778  99999              99999987765422              


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                       ....................+.            ...+....+|+     .+||..||.+|||+.|++.||||
T Consensus       217 -~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~li-----~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         217 -CDMHPMRALFLIPRNPAPRLKS------------KKWSKKFQSFI-----ESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             -cccCHHHHHHHHhcCCCCCCCC------------CCcCHHHHHHH-----HHHcCCChhhCCCHHHHhhCCCC
Confidence             1111111111111111111110            01125566777     99999999999999999999997

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>KOG4236|consensus

Probab=99.91  E-value=1.8e-25  Score=222.43  Aligned_cols=155  Identities=28%  Similarity=0.388  Sum_probs=126.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .+.++.|||.||.|||-+||+|+||||+|||+....   ++||||||.|+.+.+                          
T Consensus       666 TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgE--------------------------  719 (888)
T KOG4236|consen  666 TKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGE--------------------------  719 (888)
T ss_pred             HHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecch--------------------------
Confidence            467889999999999999999999999999998765   699999999998753                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCc-h-hhHHHHHHHhhhcC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDR-P-KTLEELKHNIRREN  158 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~-~-~~~~~l~~~i~~~~  158 (454)
                      .....+.+|||.|+|||++.   +.+|+.+.  ||||+              |+|+|--+.|. | ...+++...|.   
T Consensus       720 ksFRrsVVGTPAYLaPEVLr---nkGyNrSL--DMWSV--------------GVIiYVsLSGTFPFNEdEdIndQIQ---  777 (888)
T KOG4236|consen  720 KSFRRSVVGTPAYLAPEVLR---NKGYNRSL--DMWSV--------------GVIIYVSLSGTFPFNEDEDINDQIQ---  777 (888)
T ss_pred             hhhhhhhcCCccccCHHHHh---hccccccc--cceee--------------eEEEEEEecccccCCCccchhHHhh---
Confidence            44677899999999999999   78999999  99999              99999844433 2 22233333333   


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                                       +...-+|..    +|+.+     ++.+.+||     ..+|+..-.+|.|.++.|.|||++..
T Consensus       778 -----------------NAaFMyPp~----PW~ei-----s~~AidlI-----n~LLqVkm~kRysvdk~lsh~Wlq~y  825 (888)
T KOG4236|consen  778 -----------------NAAFMYPPN----PWSEI-----SPEAIDLI-----NNLLQVKMRKRYSVDKSLSHPWLQDY  825 (888)
T ss_pred             -----------------ccccccCCC----chhhc-----CHHHHHHH-----HHHHHHHHHHhcchHhhccchhhhcc
Confidence                             445556665    58654     36677999     99999999999999999999999853

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.91  E-value=7.6e-25  Score=214.07  Aligned_cols=180  Identities=23%  Similarity=0.363  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||+++....                         ..
T Consensus       103 ~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~-------------------------~~  157 (291)
T cd07870         103 YNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSI-------------------------PS  157 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCC-------------------------CC
Confidence            35788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh------hHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK------TLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~------~~~~l~~~i~  155 (454)
                      .......+++.|+|||++..  ...++.++  |+||+              |++++++++|.+.      ..+.+.....
T Consensus       158 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~~l~~l~~g~~~f~~~~~~~~~~~~~~~  219 (291)
T cd07870         158 QTYSSEVVTLWYRPPDVLLG--ATDYSSAL--DIWGA--------------GCIFIEMLQGQPAFPGVSDVFEQLEKIWT  219 (291)
T ss_pred             CCCCCccccccccCCceeec--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCchhHHHHHHHHHH
Confidence            12234467899999999861  23567777  99999              9999987776542      1223323222


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCcccc---ccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRS---SFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      ..+.|.....  .............++...+   ...|+.+   ...+...+++     .+||+.||++|||++|++.||
T Consensus       220 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll-----~~~l~~dp~~R~t~~~~l~h~  289 (291)
T cd07870         220 VLGVPTEDTW--PGVSKLPNYKPEWFLPCKPQQLRVVWKRL---SRPPKAEDLA-----SQMLMMFPKDRISAQDALLHP  289 (291)
T ss_pred             HcCCCChhhh--hhhhhcccccchhccccCCcchhhhcccc---CCChHHHHHH-----HHHhCcCcccCcCHHHHhcCC
Confidence            2222322210  0000110000000000000   0012111   1135667888     999999999999999999999


Q ss_pred             cc
Q psy7309         233 IS  234 (454)
Q Consensus       233 ~f  234 (454)
                      ||
T Consensus       290 ~~  291 (291)
T cd07870         290 YF  291 (291)
T ss_pred             CC
Confidence            97

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.91  E-value=3.8e-25  Score=221.21  Aligned_cols=154  Identities=23%  Similarity=0.302  Sum_probs=110.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +++.+++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       174 ~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~-----------------------~~~  230 (338)
T cd05102         174 EDLICYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKD-----------------------PDY  230 (338)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEECCCCccceEEEcCCCcEEEeecccccccccC-----------------------cch
Confidence            357889999999999999999999999999999999999999999999754211                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   +..|+.++  ||||+              ||++||+++ |..               |
T Consensus       231 ~~~~~~~~~~~y~aPE~~~---~~~~~~~s--Diwsl--------------G~il~el~~~g~~---------------p  276 (338)
T cd05102         231 VRKGSARLPLKWMAPESIF---DKVYTTQS--DVWSF--------------GVLLWEIFSLGAS---------------P  276 (338)
T ss_pred             hcccCCCCCccccCcHHhh---cCCCCccc--CHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1122345678899999997   66788888  99999              999999764 432               2


Q ss_pred             CCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.... .....+........|..             .++...+++     .+||+.||++|||+.|+++
T Consensus       277 f~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         277 YPGVQINEEFCQRLKDGTRMRAPEN-------------ATPEIYRIM-----LACWQGDPKERPTFSALVE  329 (338)
T ss_pred             CCCCCccHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHccCChhhCcCHHHHHH
Confidence            2221111 11222222222222222             225667788     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.91  E-value=8.5e-25  Score=218.73  Aligned_cols=191  Identities=27%  Similarity=0.366  Sum_probs=122.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.......                      ...
T Consensus       106 ~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~----------------------~~~  163 (336)
T cd07849         106 DHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEH----------------------DHT  163 (336)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeeccccc----------------------ccc
Confidence            3578899999999999999999999999999999999999999999987542210                      011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...++.++  |+||+              |+++++|++|++..     ...+......
T Consensus       164 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dvwsl--------------Gvil~el~~G~~~f~~~~~~~~~~~~~~~  225 (336)
T cd07849         164 GFLTEYVATRWYRAPEIMLN--SKGYTKAI--DIWSV--------------GCILAEMLSNRPLFPGKDYLHQLNLILGV  225 (336)
T ss_pred             CCcCCcCcCCCccChHHhhC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            12344678999999998751  34577778  99999              99999977766421     1111111111


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.|.. ..................+. .....|+...+. .++.+.+++     .+||+.||++|||+.|+++||||..
T Consensus       226 ~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~li-----~~~l~~dP~~Rpt~~e~l~hp~~~~  297 (336)
T cd07849         226 LGTPSQ-EDLNCIISLRARNYIKSLPF-KPKVPWNKLFPN-ADPKALDLL-----DKMLTFNPHKRITVEEALAHPYLEQ  297 (336)
T ss_pred             cCCCCH-HHHHHhhchhhhhHHhhcCc-CCcccHHHHhcc-cCcHHHHHH-----HHHcCCChhhCcCHHHHhcCccccc
Confidence            122211 11111100000000000000 001122221111 246677888     9999999999999999999999987


Q ss_pred             CCCC
Q psy7309         237 GSSS  240 (454)
Q Consensus       237 ~~~~  240 (454)
                      ...+
T Consensus       298 ~~~~  301 (336)
T cd07849         298 YHDP  301 (336)
T ss_pred             cCCC
Confidence            6543

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.91  E-value=5.7e-25  Score=219.79  Aligned_cols=164  Identities=21%  Similarity=0.290  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                        ....
T Consensus       103 ~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~------------------------~~~~  158 (332)
T cd05623         103 MARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME------------------------DGTV  158 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheeccc------------------------CCcc
Confidence            5788999999999999999999999999999999999999999999875421                        1111


Q ss_pred             CCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .....+||+.|+|||++...  ....|+.++  ||||+              ||++|||++|+.               |
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~--DvwSl--------------Gvil~ell~g~~---------------P  207 (332)
T cd05623         159 QSSVAVGTPDYISPEILQAMEDGKGKYGPEC--DWWSL--------------GVCMYEMLYGET---------------P  207 (332)
T ss_pred             eecccccCccccCHHHHhccccCCCCCCCcC--CEEee--------------HHHHHHHhcCCC---------------C
Confidence            22345799999999998521  134577788  99999              999999877654               3


Q ss_pred             CCCchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC--CCChhhhhcCccccc
Q psy7309         161 STGSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK--RPSSEQNLCQPISLE  236 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~--Rpta~e~l~hp~f~~  236 (454)
                      +..........++... ....+|...          ...++.+.+++     ++||..+|.+  |+|++|+++||||..
T Consensus       208 f~~~~~~~~~~~i~~~~~~~~~p~~~----------~~~s~~~~~li-----~~ll~~~~~r~~r~~~~~~~~h~~f~~  271 (332)
T cd05623         208 FYAESLVETYGKIMNHKERFQFPAQV----------TDVSEDAKDLI-----RRLICSREHRLGQNGIEDFKQHPFFTG  271 (332)
T ss_pred             CCCCCHHHHHHHHhCCCccccCCCcc----------ccCCHHHHHHH-----HHHccChhhhcCCCCHHHHhCCCCcCC
Confidence            3333333333333322 122233321          11236778888     9999765544  689999999999974

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.91  E-value=3.1e-25  Score=216.69  Aligned_cols=159  Identities=29%  Similarity=0.402  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++.....                          .
T Consensus       102 ~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~--------------------------~  155 (285)
T cd05632         102 ERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPE--------------------------G  155 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCC--------------------------C
Confidence            46788999999999999999999999999999999999999999998864321                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++.   +..++.++  |+||+              |+++|++++|..+               +
T Consensus       156 ~~~~~~~g~~~~~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~g~~P---------------~  201 (285)
T cd05632         156 ESIRGRVGTVGYMAPEVLN---NQRYTLSP--DYWGL--------------GCLIYEMIEGQSP---------------F  201 (285)
T ss_pred             CcccCCCCCcCccChHHhc---CCCCCccc--chHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223457999999999997   56788888  99999              9999997765532               2


Q ss_pred             CCchhh----hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCc
Q psy7309         162 TGSNVQ----KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQP  232 (454)
Q Consensus       162 ~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp  232 (454)
                      ......    ....++. .....++..             .++...+|+     .+||+.||++|||     +++++.|+
T Consensus       202 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~li-----~~~l~~~P~~R~~~~~~~~~~l~~~~  262 (285)
T cd05632         202 RGRKEKVKREEVDRRVL-ETEEVYSAK-------------FSEEAKSIC-----KMLLTKDPKQRLGCQEEGAGEVKRHP  262 (285)
T ss_pred             CCCCHHHHHHHHHHhhh-ccccccCcc-------------CCHHHHHHH-----HHHccCCHhHcCCCcccChHHHHcCh
Confidence            111111    1111111 111112211             225667888     9999999999999     88999999


Q ss_pred             ccccCCC
Q psy7309         233 ISLEGSS  239 (454)
Q Consensus       233 ~f~~~~~  239 (454)
                      ||.....
T Consensus       263 ~~~~~~~  269 (285)
T cd05632         263 FFRNMNF  269 (285)
T ss_pred             hhhcCCH
Confidence            9987543

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=6.1e-25  Score=210.94  Aligned_cols=158  Identities=25%  Similarity=0.371  Sum_probs=115.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++++++|++.||.|||+.||+||||||+||+++.++.++|+|||++.......                      ....
T Consensus       105 ~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~----------------------~~~~  162 (263)
T cd06625         105 VTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTIC----------------------SSGT  162 (263)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceeccccc----------------------cccc
Confidence            568899999999999999999999999999999999999999999987542100                      0111


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......|+..|+|||++.   +..++.++  ||||+              |+++||+++|+.+               +.
T Consensus       163 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~g~~p---------------~~  208 (263)
T cd06625         163 GMKSVTGTPYWMSPEVIS---GEGYGRKA--DVWSV--------------GCTVVEMLTEKPP---------------WA  208 (263)
T ss_pred             cccCCCcCccccCcceec---cCCCCchh--hhHHH--------------HHHHHHHHhCCCC---------------cc
Confidence            123456889999999998   55677788  99999              9999998776542               11


Q ss_pred             Cchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         163 GSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       163 ~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .........+.. ......++..             .+....++|     ++||..||.+|||+.|+++||||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         209 EFEAMAAIFKIATQPTNPQLPSH-------------VSPDARNFL-----RRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             ccchHHHHHHHhccCCCCCCCcc-------------CCHHHHHHH-----HHHhhcCcccCCCHHHHhhCCCC
Confidence            111111111111 1112222222             225667788     99999999999999999999997

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.91  E-value=6.7e-25  Score=215.70  Aligned_cols=163  Identities=24%  Similarity=0.404  Sum_probs=118.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       115 ~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~-------------------------~~  169 (296)
T cd06655         115 AQIAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITP-------------------------EQ  169 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhccc-------------------------cc
Confidence            46789999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.   ...++.++  |+||+              ||++|++++|..               |+
T Consensus       170 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------Gvil~~lltg~~---------------pf  215 (296)
T cd06655         170 SKRSTMVGTPYWMAPEVVT---RKAYGPKV--DIWSL--------------GIMAIEMVEGEP---------------PY  215 (296)
T ss_pred             ccCCCcCCCccccCcchhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1223457899999999987   56677788  99999              999999777654               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...........+.......+...           ...++...++|     ++||..||.+|||+.++++||||.....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~dp~~Rpt~~~il~~~~~~~~~~  277 (296)
T cd06655         216 LNENPLRALYLIATNGTPELQNP-----------EKLSPIFRDFL-----NRCLEMDVEKRGSAKELLQHPFLKLAKP  277 (296)
T ss_pred             CCCCHHHHHHHHHhcCCcccCCc-----------ccCCHHHHHHH-----HHHhhcChhhCCCHHHHhhChHhhhccc
Confidence            22111111111111111111110           11225566777     9999999999999999999999986553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.91  E-value=5.2e-25  Score=217.40  Aligned_cols=185  Identities=25%  Similarity=0.279  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+||+++.++.+||+|||++.....                         ..
T Consensus       108 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~-------------------------~~  162 (309)
T cd07845         108 SQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGL-------------------------PA  162 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCC-------------------------cc
Confidence            46788999999999999999999999999999999999999999999875431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      ...+...+++.|+|||++..  ...++.++  |+||+              |+++||+++|.+..     ...+......
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dvwsl--------------G~il~el~~g~~~f~~~~~~~~~~~~~~~  224 (309)
T cd07845         163 KPMTPKVVTLWYRAPELLLG--CTTYTTAI--DMWAV--------------GCILAELLAHKPLLPGKSEIEQLDLIIQL  224 (309)
T ss_pred             CCCCcccccccccChhhhcC--CCCcCchH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            12233456889999999862  34577788  99999              99999987766421     1222222221


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ...|... .+. .+..........++.... ..+.... ...++...++|     .+||+.||++|||++|++.||||..
T Consensus       225 ~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~li-----~~ml~~dp~~R~t~~~il~h~~f~~  295 (309)
T cd07845         225 LGTPNES-IWP-GFSDLPLVGKFTLPKQPY-NNLKHKF-PWLSEAGLRLL-----NFLLMYDPKKRATAEEALESSYFKE  295 (309)
T ss_pred             cCCCChh-hch-hhhcccccccccccCCCC-CchHHhc-cccCHHHHHHH-----HHHhcCChhhCcCHHHHhcChhhcc
Confidence            1222111 000 000000000111111000 0011100 11246667788     9999999999999999999999986


Q ss_pred             CC
Q psy7309         237 GS  238 (454)
Q Consensus       237 ~~  238 (454)
                      ..
T Consensus       296 ~~  297 (309)
T cd07845         296 KP  297 (309)
T ss_pred             CC
Confidence            54

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG4717|consensus

Probab=99.91  E-value=9.9e-25  Score=216.74  Aligned_cols=183  Identities=23%  Similarity=0.283  Sum_probs=138.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      -++++|+||+.|+.|+|+..+|||||||+|+.+- .-|-|||.|||++-.+                          ..+
T Consensus       119 La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf--------------------------~PG  172 (864)
T KOG4717|consen  119 LAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKF--------------------------QPG  172 (864)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccC--------------------------CCc
Confidence            4789999999999999999999999999998664 5688999999998755                          345


Q ss_pred             CCCcCcccccceeccccccccccccccc-cCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQ-FTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~-~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...++.||+..|.|||+++   +..|+. .+  |||||              |+|+|-+..|++               |
T Consensus       173 ~kL~TsCGSLAYSAPEILL---GDsYDAPAV--DiWSL--------------GVILyMLVCGq~---------------P  218 (864)
T KOG4717|consen  173 KKLTTSCGSLAYSAPEILL---GDSYDAPAV--DIWSL--------------GVILYMLVCGQP---------------P  218 (864)
T ss_pred             chhhcccchhhccCchhhh---cCccCCcch--hhhHH--------------HHHHHHHHhCCC---------------c
Confidence            6788899999999999999   777775 45  99999              999998655554               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      |...+-.+.+-.+- .-++..|..+             +.++++||     .+||..||++|.|.+++..|+|++.+-..
T Consensus       219 FqeANDSETLTmIm-DCKYtvPshv-------------S~eCrdLI-----~sMLvRdPkkRAslEeI~s~~Wlq~~D~~  279 (864)
T KOG4717|consen  219 FQEANDSETLTMIM-DCKYTVPSHV-------------SKECRDLI-----QSMLVRDPKKRASLEEIVSTSWLQAGDRG  279 (864)
T ss_pred             cccccchhhhhhhh-cccccCchhh-------------hHHHHHHH-----HHHHhcCchhhccHHHHhccccccCCCCC
Confidence            44433333333332 3445555553             48889999     99999999999999999999999987665


Q ss_pred             CCCccCccccccCCCCCCCCcchHHHHHHHHH
Q psy7309         241 GLSVLGSEQLLTCDHIPPPLVGETVLQDMVRQ  272 (454)
Q Consensus       241 ~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~  272 (454)
                      .-.        .-+++.-.++.+++-..++.+
T Consensus       280 ~sT--------~iPLvsr~~L~ee~Ha~IIq~  303 (864)
T KOG4717|consen  280 LST--------AIPLVSRHHLPEEAHATIIQQ  303 (864)
T ss_pred             ccc--------cCceeehhhCChHHHHHHHHH
Confidence            322        234444445566655555543

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.91  E-value=9.6e-25  Score=213.57  Aligned_cols=182  Identities=25%  Similarity=0.337  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++|++|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       106 ~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~-------------------------~~  160 (293)
T cd07843         106 SEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGS-------------------------PL  160 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccC-------------------------Cc
Confidence            46789999999999999999999999999999999999999999999875432                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......+++.|+|||.+..  ...++.++  |+||+              |+++++|++|.+.     ....+...+..
T Consensus       161 ~~~~~~~~~~~~~aPE~~~~--~~~~~~~~--Di~sl--------------G~~l~~l~~g~~~f~~~~~~~~~~~~~~~  222 (293)
T cd07843         161 KPYTQLVVTLWYRAPELLLG--AKEYSTAI--DMWSV--------------GCIFAELLTKKPLFPGKSEIDQLNKIFKL  222 (293)
T ss_pred             cccccccccccccCchhhcC--Cccccchh--hHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            22234567889999999862  23456777  99999              9999997776542     22222222232


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccc-cccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNI-KSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...|.... +... ..+.......+... ....+....... .++...++|     ++||+.||++|||+.|++.||||
T Consensus       223 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~li-----~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         223 LGTPTEKI-WPGF-SELPGAKKKTFTKY-PYNQLRKKFPALSLSDNGFDLL-----NRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             hCCCchHH-HHHh-hccchhcccccccc-cchhhhccccccCCChHHHHHH-----HHHhccCccccCCHHHHhcCCCC
Confidence            23332211 1100 00000000000000 000011111111 245667888     99999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>KOG0607|consensus

Probab=99.91  E-value=7.7e-25  Score=206.80  Aligned_cols=179  Identities=27%  Similarity=0.406  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC---eEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~---vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ++.++.++|+.||.|||.+||.||||||+|||-...++   ||||||.++..+.....          .+ +       .
T Consensus       177 EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~----------~s-p-------a  238 (463)
T KOG0607|consen  177 EASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNND----------CS-P-------A  238 (463)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCC----------CC-C-------C
Confidence            68899999999999999999999999999999987765   79999999875422110          00 0       2


Q ss_pred             CCCCCcCcccccceecccccc--ccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          80 HDTSHTGQVGTALYAAPELDS--HGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~--~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                      ......+.+|+..|||||+.-  -+....|+..+  |.|||              |+++|-|+.|-++....        
T Consensus       239 stP~L~tPvGSAEfMAPEVVd~fv~qA~~YDKrC--DlwSL--------------GvIlYImLsGYpPFvG~--------  294 (463)
T KOG0607|consen  239 STPELLTPVGSAEFMAPEVVDVFVDQATFYDKRC--DLWSL--------------GVILYIMLSGYPPFVGH--------  294 (463)
T ss_pred             CCccccCcccchhhcchhHHhhhccccccccccc--cHHHH--------------HHHHHHHHhCCCCccCc--------
Confidence            234566789999999999963  12356889999  99999              66666655544322110        


Q ss_pred             CCCCCCch--------hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         158 NGPSTGSN--------VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       158 ~~p~~~~~--------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+...+++        ..+.+..++ .+.+.||+.    +|..+     +.++++++     ..+|.+||.+|.+|.+++
T Consensus       295 Cg~dCGWdrGe~Cr~CQ~~LFesIQ-EGkYeFPdk----dWahI-----S~eakdli-----snLlvrda~~rlsa~~vl  359 (463)
T KOG0607|consen  295 CGADCGWDRGEVCRVCQNKLFESIQ-EGKYEFPDK----DWAHI-----SSEAKDLI-----SNLLVRDAKQRLSAAQVL  359 (463)
T ss_pred             cCCcCCccCCCccHHHHHHHHHHHh-ccCCcCChh----hhHHh-----hHHHHHHH-----HHHHhccHHhhhhhhhcc
Confidence            01111111        122333444 677888876    68654     47778999     999999999999999999


Q ss_pred             cCcccccCC
Q psy7309         230 CQPISLEGS  238 (454)
Q Consensus       230 ~hp~f~~~~  238 (454)
                      +|||+....
T Consensus       360 nhPw~~~~~  368 (463)
T KOG0607|consen  360 NHPWVQRCA  368 (463)
T ss_pred             CCccccccc
Confidence            999998644

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.91  E-value=1.1e-24  Score=211.75  Aligned_cols=159  Identities=27%  Similarity=0.411  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+|+||||+||+++.++.++|+|||++.....                         ...
T Consensus       122 ~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~-------------------------~~~  176 (282)
T cd06636         122 WIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR-------------------------TVG  176 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhhhc-------------------------ccc
Confidence            4678999999999999999999999999999999999999999999875431                         111


Q ss_pred             CCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......|++.|+|||++...  ....++.++  |+||+              |+++||++++.++.              
T Consensus       177 ~~~~~~~~~~y~aPE~l~~~~~~~~~~~~~~--Dvwsl--------------G~~l~el~~g~~p~--------------  226 (282)
T cd06636         177 RRNTFIGTPYWMAPEVIACDENPDATYDYRS--DIWSL--------------GITAIEMAEGAPPL--------------  226 (282)
T ss_pred             CCCcccccccccCHhhcCcccCcCcCCCccc--chhHH--------------HHHHHHHHhCCCCc--------------
Confidence            23346789999999998622  134677777  99999              99999987765422              


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                       ......................            ...+....++|     .+||..||.+|||+.|+++||||
T Consensus       227 -~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~li-----~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         227 -CDMHPMRALFLIPRNPPPKLKS------------KKWSKKFIDFI-----EGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             -cccCHHhhhhhHhhCCCCCCcc------------cccCHHHHHHH-----HHHhCCChhhCcCHHHHhcCCCC
Confidence             1111111111111111111110            11225566777     99999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.91  E-value=1.1e-24  Score=217.78  Aligned_cols=165  Identities=21%  Similarity=0.282  Sum_probs=115.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..+..                        ....
T Consensus       103 ~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~------------------------~~~~  158 (331)
T cd05597         103 MARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLA------------------------DGTV  158 (331)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCC------------------------CCCc
Confidence            5788999999999999999999999999999999999999999999875421                        0111


Q ss_pred             CCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .....+||+.|+|||++...  ....++.++  ||||+              ||++|||++|+.               |
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~--Diwsl--------------G~~l~el~~g~~---------------P  207 (331)
T cd05597         159 QSNVAVGTPDYISPEILQAMEDGKGRYGPEC--DWWSL--------------GVCMYEMLYGET---------------P  207 (331)
T ss_pred             cccceeccccccCHHHHhhccccccCCCCcc--eeehh--------------hhHHHHHhhCCC---------------C
Confidence            12235799999999998621  124567777  99999              999999877654               2


Q ss_pred             CCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC--CCChhhhhcCcccccC
Q psy7309         161 STGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK--RPSSEQNLCQPISLEG  237 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~--Rpta~e~l~hp~f~~~  237 (454)
                      +...........+.. .....++....          ..++.+.+++     ++||..++++  |++++++++||||...
T Consensus       208 f~~~~~~~~~~~i~~~~~~~~~~~~~~----------~~~~~~~~li-----~~ll~~~~~r~~r~~~~~~l~hp~~~~~  272 (331)
T cd05597         208 FYAESLVETYGKIMNHKEHFQFPPDVT----------DVSEEAKDLI-----RRLICSPETRLGRNGLQDFKDHPFFEGI  272 (331)
T ss_pred             CCCCCHHHHHHHHHcCCCcccCCCccC----------CCCHHHHHHH-----HHHccCcccccCCCCHHHHhcCCCCCCC
Confidence            222222222222221 11122222211          1236677888     9988764444  7899999999999753

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>KOG0696|consensus

Probab=99.91  E-value=6e-25  Score=213.37  Aligned_cols=171  Identities=29%  Similarity=0.365  Sum_probs=142.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.+|+.||-+||++|||.||||.+|||++..|++||+|||+++.-.                         -.+.
T Consensus       451 ~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni-------------------------~~~~  505 (683)
T KOG0696|consen  451 VAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI-------------------------FDGV  505 (683)
T ss_pred             hhhhhhHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccc-------------------------cCCc
Confidence            467789999999999999999999999999999999999999999998421                         2344


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...+.+|||-|+|||+++   ..+|+.++  |.||+              |+++|||+.|.+               |+.
T Consensus       506 TTkTFCGTPdYiAPEIi~---YqPYgksv--DWWa~--------------GVLLyEmlaGQp---------------PFd  551 (683)
T KOG0696|consen  506 TTKTFCGTPDYIAPEIIA---YQPYGKSV--DWWAF--------------GVLLYEMLAGQP---------------PFD  551 (683)
T ss_pred             ceeeecCCCcccccceEE---ecccccch--hHHHH--------------HHHHHHHHcCCC---------------CCC
Confidence            566799999999999999   89999999  99999              999999877654               555


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCcccccC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLEG  237 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~~  237 (454)
                      +....+.++.+. .....+|+.++             .++.++.     +..|...|.+|...     +++-.||||.  
T Consensus       552 GeDE~elF~aI~-ehnvsyPKslS-------------kEAv~ic-----kg~ltK~P~kRLGcg~~ge~di~~H~FFR--  610 (683)
T KOG0696|consen  552 GEDEDELFQAIM-EHNVSYPKSLS-------------KEAVAIC-----KGLLTKHPGKRLGCGPEGERDIREHPFFR--  610 (683)
T ss_pred             CCCHHHHHHHHH-HccCcCccccc-------------HHHHHHH-----HHHhhcCCccccCCCCccccchhhCcchh--
Confidence            555555555544 45566777643             7777888     99999999999874     6888999997  


Q ss_pred             CCCCCCccCccccccCCCCCCC
Q psy7309         238 SSSGLSVLGSEQLLTCDHIPPP  259 (454)
Q Consensus       238 ~~~~~~~~~~~~ll~~~~~~~~  259 (454)
                            .+||+.+...+..||.
T Consensus       611 ------~iDWek~E~~eiqPPf  626 (683)
T KOG0696|consen  611 ------RIDWEKLERREIQPPF  626 (683)
T ss_pred             ------hccHHHHhhccCCCCC
Confidence                  4788888888877774

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.91  E-value=1.5e-24  Score=212.15  Aligned_cols=165  Identities=26%  Similarity=0.356  Sum_probs=117.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++||||||+||+++.++.+||+|||++.....                         ..
T Consensus       110 ~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~-------------------------~~  164 (292)
T cd06644         110 PQIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVK-------------------------TL  164 (292)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccc-------------------------cc
Confidence            46789999999999999999999999999999999999999999998864321                         11


Q ss_pred             CCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .......|++.|+|||++..+  ....|+.++  |+||+              ||++|||++|+++.             
T Consensus       165 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~--Dv~sl--------------G~il~el~~g~~p~-------------  215 (292)
T cd06644         165 QRRDSFIGTPYWMAPEVVMCETMKDTPYDYKA--DIWSL--------------GITLIEMAQIEPPH-------------  215 (292)
T ss_pred             cccceecCCccccCceeeccccccCCCCCchh--hhHhH--------------HHHHHHHhcCCCCC-------------
Confidence            223345788999999998521  134567777  99999              99999987766421             


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                        ..........++.....+..+..           ...+....+++     ++||+.||++||+++|+++||||....
T Consensus       216 --~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~~p~~Rp~~~~il~~~~~~~~~  276 (292)
T cd06644         216 --HELNPMRVLLKIAKSEPPTLSQP-----------SKWSMEFRDFL-----KTALDKHPETRPSAAQLLEHPFVSSVT  276 (292)
T ss_pred             --ccccHHHHHHHHhcCCCccCCCC-----------cccCHHHHHHH-----HHHhcCCcccCcCHHHHhcCccccccc
Confidence              11111111222221211111111           11124566777     999999999999999999999997544

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.91  E-value=1.2e-24  Score=212.62  Aligned_cols=162  Identities=27%  Similarity=0.367  Sum_probs=114.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       128 ~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~-------------------------~~  182 (291)
T cd06639         128 AMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTS-------------------------TR  182 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccchhccc-------------------------cc
Confidence            35788999999999999999999999999999999999999999999875431                         11


Q ss_pred             CCCcCcccccceeccccccccc--cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGV--KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~--~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .......|+..|+|||++....  ...++.++  |+||+              ||++||+++|+++              
T Consensus       183 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~--Di~sl--------------Gvi~~el~~g~~p--------------  232 (291)
T cd06639         183 LRRNTSVGTPFWMAPEVIACEQQYDYSYDARC--DVWSL--------------GITAIELGDGDPP--------------  232 (291)
T ss_pred             ccccCccCCccccChhhhcCCCCcccccCCcc--chHHH--------------HHHHHHHhhCCCC--------------
Confidence            1123357899999999976221  12356677  99999              9999998877642              


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                       +........+..+.......+...           ........+++     .+||+.||.+|||+.|+++||||+
T Consensus       233 -~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         233 -LFDMHPVKTLFKIPRNPPPTLLHP-----------EKWCRSFNHFI-----SQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             -CCCCcHHHHHHHHhcCCCCCCCcc-----------cccCHHHHHHH-----HHHhhcChhhCcCHHHHhcCcccC
Confidence             111111111111211111111100           11124566777     999999999999999999999984

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.91  E-value=1.4e-24  Score=209.14  Aligned_cols=162  Identities=23%  Similarity=0.410  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+||+++.++.+||+|||.++........                   ....
T Consensus       106 ~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~-------------------~~~~  166 (267)
T cd06628         106 TLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLS-------------------TKTN  166 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCccccccccc-------------------CCcc
Confidence            357889999999999999999999999999999999999999999998855311000                   0111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.   +..++.++  |+||+              |++++++++|..               |+
T Consensus       167 ~~~~~~~~~~~y~~pe~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~---------------p~  212 (267)
T cd06628         167 GARPSLQGSVFWMAPEVVK---QTSYTRKA--DIWSL--------------GCLVVEMLTGKH---------------PF  212 (267)
T ss_pred             ccccccCCCcCccChhHhc---cCCCCchh--hhHHH--------------HHHHHHHhhCCC---------------CC
Confidence            2233456889999999987   56677778  99999              999999877653               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...................++..             ......++|     ++||+.||.+|||+.|+++||||
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         213 PDCTQLQAIFKIGENASPEIPSN-------------ISSEAIDFL-----EKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             CCccHHHHHHHHhccCCCcCCcc-------------cCHHHHHHH-----HHHccCCchhCcCHHHHhhCCCC
Confidence            22221122222221222222222             125667788     99999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.91  E-value=1.5e-24  Score=207.24  Aligned_cols=156  Identities=31%  Similarity=0.494  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       101 ~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~-------------------------~~  155 (256)
T cd08529         101 DQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSD-------------------------NT  155 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccC-------------------------cc
Confidence            35788999999999999999999999999999999999999999999875431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||++.   +..++.++  |+||+              |++++++++|+.               |+
T Consensus       156 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p~  201 (256)
T cd08529         156 NFANTIVGTPYYLSPELCE---DKPYNEKS--DVWAL--------------GVVLYECCTGKH---------------PF  201 (256)
T ss_pred             chhhccccCccccCHHHhc---CCCCCCcc--chHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1223457889999999988   56678888  99999              999999877653               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...+.......+.......++..             ......+++     .+||+.+|++||++.++++|||.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         202 DANNQGALILKIIRGVFPPVSQM-------------YSQQLAQLI-----DQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             CCCCHHHHHHHHHcCCCCCCccc-------------cCHHHHHHH-----HHHccCCcccCcCHHHHhhCCCC
Confidence            22222222222222222222221             125567787     99999999999999999999984

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.91  E-value=1.4e-24  Score=210.98  Aligned_cols=183  Identities=28%  Similarity=0.385  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||+.|++|+||||+||+++.++.++|+|||++.....                        ...
T Consensus        99 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~------------------------~~~  154 (286)
T cd07832          99 AQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSE------------------------EEP  154 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccC------------------------CCC
Confidence            46789999999999999999999999999999999999999999999875431                        011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......||..|+|||++..  ...++.++  ||||+              |++++|++++.+.     ....+...+..
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~~l~~l~tg~~~~~~~~~~~~~~~~~~~  216 (286)
T cd07832         155 RLYSHQVATRWYRAPELLYG--ARKYDPGV--DLWAV--------------GCIFAELLNGSPLFPGENDIEQLAIVFRT  216 (286)
T ss_pred             CccccccCcccccCceeeec--cccCCchh--HHHHH--------------HHHHHHHHcCCcCcCCCCHHHHHHHHHHH
Confidence            12334578999999999862  34467777  99999              9999998776542     11222222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ...|... .+.. ......-....++.... ..|....+.. .....++|     .+||..||.+|||++++++||||.
T Consensus       217 ~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~li-----~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         217 LGTPNEE-TWPG-LTSLPDYNKITFPESKP-IPLEEIFPDA-SPEALDLL-----KGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             cCCCChH-HHhh-ccCcchhhcccCCCCCc-chHHHhCCCc-cHHHHHHH-----HHHhccChhhCCCHHHHhhCcCcC
Confidence            2222110 0000 00000000111111100 1122111122 25666777     999999999999999999999984

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.91  E-value=1.2e-24  Score=213.72  Aligned_cols=162  Identities=25%  Similarity=0.394  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++..++.|++.||.|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       116 ~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~-------------------------~~  170 (296)
T cd06654         116 GQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP-------------------------EQ  170 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhccc-------------------------cc
Confidence            36788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||.+.   +..++.++  |+||+              ||++|++++|.++               +
T Consensus       171 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~s~--------------Gvil~~l~~g~~p---------------f  216 (296)
T cd06654         171 SKRSTMVGTPYWMAPEVVT---RKAYGPKV--DIWSL--------------GIMAIEMIEGEPP---------------Y  216 (296)
T ss_pred             cccCcccCCccccCHHHHc---CCCCCccc--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223457899999999987   56677788  99999              9999998776542               2


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ....................+..           ........+++     .+||..||++|||+.+++.||||....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~~p~~Rpt~~eil~~~~~~~~~  277 (296)
T cd06654         217 LNENPLRALYLIATNGTPELQNP-----------EKLSAIFRDFL-----NRCLDMDVEKRGSAKELLQHQFLKIAK  277 (296)
T ss_pred             CCCCHHHhHHHHhcCCCCCCCCc-----------cccCHHHHHHH-----HHHCcCCcccCcCHHHHhhChhhhccC
Confidence            22111111111111111111100           11224556677     999999999999999999999998643

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.91  E-value=1.3e-24  Score=209.40  Aligned_cols=162  Identities=29%  Similarity=0.451  Sum_probs=112.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       106 ~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~-------------------------~~  160 (267)
T cd06645         106 SQIAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITA-------------------------TI  160 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccC-------------------------cc
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++.......++.++  |+||+              ||++|+|+++.++.               
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~--DvwSl--------------G~il~~l~~~~~p~---------------  209 (267)
T cd06645         161 AKRKSFIGTPYWMAPEVAAVERKGGYNQLC--DIWAV--------------GITAIELAELQPPM---------------  209 (267)
T ss_pred             cccccccCcccccChhhhccccCCCCCchh--hhHHH--------------HHHHHHHhcCCCCc---------------
Confidence            123345789999999997532245577777  99999              99999987765421               


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      ............... ....+.......        .+....+++     .+||+.||++|||++++++|||
T Consensus       210 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~li-----~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         210 FDLHPMRALFLMTKS-NFQPPKLKDKMK--------WSNSFHHFV-----KMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             ccccchhhHHhhhcc-CCCCCcccccCC--------CCHHHHHHH-----HHHccCCchhCcCHHHHhcCCC
Confidence            111100001111000 011111000001        124556777     9999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.91  E-value=2.2e-24  Score=216.54  Aligned_cols=178  Identities=31%  Similarity=0.416  Sum_probs=120.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                           
T Consensus       118 ~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~---------------------------  170 (343)
T cd07851         118 DHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDD---------------------------  170 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccccc---------------------------
Confidence            46889999999999999999999999999999999999999999999875421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                       ......+|..|+|||++..  ...++.++  |+||+              |+++|++++|++.     ....+...+..
T Consensus       171 -~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dvwsl--------------Gv~l~elltg~~pf~~~~~~~~~~~i~~~  231 (343)
T cd07851         171 -EMTGYVATRWYRAPEIMLN--WMHYNQTV--DIWSV--------------GCIMAELLTGKTLFPGSDHIDQLKRIMNL  231 (343)
T ss_pred             -cccCCcccccccCHHHHhC--CCCCCchH--hHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHh
Confidence             1234577889999999862  23567777  99999              9999997776542     12222222222


Q ss_pred             cCCCCCCch-------hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTGSN-------VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~~~-------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      ...|.....       .......+.......+...         . ...++.+.++|     .+||+.||.+|||+.|++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~-~~~s~~l~dli-----~~~l~~~P~~Rpt~~ell  296 (343)
T cd07851         232 VGTPDEELLQKISSESARNYIQSLPQMPKKDFKEV---------F-SGANPLAIDLL-----EKMLVLDPDKRITAAEAL  296 (343)
T ss_pred             cCCCCHHHHhhccchhHHHHHHhccccCCCCHHHH---------h-ccCCHHHHHHH-----HHhCCCChhhCCCHHHHh
Confidence            111111000       0000011111111111111         0 01235667777     999999999999999999


Q ss_pred             cCcccccCCCC
Q psy7309         230 CQPISLEGSSS  240 (454)
Q Consensus       230 ~hp~f~~~~~~  240 (454)
                      +||||.....+
T Consensus       297 ~h~~~~~~~~~  307 (343)
T cd07851         297 AHPYLAEYHDP  307 (343)
T ss_pred             cCCCccccCCC
Confidence            99999976655

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.90  E-value=1.7e-24  Score=207.93  Aligned_cols=165  Identities=27%  Similarity=0.387  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||.|||++||+|+||||+||+++.++.+||+|||++........                     ....
T Consensus       103 ~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~---------------------~~~~  161 (267)
T cd06610         103 IIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGD---------------------RTRK  161 (267)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCcc---------------------cccc
Confidence            5788999999999999999999999999999999999999999999986542110                     0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      .....+|+..|+|||++..  ...++.++  |+||+              |++++++++|..+               +.
T Consensus       162 ~~~~~~~~~~y~~Pe~~~~--~~~~~~~~--Dv~sl--------------G~i~~~l~~g~~p---------------~~  208 (267)
T cd06610         162 VRKTFVGTPCWMAPEVMEQ--VHGYDFKA--DIWSF--------------GITAIELATGAAP---------------YS  208 (267)
T ss_pred             ccccccCChhhcChHHHcc--ccCcCccc--chHhH--------------hHHHHHHHhCCCC---------------cc
Confidence            2344578999999999872  23677788  99999              9999998776542               22


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ..+..+...+........++...   .+     ...++...+++     .+||+.||.+|||++|+++||||
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~---~~-----~~~~~~~~~li-----~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         209 KYPPMKVLMLTLQNDPPSLETGA---DY-----KKYSKSFRKMI-----SLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             ccChhhhHHHHhcCCCCCcCCcc---cc-----ccccHHHHHHH-----HHHcCCChhhCcCHHHHhhCCCC
Confidence            22222222222222222222221   00     11225566777     99999999999999999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.1e-24  Score=210.81  Aligned_cols=162  Identities=28%  Similarity=0.425  Sum_probs=120.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||+++....                         ..
T Consensus        98 ~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~-------------------------~~  152 (274)
T cd06609          98 TYIAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTS-------------------------TM  152 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecc-------------------------cc
Confidence            46889999999999999999999999999999999999999999999976532                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||.+.   +..++.++  ||||+              |+++|++++|.++               +
T Consensus       153 ~~~~~~~~~~~y~~PE~~~---~~~~~~~s--Dv~sl--------------G~il~~l~tg~~p---------------~  198 (274)
T cd06609         153 SKRNTFVGTPFWMAPEVIK---QSGYDEKA--DIWSL--------------GITAIELAKGEPP---------------L  198 (274)
T ss_pred             cccccccCCccccChhhhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------c
Confidence            2233457889999999998   55688888  99999              9999998776542               1


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...........+.....+..+..            ..++...+++     .+||..||.+|||++++++||||.....
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~l-----~~~l~~~p~~Rpt~~~il~~~~~~~~~~  259 (274)
T cd06609         199 SDLHPMRVLFLIPKNNPPSLEGN------------KFSKPFKDFV-----SLCLNKDPKERPSAKELLKHKFIKKAKK  259 (274)
T ss_pred             ccCchHHHHHHhhhcCCCCCccc------------ccCHHHHHHH-----HHHhhCChhhCcCHHHHhhChhhcCCCc
Confidence            11111112222222222222211            0225566777     9999999999999999999999986543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.1e-24  Score=209.86  Aligned_cols=161  Identities=26%  Similarity=0.384  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||+|+||+++.++.+||+|||++.....                         ..
T Consensus       113 ~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~-------------------------~~  167 (275)
T cd06608         113 EWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDS-------------------------TL  167 (275)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceeccc-------------------------ch
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .......||..|+|||++...  ....++.++  ||||+              |++++++++|.++              
T Consensus       168 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~--Dv~sl--------------G~il~~l~~g~~p--------------  217 (275)
T cd06608         168 GRRNTFIGTPYWMAPEVIACDEQPDASYDARS--DVWSL--------------GITAIELADGKPP--------------  217 (275)
T ss_pred             hhhcCccccccccCHhHhcccccccCCccccc--cHHHh--------------HHHHHHHHhCCCC--------------
Confidence            223345789999999997521  134566777  99999              9999998776542              


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                       +...........+...........           ...+....+++     .+||..||++|||++|+++|||+
T Consensus       218 -~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         218 -LCDMHPMRALFKIPRNPPPTLKSP-----------ENWSKKFNDFI-----SECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             -ccccchHHHHHHhhccCCCCCCch-----------hhcCHHHHHHH-----HHHhhcChhhCcCHHHHhcCCCC
Confidence             211111112222221211111110           11125566777     99999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.90  E-value=1.2e-24  Score=208.00  Aligned_cols=158  Identities=27%  Similarity=0.425  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||+.|++|+||+|+||+++.++.+||+|||++.....                         ..
T Consensus        99 ~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~-------------------------~~  153 (256)
T cd06612          99 EEIAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTD-------------------------TM  153 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhccc-------------------------Cc
Confidence            46788999999999999999999999999999999999999999999986532                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||++.   +..++.++  ||||+              |++++++++|+++.               
T Consensus       154 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~s~--------------G~il~~l~~g~~p~---------------  199 (256)
T cd06612         154 AKRNTVIGTPFWMAPEVIQ---EIGYNNKA--DIWSL--------------GITAIEMAEGKPPY---------------  199 (256)
T ss_pred             cccccccCCccccCHHHHh---cCCCCchh--hHHHH--------------HHHHHHHHhCCCCC---------------
Confidence            1223456889999999987   56788888  99999              99999987765421               


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...........+.......+...           ...+....+++     .+||+.||++|||+.|++.||||
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~i-----~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         200 SDIHPMRAIFMIPNKPPPTLSDP-----------EKWSPEFNDFV-----KKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             CCcchhhhhhhhccCCCCCCCch-----------hhcCHHHHHHH-----HHHHhcChhhCcCHHHHhcCCCC
Confidence            11111111111111111111000           11224566777     99999999999999999999997

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>KOG0197|consensus

Probab=99.90  E-value=1.6e-24  Score=217.92  Aligned_cols=153  Identities=27%  Similarity=0.333  Sum_probs=128.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+...++.||++|++||+++++|||||-..|||++.+..+||+|||+|+...+                        +..
T Consensus       303 ~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d------------------------~~Y  358 (468)
T KOG0197|consen  303 PQLLDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGD------------------------DEY  358 (468)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCC------------------------Cce
Confidence            46778999999999999999999999999999999999999999999995432                        122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+..-...|.|||.+.   ...++.++  ||||+              |++++|+++.              ...|+
T Consensus       359 ~~~~~~kfPIkWtAPEa~~---~~~FS~kS--DVWSF--------------GVlL~E~fT~--------------G~~py  405 (468)
T KOG0197|consen  359 TASEGGKFPIKWTAPEALN---YGKFSSKS--DVWSF--------------GVLLWELFTY--------------GRVPY  405 (468)
T ss_pred             eecCCCCCCceecCHHHHh---hCCccccc--ceeeh--------------hhhHHHHhcc--------------CCCCC
Confidence            2233334456799999999   77899998  99999              9999998762              34578


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+....+.+..+.++.+..-|..++             ++..+++     ..||..+|++|||.+.+.
T Consensus       406 ~~msn~ev~~~le~GyRlp~P~~CP-------------~~vY~lM-----~~CW~~~P~~RPtF~~L~  455 (468)
T KOG0197|consen  406 PGMSNEEVLELLERGYRLPRPEGCP-------------DEVYELM-----KSCWHEDPEDRPTFETLR  455 (468)
T ss_pred             CCCCHHHHHHHHhccCcCCCCCCCC-------------HHHHHHH-----HHHhhCCcccCCCHHHHH
Confidence            8889999999999888888888764             6777888     999999999999998443

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.90  E-value=2e-24  Score=210.90  Aligned_cols=163  Identities=22%  Similarity=0.399  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.++.|++.||+|||++||+||||||+||+++.++.++|+|||.+.....                         ..
T Consensus       115 ~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~-------------------------~~  169 (285)
T cd06648         115 EQIATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSK-------------------------EV  169 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhcc-------------------------CC
Confidence            46788999999999999999999999999999999999999999998875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||++.   +..++.++  |+||+              |++++++++|..+               +
T Consensus       170 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------Gv~l~ell~g~~p---------------~  215 (285)
T cd06648         170 PRRKSLVGTPYWMAPEVIS---RLPYGTEV--DIWSL--------------GIMVIEMVDGEPP---------------Y  215 (285)
T ss_pred             cccccccCCccccCHHHhc---CCCCCCcc--cHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223457899999999987   56688888  99999              9999997776542               1


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...+......++...........           ...+....+++     .+||+.||++|||+.++++||||.....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~~p~~Rpt~~~il~~~~~~~~~~  277 (285)
T cd06648         216 FNEPPLQAMKRIRDNLPPKLKNL-----------HKVSPRLRSFL-----DRMLVRDPAQRATAAELLNHPFLAKAGP  277 (285)
T ss_pred             cCCCHHHHHHHHHhcCCCCCccc-----------ccCCHHHHHHH-----HHHcccChhhCcCHHHHccCcccccCCC
Confidence            11111112222221211111111           11225566777     9999999999999999999999987553

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.90  E-value=1.9e-24  Score=215.91  Aligned_cols=164  Identities=20%  Similarity=0.253  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                        ....
T Consensus       103 ~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~------------------------~~~~  158 (331)
T cd05624         103 MARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQ------------------------DGTV  158 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccC------------------------CCce
Confidence            5778999999999999999999999999999999999999999999875421                        0111


Q ss_pred             CCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .....+||+.|+|||++...  ....++.++  ||||+              ||++|||++|+.               |
T Consensus       159 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~--DiwSl--------------Gvil~ell~g~~---------------P  207 (331)
T cd05624         159 QSSVAVGTPDYISPEILQAMEDGMGKYGPEC--DWWSL--------------GVCMYEMLYGET---------------P  207 (331)
T ss_pred             eeccccCCcccCCHHHHhccccCCCCCCCcc--cEEee--------------ehhhhhhhhCCC---------------C
Confidence            12335799999999998621  114567777  99999              999999887654               3


Q ss_pred             CCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC--CCChhhhhcCccccc
Q psy7309         161 STGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK--RPSSEQNLCQPISLE  236 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~--Rpta~e~l~hp~f~~  236 (454)
                      +...+......++.. .....+|....          ..++.+.+++     .+||..++++  |++++++++||||..
T Consensus       208 f~~~~~~~~~~~i~~~~~~~~~p~~~~----------~~~~~~~~li-----~~ll~~~~~~~~~~~~~~~~~h~~f~~  271 (331)
T cd05624         208 FYAESLVETYGKIMNHEERFQFPSHIT----------DVSEEAKDLI-----QRLICSRERRLGQNGIEDFKKHAFFEG  271 (331)
T ss_pred             ccCCCHHHHHHHHHcCCCcccCCCccc----------cCCHHHHHHH-----HHHccCchhhcCCCCHHHHhcCCCcCC
Confidence            333222223333221 12223333221          1236778888     9999876654  568999999999974

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.90  E-value=1.9e-24  Score=216.00  Aligned_cols=189  Identities=28%  Similarity=0.380  Sum_probs=125.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++........                     ...
T Consensus       107 ~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~---------------------~~~  165 (334)
T cd07855         107 EHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPT---------------------EHK  165 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCc---------------------CCC
Confidence            46889999999999999999999999999999999999999999999875432100                     111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      ......+||..|+|||++..  ...++.++  |+||+              |+++||+++|++..     ...+......
T Consensus       166 ~~~~~~~~~~~y~~PE~~~~--~~~~~~~~--Di~sl--------------G~~l~el~~g~~pf~~~~~~~~~~~~~~~  227 (334)
T cd07855         166 YFMTEYVATRWYRAPELLLS--LPEYTTAI--DMWSV--------------GCIFAEMLGRRQLFPGKNYVHQLKLILSV  227 (334)
T ss_pred             cccccccccccccChHHhcC--Cccccccc--chHHH--------------HHHHHHHHcCCCccCCCChHHHHHHHHHH
Confidence            22334588999999999862  24577788  99999              99999987766522     1222222222


Q ss_pred             cCCCCCCch---hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         157 ENGPSTGSN---VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      .+.|.....   ..........    .++.. ....|+.+.+. .++...++|     ++||+.||.+|||+++++.|||
T Consensus       228 ~g~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~-~~~~~~~li-----~~~l~~~P~~Rpt~~~~l~~~~  296 (334)
T cd07855         228 LGSPSEEVLNRIGSDRVRKYIQ----NLPRK-QPVPWSKIFPK-ASPEALDLL-----SQMLQFDPEERITVEQALQHPF  296 (334)
T ss_pred             hCCChhHhhhhhchhhHHHHHh----hcccC-CCCCHHHHccc-CCHHHHHHH-----HHHccCChhhCcCHHHHHhChh
Confidence            222221110   0000111000    01110 01223322222 246778888     9999999999999999999999


Q ss_pred             cccCCCC
Q psy7309         234 SLEGSSS  240 (454)
Q Consensus       234 f~~~~~~  240 (454)
                      |.....+
T Consensus       297 ~~~~~~~  303 (334)
T cd07855         297 LAQYHDP  303 (334)
T ss_pred             hhhccCC
Confidence            9876654

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.90  E-value=1.6e-24  Score=213.02  Aligned_cols=162  Identities=24%  Similarity=0.446  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+||+++.++.+||+|||++.....                         ..
T Consensus       117 ~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~-------------------------~~  171 (297)
T cd06659         117 EQIATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISK-------------------------DV  171 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhccc-------------------------cc
Confidence            45788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||++.   +..++.++  |+||+              |++++||++|.++               +
T Consensus       172 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~el~~g~~p---------------~  217 (297)
T cd06659         172 PKRKSLVGTPYWMAPEVIS---RTPYGTEV--DIWSL--------------GIMVIEMVDGEPP---------------Y  217 (297)
T ss_pred             ccccceecCccccCHHHHc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            2233467899999999987   56678888  99999              9999998776542               1


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ...........+...........           ...+....++|     .+||+.||.+|||++++++||||.+..
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~i-----~~~l~~~P~~Rps~~~ll~~~~~~~~~  278 (297)
T cd06659         218 FSDSPVQAMKRLRDSPPPKLKNA-----------HKISPVLRDFL-----ERMLTREPQERATAQELLDHPFLLQTG  278 (297)
T ss_pred             CCCCHHHHHHHHhccCCCCcccc-----------CCCCHHHHHHH-----HHHhcCCcccCcCHHHHhhChhhccCC
Confidence            11111111122211111111100           11225566777     999999999999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=1.8e-24  Score=210.04  Aligned_cols=164  Identities=27%  Similarity=0.412  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.|++.||.|||++||+|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       103 ~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~-------------------------~~  157 (280)
T cd06611         103 PQIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKS-------------------------TL  157 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhcc-------------------------cc
Confidence            46889999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .......||+.|+|||++..+  ....++.++  |+||+              |+++|++++|++               
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~~s--Di~sl--------------G~il~~l~~g~~---------------  206 (280)
T cd06611         158 QKRDTFIGTPYWMAPEVVACETFKDNPYDYKA--DIWSL--------------GITLIELAQMEP---------------  206 (280)
T ss_pred             cccceeecchhhcCHHHHhhcccCCCCCCccc--cHHHH--------------HHHHHHHHhCCC---------------
Confidence            223345789999999997521  134566677  99999              999999877654               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      |+...........+.....+.+...           ...+....+++     .+||+.||.+|||++++++||||...
T Consensus       207 p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~~p~~Rps~~~il~~~~~~~~  268 (280)
T cd06611         207 PHHELNPMRVLLKILKSEPPTLDQP-----------SKWSSSFNDFL-----KSCLVKDPDDRPTAAELLKHPFVSDQ  268 (280)
T ss_pred             CcccCCHHHHHHHHhcCCCCCcCCc-----------ccCCHHHHHHH-----HHHhccChhhCcCHHHHhcChhhccc
Confidence            2222222222223322222221111           11125566787     99999999999999999999999853

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.90  E-value=2.6e-24  Score=209.47  Aligned_cols=160  Identities=28%  Similarity=0.413  Sum_probs=113.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||.|||+++|+||||||+||+++.++.+||+|||++.....                         ...
T Consensus       125 ~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~-------------------------~~~  179 (286)
T cd06638         125 IIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTS-------------------------TRL  179 (286)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCceeeccc-------------------------CCC
Confidence            4778999999999999999999999999999999999999999999875421                         111


Q ss_pred             CCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......||+.|+|||++...  ....|+.++  |+||+              ||++||++++..+               
T Consensus       180 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~--Dv~sl--------------Gvi~~el~~g~~p---------------  228 (286)
T cd06638         180 RRNTSVGTPFWMAPEVIACEQQLDSTYDARC--DVWSL--------------GITAIELGDGDPP---------------  228 (286)
T ss_pred             ccccccCCCcccChhhhchhhhccccccchh--hhhhH--------------HHHHHHHhcCCCC---------------
Confidence            23345789999999998521  134577778  99999              9999998776542               


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      +...........+...........           ...+....+++     .+||+.||.+|||+.|+++|+||
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         229 LADLHPMRALFKIPRNPPPTLHQP-----------ELWSNEFNDFI-----RKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             CCCCchhHHHhhccccCCCcccCC-----------CCcCHHHHHHH-----HHHccCCcccCCCHHHHhhcccC
Confidence            111111111111111111111000           11124566777     99999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.90  E-value=1.8e-24  Score=210.91  Aligned_cols=165  Identities=25%  Similarity=0.347  Sum_probs=116.5

Q ss_pred             hHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+..++.|++.||+|||+ .||+||||||+||+++.++.+||+|||++.....                          .
T Consensus       108 ~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~--------------------------~  161 (288)
T cd06616         108 ILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVD--------------------------S  161 (288)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhcc--------------------------C
Confidence            578899999999999997 4999999999999999999999999999975531                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++....+..++.++  ||||+              |+++|++++|+++....            
T Consensus       162 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~--Di~sl--------------G~il~el~~g~~p~~~~------------  213 (288)
T cd06616         162 IAKTRDAGCRPYMAPERIDPSARDGYDVRS--DVWSL--------------GITLYEVATGKFPYPKW------------  213 (288)
T ss_pred             CccccccCccCccCHHHhccccccCCcchh--hhhHH--------------HHHHHHHHhCCCCchhc------------
Confidence            122334688999999998732123678888  99999              99999987766432110            


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                        ........+......+.++...   .      ...+..+.+|+     .+||+.||++|||++++++||||...
T Consensus       214 --~~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~l~~li-----~~~l~~~p~~Rpt~~~i~~~~~~~~~  273 (288)
T cd06616         214 --NSVFDQLTQVVKGDPPILSNSE---E------REFSPSFVNFI-----NLCLIKDESKRPKYKELLEHPFIKDY  273 (288)
T ss_pred             --chHHHHHhhhcCCCCCcCCCcC---C------CccCHHHHHHH-----HHHccCChhhCcCHHHHhcChhhhch
Confidence              0000111111111222222110   0      11235667777     99999999999999999999999753

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.90  E-value=5.8e-24  Score=210.70  Aligned_cols=193  Identities=22%  Similarity=0.318  Sum_probs=135.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.+||+|||++....                            
T Consensus       121 ~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~----------------------------  172 (313)
T cd06633         121 VEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSS----------------------------  172 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccC----------------------------
Confidence            3567899999999999999999999999999999999999999999875321                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       ......|+..|+|||++.......++.++  |+||+              |+++|++++|.+               |+
T Consensus       173 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~s--Dv~sl--------------Gvil~el~~g~~---------------p~  220 (313)
T cd06633         173 -PANSFVGTPYWMAPEVILAMDEGQYDGKV--DVWSL--------------GITCIELAERKP---------------PL  220 (313)
T ss_pred             -CCCCccccccccChhhccccCCCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence             12245788999999998522235577777  99999              999999877654               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSG  241 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~  241 (454)
                      .................+..+..            ..+....+++     .+||+.+|.+|||+.+++.||||...... 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~li-----~~~l~~~P~~Rp~~~~~l~~~~~~~~~~~-  282 (313)
T cd06633         221 FNMNAMSALYHIAQNDSPTLQSN------------EWTDSFRGFV-----DYCLQKIPQERPASAELLRHDFVRRDRPA-  282 (313)
T ss_pred             CCCChHHHHHHHHhcCCCCCCcc------------ccCHHHHHHH-----HHHccCChhhCcCHHHHhcCcccCCCchh-
Confidence            22221122222211111111111            1124466777     99999999999999999999999854321 


Q ss_pred             CCccCccccccCCCCCCCCcchHHHHHHHHHHhcCCCChhHHHHHHHHhC
Q psy7309         242 LSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACFN  291 (454)
Q Consensus       242 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f~  291 (454)
                                        .+. .+..+..++.+.+.+...|+++.+.+|.
T Consensus       283 ------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (313)
T cd06633         283 ------------------RVL-IDLIQRTKDAVRELDNLQYRKMKKILFQ  313 (313)
T ss_pred             ------------------HHH-HHHHHHHHHHHhhhhHHHHHHHHHHhcC
Confidence                              112 2333335557778888999999888874

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.90  E-value=9.8e-25  Score=207.39  Aligned_cols=148  Identities=24%  Similarity=0.377  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|+++||+|||++||+||||||+||+++.++.++|+|||.+.....                           
T Consensus        85 ~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~---------------------------  137 (237)
T cd05576          85 ECVKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVED---------------------------  137 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhcccc---------------------------
Confidence            45788999999999999999999999999999999999999999998764321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       ......++..|+|||.+.   ...++.++  |+||+              |+++||+++|......          .|.
T Consensus       138 -~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~el~~g~~~~~~----------~~~  187 (237)
T cd05576         138 -SCDGEAVENMYCAPEVGG---ISEETEAC--DWWSL--------------GAILFELLTGKTLVEC----------HPS  187 (237)
T ss_pred             -ccccCCcCccccCCcccC---CCCCCchh--hHHHH--------------HHHHHHHHHCcchhhc----------Cch
Confidence             112335577899999987   56677788  99999              9999998776532100          000


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f  234 (454)
                      .          ........+|..             .++...++|     .+||+.||++|||+     +|+++||||
T Consensus       188 ~----------~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         188 G----------INTHTTLNIPEW-------------VSEEARSLL-----QQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             h----------cccccccCCccc-------------CCHHHHHHH-----HHHccCCHHHhcCCCccchHHHHcCCCC
Confidence            0          000011112222             236677888     99999999999996     999999997

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.90  E-value=9.7e-25  Score=218.33  Aligned_cols=95  Identities=27%  Similarity=0.477  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.++.|++.||.|||+. +|+||||||+|||++.++.+||+|||++.....                           
T Consensus       104 ~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~---------------------------  156 (333)
T cd06650         104 ILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---------------------------  156 (333)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhh---------------------------
Confidence            5678999999999999975 799999999999999999999999999875421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCc
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDR  143 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~  143 (454)
                      .......||..|+|||++.   +..++.++  |+||+              ||++|++++|+
T Consensus       157 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~~l~~g~  199 (333)
T cd06650         157 SMANSFVGTRSYMSPERLQ---GTHYSVQS--DIWSM--------------GLSLVEMAIGR  199 (333)
T ss_pred             hccccCCCCccccCHHHhc---CCCCCcHH--HHHHH--------------HHHHHHHHHCC
Confidence            1123357899999999987   56788888  99999              99999976654

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>KOG0612|consensus

Probab=99.90  E-value=9.5e-25  Score=233.78  Aligned_cols=162  Identities=25%  Similarity=0.318  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      -++.++.+|+.||.-||+.|+|||||||+|||+|..|++||+|||.+..+..                        .+..
T Consensus       176 ~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHikLADFGsClkm~~------------------------dG~V  231 (1317)
T KOG0612|consen  176 WARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHIKLADFGSCLKMDA------------------------DGTV  231 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcEeeccchhHHhcCC------------------------CCcE
Confidence            4789999999999999999999999999999999999999999999987653                        2334


Q ss_pred             CCcCcccccceeccccccc-ccc-ccccccCCccccchhhhHHHHHHHHHhcceeeeeec-CCchhhHHHHHHHhhhcCC
Q psy7309          83 SHTGQVGTALYAAPELDSH-GVK-AMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVY-KDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~-~~~-~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~-~~~~~~~~~l~~~i~~~~~  159 (454)
                      .....+|||-|.|||++.. +.+ +.|+..|  |+||+              ||++|||+ +..|+..+.+         
T Consensus       232 ~s~~aVGTPDYISPEvLqs~~~~~g~yG~ec--DwWSl--------------GV~~YEMlyG~TPFYadsl---------  286 (1317)
T KOG0612|consen  232 RSSVAVGTPDYISPEVLQSQGDGKGEYGREC--DWWSL--------------GVFMYEMLYGETPFYADSL---------  286 (1317)
T ss_pred             EeccccCCCCccCHHHHHhhcCCccccCCcc--chhhh--------------HHHHHHHHcCCCcchHHHH---------
Confidence            4556799999999999863 333 7899999  99999              99999954 4334333333         


Q ss_pred             CCCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC---hhhhhcCcccc
Q psy7309         160 PSTGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS---SEQNLCQPISL  235 (454)
Q Consensus       160 p~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt---a~e~l~hp~f~  235 (454)
                             ..+..++- ......||...           ..++.+++||     ++++ .+|..|.+   ++++..||||.
T Consensus       287 -------veTY~KIm~hk~~l~FP~~~-----------~VSeeakdLI-----~~ll-~~~e~RLgrngiedik~HpFF~  342 (1317)
T KOG0612|consen  287 -------VETYGKIMNHKESLSFPDET-----------DVSEEAKDLI-----EALL-CDREVRLGRNGIEDIKNHPFFE  342 (1317)
T ss_pred             -------HHHHHHHhchhhhcCCCccc-----------ccCHHHHHHH-----HHHh-cChhhhcccccHHHHHhCcccc
Confidence                   33333322 13445666432           2568899999     7655 78999999   99999999998


Q ss_pred             cC
Q psy7309         236 EG  237 (454)
Q Consensus       236 ~~  237 (454)
                      ..
T Consensus       343 g~  344 (1317)
T KOG0612|consen  343 GI  344 (1317)
T ss_pred             CC
Confidence            53

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.90  E-value=2.2e-24  Score=209.78  Aligned_cols=179  Identities=28%  Similarity=0.385  Sum_probs=116.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       100 ~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~-------------------------~~  154 (284)
T cd07860         100 PLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV-------------------------PV  154 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhccc-------------------------Cc
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      .......+++.|+|||++..  ...++.++  |+||+              |+++|++++|+.     .....+.+.+..
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~il~~l~tg~~p~~~~~~~~~~~~~~~~  216 (284)
T cd07860         155 RTYTHEVVTLWYRAPEILLG--CKYYSTAV--DIWSL--------------GCIFAEMVTRRALFPGDSEIDQLFRIFRT  216 (284)
T ss_pred             cccccccccccccCCeEEec--CCCCCcHH--HHHHH--------------HHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence            12234467889999998761  23356677  99999              999999777654     122233333332


Q ss_pred             cCCCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .+.|..... ........    ...++.+.. -.++... ...++...++|     .+||+.||++|||++++++||||
T Consensus       217 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~-~~~~~~~~~li-----~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         217 LGTPDEVVWPGVTSLPDY----KPSFPKWAR-QDFSKVV-PPLDEDGRDLL-----SQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             hCCCChhhhhhhhHHHHH----Hhhcccccc-cCHHHHc-ccCCHHHHHHH-----HHhcCCCcccCCCHHHHhcCCCC
Confidence            222221100 00000000    001111100 0000110 11235566788     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.90  E-value=2e-24  Score=210.05  Aligned_cols=165  Identities=26%  Similarity=0.358  Sum_probs=117.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.|++.||+|||+.||+|+||||+|||++.++.+||+|||++.....                           .
T Consensus        96 ~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~---------------------------~  148 (279)
T cd06619          96 VLGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVN---------------------------S  148 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceeccc---------------------------c
Confidence            5678999999999999999999999999999999999999999999875421                           1


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      .....+||..|+|||++.   +..++.++  |+||+              |+++|++++|..+......        ...
T Consensus       149 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~~l~~l~~g~~pf~~~~~--------~~~  201 (279)
T cd06619         149 IAKTYVGTNAYMAPERIS---GEQYGIHS--DVWSL--------------GISFMELALGRFPYPQIQK--------NQG  201 (279)
T ss_pred             cccCCCCChhhcCceeec---CCCCCCcc--hHHHH--------------HHHHHHHHhCCCCchhhcc--------ccc
Confidence            233468999999999998   56788888  99999              9999997776543211000        000


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ..........+........+.            ...++...+++     .+||+.||.+||+++|++.||||....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~li-----~~~l~~~P~~Rp~~~eil~~~~~~~~~  260 (279)
T cd06619         202 SLMPLQLLQCIVDEDPPVLPV------------GQFSEKFVHFI-----TQCMRKQPKERPAPENLMDHPFIVQYN  260 (279)
T ss_pred             ccchHHHHHHHhccCCCCCCC------------CcCCHHHHHHH-----HHHhhCChhhCCCHHHHhcCccccccc
Confidence            000001111111111111111            11225667777     999999999999999999999998653

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.90  E-value=8.5e-25  Score=242.64  Aligned_cols=181  Identities=17%  Similarity=0.202  Sum_probs=112.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCC-C---CCC---
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP-P---IDS---   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~-~---~~~---   74 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++..+.+|++|||++...........  ...+.-.+ .   ...   
T Consensus        80 ~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~~~~~~~~--ki~DfG~a~~~~~~~~~~~  157 (793)
T PLN00181         80 FECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSGSDEDATT--KSREIGSSRREEILSERRI  157 (793)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCcccccccCcc--cccccccccccccccccch
Confidence            36889999999999999999999999999999998777777777766643211100000  00000000 0   000   


Q ss_pred             -----CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHH
Q psy7309          75 -----TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEE  149 (454)
Q Consensus        75 -----~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~  149 (454)
                           .............+||+.|||||++.   +..|+.++  ||||+              ||++|||+++.+.....
T Consensus       158 ~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~---~~~~~~~s--DVwSl--------------GviL~ELl~~~~~~~~~  218 (793)
T PLN00181        158 EKLEEVKKQPFPMKQILAMEMSWYTSPEEDN---GSSSNCAS--DVYRL--------------GVLLFELFCPVSSREEK  218 (793)
T ss_pred             hhhhccccCCCcccccccCCCcceEChhhhc---cCCCCchh--hhhhH--------------HHHHHHHhhCCCchhhH
Confidence                 00000011122357999999999988   67788888  99999              99999987755432211


Q ss_pred             HHHHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         150 LKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       150 l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      . .                ....+...   .+|....          ...+....++     .+||+.||.+|||+.|++
T Consensus       219 ~-~----------------~~~~~~~~---~~~~~~~----------~~~~~~~~~~-----~~~L~~~P~~Rps~~eil  263 (793)
T PLN00181        219 S-R----------------TMSSLRHR---VLPPQIL----------LNWPKEASFC-----LWLLHPEPSCRPSMSELL  263 (793)
T ss_pred             H-H----------------HHHHHHHh---hcChhhh----------hcCHHHHHHH-----HHhCCCChhhCcChHHHh
Confidence            0 0                00000000   0111100          0013344666     899999999999999999


Q ss_pred             cCcccccCC
Q psy7309         230 CQPISLEGS  238 (454)
Q Consensus       230 ~hp~f~~~~  238 (454)
                      +||||.+..
T Consensus       264 ~h~~~~~~~  272 (793)
T PLN00181        264 QSEFINEPR  272 (793)
T ss_pred             hchhhhhhh
Confidence            999998643

>KOG4721|consensus

Probab=99.90  E-value=1.2e-24  Score=218.34  Aligned_cols=152  Identities=28%  Similarity=0.343  Sum_probs=114.7

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      ...|..+|+.|++|||.+.|||||||.-||||..+..|||+|||.++.+..                          ...
T Consensus       214 lv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~--------------------------~ST  267 (904)
T KOG4721|consen  214 LVDWSKGIAGGMNYLHLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSD--------------------------KST  267 (904)
T ss_pred             HHHHHHHhhhhhHHHHHhhHhhhccCCCceEeeccceEEeccccchHhhhh--------------------------hhh
Confidence            567899999999999999999999999999999999999999999987642                          234


Q ss_pred             CcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCC
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTG  163 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~  163 (454)
                      ..+++||..|||||++.   +.+.+.++  ||||+              |+++|||+++..+..+--...|....+    
T Consensus       268 kMSFaGTVaWMAPEvIr---nePcsEKV--DIwSf--------------GVVLWEmLT~EiPYkdVdssAIIwGVG----  324 (904)
T KOG4721|consen  268 KMSFAGTVAWMAPEVIR---NEPCSEKV--DIWSF--------------GVVLWEMLTGEIPYKDVDSSAIIWGVG----  324 (904)
T ss_pred             hhhhhhhHhhhCHHHhh---cCCccccc--ceehh--------------HHHHHHHHhcCCCccccchheeEEecc----
Confidence            56789999999999999   88999999  99999              999999988765322211111110000    


Q ss_pred             chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         164 SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                                .+.-....|..++             ...+-||     +.||+-.|..|||++|+|.|-
T Consensus       325 ----------sNsL~LpvPstcP-------------~GfklL~-----Kqcw~sKpRNRPSFrqil~Hl  365 (904)
T KOG4721|consen  325 ----------SNSLHLPVPSTCP-------------DGFKLLL-----KQCWNSKPRNRPSFRQILLHL  365 (904)
T ss_pred             ----------CCcccccCcccCc-------------hHHHHHH-----HHHHhcCCCCCccHHHHHHHH
Confidence                      0011122233221             3333444     999999999999999999984

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.90  E-value=3.9e-24  Score=213.01  Aligned_cols=187  Identities=27%  Similarity=0.358  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+|+||||+|||++.++.++|+|||++.......                      ...
T Consensus       103 ~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~----------------------~~~  160 (330)
T cd07834         103 DHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDE----------------------DEK  160 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeecccc----------------------ccc
Confidence            3578899999999999999999999999999999999999999999998543210                      001


Q ss_pred             CCCcCcccccceeccccccccccc-cccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKA-MYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~-~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~  155 (454)
                      .......+|+.|+|||++.   +. .++.++  |+||+              |++++++++|.+.     ....+...+.
T Consensus       161 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~s--Di~sl--------------G~il~~l~~g~~pf~~~~~~~~~~~i~~  221 (330)
T cd07834         161 GFLTEYVVTRWYRAPELLL---SSSRYTKAI--DIWSV--------------GCIFAELLTRKPLFPGRDYIDQLNLIVE  221 (330)
T ss_pred             ccccccccccCcCCceeee---cccCCCcch--hHHHH--------------HHHHHHHHcCCCCcCCCCHHHHHHHHHH
Confidence            2234457899999999987   34 677777  99999              9999998776652     1222222222


Q ss_pred             hcCCCCCCchh---hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         156 RENGPSTGSNV---QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       156 ~~~~p~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      ..+.|......   ......+....    +. .....|....+. .++.+.++|     .+||+.||.+|||+++++.||
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~-~~~~~~~li-----~~~l~~~P~~Rpt~~~ll~~~  290 (330)
T cd07834         222 VLGTPSEEDLKFITSEKARNYLKSL----PK-KPKKPLSKLFPG-ASPEAIDLL-----EKMLVFDPKKRITADEALAHP  290 (330)
T ss_pred             hcCCCChhHhhhccccchhhHHhhc----cc-CCcchhHHhccc-CCHHHHHHH-----HHHccCChhhCCCHHHHHhCc
Confidence            22222211100   00000000000    00 000122222112 236677888     999999999999999999999


Q ss_pred             ccccCCCC
Q psy7309         233 ISLEGSSS  240 (454)
Q Consensus       233 ~f~~~~~~  240 (454)
                      ||.....+
T Consensus       291 ~~~~~~~~  298 (330)
T cd07834         291 YLAQLHDP  298 (330)
T ss_pred             cHHhhccc
Confidence            99876554

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.90  E-value=9.2e-24  Score=208.38  Aligned_cols=192  Identities=23%  Similarity=0.344  Sum_probs=130.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++....                            
T Consensus       115 ~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~----------------------------  166 (307)
T cd06607         115 VEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVS----------------------------  166 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecC----------------------------
Confidence            3577899999999999999999999999999999999999999999886431                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       ......|++.|+|||++.......++.++  ||||+              |+++||+++|.++               +
T Consensus       167 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~s--Dv~s~--------------G~il~el~tg~~p---------------~  214 (307)
T cd06607         167 -PANSFVGTPYWMAPEVILAMDEGQYDGKV--DVWSL--------------GITCIELAERKPP---------------L  214 (307)
T ss_pred             -CCCCccCCccccCceeeeccCCCCCCccc--chHHH--------------HHHHHHHHcCCCC---------------C
Confidence             11234678899999997522245577778  99999              9999998776542               1


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSG  241 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~  241 (454)
                      ...........+.....+..+..    .|        +....++|     .+||..||++|||+.+++.||||.....+ 
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~----~~--------~~~~~~li-----~~~l~~~p~~Rp~~~~il~~~~~~~~~~~-  276 (307)
T cd06607         215 FNMNAMSALYHIAQNDSPTLSSN----DW--------SDYFRNFV-----DSCLQKIPQDRPSSEELLKHRFVLRERPP-  276 (307)
T ss_pred             CCccHHHHHHHHhcCCCCCCCch----hh--------CHHHHHHH-----HHHhcCChhhCcCHHHHhcChhhcccCCc-
Confidence            11111111111111222221111    11        24566777     99999999999999999999999854321 


Q ss_pred             CCccCccccccCCCCCCCCcchHHHHHHHHHHhcCCCChhHHHHHHHHh
Q psy7309         242 LSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACF  290 (454)
Q Consensus       242 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f  290 (454)
                                         ....+.....+.....-+.-.|+.+.+.+|
T Consensus       277 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (307)
T cd06607         277 -------------------TVIIDLIQRTKDAVRELDNLQYRKMKKILF  306 (307)
T ss_pred             -------------------HHHHHHHHHHHHHhhhccccchhHHHHHhc
Confidence                               011222233333444445556777777666

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.90  E-value=2.3e-24  Score=210.79  Aligned_cols=180  Identities=26%  Similarity=0.369  Sum_probs=115.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++. ++.+||+|||++..+..                         .
T Consensus       110 ~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~-------------------------~  164 (295)
T cd07837         110 KTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSI-------------------------P  164 (295)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccceecCC-------------------------C
Confidence            467889999999999999999999999999999998 88999999999875421                         1


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIR  155 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~  155 (454)
                      ....+...+++.|+|||++..  ...++.++  |+||+              |+++|+|++|.+.     ....+...+.
T Consensus       165 ~~~~~~~~~~~~~~aPE~~~~--~~~~~~~~--Di~sl--------------G~~l~~l~~g~~~~~~~~~~~~~~~~~~  226 (295)
T cd07837         165 VKSYTHEIVTLWYRAPEVLLG--STHYSTPV--DIWSV--------------GCIFAEMSRKQPLFPGDSELQQLLHIFK  226 (295)
T ss_pred             ccccCCcccccCCCChHHhhC--CCCCCchH--HHHHH--------------HHHHHHHHcCCCCCCCCCHHHHHHHHHH
Confidence            112234467889999999861  34567778  99999              9999997776542     2222222222


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ....|.... +.... ..  .....++...+ ....... ...++.+.++|     .+||..||.+|||++|++.||||.
T Consensus       227 ~~~~~~~~~-~~~~~-~~--~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~i-----~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         227 LLGTPTEQV-WPGVS-KL--RDWHEFPQWKP-QDLSRAV-PDLSPEGLDLL-----QKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             HhCCCChhh-Ccchh-hc--cchhhcCcccc-hhHHHhc-cccCHHHHHHH-----HHHccCChhhcCCHHHHhcCCCcC
Confidence            111111100 00000 00  00000000000 0000000 11236667788     999999999999999999999984

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.90  E-value=1.7e-24  Score=210.99  Aligned_cols=158  Identities=25%  Similarity=0.329  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                           
T Consensus        97 ~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~---------------------------  149 (279)
T cd05633          97 KEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK---------------------------  149 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccc---------------------------
Confidence            46788999999999999999999999999999999999999999999864321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++..  +..++.++  |+||+              ||++|++++|..+               +
T Consensus       150 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~~l~~l~~g~~p---------------f  196 (279)
T cd05633         150 KKPHASVGTHGYMAPEVLQK--GTAYDSSA--DWFSL--------------GCMLFKLLRGHSP---------------F  196 (279)
T ss_pred             cCccCcCCCcCccCHHHhcC--CCCCCchh--hhHHH--------------HHHHHHHHhCCCC---------------c
Confidence            11223478999999999862  34577788  99999              9999997776542               1


Q ss_pred             CCch--hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccc
Q psy7309         162 TGSN--VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~--~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f  234 (454)
                      ....  ...............++..             .++...++|     ++||..||++||     |++|+++||||
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~R~~~~~~~~~~~~~h~~~  258 (279)
T cd05633         197 RQHKTKDKHEIDRMTLTVNVELPDS-------------FSPELKSLL-----EGLLQRDVSKRLGCLGRGAQEVKEHVFF  258 (279)
T ss_pred             CCCCCcCHHHHHHHhhcCCcCCccc-------------cCHHHHHHH-----HHHhcCCHHHhcCCCCCCHHHHHhCccc
Confidence            1100  0011111111112222222             236677888     999999999999     69999999999


Q ss_pred             ccC
Q psy7309         235 LEG  237 (454)
Q Consensus       235 ~~~  237 (454)
                      ...
T Consensus       259 ~~~  261 (279)
T cd05633         259 KGI  261 (279)
T ss_pred             cCC
Confidence            863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.90  E-value=4.7e-24  Score=214.02  Aligned_cols=179  Identities=31%  Similarity=0.386  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++....                            
T Consensus       117 ~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~----------------------------  168 (342)
T cd07879         117 DKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHAD----------------------------  168 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCC----------------------------
Confidence            4678899999999999999999999999999999999999999999986431                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......||+.|+|||++..  ...++.++  |+||+              |++++||++|+..     ....+...+..
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------Gvil~el~~g~~pf~~~~~~~~~~~~~~~  230 (342)
T cd07879         169 AEMTGYVVTRWYRAPEVILN--WMHYNQTV--DIWSV--------------GCIMAEMLTGKTLFKGKDYLDQLTQILKV  230 (342)
T ss_pred             CCCCCceeeecccChhhhcC--ccccCchH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            12234578999999999862  24577778  99999              9999997766542     12223222222


Q ss_pred             cCCCCCCchhhhhh-----hhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         157 ENGPSTGSNVQKSL-----QKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       157 ~~~p~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+.|..  ......     ..+.... ...+.    ..+....+. .++.+.++|     .+||+.||.+|||++|++.|
T Consensus       231 ~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~-~~~~~~~li-----~~~l~~dP~~R~~~~e~l~h  297 (342)
T cd07879         231 TGVPGP--EFVQKLEDKAAKSYIKSL-PKYPR----KDFSTLFPK-ASPQAVDLL-----EKMLELDVDKRLTATEALEH  297 (342)
T ss_pred             cCCCCH--HHHHHhcccchHHHHhhc-CCccc----chHHHHhcC-CCHHHHHHH-----HHHcCCChhhCcCHHHHhcC
Confidence            111111  010000     0000000 01110    011111111 235566777     99999999999999999999


Q ss_pred             cccccCCC
Q psy7309         232 PISLEGSS  239 (454)
Q Consensus       232 p~f~~~~~  239 (454)
                      |||.....
T Consensus       298 ~~f~~~~~  305 (342)
T cd07879         298 PYFDSFRD  305 (342)
T ss_pred             cchhhccc
Confidence            99987654

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.90  E-value=2e-24  Score=209.93  Aligned_cols=154  Identities=20%  Similarity=0.249  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++......                       ....
T Consensus       125 ~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~-----------------------~~~~  181 (283)
T cd05048         125 DFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSA-----------------------DYYR  181 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcEEECCCcceeecccc-----------------------cccc
Confidence            56789999999999999999999999999999999999999999998754210                       0111


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+|+.|+|||.+.   +..++.++  ||||+              ||++||+++ |..               |+
T Consensus       182 ~~~~~~~~~~y~aPE~~~---~~~~~~~s--Dv~sl--------------G~il~el~~~g~~---------------p~  227 (283)
T cd05048         182 VQSKSLLPVRWMPPEAIL---YGKFTTES--DIWSF--------------GVVLWEIFSYGLQ---------------PY  227 (283)
T ss_pred             ccCCCcccccccCHHHhc---cCcCchhh--hHHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            223446788999999987   56788888  99999              999999765 332               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+....+....+........+...             +....+++     .+||+.||.+|||++|++++
T Consensus       228 ~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~l~-----~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         228 YGFSNQEVIEMIRSRQLLPCPEDC-------------PARVYALM-----IECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             CCCCHHHHHHHHHcCCcCCCcccC-------------CHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            222223333333323222223221             26677888     99999999999999988863

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.90  E-value=3.3e-24  Score=208.69  Aligned_cols=159  Identities=25%  Similarity=0.355  Sum_probs=116.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.||+||||||+||+++.++.+||+|||++.....                           
T Consensus        97 ~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~---------------------------  149 (278)
T cd05606          97 AEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK---------------------------  149 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCc---------------------------
Confidence            46889999999999999999999999999999999999999999999874321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++..  +..++.++  |+||+              |++++++++|+.+               +
T Consensus       150 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~s~--------------G~~l~~l~~g~~p---------------~  196 (278)
T cd05606         150 KKPHASVGTHGYMAPEVLQK--GVAYDSSA--DWFSL--------------GCMLFKLLRGHSP---------------F  196 (278)
T ss_pred             cCCcCcCCCcCCcCcHHhcC--CCCCCccc--chHhH--------------HHHHHHHHhCCCC---------------C
Confidence            11123478999999999862  33578888  99999              9999998776542               1


Q ss_pred             CCchh--hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccc
Q psy7309         162 TGSNV--QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f  234 (454)
                      .....  ..............+|..             .+....+++     .+||..||.+||     ++.++++||||
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~s~~~~~li-----~~~l~~~p~~R~~~~~~~~~~ll~~~~~  258 (278)
T cd05606         197 RQHKTKDKHEIDRMTLTMAVELPDS-------------FSPELRSLL-----EGLLQRDVNRRLGCLGRGAQEVKEHPFF  258 (278)
T ss_pred             CCCCccchHHHHHHhhccCCCCCCc-------------CCHHHHHHH-----HHHhhcCHHhccCCCCCCHHHHHhCccc
Confidence            11100  000011111112222222             236777888     999999999999     99999999999


Q ss_pred             ccCC
Q psy7309         235 LEGS  238 (454)
Q Consensus       235 ~~~~  238 (454)
                      ....
T Consensus       259 ~~~~  262 (278)
T cd05606         259 RSLD  262 (278)
T ss_pred             cCCC
Confidence            8644

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.90  E-value=3.7e-24  Score=207.63  Aligned_cols=176  Identities=26%  Similarity=0.350  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||+|||++|++||||||+||+++. +.+||+|||++.....                          .
T Consensus       100 ~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~--------------------------~  152 (282)
T cd07831         100 KRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYS--------------------------K  152 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEeccccccccc--------------------------C
Confidence            468899999999999999999999999999999999 9999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      .......+|..|+|||.+..  ...++.++  |+||+              ||++||++++.++.     .+.+......
T Consensus       153 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------Gv~l~el~~~~~p~~~~~~~~~~~~~~~~  214 (282)
T cd07831         153 PPYTEYISTRWYRAPECLLT--DGYYGPKM--DIWAV--------------GCVFFEILSLFPLFPGTNELDQIAKIHDV  214 (282)
T ss_pred             CCcCCCCCCcccCChhHhhc--CCCCCcch--hHHHH--------------HHHHHHHHcCCcCCCCCCHHHHHHHHHHH
Confidence            11233567899999998752  34467777  99999              99999977654311     1111111111


Q ss_pred             cCCCCCCchhhhhhhhhcc--CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQK--SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .+.+.. ..    ...+..  .....++...... ..... ...+....++|     .+||+.||++|||++++++||||
T Consensus       215 ~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~li-----~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         215 LGTPDA-EV----LKKFRKSRHMNYNFPSKKGTG-LRKLL-PNASAEGLDLL-----KKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             cCCCCH-HH----HHhhcccccccccCccccccc-HHHHc-ccccHHHHHHH-----HHHhccCcccccCHHHHhhCCCC
Confidence            111111 11    111111  1111222211100 00000 12246677777     99999999999999999999997

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.90  E-value=2.8e-24  Score=210.62  Aligned_cols=185  Identities=24%  Similarity=0.263  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       102 ~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~-------------------------~~  156 (298)
T cd07841         102 ADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGS-------------------------PN  156 (298)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccC-------------------------CC
Confidence            46789999999999999999999999999999999999999999999875431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......+++.|+|||.+..  ...++.++  |+||+              ||+++|++++.+.     ..+.+......
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~il~e~~~g~~~~~~~~~~~~~~~~~~~  218 (298)
T cd07841         157 RKMTHQVVTRWYRAPELLFG--ARHYGVGV--DMWSV--------------GCIFAELLLRVPFLPGDSDIDQLGKIFEA  218 (298)
T ss_pred             ccccccccceeeeCHHHHhC--CCCCCcHH--HHHHH--------------HHHHHHHHcCCccccCCccHHHHHHHHHH
Confidence            22334467889999998751  34567778  99999              9999997776542     11222222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ...|.... .... ..............   ....... ...+..+.+++     .+||+.||++|||+.|++.||||..
T Consensus       219 ~~~~~~~~-~~~~-~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~li-----~~~l~~~P~~R~s~~e~l~~~~~~~  287 (298)
T cd07841         219 LGTPTEEN-WPGV-TSLPDYVEFKPFPP---TPLKQIF-PAASDDALDLL-----QRLLTLNPNKRITARQALEHPYFSN  287 (298)
T ss_pred             cCCCchhh-hhhc-ccccccccccccCC---cchhhhc-ccccHHHHHHH-----HHHhcCCcccCcCHHHHhhCccccC
Confidence            11221110 0000 00000000000000   0011111 11235566777     9999999999999999999999997


Q ss_pred             CCCC
Q psy7309         237 GSSS  240 (454)
Q Consensus       237 ~~~~  240 (454)
                      ...+
T Consensus       288 ~~~~  291 (298)
T cd07841         288 DPAP  291 (298)
T ss_pred             CCCC
Confidence            6543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.90  E-value=4.2e-24  Score=208.67  Aligned_cols=182  Identities=21%  Similarity=0.290  Sum_probs=114.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+||+++.++.+||+|||+++....                         ..
T Consensus       103 ~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~-------------------------~~  157 (291)
T cd07844         103 HNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSV-------------------------PS  157 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCC-------------------------CC
Confidence            46889999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh------hHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK------TLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~------~~~~l~~~i~  155 (454)
                      .......++..|+|||++..  ...++.++  ||||+              |+++|+|++|.+.      ..+.+.....
T Consensus       158 ~~~~~~~~~~~~~aPE~~~~--~~~~~~~~--Dv~sl--------------G~il~~l~~g~~~~~~~~~~~~~~~~~~~  219 (291)
T cd07844         158 KTYSNEVVTLWYRPPDVLLG--STEYSTSL--DMWGV--------------GCIFYEMATGRPLFPGSTDVEDQLHKIFR  219 (291)
T ss_pred             ccccccccccccCCcHHhhc--CcccCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCccHHHHHHHHHH
Confidence            11223457889999999861  24577778  99999              9988887665542      2222322222


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCcccc-ccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRS-SFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ....|.... +........ .....++.... ... +............+++     .+||+.||++|||+.|++.||||
T Consensus       220 ~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li-----~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         220 VLGTPTEET-WPGVSSNPE-FKPYSFPFYPPRPLI-NHAPRLDRIPHGEELA-----LKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             hcCCCChhh-hhhhhhccc-cccccccccCChhHH-HhCcCCCCchhHHHHH-----HHHhccCcccccCHHHHhcCCCC
Confidence            222222211 110000000 00000000000 000 0000000114556777     99999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.90  E-value=3.2e-24  Score=208.47  Aligned_cols=182  Identities=24%  Similarity=0.274  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       100 ~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~-------------------------~~  154 (286)
T cd07847         100 HLIKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTG-------------------------PG  154 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCC-------------------------Cc
Confidence            45789999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......++..|+|||++..  ...++.++  |+||+              |++++++++|.++     ..+.+......
T Consensus       155 ~~~~~~~~~~~~~aPE~~~~--~~~~~~~~--Di~sl--------------G~i~~~l~~g~~p~~~~~~~~~~~~~~~~  216 (286)
T cd07847         155 DDYTDYVATRWYRAPELLVG--DTQYGPPV--DVWAI--------------GCVFAELLTGQPLWPGKSDVDQLYLIRKT  216 (286)
T ss_pred             ccccCcccccccCCHHHHhC--CCCcCchh--hhHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            12334568899999999761  34577778  99999              9999998776542     11222111110


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...-..  ........-........|.......+.... ...+....+|+     .+||+.||++|||+.|++.||||
T Consensus       217 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li-----~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         217 LGDLIP--RHQQIFSTNQFFKGLSIPEPETREPLESKF-PNISSPALSFL-----KGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             hCCCCh--HHhhhcccccccccccCCCcccccCHHHHh-ccCCHHHHHHH-----HHHhcCCccccCCHHHHhcCCCC
Confidence            000000  000000000000000011110000011001 11235566777     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.90  E-value=5e-24  Score=207.34  Aligned_cols=183  Identities=24%  Similarity=0.331  Sum_probs=118.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++|++|+||||+||+++.++.+||+|||++.....                        ...
T Consensus       100 ~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~------------------------~~~  155 (288)
T cd07833         100 DAVRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRA------------------------RPA  155 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCC------------------------Ccc
Confidence            46789999999999999999999999999999999999999999999886532                        111


Q ss_pred             CCCcCcccccceeccccccccccc-cccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKA-MYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~-~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~  155 (454)
                      ......+++..|+|||++.   .. .++.++  |+||+              |++++++++|++..     .+.+.....
T Consensus       156 ~~~~~~~~~~~~~~PE~~~---~~~~~~~~~--Dv~sl--------------G~~l~~l~~g~~~~~~~~~~~~~~~~~~  216 (288)
T cd07833         156 SPLTDYVATRWYRAPELLV---GDTNYGKPV--DVWAI--------------GCIMAELLDGEPLFPGDSDIDQLYLIQK  216 (288)
T ss_pred             ccccCcccccCCcCCchhc---CCCCcCchh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            1234467889999999987   34 677788  99999              99999977765421     111111111


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                       ..++..... ......-.......++.......+........++...+++     ++||..||++|||++++++||||
T Consensus       217 -~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         217 -CLGPLPPSH-QELFSSNPRFAGVAFPEPSQPESLERRYPGKVSSPALDFL-----KACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             -HhCCCCHHH-hhhcccCccccccccCCCCCcHHHHHhcCCccchHHHHHH-----HHHhccCchhcccHHHHhcCCCC
Confidence             111111000 0000000000000111111001111111122346677888     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.90  E-value=4.5e-24  Score=207.32  Aligned_cols=164  Identities=23%  Similarity=0.315  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||+|||++ +++||||||+||+++.++.+||+|||++.....                          
T Consensus       103 ~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~--------------------------  156 (283)
T cd06617         103 DILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVD--------------------------  156 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeeccccccccc--------------------------
Confidence            35789999999999999997 999999999999999999999999999875421                          


Q ss_pred             CCCCcCcccccceecccccccccc-ccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVK-AMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~-~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ....+...|+..|+|||++..... ..++.++  |+||+              ||++|+|++|+.+.             
T Consensus       157 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~--Di~sl--------------G~~l~~l~~g~~p~-------------  207 (283)
T cd06617         157 SVAKTIDAGCKPYMAPERINPELNQKGYDVKS--DVWSL--------------GITMIELATGRFPY-------------  207 (283)
T ss_pred             ccccccccCCccccChhhcCCcccccccCccc--cchhh--------------HHHHHHHHhCCCCC-------------
Confidence            112233578899999998862212 4567777  99999              99999987765421             


Q ss_pred             CCCCc-hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGS-NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                        ... .....+..........++..            ..+....++|     .+||..||.+|||++++++||||....
T Consensus       208 --~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~li-----~~~l~~~p~~Rp~~~~il~~~~~~~~~  268 (283)
T cd06617         208 --DSWKTPFQQLKQVVEEPSPQLPAE------------KFSPEFQDFV-----NKCLKKNYKERPNYPELLQHPFFELHL  268 (283)
T ss_pred             --CccccCHHHHHHHHhcCCCCCCcc------------ccCHHHHHHH-----HHHccCChhhCcCHHHHhcCchhhhcc
Confidence              110 00111111111222222221            1225566777     999999999999999999999999754


Q ss_pred             C
Q psy7309         239 S  239 (454)
Q Consensus       239 ~  239 (454)
                      .
T Consensus       269 ~  269 (283)
T cd06617         269 S  269 (283)
T ss_pred             c
Confidence            4

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.90  E-value=2.3e-24  Score=211.86  Aligned_cols=162  Identities=25%  Similarity=0.420  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||.|||+.||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       115 ~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~-------------------------~~  169 (297)
T cd06656         115 GQIAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP-------------------------EQ  169 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccC-------------------------Cc
Confidence            35778999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||.+.   +..++.++  |+||+              |+++|++++|.+               |+
T Consensus       170 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------Gvil~~l~tg~~---------------pf  215 (297)
T cd06656         170 SKRSTMVGTPYWMAPEVVT---RKAYGPKV--DIWSL--------------GIMAIEMVEGEP---------------PY  215 (297)
T ss_pred             cCcCcccCCccccCHHHHc---CCCCCcHH--HHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1223457899999999987   56677788  99999              999999877654               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      .................+... ..          ........+++     .+||..||++|||++++++||||....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~-~~----------~~~~~~~~~li-----~~~l~~~p~~Rps~~~il~~~~~~~~~  276 (297)
T cd06656         216 LNENPLRALYLIATNGTPELQ-NP----------ERLSAVFRDFL-----NRCLEMDVDRRGSAKELLQHPFLKLAK  276 (297)
T ss_pred             CCCCcchheeeeccCCCCCCC-Cc----------cccCHHHHHHH-----HHHccCChhhCcCHHHHhcCchhcccc
Confidence            111111111111111111100 00          11224556777     999999999999999999999998544

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.90  E-value=4.3e-24  Score=207.52  Aligned_cols=176  Identities=28%  Similarity=0.390  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++.....                          .
T Consensus       107 ~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~--------------------------~  160 (287)
T cd07838         107 ETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSF--------------------------E  160 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceeccC--------------------------C
Confidence            46789999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      .......++..|+|||++.   +..++.++  |+||+              ||++|+|+++.+..     .+.+...+..
T Consensus       161 ~~~~~~~~~~~~~~PE~~~---~~~~~~~~--Di~s~--------------G~~l~~l~~~~~~~~~~~~~~~~~~~~~~  221 (287)
T cd07838         161 MALTSVVVTLWYRAPEVLL---QSSYATPV--DMWSV--------------GCIFAELFRRRPLFRGTSEADQLDKIFDV  221 (287)
T ss_pred             cccccccccccccChHHhc---cCCCCCcc--hhhhH--------------HHHHHHHHhCCCcccCCChHHHHHHHHHH
Confidence            1223346788999999987   56678888  99999              99999987765421     1112111111


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...+........     .......++.... ..+.... ...++...+++     .+||+.||.+|||++|++.||||
T Consensus       222 ~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~li-----~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         222 IGLPSEEEWPRN-----VSLPRSSFPSYTP-RSFKSFV-PEICEEGLDLL-----KKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             cCCCChHhcCCC-----cccchhhcccccc-cchhhhh-hhhhHHHHHHH-----HHHhccCCccCCCHHHHhcCcCC
Confidence            111100000000     0000000010000 0000000 11235556777     99999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.90  E-value=6.1e-24  Score=212.71  Aligned_cols=180  Identities=27%  Similarity=0.381  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||.|||++|++||||||+||+++.++.+||+|||++.....                         ..
T Consensus       108 ~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~-------------------------~~  162 (337)
T cd07858         108 DHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSE-------------------------KG  162 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCC-------------------------Cc
Confidence            46788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      .......||..|+|||++..  ...++.++  |+||+              ||++|++++|++..     ...+......
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~l~~g~~pf~~~~~~~~~~~~~~~  224 (337)
T cd07858         163 DFMTEYVVTRWYRAPELLLN--CSEYTTAI--DVWSV--------------GCIFAELLGRKPLFPGKDYVHQLKLITEL  224 (337)
T ss_pred             ccccccccccCccChHHHhc--CCCCCCcc--cHHHH--------------HHHHHHHHcCCCCCCCCChHHHHHHHHHH
Confidence            22334578899999999862  23477777  99999              99999977765421     1111111111


Q ss_pred             cCCCCCCc-------hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTGS-------NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+.+....       ................+..         .. ...++.+.++|     ++||+.||++|||++|++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~-~~~~~~~~~li-----~~~l~~~P~~Rps~~ell  289 (337)
T cd07858         225 LGSPSEEDLGFIRNEKARRYIRSLPYTPRQSFAR---------LF-PHANPLAIDLL-----EKMLVFDPSKRITVEEAL  289 (337)
T ss_pred             hCCCChHHhhhcCchhhhHHHHhcCcccccCHHH---------Hc-ccCCHHHHHHH-----HHHhcCChhhccCHHHHH
Confidence            11111110       0111111111111111110         00 12236667888     999999999999999999


Q ss_pred             cCcccccCCC
Q psy7309         230 CQPISLEGSS  239 (454)
Q Consensus       230 ~hp~f~~~~~  239 (454)
                      +||||.....
T Consensus       290 ~h~~~~~~~~  299 (337)
T cd07858         290 AHPYLASLHD  299 (337)
T ss_pred             cCcchhhhcC
Confidence            9999986543

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.90  E-value=3.3e-24  Score=208.63  Aligned_cols=153  Identities=19%  Similarity=0.253  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.....                       ....
T Consensus       125 ~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------------------~~~~  181 (283)
T cd05091         125 DFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAA-----------------------DYYK  181 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCceEecccccccccccc-----------------------hhee
Confidence            46789999999999999999999999999999999999999999998754211                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+++.|+|||.+.   ...++.++  ||||+              ||+++||++ +.+               |+
T Consensus       182 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~~l~el~~~g~~---------------p~  227 (283)
T cd05091         182 LMGNSLLPIRWMSPEAIM---YGKFSIDS--DIWSY--------------GVVLWEVFSYGLQ---------------PY  227 (283)
T ss_pred             eccCccCCccccCHHHHh---cCCCCcch--hHHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            123345678999999987   56678888  99999              999999765 332               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.........+........+...             .....+++     .+||+.||.+|||+++++.
T Consensus       228 ~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~li-----~~cl~~~p~~RP~~~~i~~  278 (283)
T cd05091         228 CGYSNQDVIEMIRNRQVLPCPDDC-------------PAWVYTLM-----LECWNEFPSRRPRFKDIHS  278 (283)
T ss_pred             CCCCHHHHHHHHHcCCcCCCCCCC-------------CHHHHHHH-----HHHhCCCcccCCCHHHHHH
Confidence            222233333333333333333332             25566777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.90  E-value=4.2e-24  Score=212.89  Aligned_cols=108  Identities=17%  Similarity=0.251  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.++++|||.+.........                  .....
T Consensus       101 ~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~------------------~~~~~  162 (327)
T cd08227         101 LAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQR------------------LRVVH  162 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhcccccccc------------------ccccc
Confidence            357889999999999999999999999999999999999999999976543210000                  00001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      .......++..|+|||++... ...|+.++  ||||+              ||+++|+++|..
T Consensus       163 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~~~--Diwsl--------------G~il~el~~g~~  208 (327)
T cd08227         163 DFPKYSVKVLPWLSPEVLQQN-LQGYDAKS--DIYSV--------------GITACELANGHV  208 (327)
T ss_pred             cccccccceecccChHHhhcc-cCCCCchh--hHHHH--------------HHHHHHHHHCCC
Confidence            112234678889999998721 24578888  99999              999999776654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.90  E-value=5.1e-24  Score=203.53  Aligned_cols=155  Identities=32%  Similarity=0.423  Sum_probs=114.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..+++++.|++.||+|||++|++|+||||+||+++.++ .+||+|||.+.....                          
T Consensus       101 ~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~--------------------------  154 (256)
T cd08220         101 DTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSS--------------------------  154 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCC--------------------------
Confidence            35788999999999999999999999999999998655 579999999875421                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........|+..|+|||.+.   ...++.++  |+||+              |++++++++++.               |
T Consensus       155 ~~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~~l~~l~~~~~---------------~  200 (256)
T cd08220         155 KSKAYTVVGTPCYISPELCE---GKPYNQKS--DIWAL--------------GCVLYELASLKR---------------A  200 (256)
T ss_pred             CccccccccCCcccCchhcc---CCCCCccc--chHHH--------------HHHHHHHHhCCC---------------C
Confidence            11222357899999999987   55677778  99999              999999776543               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      +...+...............++..             .++...+++     .+||..||.+|||+.|+++||||
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         201 FEAANLPALVLKIMSGTFAPISDR-------------YSPDLRQLI-----LSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             cccCchHHHHHHHHhcCCCCCCCC-------------cCHHHHHHH-----HHHccCChhhCCCHHHHhhCCCC
Confidence            222222222222222222222222             226677888     99999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.90  E-value=4e-24  Score=204.70  Aligned_cols=156  Identities=34%  Similarity=0.492  Sum_probs=116.3

Q ss_pred             hhHHHHHHHHHHHHHHHH-----HcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIH-----SQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH-----~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      +.++.++.||+.||.|||     +.+++|+||||+||+++.++.+||+|||++.....                      
T Consensus       105 ~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~----------------------  162 (265)
T cd08217         105 EFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGH----------------------  162 (265)
T ss_pred             HHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccC----------------------
Confidence            467899999999999999     89999999999999999999999999999885531                      


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                         .........|++.|+|||++.   ...++.++  |+||+              |++++++++|..            
T Consensus       163 ---~~~~~~~~~~~~~~~~pE~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~------------  208 (265)
T cd08217         163 ---DSSFAKTYVGTPYYMSPEQLN---HMSYDEKS--DIWSL--------------GCLIYELCALSP------------  208 (265)
T ss_pred             ---CcccccccccCCCccChhhhc---CCCCCchh--HHHHH--------------HHHHHHHHHCCC------------
Confidence               111133457899999999987   55677788  99999              999999776543            


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                         |+...........+.......++..             .+....+++     .+||+.||++|||+.++++|||+
T Consensus       209 ---p~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~-----~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         209 ---PFTARNQLQLASKIKEGKFRRIPYR-------------YSSELNEVI-----KSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             ---cccCcCHHHHHHHHhcCCCCCCccc-------------cCHHHHHHH-----HHHccCCcccCCCHHHHhhCCCC
Confidence               2222222222222222222222222             125667787     99999999999999999999995

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.90  E-value=6e-24  Score=210.02  Aligned_cols=194  Identities=18%  Similarity=0.230  Sum_probs=116.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..+++|++.||+|||++||+||||||+||+++.++.+||+|||.+..........                  .....
T Consensus       102 ~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~------------------~~~~~  163 (314)
T cd08216         102 AIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQ------------------RVVHD  163 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccccccc------------------ccccc
Confidence            467899999999999999999999999999999999999999999987543210000                  01111


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhhc
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRRE  157 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~~  157 (454)
                      ......++..|+|||++... ...|+.++  |+||+              ||+++|+++|..+.     ...+...+...
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~-~~~~~~~~--Diws~--------------G~il~el~~g~~pf~~~~~~~~~~~~~~~~  226 (314)
T cd08216         164 FPKSSVKNLPWLSPEVLQQN-LQGYNEKS--DIYSV--------------GITACELANGHVPFKDMPATQMLLEKVRGT  226 (314)
T ss_pred             ccccccccccccCHHHhcCC-CCCCCcch--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHhcc
Confidence            22445678899999998621 23577777  99999              99999977655421     11111111100


Q ss_pred             CCCCCC-chhhhhhhhhccCC-CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         158 NGPSTG-SNVQKSLQKFQKSP-PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       158 ~~p~~~-~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ...... .............. ....+..  ...++.......+....+++     .+||+.||++|||++|+|+||||.
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~li-----~~~l~~~P~~Rpt~~~ll~~p~~~  299 (314)
T cd08216         227 VPCLLDKSTYPLYEDSMSQSRSSNEHPNN--RDSVDHPYTRTFSEHFHQFV-----ELCLQRDPESRPSASQLLNHSFFK  299 (314)
T ss_pred             CccccccCchhhhcCCcCcccccccccch--hhhhhcchhhHHHHHHHHHH-----HHHhhcCCCcCcCHHHHhcCchHh
Confidence            000000 00000000000000 0000000  00011111112224556677     999999999999999999999998


Q ss_pred             cCC
Q psy7309         236 EGS  238 (454)
Q Consensus       236 ~~~  238 (454)
                      ...
T Consensus       300 ~~~  302 (314)
T cd08216         300 QCK  302 (314)
T ss_pred             hhc
Confidence            654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.89  E-value=3.9e-24  Score=204.72  Aligned_cols=155  Identities=23%  Similarity=0.356  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||.|||++|++|+||+|+||+++.++.++|+|||++.....                         ...
T Consensus       102 ~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~-------------------------~~~  156 (256)
T cd08218         102 QILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNS-------------------------TVE  156 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCc-------------------------chh
Confidence            5688999999999999999999999999999999999999999999875421                         011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......|++.|+|||++.   +..++.++  |+||+              |++++++++|...               +.
T Consensus       157 ~~~~~~~~~~~~~pe~~~---~~~~~~~~--Dv~sl--------------G~i~~~l~~g~~~---------------~~  202 (256)
T cd08218         157 LARTCIGTPYYLSPEICE---NRPYNNKS--DIWAL--------------GCVLYEMCTLKHA---------------FE  202 (256)
T ss_pred             hhhhccCCccccCHHHhC---CCCCCCcc--chhHH--------------HHHHHHHHcCCCC---------------cc
Confidence            122356889999999987   56677777  99999              9999997776542               22


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ..........+........+..             .+....++|     .+||+.+|.+||++.++++||||
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         203 AGNMKNLVLKIIRGSYPPVSSH-------------YSYDLRNLV-----SQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             CCCHHHHHHHHhcCCCCCCccc-------------CCHHHHHHH-----HHHhhCChhhCcCHHHHhhCcCC
Confidence            2222222222222222222222             125667888     99999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.89  E-value=4.8e-25  Score=210.92  Aligned_cols=163  Identities=31%  Similarity=0.424  Sum_probs=112.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.+||++||+|+||||+||+++.++.++|+|||.+....                         ...
T Consensus        98 ~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~-------------------------~~~  152 (260)
T PF00069_consen   98 EEILKIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLS-------------------------ENN  152 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEEST-------------------------STT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccc-------------------------ccc
Confidence            4688999999999999999999999999999999999999999999987431                         122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......+|..|+|||++.  ....++.++  |+||+              |+++++|+++..               |+
T Consensus       153 ~~~~~~~~~~~y~aPE~~~--~~~~~~~~~--Di~sl--------------G~il~~l~~~~~---------------p~  199 (260)
T PF00069_consen  153 ENFNPFVGTPEYMAPEVLQ--QGKKYTRKS--DIWSL--------------GIILYELLTGKL---------------PF  199 (260)
T ss_dssp             SEBSSSSSSGGGSCHHHHT--TTSSBSTHH--HHHHH--------------HHHHHHHHHSSS---------------SS
T ss_pred             ccccccccccccccccccc--ccccccccc--ccccc--------------cccccccccccc---------------cc
Confidence            3445678899999999975  245677778  99999              999999766443               11


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...........+........+...  ..+     ........++|     .+||+.||++|||+.++++||||
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~l~~li-----~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  200 EESNSDDQLEIIEKILKRPLPSSS--QQS-----REKSEELRDLI-----KKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             TTSSHHHHHHHHHHHHHTHHHHHT--TSH-----TTSHHHHHHHH-----HHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             ccccchhhhhhhhhcccccccccc--ccc-----chhHHHHHHHH-----HHHccCChhHCcCHHHHhcCCCC
Confidence            111000000000000000000000  000     00114556666     99999999999999999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.89  E-value=5.3e-24  Score=205.37  Aligned_cols=159  Identities=26%  Similarity=0.402  Sum_probs=111.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++|++.||+|||++||+|+||||+||+++.++.+||+|||++.......                      ...
T Consensus       106 ~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~----------------------~~~  163 (266)
T cd06651         106 SVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTIC----------------------MSG  163 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCcccccccc----------------------ccC
Confidence            3567899999999999999999999999999999999999999999987542100                      011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.   +..++.++  |+||+              ||++||+++|+++.               
T Consensus       164 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~i~~el~~g~~pf---------------  209 (266)
T cd06651         164 TGIRSVTGTPYWMSPEVIS---GEGYGRKA--DVWSL--------------GCTVVEMLTEKPPW---------------  209 (266)
T ss_pred             CccccCCccccccCHHHhC---CCCCCchh--hhHHH--------------HHHHHHHHHCCCCc---------------
Confidence            1223356889999999987   56677788  99999              99999987765421               


Q ss_pred             CCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .............. ...+.+|..             .++...+++      +||..||++|||++|+++||||+
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li------~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         210 AEYEAMAAIFKIATQPTNPQLPSH-------------ISEHARDFL------GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             cccchHHHHHHHhcCCCCCCCchh-------------cCHHHHHHH------HHhcCChhhCcCHHHHhcCcccc
Confidence            11111111111111 111222222             124455555      46778999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.89  E-value=4.3e-24  Score=210.80  Aligned_cols=184  Identities=26%  Similarity=0.349  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc----CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY----EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~----~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .++.++.|++.||+|||++||+||||||+||+++.    ++.+||+|||++.......                      
T Consensus       109 ~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~----------------------  166 (316)
T cd07842         109 MVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPL----------------------  166 (316)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCc----------------------
Confidence            57899999999999999999999999999999999    8899999999998543210                      


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh------------
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT------------  146 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~------------  146 (454)
                      .........++|..|+|||++..  ...++.++  ||||+              |+++++++++++..            
T Consensus       167 ~~~~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~~l~~l~~~~~~~~~~~~~~~~~~~  228 (316)
T cd07842         167 KPLADLDPVVVTIWYRAPELLLG--ARHYTKAI--DIWAI--------------GCIFAELLTLEPIFKGREAKIKKSNP  228 (316)
T ss_pred             ccccccCCccccccccCHHHHhC--CCCCCcHH--HHHHH--------------HHHHHHHHhcCCCCcCCcccccccch
Confidence            00112334578999999998761  34577788  99999              88888877655421            


Q ss_pred             --HHHHHHHhhhcCCCCCCchhhh--hhhhhc----cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCC
Q psy7309         147 --LEELKHNIRRENGPSTGSNVQK--SLQKFQ----KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHD  218 (454)
Q Consensus       147 --~~~l~~~i~~~~~p~~~~~~~~--~~~~~~----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~d  218 (454)
                        ...+...+.....|... ....  ....+.    ......++.. ....|-. .....+....+++     .+||+.|
T Consensus       229 ~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~i-----~~~l~~~  300 (316)
T cd07842         229 FQRDQLERIFEVLGTPTEK-DWPDIKKMPEYDTLMKDFKTKTYPSN-SLAKWME-KHKKPDSQGFDLL-----RKLLEYD  300 (316)
T ss_pred             hHHHHHHHHHHHhCCCchh-HHHHHhhcccchhhhhhccCCCCCCc-cHHHHHH-hccCCCHHHHHHH-----HHHhcCC
Confidence              11222222222211111 0000  000000    0001111100 0000000 0012335566777     9999999


Q ss_pred             CCCCCChhhhhcCccc
Q psy7309         219 PSKRPSSEQNLCQPIS  234 (454)
Q Consensus       219 P~~Rpta~e~l~hp~f  234 (454)
                      |++|||+.|+++||||
T Consensus       301 P~~Rps~~eil~~~~f  316 (316)
T cd07842         301 PTKRITAEEALEHPYF  316 (316)
T ss_pred             cccCcCHHHHhcCCCC
Confidence            9999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=7.5e-24  Score=209.64  Aligned_cols=185  Identities=24%  Similarity=0.227  Sum_probs=121.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccC----CCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL----PPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   78 (454)
                      .++.++.|++.||+|||+.|++|+||||+||+++.++.++|+|||++....................    .........
T Consensus       104 ~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (316)
T cd05574         104 VARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETFSE  183 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhhcc
Confidence            5678899999999999999999999999999999999999999999875432111000000000000    000000000


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      .........+||..|+|||++.   +..++.++  ||||+              |+++|+++.|..              
T Consensus       184 ~~~~~~~~~~g~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~ll~~l~~g~~--------------  230 (316)
T cd05574         184 EPSFRSNSFVGTEEYIAPEVIS---GDGHGSAV--DWWTL--------------GILLYEMLYGTT--------------  230 (316)
T ss_pred             cccCCCCCCcCccCCcCHHHHc---CCCCCchH--HHHHH--------------HHHHHHHhhCCC--------------
Confidence            1122334568999999999987   56678888  99999              999999766543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC----hhhhhcCccc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS----SEQNLCQPIS  234 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt----a~e~l~hp~f  234 (454)
                       |+........+..+. .....++...           ..+....+++     ++||+.||++|||    ++|++.||||
T Consensus       231 -pf~~~~~~~~~~~~~-~~~~~~~~~~-----------~~~~~~~~li-----~~~l~~~p~~R~s~~~~~~~ll~~~~~  292 (316)
T cd05574         231 -PFKGSNRDETFSNIL-KKEVTFPGSP-----------PVSSSARDLI-----RKLLVKDPSKRLGSKRGAAEIKQHPFF  292 (316)
T ss_pred             -CCCCCchHHHHHHHh-cCCccCCCcc-----------ccCHHHHHHH-----HHHccCCHhHCCCchhhHHHHHcCchh
Confidence             222222222222222 1122222221           1236677888     9999999999999    9999999999


Q ss_pred             ccCC
Q psy7309         235 LEGS  238 (454)
Q Consensus       235 ~~~~  238 (454)
                      ....
T Consensus       293 ~~~~  296 (316)
T cd05574         293 RGVN  296 (316)
T ss_pred             hcCC
Confidence            8644

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.89  E-value=7.1e-24  Score=206.07  Aligned_cols=175  Identities=27%  Similarity=0.314  Sum_probs=116.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||+|+||+++.++.++|+|||++.....                         ..
T Consensus        99 ~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~-------------------------~~  153 (283)
T cd07835          99 PLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGV-------------------------PV  153 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCC-------------------------Cc
Confidence            35788999999999999999999999999999999999999999999874321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......++..|+|||++..  ...++.++  |+||+              |+++|++++|.+.     ...++...+..
T Consensus       154 ~~~~~~~~~~~~~aPE~~~~--~~~~~~~~--Di~sl--------------G~~l~~l~~g~~pf~~~~~~~~~~~~~~~  215 (283)
T cd07835         154 RTYTHEVVTLWYRAPEILLG--SRQYSTPV--DIWSI--------------GCIFAEMVNRRPLFPGDSEIDQLFRIFRT  215 (283)
T ss_pred             cccCccccccCCCCCceeec--CcccCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            12233467889999998862  23467777  99999              9999997776542     22333333333


Q ss_pred             cCCCCCCch-h----hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         157 ENGPSTGSN-V----QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       157 ~~~p~~~~~-~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      ...|..... .    ......+...........          ....+..+.+++     .+||+.||.+|||++|++.|
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~li-----~~~l~~~P~~Rpt~~~il~~  280 (283)
T cd07835         216 LGTPDEDVWPGVTSLPDYKPTFPKWARQDLSKV----------VPNLDEDGLDLL-----SKMLVYDPAKRISAKAALQH  280 (283)
T ss_pred             hCCCChHHhhhhhhchhhhhhcccccccchhhh----------cCCCCHHHHHHH-----HHHhcCChhhCcCHHHHhcC
Confidence            222221110 0    000001110000000000          012235666777     99999999999999999999


Q ss_pred             ccc
Q psy7309         232 PIS  234 (454)
Q Consensus       232 p~f  234 (454)
                      |||
T Consensus       281 ~~~  283 (283)
T cd07835         281 PYF  283 (283)
T ss_pred             CCC
Confidence            998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.89  E-value=1e-23  Score=202.70  Aligned_cols=157  Identities=25%  Similarity=0.332  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++|++|+||||+||+++.++.+||+|||++.....                          .
T Consensus        93 ~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~--------------------------~  146 (262)
T cd05572          93 YTARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKS--------------------------G  146 (262)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCc--------------------------c
Confidence            35778999999999999999999999999999999999999999999875431                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||.+.   ...++.++  |+||+              |+++|++++|..               |+
T Consensus       147 ~~~~~~~~~~~~~~PE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p~  192 (262)
T cd05572         147 QKTWTFCGTPEYVAPEIIL---NKGYDFSV--DYWSL--------------GILLYELLTGRP---------------PF  192 (262)
T ss_pred             cccccccCCcCccChhHhc---CCCCCChh--hhhhh--------------HHHHHHHHhCCC---------------Cc
Confidence            1223457889999999987   56678888  99999              999999766543               22


Q ss_pred             CCch--hhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCcc
Q psy7309         162 TGSN--VQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPI  233 (454)
Q Consensus       162 ~~~~--~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~  233 (454)
                      ....  .......+.. .....+|...             ++...++|     .+||+.||.+|||     ++|+++|||
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i-----~~~l~~~p~~R~~~~~~~~~~l~~~~~  254 (262)
T cd05572         193 GEDDEDPMEIYNDILKGNGKLEFPNYI-------------DKAAKDLI-----KQLLRRNPEERLGNLKGGIKDIKKHKW  254 (262)
T ss_pred             CCCCCCHHHHHHHHhccCCCCCCCccc-------------CHHHHHHH-----HHHccCChhhCcCCcccCHHHHhcChh
Confidence            1111  1122222221 1222233221             36677888     9999999999999     999999999


Q ss_pred             ccc
Q psy7309         234 SLE  236 (454)
Q Consensus       234 f~~  236 (454)
                      |..
T Consensus       255 ~~~  257 (262)
T cd05572         255 FNG  257 (262)
T ss_pred             hhC
Confidence            984

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.89  E-value=8e-24  Score=208.21  Aligned_cols=190  Identities=24%  Similarity=0.290  Sum_probs=119.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|+++||+|||++||+|+||||+||+++.++.+||+|||++...........            ..  .....
T Consensus       115 ~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~------------~~--~~~~~  180 (311)
T cd07866         115 SQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPK------------GG--GGGGT  180 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccc------------cC--Ccccc
Confidence            46889999999999999999999999999999999999999999999985532110000            00  00122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      ...+...||+.|+|||++..  ...++.++  ||||+              |+++|||++|.+..     ...+...+..
T Consensus       181 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~il~el~~g~~~~~~~~~~~~~~~~~~~  242 (311)
T cd07866         181 RKYTNLVVTRWYRPPELLLG--ERRYTTAV--DIWGI--------------GCVFAEMFTRRPILQGKSDIDQLHLIFKL  242 (311)
T ss_pred             cccccceeccCcCChHHhhC--CCccCchh--HhHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            33456688999999999762  34577778  99999              99999987766521     1222222222


Q ss_pred             cCCCCCCc-hhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGS-NVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~-~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...+.... .....+..... ......+..     +.... ....+...+++     .+||+.||.+|||+.|++.||||
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~i-----~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         243 CGTPTEETWPGWRSLPGCEGVHSFTNYPRT-----LEERF-GKLGPEGLDLL-----SKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             hCCCChhhchhhhhcccccccccCCCCCcc-----HHHHc-ccCChhHHHHH-----HHHcccCcccCcCHHHHhcCCCC
Confidence            22221111 00000000000 000000100     00000 11124555677     99999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.89  E-value=1.1e-23  Score=202.68  Aligned_cols=164  Identities=20%  Similarity=0.291  Sum_probs=115.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||+.||+|+||||+||+++.++.+||+|||++..........                   ...
T Consensus       102 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~-------------------~~~  162 (265)
T cd06631         102 PVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHG-------------------THS  162 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccc-------------------ccc
Confidence            3578899999999999999999999999999999999999999999998653210000                   011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++.   +..++.++  |+||+              |++++++++|..+.               
T Consensus       163 ~~~~~~~~~~~~~~pe~~~---~~~~~~~~--Dv~sl--------------G~~~~~l~~g~~p~---------------  208 (265)
T cd06631         163 NMLKSMHGTPYWMAPEVIN---ESGYGRKS--DIWSI--------------GCTVFEMATGKPPL---------------  208 (265)
T ss_pred             ccccccCCCccccChhhhc---CCCCcchh--hHHHH--------------HHHHHHHHhCCCcc---------------
Confidence            1223457899999999987   56677888  99999              99999987765421               


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ............... ....+...          ...+....++|     ++||+.||.+|||+.|+++||||
T Consensus       209 ~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~i-----~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         209 ASMDRLAAMFYIGAH-RGLMPRLP----------DSFSAAAIDFV-----TSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             ccCChHHHHHHhhhc-cCCCCCCC----------CCCCHHHHHHH-----HHHhcCCcccCCCHHHHhcCCCC
Confidence            111111111111101 00111111          11225667788     99999999999999999999997

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.89  E-value=8.3e-24  Score=212.57  Aligned_cols=178  Identities=29%  Similarity=0.367  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++....                            
T Consensus       120 ~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~----------------------------  171 (345)
T cd07877         120 DHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD----------------------------  171 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEeccccccccc----------------------------
Confidence            4678899999999999999999999999999999999999999999987432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      .......||..|+|||++..  ...++.++  |+||+              ||+++++++|++..     ...+...+..
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dvwsl--------------G~il~el~~g~~pf~~~~~~~~~~~~~~~  233 (345)
T cd07877         172 DEMTGYVATRWYRAPEIMLN--WMHYNQTV--DIWSV--------------GCIMAELLTGRTLFPGTDHIDQLKLILRL  233 (345)
T ss_pred             ccccccccCCCccCHHHHhC--ccCCCchh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            12234578899999999761  24577778  99999              99999977765421     1222222221


Q ss_pred             cCCCCCCc-------hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTGS-------NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      ...+....       ........+.......+....          ...++...++|     .+||+.||.+|||+.+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~li-----~~~L~~dp~~R~t~~e~l  298 (345)
T cd07877         234 VGTPGAELLKKISSESARNYIQSLTQMPKMNFANVF----------IGANPLAVDLL-----EKMLVLDSDKRITAAQAL  298 (345)
T ss_pred             hCCCCHHHHhhcccHhHHHHHHHhcccCCcchhhhc----------CCCCHHHHHHH-----HHHcCCChhhcCCHHHHh
Confidence            11111100       000111111111111111110          01235667788     999999999999999999


Q ss_pred             cCcccccCCCC
Q psy7309         230 CQPISLEGSSS  240 (454)
Q Consensus       230 ~hp~f~~~~~~  240 (454)
                      .||||.+...+
T Consensus       299 ~h~~f~~~~~~  309 (345)
T cd07877         299 AHAYFAQYHDP  309 (345)
T ss_pred             cChhhhhcCCC
Confidence            99999976654

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.89  E-value=4.3e-24  Score=205.29  Aligned_cols=162  Identities=27%  Similarity=0.375  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..+++++.|++.||+|||+ .|++|+||||+||+++.++.+||+|||.+......                         
T Consensus       100 ~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~-------------------------  154 (265)
T cd06605         100 RILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNS-------------------------  154 (265)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHH-------------------------
Confidence            3568899999999999999 99999999999999999999999999998765321                         


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                        ......|+..|+|||.+.   +..++.++  |+||+              |++++++++|..+....-          
T Consensus       155 --~~~~~~~~~~y~~PE~~~---~~~~~~~~--Dv~sl--------------G~~l~~l~~g~~p~~~~~----------  203 (265)
T cd06605         155 --LAKTFVGTSSYMAPERIQ---GNDYSVKS--DIWSL--------------GLSLIELATGRFPYPPEN----------  203 (265)
T ss_pred             --HhhcccCChhccCHHHHc---CCCCCchh--hHHHH--------------HHHHHHHHhCCCCCCccc----------
Confidence              011167889999999987   56788888  99999              999999776553210000          


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ............+.....+..+..            ..++...++|     .+||..||++|||+.|++.||||+.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~li-----~~~l~~~p~~Rpt~~~ll~~~~~~~  262 (265)
T cd06605         204 DPPDGIFELLQYIVNEPPPRLPSG------------KFSPDFQDFV-----NLCLIKDPRERPSYKELLEHPFIKK  262 (265)
T ss_pred             cccccHHHHHHHHhcCCCCCCChh------------hcCHHHHHHH-----HHHcCCCchhCcCHHHHhhCchhhc
Confidence            000111122222222222222222            0225567787     9999999999999999999999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=8.2e-24  Score=202.81  Aligned_cols=162  Identities=27%  Similarity=0.396  Sum_probs=113.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       101 ~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~-------------------------~~  155 (262)
T cd06613         101 LQIAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTA-------------------------TI  155 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhh-------------------------hh
Confidence            35788999999999999999999999999999999999999999999876532                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.......++.++  |+||+              |+++++|++|.++               +
T Consensus       156 ~~~~~~~~~~~y~~Pe~~~~~~~~~~~~~~--Di~sl--------------G~~l~~~~tg~~p---------------~  204 (262)
T cd06613         156 AKRKSFIGTPYWMAPEVAAVERKGGYDGKC--DIWAL--------------GITAIELAELQPP---------------M  204 (262)
T ss_pred             hccccccCCccccCchhhcccccCCcCchh--hhHHH--------------HHHHHHHHhCCCC---------------C
Confidence            123345789999999998722123677788  99999              9999998776542               2


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      ................ ...+...  ..      ...+....+++     ++||..||.+|||+.+++.|+|
T Consensus       205 ~~~~~~~~~~~~~~~~-~~~~~~~--~~------~~~~~~~~~li-----~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         205 FDLHPMRALFLISKSN-FPPPKLK--DK------EKWSPVFHDFI-----KKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             CCCCHHHHHHHHHhcc-CCCcccc--ch------hhhhHHHHHHH-----HHHcCCChhhCCCHHHHhcCCC
Confidence            1111111111111110 0000000  00      01124556777     9999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=7e-24  Score=205.48  Aligned_cols=163  Identities=27%  Similarity=0.411  Sum_probs=118.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||+.||+|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       101 ~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~-------------------------~~  155 (277)
T cd06917         101 KYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQ-------------------------NS  155 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCC-------------------------Cc
Confidence            46788999999999999999999999999999999999999999999875431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+..  +..++.++  |+||+              |+++|++++|.+               |+
T Consensus       156 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~~l~~ll~g~~---------------p~  202 (277)
T cd06917         156 SKRSTFVGTPYWMAPEVITE--GKYYDTKA--DIWSL--------------GITIYEMATGNP---------------PY  202 (277)
T ss_pred             cccccccCCcceeCHHHhcc--CCccccch--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            22334578999999999862  34567778  99999              999999776554               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...........+.......++..            .......+++     .+||+.||++|||+.|++.||||.+...
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~i-----~~~l~~~p~~R~~~~~il~~~~~~~~~~  263 (277)
T cd06917         203 SDVDAFRAMMLIPKSKPPRLEDN------------GYSKLLREFV-----AACLDEEPKERLSAEELLKSKWIKAHSK  263 (277)
T ss_pred             CCCChhhhhhccccCCCCCCCcc------------cCCHHHHHHH-----HHHcCCCcccCcCHHHHhhChHhhcccc
Confidence            22222111111111111111111            1225566777     9999999999999999999999986553

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.89  E-value=1.1e-23  Score=206.07  Aligned_cols=155  Identities=26%  Similarity=0.304  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+|+||||.|||++.++.+||+|||++.....                           
T Consensus       101 ~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~---------------------------  153 (290)
T cd05580         101 PVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKG---------------------------  153 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCC---------------------------
Confidence            35778999999999999999999999999999999999999999999875421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       ......|++.|+|||.+.   +..++.++  |+||+              |++++++++|..               |+
T Consensus       154 -~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p~  198 (290)
T cd05580         154 -RTYTLCGTPEYLAPEIIL---SKGYGKAV--DWWAL--------------GILIYEMLAGYP---------------PF  198 (290)
T ss_pred             -CCCCCCCCccccChhhhc---CCCCCccc--cHHHH--------------HHHHHHHHhCCC---------------CC
Confidence             123457899999999987   55677788  99999              999999776553               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      ...........+. .....+|...             ++...++|     .+||..||.+|+     +++|+++||||..
T Consensus       199 ~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~l~~li-----~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~  259 (290)
T cd05580         199 FDDNPIQIYEKIL-EGKVRFPSFF-------------SPDAKDLI-----RNLLQVDLTKRLGNLKNGVNDIKNHPWFAG  259 (290)
T ss_pred             CCCCHHHHHHHHh-cCCccCCccC-------------CHHHHHHH-----HHHccCCHHHccCcccCCHHHHHcCccccc
Confidence            2222222222222 2223333331             26667888     999999999999     9999999999975


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       260 ~  260 (290)
T cd05580         260 I  260 (290)
T ss_pred             C
Confidence            3

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.89  E-value=7.1e-24  Score=204.31  Aligned_cols=162  Identities=26%  Similarity=0.398  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       106 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~-------------------------~~  160 (267)
T cd06646         106 LQIAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITA-------------------------TI  160 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecc-------------------------cc
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||.+.......++.++  |+||+              |+++||+++++++..              
T Consensus       161 ~~~~~~~~~~~y~~PE~~~~~~~~~~~~~~--Dvws~--------------G~il~el~~g~~p~~--------------  210 (267)
T cd06646         161 AKRKSFIGTPYWMAPEVAAVEKNGGYNQLC--DIWAV--------------GITAIELAELQPPMF--------------  210 (267)
T ss_pred             cccCccccCccccCHhHcccccCCCCcchh--hHHHH--------------HHHHHHHHhCCCCcc--------------
Confidence            122345789999999998532245567777  99999              999999877654221              


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                       ..........+. ......+....        ....+..+.+++     ++||..||.+|||++++++|+|
T Consensus       211 -~~~~~~~~~~~~-~~~~~~~~~~~--------~~~~~~~~~~li-----~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         211 -DLHPMRALFLMS-KSNFQPPKLKD--------KTKWSSTFHNFV-----KISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             -ccchhhhheeee-cCCCCCCCCcc--------ccccCHHHHHHH-----HHHhhCChhhCcCHHHHhcCCC
Confidence             110000011111 00111111000        011235667788     9999999999999999999987

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.89  E-value=9.8e-24  Score=200.99  Aligned_cols=156  Identities=29%  Similarity=0.397  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||.+.....                         ..
T Consensus       103 ~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~-------------------------~~  157 (258)
T cd08215         103 EQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSS-------------------------TV  157 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeeccc-------------------------Cc
Confidence            36788999999999999999999999999999999999999999999875431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||...   ...++.++  |+||+              |+++++++.+..               |+
T Consensus       158 ~~~~~~~~~~~y~~pe~~~---~~~~~~~~--Dv~sl--------------G~~~~~l~~g~~---------------p~  203 (258)
T cd08215         158 DLAKTVVGTPYYLSPELCQ---NKPYNYKS--DIWSL--------------GCVLYELCTLKH---------------PF  203 (258)
T ss_pred             ceecceeeeecccChhHhc---cCCCCccc--cHHHH--------------HHHHHHHHcCCC---------------CC
Confidence            1223357899999999987   56677888  99999              999999766543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...................++..             .+....+++     ++||..||.+|||+.|+|+||||
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         204 EGENLLELALKILKGQYPPIPSQ-------------YSSELRNLV-----SSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             CCCcHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHhcCCCC
Confidence            22222222223322222223322             125566777     99999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.89  E-value=8.6e-24  Score=203.51  Aligned_cols=164  Identities=26%  Similarity=0.364  Sum_probs=114.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++ .+||+|||.+........                     ..
T Consensus       103 ~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~---------------------~~  161 (268)
T cd06630         103 AVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGT---------------------GA  161 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccccccccc---------------------cC
Confidence            45788999999999999999999999999999998776 599999999876532100                     11


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........||..|+|||++.   +..++.++  |+||+              |++++++++|..+....           
T Consensus       162 ~~~~~~~~~~~~~~~PE~~~---~~~~~~~~--Dv~sl--------------G~~l~~l~~g~~p~~~~-----------  211 (268)
T cd06630         162 GEFQGQLLGTIAFMAPEVLR---GEQYGRSC--DVWSV--------------GCVIIEMATAKPPWNAE-----------  211 (268)
T ss_pred             CccccccccccceeCHhHhc---cCCCCccc--chHHH--------------HHHHHHHHhCCCCCCCC-----------
Confidence            11233457899999999987   56778888  99999              99999977665421000           


Q ss_pred             CCCchhhhhhhhh-ccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         161 STGSNVQKSLQKF-QKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       161 ~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                       ............ ........+..             .++...+++     .+||..||.+|||+.++++||||.
T Consensus       212 -~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         212 -KHSNHLALIFKIASATTAPSIPEH-------------LSPGLRDVT-----LRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             -CCcchHHHHHHHhccCCCCCCchh-------------hCHHHHHHH-----HHHcCCCcccCcCHHHHhcCcccC
Confidence             000001111111 11111222221             236667788     999999999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.89  E-value=1.8e-23  Score=200.21  Aligned_cols=152  Identities=26%  Similarity=0.389  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+++++.|++.||.|||++||+|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       100 ~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~-------------------------~~  154 (255)
T cd08219         100 DTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTS-------------------------PG  154 (255)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeecc-------------------------cc
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||++.   +..++.++  |+||+              |+++|+|++|..               |+
T Consensus       155 ~~~~~~~~~~~~~aPE~~~---~~~~~~~~--Dv~sl--------------G~i~~~l~~g~~---------------p~  200 (255)
T cd08219         155 AYACTYVGTPYYVPPEIWE---NMPYNNKS--DIWSL--------------GCILYELCTLKH---------------PF  200 (255)
T ss_pred             cccccccCCccccCHHHHc---cCCcCchh--hhhhh--------------chhheehhhccC---------------CC
Confidence            1233457899999999987   56678888  99999              999999877543               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...+.......+........+..             .+....+++     ++||+.||.+|||+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~P~~Rp~~~~il~  251 (255)
T cd08219         201 QANSWKNLILKVCQGSYKPLPSH-------------YSYELRSLI-----KQMFKRNPRSRPSATTILS  251 (255)
T ss_pred             CCCCHHHHHHHHhcCCCCCCCcc-------------cCHHHHHHH-----HHHHhCCcccCCCHHHHhh
Confidence            33333333333332322222222             124566777     9999999999999998875

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>KOG1027|consensus

Probab=99.89  E-value=1.1e-23  Score=220.04  Aligned_cols=159  Identities=30%  Similarity=0.372  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC---C--CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE---D--HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~---~--~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+.++.|++.||+|||+.+||||||||.||||+..   +  .++|+|||+++.+....                      
T Consensus       608 ~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~----------------------  665 (903)
T KOG1027|consen  608 PISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGK----------------------  665 (903)
T ss_pred             HHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCc----------------------
Confidence            57789999999999999999999999999999873   3  58999999999775321                      


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-chhhHHHHHHHhhhc
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-RPKTLEELKHNIRRE  157 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-~~~~~~~l~~~i~~~  157 (454)
                      +.-....+..||..|+|||++.   ...-+..+  ||+|+              ||++|.+++| .-+.-+.+.+.    
T Consensus       666 sS~~r~s~~sGt~GW~APE~L~---~~~~~~av--DiFsl--------------GCvfyYvltgG~HpFGd~~~R~----  722 (903)
T KOG1027|consen  666 SSFSRLSGGSGTSGWQAPEQLR---EDRKTQAV--DIFSL--------------GCVFYYVLTGGSHPFGDSLERQ----  722 (903)
T ss_pred             chhhcccCCCCcccccCHHHHh---ccccCccc--chhhc--------------CceEEEEecCCccCCCchHHhh----
Confidence            2223366788999999999998   45556677  99999              9999996654 32222222110    


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                                   .++. .....+-...         +.. ..++.+||     .+||+.||..||||.++|.||+|=.
T Consensus       723 -------------~NIl-~~~~~L~~L~---------~~~-d~eA~dLI-----~~ml~~dP~~RPsa~~VL~HPlFW~  772 (903)
T KOG1027|consen  723 -------------ANIL-TGNYTLVHLE---------PLP-DCEAKDLI-----SRMLNPDPQLRPSATDVLNHPLFWD  772 (903)
T ss_pred             -------------hhhh-cCccceeeec---------cCc-hHHHHHHH-----HHhcCCCcccCCCHHHHhCCCccCC
Confidence                         0011 1111111110         011 12778898     9999999999999999999999953

>KOG2345|consensus

Probab=99.89  E-value=2.7e-24  Score=197.04  Aligned_cols=166  Identities=23%  Similarity=0.252  Sum_probs=115.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           3 RAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ++.+|+.+|++||++||+..  ++||||||.|||+...+.++|.|||.++...-...                .++....
T Consensus       128 ~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~----------------~~~~a~~  191 (302)
T KOG2345|consen  128 QILWIFLGICRGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIE----------------GSRQALR  191 (302)
T ss_pred             HHHHHHHHHHHHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccceEee----------------chHHHHH
Confidence            67899999999999999998  99999999999999999999999999885421100                0000011


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeee-ecCCchhhHHHHHHHhhhcCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAE-VYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~e-l~~~~~~~~~~l~~~i~~~~~  159 (454)
                      -........|..|+|||.+.-..+...+.++  |||||              ||++|+ |+...|.....      ..++
T Consensus       192 lQe~a~e~Ct~pyRAPELf~vk~~~ti~ert--DIWSL--------------GCtLYa~mf~~sPfe~~~------~~Gg  249 (302)
T KOG2345|consen  192 LQEWAEERCTIPYRAPELFNVKSHCTITERT--DIWSL--------------GCTLYAMMFGESPFERIY------QQGG  249 (302)
T ss_pred             HHHHHHHhCCCcccCchheecccCccccccc--chhhh--------------hHHHHHHHHcCCcchHHh------hcCC
Confidence            1223345679999999999765667778888  99999              888888 55544422111      0111


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .         +.--..+....+|...           ..++...++|     ++||+.||.+||++.+++.+
T Consensus       250 S---------laLAv~n~q~s~P~~~-----------~yse~l~~li-----k~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  250 S---------LALAVQNAQISIPNSS-----------RYSEALHQLI-----KSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             e---------EEEeeeccccccCCCC-----------CccHHHHHHH-----HHHhcCCcccCCCHHHHHHH
Confidence            0         0001113344445442           2347777888     99999999999999988764

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.89  E-value=1.1e-23  Score=204.64  Aligned_cols=170  Identities=28%  Similarity=0.377  Sum_probs=121.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.+||+|||.+.....                          .
T Consensus        95 ~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~--------------------------~  148 (277)
T cd05577          95 ARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKG--------------------------G  148 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhcc--------------------------C
Confidence            35778899999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||++.   +..++.++  |+||+              |+++|++++|+.+               +
T Consensus       149 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~p---------------~  194 (277)
T cd05577         149 KKIKGRAGTPGYMAPEVLQ---GEVYDFSV--DWFAL--------------GCTLYEMIAGRSP---------------F  194 (277)
T ss_pred             CccccccCCCCcCCHHHhc---CCCCCchh--hhHHH--------------HHHHHHHhhCCCC---------------C
Confidence            1223456788999999987   45578888  99999              9999997766542               1


Q ss_pred             CCch----hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCc
Q psy7309         162 TGSN----VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQP  232 (454)
Q Consensus       162 ~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp  232 (454)
                      ....    ......... .....++..             .++...++|     ++||+.||.+||     ++.+++.||
T Consensus       195 ~~~~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~R~~~~~~~~~~ll~h~  255 (277)
T cd05577         195 RQRKEKVEKEELKRRTL-EMAVEYPDK-------------FSPEAKDLC-----EALLQKDPEKRLGCRGGSADEVREHP  255 (277)
T ss_pred             CCCcccccHHHHHhccc-cccccCCcc-------------CCHHHHHHH-----HHHccCChhHccCCCcccHHHHHhCh
Confidence            1110    001111111 111122221             236677888     999999999999     888899999


Q ss_pred             ccccCCCCCCCccCccccccCCCCCC
Q psy7309         233 ISLEGSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       233 ~f~~~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                      ||..        ++|+.+-+....|+
T Consensus       256 ~~~~--------~~~~~~~~~~~~~~  273 (277)
T cd05577         256 LFKD--------LNWRRLEAGMLEPP  273 (277)
T ss_pred             hhhc--------CChhhhhcCCCCCC
Confidence            9974        44555554444443

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.89  E-value=5.6e-24  Score=206.44  Aligned_cols=159  Identities=28%  Similarity=0.426  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       101 ~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~-------------------------~~  155 (277)
T cd06642         101 TYIATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD-------------------------TQ  155 (277)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccC-------------------------cc
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||++.   +..++.++  |+||+              |++++|+++|+++..              
T Consensus       156 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~el~tg~~p~~--------------  202 (277)
T cd06642         156 IKRNTFVGTPFWMAPEVIK---QSAYDFKA--DIWSL--------------GITAIELAKGEPPNS--------------  202 (277)
T ss_pred             hhhhcccCcccccCHHHhC---cCCCchhh--hHHHH--------------HHHHHHHHhCCCCCc--------------
Confidence            1223356889999999987   56677788  99999              999999877665321              


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       ..........+.......++.             ..+....+++     .+||+.+|.+|||+.++++||||...
T Consensus       203 -~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~li-----~~~l~~~p~~Rp~~~~il~~~~~~~~  259 (277)
T cd06642         203 -DLHPMRVLFLIPKNSPPTLEG-------------QYSKPFKEFV-----EACLNKDPRFRPTAKELLKHKFITRY  259 (277)
T ss_pred             -ccchhhHHhhhhcCCCCCCCc-------------ccCHHHHHHH-----HHHccCCcccCcCHHHHHHhHHHHHH
Confidence             111111111111111111111             1224566777     99999999999999999999999753

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.89  E-value=1.4e-23  Score=200.84  Aligned_cols=156  Identities=28%  Similarity=0.390  Sum_probs=115.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       101 ~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~-------------------------~~  155 (256)
T cd08221         101 EMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGS-------------------------EY  155 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEccc-------------------------cc
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  |+||+              |++++|++++..               |+
T Consensus       156 ~~~~~~~~~~~y~ape~~~---~~~~~~~~--Dv~sl--------------G~i~~~l~~g~~---------------~~  201 (256)
T cd08221         156 SMAETVVGTPYYMSPELCQ---GVKYNFKS--DIWAL--------------GCVLYELLTLKR---------------TF  201 (256)
T ss_pred             ccccccCCCccccCHhhcC---CCCCCCcc--hhHHH--------------HHHHHHHHHCCC---------------CC
Confidence            1233457899999999987   55677778  99999              999999766543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...........+........+..             .+....+++     .+||..||.+|||+.++++|||+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         202 DATNPLNLVVKIVQGNYTPVVSV-------------YSSELISLV-----HSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             CCCCHHHHHHHHHcCCCCCCccc-------------cCHHHHHHH-----HHHcccCcccCCCHHHHhhCcCC
Confidence            22222222222222211111111             125567777     99999999999999999999985

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.89  E-value=7.9e-24  Score=204.39  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.|++.||+|||++||+||||||+|||++.++.+||+|||+++.....                       ....
T Consensus       113 ~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------------------~~~~  169 (272)
T cd05075         113 MLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNG-----------------------DYYR  169 (272)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccccCcc-----------------------ccee
Confidence            47889999999999999999999999999999999999999999999854321                       0001


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+++.|+|||...   ...++.++  ||||+              |+++||+++ +.+               |+
T Consensus       170 ~~~~~~~~~~~~~pe~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p~  215 (272)
T cd05075         170 QGRIAKMPVKWIAIESLA---DRVYTTKS--DVWSF--------------GVTMWEIATRGQT---------------PY  215 (272)
T ss_pred             cCCcccCCcccCCHHHcc---CCCcChHH--HHHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            112234577899999987   56788888  99999              999999765 332               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...........+........+..             ......+++     .+||+.||.+|||+.++++
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~l~~  266 (272)
T cd05075         216 PGVENSEIYDYLRQGNRLKQPPD-------------CLDGLYSLM-----SSCWLLNPKDRPSFETLRC  266 (272)
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCCcccCcCHHHHHH
Confidence            22222223333332222222222             124566777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.89  E-value=1.2e-23  Score=205.02  Aligned_cols=162  Identities=25%  Similarity=0.390  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||.|||+ +||+||||||+||+++.++.+||+|||++.....                          
T Consensus       102 ~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~--------------------------  155 (286)
T cd06622         102 DVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVA--------------------------  155 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccC--------------------------
Confidence            3678999999999999997 5999999999999999999999999999875421                          


Q ss_pred             CCCCcCcccccceecccccccc---ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          81 DTSHTGQVGTALYAAPELDSHG---VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~---~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                       .......|++.|+|||++...   ....++.++  |+||+              ||++|++++|..+            
T Consensus       156 -~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~--Diwsl--------------G~il~~l~~g~~p------------  206 (286)
T cd06622         156 -SLAKTNIGCQSYMAPERIKSGGPNQNPTYTVQS--DVWSL--------------GLSILEMALGRYP------------  206 (286)
T ss_pred             -CccccCCCccCccCcchhcCCCCCccCCCCccc--chHhH--------------HHHHHHHHhCCCC------------
Confidence             112334688899999998521   123456677  99999              9999997765532            


Q ss_pred             CCCCCCchhh---hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         158 NGPSTGSNVQ---KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       158 ~~p~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                         +......   ..+..+.......++..             .++...++|     .+||+.||++||++++++.||||
T Consensus       207 ---f~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~l~~~~~~  265 (286)
T cd06622         207 ---YPPETYANIFAQLSAIVDGDPPTLPSG-------------YSDDAQDFV-----AKCLNKIPNRRPTYAQLLEHPWL  265 (286)
T ss_pred             ---CCCcchhhHHHHHHHHhhcCCCCCCcc-------------cCHHHHHHH-----HHHcccCcccCCCHHHHhcChhh
Confidence               1111111   11112222222223322             226667888     99999999999999999999999


Q ss_pred             ccCCC
Q psy7309         235 LEGSS  239 (454)
Q Consensus       235 ~~~~~  239 (454)
                      .....
T Consensus       266 ~~~~~  270 (286)
T cd06622         266 VKYKN  270 (286)
T ss_pred             hhccC
Confidence            86543

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.89  E-value=3.7e-23  Score=205.20  Aligned_cols=192  Identities=23%  Similarity=0.312  Sum_probs=132.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++....                            
T Consensus       125 ~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~----------------------------  176 (317)
T cd06635         125 VEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIAS----------------------------  176 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccC----------------------------
Confidence            3577899999999999999999999999999999999999999999876331                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       ......|++.|+|||.+.......++.++  |+||+              |++++|+++|.++               +
T Consensus       177 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~~--Dv~sl--------------Gvil~el~~g~~p---------------~  224 (317)
T cd06635         177 -PANSFVGTPYWMAPEVILAMDEGQYDGKV--DVWSL--------------GITCIELAERKPP---------------L  224 (317)
T ss_pred             -CcccccCCccccChhhhhcCCCCCCCccc--cHHHH--------------HHHHHHHHhCCCC---------------C
Confidence             11234688899999997522245677788  99999              9999998776542               2


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSG  241 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~  241 (454)
                      ...........+........+..            ..++...+++     .+||+.+|.+|||+.++++|+|+.......
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~li-----~~~l~~~p~~Rpt~~~il~~~~~~~~~~~~  287 (317)
T cd06635         225 FNMNAMSALYHIAQNESPTLQSN------------EWSDYFRNFV-----DSCLQKIPQDRPTSEELLKHMFVLRERPET  287 (317)
T ss_pred             CCccHHHHHHHHHhccCCCCCCc------------cccHHHHHHH-----HHHccCCcccCcCHHHHHhChhhhccCccc
Confidence            22111122222221222111111            1125567777     999999999999999999999997644321


Q ss_pred             CCccCccccccCCCCCCCCcchHHHHHHHHHHhcCCCChhHHHHHHHHh
Q psy7309         242 LSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGYKYLVAACF  290 (454)
Q Consensus       242 ~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~f  290 (454)
                                         ... ......++.+.+.+...|+.+.+-+|
T Consensus       288 -------------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (317)
T cd06635         288 -------------------VLI-DLIQRTKDAVRELDNLQYRKMKKLLF  316 (317)
T ss_pred             -------------------chh-hHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence                               011 11122333555667778888777766

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.89  E-value=1e-23  Score=208.96  Aligned_cols=154  Identities=19%  Similarity=0.247  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......                       ...
T Consensus       110 ~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~-----------------------~~~  166 (316)
T cd05108         110 YLLNWCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADE-----------------------KEY  166 (316)
T ss_pred             HHHHHHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCC-----------------------cce
Confidence            568899999999999999999999999999999999999999999998653210                       001


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   +..++.++  ||||+              |+++||+++ +..               |+
T Consensus       167 ~~~~~~~~~~y~apE~~~---~~~~~~~~--Di~sl--------------Gv~l~el~t~g~~---------------p~  212 (316)
T cd05108         167 HAEGGKVPIKWMALESIL---HRIYTHQS--DVWSY--------------GVTVWELMTFGSK---------------PY  212 (316)
T ss_pred             eccCCccceeecChHHhc---cCCCCchh--hhHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            112234467899999987   67788888  99999              999999654 332               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+.........+........+..             ......+++     .+||+.||.+|||+.+++.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         213 DGIPASEISSILEKGERLPQPPI-------------CTIDVYMIM-----VKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             CCCCHHHHHHHHhCCCCCCCCCC-------------CCHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            22222222222222222222221             124556677     99999999999999999986

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.89  E-value=9.3e-24  Score=211.65  Aligned_cols=155  Identities=21%  Similarity=0.317  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+..++.||+.||+|||++||+||||||+|||++.++.+||+|||++..+...                       ...
T Consensus       173 ~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nill~~~~~vkL~DfG~a~~~~~~-----------------------~~~  229 (337)
T cd05054         173 EDLISYSFQVARGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKD-----------------------PDY  229 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEeCCCcEEEeccccchhcccC-----------------------cch
Confidence            457889999999999999999999999999999999999999999999865321                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  ||||+              ||+++|+++ |..               |
T Consensus       230 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~Sl--------------Gv~l~el~t~g~~---------------p  275 (337)
T cd05054         230 VRKGDARLPLKWMAPESIF---DKVYTTQS--DVWSF--------------GVLLWEIFSLGAS---------------P  275 (337)
T ss_pred             hhccCCCCCccccCcHHhc---CCCCCccc--cHHHH--------------HHHHHHHHHcCCC---------------C
Confidence            1223345677899999988   67788888  99999              999999764 443               2


Q ss_pred             CCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.... .....+........+..             ..+...+++     .+||+.+|++|||+.|+++|
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~-----~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         276 YPGVQIDEEFCRRLKEGTRMRAPEY-------------ATPEIYSIM-----LDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             CCCCCccHHHHHHHhccCCCCCCcc-------------CCHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            2111110 11111111111111211             125566777     99999999999999988864

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.89  E-value=1.2e-23  Score=206.48  Aligned_cols=163  Identities=23%  Similarity=0.385  Sum_probs=117.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       116 ~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~-------------------------~~  170 (292)
T cd06657         116 EQIAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSK-------------------------EV  170 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceeccc-------------------------cc
Confidence            35788999999999999999999999999999999999999999998864421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||.+.   ...++.++  |+||+              |++++++++|.++               +
T Consensus       171 ~~~~~~~~~~~y~~pE~~~---~~~~~~~~--Dv~sl--------------Gvil~el~tg~~p---------------~  216 (292)
T cd06657         171 PRRKSLVGTPYWMAPELIS---RLPYGPEV--DIWSL--------------GIMVIEMVDGEPP---------------Y  216 (292)
T ss_pred             ccccccccCccccCHHHhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223457899999999987   55677788  99999              9999997765431               2


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...........+....+..++..           ...++...+++     .+||+.||.+|||+.+++.||||.....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~~P~~R~~~~~ll~~~~~~~~~~  278 (292)
T cd06657         217 FNEPPLKAMKMIRDNLPPKLKNL-----------HKVSPSLKGFL-----DRLLVRDPAQRATAAELLKHPFLAKAGP  278 (292)
T ss_pred             CCCCHHHHHHHHHhhCCcccCCc-----------ccCCHHHHHHH-----HHHHhCCcccCcCHHHHhcChHHhccCC
Confidence            11111111111111111111111           11225566777     9999999999999999999999997664

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>PHA02988 hypothetical protein; Provisional

Probab=99.89  E-value=1.5e-23  Score=204.89  Aligned_cols=151  Identities=15%  Similarity=0.175  Sum_probs=112.5

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ...++++.|++.||.|||+ .+++||||||+|||++.++.+||+|||++.....                          
T Consensus       122 ~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~--------------------------  175 (283)
T PHA02988        122 KTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSS--------------------------  175 (283)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhcc--------------------------
Confidence            3568899999999999998 4999999999999999999999999999875421                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                        .....+||..|+|||++.. ....|+.++  ||||+              ||++||+++|..               |
T Consensus       176 --~~~~~~~~~~y~aPE~~~~-~~~~~~~k~--Di~Sl--------------Gvil~el~~g~~---------------P  221 (283)
T PHA02988        176 --PPFKNVNFMVYFSYKMLND-IFSEYTIKD--DIYSL--------------GVVLWEIFTGKI---------------P  221 (283)
T ss_pred             --ccccccCcccccCHHHhhh-ccccccchh--hhhHH--------------HHHHHHHHHCCC---------------C
Confidence              1123578999999999862 125788888  99999              999999776543               3


Q ss_pred             CCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...+.......+. ......+|..             .++...+++     .+||+.||++|||++|++.
T Consensus       222 f~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~dp~~Rps~~ell~  274 (283)
T PHA02988        222 FENLTTKEIYDLIINKNNSLKLPLD-------------CPLEIKCIV-----EACTSHDSIKRPNIKEILY  274 (283)
T ss_pred             CCCCCHHHHHHHHHhcCCCCCCCCc-------------CcHHHHHHH-----HHHhcCCcccCcCHHHHHH
Confidence            33333333333332 1222233322             125677888     9999999999999998875

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.89  E-value=1.2e-23  Score=211.14  Aligned_cols=185  Identities=24%  Similarity=0.320  Sum_probs=115.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      +.++.++.||++||+|||++||+||||||+||+++. ++.+||+|||++.......                      ..
T Consensus       114 ~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~----------------------~~  171 (342)
T cd07854         114 EHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHY----------------------SH  171 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccceecCCcc----------------------cc
Confidence            467899999999999999999999999999999985 4578999999987542100                      01


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIR  155 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~  155 (454)
                      ........||..|+|||++..  ...++.++  ||||+              ||++|++++++...     .......+.
T Consensus       172 ~~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--DiwSl--------------Gvil~el~~g~~pf~~~~~~~~~~~~~~  233 (342)
T cd07854         172 KGYLSEGLVTKWYRSPRLLLS--PNNYTKAI--DMWAA--------------GCIFAEMLTGKPLFAGAHELEQMQLILE  233 (342)
T ss_pred             ccccccccccccccCHHHHhC--ccccCchh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            112233468999999998752  34577778  99999              99999977765421     122211111


Q ss_pred             hcCCCCCCc-hhhhhhhhhccCC--CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         156 RENGPSTGS-NVQKSLQKFQKSP--PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       156 ~~~~p~~~~-~~~~~~~~~~~~~--~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      .  .|.... ........+....  ....+..    .+.... ...+.+..+|+     .+||+.||.+|||++|++.||
T Consensus       234 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~li-----~~~L~~dP~~R~t~~ell~h~  301 (342)
T cd07854         234 S--VPVVREEDRNELLNVIPSFVRNDGGEPRR----PLRDLL-PGVNPEALDFL-----EQILTFNPMDRLTAEEALMHP  301 (342)
T ss_pred             h--cCCCChHHhhhhhhhhhhhhhhcccccCC----CHHHHc-cCCCHHHHHHH-----HHHhCCCchhccCHHHHhCCC
Confidence            1  111110 0000000000000  0000000    000000 11235566777     999999999999999999999


Q ss_pred             ccccCC
Q psy7309         233 ISLEGS  238 (454)
Q Consensus       233 ~f~~~~  238 (454)
                      ||....
T Consensus       302 ~~~~~~  307 (342)
T cd07854         302 YMSCYS  307 (342)
T ss_pred             cccccc
Confidence            998543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.89  E-value=8.3e-24  Score=215.04  Aligned_cols=154  Identities=23%  Similarity=0.352  Sum_probs=108.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +++++++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       212 ~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~-----------------------~~~  268 (374)
T cd05106         212 DDLLRFSSQVAQGMDFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMND-----------------------SNY  268 (374)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCC-----------------------cce
Confidence            467899999999999999999999999999999999999999999998754210                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|||||++.   ...|+.++  ||||+              ||++|||++ |..               |
T Consensus       269 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--DvwSl--------------Gvil~ellt~G~~---------------P  314 (374)
T cd05106         269 VVKGNARLPVKWMAPESIF---DCVYTVQS--DVWSY--------------GILLWEIFSLGKS---------------P  314 (374)
T ss_pred             eeccCCCCccceeCHHHhc---CCCCCccc--cHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1112234567899999987   56788888  99999              999999764 443               2


Q ss_pred             CCCchhhhh-hhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKS-LQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +........ ............|..             .+++..+++     .+||+.||++|||+.++++
T Consensus       315 f~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         315 YPGILVNSKFYKMVKRGYQMSRPDF-------------APPEIYSIM-----KMCWNLEPTERPTFSQISQ  367 (374)
T ss_pred             CccccccHHHHHHHHcccCccCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            211111111 111111111122221             236677888     9999999999999998865

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.89  E-value=1e-23  Score=204.18  Aligned_cols=151  Identities=19%  Similarity=0.288  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ++++.++.|++.||.|||+.|++||||||+||+++.++ .++|+|||++.....                          
T Consensus       109 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~l~dfg~~~~~~~--------------------------  162 (267)
T PHA03390        109 AEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRAKDRIYLCDYGLCKIIGT--------------------------  162 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCCCCeEEEecCccceecCC--------------------------
Confidence            46889999999999999999999999999999999998 999999998874321                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                         .....||..|+|||++.   +..++.++  |+||+              |+++|++++|..+               
T Consensus       163 ---~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~~l~~g~~p---------------  205 (267)
T PHA03390        163 ---PSCYDGTLDYFSPEKIK---GHNYDVSF--DWWAV--------------GVLTYELLTGKHP---------------  205 (267)
T ss_pred             ---CccCCCCCcccChhhhc---CCCCCchh--hHHHH--------------HHHHHHHHHCCCC---------------
Confidence               11246789999999997   56788888  99999              9999997766532               


Q ss_pred             CCCch-----hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-hhhhhcCccc
Q psy7309         161 STGSN-----VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-SEQNLCQPIS  234 (454)
Q Consensus       161 ~~~~~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-a~e~l~hp~f  234 (454)
                      +....     ........  ......+.             ..++.+.++|     .+||+.||.+||+ ++|+|+||||
T Consensus       206 ~~~~~~~~~~~~~~~~~~--~~~~~~~~-------------~~~~~~~~li-----~~~l~~~p~~R~~~~~~~l~h~~~  265 (267)
T PHA03390        206 FKEDEDEELDLESLLKRQ--QKKLPFIK-------------NVSKNANDFV-----QSMLKYNINYRLTNYNEIIKHPFL  265 (267)
T ss_pred             CCCCCcchhhHHHHHHhh--cccCCccc-------------ccCHHHHHHH-----HHHhccChhhCCchHHHHhcCCcc
Confidence            11110     01111111  11111111             1236777888     9999999999997 5999999999


Q ss_pred             c
Q psy7309         235 L  235 (454)
Q Consensus       235 ~  235 (454)
                      .
T Consensus       266 ~  266 (267)
T PHA03390        266 K  266 (267)
T ss_pred             c
Confidence            6

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.89  E-value=1.8e-23  Score=204.41  Aligned_cols=155  Identities=23%  Similarity=0.308  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       132 ~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~-----------------------~~~  188 (293)
T cd05053         132 KDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHI-----------------------DYY  188 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCCCeEEeCccccccccccc-----------------------cce
Confidence            356789999999999999999999999999999999999999999999854321                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  ||||+              ||++||+++ |..               |
T Consensus       189 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p  234 (293)
T cd05053         189 RKTTNGRLPVKWMAPEALF---DRVYTHQS--DVWSF--------------GVLLWEIFTLGGS---------------P  234 (293)
T ss_pred             eccCCCCCCccccCHHHhc---cCCcCccc--ceeeh--------------hhHHHHHhcCCCC---------------C
Confidence            1112234567899999987   66788888  99999              999999654 322               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             ......+++     .+||..||++|||+.|++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         235 YPGIPVEELFKLLKEGYRMEKPQN-------------CTQELYHLM-----RDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             CCCCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcccCcccCcCHHHHHHH
Confidence            333333333333322222222221             125566777     99999999999999988863

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.89  E-value=1.4e-23  Score=204.03  Aligned_cols=180  Identities=21%  Similarity=0.324  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++|++||||||+||+++.++.+||+|||++.....                         ..
T Consensus       100 ~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~-------------------------~~  154 (284)
T cd07836         100 NTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGI-------------------------PV  154 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcC-------------------------Cc
Confidence            46788999999999999999999999999999999999999999999975421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......+|..|++||++..  ...++.++  |+||+              |+++|++++|.+.     ..+.+...+..
T Consensus       155 ~~~~~~~~~~~y~~PE~~~~--~~~~~~~~--Dv~sl--------------G~~l~~l~~g~~~~~~~~~~~~~~~~~~~  216 (284)
T cd07836         155 NTFSNEVVTLWYRAPDVLLG--SRTYSTSI--DIWSV--------------GCIMAEMITGRPLFPGTNNEDQLLKIFRI  216 (284)
T ss_pred             cccccccccccccChHHhcC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Confidence            12234567899999999862  24567777  99999              9999997776542     11222222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...|... ...... ... .-...++.... ..+..+. ...++...+++     .+||+.||.+|||+.|+++||||
T Consensus       217 ~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~i-----~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         217 MGTPTES-TWPGIS-QLP-EYKPTFPRYPP-QDLQQLF-PHADPLGIDLL-----HRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             hCCCChh-hHHHHh-cCc-hhcccccCCCh-HHHHHHh-hhcCcHHHHHH-----HHHhcCCcccCCCHHHHhcCCCC
Confidence            2222111 111100 000 00001111000 0011111 11236667787     99999999999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.89  E-value=7e-24  Score=208.22  Aligned_cols=160  Identities=18%  Similarity=0.230  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+|+.+......                  ......
T Consensus       127 ~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~~------------------~~~~~~  188 (294)
T PHA02882        127 LIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGKH------------------IEYSKE  188 (294)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCcc------------------cccccc
Confidence            46789999999999999999999999999999999999999999999865321000                  000112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHH-----HHHHHhhhc
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLE-----ELKHNIRRE  157 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~-----~l~~~i~~~  157 (454)
                      ......||+.|+|||++.   +..|+.++  ||||+              ||+++||++|.++...     .+....   
T Consensus       189 ~~~~~~gt~~y~ape~~~---~~~~~~~~--DiwSl--------------G~~l~el~~g~~P~~~~~~~~~~~~~~---  246 (294)
T PHA02882        189 QKDLHRGTLYYAGLDAHN---GACVTRRG--DLESL--------------GYCMLKWAGIKLPWKGFGHNGNLIHAA---  246 (294)
T ss_pred             cccccCCCccccCHHHhC---CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCccccchHHHHHh---
Confidence            233457999999999988   67788888  99999              9999997765542110     000000   


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                              ......++.. ....++.              ......+++     ..|+..+|.+||+++++++
T Consensus       247 --------~~~~~~~~~~-~~~~~~~--------------~~~~~~~~~-----~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        247 --------KCDFIKRLHE-GKIKIKN--------------ANKFIYDFI-----ECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             --------HHHHHHHhhh-hhhccCC--------------CCHHHHHHH-----HHHHhCCCCCCCCHHHHHH
Confidence                    0011111211 1111111              114556677     9999999999999998764

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=1.6e-23  Score=201.15  Aligned_cols=157  Identities=29%  Similarity=0.399  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.|++.||.|||+.|++|+||||+||+++.++.+||+|||++.....                           
T Consensus        97 ~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~---------------------------  149 (260)
T cd05611          97 DWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE---------------------------  149 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc---------------------------
Confidence            46889999999999999999999999999999999999999999998864310                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                        .....|+..|+|||.+.   +..++.++  |+||+              |++++++++|.+               |+
T Consensus       150 --~~~~~~~~~y~~pe~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~---------------p~  193 (260)
T cd05611         150 --NKKFVGTPDYLAPETIL---GVGDDKMS--DWWSL--------------GCVIFEFLFGYP---------------PF  193 (260)
T ss_pred             --cccCCCCcCccChhhhc---CCCCcchh--hhHHH--------------HHHHHHHHHCCC---------------CC
Confidence              22346888999999987   44577788  99999              999999776553               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh---hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS---EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta---~e~l~hp~f~~  236 (454)
                      ...........+... ...++....         ...++...+++     .+||+.||++|||+   +|++.||||..
T Consensus       194 ~~~~~~~~~~~~~~~-~~~~~~~~~---------~~~~~~~~~~i-----~~~l~~~p~~R~~~~~~~~~l~~~~~~~  256 (260)
T cd05611         194 HAETPDAVFDNILSR-RINWPEEVK---------EFCSPEAVDLI-----NRLLCMDPAKRLGANGYQEIKSHPFFKS  256 (260)
T ss_pred             CCCCHHHHHHHHHhc-ccCCCCccc---------ccCCHHHHHHH-----HHHccCCHHHccCCCcHHHHHcChHhhc
Confidence            222222222222211 111111110         11236677888     99999999999966   79999999975

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.89  E-value=1.6e-23  Score=201.79  Aligned_cols=152  Identities=22%  Similarity=0.270  Sum_probs=110.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++|++||||||+||+++.++.+||+|||++......                        ...
T Consensus       105 ~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~------------------------~~~  160 (263)
T cd05052         105 VLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGD------------------------TYT  160 (263)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccc------------------------eee
Confidence            46788999999999999999999999999999999999999999998754310                        001


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||.+.   +..++.++  ||||+              ||++|||++ |..               |+
T Consensus       161 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~el~t~g~~---------------p~  206 (263)
T cd05052         161 AHAGAKFPIKWTAPESLA---YNKFSIKS--DVWAF--------------GVLLWEIATYGMS---------------PY  206 (263)
T ss_pred             ccCCCCCccccCCHHHhc---cCCCCchh--HHHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            111233466899999987   56778888  99999              999999875 432               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.........+........+..             .++...+++     .+||+.||++|||+.|+++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rp~~~~l~~  257 (263)
T cd05052         207 PGIDLSQVYELLEKGYRMERPEG-------------CPPKVYELM-----RACWQWNPSDRPSFAEIHQ  257 (263)
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCC-------------CCHHHHHHH-----HHHccCCcccCCCHHHHHH
Confidence            33333333333332222222322             226677888     9999999999999998865

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.89  E-value=1.5e-23  Score=203.17  Aligned_cols=180  Identities=25%  Similarity=0.345  Sum_probs=117.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.|++.||+|||++||+|+||||+||+++.++.+||+|||++.....                         ..
T Consensus        98 ~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~-------------------------~~  152 (282)
T cd07829          98 NLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGI-------------------------PL  152 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCC-------------------------Cc
Confidence            46789999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......++..|+|||.+..  ...++.++  |+||+              |++++|++++++.     ....+......
T Consensus       153 ~~~~~~~~~~~~~aPE~~~~--~~~~~~~~--Dv~sl--------------G~~l~~l~~~~~~~~~~~~~~~~~~~~~~  214 (282)
T cd07829         153 RTYTHEVVTLWYRAPEILLG--SKHYSTAV--DIWSV--------------GCIFAEMITGKPLFPGDSEIDQLFKIFQI  214 (282)
T ss_pred             cccCccccCcCcCChHHhcC--CcCCCccc--cHHHH--------------HHHHHHHHhCCCCCCCccHHHHHHHHHHH
Confidence            12334566788999999872  23677788  99999              9999997776542     12222222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...|... .+... ..+. .....++.... ..+....+.. +..+.+++     ++||..||++||++++++.||||
T Consensus       215 ~~~~~~~-~~~~~-~~~~-~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~i-----~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         215 LGTPTEE-SWPGV-TKLP-DYKPTFPKFPP-KDLEKVLPRL-DPEGIDLL-----SKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             hCCCcHH-HHHhh-cccc-cccccccccCc-cchHHhcccc-cHHHHHHH-----HHhhccCcccCCCHHHHhhCcCC
Confidence            2222111 11100 0000 00111111110 0010111111 35566777     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.89  E-value=2.5e-23  Score=201.50  Aligned_cols=153  Identities=20%  Similarity=0.292  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||.|||+.||+||||||+|||++.++.+||+|||+++.....                       ....
T Consensus       120 ~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~-----------------------~~~~  176 (277)
T cd05032         120 KFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYET-----------------------DYYR  176 (277)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCcccchhhccC-----------------------cccc
Confidence            57889999999999999999999999999999999999999999999865321                       0111


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+|..|+|||.+.   ...++.++  ||||+              ||++||+++ +.+               |+
T Consensus       177 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~t~g~~---------------p~  222 (277)
T cd05032         177 KGGKGLLPVRWMAPESLK---DGVFTTKS--DVWSF--------------GVVLWEMATLAEQ---------------PY  222 (277)
T ss_pred             cCCCCCccccccCHHHHh---cCCCCccc--chHHH--------------HHHHHHhhccCCC---------------CC
Confidence            223346788999999987   56678888  99999              999999765 432               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.........+........|...             +....+++     .+||+.+|++|||+.+++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~li-----~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         223 QGLSNEEVLKFVIDGGHLDLPENC-------------PDKLLELM-----RMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             ccCCHHHHHHHHhcCCCCCCCCCC-------------CHHHHHHH-----HHHcCCChhhCCCHHHHHH
Confidence            222222333333323333333321             25666788     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.89  E-value=2e-23  Score=206.21  Aligned_cols=173  Identities=21%  Similarity=0.341  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.++.|++.||.|||+ +|++||||||+|||++.++.+||+|||++.....                           
T Consensus       100 ~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~---------------------------  152 (308)
T cd06615         100 ILGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLID---------------------------  152 (308)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccccc---------------------------
Confidence            577899999999999997 6999999999999999999999999999864321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh----HHHHHHHhhhc
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT----LEELKHNIRRE  157 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~----~~~l~~~i~~~  157 (454)
                      ......+|++.|+|||++.   +..++.++  |+||+              |++++++++|+.+.    ...+...+...
T Consensus       153 ~~~~~~~~~~~~~aPE~~~---~~~~~~~~--Diwsl--------------G~~l~~l~~g~~p~~~~~~~~~~~~~~~~  213 (308)
T cd06615         153 SMANSFVGTRSYMSPERLQ---GTHYTVQS--DIWSL--------------GLSLVEMAIGRYPIPPPDAKELEAMFGRP  213 (308)
T ss_pred             cccccCCCCcCccChhHhc---CCCCCccc--hHHHH--------------HHHHHHHHhCCCCCCCcchhhHHHhhcCc
Confidence            1123457899999999986   56678788  99999              99999977765421    11111111100


Q ss_pred             CCCCCCc-----------------hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCC
Q psy7309         158 NGPSTGS-----------------NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPS  220 (454)
Q Consensus       158 ~~p~~~~-----------------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~  220 (454)
                      .......                 ..............+..|..            ..+....+++     .+||..||+
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~li-----~~~l~~~P~  276 (308)
T cd06615         214 VSEGEAKESHRPVSGHPPDSPRPMAIFELLDYIVNEPPPKLPSG------------AFSDEFQDFV-----DKCLKKNPK  276 (308)
T ss_pred             cccccccCCcccccCCCCCccchhhHHHHHHHHhcCCCccCcCc------------ccCHHHHHHH-----HHHccCChh
Confidence            0000000                 00011111111111111111            1235567777     999999999


Q ss_pred             CCCChhhhhcCcccccCC
Q psy7309         221 KRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       221 ~Rpta~e~l~hp~f~~~~  238 (454)
                      +|||++|+++||||....
T Consensus       277 ~Rpt~~~ll~~~~~~~~~  294 (308)
T cd06615         277 ERADLKELTKHPFIKRAE  294 (308)
T ss_pred             hCcCHHHHhcChhhhhcc
Confidence            999999999999998643

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.89  E-value=1.8e-23  Score=205.28  Aligned_cols=151  Identities=21%  Similarity=0.234  Sum_probs=109.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                          ..
T Consensus       120 ~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~--------------------------~~  173 (297)
T cd05089         120 QLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEV--------------------------YV  173 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEECCcCCCccccc--------------------------ee
Confidence            5788999999999999999999999999999999999999999999863211                          00


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   ...++.++  ||||+              ||++|||++ |..               |+
T Consensus       174 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--DvwSl--------------G~il~el~t~g~~---------------pf  219 (297)
T cd05089         174 KKTMGRLPVRWMAIESLN---YSVYTTKS--DVWSF--------------GVLLWEIVSLGGT---------------PY  219 (297)
T ss_pred             ccCCCCcCccccCchhhc---cCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            111123355799999987   56788888  99999              999999764 432               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      ...........+........+..             .+....+++     .+||+.||.+|||++++++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         220 CGMTCAELYEKLPQGYRMEKPRN-------------CDDEVYELM-----RQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             CCCCHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            33333333333332222222222             225566777     99999999999999988653

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.89  E-value=9e-24  Score=204.85  Aligned_cols=181  Identities=29%  Similarity=0.356  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+|+||||+||+++.++.+||+|||.+.....                         ..
T Consensus        98 ~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~-------------------------~~  152 (283)
T cd05118          98 SLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGS-------------------------PV  152 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCC-------------------------Cc
Confidence            46788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......++..|+|||.+..  ...++.++  |+||+              |+++|++++|++.     ..+.+......
T Consensus       153 ~~~~~~~~~~~~~~PE~~~~--~~~~~~~~--Di~sl--------------G~~l~~l~tg~~~~~~~~~~~~~~~~~~~  214 (283)
T cd05118         153 RPYTHYVVTRWYRAPELLLG--DKGYSTPV--DIWSV--------------GCIFAELLSRRPLFPGKSEIDQLFKIFRT  214 (283)
T ss_pred             ccccCccCcccccCcHHHhc--CCCCCchh--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            12334568889999999872  23677888  99999              9999997776541     22222222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .+.|... .+..... ........++.... ...+... ...+....++|     .+||+.||.+||++++++.||||
T Consensus       215 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~i-----~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         215 LGTPDPE-VWPKFTS-LARNYKFSFPKKAG-MPLPKLF-PNASPQALDLL-----SQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             cCCCchH-hcccchh-hhhhhhhhhccccc-cCHHHhh-hhhCHHHHHHH-----HHHhccCcccCcCHHHHhhCCCC
Confidence            2222111 1110000 00011111111100 0001111 11236677777     99999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.89  E-value=1.7e-23  Score=204.55  Aligned_cols=159  Identities=20%  Similarity=0.294  Sum_probs=115.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.|++.||.|||++||+||||||+||+++.++.+||+|||+++.....                       ....
T Consensus       120 ~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~-----------------------~~~~  176 (288)
T cd05061         120 EMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYET-----------------------DYYR  176 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcCCcccccccc-----------------------cccc
Confidence            56789999999999999999999999999999999999999999998754210                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||.+.   +..++.++  |+||+              ||++||+++ +.+               |+
T Consensus       177 ~~~~~~~~~~y~~pE~~~---~~~~~~~~--Dvwsl--------------G~~l~el~~~~~~---------------p~  222 (288)
T cd05061         177 KGGKGLLPVRWMAPESLK---DGVFTTSS--DMWSF--------------GVVLWEITSLAEQ---------------PY  222 (288)
T ss_pred             ccCCCcccccccCHHHhc---cCCCChHh--HHHHH--------------HHHHHHHHhCCCC---------------CC
Confidence            122235577899999987   56778888  99999              999999654 222               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc------Ccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC------QPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~------hp~f~  235 (454)
                      .+....+....+........+..             ..+...+++     .+||+.||++|||+.++++      ||||.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~  284 (288)
T cd05061         223 QGLSNEQVLKFVMDGGYLDQPDN-------------CPERVTDLM-----RMCWQFNPKMRPTFLEIVNLLKDDLHPSFP  284 (288)
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCChhHCcCHHHHHHHHHhhcCCCCC
Confidence            22222333333322222222222             125677888     9999999999999999986      88887


Q ss_pred             c
Q psy7309         236 E  236 (454)
Q Consensus       236 ~  236 (454)
                      .
T Consensus       285 ~  285 (288)
T cd05061         285 E  285 (288)
T ss_pred             C
Confidence            4

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.89  E-value=1.2e-23  Score=204.25  Aligned_cols=154  Identities=19%  Similarity=0.327  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.|++.||.|||+.|++||||||+||+++.++.+||+|||++......                       ....
T Consensus       120 ~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~-----------------------~~~~  176 (277)
T cd05062         120 KMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET-----------------------DYYR  176 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCCCCccccCCc-----------------------ceee
Confidence            46788999999999999999999999999999999999999999998754210                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+++.|+|||++.   +..++.++  ||||+              ||++||+++ +..               |+
T Consensus       177 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~~~~---------------p~  222 (277)
T cd05062         177 KGGKGLLPVRWMSPESLK---DGVFTTYS--DVWSF--------------GVVLWEIATLAEQ---------------PY  222 (277)
T ss_pred             cCCCCccCHhhcChhHhh---cCCcCchh--HHHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            112245678899999987   56788888  99999              999999765 222               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+.........+........+..             ..+...+++     .+||+.||++|||+.|++++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         223 QGMSNEQVLRFVMEGGLLDKPDN-------------CPDMLFELM-----RMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             CCCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            33333333333332222222222             124566777     99999999999999988753

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.89  E-value=1.2e-23  Score=204.31  Aligned_cols=159  Identities=28%  Similarity=0.461  Sum_probs=116.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.|++.||+|||+.|++|+||||+||+++.++.++|+|||++.....                         ...
T Consensus       102 ~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~-------------------------~~~  156 (277)
T cd06640         102 QIATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTD-------------------------TQI  156 (277)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccC-------------------------Ccc
Confidence            5678999999999999999999999999999999999999999999875421                         111


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......++..|+|||++.   +..++.++  |+||+              |+++||+++|.++               +.
T Consensus       157 ~~~~~~~~~~y~apE~~~---~~~~~~~~--Dv~sl--------------G~il~el~tg~~p---------------~~  202 (277)
T cd06640         157 KRNTFVGTPFWMAPEVIQ---QSAYDSKA--DIWSL--------------GITAIELAKGEPP---------------NS  202 (277)
T ss_pred             ccccccCcccccCHhHhc---cCCCccHH--HHHHH--------------HHHHHHHHHCCCC---------------CC
Confidence            223356888999999987   55678888  99999              9999998776542               22


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ................+.++..             ......+++     .+||+.||++|||+.++++||||....
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~il~~~~~~~~~  260 (277)
T cd06640         203 DMHPMRVLFLIPKNNPPTLTGE-------------FSKPFKEFI-----DACLNKDPSFRPTAKELLKHKFIVKNA  260 (277)
T ss_pred             CcChHhHhhhhhcCCCCCCchh-------------hhHHHHHHH-----HHHcccCcccCcCHHHHHhChHhhhcc
Confidence            2211111111111112111111             124566777     999999999999999999999998543

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.89  E-value=8.7e-24  Score=208.18  Aligned_cols=98  Identities=19%  Similarity=0.235  Sum_probs=79.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       138 ~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~-----------------------~~~  194 (304)
T cd05096         138 SSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAG-----------------------DYY  194 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCcchhheEEcCCccEEECCCccceecccC-----------------------cee
Confidence            357899999999999999999999999999999999999999999998754210                       000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK  141 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~  141 (454)
                      .......+|..|+|||++.   ...++.++  ||||+              |+++||++.
T Consensus       195 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~~l~el~~  235 (304)
T cd05096         195 RIQGRAVLPIRWMAWECIL---MGKFTTAS--DVWAF--------------GVTLWEILM  235 (304)
T ss_pred             EecCcCCCCccccCHHHHh---cCCCCchh--hhHHH--------------HHHHHHHHH
Confidence            1122345678899999987   56788888  99999              999999653

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.88  E-value=1.3e-23  Score=206.25  Aligned_cols=162  Identities=26%  Similarity=0.424  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||.|||++|++||||||+||+++.++.+||+|||++.....                         ..
T Consensus       115 ~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~-------------------------~~  169 (293)
T cd06647         115 GQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP-------------------------EQ  169 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceecccc-------------------------cc
Confidence            35788999999999999999999999999999999999999999998874421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||.+.   ...++.++  |+||+              |+++|++++|..               |+
T Consensus       170 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Dv~sl--------------G~ll~~ll~g~~---------------pf  215 (293)
T cd06647         170 SKRSTMVGTPYWMAPEVVT---RKAYGPKV--DIWSL--------------GIMAIEMVEGEP---------------PY  215 (293)
T ss_pred             cccccccCChhhcCchhhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1223457899999999987   56677778  99999              999999777654               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ...+.......+.....+.++..           ........+++     .+||+.||.+||++++++.||||....
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~~p~~Rp~~~~il~h~~~~~~~  276 (293)
T cd06647         216 LNENPLRALYLIATNGTPELQNP-----------EKLSAIFRDFL-----NRCLEMDVEKRGSAKELLQHPFLKIAK  276 (293)
T ss_pred             CCCChhhheeehhcCCCCCCCCc-----------cccCHHHHHHH-----HHHccCChhhCcCHHHHhcCHHHhcCc
Confidence            22111111111111111111110           11224566777     999999999999999999999998655

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.88  E-value=4e-23  Score=204.14  Aligned_cols=159  Identities=26%  Similarity=0.360  Sum_probs=114.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++||||||+||+++.++.+||+|||++....                            
T Consensus       115 ~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~----------------------------  166 (308)
T cd06634         115 VEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA----------------------------  166 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeec----------------------------
Confidence            3578899999999999999999999999999999999999999999886432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       ......||+.|+|||.+.......++.++  ||||+              ||++|++++|..+.               
T Consensus       167 -~~~~~~~~~~y~aPE~~~~~~~~~~~~~~--Di~sl--------------G~il~el~~g~~p~---------------  214 (308)
T cd06634         167 -PANXFVGTPYWMAPEVILAMDEGQYDGKV--DVWSL--------------GITCIELAERKPPL---------------  214 (308)
T ss_pred             -CcccccCCccccCHHHHhhcccCCCCccc--chHHH--------------HHHHHHHHcCCCCC---------------
Confidence             11234688899999997522234567777  99999              99999987765421               


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      ...........+.....+..+..            ..+....++|     ++||+.+|.+|||++++++|||+...
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~li-----~~cl~~~P~~Rp~~~~ll~~~~~~~~  273 (308)
T cd06634         215 FNMNAMSALYHIAQNESPALQSG------------HWSEYFRNFV-----DSCLQKIPQDRPTSEVLLKHRFVLRE  273 (308)
T ss_pred             ccccHHHHHHHHhhcCCCCcCcc------------cccHHHHHHH-----HHHhhCCcccCCCHHHHhhCcccccc
Confidence            11111111111111111111111            1125566777     99999999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.88  E-value=1.9e-23  Score=201.65  Aligned_cols=159  Identities=26%  Similarity=0.357  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+..++.||+.||+|||++||+||||||+||+++. ++.+||+|||++.....                         ..
T Consensus       109 ~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~-------------------------~~  163 (268)
T cd06624         109 TIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAG-------------------------IN  163 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheeccc-------------------------CC
Confidence            46778999999999999999999999999999976 67899999999874421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||++... ...++.++  |+||+              |++++++++++++....            
T Consensus       164 ~~~~~~~~~~~~~aPE~~~~~-~~~~~~~~--Dv~sl--------------Gvvl~~l~~g~~p~~~~------------  214 (268)
T cd06624         164 PCTETFTGTLQYMAPEVIDKG-PRGYGAPA--DIWSL--------------GCTIVEMATGKPPFIEL------------  214 (268)
T ss_pred             CccccCCCCccccChhhhccc-cccCCchh--hhHHH--------------HHHHHHHHhCCCCCccc------------
Confidence            122234678999999998621 23466777  99999              99999977765422100            


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                       ..................+|..             ..+...+++     .+||+.+|.+|||+.|++.||||
T Consensus       215 -~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         215 -GEPQAAMFKVGMFKIHPEIPES-------------LSAEAKNFI-----LRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             -cChhhhHhhhhhhccCCCCCcc-------------cCHHHHHHH-----HHHcCCCchhCCCHHHHHhCCCC
Confidence             0000000000000111122222             225667788     99999999999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.88  E-value=4.1e-23  Score=202.57  Aligned_cols=161  Identities=25%  Similarity=0.349  Sum_probs=113.8

Q ss_pred             hHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+.+++.|++.||+|||+ +||+||||||+||+++.++.+||+|||++..+..                          .
T Consensus       115 ~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~--------------------------~  168 (296)
T cd06618         115 ILGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVD--------------------------S  168 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccC--------------------------C
Confidence            467899999999999997 6999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccc-cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGV-KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~-~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.... ...++.++  |+||+              |+++|++++|+.+.              
T Consensus       169 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~--Di~sl--------------G~il~el~~g~~p~--------------  218 (296)
T cd06618         169 KAKTRSAGCAAYMAPERIDPPDPNPKYDIRA--DVWSL--------------GISLVELATGQFPY--------------  218 (296)
T ss_pred             CcccCCCCCccccCHhhcCCCCCccccccch--hHHHH--------------HHHHHHHHhCCCCC--------------
Confidence            1122345788999999986221 23477778  99999              99999977765421              


Q ss_pred             CCCc-hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         161 STGS-NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       161 ~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       ... ...+.+.+.........+..           ........+++     .+||..||.+|||+++++.||||..
T Consensus       219 -~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~~p~~Rp~~~~il~~~~~~~  278 (296)
T cd06618         219 -KNCKTEFEVLTKILQEEPPSLPPN-----------EGFSPDFCSFV-----DLCLTKDHRKRPKYRELLQHPFIRR  278 (296)
T ss_pred             -CcchhHHHHHHHHhcCCCCCCCCC-----------CCCCHHHHHHH-----HHHccCChhhCCCHHHHhcChhhhc
Confidence             110 00111112211221111111           01225567777     9999999999999999999999984

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.88  E-value=6e-23  Score=222.42  Aligned_cols=155  Identities=10%  Similarity=0.078  Sum_probs=137.4

Q ss_pred             HhCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCe
Q psy7309         289 CFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSI  362 (454)
Q Consensus       289 ~f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~  362 (454)
                      .|.+..+++.+++       |..+.++++|++.++++|.++||.+|.||+||+.+++..+      .++||.|.|.+|+.
T Consensus       254 ~~~~~~~G~~~~l-------p~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~  326 (638)
T PRK00413        254 HFQEEAPGLPFWH-------PKGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEE  326 (638)
T ss_pred             EecCCCCcceEEc-------ccHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcE
Confidence            4677777788777       7888899999999999999999999999999999998642      36799999999999


Q ss_pred             EeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCCCC--C--ccceEEEEEEEEEcCCCCcc-cH-HHHHHHHH
Q psy7309         363 VTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRVLG--F--HPRELYECAFDIVTNTPGVL-TM-GSLRRCLM  433 (454)
Q Consensus       363 ~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~~~--g--~~rE~~Q~g~eiig~~~~~~-~d-~e~~~~~~  433 (454)
                      ++|||+.|.++||+++.+..   ..|+|+||+|+|||+++++.  |  |.|||+|+|+|++|.+ +.. +| +|++.++.
T Consensus       327 ~~LRP~~~~~~~r~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~g~~-~~~~~e~~eii~l~~  405 (638)
T PRK00413        327 YALKPMNCPGHVQIYKQGLRSYRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIFCTP-EQIEEEVKKVIDLIL  405 (638)
T ss_pred             EEEecCCcHHHHHHHhCcCCChhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEEcCH-HHHHHHHHHHHHHHH
Confidence            99999999999999986532   46999999999999998862  4  9999999999999987 444 46 99999999


Q ss_pred             HHHHhCCCCCcEEEcCcc
Q psy7309         434 GSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       434 ~~l~~~~~~~~~i~i~~~  451 (454)
                      ++|+.+|++++.+++|+|
T Consensus       406 ~~~~~lg~~~~~i~l~~r  423 (638)
T PRK00413        406 DVYKDFGFEDYEVKLSTR  423 (638)
T ss_pred             HHHHHcCCceEEEEEecC
Confidence            999999999999999997

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.88  E-value=2.2e-23  Score=203.10  Aligned_cols=169  Identities=21%  Similarity=0.290  Sum_probs=112.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++..+....                      ...
T Consensus       109 ~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~----------------------~~~  166 (284)
T cd05079         109 KQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK----------------------EYY  166 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccCc----------------------cce
Confidence            4678999999999999999999999999999999999999999999988543210                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||++.   +..++.++  ||||+              |++++|+++++............ ..+|.
T Consensus       167 ~~~~~~~~~~~y~apE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~~~~~~~~~~~~~~-~~~~~  226 (284)
T cd05079         167 TVKDDLDSPVFWYAPECLI---QSKFYIAS--DVWSF--------------GVTLYELLTYCDSESSPMTLFLK-MIGPT  226 (284)
T ss_pred             eecCCCCCCccccCHHHhc---cCCCCccc--cchhh--------------hhhhhhhhcCCCCCccccchhhh-hcccc
Confidence            1122345778899999987   56688888  99999              99999987644321111111111 11222


Q ss_pred             CCc-hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGS-NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+. ........+........+.             ..+....+|+     .+||+.||.+|||+.++++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~li-----~~~l~~~p~~Rpt~~~il~  278 (284)
T cd05079         227 HGQMTVTRLVRVLEEGKRLPRPP-------------NCPEEVYQLM-----RKCWEFQPSKRTTFQNLIE  278 (284)
T ss_pred             cccccHHHHHHHHHcCccCCCCC-------------CCCHHHHHHH-----HHHccCCcccCcCHHHHHH
Confidence            211 1112222222111111111             1235667777     9999999999999998876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.88  E-value=2e-23  Score=201.38  Aligned_cols=153  Identities=18%  Similarity=0.208  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||.|||++||+||||||+||+++.++.+||+|||+++.....                       ....
T Consensus       114 ~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~-----------------------~~~~  170 (273)
T cd05035         114 TLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSG-----------------------DYYR  170 (273)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccceeecccc-----------------------cccc
Confidence            57889999999999999999999999999999999999999999998754311                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   ...++.++  ||||+              ||++||+++ +.+               |+
T Consensus       171 ~~~~~~~~~~~~~pe~~~---~~~~~~~~--Dv~Sl--------------G~il~el~~~g~~---------------p~  216 (273)
T cd05035         171 QGRIAKMPVKWIAIESLA---DRVYTSKS--DVWAF--------------GVTMWEIATRGQT---------------PY  216 (273)
T ss_pred             ccccccCCccccCHhhcc---cCCCCccc--chHHH--------------HHHHHHHHhCCCC---------------CC
Confidence            111233467899999987   66788888  99999              999999765 332               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+....+....+........+..             .+....+++     .+||+.||++|||+.|+++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~e~~~  267 (273)
T cd05035         217 PGVENHEIYDYLRHGNRLKQPED-------------CLDELYDLM-----YSCWRADPKDRPTFTKLRE  267 (273)
T ss_pred             CCCCHHHHHHHHHcCCCCCCCcC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            23223333333333333222322             225667777     9999999999999998876

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.88  E-value=4.7e-23  Score=200.16  Aligned_cols=180  Identities=29%  Similarity=0.423  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.....                          .
T Consensus        99 ~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~--------------------------~  152 (283)
T cd07830          99 SVIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRS--------------------------R  152 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccC--------------------------C
Confidence            46788999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......|+..|+|||++..  ...++.++  |+||+              |++++|++++.+.     ..+.+......
T Consensus       153 ~~~~~~~~~~~~~aPE~~~~--~~~~~~~~--Di~s~--------------G~~l~el~~g~~~~~~~~~~~~~~~~~~~  214 (283)
T cd07830         153 PPYTDYVSTRWYRAPEILLR--STSYSSPV--DIWAL--------------GCIMAELYTLRPLFPGSSEIDQLYKICSV  214 (283)
T ss_pred             CCcCCCCCcccccCceeeec--CcCcCCcc--chhhH--------------HHHHHHHHhCCCccCCCChHHHHHHHHHh
Confidence            12234578899999999862  34567777  99999              9999998776542     12233222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...|... .+....... ......++...+ ......... ..+...+++     ++||+.||.+|||++|++.||||
T Consensus       215 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~li-----~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         215 LGTPTKQ-DWPEGYKLA-SKLGFRFPQFAP-TSLHQLIPN-ASPEAIDLI-----KDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             cCCCChh-hhhhHhhhh-cccccccccccc-ccHHHHccc-CCHHHHHHH-----HHhcccCcccCCCHHHHhhCCCC
Confidence            2222221 111111100 011111111110 000000111 135566677     99999999999999999999997

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.88  E-value=2.2e-23  Score=199.23  Aligned_cols=155  Identities=25%  Similarity=0.380  Sum_probs=113.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.||+|+||||+||+++.++.+||+|||++.....                          .
T Consensus       102 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~--------------------------~  155 (258)
T cd06632         102 PVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVE--------------------------F  155 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccc--------------------------c
Confidence            35778999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccc-cccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKA-MYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~-~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......|+..|+|||.+.   .. .++.++  |+||+              |+++|++++|+++               
T Consensus       156 ~~~~~~~~~~~y~~pe~~~---~~~~~~~~~--D~~sl--------------G~~l~~l~~g~~p---------------  201 (258)
T cd06632         156 SFAKSFKGSPYWMAPEVIA---QQGGYGLAA--DIWSL--------------GCTVLEMATGKPP---------------  201 (258)
T ss_pred             ccccccCCCcceeCHHHhc---CCCCCCchh--hhHHH--------------HHHHHHHHhCCCC---------------
Confidence            1233457899999999987   33 377788  99999              9999998776542               


Q ss_pred             CCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         161 STGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      +.............. .....++..             .++...+++     ++||+.||.+|||+.+++.|||+
T Consensus       202 f~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         202 WSQLEGVAAVFKIGRSKELPPIPDH-------------LSDEAKDFI-----LKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             cccCcHHHHHHHHHhcccCCCcCCC-------------cCHHHHHHH-----HHHhhcCcccCcCHHHHhcCCCC
Confidence            111111111111111 111112211             236667788     99999999999999999999996

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.88  E-value=2.3e-23  Score=202.05  Aligned_cols=154  Identities=18%  Similarity=0.249  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+||+++.++.+||+|||++......                       ...
T Consensus       122 ~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~-----------------------~~~  178 (280)
T cd05049         122 SQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTT-----------------------DYY  178 (280)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEECCcccceecccC-----------------------cce
Confidence            357889999999999999999999999999999999999999999998754210                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+++.|+|||++.   +..++.++  ||||+              |+++|||++ |..               |
T Consensus       179 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~e~~~~g~~---------------p  224 (280)
T cd05049         179 RVGGHTMLPIRWMPPESIM---YRKFTTES--DVWSF--------------GVVLWEIFTYGKQ---------------P  224 (280)
T ss_pred             ecCCCCcccceecChhhhc---cCCcchhh--hHHHH--------------HHHHHHHHhcCCC---------------C
Confidence            1123345678899999987   67788888  99999              999999765 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.||++|||+.|++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         225 WYGLSNEEVIECITQGRLLQRPRT-------------CPSEVYDIM-----LGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             CCCCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcCCCcccCCCHHHHHH
Confidence            222222222222222222222221             125667888     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.88  E-value=4.1e-23  Score=198.21  Aligned_cols=165  Identities=26%  Similarity=0.391  Sum_probs=116.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||.|||+.||+|+||||+||+++.++.+||+|||++........                     ...
T Consensus        99 ~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~---------------------~~~  157 (264)
T cd06626          99 HVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTT---------------------TMG  157 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCC---------------------ccc
Confidence            46788999999999999999999999999999999999999999999886532100                     001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......++..|+|||++.......++.++  ||||+              |++++++++|+.+               +
T Consensus       158 ~~~~~~~~~~~~~~PE~~~~~~~~~~~~~~--Dv~s~--------------G~il~~l~~g~~p---------------f  206 (264)
T cd06626         158 EEVQSLAGTPAYMAPEVITGGKGKGHGRAA--DIWSL--------------GCVVLEMATGKRP---------------W  206 (264)
T ss_pred             ccccCCcCCcCccChhhccCCCCCCCCccc--chHHH--------------HHHHHHHHhCCCC---------------c
Confidence            112235678999999998732223367777  99999              9999997765542               2


Q ss_pred             CCc-hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGS-NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ... ................+|...           ..++...+++     ++||+.||.+|||+.|++.|||+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~li-----~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         207 SELDNEFQIMFHVGAGHKPPIPDSL-----------QLSPEGKDFL-----DRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             cCCcchHHHHHHHhcCCCCCCCccc-----------ccCHHHHHHH-----HHHccCCcccCCCHHHHhcCCCC
Confidence            111 111111111112222333321           1235667788     99999999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.88  E-value=2.4e-23  Score=203.81  Aligned_cols=181  Identities=27%  Similarity=0.355  Sum_probs=116.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.++.||+.||+|||++|++||||||+||+++. ++.+||+|||++.....                         ..
T Consensus       103 ~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~-------------------------~~  157 (294)
T PLN00009        103 LIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGI-------------------------PV  157 (294)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCC-------------------------Cc
Confidence            46789999999999999999999999999999985 45799999999975421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ...+...|++.|+|||++..  ...++.++  |+||+              |++++++++|.+.     ..+.+...+..
T Consensus       158 ~~~~~~~~~~~y~~PE~~~~--~~~~~~~~--Dv~sl--------------G~i~~~l~tg~~pf~~~~~~~~~~~~~~~  219 (294)
T PLN00009        158 RTFTHEVVTLWYRAPEILLG--SRHYSTPV--DIWSV--------------GCIFAEMVNQKPLFPGDSEIDELFKIFRI  219 (294)
T ss_pred             cccccCceeecccCHHHHhC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            12234577899999999861  34567777  99999              9999998776652     12222222222


Q ss_pred             cCCCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ...|..... ....+..+.    ...+.... .... ......++.+.+++     .+||+.||++|||+.++++||||.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~-~~~~~~~~~~~~~i-----~~~l~~~P~~Rps~~~~l~~~~~~  288 (294)
T PLN00009        220 LGTPNEETWPGVTSLPDYK----SAFPKWPP-KDLA-TVVPTLEPAGVDLL-----SKMLRLDPSKRITARAALEHEYFK  288 (294)
T ss_pred             hCCCChhhccccccchhhh----hhcccCCC-CCHH-HhCcCCChHHHHHH-----HHHccCChhhCcCHHHHhcCchHh
Confidence            222211110 000000000    00010000 0000 00112236667788     999999999999999999999998


Q ss_pred             cC
Q psy7309         236 EG  237 (454)
Q Consensus       236 ~~  237 (454)
                      ..
T Consensus       289 ~~  290 (294)
T PLN00009        289 DL  290 (294)
T ss_pred             HH
Confidence            54

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.88  E-value=2.2e-23  Score=204.07  Aligned_cols=154  Identities=16%  Similarity=0.213  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       123 ~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~-----------------------~~~  179 (291)
T cd05094         123 SQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYST-----------------------DYY  179 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEECCCCcccccCCC-----------------------cee
Confidence            357889999999999999999999999999999999999999999999754210                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......|+..|+|||++.   +..++.++  ||||+              |+++|||++ |.+               |
T Consensus       180 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~t~g~~---------------p  225 (291)
T cd05094         180 RVGGHTMLPIRWMPPESIM---YRKFTTES--DVWSF--------------GVILWEIFTYGKQ---------------P  225 (291)
T ss_pred             ecCCCCCcceeecChHHhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223456788999999987   56788888  99999              999999765 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.||++|||++++++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         226 WFQLSNTEVIECITQGRVLERPRV-------------CPKEVYDIM-----LGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             CCCCCHHHHHHHHhCCCCCCCCcc-------------CCHHHHHHH-----HHHcccChhhCcCHHHHHH
Confidence            222222222222222221111111             125566788     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.88  E-value=2.9e-23  Score=198.99  Aligned_cols=154  Identities=31%  Similarity=0.403  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|+++||.|||++|++|+||||+||+++.++.++|+|||++.....                          .
T Consensus       100 ~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~--------------------------~  153 (258)
T cd05578         100 EQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTP--------------------------D  153 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCC--------------------------C
Confidence            35788999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||++.   ...++.++  |+||+              |+++|++++|..+               +
T Consensus       154 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~g~~p---------------~  199 (258)
T cd05578         154 TLTTSTSGTPGYMAPEVLC---RQGYSVAV--DWWSL--------------GVTAYECLRGKRP---------------Y  199 (258)
T ss_pred             ccccccCCChhhcCHHHHc---ccCCCCcc--cchhh--------------HHHHHHHHhCCCC---------------C
Confidence            1223456888999999987   45578888  99999              9999997765431               1


Q ss_pred             CCch---hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh--hhhhcCccc
Q psy7309         162 TGSN---VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS--EQNLCQPIS  234 (454)
Q Consensus       162 ~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta--~e~l~hp~f  234 (454)
                      ....   ......... .....+|...             +....++|     .+||+.||.+||++  +|+++||||
T Consensus       200 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~~i-----~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         200 RGHSRTIRDQIRAKQE-TADVLYPATW-------------STEAIDAI-----NKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             CCCCccHHHHHHHHhc-cccccCcccC-------------cHHHHHHH-----HHHccCChhHcCCccHHHHhcCCCC
Confidence            1111   111111111 1222233221             25666788     99999999999999  999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.88  E-value=2.4e-23  Score=198.98  Aligned_cols=155  Identities=29%  Similarity=0.393  Sum_probs=112.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC-eEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~-vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.++.|++.||.|||++|++|+||||+||+++.++. +||+|||.+.....                         ..
T Consensus       102 ~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~-------------------------~~  156 (257)
T cd08225         102 QILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLND-------------------------SM  156 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccC-------------------------Cc
Confidence            57889999999999999999999999999999998864 69999999875431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||++.   ...++.++  |+||+              |+++++++++..               |+
T Consensus       157 ~~~~~~~~~~~~~ape~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~---------------p~  202 (257)
T cd08225         157 ELAYTCVGTPYYLSPEICQ---NRPYNNKT--DIWSL--------------GCVLYELCTLKH---------------PF  202 (257)
T ss_pred             ccccccCCCccccCHHHHc---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1122346899999999987   45677778  99999              999999776543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...+..+.............+.             ..+....+++     .+||..+|++|||++|+++||||
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~i-----~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         203 EGNNLHQLVLKICQGYFAPISP-------------NFSRDLRSLI-----SQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             CCccHHHHHHHHhcccCCCCCC-------------CCCHHHHHHH-----HHHhccChhhCcCHHHHhhCCCC
Confidence            2222222222222111111111             1225667787     99999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.88  E-value=1.6e-23  Score=203.27  Aligned_cols=180  Identities=28%  Similarity=0.402  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++|++|+||||+||+++.++.+||+|||++.....                        ...
T Consensus       100 ~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~------------------------~~~  155 (287)
T cd07840         100 SQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTK------------------------RNS  155 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccC------------------------CCc
Confidence            46789999999999999999999999999999999999999999999875532                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      ...+...++..|+|||.+..  ...++.++  ||||+              |++++|++++.+..     ...+......
T Consensus       156 ~~~~~~~~~~~y~~PE~~~~--~~~~~~~~--Dv~sl--------------G~~l~el~t~~~p~~~~~~~~~~~~~~~~  217 (287)
T cd07840         156 ADYTNRVITLWYRPPELLLG--ATRYGPEV--DMWSV--------------GCILAELFLGKPIFQGSTELEQLEKIFEL  217 (287)
T ss_pred             ccccccccccccCCceeeEc--cccCChHH--HHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            12334567889999998761  34567777  99999              99999977765421     1111111111


Q ss_pred             cCCCCCCchhhhhhh--hhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         157 ENGPSTGSNVQKSLQ--KFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~--~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      ...|... .+.....  .... ......+...     ........++...+++     ++||..||.+|||+++++.|||
T Consensus       218 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i-----~~~l~~~P~~Rp~~~~~l~~~~  286 (287)
T cd07840         218 CGSPTDE-NWPGVSKLPWFENLKPKKPYKRRL-----REFFKHLIDPSALDLL-----DKLLTLDPKKRISADQALQHEY  286 (287)
T ss_pred             hCCCchh-hccccccchhhhhccccccchhHH-----HHHhcccCCHHHHHHH-----HHHcCCChhhCcCHHHHhhCcC
Confidence            1111111 0000000  0000 0000000000     0011111235566666     9999999999999999999999


Q ss_pred             c
Q psy7309         234 S  234 (454)
Q Consensus       234 f  234 (454)
                      |
T Consensus       287 ~  287 (287)
T cd07840         287 F  287 (287)
T ss_pred             C
Confidence            7

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.88  E-value=2e-23  Score=200.28  Aligned_cols=155  Identities=19%  Similarity=0.223  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+++++.|++.||+|||++||+||||||.||+++.++.+||+|||++.......                      ...
T Consensus        95 ~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~----------------------~~~  152 (257)
T cd05116          95 KNITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADE----------------------NYY  152 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCC----------------------Cee
Confidence            4678899999999999999999999999999999999999999999987543210                      000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   ...++.++  |+||+              |+++||+++ +.+               |
T Consensus       153 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~t~g~~---------------p  198 (257)
T cd05116         153 KAKTHGKWPVKWYAPECMN---YYKFSSKS--DVWSF--------------GVLMWEAFSYGQK---------------P  198 (257)
T ss_pred             eecCCCCCCccccCHhHhc---cCCcCchh--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1122234568899999987   56677788  99999              999999764 432               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........|...             ++.+.++|     .+||+.||++|||++++..
T Consensus       199 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~~~~~~p~~Rp~~~~i~~  250 (257)
T cd05116         199 YKGMKGNEVTQMIESGERMECPQRC-------------PPEMYDLM-----KLCWTYGVDERPGFAVVEL  250 (257)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCCC-------------CHHHHHHH-----HHHhccCchhCcCHHHHHH
Confidence            3333333334444433333333332             26677888     9999999999999997764

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.88  E-value=2.1e-23  Score=203.85  Aligned_cols=154  Identities=17%  Similarity=0.214  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+|||++.++.+||+|||++......                       ...
T Consensus       120 ~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~-----------------------~~~  176 (288)
T cd05093         120 SQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYST-----------------------DYY  176 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccCCccccccCC-----------------------cee
Confidence            357889999999999999999999999999999999999999999998754210                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  |+||+              ||++++|++ +.+               |
T Consensus       177 ~~~~~~~~~~~y~aPE~~~---~~~~~~~s--Diwsl--------------G~il~~l~t~g~~---------------p  222 (288)
T cd05093         177 RVGGHTMLPIRWMPPESIM---YRKFTTES--DVWSL--------------GVVLWEIFTYGKQ---------------P  222 (288)
T ss_pred             ecCCCCCccccccCHHHhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1122345678899999987   56778888  99999              999999775 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+..+.....+..             .+..+.+++     .+||+.||.+|||+.|++.
T Consensus       223 ~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rpt~~~v~~  274 (288)
T cd05093         223 WYQLSNNEVIECITQGRVLQRPRT-------------CPKEVYDLM-----LGCWQREPHMRLNIKEIHS  274 (288)
T ss_pred             CCCCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHccCChhhCCCHHHHHH
Confidence            222222223333332222222221             125667788     9999999999999998754

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.88  E-value=2.3e-23  Score=202.37  Aligned_cols=154  Identities=19%  Similarity=0.213  Sum_probs=108.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+++......                       ..
T Consensus       109 ~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~-----------------------~~  165 (279)
T cd05109         109 QDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDE-----------------------TE  165 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeeccccc-----------------------ce
Confidence            3678899999999999999999999999999999999999999999988543110                       00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  ||||+              ||++||+++ +.+               |
T Consensus       166 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~sl--------------G~~l~el~t~g~~---------------p  211 (279)
T cd05109         166 YHADGGKVPIKWMALESIL---HRRFTHQS--DVWSY--------------GVTVWELMTFGAK---------------P  211 (279)
T ss_pred             eecCCCccchhhCCHHHhc---cCCCCchh--HHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1112234567899999987   56788888  99999              999999654 332               1


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.||++|||+.+++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         212 YDGIPAREIPDLLEKGERLPQPPI-------------CTIDVYMIM-----VKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             CCCCCHHHHHHHHHCCCcCCCCcc-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            211111111112221212211211             125566777     9999999999999999884

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.88  E-value=2.9e-23  Score=202.07  Aligned_cols=154  Identities=18%  Similarity=0.206  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++|++||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       109 ~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  165 (279)
T cd05111         109 QRLLNWCVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPD-----------------------DKK  165 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCC-----------------------Ccc
Confidence            357889999999999999999999999999999999999999999999754210                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......|+..|+|||.+.   +..|+.++  ||||+              |+++||+++ |..               |
T Consensus       166 ~~~~~~~~~~~y~~pE~~~---~~~~~~~~--Dv~sl--------------G~il~el~t~g~~---------------p  211 (279)
T cd05111         166 YFYSEHKTPIKWMALESIL---FGRYTHQS--DVWSY--------------GVTVWEMMSYGAE---------------P  211 (279)
T ss_pred             cccCCCCCcccccCHHHhc---cCCcCchh--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1223345777899999987   56788888  99999              999999765 432               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             ......+++     .+||..||++|||+.|+++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         212 YAGMRPHEVPDLLEKGERLAQPQI-------------CTIDVYMVM-----VKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             CCCCCHHHHHHHHHCCCcCCCCCC-------------CCHHHHHHH-----HHHcCCCcccCcCHHHHHH
Confidence            222222222222222222222221             114455677     9999999999999998765

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.88  E-value=7.4e-23  Score=204.69  Aligned_cols=183  Identities=28%  Similarity=0.413  Sum_probs=120.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.........                    ....
T Consensus       108 ~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~--------------------~~~~  167 (337)
T cd07852         108 HKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEEN--------------------PENP  167 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhcccccccc--------------------ccCc
Confidence            56779999999999999999999999999999999999999999999855321000                    0112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhhc
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRRE  157 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~~  157 (454)
                      .....+||..|+|||++..  ...++.++  |+||+              |+++|++++|++.     ........+...
T Consensus       168 ~~~~~~~~~~y~aPE~~~~--~~~~~~~s--Di~sl--------------G~~l~el~tg~~pf~~~~~~~~~~~~~~~~  229 (337)
T cd07852         168 VLTDYVATRWYRAPEILLG--STRYTKGV--DMWSV--------------GCILGEMLLGKPLFPGTSTLNQLEKIIEVI  229 (337)
T ss_pred             chhcccccccccCceeeec--cccccccc--hHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHHh
Confidence            3344678999999998762  34567777  99999              9999997776642     122222222221


Q ss_pred             CCCCCCchhhh--------hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         158 NGPSTGSNVQK--------SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       158 ~~p~~~~~~~~--------~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      +.+. ......        .+..+.......+...         ... .+....+++     .+||+.||++|||+.+++
T Consensus       230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~-~~~~l~~li-----~~~l~~~P~~Rps~~~il  293 (337)
T cd07852         230 GPPS-AEDIESIKSPFAATMLDSLPSRPRKPLDEL---------LPK-ASDDALDLL-----KKLLVFNPNKRLTAEEAL  293 (337)
T ss_pred             CCCC-HHHHHHHHhhhHHHhhhhcccccccchhhh---------ccC-CCHHHHHHH-----HHhccCCcccccCHHHHh
Confidence            1111 111110        0111111111111111         111 236667777     999999999999999999


Q ss_pred             cCcccccCCC
Q psy7309         230 CQPISLEGSS  239 (454)
Q Consensus       230 ~hp~f~~~~~  239 (454)
                      +|||+.....
T Consensus       294 ~~~~~~~~~~  303 (337)
T cd07852         294 EHPYVAQFHN  303 (337)
T ss_pred             hChhhhhhcc
Confidence            9999987543

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=3e-23  Score=197.61  Aligned_cols=156  Identities=26%  Similarity=0.386  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||.|||++||+|+||||+||+++.++.++|+|||++.....                         ..
T Consensus        99 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~-------------------------~~  153 (254)
T cd06627          99 SLVAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLND-------------------------VS  153 (254)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCC-------------------------Cc
Confidence            45788999999999999999999999999999999999999999999985532                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||...   +..++.++  |+||+              |+++++++++..+               +
T Consensus       154 ~~~~~~~~~~~y~~pe~~~---~~~~~~~~--Dv~~l--------------G~~l~~l~~g~~p---------------~  199 (254)
T cd06627         154 KDDASVVGTPYWMAPEVIE---MSGASTAS--DIWSL--------------GCTVIELLTGNPP---------------Y  199 (254)
T ss_pred             ccccccccchhhcCHhhhc---CCCCCcch--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1133457889999999987   44577777  99999              9999997765532               1


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...................++..             .+....+++     .+||..+|++|||+.|++.||||
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         200 YDLNPMAALFRIVQDDHPPLPEG-------------ISPELKDFL-----MQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             CCccHHHHHHHHhccCCCCCCCC-------------CCHHHHHHH-----HHHHhCChhhCcCHHHHhcCCCC
Confidence            11111111111211222222222             225667788     99999999999999999999997

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.88  E-value=3e-23  Score=201.81  Aligned_cols=182  Identities=30%  Similarity=0.373  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||+.||+|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       100 ~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~-------------------------~~  154 (286)
T cd07846         100 SRVRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA-------------------------PG  154 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccC-------------------------Cc
Confidence            46788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      ...+...|+..|+|||++..  ...++.++  ||||+              |++++|+++|++..     .+.+......
T Consensus       155 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~~l~el~~g~~~~~~~~~~~~~~~~~~~  216 (286)
T cd07846         155 EVYTDYVATRWYRAPELLVG--DTKYGRAV--DIWAV--------------GCLVTEMLTGEPLFPGDSDIDQLYHIIKC  216 (286)
T ss_pred             cccCcccceeeccCcHHhcc--ccccCchH--hHHHH--------------HHHHHHHHcCCCCCCCCchHHHHHHHHHH
Confidence            22344578999999999862  34566777  99999              99999987765421     1222121111


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                       .+.... .................+........... ....+....+++     .+||+.||.+|||+.++++||||
T Consensus       217 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~li-----~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         217 -LGNLIP-RHQEIFQKNPLFAGMRLPEVKEIEPLEKR-FPKLSGLVLDLA-----KQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             -hCCCch-hhHHHhccchHhhccccccccCcchHHHh-CCCcCHHHHHHH-----HHHhcCCcccchhHHHHhcCCCC
Confidence             011000 00000000000000011110000000000 011235566777     99999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.88  E-value=1.5e-23  Score=229.86  Aligned_cols=161  Identities=29%  Similarity=0.395  Sum_probs=114.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-------CCcccCCCCCcEEEccC-----------------CCeEEecccchhhhhhhcC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ-------GIIHRDLKPVNIFIDYE-----------------DHVKIGDFGLATNILQKHA   57 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~-------giiHrDLKp~NILl~~~-----------------~~vKL~DFGla~~~~~~~~   57 (454)
                      ..++.|+.||+.||.|||+.       +||||||||+|||++..                 +.+||+|||++..+..   
T Consensus       118 ~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~---  194 (1021)
T PTZ00266        118 HAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGI---  194 (1021)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccc---
Confidence            35889999999999999984       49999999999999642                 3489999999975421   


Q ss_pred             CCccccccCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeee
Q psy7309          58 GPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKA  137 (454)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~  137 (454)
                                             .......+||+.|+|||++... ...|+.++  |||||              ||++|
T Consensus       195 -----------------------~s~~~s~vGTp~YmAPEvL~ge-~~~~s~KS--DVWSL--------------G~ILY  234 (1021)
T PTZ00266        195 -----------------------ESMAHSCVGTPYYWSPELLLHE-TKSYDDKS--DMWAL--------------GCIIY  234 (1021)
T ss_pred             -----------------------cccccccCCCccccCHHHHhcc-CCCCCchh--HHHHH--------------HHHHH
Confidence                                   1123345899999999998621 34577788  99999              99999


Q ss_pred             eecCCchhhHHHHHHHhhhcCCCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcC
Q psy7309         138 EVYKDRPKTLEELKHNIRRENGPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLN  216 (454)
Q Consensus       138 el~~~~~~~~~~l~~~i~~~~~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~  216 (454)
                      ||++|..+               +.... ....+..+....  .++..            ..+..+.+||     ..||.
T Consensus       235 ELLTGk~P---------------F~~~~~~~qli~~lk~~p--~lpi~------------~~S~eL~dLI-----~~~L~  280 (1021)
T PTZ00266        235 ELCSGKTP---------------FHKANNFSQLISELKRGP--DLPIK------------GKSKELNILI-----KNLLN  280 (1021)
T ss_pred             HHHHCCCC---------------CCcCCcHHHHHHHHhcCC--CCCcC------------CCCHHHHHHH-----HHHhc
Confidence            98776542               21111 111222222111  11111            1125667788     99999


Q ss_pred             CCCCCCCChhhhhcCcccccCCC
Q psy7309         217 HDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       217 ~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      .+|.+|||+.|+|.|||+....+
T Consensus       281 ~dPeeRPSa~QlL~h~~ik~i~~  303 (1021)
T PTZ00266        281 LSAKERPSALQCLGYQIIKNVGP  303 (1021)
T ss_pred             CChhHCcCHHHHhccHHHhhcCC
Confidence            99999999999999999986544

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.88  E-value=3.6e-23  Score=197.51  Aligned_cols=155  Identities=23%  Similarity=0.316  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||.+......                       ...
T Consensus       105 ~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~-----------------------~~~  161 (262)
T cd00192         105 KDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDD-----------------------DYY  161 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccc-----------------------ccc
Confidence            468899999999999999999999999999999999999999999999865321                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-chhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-RPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   ...++.++  ||||+              |+++|+++++ ..               |
T Consensus       162 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~g~~---------------p  207 (262)
T cd00192         162 RKKTGGKLPIRWMAPESLK---DGIFTSKS--DVWSF--------------GVLLWEIFTLGAT---------------P  207 (262)
T ss_pred             ccccCCCcCccccCHHHhc---cCCcchhh--ccHHH--------------HHHHHHHHhcCCC---------------C
Confidence            2234456788999999987   45788888  99999              9999997652 32               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             .++...+++     .+||+.||.+|||+.|++.+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         208 YPGLSNEEVLEYLRKGYRLPKPEY-------------CPDELYELM-----LSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCcc-------------CChHHHHHH-----HHHccCCcccCcCHHHHHHh
Confidence            333333333333333323333332             136677888     99999999999999988864

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.88  E-value=3.1e-23  Score=198.53  Aligned_cols=167  Identities=31%  Similarity=0.357  Sum_probs=118.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++|++|+||+|+||+++.++.+||+|||++..........                 .....
T Consensus        93 ~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~-----------------~~~~~  155 (265)
T cd05579          93 DVARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQIN-----------------LNDDE  155 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccc-----------------ccccc
Confidence            3678899999999999999999999999999999999999999999987532110000                 00011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......++..|+|||+..   ...++.+.  |+||+              |++++++++|..               |+
T Consensus       156 ~~~~~~~~~~~~~~Pe~~~---~~~~~~~~--Dv~sl--------------G~~~~~l~~g~~---------------p~  201 (265)
T cd05579         156 KEDKRIVGTPDYIAPEVIL---GQGHSKTV--DWWSL--------------GCILYEFLVGIP---------------PF  201 (265)
T ss_pred             ccccCcccCccccCHHHhc---CCCCCcch--hhHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1234457888999999987   45577777  99999              999999776543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh---hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS---EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta---~e~l~hp~f~~  236 (454)
                      ...........+.. ....++...           ..+....+++     ++||+.+|++|||+   .++|+||||..
T Consensus       202 ~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~~~~i-----~~~l~~~p~~Rpt~~~~~~~l~~~~~~~  262 (265)
T cd05579         202 HGETPEEIFQNILN-GKIEWPEDV-----------EVSDEAIDLI-----SKLLVPDPEKRLGAKSIEEIKNHPFFKG  262 (265)
T ss_pred             CCCCHHHHHHHHhc-CCcCCCccc-----------cCCHHHHHHH-----HHHhcCCHhhcCCCccHHHHhcCccccC
Confidence            22222222222222 122222221           0135667777     99999999999999   99999999974

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG1290|consensus

Probab=99.88  E-value=2.6e-23  Score=205.93  Aligned_cols=127  Identities=18%  Similarity=0.205  Sum_probs=76.0

Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----------hhHHHHH
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----------KTLEELK  151 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----------~~~~~l~  151 (454)
                      ..+..++|..|+|||++.   +.+|+..+  ||||+              +|++|||.+|..           ...+.+.
T Consensus       407 hFT~DIQTRQYRapEVll---GsgY~~~A--DiWS~--------------AC~~FELaTGDyLFePhsG~~Y~rDEDHiA  467 (590)
T KOG1290|consen  407 HFTEDIQTRQYRAPEVLL---GSGYSTSA--DIWST--------------ACMAFELATGDYLFEPHSGENYSRDEDHIA  467 (590)
T ss_pred             hhchhhhhhhccCcceee---cCCCCCch--hHHHH--------------HHHHHHhhcCceeecCCCCCCCCccHHHHH
Confidence            345679999999999999   89999999  99999              777777666332           2333344


Q ss_pred             HHhhhcCCCC-----CCchhhhhhhhhccCCCCCCCccc----------cccccccccccccccchhHHHHHHHHhhhcC
Q psy7309         152 HNIRRENGPS-----TGSNVQKSLQKFQKSPPSVYREWR----------SSFEWSTVRNNIKSNFQHFLILIHQQKWCLN  216 (454)
Q Consensus       152 ~~i~~~~~p~-----~~~~~~~~~~~~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~  216 (454)
                      .+|..++.-+     .+.-.+..   |...+...-...+          ..+.|+.    ....+..+||     .-||+
T Consensus       468 ~i~ELLG~iPr~ia~~Gk~SRdF---Fnr~G~LrhI~~LK~WpL~~VL~eKY~~s~----e~A~~fsdFL-----~PmLe  535 (590)
T KOG1290|consen  468 LIMELLGKIPRKIALGGKYSRDF---FNRRGELRHIRRLKPWPLYEVLIEKYEWSE----EDAQQFSDFL-----SPMLE  535 (590)
T ss_pred             HHHHHHhhccHHHHhcCcchHhh---hccccceecccccCCCcHHHHHHHHhCCCH----HHHHHHHHHH-----HHHHh
Confidence            4433222211     11111111   1111111111111          1122332    1113334455     99999


Q ss_pred             CCCCCCCChhhhhcCcccccCCCC
Q psy7309         217 HDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       217 ~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      .+|.+||||.++|+|||+.....+
T Consensus       536 f~PeKR~tA~~cl~hPwLn~~~~~  559 (590)
T KOG1290|consen  536 FDPEKRPTAAQCLKHPWLNPVAGP  559 (590)
T ss_pred             cCccccccHHHHhcCccccCCCCC
Confidence            999999999999999999976654

>KOG0695|consensus

Probab=99.88  E-value=2.4e-23  Score=197.66  Aligned_cols=181  Identities=24%  Similarity=0.266  Sum_probs=140.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.+..+|+.||+|||+.|||.||||.+|+|++..|++||.|+|.++.-.                         ..+
T Consensus       351 eharfys~ei~lal~flh~rgiiyrdlkldnvlldaeghikltdygmcke~l-------------------------~~g  405 (593)
T KOG0695|consen  351 EHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGL-------------------------GPG  405 (593)
T ss_pred             HHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccCCceeecccchhhcCC-------------------------CCC
Confidence            3578899999999999999999999999999999999999999999998421                         234


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+++|||.|.|||++.   +..|+.++  |.|+|              |+++|||+.|+.+.        ...+.--
T Consensus       406 d~tstfcgtpnyiapeilr---geeygfsv--dwwal--------------gvlmfemmagrspf--------divgm~n  458 (593)
T KOG0695|consen  406 DTTSTFCGTPNYIAPEILR---GEEYGFSV--DWWAL--------------GVLMFEMMAGRSPF--------DIVGMDN  458 (593)
T ss_pred             cccccccCCCcccchhhhc---ccccCcee--hHHHH--------------HHHHHHHHcCCCCc--------ceecCCC
Confidence            4556789999999999999   89999999  99999              99999977766421        0112222


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC------hhhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS------SEQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt------a~e~l~hp~f~  235 (454)
                      ++.+....+.++.-.....+|..++             ..+..++     +..|++||++|..      .+++..|+||.
T Consensus       459 ~d~ntedylfqvilekqiriprsls-------------vkas~vl-----kgflnkdp~erlgc~~~~g~~dik~h~ffr  520 (593)
T KOG0695|consen  459 PDMNTEDYLFQVILEKQIRIPRSLS-------------VKASHVL-----KGFLNKDPKERLGCRPQTGFSDIKSHAFFR  520 (593)
T ss_pred             cccchhHHHHHHHhhhcccccceee-------------hhhHHHH-----HHhhcCCcHHhcCCCcccchhhhhcchhhh
Confidence            3344455554444455666666542             4455677     9999999999975      57888999997


Q ss_pred             cCCCCCCCccCccccccCCCCCCCC
Q psy7309         236 EGSSSGLSVLGSEQLLTCDHIPPPL  260 (454)
Q Consensus       236 ~~~~~~~~~~~~~~ll~~~~~~~~~  260 (454)
                              .++|+-+.+....||..
T Consensus       521 --------~idwd~leqk~v~ppf~  537 (593)
T KOG0695|consen  521 --------SIDWDLLEQKQVLPPFQ  537 (593)
T ss_pred             --------hCCHHHHhhcccCCCCC
Confidence                    36788887877788753

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.88  E-value=3.1e-23  Score=204.20  Aligned_cols=153  Identities=23%  Similarity=0.299  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.||+.||+|||++||+||||||+||+++.++.+||+|||+++.....                       ....
T Consensus       138 ~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~-----------------------~~~~  194 (304)
T cd05101         138 DLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNI-----------------------DYYK  194 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeecccccceEEEcCCCcEEECCCccceecccc-----------------------cccc
Confidence            46788999999999999999999999999999999999999999999754321                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+++.|+|||++.   +..|+.++  ||||+              |+++|++++ +..               |+
T Consensus       195 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~g~~---------------p~  240 (304)
T cd05101         195 KTTNGRLPVKWMAPEALF---DRVYTHQS--DVWSF--------------GVLMWEIFTLGGS---------------PY  240 (304)
T ss_pred             cccCCCCCceeeCchhhc---cCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------------Cc
Confidence            122345677899999987   56788888  99999              999999765 322               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.+.......+........+..             .+....+++     .+||..+|.+|||+.|+++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rps~~e~l~  291 (304)
T cd05101         241 PGIPVEELFKLLKEGHRMDKPAN-------------CTNELYMMM-----RDCWHAIPSHRPTFKQLVE  291 (304)
T ss_pred             ccCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcccChhhCCCHHHHHH
Confidence            33333333333332222222222             125566777     9999999999999998886

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.88  E-value=3e-23  Score=198.89  Aligned_cols=149  Identities=19%  Similarity=0.277  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+++++.|++.||+|||++|++||||||+||+++.++.+||+|||++.....                           
T Consensus       102 ~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~---------------------------  154 (256)
T cd05082         102 DCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS---------------------------  154 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccc---------------------------
Confidence            45788999999999999999999999999999999999999999999874321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                       ......++..|+|||++.   ...++.++  ||||+              ||++|++++ |++               |
T Consensus       155 -~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~i~~~l~~~g~~---------------p  199 (256)
T cd05082         155 -TQDTGKLPVKWTAPEALR---EKKFSTKS--DVWSF--------------GILLWEIYSFGRV---------------P  199 (256)
T ss_pred             -cCCCCccceeecCHHHHc---cCCCCchh--hhHHH--------------HHHHHHHHhCCCC---------------C
Confidence             112234456799999987   56678888  99999              999999764 433               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             ..+...+++     .+||+.||++|||+.++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         200 YPRIPLKDVVPRVEKGYKMDAPDG-------------CPPVVYDVM-----KQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             CCCCCHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHhcCChhhCcCHHHHHH
Confidence            222222223333332222222221             125667788     9999999999999998864

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.88  E-value=2.6e-23  Score=204.07  Aligned_cols=182  Identities=23%  Similarity=0.315  Sum_probs=114.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||+.||+|+||||+||+++.++.+||+|||++......                        ..
T Consensus       116 ~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~------------------------~~  171 (302)
T cd07864         116 DHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSE------------------------ES  171 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccccccCC------------------------cc
Confidence            468899999999999999999999999999999999999999999998755320                        11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                      .......++..|+|||++..  ...++.++  ||||+              ||+++|+++|++..     ...+......
T Consensus       172 ~~~~~~~~~~~y~~PE~~~~--~~~~~~~~--Di~sl--------------G~~~~el~~g~~~~~~~~~~~~~~~~~~~  233 (302)
T cd07864         172 RPYTNKVITLWYRPPELLLG--EERYGPAI--DVWSC--------------GCILGELFTKKPIFQANQELAQLELISRL  233 (302)
T ss_pred             cccccceeccCccChHHhcC--CCCCCchh--HHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            12223456888999998762  23466777  99999              99999977766421     1222222121


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .+.|... .+..... .............. -.+.... ...+....+++     .+||+.||.+|||+.+++.||||
T Consensus       234 ~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~li-----~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         234 CGSPCPA-VWPDVIK-LPYFNTMKPKKQYR-RRLREEF-SFIPTPALDLL-----DHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             hCCCChh-hcccccc-cccccccccccccc-cchhhhc-CCCCHHHHHHH-----HHHccCChhhCCCHHHHhcCCCC
Confidence            1222111 0000000 00000000000000 0000000 11235667777     99999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>KOG0193|consensus

Probab=99.88  E-value=1.3e-23  Score=212.99  Aligned_cols=162  Identities=25%  Similarity=0.327  Sum_probs=117.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           1 MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         1 ~~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      |.....|++||+.|+.|||.++|||||||..|||+..++.|||+|||++..-..      .                 ..
T Consensus       487 m~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~------w-----------------~g  543 (678)
T KOG0193|consen  487 MNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTR------W-----------------SG  543 (678)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeeeee------e-----------------cc
Confidence            456789999999999999999999999999999999999999999999974211      0                 22


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........|...|||||++..+...+|+..+  ||||+              ||++|||++|..+...+..+.       
T Consensus       544 ~~q~~qp~gsilwmAPEvIRmqd~nPfS~qS--DVYaF--------------GiV~YELltg~lPysi~~~dq-------  600 (678)
T KOG0193|consen  544 EQQLEQPHGSLLWMAPEVIRMQDDNPFSFQS--DVYAF--------------GIVWYELLTGELPYSIQNRDQ-------  600 (678)
T ss_pred             ccccCCCccchhhhcHHHHhhcccCCCCccc--chhhh--------------hHHHHHHHhCcCCcCCCChhh-------
Confidence            3345556788999999999877778999999  99999              999999877654221222111       


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                              ++..+..+.-  .|...      ... .....++++|+     ..||..+|++||+..++|.
T Consensus       601 --------IifmVGrG~l--~pd~s------~~~-s~~pk~mk~Ll-----~~C~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  601 --------IIFMVGRGYL--MPDLS------KIR-SNCPKAMKRLL-----SDCWKFDREERPLFPQLLS  648 (678)
T ss_pred             --------eEEEeccccc--Cccch------hhh-ccCHHHHHHHH-----HHHHhcCcccCccHHHHHH
Confidence                    1222211110  11110      000 11114778888     9999999999999998875

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.88  E-value=3.4e-23  Score=201.60  Aligned_cols=154  Identities=21%  Similarity=0.264  Sum_probs=111.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.|++.||+|||++||+||||||+|||++.++.+||+|||+++.....                       ....
T Consensus       125 ~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~-----------------------~~~~  181 (283)
T cd05090         125 DFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSA-----------------------DYYR  181 (283)
T ss_pred             HHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEEeccccccccccCC-----------------------ccee
Confidence            45779999999999999999999999999999999999999999999854311                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   +..++.++  |+||+              |+++|||++ +.+               |+
T Consensus       182 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~el~~~g~~---------------p~  227 (283)
T cd05090         182 VQPKSLLPIRWMPPEAIM---YGKFSSDS--DIWSF--------------GVVLWEIFSFGLQ---------------PY  227 (283)
T ss_pred             cccCCCccceecChHHhc---cCCCCchh--hhHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            223345677899999987   56678888  99999              999999775 432               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+.........+........+..             ..+...+++     .+||+.||.+||++.+++++
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         228 YGFSNQEVIEMVRKRQLLPCSED-------------CPPRMYSLM-----TECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             CCCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcccCcccCcCHHHHHHH
Confidence            22222222333322222222222             225667788     99999999999999988764

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>KOG0668|consensus

Probab=99.88  E-value=3.5e-23  Score=187.71  Aligned_cols=183  Identities=23%  Similarity=0.339  Sum_probs=131.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.+++|+|.||.|+|++||+|||+||.|+++|... .++|+|.|+|-...                          .+
T Consensus       133 dIryY~~elLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYH--------------------------p~  186 (338)
T KOG0668|consen  133 DIRYYIYELLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYH--------------------------PG  186 (338)
T ss_pred             hHHHHHHHHHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcC--------------------------CC
Confidence            5788999999999999999999999999999999765 69999999998763                          23


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeec-CCch-----hhHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVY-KDRP-----KTLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~-~~~~-----~~~~~l~~~i~  155 (454)
                      ....-.+.+..|--||.+..  -..|+.+.  |+||+              ||++..|. ..+|     ...++|..+-+
T Consensus       187 ~eYnVRVASRyfKGPELLVd--y~~YDYSL--D~WS~--------------GcmlA~miFrkepFFhG~dN~DQLVkIak  248 (338)
T KOG0668|consen  187 KEYNVRVASRYFKGPELLVD--YQMYDYSL--DMWSL--------------GCMLASMIFRKEPFFHGHDNYDQLVKIAK  248 (338)
T ss_pred             ceeeeeeehhhcCCchheee--chhccccH--HHHHH--------------HHHHHHHHhccCcccCCCCCHHHHHHHHH
Confidence            44556688899999999873  57899999  99999              88888843 3333     33455544433


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCc---ccccccccccccc----ccccchhHHHHHHHHhhhcCCCCCCCCChhhh
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYRE---WRSSFEWSTVRNN----IKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN  228 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~~~----~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~  228 (454)
                      .++.    ......+.++.-.-++.+..   ..+...|+.+.+.    ..++++.+|+     .++|.+|-.+|+||.|+
T Consensus       249 VLGt----~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~Fi~~~n~hl~~peaiDll-----dklLrYDHqeRlTakEa  319 (338)
T KOG0668|consen  249 VLGT----DELYAYLNKYQIDLDPQFEDILGRHSRKPWSRFINSENQHLVSPEAIDLL-----DKLLRYDHQERLTAKEA  319 (338)
T ss_pred             HhCh----HHHHHHHHHHccCCChhHhhHhhccccccHHHhCCccccccCChHHHHHH-----HHHHhhccccccchHHH
Confidence            2211    12223333333222222222   2223457665543    3458888888     99999999999999999


Q ss_pred             hcCcccccCC
Q psy7309         229 LCQPISLEGS  238 (454)
Q Consensus       229 l~hp~f~~~~  238 (454)
                      +.||||....
T Consensus       320 m~HpyF~~~~  329 (338)
T KOG0668|consen  320 MAHPYFAPVR  329 (338)
T ss_pred             hcCchHHHHH
Confidence            9999998543

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.88  E-value=3.6e-23  Score=198.65  Aligned_cols=155  Identities=21%  Similarity=0.264  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.|++.||+|||+.|++||||||+|||++.++.+||+|||+++.......                     ....
T Consensus        99 ~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~---------------------~~~~  157 (262)
T cd05058          99 DLIGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEY---------------------YSVH  157 (262)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcc---------------------eeec
Confidence            4567889999999999999999999999999999999999999999875421100                     0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-chhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-RPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||.+.   ...++.++  ||||+              |+++||++++ .+               |+
T Consensus       158 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~~~~---------------~~  203 (262)
T cd05058         158 NHTGAKLPVKWMALESLQ---TQKFTTKS--DVWSF--------------GVLLWELMTRGAP---------------PY  203 (262)
T ss_pred             ccccCcCCccccChhHhc---cCccchHH--HHHHH--------------HHHHHHHHcCCCC---------------CC
Confidence            123345677899999987   56788888  99999              9999997663 32               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...........+........+..             .++...+++     .+||..+|++|||+.|++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rp~~~~il~  254 (262)
T cd05058         204 PDVDSFDITVYLLQGRRLLQPEY-------------CPDPLYEVM-----LSCWHPKPEMRPTFSELVS  254 (262)
T ss_pred             CCCCHHHHHHHHhcCCCCCCCCc-------------CCHHHHHHH-----HHHcCCChhhCCCHHHHHH
Confidence            22222222222222222222222             124566777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.88  E-value=4.2e-23  Score=197.84  Aligned_cols=153  Identities=21%  Similarity=0.310  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++||+||||||+||+++.++.+||+|||.++....                        ...
T Consensus       100 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~------------------------~~~  155 (256)
T cd05114         100 DMLLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLD------------------------DEY  155 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCC------------------------Cce
Confidence            45788999999999999999999999999999999999999999999875421                        001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  |+||+              |+++||+++ +++               |
T Consensus       156 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~s~--------------G~~l~el~~~g~~---------------p  201 (256)
T cd05114         156 TSSSGAKFPVKWSPPEVFN---FSKYSSKS--DVWSF--------------GVLMWEVFTEGKM---------------P  201 (256)
T ss_pred             eccCCCCCchhhCChhhcc---cCccchhh--hhHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1122334567899999987   56788888  99999              999999766 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +........+..+........|..             .+....+++     .+||+.||++|||++++++
T Consensus       202 ~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~li-----~~c~~~~p~~Rps~~~l~~  253 (256)
T cd05114         202 FEKKSNYEVVEMISRGFRLYRPKL-------------ASMTVYEVM-----YSCWHEKPEGRPTFAELLR  253 (256)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCCCC-------------CCHHHHHHH-----HHHccCCcccCcCHHHHHH
Confidence            333333333333333322222222             124566777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.88  E-value=3.5e-23  Score=196.11  Aligned_cols=156  Identities=31%  Similarity=0.488  Sum_probs=113.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||++||++|++|+||||+||+++.++.++|+|||.+.....                          .
T Consensus        98 ~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~--------------------------~  151 (253)
T cd05122          98 SQIAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSD--------------------------T  151 (253)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeeccccccccc--------------------------c
Confidence            46788999999999999999999999999999999999999999999875431                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.   ...++.+.  |+||+              |++++++++++.               |+
T Consensus       152 ~~~~~~~~~~~~~~PE~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~---------------p~  197 (253)
T cd05122         152 KARNTMVGTPYWMAPEVIN---GKPYDYKA--DIWSL--------------GITAIELAEGKP---------------PY  197 (253)
T ss_pred             ccccceecCCcccCHHHHc---CCCCCccc--cHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1134457889999999987   45577777  99999              999999777653               11


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      ....................+..   .        ..+....+++     .+||+.||++|||+.|+++|||
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~i-----~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         198 SELPPMKALFKIATNGPPGLRNP---E--------KWSDEFKDFL-----KKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             CCCchHHHHHHHHhcCCCCcCcc---c--------ccCHHHHHHH-----HHHccCChhhCCCHHHHhcCCC
Confidence            11111111111111111111111   0        0125566777     9999999999999999999998

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.88  E-value=2.8e-23  Score=201.64  Aligned_cols=159  Identities=28%  Similarity=0.442  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       101 ~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~-------------------------~~  155 (277)
T cd06641         101 TQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD-------------------------TQ  155 (277)
T ss_pred             HHHHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceeccc-------------------------ch
Confidence            45788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.   +..++.++  |+||+              |+++|++++|..+               +
T Consensus       156 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Dv~sl--------------G~~l~~l~~g~~p---------------~  201 (277)
T cd06641         156 IKRNTFVGTPFWMAPEVIK---QSAYDSKA--DIWSL--------------GITAIELAKGEPP---------------H  201 (277)
T ss_pred             hhhccccCCccccChhhhc---cCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1223457888999999987   55677777  99999              9999998776542               2


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      ...........+.......++..             ......+++     .+||+.||.+||++.++++||||...
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~Rp~~~~~l~~~~~~~~  259 (277)
T cd06641         202 SELHPMKVLFLIPKNNPPTLEGN-------------YSKPLKEFV-----EACLNKEPSFRPTAKELLKHKFIVRF  259 (277)
T ss_pred             CccchHHHHHHHhcCCCCCCCcc-------------cCHHHHHHH-----HHHccCChhhCcCHHHHHhCHHHhhh
Confidence            22221222222221222222221             125567788     99999999999999999999999864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.88  E-value=3.9e-23  Score=198.54  Aligned_cols=153  Identities=25%  Similarity=0.321  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.|++.||+|||++||+||||||+||+++.++.+||+|||++......                        ..
T Consensus       102 ~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~------------------------~~  157 (260)
T cd05070         102 PNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDN------------------------EY  157 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCc------------------------cc
Confidence            357899999999999999999999999999999999999999999999754210                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   ...++.++  |+||+              |+++|++++ +.+               |
T Consensus       158 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~~g~~---------------p  203 (260)
T cd05070         158 TARQGAKFPIKWTAPEAAL---YGRFTIKS--DVWSF--------------GILLTELVTKGRV---------------P  203 (260)
T ss_pred             ccccCCCCCccccChHHHh---cCCCcchh--hhHHH--------------HHHHHHHHhcCCC---------------C
Confidence            1112234567899999987   56678888  99999              999999765 433               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             .+....+++     .+||..||.+|||++++..
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rpt~~~l~~  255 (260)
T cd05070         204 YPGMNNREVLEQVERGYRMPCPQD-------------CPISLHELM-----LQCWKKDPEERPTFEYLQS  255 (260)
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCc-------------CCHHHHHHH-----HHHcccCcccCcCHHHHHH
Confidence            333333333333333322222222             125667788     9999999999999997763

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.88  E-value=5.3e-23  Score=205.50  Aligned_cols=197  Identities=24%  Similarity=0.273  Sum_probs=120.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+|+||||+||+++.++.+||+|||++..............           .......
T Consensus       119 ~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~-----------~~~~~~~  187 (335)
T PTZ00024        119 SQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSK-----------DETMQRR  187 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccceeecccccccccccc-----------ccccccc
Confidence            35788999999999999999999999999999999999999999999975432110000000           0000011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......+++.|+|||++..  ...++.++  |+||+              ||+++|+++|.+.     ..+.+...+..
T Consensus       188 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~~l~el~tg~~p~~~~~~~~~~~~i~~~  249 (335)
T PTZ00024        188 EEMTSKVVTLWYRAPELLMG--AEKYHFAV--DMWSV--------------GCIFAELLTGKPLFPGENEIDQLGRIFEL  249 (335)
T ss_pred             ccccccccccCCCCChhccc--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            22334567899999999861  23467777  99999              9999997776542     12222222222


Q ss_pred             cCCCCCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ...|....... ......... ....+..     +.... ...+..+.++|     ++||+.||++|||++|+|.||||.
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----~~~~~-~~~~~~~~~li-----~~~l~~~P~~R~s~~~~l~~~~~~  317 (335)
T PTZ00024        250 LGTPNEDNWPQAKKLPLYTEF-TPRKPKD-----LKTIF-PNASDDAIDLL-----QSLLKLNPLERISAKEALKHEYFK  317 (335)
T ss_pred             hCCCchhhCcchhhccccccc-CcCCccc-----HHHhC-cCCChHHHHHH-----HHHcCCCchhccCHHHHhcCcccC
Confidence            22222211000 000000000 0000000     00000 11235566777     999999999999999999999998


Q ss_pred             cCCC
Q psy7309         236 EGSS  239 (454)
Q Consensus       236 ~~~~  239 (454)
                      ....
T Consensus       318 ~~~~  321 (335)
T PTZ00024        318 SDPL  321 (335)
T ss_pred             CCCC
Confidence            6543

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.88  E-value=3.7e-23  Score=198.27  Aligned_cols=159  Identities=28%  Similarity=0.381  Sum_probs=117.8

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||+|||+ +|++|+||||+||+++.++.++|+|||.+.....                         .
T Consensus        99 ~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~-------------------------~  153 (264)
T cd06623          99 PVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLEN-------------------------T  153 (264)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceeccc-------------------------C
Confidence            3578899999999999999 9999999999999999999999999999875431                         1


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........++..|+|||.+.   ...++.++  |+||+              |+++|++++|..+.              
T Consensus       154 ~~~~~~~~~~~~y~~pE~~~---~~~~~~~~--Dv~sl--------------G~il~~l~tg~~p~--------------  200 (264)
T cd06623         154 LDQCNTFVGTVTYMSPERIQ---GESYSYAA--DIWSL--------------GLTLLECALGKFPF--------------  200 (264)
T ss_pred             CCcccceeecccccCHhhhC---CCCCCchh--hHHHH--------------HHHHHHHHhCCCCC--------------
Confidence            11123457889999999987   55777788  99999              99999987765421              


Q ss_pred             CCCc---hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         161 STGS---NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       161 ~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       ...   ........+........+..            ..+....++|     .+||..+|++|||+.|+++|||++.
T Consensus       201 -~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~li-----~~~l~~~p~~R~~~~~ll~~~~~~~  261 (264)
T cd06623         201 -LPPGQPSFFELMQAICDGPPPSLPAE------------EFSPEFRDFI-----SACLQKDPKKRPSAAELLQHPFIKK  261 (264)
T ss_pred             -ccccccCHHHHHHHHhcCCCCCCCcc------------cCCHHHHHHH-----HHHccCChhhCCCHHHHHhCHHHHh
Confidence             111   11222222222222222221            0225667888     9999999999999999999999974

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>KOG1989|consensus

Probab=99.88  E-value=1.5e-23  Score=221.45  Aligned_cols=171  Identities=21%  Similarity=0.263  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .+|.+||+|+++|+++||.+.  |||||||-|||||+.+|+.||||||.|+.......   ...+.             .
T Consensus       144 ~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~---~~~e~-------------~  207 (738)
T KOG1989|consen  144 DEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPT---SAQEV-------------N  207 (738)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCc---cHHHH-------------H
Confidence            479999999999999999998  99999999999999999999999999974321000   00000             0


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeee-ecCCchhhHHHHHHHhhhcC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAE-VYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~e-l~~~~~~~~~~l~~~i~~~~  158 (454)
                      .-...-...-|+.|||||++--..+...+.|+  |||+|              ||++|- ||...               
T Consensus       208 ~ve~eI~k~TTp~YRsPEMIDlysg~pI~eKs--DIWAL--------------GclLYkLCy~t~---------------  256 (738)
T KOG1989|consen  208 YVEEEIEKYTTPQYRSPEMIDLYSGLPIGEKS--DIWAL--------------GCLLYKLCYFTT---------------  256 (738)
T ss_pred             HHHHHHHhhCCccccChHHHhhhcCCCCcchh--HHHHH--------------HHHHHHHHHhCC---------------
Confidence            00001123459999999998766678889999  99999              999998 44333               


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       ||.......++     ...+.+|...           ..+..+++||     +.||+.||.+||++-|++.+-+-....
T Consensus       257 -PFe~sg~laIl-----ng~Y~~P~~p-----------~ys~~l~~LI-----~~mL~~nP~~RPnI~Qv~~~~~~l~~~  314 (738)
T KOG1989|consen  257 -PFEESGKLAIL-----NGNYSFPPFP-----------NYSDRLKDLI-----RTMLQPNPDERPNIYQVLEEIFELANK  314 (738)
T ss_pred             -CcCcCcceeEE-----eccccCCCCc-----------cHHHHHHHHH-----HHHhccCcccCCCHHHHHHHHHHHhcC
Confidence             33332111111     3455555541           2347888999     999999999999999999765544444


Q ss_pred             CCC
Q psy7309         239 SSG  241 (454)
Q Consensus       239 ~~~  241 (454)
                      .+.
T Consensus       315 ~~~  317 (738)
T KOG1989|consen  315 PCP  317 (738)
T ss_pred             CCC
Confidence            443

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.88  E-value=4.5e-23  Score=198.65  Aligned_cols=158  Identities=26%  Similarity=0.384  Sum_probs=112.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.|++.||+|||++||+|+||||+||+++.++.+||+|||++.......                      ....
T Consensus       107 ~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~----------------------~~~~  164 (265)
T cd06652         107 VTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTIC----------------------LSGT  164 (265)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCcccccccccc----------------------cccc
Confidence            578899999999999999999999999999999999999999999987542100                      0111


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......||..|+|||++.   +..++.++  |+||+              |+++|++++|+.+.               .
T Consensus       165 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~el~~g~~p~---------------~  210 (265)
T cd06652         165 GMKSVTGTPYWMSPEVIS---GEGYGRKA--DIWSV--------------GCTVVEMLTEKPPW---------------A  210 (265)
T ss_pred             ccccCCCCccccChhhhc---CCCCCcch--hHHHH--------------HHHHHHHhhCCCCC---------------C
Confidence            223456899999999987   56677788  99999              99999977765421               1


Q ss_pred             CchhhhhhhhhccCC-CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         163 GSNVQKSLQKFQKSP-PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ............... ....|..             .+....++|     .+|| .+|++|||++|+++|||+.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l-~~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         211 EFEAMAAIFKIATQPTNPVLPPH-------------VSDHCRDFL-----KRIF-VEAKLRPSADELLRHTFVH  265 (265)
T ss_pred             ccchHHHHHHHhcCCCCCCCchh-------------hCHHHHHHH-----HHHh-cChhhCCCHHHHhcCcccC
Confidence            111111111111111 1111211             225566777     9998 4999999999999999974

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>KOG0586|consensus

Probab=99.88  E-value=6e-23  Score=209.03  Aligned_cols=159  Identities=26%  Similarity=0.291  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.+|.|+++|++|||+++|+|||||.+|||++.+.++||+|||++..+.                          ...
T Consensus       156 ~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~--------------------------~~~  209 (596)
T KOG0586|consen  156 EARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFD--------------------------YGL  209 (596)
T ss_pred             hhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeec--------------------------ccc
Confidence            578899999999999999999999999999999999999999999998763                          345


Q ss_pred             CCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...+.+|++.|.|||++.   +..| +..+  |+||+              |+++|-+..|..               ||
T Consensus       210 ~lqt~cgsppyAaPEl~~---g~~y~gpe~--D~Wsl--------------gvvly~LV~GsL---------------PF  255 (596)
T KOG0586|consen  210 MLQTFCGSPPYAAPELFN---GKKYDGPEV--DIWSL--------------GVVLYALVEGSL---------------PF  255 (596)
T ss_pred             cccccCCCCCccChHhhc---CcccCCcce--ehhhh--------------hhhheeeeeccc---------------cc
Confidence            677789999999999998   4555 4567  99999              999998655432               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      .+.+....-.+.. ..+..+|-.+             +.+.+++|     +++|..+|.+|++.++++.|.|.......
T Consensus       256 DG~~lk~Lr~rvl-~gk~rIp~~m-------------s~dce~lL-----rk~lvl~Pskr~~~dqim~~~W~n~~~~~  315 (596)
T KOG0586|consen  256 DGQNLKELRPRVL-RGKYRIPFYM-------------SCDCEDLL-----RKFLVLNPSKRGPCDQIMKDRWRNDLLEA  315 (596)
T ss_pred             CCcccccccchhe-eeeeccccee-------------echhHHHH-----HHhhccCccccCCHHHhhhhcccchhhhh
Confidence            4444443333333 2333444432             36778999     99999999999999999999999977664

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.88  E-value=2.8e-23  Score=201.63  Aligned_cols=155  Identities=19%  Similarity=0.245  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..+.+++.||+.||+|||++|++||||||+||+++.++   .+||+|||+++......                      
T Consensus       116 ~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~----------------------  173 (277)
T cd05036         116 KDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRAS----------------------  173 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCcc----------------------
Confidence            45778999999999999999999999999999998765   58999999998542110                      


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhc
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRE  157 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~  157 (454)
                       .........++..|+|||++.   +..++.++  ||||+              ||++||+++ +..             
T Consensus       174 -~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~~g~~-------------  220 (277)
T cd05036         174 -YYRKGGRAMLPIKWMPPEAFL---DGIFTSKT--DVWSF--------------GVLLWEIFSLGYM-------------  220 (277)
T ss_pred             -ceecCCCCCccHhhCCHHHHh---cCCcCchh--HHHHH--------------HHHHHHHHcCCCC-------------
Confidence             001112234456899999987   66788888  99999              999999764 432             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                        |+...........+........|...             +....+++     .+||+.||++|||+.++++|
T Consensus       221 --pf~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~i-----~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         221 --PYPGRTNQEVMEFVTGGGRLDPPKGC-------------PGPVYRIM-----TDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             --CCCCCCHHHHHHHHHcCCcCCCCCCC-------------CHHHHHHH-----HHHcCCCcccCcCHHHHHHH
Confidence              33332223333333222222222221             25556777     99999999999999999875

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.88  E-value=4.8e-23  Score=197.75  Aligned_cols=155  Identities=27%  Similarity=0.406  Sum_probs=112.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++. +.+||+|||++.....                         ..
T Consensus       106 ~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~-------------------------~~  159 (260)
T cd08222         106 NQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMG-------------------------SC  159 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCC-------------------------Cc
Confidence            357889999999999999999999999999999974 6799999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||.+.   +..++.++  |+||+              |+++++++++..               |+
T Consensus       160 ~~~~~~~~~~~~~~pe~~~---~~~~~~~~--Dv~sl--------------G~~~~~l~~~~~---------------~~  205 (260)
T cd08222         160 DLATTFTGTPYYMSPEALK---HQGYDSKS--DIWSL--------------GCILYEMCCLAH---------------AF  205 (260)
T ss_pred             ccccCCCCCcCccCHHHHc---cCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1223356788999999986   56677788  99999              999999766543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .................+..+..             .+....++|     .+||..||.+||++.|+++||||
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         206 EGQNFLSVVLRIVEGPTPSLPET-------------YSRQLNSIM-----QSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             CCccHHHHHHHHHcCCCCCCcch-------------hcHHHHHHH-----HHHhcCChhhCcCHHHHhhCCCC
Confidence            22222222222222222222222             125566777     99999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.88  E-value=5e-23  Score=205.26  Aligned_cols=107  Identities=20%  Similarity=0.252  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+|||++.++.+|++|||.+..........                .  ....
T Consensus       102 ~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~----------------~--~~~~  163 (328)
T cd08226         102 LIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKA----------------K--VVYD  163 (328)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccc----------------c--cccc
Confidence            467899999999999999999999999999999999999999998765432110000                0  0000


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      ......++..|+|||++... ...|+.++  ||||+              ||+++++++|.+
T Consensus       164 ~~~~~~~~~~y~aPE~~~~~-~~~~~~~~--Diwsl--------------G~~l~el~~g~~  208 (328)
T cd08226         164 FPQFSTSVLPWLSPELLRQD-LYGYNVKS--DIYSV--------------GITACELATGRV  208 (328)
T ss_pred             ccccccCccCccChhhhcCC-CCCCCchh--hHHHH--------------HHHHHHHHhCCC
Confidence            11112356679999998721 23467777  99999              999999776654

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG1006|consensus

Probab=99.88  E-value=4.8e-23  Score=190.48  Aligned_cols=164  Identities=24%  Similarity=0.292  Sum_probs=117.5

Q ss_pred             HHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCCCc
Q psy7309           7 LLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHT   85 (454)
Q Consensus         7 i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (454)
                      |.--++.||.||.+ ..|||||+||+|||++..|.|||||||.+..+..                          ....+
T Consensus       172 ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~--------------------------SiAkT  225 (361)
T KOG1006|consen  172 ITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVD--------------------------SIAKT  225 (361)
T ss_pred             eeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHHH--------------------------HHHhh
Confidence            34445789999985 5899999999999999999999999999987753                          23466


Q ss_pred             CcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCCch
Q psy7309          86 GQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSN  165 (454)
Q Consensus        86 ~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~~~  165 (454)
                      ..+|...|||||-+... ..+|+-.+  |+|||              |++++|+.+|..+               ..+++
T Consensus       226 ~daGCrpYmAPERi~p~-~~gyDiRS--DvWSL--------------GITL~EvAtG~fP---------------yr~w~  273 (361)
T KOG1006|consen  226 VDAGCRPYMAPERIDPS-DKGYDIRS--DVWSL--------------GITLYEVATGNFP---------------YRKWD  273 (361)
T ss_pred             hccCCccccChhccCCc-cCCcchhh--hhhhh--------------cceEeeeecCCCC---------------cchHH
Confidence            77999999999999743 34688888  99999              9999998887651               11111


Q ss_pred             -hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCC
Q psy7309         166 -VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSG  241 (454)
Q Consensus       166 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~  241 (454)
                       ..+-+..+..+.++.+-.....+.        .+.....+|     .-||.+|-++||+..+++++||+......+
T Consensus       274 svfeql~~Vv~gdpp~l~~~~~~~~--------~s~~~~~fi-----ntCl~Kd~~~Rpky~~Lk~~~fyr~y~~~~  337 (361)
T KOG1006|consen  274 SVFEQLCQVVIGDPPILLFDKECVH--------YSFSMVRFI-----NTCLIKDRSDRPKYDDLKKFPFYRMYAVEG  337 (361)
T ss_pred             HHHHHHHHHHcCCCCeecCcccccc--------cCHHHHHHH-----HHHhhcccccCcchhhhhcCchhhhhhhcC
Confidence             111112222233333332211111        123344455     999999999999999999999998765543

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.88  E-value=4.1e-23  Score=207.34  Aligned_cols=182  Identities=29%  Similarity=0.370  Sum_probs=117.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                           
T Consensus       118 ~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~---------------------------  170 (343)
T cd07880         118 DRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDS---------------------------  170 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeccccccccc---------------------------
Confidence            46788999999999999999999999999999999999999999999874321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-----HHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-----LEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-----~~~l~~~i~~  156 (454)
                       ......+++.|+|||++..  ...++.++  |+||+              |++++++++|++..     ...+...+..
T Consensus       171 -~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~ll~~l~~g~~pf~~~~~~~~~~~~~~~  231 (343)
T cd07880         171 -EMTGYVVTRWYRAPEVILN--WMHYTQTV--DIWSV--------------GCIMAEMLTGKPLFKGHDHLDQLMEIMKV  231 (343)
T ss_pred             -CccccccCCcccCHHHHhC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence             1223467889999999862  23567777  99999              99999977765421     1222222221


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccc--cccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTV--RNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...+. . ..   ...+.......+....+.+.+..+  .....++.+.++|     .+||+.||++|||+.+++.||||
T Consensus       232 ~~~~~-~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~l~~dP~~R~t~~~~l~~~~~  301 (343)
T cd07880         232 TGTPS-K-EF---VQKLQSEDAKNYVKKLPRFRKKDFRSLLPNANPLAVNVL-----EKMLVLDAESRITAAEALAHPYF  301 (343)
T ss_pred             cCCCC-H-HH---HHhhcchhHHHHHHhccccCcchHHHhccCCChHHHHHH-----HHHcCCChhhCCCHHHHhcCccH
Confidence            11110 0 00   000000000000000000000000  0012235566777     99999999999999999999999


Q ss_pred             ccCCC
Q psy7309         235 LEGSS  239 (454)
Q Consensus       235 ~~~~~  239 (454)
                      .....
T Consensus       302 ~~~~~  306 (343)
T cd07880         302 EEFHD  306 (343)
T ss_pred             hhhcC
Confidence            86543

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.88  E-value=4.8e-23  Score=200.84  Aligned_cols=160  Identities=28%  Similarity=0.432  Sum_probs=116.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.||+|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       116 ~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~-------------------------~~  170 (286)
T cd06614         116 PQIAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTK-------------------------EK  170 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhcc-------------------------ch
Confidence            46788999999999999999999999999999999999999999999875431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......++..|+|||++.   +..++.++  |+||+              |+++|++++|..               |+
T Consensus       171 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Dv~sl--------------Gvil~~l~~g~~---------------p~  216 (286)
T cd06614         171 SKRNSVVGTPYWMAPEVIK---RKDYGPKV--DIWSL--------------GIMCIEMAEGEP---------------PY  216 (286)
T ss_pred             hhhccccCCcccCCHhHhc---CCCCCCcc--ccHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1223346788999999987   56678888  99999              999999877653               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ...........+........+..           ........++|     .+||+.+|.+|||+.++++||||..
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~~p~~Rpt~~~il~~~~~~~  275 (286)
T cd06614         217 LREPPLRALFLITTKGIPPLKNP-----------EKWSPEFKDFL-----NKCLVKDPEKRPSAEELLQHPFLKK  275 (286)
T ss_pred             CCCCHHHHHHHHHhcCCCCCcch-----------hhCCHHHHHHH-----HHHhccChhhCcCHHHHhhChHhhc
Confidence            21111111111111111111111           00125566777     9999999999999999999999997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.88  E-value=7.2e-23  Score=194.85  Aligned_cols=155  Identities=34%  Similarity=0.479  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||+.|++|+||||+||+++.++.++|+|||++.....                         ..
T Consensus        93 ~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~-------------------------~~  147 (250)
T cd05123          93 ERARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSS-------------------------EG  147 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceeccc-------------------------CC
Confidence            46788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.   +..++.+.  |+||+              |+++++++.+..               |+
T Consensus       148 ~~~~~~~~~~~~~~Pe~~~---~~~~~~~~--D~~sl--------------G~~~~~l~~g~~---------------p~  193 (250)
T cd05123         148 SRTNTFCGTPEYLAPEVLL---GKGYGKAV--DWWSL--------------GVLLYEMLTGKP---------------PF  193 (250)
T ss_pred             CcccCCcCCccccChHHhC---CCCCCchh--hHHHH--------------HHHHHHHHHCCC---------------CC
Confidence            2234567889999999987   45567777  99999              999999766543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh---hhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS---EQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta---~e~l~hp~f  234 (454)
                      ...........+.. ....++...             +....+++     ++||..||.+|||+   +++++||||
T Consensus       194 ~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~l~~~i-----~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         194 YAEDRKEIYEKILK-DPLRFPEFL-------------SPEARDLI-----SGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             CCCCHHHHHHHHhc-CCCCCCCCC-------------CHHHHHHH-----HHHhcCCHhhCCCcccHHHHHhCCCC
Confidence            22222222222222 223333331             25667787     99999999999999   999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.88  E-value=5.1e-23  Score=202.88  Aligned_cols=151  Identities=22%  Similarity=0.246  Sum_probs=107.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                          ..
T Consensus       125 ~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~--------------------------~~  178 (303)
T cd05088         125 QLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV--------------------------YV  178 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeCccccCcccch--------------------------hh
Confidence            5788999999999999999999999999999999999999999999863211                          00


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   +..++.++  ||||+              ||+++|+++ |.+               |+
T Consensus       179 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~---------------p~  224 (303)
T cd05088         179 KKTMGRLPVRWMAIESLN---YSVYTTNS--DVWSY--------------GVLLWEIVSLGGT---------------PY  224 (303)
T ss_pred             hcccCCCcccccCHHHHh---ccCCcccc--cchhh--------------hhHHHHHHhcCCC---------------Cc
Confidence            111223466799999987   56678888  99999              999999765 433               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      ...........+........+..             .++...+++     .+||+.||++|||+++++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         225 CGMTCAELYEKLPQGYRLEKPLN-------------CDDEVYDLM-----RQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             ccCChHHHHHHHhcCCcCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            22222222222221111111111             225566777     99999999999999988864

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.88  E-value=7.4e-23  Score=197.76  Aligned_cols=164  Identities=23%  Similarity=0.351  Sum_probs=114.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++|++|+||||+||+++.++.++|+|||++......                       ...
T Consensus       108 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~-----------------------~~~  164 (272)
T cd06629         108 QLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDI-----------------------YDN  164 (272)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeecccccccccc-----------------------ccc
Confidence            357788999999999999999999999999999999999999999998743210                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||++... ...++.++  |+||+              |++++++++|..+.               
T Consensus       165 ~~~~~~~~~~~y~~PE~~~~~-~~~~~~~~--Dv~sl--------------G~~l~~l~~g~~p~---------------  212 (272)
T cd06629         165 DQNMSMQGSVFWMAPEVIHSY-SQGYSAKV--DIWSL--------------GCVVLEMFAGRRPW---------------  212 (272)
T ss_pred             cccccccCCccccCHHHhccc-cCCCCccc--hhHHH--------------HHHHHHHHhCCCCC---------------
Confidence            123345688999999998722 12467777  99999              99999977765421               


Q ss_pred             CCchhhhhhhh-hccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQK-FQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ........... ........++....         ...+....+++     .+||..||.+|||++|+++||||
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~li-----~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         213 SDEEAIAAMFKLGNKRSAPPIPPDVS---------MNLSPVALDFL-----NACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             cCcchHHHHHHhhccccCCcCCcccc---------ccCCHHHHHHH-----HHHhcCChhhCCCHHHHhhCCCC
Confidence            11111111111 11111222222110         11236677788     99999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.87  E-value=5.9e-23  Score=197.26  Aligned_cols=153  Identities=23%  Similarity=0.290  Sum_probs=109.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.|++||||||+||+++.++.+||+|||++......                        ..
T Consensus       103 ~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~------------------------~~  158 (261)
T cd05072         103 PKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDN------------------------EY  158 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCC------------------------ce
Confidence            456789999999999999999999999999999999999999999999754210                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   ...++.++  |+||+              |+++|++++ |..               |
T Consensus       159 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~t~g~~---------------p  204 (261)
T cd05072         159 TAREGAKFPIKWTAPEAIN---FGSFTIKS--DVWSF--------------GILLYEIVTYGKI---------------P  204 (261)
T ss_pred             eccCCCccceecCCHHHhc---cCCCChhh--hhhhh--------------HHHHHHHHccCCC---------------C
Confidence            1122345677899999987   56678888  99999              999999775 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.||++|||++++.+
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         205 YPGMSNSDVMSALQRGYRMPRMEN-------------CPDELYDIM-----KTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHccCCcccCcCHHHHHH
Confidence            222222222222222211111111             124566777     9999999999999998763

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.87  E-value=5.9e-23  Score=203.38  Aligned_cols=153  Identities=21%  Similarity=0.303  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ++.+++.|++.||.|||++||+||||||+|||++.++.+||+|||+++......                       ...
T Consensus       135 ~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~-----------------------~~~  191 (314)
T cd05099         135 DLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDID-----------------------YYK  191 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCCCcEEEccccccccccccc-----------------------ccc
Confidence            467889999999999999999999999999999999999999999997543110                       001


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   +..++.++  ||||+              |+++||+++ +..               |+
T Consensus       192 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~~l~el~~~g~~---------------p~  237 (314)
T cd05099         192 KTSNGRLPVKWMAPEALF---DRVYTHQS--DVWSF--------------GILMWEIFTLGGS---------------PY  237 (314)
T ss_pred             ccccCCCCccccCHHHHc---cCCcCccc--hhhHH--------------HHHHHHHHhCCCC---------------CC
Confidence            111223456899999987   56788888  99999              999999665 322               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...+.......+........+..             ......+++     .+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~~p~~Rps~~~ll~  288 (314)
T cd05099         238 PGIPVEELFKLLREGHRMDKPSN-------------CTHELYMLM-----RECWHAVPTQRPTFKQLVE  288 (314)
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCCcccCcCHHHHHH
Confidence            33333333333332222222222             124566777     9999999999999998775

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.87  E-value=4.8e-23  Score=198.99  Aligned_cols=153  Identities=18%  Similarity=0.217  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+|||++.++.+|++|||.+.....                        ...
T Consensus       107 ~~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~------------------------~~~  162 (266)
T cd05064         107 GQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKS------------------------EAI  162 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccc------------------------cch
Confidence            46789999999999999999999999999999999999999999998764211                        000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  ||||+              ||++||++. |..               |
T Consensus       163 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~ell~~g~~---------------p  208 (266)
T cd05064         163 YTTMSGKSPVLWAAPEAIQ---YHHFSSAS--DVWSF--------------GIVMWEVMSYGER---------------P  208 (266)
T ss_pred             hcccCCCCceeecCHHHHh---hCCccchh--HHHHH--------------HHHHHHHhcCCCC---------------C
Confidence            1112334567899999987   67788888  99999              999999543 432               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........|...             .....+++     ..||+.+|.+|||++|+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~li-----~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         209 YWDMSGQDVIKAVEDGFRLPAPRNC-------------PNLLHQLM-----LDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             cCcCCHHHHHHHHHCCCCCCCCCCC-------------CHHHHHHH-----HHHcCCCchhCCCHHHHHH
Confidence            3332333333333323222222221             25566787     9999999999999998764

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.87  E-value=5e-23  Score=197.71  Aligned_cols=154  Identities=23%  Similarity=0.363  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||+.|++|+||||+||+++.++.+||+|||.+......                        ..
T Consensus       100 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~------------------------~~  155 (256)
T cd05113         100 SQLLEMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDD------------------------EY  155 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCC------------------------ce
Confidence            467899999999999999999999999999999999999999999998744210                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  |+||+              |+++|++++ |..               |
T Consensus       156 ~~~~~~~~~~~y~~pe~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~~g~~---------------p  201 (256)
T cd05113         156 TSSVGSKFPVRWSPPEVLL---YSKFSSKS--DVWAF--------------GVLMWEVYSLGKM---------------P  201 (256)
T ss_pred             eecCCCccChhhCCHHHHh---cCcccchh--HHHHH--------------HHHHHHHhcCCCC---------------C
Confidence            1112234567899999987   56688888  99999              999999765 432               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...+.......+........+..             .++...+++     .+||+.||.+|||+.+++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         202 YERFNNSETVEKVSQGLRLYRPHL-------------ASEKVYAIM-----YSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             cCcCCHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCCcccCCCHHHHHHh
Confidence            222222222233322222211211             125667777     99999999999999988763

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.87  E-value=4.5e-23  Score=200.67  Aligned_cols=154  Identities=17%  Similarity=0.222  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+|||++.++.+||+|||++......                       ...
T Consensus       122 ~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~-----------------------~~~  178 (280)
T cd05092         122 GQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST-----------------------DYY  178 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEECCCCceeEcCCC-----------------------cee
Confidence            457889999999999999999999999999999999999999999998743210                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+++.|+|||++.   +..++.++  ||||+              ||++||+++ +.+               |
T Consensus       179 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p  224 (280)
T cd05092         179 RVGGRTMLPIRWMPPESIL---YRKFTTES--DIWSF--------------GVVLWEIFTYGKQ---------------P  224 (280)
T ss_pred             ecCCCccccccccCHHHhc---cCCcCchh--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1122334578899999987   66788888  99999              999999765 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +....................+..             .++...+++     .+||+.||.+|||+++++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         225 WYQLSNTEAIECITQGRELERPRT-------------CPPEVYAIM-----QGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             CccCCHHHHHHHHHcCccCCCCCC-------------CCHHHHHHH-----HHHccCChhhCCCHHHHHH
Confidence            222222222222222222222222             125667888     9999999999999998864

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.87  E-value=6.1e-23  Score=208.74  Aligned_cols=154  Identities=26%  Similarity=0.333  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+++++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       214 ~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~-----------------------~~~  270 (375)
T cd05104         214 EDLLSFSYQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRND-----------------------SNY  270 (375)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCc-----------------------ccc
Confidence            457899999999999999999999999999999999999999999999754321                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  ||||+              ||++||+++ +..               |
T Consensus       271 ~~~~~~~~~~~y~aPE~~~---~~~~~~~s--Di~sl--------------G~~l~ellt~g~~---------------p  316 (375)
T cd05104         271 VVKGNARLPVKWMAPESIF---NCVYTFES--DVWSY--------------GILLWEIFSLGSS---------------P  316 (375)
T ss_pred             cccCCCCCCcceeChhHhc---CCCCCCCC--CHHHH--------------HHHHHHHHhcCCC---------------C
Confidence            1112234567899999997   66788888  99999              999999764 332               2


Q ss_pred             CCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...... ...+.+........|..             .+.+..+++     .+||+.||++|||+.|+++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~dP~~RPs~~eil~  369 (375)
T cd05104         317 YPGMPVDSKFYKMIKEGYRMLSPEC-------------APSEMYDIM-----KSCWDADPLKRPTFKQIVQ  369 (375)
T ss_pred             CCCCCchHHHHHHHHhCccCCCCCC-------------CCHHHHHHH-----HHHccCChhHCcCHHHHHH
Confidence            2221111 11111211111111211             125667888     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.87  E-value=7.6e-23  Score=201.66  Aligned_cols=176  Identities=23%  Similarity=0.258  Sum_probs=117.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+||+++.++.+||+|||+++.......... ...      .   .......
T Consensus       101 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~-~~~------~---~~~~~~~  170 (305)
T cd05609         101 DMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNL-YEG------H---IEKDTRE  170 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccc-ccc------c---cccchhh
Confidence            35678899999999999999999999999999999999999999998863211000000 000      0   0000011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.   +..++.++  |+||+              |+++||+++|..               |+
T Consensus       171 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~vl~el~~g~~---------------pf  216 (305)
T cd05609         171 FLDKQVCGTPEYIAPEVIL---RQGYGKPV--DWWAM--------------GIILYEFLVGCV---------------PF  216 (305)
T ss_pred             ccccCCccCccccCchhcc---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1222356889999999987   56788888  99999              999999776553               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC---hhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS---SEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt---a~e~l~hp~f~~~  237 (454)
                      .+............. ....|...          ...+....++|     ++||+.||.+|||   +.++|+||||...
T Consensus       217 ~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~li-----~~~l~~~P~~R~~~~~~~~ll~~~~~~~~  279 (305)
T cd05609         217 FGDTPEELFGQVISD-DIEWPEGD----------EALPADAQDLI-----SRLLRQNPLERLGTGGAFEVKQHRFFLGL  279 (305)
T ss_pred             CCCCHHHHHHHHHhc-ccCCCCcc----------ccCCHHHHHHH-----HHHhccChhhccCccCHHHHHhCccccCC
Confidence            222222222222211 11122111          11225567888     9999999999998   7899999999753

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.87  E-value=5.9e-23  Score=196.95  Aligned_cols=153  Identities=22%  Similarity=0.331  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.....                        ..
T Consensus       100 ~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~------------------------~~  155 (256)
T cd05059         100 EWLLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDD------------------------QY  155 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceecccc------------------------cc
Confidence            357889999999999999999999999999999999999999999998754210                        00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  |+||+              |+++|++++ +.+               |
T Consensus       156 ~~~~~~~~~~~y~~Pe~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~g~~---------------p  201 (256)
T cd05059         156 TSSQGTKFPVKWAPPEVFD---YSRFSSKS--DVWSF--------------GVLMWEVFSEGKM---------------P  201 (256)
T ss_pred             cccCCCCCCccccCHHHhc---cCCCCchh--hHHHH--------------HHHHHHHhccCCC---------------C
Confidence            0111123356799999988   56788888  99999              999999765 333               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.+|++|||+.|+++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rpt~~~~l~  253 (256)
T cd05059         202 YERFSNSEVVESVSAGYRLYRPKL-------------APTEVYTIM-----YSCWHEKPEDRPAFKKLLS  253 (256)
T ss_pred             CCCCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHhcCChhhCcCHHHHHH
Confidence            222222222222222222222221             235667788     9999999999999998876

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.87  E-value=5e-23  Score=203.14  Aligned_cols=154  Identities=23%  Similarity=0.308  Sum_probs=110.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.+++.|++.||+|||++|++||||||+||+++.++.+||+|||++......                       ...
T Consensus       140 ~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~-----------------------~~~  196 (307)
T cd05098         140 KDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI-----------------------DYY  196 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCCcEEECCCccccccccc-----------------------chh
Confidence            357789999999999999999999999999999999999999999998754210                       000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+++.|+|||++.   +..++.++  |+||+              ||++|||++ +..               |
T Consensus       197 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~~l~el~~~g~~---------------p  242 (307)
T cd05098         197 KKTTNGRLPVKWMAPEALF---DRIYTHQS--DVWSF--------------GVLLWEIFTLGGS---------------P  242 (307)
T ss_pred             hccccCCCccceeChHHhc---cCCCCcHH--HHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1111223457899999987   56778888  99999              999999765 332               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...+.......+........+..             .+....+++     .+||..+|.+|||+.++++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~evl~  294 (307)
T cd05098         243 YPGVPVEELFKLLKEGHRMDKPSN-------------CTNELYMMM-----RDCWHAVPSQRPTFKQLVE  294 (307)
T ss_pred             CCcCCHHHHHHHHHcCCCCCCCCc-------------CCHHHHHHH-----HHHcccChhhCcCHHHHHH
Confidence            223233333333332222222222             125666777     9999999999999998876

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.87  E-value=7.6e-23  Score=213.34  Aligned_cols=173  Identities=19%  Similarity=0.267  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....                        ...
T Consensus       309 ~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NILl~~~~~~kL~DFGla~~~~~------------------------~~~  364 (507)
T PLN03224        309 NVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLLVTVDGQVKIIDFGAAVDMCT------------------------GIN  364 (507)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCchHhEEECCCCcEEEEeCcCcccccc------------------------CCc
Confidence            35788999999999999999999999999999999999999999999864321                        001


Q ss_pred             CCCcCcccccceecccccccccc-----------------ccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVK-----------------AMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~-----------------~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      .......+|+.|+|||++.....                 ..|+.....|+||+              ||++++|+.+..
T Consensus       365 ~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~DvwSl--------------Gvil~em~~~~l  430 (507)
T PLN03224        365 FNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDSYTA--------------GVLLMQMCVPEL  430 (507)
T ss_pred             cCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccchhhH--------------HHHHHHHHhCCC
Confidence            11122345899999999752110                 01233222399999              999999766432


Q ss_pred             hhHHH---HHHHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCC--
Q psy7309         145 KTLEE---LKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDP--  219 (454)
Q Consensus       145 ~~~~~---l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP--  219 (454)
                      .....   ....+..     ... .......+ ......++..           ...++...+|+     .+||..+|  
T Consensus       431 ~p~~~~~~f~~~~~~-----~~~-~~~~~r~~-~~~~~~~~~~-----------d~~s~~~~dLi-----~~LL~~~~~~  487 (507)
T PLN03224        431 RPVANIRLFNTELRQ-----YDN-DLNRWRMY-KGQKYDFSLL-----------DRNKEAGWDLA-----CKLITKRDQA  487 (507)
T ss_pred             CCccchhhhhhHHhh-----ccc-hHHHHHhh-cccCCCcccc-----------cccChHHHHHH-----HHHhccCCCC
Confidence            11111   1000000     000 00000111 1122222211           23457888999     99999876  


Q ss_pred             -CCCCChhhhhcCcccc
Q psy7309         220 -SKRPSSEQNLCQPISL  235 (454)
Q Consensus       220 -~~Rpta~e~l~hp~f~  235 (454)
                       .+|+|++|+|.||||.
T Consensus       488 ~~~RlSa~eaL~Hp~f~  504 (507)
T PLN03224        488 NRGRLSVGQALSHRFFL  504 (507)
T ss_pred             cccCCCHHHHhCCCCcC
Confidence             7899999999999996

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.87  E-value=5.4e-23  Score=198.90  Aligned_cols=175  Identities=27%  Similarity=0.329  Sum_probs=118.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.............  ..+.   ..........
T Consensus       102 ~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~  176 (280)
T cd05581         102 KCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNK--GDAT---NIDSQIEKNR  176 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCC--CCCc---cccccccccc
Confidence            4688999999999999999999999999999999999999999999998653211100000  0000   0000000112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||+..   ...++.++  |+||+              |++++++++|+.               |+
T Consensus       177 ~~~~~~~~~~~~~~Pe~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~g~~---------------p~  222 (280)
T cd05581         177 RRFASFVGTAEYVSPELLN---EKPAGKSS--DLWAL--------------GCIIYQMLTGKP---------------PF  222 (280)
T ss_pred             cccccccCCccccCHHHhC---CCCCChhh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            3345567899999999987   45577777  99999              999999776554               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh----hhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS----EQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta----~e~l~hp~f  234 (454)
                      ........+..+. .....++...             ++...+++     .+||+.||.+|||+    +|+++||||
T Consensus       223 ~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~li-----~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         223 RGSNEYLTFQKIL-KLEYSFPPNF-------------PPDAKDLI-----EKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             CCccHHHHHHHHH-hcCCCCCCcc-------------CHHHHHHH-----HHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence            2211111222221 1122223221             25566787     99999999999999    999999997

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.87  E-value=5.9e-23  Score=197.39  Aligned_cols=153  Identities=26%  Similarity=0.350  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||.|||+.||+||||||+||+++.++.+||+|||++.....                        ...
T Consensus       102 ~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~------------------------~~~  157 (260)
T cd05069         102 PQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIED------------------------NEY  157 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccC------------------------Ccc
Confidence            35788999999999999999999999999999999999999999999875421                        001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  |+||+              |+++|++++ |.+               |
T Consensus       158 ~~~~~~~~~~~y~~Pe~~~---~~~~~~~~--Di~sl--------------G~~l~el~t~g~~---------------p  203 (260)
T cd05069         158 TARQGAKFPIKWTAPEAAL---YGRFTIKS--DVWSF--------------GILLTELVTKGRV---------------P  203 (260)
T ss_pred             cccCCCccchhhCCHHHhc---cCCcChHH--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1112234677899999987   56678888  99999              999999775 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             ......+++     ++||..||.+|||++++++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~i~~  255 (260)
T cd05069         204 YPGMVNREVLEQVERGYRMPCPQG-------------CPESLHELM-----KLCWKKDPDERPTFEYIQS  255 (260)
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCcc-------------cCHHHHHHH-----HHHccCCcccCcCHHHHHH
Confidence            222222222222322222222222             125567788     9999999999999998764

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.87  E-value=7.7e-23  Score=196.64  Aligned_cols=155  Identities=17%  Similarity=0.184  Sum_probs=112.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.|++.||+|||++|++||||||+|||++.++.+||+|||++.......                      ...
T Consensus        95 ~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~----------------------~~~  152 (257)
T cd05115          95 SNVVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADD----------------------SYY  152 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCc----------------------cce
Confidence            4678999999999999999999999999999999999999999999987542110                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+...++..|+|||++.   ...++.++  ||||+              |+++||+++ +..               |
T Consensus       153 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~g~~---------------p  198 (257)
T cd05115         153 KARSAGKWPLKWYAPECIN---FRKFSSRS--DVWSY--------------GITMWEAFSYGQK---------------P  198 (257)
T ss_pred             eccCCCCCCcccCCHHHHc---cCCCCchh--hHHHH--------------HHHHHHHhcCCCC---------------C
Confidence            1122233467899999987   56678888  99999              999999654 432               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             ..++..+++     .+||..||++||++.++.+
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         199 YKKMKGPEVMSFIEQGKRLDCPAE-------------CPPEMYALM-----KDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             cCcCCHHHHHHHHHCCCCCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            333333333333333333333332             126677888     9999999999999998864

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.87  E-value=7.5e-23  Score=204.48  Aligned_cols=154  Identities=22%  Similarity=0.304  Sum_probs=111.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+..++.|++.||+|||++||+||||||+|||++.++.+||+|||+++.....                       ....
T Consensus       135 ~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~-----------------------~~~~  191 (334)
T cd05100         135 DLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNI-----------------------DYYK  191 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCcccceecccc-----------------------cccc
Confidence            46778999999999999999999999999999999999999999998754210                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   +..++.++  ||||+              |+++|||++ +..               |+
T Consensus       192 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p~  237 (334)
T cd05100         192 KTTNGRLPVKWMAPEALF---DRVYTHQS--DVWSF--------------GVLLWEIFTLGGS---------------PY  237 (334)
T ss_pred             cccCCCcCceEcCHHHhc---cCCcCchh--hhHHH--------------HHHHHHHHhcCCC---------------CC
Confidence            122234467899999997   66788888  99999              999999765 322               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+.+..+....+........+..             ......+++     .+||+.+|.+|||+.|++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~~p~~Rps~~ell~~  289 (334)
T cd05100         238 PGIPVEELFKLLKEGHRMDKPAN-------------CTHELYMIM-----RECWHAVPSQRPTFKQLVED  289 (334)
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHcccChhhCcCHHHHHHH
Confidence            33333333333332222222222             124566777     99999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.87  E-value=9.6e-23  Score=195.91  Aligned_cols=153  Identities=22%  Similarity=0.293  Sum_probs=109.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||.|||++||+||||||+||+++.++.+||+|||++......                        ..
T Consensus       103 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~------------------------~~  158 (261)
T cd05068         103 PQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKED------------------------IY  158 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCC------------------------cc
Confidence            467899999999999999999999999999999999999999999999865310                        00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  |+||+              |++++|+++ ++.               |
T Consensus       159 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~t~g~~---------------p  204 (261)
T cd05068         159 EAREGAKFPIKWTAPEAAL---YNRFSIKS--DVWSF--------------GILLTEIVTYGRM---------------P  204 (261)
T ss_pred             cccCCCcCceeccCccccc---cCCCCchh--hHHHH--------------HHHHHHHHhcCCC---------------C
Confidence            1111223346899999987   56788888  99999              999999775 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             .+....+++     .+||+.||.+||++.++++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         205 YPGMTNAEVLQQVDQGYRMPCPPG-------------CPKELYDIM-----LDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCc-------------CCHHHHHHH-----HHHhhcCcccCCCHHHHHH
Confidence            323222233333322222212211             125566777     9999999999999998764

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.87  E-value=6.8e-23  Score=198.23  Aligned_cols=151  Identities=22%  Similarity=0.243  Sum_probs=107.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+|||++.++.+||+|||++.....                          .
T Consensus       112 ~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~--------------------------~  165 (270)
T cd05047         112 QQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV--------------------------Y  165 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCccccch--------------------------h
Confidence            35688999999999999999999999999999999999999999999853211                          0


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........+..|+|||++.   ...++.++  |+||+              |++++|+++ +..               |
T Consensus       166 ~~~~~~~~~~~y~apE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p  211 (270)
T cd05047         166 VKKTMGRLPVRWMAIESLN---YSVYTTNS--DVWSY--------------GVLLWEIVSLGGT---------------P  211 (270)
T ss_pred             hhccCCCCccccCChHHHc---cCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            0111123356799999987   56788888  99999              999999764 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             .+....+++     .+||..||.+|||++++++
T Consensus       212 f~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         212 YCGMTCAELYEKLPQGYRLEKPLN-------------CDDEVYDLM-----RQCWREKPYERPSFAQILV  263 (270)
T ss_pred             ccccCHHHHHHHHhCCCCCCCCCc-------------CCHHHHHHH-----HHHcccChhhCCCHHHHHH
Confidence            222222222222222212111211             124556777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.87  E-value=1.1e-22  Score=196.02  Aligned_cols=153  Identities=23%  Similarity=0.306  Sum_probs=109.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||+.|++||||||+||+++.++.+||+|||.+......                        ..
T Consensus       102 ~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~------------------------~~  157 (262)
T cd05071         102 PQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN------------------------EY  157 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeecccc------------------------cc
Confidence            467889999999999999999999999999999999999999999999754321                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  |+||+              |+++|++++ +.+               |
T Consensus       158 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Dvwsl--------------G~~l~ellt~g~~---------------p  203 (262)
T cd05071         158 TARQGAKFPIKWTAPEAAL---YGRFTIKS--DVWSF--------------GILLTELTTKGRV---------------P  203 (262)
T ss_pred             ccccCCcccceecCHhHhc---cCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1112335677899999987   56788888  99999              999999766 432               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             ......+++     .+||+.||++|||+.++++
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         204 YPGMVNREVLDQVERGYRMPCPPE-------------CPESLHDLM-----CQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             CCCCChHHHHHHHhcCCCCCCccc-------------cCHHHHHHH-----HHHccCCcccCCCHHHHHH
Confidence            222222222222222211111111             124556777     9999999999999998764

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.87  E-value=9.1e-23  Score=199.58  Aligned_cols=159  Identities=16%  Similarity=0.156  Sum_probs=107.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++......                       ...
T Consensus       130 ~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~-----------------------~~~  186 (296)
T cd05051         130 STLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSS-----------------------DYY  186 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCccccccchhceeecCCCceEEccccceeecccC-----------------------cce
Confidence            357899999999999999999999999999999999999999999998754210                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......+|+.|+|||++.   ...++.++  ||||+              ||++||+++...             ..|+
T Consensus       187 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~~l~el~~~~~-------------~~p~  234 (296)
T cd05051         187 RVQGRAPLPIRWMAWESVL---LGKFTTKS--DVWAF--------------GVTLWEILTLCR-------------EQPY  234 (296)
T ss_pred             eecCcCCCCceecCHHHhh---cCCCCccc--hhhhh--------------HHHHHHHHhcCC-------------CCCC
Confidence            1223445678999999987   56788888  99999              999999654110             0122


Q ss_pred             CCchhhhhhhhhccC----CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKS----PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~----~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ........+......    .........          ...+.+..+++     .+||+.||.+|||+.|+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~li-----~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         235 EHLTDQQVIENAGHFFRDDGRQIYLPRP----------PNCPKDIYELM-----LECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             CCcChHHHHHHHHhccccccccccCCCc----------cCCCHHHHHHH-----HHHhccChhcCCCHHHHHH
Confidence            221111111111100    000000000          11225566777     9999999999999998864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.87  E-value=1.7e-22  Score=192.76  Aligned_cols=154  Identities=30%  Similarity=0.450  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||+.|++|+||||.||+++.++.+||+|||++.....                          .
T Consensus       103 ~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~--------------------------~  156 (256)
T cd08530         103 QEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKK--------------------------N  156 (256)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhcc--------------------------C
Confidence            35789999999999999999999999999999999999999999999975532                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       ......|++.|+|||.+.   +..++.++  |+||+              |++++++++++.               |+
T Consensus       157 -~~~~~~~~~~~~~Pe~~~---~~~~~~~~--D~~sl--------------G~~~~~l~~g~~---------------p~  201 (256)
T cd08530         157 -MAKTQIGTPHYMAPEVWK---GRPYSYKS--DIWSL--------------GCLLYEMATFAP---------------PF  201 (256)
T ss_pred             -CcccccCCccccCHHHHC---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence             222346788999999987   56778888  99999              999999766553               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...........+........+..             .+.+..+++     .+||..+|++|||+.|+++||+.
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         202 EARSMQDLRYKVQRGKYPPIPPI-------------YSQDLQNFI-----RSMLQVKPKLRPNCDKILASPAV  256 (256)
T ss_pred             CCCCHHHHHHHHhcCCCCCCchh-------------hCHHHHHHH-----HHHcCCCcccCCCHHHHhcCCCC
Confidence            22222222222222221222211             125667788     99999999999999999999973

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.87  E-value=1.1e-22  Score=195.18  Aligned_cols=152  Identities=22%  Similarity=0.271  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++||+|+||||+||+++.++.+||+|||.+......                         .
T Consensus       104 ~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~-------------------------~  158 (261)
T cd05148         104 ASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKED-------------------------V  158 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCc-------------------------c
Confidence            467889999999999999999999999999999999999999999999754321                         1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   ...++.++  |+||+              |++++++++ ++.               |
T Consensus       159 ~~~~~~~~~~~~~~PE~~~---~~~~~~~~--Diwsl--------------G~~l~~l~~~g~~---------------p  204 (261)
T cd05148         159 YLSSDKKIPYKWTAPEAAS---HGTFSTKS--DVWSF--------------GILLYEMFTYGQV---------------P  204 (261)
T ss_pred             ccccCCCCceEecCHHHHc---cCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1112344677899999987   56778888  99999              999999765 433               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +........+..+........+..             .++...+++     .+||+.||.+|||+.++++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         205 YPGMNNHEVYDQITAGYRMPCPAK-------------CPQEIYKIM-----LECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             CCcCCHHHHHHHHHhCCcCCCCCC-------------CCHHHHHHH-----HHHcCCCchhCcCHHHHHH
Confidence            222222333333332222222221             225666777     9999999999999998764

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.87  E-value=7.1e-23  Score=200.17  Aligned_cols=154  Identities=20%  Similarity=0.265  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       127 ~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~-----------------------~~~  183 (290)
T cd05045         127 GDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEE-----------------------DSY  183 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEEcCCCcEEeccccccccccCc-----------------------cch
Confidence            356899999999999999999999999999999999999999999998754211                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  ||||+              |++++||++ |..               |
T Consensus       184 ~~~~~~~~~~~y~apE~~~---~~~~~~~~--Di~sl--------------G~~l~el~t~g~~---------------p  229 (290)
T cd05045         184 VKRSKGRIPVKWMAIESLF---DHIYTTQS--DVWSF--------------GVLLWEIVTLGGN---------------P  229 (290)
T ss_pred             hcccCCCCCccccCHHHHc---cCCcchHh--HHHHH--------------HHHHHHHHhcCCC---------------C
Confidence            1122234567899999987   56688888  99999              999999765 432               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             .+....+++     .+||+.||++|||+.|+++
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         230 YPGIAPERLFNLLKTGYRMERPEN-------------CSEEMYNLM-----LTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             CCCCCHHHHHHHHhCCCCCCCCCC-------------CCHHHHHHH-----HHHccCCcccCCCHHHHHH
Confidence            222222222222222211222221             125566777     9999999999999998874

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.87  E-value=7.5e-23  Score=199.18  Aligned_cols=166  Identities=22%  Similarity=0.313  Sum_probs=108.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       107 ~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~----------------------~~~  164 (283)
T cd05080         107 AQLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGH----------------------EYY  164 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcc----------------------hhh
Confidence            4678999999999999999999999999999999999999999999987543210                      000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhH---HHHHHHhhhcC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTL---EELKHNIRREN  158 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~---~~l~~~i~~~~  158 (454)
                      .......++..|+|||.+.   +..++.++  ||||+              |++++||++|..+..   ..+...+.   
T Consensus       165 ~~~~~~~~~~~~~~PE~~~---~~~~~~~~--Di~sl--------------G~~l~el~tg~~p~~~~~~~~~~~~~---  222 (283)
T cd05080         165 RVREDGDSPVFWYAVECLK---ENKFSYAS--DVWSF--------------GVTLYELLTHCDSKQSPPKKFEEMIG---  222 (283)
T ss_pred             ccCCCCCCCceeeCHhHhc---ccCCCccc--ccHHH--------------HHHHHHHHhCCCCCCCCcchhhhhhc---
Confidence            1112234567799999987   56678888  99999              999999776542110   00100000   


Q ss_pred             CCCCC-chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         159 GPSTG-SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       159 ~p~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                       +..+ ..................+.             .......+++     ..||+.||++|||+++++.
T Consensus       223 -~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~li-----~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         223 -PKQGQMTVVRLIELLERGMRLPCPK-------------NCPQEVYILM-----KNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             -ccccccchhhhhhhhhcCCCCCCCC-------------CCCHHHHHHH-----HHHhccChhhCCCHHHHHH
Confidence             0000 00001111111111111111             1225667777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.87  E-value=9.6e-23  Score=194.74  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=107.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++......                       ...
T Consensus        94 ~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~-----------------------~~~  150 (252)
T cd05084          94 KELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDG-----------------------VYA  150 (252)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccc-----------------------ccc
Confidence            357889999999999999999999999999999999999999999998743210                       000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  |+||+              |+++||+++ +.++               
T Consensus       151 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~e~~~~~~~p---------------  196 (252)
T cd05084         151 STGGMKQIPVKWTAPEALN---YGRYSSES--DVWSF--------------GILLWEAFSLGAVP---------------  196 (252)
T ss_pred             ccCCCCCCceeecCchhhc---CCCCChHH--HHHHH--------------HHHHHHHHhCCCCC---------------
Confidence            0011122356799999987   56678888  99999              999999764 3331               


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.||++|||+.++++
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         197 YANLSNQQTREAIEQGVRLPCPEL-------------CPDAVYRLM-----ERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             ccccCHHHHHHHHHcCCCCCCccc-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            111111122222222222222222             225667777     9999999999999998864

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG1167|consensus

Probab=99.87  E-value=1.9e-22  Score=197.34  Aligned_cols=213  Identities=22%  Similarity=0.283  Sum_probs=123.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-CCeEEecccchhhhhhhcCCCccc----------cccCcc--
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLAR----------ELTGYI--   68 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-~~vKL~DFGla~~~~~~~~~~~~~----------~~~~~~--   68 (454)
                      .+++.+++.++.||+++|.+|||||||||.|+|.+.. +.-.|+|||+|...........+.          .+....  
T Consensus       132 ~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~  211 (418)
T KOG1167|consen  132 AEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQ  211 (418)
T ss_pred             HHHHHHHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCccccc
Confidence            4788999999999999999999999999999999864 567899999998432211111111          111110  


Q ss_pred             -----CCCCCCCC--cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC
Q psy7309          69 -----LPPIDSTA--FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK  141 (454)
Q Consensus        69 -----~~~~~~~~--~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~  141 (454)
                           .++-.-..  ............||++|+|||++..  ....++++  ||||.              |+|+..+++
T Consensus       212 ~~~~~~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k--~~~Qttai--Diws~--------------GVI~Lslls  273 (418)
T KOG1167|consen  212 SVATASKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFR--CPRQTTAI--DIWSA--------------GVILLSLLS  273 (418)
T ss_pred             ccccccCCCCceeccCCCccceecccCCCCCCCchHHHhh--ccCcCCcc--ceeec--------------cceeehhhc
Confidence                 00100000  1122344557899999999999983  45667788  99999              999998766


Q ss_pred             Cch------hhHHHHHHHhhhcCCCCCCchhhhh---hhh---hccCCCCCCCcccccccccccc-c-----------cc
Q psy7309         142 DRP------KTLEELKHNIRRENGPSTGSNVQKS---LQK---FQKSPPSVYREWRSSFEWSTVR-N-----------NI  197 (454)
Q Consensus       142 ~~~------~~~~~l~~~i~~~~~p~~~~~~~~~---~~~---~~~~~~~~~p~~~~~~~~~~~~-~-----------~~  197 (454)
                      .+.      .....+.++....+.    ...++.   ..+   +.+...+..++..  +.|+++. .           ..
T Consensus       274 ~~~PFf~a~dd~~al~ei~tifG~----~~mrk~A~l~g~~~l~~ksn~~~~~e~~--~~f~s~~~~~~~~~~q~n~~~~  347 (418)
T KOG1167|consen  274 RRYPFFKAKDDADALAEIATIFGS----AEMRKCAALPGRILLWQKSNIPTIPELR--VNFETLHIESIYKSRQPNTERE  347 (418)
T ss_pred             cccccccCccccchHHHHHHHhCh----HHHHHHhhcCCceeeeccccccccHHHH--hchhccChhhcccccccceeec
Confidence            443      222223222221111    111110   000   0000011111110  1122220 0           01


Q ss_pred             cccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         198 KSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       198 ~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ...+....+.++++.+||+.||.+|.||+++|+||||.+..
T Consensus       348 ~~~d~~~~~~~dlLdk~le~np~kRitAEeALkHpFF~~~~  388 (418)
T KOG1167|consen  348 IGSDVFPALLLDLLDKCLELNPQKRITAEDALKHPFFDEAD  388 (418)
T ss_pred             cccccccHHHHHHHHHHccCChhhcccHHHHhcCcCCcchh
Confidence            11222233444555999999999999999999999999543

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.87  E-value=1.2e-22  Score=198.48  Aligned_cols=168  Identities=28%  Similarity=0.414  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||.|||+.|++|+||+|+||+++.++.++|+|||++.....                           .
T Consensus       106 ~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~---------------------------~  158 (287)
T cd06621         106 VLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVN---------------------------S  158 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccccc---------------------------c
Confidence            4678999999999999999999999999999999999999999999864321                           1


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......++..|+|||.+.   +..++.++  |+||+              |+++|++++|..+....-        .+  
T Consensus       159 ~~~~~~~~~~y~~pE~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~p~~~~~--------~~--  209 (287)
T cd06621         159 LAGTFTGTSFYMAPERIQ---GKPYSITS--DVWSL--------------GLTLLEVAQNRFPFPPEG--------EP--  209 (287)
T ss_pred             ccccccCCccccCHHHhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCCCCCccc--------CC--
Confidence            112345788999999987   66788888  99999              999999777653211000        00  


Q ss_pred             CchhhhhhhhhccCCCCCCCcccc-ccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRS-SFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      .....+....+.......++.... ...|        ++...+++     .+||..||.+|||+.|++.||||.....
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~li-----~~~l~~~p~~Rpt~~eil~~~~~~~~~~  274 (287)
T cd06621         210 PLGPIELLSYIVNMPNPELKDEPGNGIKW--------SEEFKDFI-----KQCLEKDPTRRPTPWDMLEHPWIKAQMK  274 (287)
T ss_pred             CCChHHHHHHHhcCCchhhccCCCCCCch--------HHHHHHHH-----HHHcCCCcccCCCHHHHHhCcccccccc
Confidence            000111111111111111111110 0011        24566777     9999999999999999999999975443

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.87  E-value=1.2e-22  Score=198.22  Aligned_cols=165  Identities=25%  Similarity=0.355  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||+.|++|+||||.||+++.++.++|+|||++.....                        ...
T Consensus       105 ~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~------------------------~~~  160 (288)
T cd05583         105 SEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLA------------------------EEE  160 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECcccccccc------------------------ccc
Confidence            35778899999999999999999999999999999999999999999875421                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+... ....+.++  |+||+              |++++++++|..+....         +  
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~~~--Dv~sl--------------G~il~el~tg~~p~~~~---------~--  212 (288)
T cd05583         161 ERAYSFCGTIEYMAPEVIRGG-SGGHDKAV--DWWSL--------------GVLTFELLTGASPFTVD---------G--  212 (288)
T ss_pred             cccccccCCccccCHHHhcCC-CCCCcchh--hhHHH--------------HHHHHHHHhCCCCcccC---------c--
Confidence            112235688999999998621 12356677  99999              99999977755321000         0  


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC---hhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS---SEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt---a~e~l~hp~f~~~  237 (454)
                      ...........+. ......+..             .+..+.+++     .+||+.||++|||   +.++|+||||...
T Consensus       213 ~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~R~t~~~~~~~l~~~~~~~~  272 (288)
T cd05583         213 EQNSQSEISRRIL-KSKPPFPKT-------------MSAEARDFI-----QKLLEKDPKKRLGANGADEIKNHPFFQGI  272 (288)
T ss_pred             ccchHHHHHHHHH-ccCCCCCcc-------------cCHHHHHHH-----HHHhcCCHhhccCcchHHHHhcCcccccC
Confidence            0000111111111 111122222             125667888     9999999999999   5677999999754

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.87  E-value=1.3e-22  Score=194.64  Aligned_cols=155  Identities=17%  Similarity=0.202  Sum_probs=109.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||.+|++|+||||+|||++.++.+||+|||+++......                      ...
T Consensus        95 ~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~----------------------~~~  152 (257)
T cd05060          95 SDLKELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGS----------------------DYY  152 (257)
T ss_pred             HHHHHHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCC----------------------ccc
Confidence            4678999999999999999999999999999999999999999999988543210                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   ...++.++  ||||+              |+++|++++ +.+               |
T Consensus       153 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~~~~~g~~---------------p  198 (257)
T cd05060         153 RATTAGRWPLKWYAPECIN---YGKFSSKS--DVWSY--------------GVTLWEAFSYGAK---------------P  198 (257)
T ss_pred             ccccCccccccccCHHHhc---CCCCCccc--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1112223456899999987   56688888  99999              999999764 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.||++|||+.++++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         199 YGEMKGAEVIAMLESGERLPRPEE-------------CPQEIYSIM-----LSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             cccCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHhcCChhhCcCHHHHHH
Confidence            222222222222222222222222             125566788     9999999999999998874

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.87  E-value=1.3e-22  Score=198.30  Aligned_cols=166  Identities=24%  Similarity=0.319  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||.|||+.|++||||||+|||++.++.+||+|||++.....                        ...
T Consensus       105 ~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~------------------------~~~  160 (290)
T cd05613         105 QEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHE------------------------DEV  160 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceeccc------------------------ccc
Confidence            35778889999999999999999999999999999999999999999875421                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+... ...++.++  |+||+              |+++|++++|..+...           ..
T Consensus       161 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~~~--Dv~sl--------------G~~l~~ll~g~~p~~~-----------~~  212 (290)
T cd05613         161 ERAYSFCGTIEYMAPDIVRGG-DGGHDKAV--DWWSM--------------GVLMYELLTGASPFTV-----------DG  212 (290)
T ss_pred             cccccccCCcccCChhhccCC-CCCCCccc--cHHHH--------------HHHHHHHhcCCCCCCc-----------CC
Confidence            122345789999999998621 23466777  99999              9999997776532100           00


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      ...........+.. ....+|..             ..+...+++     .+||+.||++||     ++++++.||||..
T Consensus       213 ~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~ll-----~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~  273 (290)
T cd05613         213 EKNSQAEISRRILK-SEPPYPQE-------------MSALAKDII-----QRLLMKDPKKRLGCGPSDADEIKKHPFFQK  273 (290)
T ss_pred             ccccHHHHHHHhhc-cCCCCCcc-------------CCHHHHHHH-----HHHhcCCHHHhcCCCCCCHHHHHcCccccc
Confidence            00011111112211 11122222             125566777     999999999997     8999999999986


Q ss_pred             CC
Q psy7309         237 GS  238 (454)
Q Consensus       237 ~~  238 (454)
                      ..
T Consensus       274 ~~  275 (290)
T cd05613         274 IN  275 (290)
T ss_pred             CC
Confidence            43

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.87  E-value=8.1e-23  Score=199.19  Aligned_cols=170  Identities=22%  Similarity=0.349  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||.|||+ +|++||||||+||+++.++.++|+|||++.....                          
T Consensus       103 ~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~--------------------------  156 (284)
T cd06620         103 EILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELIN--------------------------  156 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhh--------------------------
Confidence            3578899999999999997 6999999999999999999999999999864321                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                       ......+||..|+|||++.   +..++.++  |+||+              ||+++++++|+.+........    ..+
T Consensus       157 -~~~~~~~~~~~~~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~tg~~p~~~~~~~~----~~~  212 (284)
T cd06620         157 -SIADTFVGTSTYMSPERIQ---GGKYTVKS--DVWSL--------------GISIIELALGKFPFAFSNIDD----DGQ  212 (284)
T ss_pred             -hccCccccCcccCCHHHHc---cCCCCccc--hHHHH--------------HHHHHHHHhCCCCCcccchhh----hhh
Confidence             1112357899999999987   56778888  99999              999999776554221100000    000


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ............+.......++..            .......+|+     .+||+.||.+|||++|+++|+||.+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~li-----~~~l~~dp~~Rpt~~e~~~~~~~~~~~  273 (284)
T cd06620         213 DDPMGILDLLQQIVQEPPPRLPSS------------DFPEDLRDFV-----DACLLKDPTERPTPQQLCAMPPFIQAL  273 (284)
T ss_pred             hhhhHHHHHHHHHhhccCCCCCch------------hcCHHHHHHH-----HHHhcCCcccCcCHHHHhcCccccccc
Confidence            000011112222221222222211            0124556777     999999999999999999999997654

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.87  E-value=1.6e-22  Score=192.35  Aligned_cols=158  Identities=29%  Similarity=0.458  Sum_probs=115.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.|++|+||+|+||+++.++.+||+|||.+.......                       ..
T Consensus       101 ~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~-----------------------~~  157 (260)
T cd06606         101 PVIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIE-----------------------TG  157 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEeccccc-----------------------cc
Confidence            4678999999999999999999999999999999999999999999988553210                       00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......++..|+|||.+.   ...++.++  |+||+              |++++++++|..+               +
T Consensus       158 ~~~~~~~~~~~y~~pE~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~p---------------~  203 (260)
T cd06606         158 EGTGSVRGTPYWMAPEVIR---GEEYGRAA--DIWSL--------------GCTVIEMATGKPP---------------W  203 (260)
T ss_pred             ccccCCCCCccccCHhhhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1234467889999999987   45577788  99999              9999997665431               1


Q ss_pred             CCch-hhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSN-VQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~-~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .... .......+.. .....+|..             .+....+++     .+||+.||.+|||+.|+++||||
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~~i-----~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         204 SELGNPMAALYKIGSSGEPPEIPEH-------------LSEEAKDFL-----RKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             CCCCchHHHHHhccccCCCcCCCcc-------------cCHHHHHHH-----HHhCcCChhhCCCHHHHhhCCCC
Confidence            1111 1111111110 111222222             136677888     99999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.87  E-value=2.3e-22  Score=200.77  Aligned_cols=176  Identities=30%  Similarity=0.357  Sum_probs=117.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|+++||+|||++||+||||||.||+++.++.+||+|||++....                            .
T Consensus       109 ~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~----------------------------~  160 (328)
T cd07856         109 FIQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQD----------------------------P  160 (328)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccC----------------------------C
Confidence            467889999999999999999999999999999999999999999987431                            1


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh----HHHHHHHhhhcC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT----LEELKHNIRREN  158 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~----~~~l~~~i~~~~  158 (454)
                      ......++..|+|||.+..  ...++.++  |+||+              |++++++++|.+..    .......+....
T Consensus       161 ~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Dv~sl--------------G~il~el~tg~~~f~~~~~~~~~~~~~~~~  222 (328)
T cd07856         161 QMTGYVSTRYYRAPEIMLT--WQKYDVEV--DIWSA--------------GCIFAEMLEGKPLFPGKDHVNQFSIITDLL  222 (328)
T ss_pred             CcCCCcccccccCceeeec--cCCcCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHHh
Confidence            1233567889999999761  25677788  99999              99999977765421    001111111111


Q ss_pred             CCCCCchh--------hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         159 GPSTGSNV--------QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       159 ~p~~~~~~--------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.......        .+....+......         .++... ...+....++|     .+||+.||++|||+++++.
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~~li-----~~~l~~~P~~R~t~~ell~  287 (328)
T cd07856         223 GTPPDDVINTICSENTLRFVQSLPKREPV---------PFSEKF-KNADPSAIDLL-----EKMLVFDPQKRISAAEALA  287 (328)
T ss_pred             CCCCHHHHHhccchhhHHHHhhccccCCC---------cHHHHc-CCCCHHHHHHH-----HHHcCCChhhCCCHHHHhc
Confidence            11111100        0011111101110         111111 11236677888     9999999999999999999


Q ss_pred             CcccccCCC
Q psy7309         231 QPISLEGSS  239 (454)
Q Consensus       231 hp~f~~~~~  239 (454)
                      ||||.....
T Consensus       288 ~~~~~~~~~  296 (328)
T cd07856         288 HPYLAPYHD  296 (328)
T ss_pred             CCccccccC
Confidence            999976554

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.87  E-value=2e-22  Score=194.25  Aligned_cols=155  Identities=21%  Similarity=0.257  Sum_probs=110.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.|++.||+|||++||+|+||||+|||++.++.+||+|||++......                       ...
T Consensus       106 ~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~-----------------------~~~  162 (266)
T cd05033         106 GQLVGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDS-----------------------EAT  162 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhccccc-----------------------ccc
Confidence            467899999999999999999999999999999999999999999999865310                       000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  |+||+              |+++|++++ |..               |
T Consensus       163 ~~~~~~~~~~~y~~Pe~~~---~~~~~~~~--Dv~sl--------------G~~l~~l~~~g~~---------------p  208 (266)
T cd05033         163 YTTKGGKIPIRWTAPEAIA---YRKFTSAS--DVWSF--------------GIVMWEVMSYGER---------------P  208 (266)
T ss_pred             eeccCCCCCccccChhhhc---cCCCcccc--chHHH--------------HHHHHHHHccCCC---------------C
Confidence            0111234567899999987   56788888  99999              999999654 332               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             .++...+++     .+||+.||++|||++|++++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         209 YWDMSNQDVIKAVEDGYRLPPPMD-------------CPSALYQLM-----LDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCCcccCcCHHHHHHH
Confidence            222222222333322212212221             125566777     99999999999999988763

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>KOG0608|consensus

Probab=99.87  E-value=7.8e-23  Score=207.46  Aligned_cols=184  Identities=27%  Similarity=0.355  Sum_probs=118.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCcccccc----C-ccCCC------
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT----G-YILPP------   71 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~----~-~~~~~------   71 (454)
                      -++.++.++.+|+++.|..|+|||||||+|||||.+|++||.||||++-+.=.+....-.++.    + +..++      
T Consensus       730 LARFYIAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~  809 (1034)
T KOG0608|consen  730 LARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADIS  809 (1034)
T ss_pred             HHHHHHHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhcccc
Confidence            478899999999999999999999999999999999999999999997432111100000000    0 00000      


Q ss_pred             -----CCCCC-cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh
Q psy7309          72 -----IDSTA-FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK  145 (454)
Q Consensus        72 -----~~~~~-~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~  145 (454)
                           +...+ ...........+||+.|+|||++.   ..+|+..|  |+||.              |+|+|||+.|++.
T Consensus       810 ~~lkvL~~ra~~~h~r~~ahslvgt~nyiapevl~---r~g~~q~c--dwws~--------------gvil~em~~g~~p  870 (1034)
T KOG0608|consen  810 KCLKVLERRAMRQHQRILAHSLVGTPNYIAPEVLA---RTGYTQLC--DWWSV--------------GVILYEMLVGQPP  870 (1034)
T ss_pred             ccchHHHHHHHhhhhhhhhhhhcCCCcccChHHhc---ccCccccc--hhhHh--------------hHHHHHHhhCCCC
Confidence                 00000 000111223579999999999999   78999999  99999              9999998877764


Q ss_pred             hHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-
Q psy7309         146 TLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-  224 (454)
Q Consensus       146 ~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-  224 (454)
                      .+++-         |  +. .+..+..|.+.-  .++..           ...+.++.++|     .+ |..++++|.. 
T Consensus       871 f~~~t---------p--~~-tq~kv~nw~~~l--~~~~~-----------~~ls~e~~~li-----~k-Lc~sad~RLGk  919 (1034)
T KOG0608|consen  871 FLADT---------P--GE-TQYKVINWRNFL--HIPYQ-----------GNLSKEALDLI-----QK-LCCSADSRLGK  919 (1034)
T ss_pred             ccCCC---------C--Cc-ceeeeeehhhcc--ccccc-----------cccCHHHHHHH-----HH-HhcChhhhhcc
Confidence            33211         0  00 000111111111  11111           22347777887     55 5578889985 


Q ss_pred             --hhhhhcCccccc
Q psy7309         225 --SEQNLCQPISLE  236 (454)
Q Consensus       225 --a~e~l~hp~f~~  236 (454)
                        ++|+..||||+.
T Consensus       920 ng~d~vKaHpfFkg  933 (1034)
T KOG0608|consen  920 NGADQVKAHPFFKG  933 (1034)
T ss_pred             cchhhhhcCccccc
Confidence              788999999984

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.86  E-value=2.1e-22  Score=194.32  Aligned_cols=148  Identities=18%  Similarity=0.272  Sum_probs=103.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC-------eEEecccchhhhhhhcCCCccccccCccCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-------VKIGDFGLATNILQKHAGPLARELTGYILPPIDS   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~-------vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~   74 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.       +|++|||++....                     
T Consensus       105 ~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~---------------------  163 (262)
T cd05077         105 PWKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVL---------------------  163 (262)
T ss_pred             HHHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCcccc---------------------
Confidence            357889999999999999999999999999999987664       8999999886431                     


Q ss_pred             CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeec-CCchhhHHHHHHH
Q psy7309          75 TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVY-KDRPKTLEELKHN  153 (454)
Q Consensus        75 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~-~~~~~~~~~l~~~  153 (454)
                              ......||..|+|||.+..  +..++.++  ||||+              ||++||++ .+..+        
T Consensus       164 --------~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~~l~el~~~~~~p--------  209 (262)
T cd05077         164 --------SRQECVERIPWIAPECVED--SKNLSIAA--DKWSF--------------GTTLWEICYNGEIP--------  209 (262)
T ss_pred             --------CcccccccccccChhhhcC--CCCCCchh--HHHHH--------------HHHHHHHHhCCCCC--------
Confidence                    1123467889999998752  35677788  99999              99999964 44331        


Q ss_pred             hhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         154 IRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       154 i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                             +........ ..+.... ......             ......+++     .+||+.||.+||++.+++.+
T Consensus       210 -------~~~~~~~~~-~~~~~~~-~~~~~~-------------~~~~~~~li-----~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         210 -------LKDKTLAEK-ERFYEGQ-CMLVTP-------------SCKELADLM-----THCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             -------CCCcchhHH-HHHHhcC-ccCCCC-------------ChHHHHHHH-----HHHcCCChhhCcCHHHHHHh
Confidence                   111111111 1111111 111000             114456777     99999999999999988864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.86  E-value=1.8e-22  Score=193.96  Aligned_cols=153  Identities=25%  Similarity=0.345  Sum_probs=110.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.|++||||||+||+++.++.++|+|||++.....                        ...
T Consensus       102 ~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~------------------------~~~  157 (260)
T cd05067         102 NKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIED------------------------NEY  157 (260)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCC------------------------CCc
Confidence            35778999999999999999999999999999999999999999999875421                        001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   ...++.++  ||||+              |++++|+++ |++               |
T Consensus       158 ~~~~~~~~~~~y~~pe~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~g~~---------------p  203 (260)
T cd05067         158 TAREGAKFPIKWTAPEAIN---YGTFTIKS--DVWSF--------------GILLTEIVTYGRI---------------P  203 (260)
T ss_pred             ccccCCcccccccCHHHhc---cCCcCccc--chHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1122335677899999987   56678888  99999              999999765 543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             .+....+++     .+||+.||++|||+++++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         204 YPGMTNPEVIQNLERGYRMPRPDN-------------CPEELYELM-----RLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             CCCCChHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHccCChhhCCCHHHHHH
Confidence            333333333333332222222221             125667788     9999999999999998764

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>KOG0587|consensus

Probab=99.86  E-value=3.4e-22  Score=209.83  Aligned_cols=165  Identities=29%  Similarity=0.466  Sum_probs=130.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+-.|++.++.||.|||.+.+||||+|-.|||++.++.|||+|||.+.+++                         +..
T Consensus       123 ~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQld-------------------------sT~  177 (953)
T KOG0587|consen  123 EWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLD-------------------------STV  177 (953)
T ss_pred             HHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeeee-------------------------ccc
Confidence            3467899999999999999999999999999999999999999999998765                         334


Q ss_pred             CCCcCcccccceeccccccccc--cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGV--KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~--~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ....+.+|||+|||||++....  ...|+..+  |+|||              |++.-||-.|.|               
T Consensus       178 grRnT~iGtP~WMAPEViac~e~~d~tyd~R~--D~WsL--------------GITaIEladG~P---------------  226 (953)
T KOG0587|consen  178 GRRNTFIGTPYWMAPEVIACDESPDATYDYRS--DLWSL--------------GITAIEMAEGAP---------------  226 (953)
T ss_pred             ccccCcCCCcccccceeeecccCCCCCccccc--chhhc--------------cceeehhcCCCC---------------
Confidence            5677889999999999997433  33455556  99999              999999866554               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      |..+......+..+...+++.+..+   -.|+        ....+||     ..||.+|-.+||+..++|.|||..+..
T Consensus       227 Pl~DmHPmraLF~IpRNPPPkLkrp---~kWs--------~~FndFI-----s~cL~Kd~e~RP~~~~ll~hpFi~e~~  289 (953)
T KOG0587|consen  227 PLCDMHPMRALFLIPRNPPPKLKRP---KKWS--------KKFNDFI-----STCLVKDYEQRPSTEELLKHPFITEQP  289 (953)
T ss_pred             CccCcchhhhhccCCCCCCccccch---hhHH--------HHHHHHH-----HHHHhhccccCcchhhhccCCcccccc
Confidence            4444444555555555665555433   2353        4455666     999999999999999999999998544

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.86  E-value=1.9e-22  Score=192.99  Aligned_cols=153  Identities=24%  Similarity=0.349  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||+|||++|++||||||+||+++.++.+||+|||++.....                        ...
T Consensus       100 ~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~------------------------~~~  155 (256)
T cd05112         100 ETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLD------------------------DQY  155 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeeccc------------------------Ccc
Confidence            45788999999999999999999999999999999999999999999874421                        001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  |+||+              |+++||+++ +.+               |
T Consensus       156 ~~~~~~~~~~~~~aPe~~~---~~~~~~~~--Dv~sl--------------G~~l~el~~~g~~---------------p  201 (256)
T cd05112         156 TSSTGTKFPVKWSSPEVFS---FSKYSSKS--DVWSF--------------GVLMWEVFSEGKT---------------P  201 (256)
T ss_pred             cccCCCccchhhcCHhHhc---cCCcChHH--HHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1122334567899999987   56688888  99999              999999765 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.+|++|||+.++++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~-----~~~l~~~p~~Rp~~~~~l~  253 (256)
T cd05112         202 YENRSNSEVVETINAGFRLYKPRL-------------ASQSVYELM-----QHCWKERPEDRPSFSLLLH  253 (256)
T ss_pred             CCcCCHHHHHHHHhCCCCCCCCCC-------------CCHHHHHHH-----HHHcccChhhCCCHHHHHH
Confidence            222222222332222211111211             125566777     9999999999999998876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=2.8e-22  Score=193.12  Aligned_cols=158  Identities=25%  Similarity=0.376  Sum_probs=114.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.......                      ...
T Consensus       106 ~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~----------------------~~~  163 (264)
T cd06653         106 NVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTIC----------------------MSG  163 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcccccccccccc----------------------ccC
Confidence            3578899999999999999999999999999999999999999999987542100                      011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...+...|+..|+|||++.   +..++.++  |+||+              |++++++++|+++               +
T Consensus       164 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~p---------------~  209 (264)
T cd06653         164 TGIKSVTGTPYWMSPEVIS---GEGYGRKA--DVWSV--------------ACTVVEMLTEKPP---------------W  209 (264)
T ss_pred             ccccccCCcccccCHhhhc---CCCCCccc--cHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223457899999999987   56677788  99999              9999998776542               1


Q ss_pred             CCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ..........+.. ......+|..             .++...+++     .+||+ +|.+|||+.+++.|||.
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~p~~-------------~~~~~~~~i-----~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         210 AEYEAMAAIFKIATQPTKPMLPDG-------------VSDACRDFL-----KQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             CccCHHHHHHHHHcCCCCCCCCcc-------------cCHHHHHHH-----HHHhc-CcccCccHHHHhcCCCC
Confidence            1111111111111 1122223332             236677888     99999 57999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.86  E-value=2.6e-22  Score=192.07  Aligned_cols=148  Identities=23%  Similarity=0.297  Sum_probs=106.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||.|||++|++||||||+||+++.++.+||+|||++.....                            
T Consensus       101 ~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~----------------------------  152 (254)
T cd05083         101 QLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSM----------------------------  152 (254)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceeccc----------------------------
Confidence            5678999999999999999999999999999999999999999999864321                            


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......+..|+|||.+.   +..++.+.  |+||+              |+++|++++ |++               |+
T Consensus       153 ~~~~~~~~~~y~~pe~~~---~~~~~~~~--Dv~sl--------------G~~l~el~~~g~~---------------p~  198 (254)
T cd05083         153 GVDNSKLPVKWTAPEALK---HKKFSSKS--DVWSY--------------GVLLWEVFSYGRA---------------PY  198 (254)
T ss_pred             cCCCCCCCceecCHHHhc---cCCcCchh--hHHHH--------------HHHHHHHHhCCCC---------------CC
Confidence            111223456799999987   56788888  99999              999999764 443               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...........+........+..             .+....+++     .+||+.+|.+|||+++++.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         199 PKMSLKEVKECVEKGYRMEPPEG-------------CPADVYVLM-----TSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             ccCCHHHHHHHHhCCCCCCCCCc-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            22222222222222222211111             125566777     9999999999999998774

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.86  E-value=2.9e-22  Score=193.53  Aligned_cols=153  Identities=19%  Similarity=0.231  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++......                        ..
T Consensus       107 ~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~------------------------~~  162 (270)
T cd05056         107 ASLILYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDE------------------------SY  162 (270)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccc------------------------cc
Confidence            457889999999999999999999999999999999999999999998754210                        00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+...++..|+|||.+.   ...++.++  ||||+              |++++|+++ |..               |
T Consensus       163 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p  208 (270)
T cd05056         163 YKASKGKLPIKWMAPESIN---FRRFTSAS--DVWMF--------------GVCMWEILMLGVK---------------P  208 (270)
T ss_pred             eecCCCCccccccChhhhc---cCCCCchh--hhHHH--------------HHHHHHHHHcCCC---------------C
Confidence            0111223456899999987   56778888  99999              999999653 432               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||..+|.+|||+.+++.
T Consensus       209 f~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~P~~Rpt~~~~~~  260 (270)
T cd05056         209 FQGVKNNDVIGRIENGERLPMPPN-------------CPPTLYSLM-----TKCWAYDPSKRPRFTELKA  260 (270)
T ss_pred             CCCCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            333332333333333333333322             125667787     9999999999999998775

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.86  E-value=2.2e-22  Score=196.31  Aligned_cols=153  Identities=19%  Similarity=0.246  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||.|||++|++||||||+||+++.++.+||+|||++......                       ....
T Consensus       131 ~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~-----------------------~~~~  187 (288)
T cd05050         131 EQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSA-----------------------DYYK  187 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecccccHhheEecCCCceEECccccceecccC-----------------------cccc
Confidence            46899999999999999999999999999999999999999999998754210                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   +..++.++  |+||+              ||++||+++ +..               |+
T Consensus       188 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~el~~~~~~---------------p~  233 (288)
T cd05050         188 ASENDAIPIRWMPPESIF---YNRYTTES--DVWAY--------------GVVLWEIFSYGMQ---------------PY  233 (288)
T ss_pred             ccCCCccChhhcCHHHHh---cCCCCchh--HHHHH--------------HHHHHHHHhCCCC---------------CC
Confidence            122234467799999987   66788888  99999              999999764 321               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.........+........+..             .+....+++     .+||+.||.+|||+.|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         234 YGMAHEEVIYYVRDGNVLSCPDN-------------CPLELYNLM-----RLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             CCCCHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHcccCcccCCCHHHHHH
Confidence            22222223333322222222222             125667788     9999999999999998874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.86  E-value=3.4e-22  Score=190.56  Aligned_cols=153  Identities=20%  Similarity=0.241  Sum_probs=108.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|+|++|++||||||+||+++.++.+||+|||++......                        ..
T Consensus        93 ~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~------------------------~~  148 (250)
T cd05085          93 KQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDG------------------------IY  148 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceecccc------------------------cc
Confidence            457889999999999999999999999999999999999999999998643210                        00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   ...++.++  |+||+              |+++|++++ +..               |
T Consensus       149 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~ll~~~~~~g~~---------------p  194 (250)
T cd05085         149 SSSGLKQIPIKWTAPEALN---YGRYSSES--DVWSY--------------GILLWETFSLGVC---------------P  194 (250)
T ss_pred             ccCCCCCCcccccCHHHhc---cCCCCchh--HHHHH--------------HHHHHHHhcCCCC---------------C
Confidence            1111223456799999987   56678888  99999              999999765 432               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             ......+++     .+||+.+|++|||+.|+++
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         195 YPGMTNQQAREQVEKGYRMSCPQK-------------CPDDVYKVM-----QRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHcccCcccCCCHHHHHH
Confidence            322222222223322222222221             125667788     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.86  E-value=4e-22  Score=190.88  Aligned_cols=155  Identities=23%  Similarity=0.298  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++..+....                      ...
T Consensus        97 ~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~----------------------~~~  154 (257)
T cd05040          97 STLCDYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNE----------------------DHY  154 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccc----------------------cce
Confidence            4678899999999999999999999999999999999999999999998653210                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   ...++.++  ||||+              ||+++||++ |..+               
T Consensus       155 ~~~~~~~~~~~y~~pE~~~---~~~~~~~~--Di~sl--------------G~~l~el~t~g~~p---------------  200 (257)
T cd05040         155 VMEEHLKVPFAWCAPESLR---TRTFSHAS--DVWMF--------------GVTLWEMFTYGEEP---------------  200 (257)
T ss_pred             ecccCCCCCceecCHHHhc---ccCcCchh--hhHHH--------------HHHHHHHHhCCCCC---------------
Confidence            1122356778899999987   56788888  99999              999999765 4432               


Q ss_pred             CCCchhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +......+....+.. ......+.             ..+....+++     .+||+.+|++|||+.+++.
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~li-----~~~l~~~p~~Rps~~~~~~  253 (257)
T cd05040         201 WAGLSGSQILKKIDKEGERLERPE-------------ACPQDIYNVM-----LQCWAHNPADRPTFAALRE  253 (257)
T ss_pred             CCCCCHHHHHHHHHhcCCcCCCCc-------------cCCHHHHHHH-----HHHCCCCcccCCCHHHHHH
Confidence            111111111111111 11111111             1225566777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.86  E-value=3.7e-22  Score=190.51  Aligned_cols=153  Identities=23%  Similarity=0.303  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||+.|++|+||||+||+++.++.++|+|||++.......                        .
T Consensus       103 ~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~------------------------~  158 (258)
T smart00219      103 SDLLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDD------------------------Y  158 (258)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceeccccc------------------------c
Confidence            4678999999999999999999999999999999999999999999987553210                        0


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+++.|+|||.+.   ...++.++  |+||+              |++++++++ +.+               |
T Consensus       159 ~~~~~~~~~~~y~~Pe~~~---~~~~~~~~--Di~sl--------------G~i~~~l~~~g~~---------------p  204 (258)
T smart00219      159 YKKKGGKLPIRWMAPESLK---DGKFTSKS--DVWSF--------------GVLLWEIFTLGES---------------P  204 (258)
T ss_pred             cccccCCCcccccChHHhc---cCCCCcch--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            0111223788999999986   56788888  99999              999999765 332               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +....................+..             .+....+++     .+||..||.+|||+.|+++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      205 YPGMSNEEVLEYLKKGYRLPKPEN-------------CPPEIYKLM-----LQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             CCCCCHHHHHHHHhcCCCCCCCCc-------------CCHHHHHHH-----HHHCcCChhhCcCHHHHHh
Confidence            322333333333333332222222             225666777     9999999999999998875

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.86  E-value=2.6e-22  Score=194.87  Aligned_cols=154  Identities=21%  Similarity=0.229  Sum_probs=109.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++||||||+||+++.++.+||+|||+++.+....                       ..
T Consensus       117 ~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~-----------------------~~  173 (280)
T cd05043         117 QQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMD-----------------------YH  173 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCc-----------------------eE
Confidence            3578899999999999999999999999999999999999999999997542110                       00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  ||||+              |+++||+++ |++               |
T Consensus       174 ~~~~~~~~~~~y~apE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~g~~---------------p  219 (280)
T cd05043         174 CLGDNENRPVKWMALESLV---NKEYSSAS--DVWSF--------------GVLLWELMTLGQT---------------P  219 (280)
T ss_pred             EeCCCCCcchhccCHHHHh---cCCCCchh--hHHHh--------------HHHHHHHhcCCCC---------------C
Confidence            0111234567899999987   56788888  99999              999999765 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .++...+++     .+||..||++|||+.|++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         220 YVEIDPFEMAAYLKDGYRLAQPIN-------------CPDELFAVM-----ACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             cCcCCHHHHHHHHHcCCCCCCCCc-------------CCHHHHHHH-----HHHcCCChhhCCCHHHHHH
Confidence            222222222222222211111111             125567788     9999999999999998874

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.86  E-value=3.1e-22  Score=190.98  Aligned_cols=154  Identities=21%  Similarity=0.256  Sum_probs=108.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||+|||++|++||||||+|||++.++.+||+|||++.......                       ..
T Consensus        93 ~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~-----------------------~~  149 (251)
T cd05041          93 KKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGI-----------------------YT  149 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCc-----------------------ce
Confidence            3567899999999999999999999999999999999999999999987542100                       00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  |+||+              |++++++++ +..               |
T Consensus       150 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~sl--------------G~i~~~l~t~~~~---------------p  195 (251)
T cd05041         150 VSDGLKQIPIKWTAPEALN---YGRYTSES--DVWSY--------------GILLWETFSLGDT---------------P  195 (251)
T ss_pred             eccccCcceeccCChHhhc---cCCCCcch--hHHHH--------------HHHHHHHHhccCC---------------C
Confidence            0111223466799999987   56788888  99999              999999775 332               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .+....+++     .+||+.+|.+|||+.|+++
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         196 YPGMSNQQTRERIESGYRMPAPQL-------------CPEEIYRLM-----LQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             CccCCHHHHHHHHhcCCCCCCCcc-------------CCHHHHHHH-----HHHhccChhhCcCHHHHHH
Confidence            222222222222222222222222             125566777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.86  E-value=3.1e-22  Score=197.27  Aligned_cols=154  Identities=19%  Similarity=0.228  Sum_probs=108.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.....                       ....
T Consensus       110 ~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~-----------------------~~~~  166 (303)
T cd05110         110 LLLNWCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGD-----------------------EKEY  166 (303)
T ss_pred             HHHHHHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCc-----------------------cccc
Confidence            57889999999999999999999999999999999999999999999854311                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......++..|+|||++.   +..++.++  ||||+              |+++||+++ ++.               |+
T Consensus       167 ~~~~~~~~~~y~~PE~~~---~~~~~~~~--Diwsl--------------G~~l~el~t~g~~---------------p~  212 (303)
T cd05110         167 NADGGKMPIKWMALECIH---YRKFTHQS--DVWSY--------------GVTIWELMTFGGK---------------PY  212 (303)
T ss_pred             ccCCCccccccCCHHHhc---cCCCChHH--HHHHH--------------HHHHHHHHhCCCC---------------CC
Confidence            122345677899999987   67788888  99999              999999654 222               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+.........+........+..             ......+++     ..||..||++|||++++++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         213 DGIPTREIPDLLEKGERLPQPPI-------------CTIDVYMVM-----VKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             CCCCHHHHHHHHHCCCCCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            22222221122221222211111             124456777     99999999999999998774

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.86  E-value=3.7e-22  Score=191.14  Aligned_cols=149  Identities=23%  Similarity=0.310  Sum_probs=107.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++|++|+||||+||+++.++.+||+|||.+.....                           
T Consensus       102 ~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~---------------------------  154 (256)
T cd05039         102 AQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQ---------------------------  154 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEccccccccccc---------------------------
Confidence            46789999999999999999999999999999999999999999999875421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                       ......++..|+|||.+.   ...++.++  |+||+              |+++++++. |..               |
T Consensus       155 -~~~~~~~~~~~~ape~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~g~~---------------p  199 (256)
T cd05039         155 -GQDSGKLPVKWTAPEALR---EKKFSTKS--DVWSF--------------GILLWEIYSFGRV---------------P  199 (256)
T ss_pred             -ccccCCCcccccCchhhc---CCcCCcHH--HHHHH--------------HHHHHHHHhcCCC---------------C
Confidence             011223456799999987   56677777  99999              999999654 332               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...+.......+........+..             .++...+++     .+||..+|.+|||+.++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         200 YPRIPLKDVVPHVEKGYRMEAPEG-------------CPPEVYKVM-----KDCWELDPAKRPTFKQLRE  251 (256)
T ss_pred             CCCCCHHHHHHHHhcCCCCCCccC-------------CCHHHHHHH-----HHHhccChhhCcCHHHHHH
Confidence            222222222222222212222211             226667787     9999999999999998875

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.86  E-value=4.2e-22  Score=192.05  Aligned_cols=154  Identities=24%  Similarity=0.292  Sum_probs=109.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-----CeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-----HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-----~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      .++..++.|++.||+|||++|++|+||||+||+++.++     .+||+|||++.......                    
T Consensus       106 ~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~--------------------  165 (269)
T cd05044         106 KELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSD--------------------  165 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCccccccccccc--------------------
Confidence            45778999999999999999999999999999999877     89999999997543110                    


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhh
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIR  155 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~  155 (454)
                         .........++..|+|||++.   +..++.++  ||||+              |+++||+++ +..           
T Consensus       166 ---~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~ellt~g~~-----------  212 (269)
T cd05044         166 ---YYRKEGEGLLPVRWMAPESLL---DGKFTTQS--DVWSF--------------GVLMWEILTLGQQ-----------  212 (269)
T ss_pred             ---ccccCcccCCCccccCHHHHc---cCCcccch--hHHHH--------------HHHHHHHHHcCCC-----------
Confidence               001122335677899999987   56778888  99999              999999764 432           


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                          |+...........+........+..             .+....+++     .+||+.+|.+|||++++++
T Consensus       213 ----p~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~i~~  265 (269)
T cd05044         213 ----PYPALNNQEVLQHVTAGGRLQKPEN-------------CPDKIYQLM-----TNCWAQDPSERPTFDRIQE  265 (269)
T ss_pred             ----CCcccCHHHHHHHHhcCCccCCccc-------------chHHHHHHH-----HHHcCCCcccCCCHHHHHH
Confidence                2222222222222222222222222             125566777     9999999999999998764

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.86  E-value=3.1e-22  Score=194.84  Aligned_cols=170  Identities=22%  Similarity=0.290  Sum_probs=107.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.......                      ...
T Consensus       108 ~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~----------------------~~~  165 (284)
T cd05081         108 RKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDK----------------------EYY  165 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccCCC----------------------cce
Confidence            4578899999999999999999999999999999999999999999998543210                      000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......++..|+|||++.   +..++.++  ||||+              |++++|++++...................
T Consensus       166 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~~~~~~~~~~~~~~~~~~~~  226 (284)
T cd05081         166 KVREPGESPIFWYAPESLT---ESKFSVAS--DVWSF--------------GVVLYELFTYSDKSCSPPAEFMRMMGNDK  226 (284)
T ss_pred             eecCCCCCceEeeCHHHhc---cCCcChHH--HHHHH--------------HHHHHHHhhcCCcCCCcchhhhhhccccc
Confidence            1111223456799999987   56788888  99999              99999977643211000000000000000


Q ss_pred             CCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .... .......+........+..             ......+++     .+||..+|++|||++|+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         227 QGQMIVYHLIELLKNNGRLPAPPG-------------CPAEIYAIM-----KECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             ccccchHHHHHHHhcCCcCCCCCC-------------CCHHHHHHH-----HHHccCChhhCCCHHHHHH
Confidence            0000 0111111111111111111             125567777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.86  E-value=3.7e-22  Score=192.80  Aligned_cols=153  Identities=20%  Similarity=0.217  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.....                       ....
T Consensus       114 ~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~-----------------------~~~~  170 (273)
T cd05074         114 TLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSG-----------------------DYYR  170 (273)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcccccccccCC-----------------------ccee
Confidence            57889999999999999999999999999999999999999999998854210                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+++.|++||.+.   ...++.++  ||||+              ||++|++++ +.+               |+
T Consensus       171 ~~~~~~~~~~~~~pe~~~---~~~~~~~s--Di~sl--------------G~il~el~~~g~~---------------p~  216 (273)
T cd05074         171 QGCASKLPVKWLALESLA---DNVYTTHS--DVWAF--------------GVTMWEIMTRGQT---------------PY  216 (273)
T ss_pred             cCCCccCchhhcCHhHHh---cCccchhh--hhHHH--------------HHHHHHHhhCCCC---------------CC
Confidence            122334567899999987   56677777  99999              999999765 433               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...........+........+..             ......+++     .+||+.+|.+|||+.+++.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~-----~~~l~~~p~~Rps~~~~~~  267 (273)
T cd05074         217 AGVENSEIYNYLIKGNRLKQPPD-------------CLEDVYELM-----CQCWSPEPKCRPSFQHLRD  267 (273)
T ss_pred             CCCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            22222222222222222111111             125566777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.86  E-value=6.8e-22  Score=190.03  Aligned_cols=153  Identities=24%  Similarity=0.320  Sum_probs=108.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||+.|++||||||+||+++..+.+||+|||++......                        ..
T Consensus       102 ~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~------------------------~~  157 (260)
T cd05073         102 PKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDN------------------------EY  157 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCC------------------------Cc
Confidence            457889999999999999999999999999999999999999999998754210                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   ...++.++  |+||+              |+++|++++ |++               |
T Consensus       158 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~t~g~~---------------p  203 (260)
T cd05073         158 TAREGAKFPIKWTAPEAIN---FGSFTIKS--DVWSF--------------GILLMEIVTYGRI---------------P  203 (260)
T ss_pred             ccccCCcccccccCHhHhc---cCCcCccc--cchHH--------------HHHHHHHHhcCCC---------------C
Confidence            1122234567899999987   56678888  99999              999999775 543               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             ......+++     .+||+.||++||++.+++.
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         204 YPGMSNPEVIRALERGYRMPRPEN-------------CPEELYNIM-----MRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             CCCCCHHHHHHHHhCCCCCCCccc-------------CCHHHHHHH-----HHHcccCcccCcCHHHHHH
Confidence            222222222222222211111111             125566777     9999999999999997763

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.85  E-value=3.6e-22  Score=192.23  Aligned_cols=154  Identities=27%  Similarity=0.402  Sum_probs=109.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.|++.||.|||++|++|+||||+||+++.++.++|+|||++.....                         ...
T Consensus       107 ~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~-------------------------~~~  161 (267)
T cd08228         107 TVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS-------------------------KTT  161 (267)
T ss_pred             HHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccc-------------------------hhH
Confidence            5788999999999999999999999999999999999999999999875431                         011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......|++.|+|||.+.   +..++.++  |+||+              |+++||+++++.+...             .
T Consensus       162 ~~~~~~~~~~~~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~g~~p~~~-------------~  209 (267)
T cd08228         162 AAHSLVGTPYYMSPERIH---ENGYNFKS--DIWSL--------------GCLLYEMAALQSPFYG-------------D  209 (267)
T ss_pred             HHhcCCCCccccChhhhc---cCCCCchh--hHHHH--------------HHHHHHHhcCCCCCcc-------------c
Confidence            122356889999999987   56677777  99999              9999998765532100             0


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ..........+.....+..+.            ...+....+++     .+||+.||.+|||+.++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~li-----~~cl~~~p~~Rp~~~~vl~  260 (267)
T cd08228         210 KMNLFSLCQKIEQCDYPPLPT------------EHYSEKLRELV-----SMCIYPDPDQRPDIGYVHQ  260 (267)
T ss_pred             cccHHHHHHHHhcCCCCCCCh------------hhcCHHHHHHH-----HHHCCCCcccCcCHHHHHH
Confidence            001111222222111111111            11225567788     9999999999999998886

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.85  E-value=3.8e-22  Score=192.63  Aligned_cols=160  Identities=22%  Similarity=0.270  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ....
T Consensus       101 ~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~-----------------------~~~~  157 (269)
T cd05042         101 VLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPE-----------------------DYYI  157 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccc-----------------------hhee
Confidence            46789999999999999999999999999999999999999999998643210                       0001


Q ss_pred             CCcCcccccceecccccccc----ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhc
Q psy7309          83 SHTGQVGTALYAAPELDSHG----VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRE  157 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~----~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~  157 (454)
                      ......++..|+|||++...    ....++.++  ||||+              ||++||+++ +.+             
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~--Diwsl--------------G~~l~el~~~~~~-------------  208 (269)
T cd05042         158 TKDCHAVPLRWLAPELVEIRGQDLLPKDQTKKS--NIWSL--------------GVTMWELFTAADQ-------------  208 (269)
T ss_pred             ccCCCCCcccccCHHHHhhccccccccccchhh--HHHHH--------------HHHHHHHHhCCCC-------------
Confidence            11334567789999997521    123556677  99999              999999765 332             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                        |+........+..........++...  ..      ...++...+++     ..|+ .||++|||++|+++
T Consensus       209 --p~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~~~-----~~~~-~dp~~Rpt~~~v~~  265 (269)
T cd05042         209 --PYPDLSDEQVLKQVVREQDIKLPKPQ--LD------LKYSDRWYEVM-----QFCW-LDPETRPTAEEVHE  265 (269)
T ss_pred             --CCCcCCHHHHHHHHhhccCccCCCCc--cc------ccCCHHHHHHH-----HHHh-cCcccccCHHHHHH
Confidence              22221111222222222222222211  00      11224445666     7787 59999999998874

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.85  E-value=4.4e-22  Score=195.17  Aligned_cols=158  Identities=16%  Similarity=0.200  Sum_probs=107.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.|++.||+|||++|++||||||+||+++.++.+||+|||++......                       ....
T Consensus       130 ~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~-----------------------~~~~  186 (295)
T cd05097         130 NLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSG-----------------------DYYR  186 (295)
T ss_pred             HHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcCCCcEEecccccccccccC-----------------------ccee
Confidence            56789999999999999999999999999999999999999999998754210                       0011


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......++..|+|||++.   ...++.++  |+||+              |+++++++++..             ..|+.
T Consensus       187 ~~~~~~~~~~y~aPE~~~---~~~~~~~~--DvwSl--------------G~~l~el~~~~~-------------~~p~~  234 (295)
T cd05097         187 IQGRAVLPIRWMAWESIL---LGKFTTAS--DVWAF--------------GVTLWEMFTLCK-------------EQPYS  234 (295)
T ss_pred             ccCcCcCceeecChhhhc---cCCcCchh--hHHHH--------------HHHHHHHHHcCC-------------CCCCc
Confidence            122345578899999987   56788888  99999              999999764210             11222


Q ss_pred             Cchhhhhhhhh----ccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         163 GSNVQKSLQKF----QKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       163 ~~~~~~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...........    .......+....          ....+...+++     .+||+.||++|||++++++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~li-----~~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         235 LLSDEQVIENTGEFFRNQGRQIYLSQT----------PLCPSPVFKLM-----MRCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             ccChHHHHHHHHHhhhhccccccCCCC----------CCCCHHHHHHH-----HHHcCCCchhCcCHHHHHH
Confidence            21111111111    101111111110          11235667888     9999999999999998864

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.85  E-value=4.6e-22  Score=199.72  Aligned_cols=155  Identities=21%  Similarity=0.314  Sum_probs=108.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+.+++.|++.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       179 ~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~-----------------------~~~  235 (343)
T cd05103         179 EDLICYSFQVAKGMEFLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKD-----------------------PDY  235 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccC-----------------------cch
Confidence            356789999999999999999999999999999999999999999998754211                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  ||||+              |+++|++++ |..               |
T Consensus       236 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~g~~---------------p  281 (343)
T cd05103         236 VRKGDARLPLKWMAPETIF---DRVYTIQS--DVWSF--------------GVLLWEIFSLGAS---------------P  281 (343)
T ss_pred             hhcCCCCCCcceECcHHhc---CCCCCchh--hHHHH--------------HHHHHHHHHCCCC---------------C
Confidence            1112234567899999987   56788888  99999              999999763 332               1


Q ss_pred             CCCchh-hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNV-QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +..... ......+........|..             .++...+++     .+||+.||++|||+.|+++|
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-----~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         282 YPGVKIDEEFCRRLKEGTRMRAPDY-------------TTPEMYQTM-----LDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             CCCccccHHHHHHHhccCCCCCCCC-------------CCHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            111111 111112222222222222             125566777     99999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.85  E-value=4.9e-22  Score=190.16  Aligned_cols=148  Identities=20%  Similarity=0.262  Sum_probs=103.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-------CeEEecccchhhhhhhcCCCccccccCccCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-------HVKIGDFGLATNILQKHAGPLARELTGYILPPIDS   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-------~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~   74 (454)
                      ..+..++.||+.||+|||++||+||||||+|||++.++       .+||+|||++.....                    
T Consensus       101 ~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~--------------------  160 (259)
T cd05037         101 HWKLDVAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS--------------------  160 (259)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccccccc--------------------
Confidence            35678899999999999999999999999999999887       799999999875421                    


Q ss_pred             CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-chhhHHHHHHH
Q psy7309          75 TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-RPKTLEELKHN  153 (454)
Q Consensus        75 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-~~~~~~~l~~~  153 (454)
                               .....++..|+|||++... ...++.++  |+||+              |+++++++++ ..         
T Consensus       161 ---------~~~~~~~~~y~aPE~~~~~-~~~~~~~~--Di~sl--------------G~~~~~l~~~~~~---------  205 (259)
T cd05037         161 ---------REERVERIPWIAPECIRNG-QASLTIAA--DKWSF--------------GTTLLEICSNGEE---------  205 (259)
T ss_pred             ---------ccccccCCCccChhhhcCC-CCCcchhh--HHHHH--------------HHHHHHHHhCCCC---------
Confidence                     1224566789999998721 13677788  99999              9999997653 22         


Q ss_pred             hhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         154 IRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       154 i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                            |+...........+....  ..+..             ......+++     .+||..||.+|||+.++++
T Consensus       206 ------p~~~~~~~~~~~~~~~~~--~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         206 ------PLSTLSSSEKERFYQDQH--RLPMP-------------DCAELANLI-----NQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             ------CcccCCchhHHHHHhcCC--CCCCC-------------CchHHHHHH-----HHHhccChhhCCCHHHHHH
Confidence                  111111111111111111  11110             114556777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.85  E-value=8.3e-22  Score=190.54  Aligned_cols=161  Identities=21%  Similarity=0.283  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++|++||||||+|||++.++.+||+|||++......                       ....
T Consensus       100 ~~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~-----------------------~~~~  156 (268)
T cd05086         100 LLQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKE-----------------------DYIE  156 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcc-----------------------hhhh
Confidence            46789999999999999999999999999999999999999999987632110                       0011


Q ss_pred             CCcCcccccceeccccccccc----cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          83 SHTGQVGTALYAAPELDSHGV----KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~----~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      ......|+..|+|||++....    ...++.++  ||||+              |+++||++++..              
T Consensus       157 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~--Diwsl--------------G~~l~el~~~~~--------------  206 (268)
T cd05086         157 TEDDKCVPLRWLAPELVGEFHGGLITAEQTKPS--NVWAL--------------GVTLWELFENAA--------------  206 (268)
T ss_pred             cccCCcCcccccCchhcccccCccccCCCCCcc--hhHHH--------------HHHHHHHHhCCC--------------
Confidence            223457889999999975211    12345667  99999              999999764211              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .|+...........+........+...  +.      ...++...+++     ..|| .+|.+|||++|+++
T Consensus       207 ~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~~~~l~-----~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         207 QPYSHLSDREVLNHVIKDQQVKLFKPQ--LE------LPYSERWYEVL-----QFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             CCCCCCCHHHHHHHHHhhcccccCCCc--cC------CCCcHHHHHHH-----HHHh-hCcccCCCHHHHHH
Confidence            122222222222222212222111110  00      11225556677     8898 78999999998864

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.85  E-value=8.9e-22  Score=190.93  Aligned_cols=169  Identities=24%  Similarity=0.287  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++.......                      ...
T Consensus       109 ~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~----------------------~~~  166 (284)
T cd05038         109 KRLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDK----------------------DYY  166 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccccCC----------------------cce
Confidence            4578899999999999999999999999999999999999999999998653110                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......++..|+|||.+.   ...++.++  |+||+              |++++|++++..+.......... ..++.
T Consensus       167 ~~~~~~~~~~~~~~Pe~~~---~~~~~~~~--Di~sl--------------G~~l~el~tg~~p~~~~~~~~~~-~~~~~  226 (284)
T cd05038         167 YVKEPGESPIFWYAPECLR---TSKFSSAS--DVWSF--------------GVTLYELFTYGDPSQSPPAEFLR-MIGIA  226 (284)
T ss_pred             eccCCCCCcccccCcHHHc---cCCCCccc--chHHH--------------hhhhheeeccCCCcccccchhcc-ccccc
Confidence            1111234566799999987   56777788  99999              99999988765422111111000 01111


Q ss_pred             CC-chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TG-SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .. .........+........+..             ......+++     .+||+.||.+|||+.|+++
T Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         227 QGQMIVTRLLELLKEGERLPRPPS-------------CPDEVYDLM-----KLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             cccccHHHHHHHHHcCCcCCCCcc-------------CCHHHHHHH-----HHHhccChhhCCCHHHHHH
Confidence            11 111112222221111111111             124556677     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.85  E-value=7.5e-22  Score=190.06  Aligned_cols=153  Identities=29%  Similarity=0.449  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++|++|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       106 ~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~-------------------------~~  160 (267)
T cd08229         106 KTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS-------------------------KT  160 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhcccc-------------------------CC
Confidence            35788999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|+|||.+.   +..++.++  |+||+              |+++|+++++..+               +
T Consensus       161 ~~~~~~~~~~~~~ape~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~p---------------~  206 (267)
T cd08229         161 TAAHSLVGTPYYMSPERIH---ENGYNFKS--DIWSL--------------GCLLYEMAALQSP---------------F  206 (267)
T ss_pred             cccccccCCcCccCHHHhc---CCCccchh--hHHHH--------------HHHHHHHHhCCCC---------------c
Confidence            1223457899999999987   56677778  99999              9999997765432               1


Q ss_pred             CCc--hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGS--NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.  ........+........+.            ...++...+++     .+||+.||.+|||+.++++
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~li-----~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         207 YGDKMNLYSLCKKIEQCDYPPLPS------------DHYSEELRQLV-----NMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             ccccchHHHHhhhhhcCCCCCCCc------------ccccHHHHHHH-----HHhcCCCcccCCCHHHHHH
Confidence            111  1111122222111111111            11235677888     9999999999999997664

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.85  E-value=7.1e-22  Score=189.80  Aligned_cols=147  Identities=18%  Similarity=0.267  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC--------eEEecccchhhhhhhcCCCccccccCccCCCCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH--------VKIGDFGLATNILQKHAGPLARELTGYILPPIDS   74 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~--------vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~   74 (454)
                      .+..++.||+.||+|||++||+||||||+||+++.++.        +|++|||++....                     
T Consensus       101 ~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~---------------------  159 (258)
T cd05078         101 WKLEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVL---------------------  159 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccC---------------------
Confidence            46778999999999999999999999999999987765        6999999876431                     


Q ss_pred             CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHh
Q psy7309          75 TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNI  154 (454)
Q Consensus        75 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i  154 (454)
                              ......++..|+|||++..  ...++.++  ||||+              |+++|++++|...         
T Consensus       160 --------~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~~l~~l~~g~~~---------  204 (258)
T cd05078         160 --------PKEILLERIPWVPPECIEN--PQNLSLAA--DKWSF--------------GTTLWEIFSGGDK---------  204 (258)
T ss_pred             --------CchhccccCCccCchhccC--CCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------
Confidence                    1123467888999999872  24567777  99999              9999998775321         


Q ss_pred             hhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         155 RRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       155 ~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                           |+............  .....+|...             .....+++     .+||+.||++|||++++++
T Consensus       205 -----~~~~~~~~~~~~~~--~~~~~~~~~~-------------~~~~~~li-----~~~l~~~p~~Rps~~~il~  255 (258)
T cd05078         205 -----PLSALDSQKKLQFY--EDRHQLPAPK-------------WTELANLI-----NQCMDYEPDFRPSFRAIIR  255 (258)
T ss_pred             -----ChhhccHHHHHHHH--HccccCCCCC-------------cHHHHHHH-----HHHhccChhhCCCHHHHHH
Confidence                 11111111111111  1112222221             14556788     9999999999999998876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.85  E-value=4.8e-22  Score=190.72  Aligned_cols=153  Identities=25%  Similarity=0.321  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.|++.||.|||++|++|+||||+||+++.++.+||+|||++......                        ..
T Consensus       103 ~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~------------------------~~  158 (261)
T cd05034         103 PQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDD------------------------EY  158 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccch------------------------hh
Confidence            467889999999999999999999999999999999999999999998754210                        00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  |+||+              |++++++++ |+.               |
T Consensus       159 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~sl--------------G~il~~l~t~g~~---------------p  204 (261)
T cd05034         159 TAREGAKFPIKWTAPEAAN---YGRFTIKS--DVWSF--------------GILLTEIVTYGRV---------------P  204 (261)
T ss_pred             hhhhccCCCccccCHHHhc---cCCcCchh--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            0111223456899999987   56678888  99999              999999765 543               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             ......+++     .+||+.||.+|||++++..
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~i-----~~~l~~~p~~Rp~~~~l~~  256 (261)
T cd05034         205 YPGMTNREVLEQVERGYRMPRPPN-------------CPEELYDLM-----LQCWDKDPEERPTFEYLQS  256 (261)
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHcccCcccCCCHHHHHH
Confidence            323223333333332222222222             125566777     9999999999999997763

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.85  E-value=4.8e-22  Score=195.95  Aligned_cols=154  Identities=25%  Similarity=0.340  Sum_probs=108.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||+|||++||+|+||||+|||++.++.+||+|||++......                       ...
T Consensus       141 ~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~-----------------------~~~  197 (302)
T cd05055         141 EDLLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMND-----------------------SNY  197 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccCC-----------------------Cce
Confidence            467889999999999999999999999999999999999999999998754210                       000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  ||||+              ||++||+++ |.+               |
T Consensus       198 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~el~t~g~~---------------p  243 (302)
T cd05055         198 VVKGNARLPVKWMAPESIF---NCVYTFES--DVWSY--------------GILLWEIFSLGSN---------------P  243 (302)
T ss_pred             eecCCCCcccccCCHhhhc---cCCCCcHh--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1122235678899999987   56688888  99999              999999765 433               2


Q ss_pred             CCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +........+.+.. .......+..             .++...+++     .+||+.+|++|||+.|+++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         244 YPGMPVDSKFYKLIKEGYRMAQPEH-------------APAEIYDIM-----KTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             cCCCCchHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcCCCchhCcCHHHHHH
Confidence            22222111111111 1111111111             125666777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.85  E-value=2.8e-22  Score=181.32  Aligned_cols=152  Identities=18%  Similarity=0.224  Sum_probs=106.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.+++||+.||+|||+++      ||+|||++.++.+|+  ||++.....                           
T Consensus        17 ~~~~~i~~qi~~~L~~lH~~~------kp~Nil~~~~~~~~~--fG~~~~~~~---------------------------   61 (176)
T smart00750       17 EEIWAVCLQCLRALRELHRQA------KSGNILLTWDGLLKL--DGSVAFKTP---------------------------   61 (176)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC------CcccEeEcCccceee--ccceEeecc---------------------------
Confidence            468999999999999999998      999999999999999  999874321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                         ....||+.|||||++.   +..|+.++  ||||+              ||++|||++++++....            
T Consensus        62 ---~~~~g~~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~elltg~~p~~~~------------  107 (176)
T smart00750       62 ---EQSRVDPYFMAPEVIQ---GQSYTEKA--DIYSL--------------GITLYEALDYELPYNEE------------  107 (176)
T ss_pred             ---ccCCCcccccChHHhc---CCCCcchh--hHHHH--------------HHHHHHHHhCCCCcccc------------
Confidence               1126899999999998   67788888  99999              99999987766422110            


Q ss_pred             CCchhhhhhhhhccCCCCCCCcccccccccccccccccc--chhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSN--FQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                        ......+..+........+....  ..     .....  ...+++     .+||+.||.+|||+.|+++|+|+..
T Consensus       108 --~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~i-----~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      108 --RELSAILEILLNGMPADDPRDRS--NL-----ESVSAARSFADFM-----RVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             --chhcHHHHHHHHHhccCCccccc--cH-----HHHHhhhhHHHHH-----HHHHhcccccccCHHHHHHHHHHHH
Confidence              00011111111111111111000  00     00111  466777     9999999999999999999999764

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.85  E-value=8.2e-22  Score=193.36  Aligned_cols=97  Identities=19%  Similarity=0.234  Sum_probs=78.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.|++.||+|||++||+||||||+|||++.++.+||+|||++..+...                       ....
T Consensus       131 ~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~-----------------------~~~~  187 (296)
T cd05095         131 TLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSG-----------------------DYYR  187 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecccCChheEEEcCCCCEEeccCcccccccCC-----------------------ccee
Confidence            58899999999999999999999999999999999999999999998754210                       0001


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK  141 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~  141 (454)
                      ......++..|+|||+..   ...++.++  |+||+              ||++||+++
T Consensus       188 ~~~~~~~~~~~~~pe~~~---~~~~~~~~--DiwSl--------------G~~l~el~~  227 (296)
T cd05095         188 IQGRAVLPIRWMSWESIL---LGKFTTAS--DVWAF--------------GVTLWEILT  227 (296)
T ss_pred             ccCcCcCccccCCHHHHh---cCCccchh--hhhHH--------------HHHHHHHHH
Confidence            122234567899999877   56788888  99999              999999764

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.85  E-value=1.1e-21  Score=190.52  Aligned_cols=154  Identities=20%  Similarity=0.238  Sum_probs=109.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||+|||++||+||||||+||+++.++.+||+|||+++.....                       ...
T Consensus       109 ~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~-----------------------~~~  165 (279)
T cd05057         109 QYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVD-----------------------EKE  165 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCc-----------------------ccc
Confidence            357889999999999999999999999999999999999999999999854311                       000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   ...++.++  |+||+              |++++|+++ +..               |
T Consensus       166 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~g~~---------------p  211 (279)
T cd05057         166 YHAEGGKVPIKWMALESIL---HRIYTHKS--DVWSY--------------GVTVWELMTFGAK---------------P  211 (279)
T ss_pred             eecCCCcccccccCHHHhh---cCCcCchh--hHHHH--------------HHHHHHHhcCCCC---------------C
Confidence            1111223467899999987   56778888  99999              999999765 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........|..             .+....+++     .+||..||++|||+.++++
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~-----~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         212 YEGIPAVEIPDLLEKGERLPQPPI-------------CTIDVYMVL-----VKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             CCCCCHHHHHHHHhCCCCCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCCCHHHHHH
Confidence            223222333333332322222222             124556677     9999999999999997764

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.85  E-value=8.5e-22  Score=189.92  Aligned_cols=155  Identities=19%  Similarity=0.227  Sum_probs=107.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+..++.|++.||+|||+.|++||||||+||+++.++.+||+|||++.......                      ...
T Consensus       107 ~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~----------------------~~~  164 (268)
T cd05063         107 YQLVGMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDP----------------------EGT  164 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceeccccc----------------------ccc
Confidence            3578899999999999999999999999999999999999999999987542110                      000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........+..|+|||++.   ...++.++  |+||+              |+++||+++ |..               |
T Consensus       165 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Dv~sl--------------G~il~ell~~g~~---------------p  210 (268)
T cd05063         165 YTTSGGKIPIRWTAPEAIA---YRKFTSAS--DVWSF--------------GIVMWEVMSFGER---------------P  210 (268)
T ss_pred             eeccCCCcCceecCHHHhh---cCCcChHh--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            0111223356799999987   56678888  99999              999999654 443               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             ......+++     .+||+.||++||++.++++
T Consensus       211 ~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~~~~li-----~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         211 YWDMSNHEVMKAINDGFRLPAPMD-------------CPSAVYQLM-----LQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             CCcCCHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCCcccCcCHHHHHH
Confidence            222222222222222211111111             125566777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.85  E-value=1.1e-21  Score=188.48  Aligned_cols=155  Identities=30%  Similarity=0.417  Sum_probs=110.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||.|||+.||+|+||||+||+++.++.++|+|||++.....                         ..
T Consensus       106 ~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~-------------------------~~  160 (267)
T cd08224         106 RTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSS-------------------------KT  160 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccC-------------------------CC
Confidence            36789999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|++.|+|||.+.   +..++.++  |+||+              |+++++++++..+...             
T Consensus       161 ~~~~~~~~~~~y~apE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~p~~~-------------  208 (267)
T cd08224         161 TAAHSLVGTPYYMSPERIH---ENGYNFKS--DIWSL--------------GCLLYEMAALQSPFYG-------------  208 (267)
T ss_pred             cccceecCCccccCHHHhc---cCCCCchh--cHHHH--------------HHHHHHHHHCCCCccc-------------
Confidence            1223456889999999987   56788888  99999              9999997765432100             


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...+.......+........|..            ..+....++|     .+||..+|++|||+.++++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~i-----~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         209 DKMNLYSLCKKIEKCDYPPLPAD------------HYSEELRDLV-----SRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             CCccHHHHHhhhhcCCCCCCChh------------hcCHHHHHHH-----HHHcCCCcccCCCHHHHHH
Confidence            00111112222221111112210            1225566777     9999999999999998774

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>PRK12305 thrS threonyl-tRNA synthetase; Reviewed

Probab=99.84  E-value=7.9e-21  Score=203.36  Aligned_cols=151  Identities=10%  Similarity=-0.011  Sum_probs=133.4

Q ss_pred             CCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCC
Q psy7309         294 VSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPH  367 (454)
Q Consensus       294 ~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~  367 (454)
                      .+++.+++       |....+++.|++.++++|+++||.+|.||+|++.+++..+      .++||+|.|.+|+.++|||
T Consensus       195 ~~G~~~~~-------p~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP  267 (575)
T PRK12305        195 GPGLPVWH-------PKGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKP  267 (575)
T ss_pred             CCcceEEe-------ccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEec
Confidence            44566666       7888899999999999999999999999999999998653      2589999999999999999


Q ss_pred             CCCHHHHHHHHHcCC---CCceeeEeecCccccCCCC----CCccceEEEEEEEEEcCCCCcccH--HHHHHHHHHHHHh
Q psy7309         368 DLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRVL----GFHPRELYECAFDIVTNTPGVLTM--GSLRRCLMGSFRR  438 (454)
Q Consensus       368 d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~~----~g~~rE~~Q~g~eiig~~~~~~~d--~e~~~~~~~~l~~  438 (454)
                      +.|.+++|+++.+..   ..|+|+||+|+|||++.++    -+|.|||+|+|++++|.+ +..+|  +|++.++.++|+.
T Consensus       268 ~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~if~~~-~~~~~e~~e~i~l~~~~~~~  346 (575)
T PRK12305        268 MNCPGHILIYKSRLRSYRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHIFCTP-DQIEDEILKVLDFVLELLKD  346 (575)
T ss_pred             CCCHHHHHHHhcccCChhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEEEeCH-HHHHHHHHHHHHHHHHHHHH
Confidence            999999999886432   4799999999999998774    259999999999999987 66677  9999999999999


Q ss_pred             CCCCCcEEEcCccc
Q psy7309         439 FNYGNISFAPHPRV  452 (454)
Q Consensus       439 ~~~~~~~i~i~~~~  452 (454)
                      ||+.++.|++|+|.
T Consensus       347 lgl~~~~i~l~~r~  360 (575)
T PRK12305        347 FGFKDYYLELSTRE  360 (575)
T ss_pred             cCCCeEEEEEeCCC
Confidence            99998999999975

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.84  E-value=1.1e-21  Score=200.96  Aligned_cols=154  Identities=24%  Similarity=0.331  Sum_probs=108.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       237 ~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~-----------------------~~~  293 (400)
T cd05105         237 LDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHD-----------------------SNY  293 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCCEEEEEeCCcceecccc-----------------------ccc
Confidence            357889999999999999999999999999999999999999999998754211                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||++.   +..++.++  ||||+              ||++||+++ +..               |
T Consensus       294 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--DiwSl--------------Gvil~ellt~g~~---------------P  339 (400)
T cd05105         294 VSKGSTFLPVKWMAPESIF---DNLYTTLS--DVWSY--------------GILLWEIFSLGGT---------------P  339 (400)
T ss_pred             cccCCcCCCcceEChhhhc---CCCCCchh--hHHHH--------------HHHHHHHHHCCCC---------------C
Confidence            1223346778899999987   56788888  99999              999999753 332               1


Q ss_pred             CCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...... .....+........+..             ......+++     .+||+.||++|||+.++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         340 YPGMIVDSTFYNKIKSGYRMAKPDH-------------ATQEVYDIM-----VKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             CcccchhHHHHHHHhcCCCCCCCcc-------------CCHHHHHHH-----HHHCccCHhHCcCHHHHHH
Confidence            1111111 11111111111111211             125566777     9999999999999987764

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.84  E-value=1.4e-21  Score=188.55  Aligned_cols=155  Identities=21%  Similarity=0.246  Sum_probs=108.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++++++.|++.||+|||++|++||||||+|||++.++.+||+|||++.......                      ...
T Consensus       106 ~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~----------------------~~~  163 (267)
T cd05066         106 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP----------------------EAA  163 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCccccccccc----------------------cee
Confidence            3578899999999999999999999999999999999999999999998543210                      000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  |+||+              |++++|++. |..+               
T Consensus       164 ~~~~~~~~~~~y~~pe~~~---~~~~~~~~--Dv~sl--------------G~~l~ell~~g~~p---------------  209 (267)
T cd05066         164 YTTRGGKIPIRWTAPEAIA---YRKFTSAS--DVWSY--------------GIVMWEVMSYGERP---------------  209 (267)
T ss_pred             eecCCCccceeecCHhHhc---cCccCchh--hhHHH--------------HHHHHHHhcCCCCC---------------
Confidence            1112233467899999998   56788888  99999              999999553 4432               


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .++...+++     .+||+.+|.+|||+.++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         210 YWEMSNQDVIKAIEEGYRLPAPMD-------------CPAALHQLM-----LDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             cccCCHHHHHHHHhCCCcCCCCCC-------------CCHHHHHHH-----HHHcccCchhCCCHHHHHH
Confidence            211111222222222211111111             125566788     9999999999999998864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.84  E-value=8.8e-22  Score=215.15  Aligned_cols=172  Identities=24%  Similarity=0.208  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+...........      ....... .......
T Consensus       114 ~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~------l~~~~~~-s~~s~~t  186 (932)
T PRK13184        114 AFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLD------IDVDERN-ICYSSMT  186 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcceecccccccccc------ccccccc-ccccccc
Confidence            46789999999999999999999999999999999999999999999865211000000      0000000 0001112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      .....+||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.+               +.
T Consensus       187 ~~g~~vGT~~YmAPE~l~---g~~~S~kS--DIWSL--------------GVILyELLTG~~P---------------F~  232 (932)
T PRK13184        187 IPGKIVGTPDYMAPERLL---GVPASEST--DIYAL--------------GVILYQMLTLSFP---------------YR  232 (932)
T ss_pred             cCCCCCCCCCCCCHHHhc---CCCCCcHh--HHHHH--------------HHHHHHHHHCCCC---------------CC
Confidence            233468999999999987   67788888  99999              9999998776542               21


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      ..........    .....|....  ++     ...++...+++     .+||+.||++|++..+.+.+
T Consensus       233 ~~~~~ki~~~----~~i~~P~~~~--p~-----~~iP~~L~~LI-----~rcL~~DP~kR~ss~eeLl~  285 (932)
T PRK13184        233 RKKGRKISYR----DVILSPIEVA--PY-----REIPPFLSQIA-----MKALAVDPAERYSSVQELKQ  285 (932)
T ss_pred             Ccchhhhhhh----hhccChhhcc--cc-----ccCCHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            1111111100    0000111100  00     01225566777     99999999999987766644

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.84  E-value=2.1e-21  Score=187.39  Aligned_cols=157  Identities=22%  Similarity=0.243  Sum_probs=107.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|++|+||||+||+++.++.+||+|||++.........                    ...
T Consensus       106 ~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~--------------------~~~  165 (269)
T cd05065         106 IQLVGMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD--------------------PTY  165 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCccc--------------------ccc
Confidence            357889999999999999999999999999999999999999999998754321000                    000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   ...++.++  ||||+              |+++||+++ |..               |
T Consensus       166 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Dvwsl--------------G~~l~e~l~~g~~---------------p  211 (269)
T cd05065         166 TSSLGGKIPIRWTAPEAIA---YRKFTSAS--DVWSY--------------GIVMWEVMSYGER---------------P  211 (269)
T ss_pred             ccccCCCcceeecCHhHhc---cCcccchh--hhhhh--------------HHHHHHHhcCCCC---------------C
Confidence            0111112256799999987   66788888  99999              999999653 332               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+...             .....+++     .+||+.+|.+||++++++.
T Consensus       212 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~li-----~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         212 YWDMSNQDVINAIEQDYRLPPPMDC-------------PTALHQLM-----LDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             CCCCCHHHHHHHHHcCCcCCCcccC-------------CHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            2222222233333222121112111             24556777     9999999999999998875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.84  E-value=2e-21  Score=188.06  Aligned_cols=155  Identities=20%  Similarity=0.258  Sum_probs=108.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.++|+|||++.....                        ...
T Consensus       117 ~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~------------------------~~~  172 (275)
T cd05046         117 KQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYN------------------------SEY  172 (275)
T ss_pred             HHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccccccCc------------------------ccc
Confidence            45788999999999999999999999999999999999999999999874321                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......++..|+|||.+.   +..++.++  ||||+              |+++++++. +..               |
T Consensus       173 ~~~~~~~~~~~y~~PE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~~~~~---------------p  218 (275)
T cd05046         173 YKLRNALIPLRWLAPEAVQ---EDDFSTKS--DVWSF--------------GVLMWEVFTQGEL---------------P  218 (275)
T ss_pred             cccCCceeEEeecChhhhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            2233456788899999987   55677777  99999              999999765 222               1


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +............. ......+..           ...+....+++     .+||+.||.+|||+.|++.+
T Consensus       219 ~~~~~~~~~~~~~~-~~~~~~~~~-----------~~~~~~l~~~i-----~~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         219 FYGLSDEEVLNRLQ-AGKLELPVP-----------EGCPSRLYKLM-----TRCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             ccccchHHHHHHHH-cCCcCCCCC-----------CCCCHHHHHHH-----HHHcCCCcccCCCHHHHHHH
Confidence            21111112222221 111111110           11225666777     99999999999999988763

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>KOG0576|consensus

Probab=99.84  E-value=1.6e-21  Score=199.32  Aligned_cols=167  Identities=31%  Similarity=0.452  Sum_probs=127.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ++-...++.+.||+|||++|-+|||||..|||++..|.+|++|||.+..+..                         ...
T Consensus       113 qiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~gDvklaDfgvsaqita-------------------------ti~  167 (829)
T KOG0576|consen  113 QIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEGDVKLADFGVSAQITA-------------------------TIA  167 (829)
T ss_pred             HHHHHHhhhhccchhhhcCCcccccccccceeecccCceeecccCchhhhhh-------------------------hhh
Confidence            4667899999999999999999999999999999999999999999987753                         234


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ...+++||+.|||||+-.-+..+.|+..+  |||++              |++..|+-               ++.+|..
T Consensus       168 KrksfiGtpywmapEvaaverkggynqlc--diwa~--------------gitAiel~---------------eLqpplf  216 (829)
T KOG0576|consen  168 KRKSFIGTPYWMAPEVAAVERKGGYNQLC--DIWAL--------------GITAIELG---------------ELQPPLF  216 (829)
T ss_pred             hhhcccCCccccchhHHHHHhcccccccc--ccccc--------------ccchhhhh---------------hcCCccc
Confidence            67789999999999998766688999999  99999              98888753               2333333


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +......+.-..++ .+..|.......|+        +..++|+     +.+|..+|++||||+-+|.|||.....+
T Consensus       217 dlhpmr~l~LmTkS-~~qpp~lkDk~kws--------~~fh~fv-----K~altknpKkRptaeklL~h~fvs~~l~  279 (829)
T KOG0576|consen  217 DLHPMRALFLMTKS-GFQPPTLKDKTKWS--------EFFHNFV-----KGALTKNPKKRPTAEKLLQHPFVSQTLS  279 (829)
T ss_pred             ccchHHHHHHhhcc-CCCCCcccCCccch--------HHHHHHH-----HHHhcCCCccCCChhhheeceeeccchh
Confidence            33222333322222 22222222223454        6778888     9999999999999999999999876543

>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain

Probab=99.84  E-value=8.5e-21  Score=180.51  Aligned_cols=140  Identities=11%  Similarity=0.062  Sum_probs=123.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCC----CCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         313 SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRG----GSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       313 ~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~----G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      .+++.|++.+.+.|+++||.+|.||+|++.+++..+      .+++|++.|.+    |+.++||||.|.|++|+++.+..
T Consensus         3 ~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~~   82 (235)
T cd00670           3 ALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEIL   82 (235)
T ss_pred             HHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccCc
Confidence            468899999999999999999999999999988543      25899999988    89999999999999999886421


Q ss_pred             ---CCceeeEeecCccccCCCC---CCccceEEEEEEEEEcCCC-CcccHHHHHHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         383 ---IVSMKRYCIDRVFRERRVL---GFHPRELYECAFDIVTNTP-GVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       383 ---~~~~k~~y~g~vfR~~~~~---~g~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                         ..|+|+||+|+|||++..+   .+|.|||+|+|++++|.+. +..+++|++.++.++|+.+|+ ++.+.++++..
T Consensus        83 ~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~~lgl-~~~i~~~~~~~  159 (235)
T cd00670          83 SYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEPEEAEEERREWLELAEEIARELGL-PVRVVVADDPF  159 (235)
T ss_pred             cchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCHHHHHHHHHHHHHHHHHHHHHcCC-cEEEEEccChh
Confidence               4799999999999998766   5799999999999999863 457899999999999999998 69999988753

This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.84  E-value=2.3e-21  Score=182.22  Aligned_cols=157  Identities=34%  Similarity=0.475  Sum_probs=114.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.+||+.|++|+||+|.||+++.++.++|+|||.+.....                          .
T Consensus        87 ~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~--------------------------~  140 (244)
T smart00220       87 DEARFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDP--------------------------G  140 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeecc--------------------------c
Confidence            46789999999999999999999999999999999999999999999885532                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......|+..|++||.+.   ...++.+.  |+||+              |+++++++++..               |+
T Consensus       141 ~~~~~~~~~~~~~~pE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~~~~---------------p~  186 (244)
T smart00220      141 GLLTTFVGTPEYMAPEVLL---GKGYGKAV--DVWSL--------------GVILYELLTGKP---------------PF  186 (244)
T ss_pred             cccccccCCcCCCCHHHHc---cCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1334567888999999987   56777777  99999              999999766542               22


Q ss_pred             CC-chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         162 TG-SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       162 ~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .. .........+. ..........          ........+++     .+||..||++||++.++++||||
T Consensus       187 ~~~~~~~~~~~~~~-~~~~~~~~~~----------~~~~~~~~~~i-----~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      187 PGDDQLLELFKKIG-KPKPPFPPPE----------WKISPEAKDLI-----RKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             CCCCcHHHHHHHHh-ccCCCCcccc----------ccCCHHHHHHH-----HHHccCCchhccCHHHHhhCCCC
Confidence            11 11112222222 1111111110          00124556777     99999999999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.84  E-value=3.9e-21  Score=185.66  Aligned_cols=102  Identities=27%  Similarity=0.321  Sum_probs=78.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.|++.||+|||+.|++||||||+||+++.++++||+|||++......                       ....
T Consensus       101 ~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~-----------------------~~~~  157 (269)
T cd05087         101 TLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKE-----------------------DYYV  157 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCc-----------------------ceee
Confidence            45688999999999999999999999999999999999999999998643210                       0011


Q ss_pred             CCcCcccccceecccccccccc----ccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-Cc
Q psy7309          83 SHTGQVGTALYAAPELDSHGVK----AMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DR  143 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~----~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~  143 (454)
                      ......|+..|+|||++.....    ..++.++  |+||+              |+++||+++ |.
T Consensus       158 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~~--Diwsl--------------G~~l~el~~~g~  207 (269)
T cd05087         158 TPDQLWVPLRWIAPELVDEVHGNLLVVDQTKES--NVWSL--------------GVTIWELFELGS  207 (269)
T ss_pred             cCCCcCCcccccCHhHhccccccccccCCCccc--hhHHH--------------HHHHHHHHhCCC
Confidence            1233567888999999862111    2356677  99999              999999763 44

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.83  E-value=3.2e-21  Score=187.31  Aligned_cols=148  Identities=18%  Similarity=0.242  Sum_probs=102.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-------CeEEecccchhhhhhhcCCCccccccCccCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-------HVKIGDFGLATNILQKHAGPLARELTGYILPPIDS   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-------~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~   74 (454)
                      ..+.+++.||+.||+|||++||+||||||+|||++..+       .+|++|||++....                     
T Consensus       117 ~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~---------------------  175 (274)
T cd05076         117 AWKITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTAL---------------------  175 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCccccccc---------------------
Confidence            35678999999999999999999999999999997654       38999999876321                     


Q ss_pred             CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeee-cCCchhhHHHHHHH
Q psy7309          75 TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEV-YKDRPKTLEELKHN  153 (454)
Q Consensus        75 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el-~~~~~~~~~~l~~~  153 (454)
                              ......++..|+|||.+..  ...++.++  |+||+              |+++||+ +++..+        
T Consensus       176 --------~~~~~~~~~~~~aPe~~~~--~~~~~~~~--Dv~sl--------------G~~l~el~~~g~~p--------  221 (274)
T cd05076         176 --------SREERVERIPWIAPECVPG--GNSLSTAA--DKWSF--------------GTTLLEICFDGEVP--------  221 (274)
T ss_pred             --------cccccccCCcccCchhhcC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCC--------
Confidence                    1122357788999999862  25678888  99999              9999996 444431        


Q ss_pred             hhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         154 IRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       154 i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                             +...........+.  ....+|..             ..+...+++     .+||+.+|++|||+.+++++
T Consensus       222 -------~~~~~~~~~~~~~~--~~~~~~~~-------------~~~~~~~li-----~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         222 -------LKERTPSEKERFYE--KKHRLPEP-------------SCKELATLI-----SQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             -------ccccChHHHHHHHH--hccCCCCC-------------CChHHHHHH-----HHHcccChhhCcCHHHHHHh
Confidence                   11111111111111  11112221             114556777     99999999999999998863

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.83  E-value=8.1e-22  Score=189.93  Aligned_cols=154  Identities=30%  Similarity=0.429  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.|+.||+.||.|||+++++|+||+|.||+++.++.+||+|||++......                       ...
T Consensus       103 ~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~-----------------------~~~  159 (259)
T PF07714_consen  103 QQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEK-----------------------SKY  159 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTS-----------------------SSE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-----------------------ccc
Confidence            357889999999999999999999999999999999999999999999754210                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+...|+|||.+.   ...++.++  ||||+              |++++|+++ +..               |
T Consensus       160 ~~~~~~~~~~~~~aPE~~~---~~~~~~ks--DVysf--------------G~~l~ei~~~~~~---------------p  205 (259)
T PF07714_consen  160 KNDSSQQLPLRYLAPEVLK---DGEYTKKS--DVYSF--------------GMLLYEILTLGKF---------------P  205 (259)
T ss_dssp             EESTTSESGGGGS-HHHHH---HSEESHHH--HHHHH--------------HHHHHHHHTTSSG---------------T
T ss_pred             ccccccccccccccccccc---cccccccc--ccccc--------------ccccccccccccc---------------c
Confidence            1223345778899999987   56688888  99999              999999776 333               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+...             +....+++     ..||..||.+|||++++++
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~li-----~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  206 FSDYDNEEIIEKLKQGQRLPIPDNC-------------PKDIYSLI-----QQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             TTTSCHHHHHHHHHTTEETTSBTTS-------------BHHHHHHH-----HHHT-SSGGGS--HHHHHH
T ss_pred             ccccccccccccccccccceeccch-------------hHHHHHHH-----HHHcCCChhhCcCHHHHHh
Confidence            3333333334444333333333322             25566788     9999999999999998874

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.83  E-value=3e-21  Score=197.94  Aligned_cols=154  Identities=21%  Similarity=0.288  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||+.||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       239 ~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~-----------------------~~~  295 (401)
T cd05107         239 MDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRD-----------------------SNY  295 (401)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeCCCEEEEEecCcceecccc-----------------------ccc
Confidence            357889999999999999999999999999999999999999999999754211                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+++.|+|||++.   +..++.++  ||||+              |++++|+++ ++.               |
T Consensus       296 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------Gvil~e~l~~g~~---------------P  341 (401)
T cd05107         296 ISKGSTFLPLKWMAPESIF---NNLYTTLS--DVWSF--------------GILLWEIFTLGGT---------------P  341 (401)
T ss_pred             ccCCCcCCCCceeChHHhc---CCCCCcHh--HHHHH--------------HHHHHHHHHcCCC---------------C
Confidence            1122346788999999987   56678888  99999              999999664 332               2


Q ss_pred             CCCchhhhhh-hhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSL-QKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +......... ..+........|..             .+..+.+++     .+||+.||.+||+++|++.
T Consensus       342 ~~~~~~~~~~~~~~~~~~~~~~p~~-------------~~~~l~~li-----~~cl~~~P~~RPs~~ell~  394 (401)
T cd05107         342 YPELPMNEQFYNAIKRGYRMAKPAH-------------ASDEIYEIM-----QKCWEEKFEIRPDFSQLVH  394 (401)
T ss_pred             CCCCCchHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCChhHCcCHHHHHH
Confidence            2221111111 11221222222222             226677888     9999999999999998876

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.83  E-value=2.8e-21  Score=210.23  Aligned_cols=50  Identities=44%  Similarity=0.737  Sum_probs=47.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhh
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      ..+++++.||+.||+|||++|||||||||+|||++.++.+||+|||+++.
T Consensus       104 ~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~~  153 (669)
T cd05610         104 EMAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSKV  153 (669)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCcc
Confidence            35789999999999999999999999999999999999999999999873

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>KOG0984|consensus

Probab=99.83  E-value=3.1e-21  Score=172.68  Aligned_cols=99  Identities=30%  Similarity=0.489  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +-+|+..++.||.|||++ .+||||+||+|||++..|+|||||||.+..+.+                          ..
T Consensus       150 lGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~d--------------------------Si  203 (282)
T KOG0984|consen  150 LGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVD--------------------------SI  203 (282)
T ss_pred             hhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehh--------------------------hh
Confidence            457899999999999976 899999999999999999999999999886543                          22


Q ss_pred             CCcCcccccceecccccccccc-ccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          83 SHTGQVGTALYAAPELDSHGVK-AMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~-~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      ..+-..|...|||||.+..+.+ ..|+-++  |||||              |++++||..++.
T Consensus       204 Akt~daGCkpYmaPEri~~e~n~~gY~vks--DvWSL--------------GItmiElA~lr~  250 (282)
T KOG0984|consen  204 AKTMDAGCKPYMAPERINPELNQKGYSVKS--DVWSL--------------GITMIEMAILRF  250 (282)
T ss_pred             HHHHhcCCCccCChhhcCcccCcccceeeh--hhhhh--------------hhhhhhhhhccc
Confidence            3444688899999999874433 3777777  99999              999999876543

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.83  E-value=3.5e-21  Score=185.71  Aligned_cols=152  Identities=28%  Similarity=0.430  Sum_probs=110.2

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||.|||+ .|++|+||||+||+++.++.+||+|||.+.....                          
T Consensus       113 ~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~--------------------------  166 (269)
T cd08528         113 ERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIMLGEDDKVTITDFGLAKQKQP--------------------------  166 (269)
T ss_pred             HHHHHHHHHHHHHHHHhccCCceeecCCCHHHEEECCCCcEEEecccceeeccc--------------------------
Confidence            3578999999999999996 7899999999999999999999999999875421                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........|+..|+|||++.   +..++.++  |+||+              |+++|+++++.++               
T Consensus       167 ~~~~~~~~~~~~~~~Pe~~~---~~~~~~~~--Dv~sl--------------G~ll~~l~~g~~p---------------  212 (269)
T cd08528         167 ESKLTSVVGTILYSCPEIVK---NEPYGEKA--DVWAF--------------GCILYQMCTLQPP---------------  212 (269)
T ss_pred             ccccccccCcccCcChhhhc---CCCCchHH--HHHHH--------------HHHHHHHHhCCCc---------------
Confidence            11334567899999999998   56678888  99999              9999997766542               


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+.            ...++...+++     .+||+.||++|||+.|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~li-----~~cl~~~p~~Rp~~~e~~~  265 (269)
T cd08528         213 FYSTNMLSLATKIVEAVYEPLPE------------GMYSEDVTDVI-----TSCLTPDAEARPDIIQVSA  265 (269)
T ss_pred             ccccCHHHHHHHHhhccCCcCCc------------ccCCHHHHHHH-----HHHCCCCCccCCCHHHHHH
Confidence            21112222222222111111111            11225667777     9999999999999998765

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=99.82  E-value=1.7e-20  Score=180.34  Aligned_cols=151  Identities=14%  Similarity=0.102  Sum_probs=127.0

Q ss_pred             CCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEe
Q psy7309         291 NQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVT  364 (454)
Q Consensus       291 ~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~  364 (454)
                      .+...++.+++       |....+++.|++.+.++|+++||.+|.||+|++.+++..+      .+++|.+.|.+|+.++
T Consensus        17 ~~~~~G~~~~l-------P~g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~   89 (255)
T cd00779          17 RQTSSGLYSWL-------PLGLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFL   89 (255)
T ss_pred             ccCCCceEEEC-------chHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEE
Confidence            34555666666       7888899999999999999999999999999999998653      2689999999999999


Q ss_pred             eCCC----CCHHHHHHHHHcCCCCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcCCCCcccHH---HHHHHHHH
Q psy7309         365 LPHD----LRIPFARYLAQNGSIVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTNTPGVLTMG---SLRRCLMG  434 (454)
Q Consensus       365 Lr~d----~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~~~~~~~d~---e~~~~~~~  434 (454)
                      |||+    +|.+++|.++... ..|+|+||+|+|||++ +++.|  |.|||+|++++++|.+ ...+|+   |++.++.+
T Consensus        90 LrPt~e~~~t~~~~~~i~s~~-~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~-~~~a~~~~~~i~~~~~~  167 (255)
T cd00779          90 LGPTHEEVITDLVANEIKSYK-QLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDID-EESLEETYEKMYQAYSR  167 (255)
T ss_pred             EecCCcHHHHHHHHhccccHh-hCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCC-HHHHHHHHHHHHHHHHH
Confidence            9999    5555555544333 5899999999999999 88899  9999999999999987 678888   78888999


Q ss_pred             HHHhCCCCCcEEEcCcc
Q psy7309         435 SFRRFNYGNISFAPHPR  451 (454)
Q Consensus       435 ~l~~~~~~~~~i~i~~~  451 (454)
                      +|+.||+ +|.+..+++
T Consensus       168 il~~Lgl-~~~~~~~~~  183 (255)
T cd00779         168 IFKRLGL-PFVKVEADS  183 (255)
T ss_pred             HHHHcCC-cEEEEEecC
Confidence            9999999 666666544

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes.

>KOG1187|consensus

Probab=99.81  E-value=1.7e-20  Score=188.86  Aligned_cols=100  Identities=32%  Similarity=0.435  Sum_probs=83.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHcC---CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           1 MGRAWRLLREIIEGLSHIHSQG---IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         1 ~~~i~~i~~qil~gL~~LH~~g---iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      |....+|+.+++.||+|||...   ||||||||+|||+|.+.++||+|||+|+....                       
T Consensus       173 W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~-----------------------  229 (361)
T KOG1187|consen  173 WETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPE-----------------------  229 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCc-----------------------
Confidence            5677899999999999999853   99999999999999999999999999964321                       


Q ss_pred             ccCCCCCcCc-ccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          78 YSHDTSHTGQ-VGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        78 ~~~~~~~~~~-~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                       . ....... .||..|+|||.+.   .+..+.++  ||||+              |+++.|+++|+.
T Consensus       230 -~-~~~~~~~~~gt~gY~~PEy~~---~g~lt~Ks--DVySF--------------GVvllElitgr~  276 (361)
T KOG1187|consen  230 -G-DTSVSTTVMGTFGYLAPEYAS---TGKLTEKS--DVYSF--------------GVVLLELITGRK  276 (361)
T ss_pred             -c-ccceeeecCCCCccCChhhhc---cCCcCccc--ccccc--------------hHHHHHHHhCCc
Confidence             0 1111112 8999999999998   57788888  99999              999999888773

>KOG0194|consensus

Probab=99.81  E-value=3.8e-20  Score=188.82  Aligned_cols=151  Identities=23%  Similarity=0.281  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +..+++.+.++||+|||++++|||||-.+|+|++.++.+||+|||+++.-..                          ..
T Consensus       263 ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~--------------------------~~  316 (474)
T KOG0194|consen  263 EKLRFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQ--------------------------YV  316 (474)
T ss_pred             HHHHHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcc--------------------------ee
Confidence            5678899999999999999999999999999999999999999999874310                          11


Q ss_pred             CCc-CcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHT-GQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~-~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ... ...-...|+|||.+.   ...|+.++  ||||+              ||++||++..              ...|+
T Consensus       317 ~~~~~~klPirWLAPEtl~---~~~~s~kT--DV~sf--------------GV~~~Eif~~--------------g~~Py  363 (474)
T KOG0194|consen  317 MKKFLKKLPIRWLAPETLN---TGIFSFKT--DVWSF--------------GVLLWEIFEN--------------GAEPY  363 (474)
T ss_pred             eccccccCcceecChhhhc---cCcccccc--chhhe--------------eeeEEeeecc--------------CCCCC
Confidence            111 223456899999998   66899999  99999              9999998762              23377


Q ss_pred             CCchhhhhhhhh-ccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKF-QKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~-~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+........++ .++-+...|...+             .....++     ..|+..||++|||+.++.+
T Consensus       364 ~g~~~~~v~~kI~~~~~r~~~~~~~p-------------~~~~~~~-----~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  364 PGMKNYEVKAKIVKNGYRMPIPSKTP-------------KELAKVM-----KQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             CCCCHHHHHHHHHhcCccCCCCCCCH-------------HHHHHHH-----HHhccCChhhccCHHHHHH
Confidence            777777777777 3344444444322             4555666     9999999999999997764

>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain

Probab=99.80  E-value=3.4e-19  Score=175.17  Aligned_cols=143  Identities=10%  Similarity=0.039  Sum_probs=122.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      |....+++.|++.+.++|+++||.+|.||+|++.+++..+      .+++|++ +.+|+.++|||+.|.+++|+++....
T Consensus        27 p~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~-~~~~~~l~LRP~~~~~~~~~~~~~~~  105 (298)
T cd00771          27 PKGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPF-EEEDEEYGLKPMNCPGHCLIFKSKPR  105 (298)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEe-ccCCceEEEcccCCHHHHHHHHhhcc
Confidence            7788899999999999999999999999999999998642      3689999 66789999999999999999886321


Q ss_pred             ---CCceeeEeecCccccCCCCC----CccceEEEEEEEEEcCCCCcccH-HHHHHHHHHHHHhCCCCCcEEEcCccc
Q psy7309         383 ---IVSMKRYCIDRVFRERRVLG----FHPRELYECAFDIVTNTPGVLTM-GSLRRCLMGSFRRFNYGNISFAPHPRV  452 (454)
Q Consensus       383 ---~~~~k~~y~g~vfR~~~~~~----g~~rE~~Q~g~eiig~~~~~~~d-~e~~~~~~~~l~~~~~~~~~i~i~~~~  452 (454)
                         ..|+|+||+|+|||++..+.    +|.|||+|.|++++|.+....++ .|++.++.++++.+|+..+.|.+++|.
T Consensus       106 s~~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~~~e~~~~e~~e~l~~~~~~l~~lgl~~~~i~l~~~~  183 (298)
T cd00771         106 SYRDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFCTPDQIKEEIKGVLDLIKEVYSDFGFFDYKVELSTRP  183 (298)
T ss_pred             chhhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEeCCcchHHHHHHHHHHHHHHHHHcCCCcEEEEEEcCh
Confidence               57999999999999986542    68899999999999876332233 269999999999999999999999874

ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.

>KOG1095|consensus

Probab=99.80  E-value=2.9e-20  Score=202.37  Aligned_cols=155  Identities=23%  Similarity=0.309  Sum_probs=125.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+...++.||+.|++||+++++|||||-..|+|++....|||+|||+|+.+....                       -.
T Consensus       802 ~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~-----------------------yy  858 (1025)
T KOG1095|consen  802 RDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKD-----------------------YY  858 (1025)
T ss_pred             HHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhHhhhhch-----------------------he
Confidence            4678899999999999999999999999999999999999999999999554311                       11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .....-.-...|||||.+.   ...++.++  ||||+              |+++||+++              ....|+
T Consensus       859 r~~~~a~lPvkWm~PEsl~---d~iFtskS--DvWsF--------------GVllWEifs--------------lG~~PY  905 (1025)
T KOG1095|consen  859 RKHGEAMLPVKWMPPESLK---DGIFTSKS--DVWSF--------------GVLLWEIFS--------------LGATPY  905 (1025)
T ss_pred             eccCccccceecCCHHHHh---hccccccc--chhhh--------------HHHHHHHHh--------------CCCCCC
Confidence            1111123346799999998   68899999  99999              999999765              345688


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.....+.+.-+..+++...|..++             ....++|     ..||+.+|++||+...+++
T Consensus       906 ~~~~n~~v~~~~~~ggRL~~P~~CP-------------~~ly~lM-----~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  906 PSRSNFEVLLDVLEGGRLDPPSYCP-------------EKLYQLM-----LQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             CCcchHHHHHHHHhCCccCCCCCCC-------------hHHHHHH-----HHHccCChhhCccHHHHHh
Confidence            8888888887677677777777764             4445777     9999999999999998886

>KOG1026|consensus

Probab=99.80  E-value=4.2e-20  Score=194.74  Aligned_cols=154  Identities=21%  Similarity=0.266  Sum_probs=125.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+...|+.||+.|+.||-++.+|||||-..|+|++.+-.|||+|||+++.+...                       +-.
T Consensus       603 ~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYss-----------------------DYY  659 (774)
T KOG1026|consen  603 SQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSS-----------------------DYY  659 (774)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEecccccchhhhhh-----------------------hhh
Confidence            367889999999999999999999999999999999999999999999976531                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......-...|||||.|+   .++|++++  ||||+              ||++||+++..              .-|.
T Consensus       660 k~~~~t~lPIRWMppEsIl---y~kFTteS--DVWs~--------------GVvLWEIFsyG--------------~QPy  706 (774)
T KOG1026|consen  660 KVRGNTLLPIRWMPPESIL---YGKFTTES--DVWSF--------------GVVLWEIFSYG--------------KQPY  706 (774)
T ss_pred             cccCCceeeeecCCHHHhh---cCcccchh--hhhhh--------------hhhhhhhhccc--------------cCcc
Confidence            2222334467899999999   88999999  99999              99999977622              2366


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+...++.+..+.++.-..-|+.++             .+..+|+     ..||+.+|++|||+.|+-
T Consensus       707 ~glSn~EVIe~i~~g~lL~~Pe~CP-------------~~vY~LM-----~~CW~~~P~~RPsF~eI~  756 (774)
T KOG1026|consen  707 YGLSNQEVIECIRAGQLLSCPENCP-------------TEVYSLM-----LECWNENPKRRPSFKEIH  756 (774)
T ss_pred             cccchHHHHHHHHcCCcccCCCCCC-------------HHHHHHH-----HHHhhcCcccCCCHHHHH
Confidence            6666777777777666666677754             6777888     999999999999999763

>KOG1151|consensus

Probab=99.79  E-value=1.3e-19  Score=177.76  Aligned_cols=174  Identities=24%  Similarity=0.314  Sum_probs=124.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHc--CCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ--GIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~--giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      .+++.|+-||+.||.||.+.  -|||-||||.|||+..   .|.+||.|||+++.........                 
T Consensus       568 KEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~-----------------  630 (775)
T KOG1151|consen  568 KEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNS-----------------  630 (775)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCc-----------------
Confidence            36899999999999999986  4999999999999964   3679999999999765321100                 


Q ss_pred             cccCCCCCcCcccccceeccccccccc-cccccccCCccccchhhhHHHHHHHHHhcceeeee-ecCCchhhHHHHHHHh
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGV-KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAE-VYKDRPKTLEELKHNI  154 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~-~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~e-l~~~~~~~~~~l~~~i  154 (454)
                       ...........||.+|++||.+.-+. -...+.++  ||||+              |+|+|+ +|+.+|+.-+.-...|
T Consensus       631 -vdGmeLTSQgAGTYWYLPPEcFvVgkePPKIsnKV--DVWSv--------------GVIFyQClYGrKPFGhnqsQQdI  693 (775)
T KOG1151|consen  631 -VDGMELTSQGAGTYWYLPPECFVVGKEPPKISNKV--DVWSV--------------GVIFYQCLYGRKPFGHNQSQQDI  693 (775)
T ss_pred             -ccceeeecccCceeeecCcceeecCCCCCccccce--eeEee--------------ehhhhhhhccCCCCCCchhHHHH
Confidence             01223345679999999999986321 24567888  99999              999999 4554443222222222


Q ss_pred             hhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         155 RRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       155 ~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      ...+             -+.+.....||..           ..++++++.||     ++||++.-++|....|+.+||||
T Consensus       694 LqeN-------------TIlkAtEVqFP~K-----------PvVsseAkaFI-----RRCLaYRKeDR~DV~qLA~dpyl  744 (775)
T KOG1151|consen  694 LQEN-------------TILKATEVQFPPK-----------PVVSSEAKAFI-----RRCLAYRKEDRIDVQQLACDPYL  744 (775)
T ss_pred             Hhhh-------------chhcceeccCCCC-----------CccCHHHHHHH-----HHHHHhhhhhhhhHHHHccCccc
Confidence            2100             1122334455554           23568899999     99999999999999999999999


Q ss_pred             ccCC
Q psy7309         235 LEGS  238 (454)
Q Consensus       235 ~~~~  238 (454)
                      ...-
T Consensus       745 lPh~  748 (775)
T KOG1151|consen  745 LPHI  748 (775)
T ss_pred             cchh
Confidence            8643

>TIGR00418 thrS threonyl-tRNA synthetase

Probab=99.79  E-value=1e-18  Score=186.84  Aligned_cols=141  Identities=10%  Similarity=0.005  Sum_probs=123.9

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      |....+++.|++.++++|.++||.+|.||+|++.+++..+      .++||.|.|.+|+.++|||+.|++++|.++.+..
T Consensus       197 p~g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~  276 (563)
T TIGR00418       197 PKGATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLR  276 (563)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCC
Confidence            7888899999999999999999999999999999998653      3689999999999999999999999999887542


Q ss_pred             ---CCceeeEeecCccccCCCCC----CccceEEEEEEEEEcCCCCcccHHH---HHHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         383 ---IVSMKRYCIDRVFRERRVLG----FHPRELYECAFDIVTNTPGVLTMGS---LRRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       383 ---~~~~k~~y~g~vfR~~~~~~----g~~rE~~Q~g~eiig~~~~~~~d~e---~~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                         ..|+|+||+|+|||++..+.    +|.|||+|.|++++|..  ..+++|   ++.++.++++.||+..+.+++|.+
T Consensus       277 s~~~lP~rl~~~g~~fR~E~~g~~~Gl~R~reF~q~~~~~~~~~--~~~~~e~~~~i~~~~~~~~~lgl~~~~~~l~~~  353 (563)
T TIGR00418       277 SYRDLPLRIAELGYSHRYEQSGELHGLMRVRGFTQDDAHIFCTE--DQIKEEFKNQFRLIQKVYSDFGFSFDKYELSTR  353 (563)
T ss_pred             ChHHCCceeeEeccccCCCCCcCCcCcccccceEEeeeEEEcCH--HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence               36999999999999984321    39999999999999973  456666   999999999999998888888864

This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether..

>PRK09194 prolyl-tRNA synthetase; Provisional

Probab=99.77  E-value=1.4e-18  Score=185.04  Aligned_cols=156  Identities=12%  Similarity=0.074  Sum_probs=132.7

Q ss_pred             HhCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCe
Q psy7309         289 CFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSI  362 (454)
Q Consensus       289 ~f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~  362 (454)
                      ++.+...++.+++       |..+.++++|++.+++.|+++||.+|.||.|++.+++..+      .+++|+|.|++|+.
T Consensus        31 ~i~~~~~G~~~~l-------P~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~  103 (565)
T PRK09194         31 YIRKLASGIYTYL-------PLGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRD  103 (565)
T ss_pred             CccccCCCeeEEC-------ccHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCE
Confidence            4455556666666       8888899999999999999999999999999999998654      26799999999999


Q ss_pred             EeeCCCCCHHHHHHHHHc---CCCCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcCCCCcccHH---HHHHHHH
Q psy7309         363 VTLPHDLRIPFARYLAQN---GSIVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTNTPGVLTMG---SLRRCLM  433 (454)
Q Consensus       363 ~~Lr~d~T~p~aR~~a~~---~~~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~~~~~~~d~---e~~~~~~  433 (454)
                      ++|||..+.+++.+++..   ...+|+|+||+|++||++ +++.|  |.|||+|.+++++|.+ ...+|+   +++.++.
T Consensus       104 l~LrPt~e~~~~~~~~~~~~s~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~-~~~a~~~~~~~~~~~~  182 (565)
T PRK09194        104 FVLGPTHEEVITDLVRNEIKSYKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHAD-EESLDETYDAMYQAYS  182 (565)
T ss_pred             EEECCCChHHHHHHHHhhhhhcccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCC-hHHHHHHHHHHHHHHH
Confidence            999997777766655532   225799999999999999 89999  9999999999999987 777887   5667779


Q ss_pred             HHHHhCCCCCcEEEcCcccc
Q psy7309         434 GSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       434 ~~l~~~~~~~~~i~i~~~~~  453 (454)
                      ++|+.||+ +|.+.+++++.
T Consensus       183 ~i~~~lgl-~~~~~~~~~g~  201 (565)
T PRK09194        183 RIFDRLGL-DFRAVEADSGA  201 (565)
T ss_pred             HHHHHhCC-ccEEEEccccc
Confidence            99999999 89999888764

>KOG0590|consensus

Probab=99.76  E-value=5.7e-19  Score=188.10  Aligned_cols=175  Identities=24%  Similarity=0.232  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++-.+++|++.|++|+|++||.||||||+|+++..+|.+||+|||.+..+.....                     ...
T Consensus       420 ~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e---------------------~~~  478 (601)
T KOG0590|consen  420 LEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWE---------------------KNI  478 (601)
T ss_pred             hhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcc---------------------hhh
Confidence            35678999999999999999999999999999999999999999999885532110                     112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+.+|+..|+|||++.   +..|+... .||||.              |+++..|..++.........         
T Consensus       479 ~~~~g~~gS~pY~apE~~~---~~~ydpr~-vDiwS~--------------~ii~~~m~~~~~~Wk~a~~~---------  531 (601)
T KOG0590|consen  479 HESSGIVGSDPYLAPEVLT---GKEYDPRA-VDVWSC--------------GIIYICMILGRFPWKVAKKS---------  531 (601)
T ss_pred             hhhcCcccCCcCcCccccc---ccccCcch-hhhhhc--------------cceEEEEecCCCcccccccc---------
Confidence            4566789999999999998   77887764 599999              99999987765422111000         


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                        .+.   +................ .-|.     ......+.+|     .+||+.||.+|.|++++++.+||++...+
T Consensus       532 --~~~---~~~~~~~~~~~~~~~~~-~~~~-----~lp~~~~~~~-----~~~l~~~P~~R~ti~~i~~d~W~~~i~~c  594 (601)
T KOG0590|consen  532 --DNS---FKTNNYSDQRNIFEGPN-RLLS-----LLPRETRIII-----YRMLQLDPTKRITIEQILNDEWIRSIECC  594 (601)
T ss_pred             --ccc---hhhhccccccccccChH-HHHH-----hchhhHHHHH-----HHHccCChhheecHHHHhhChHhhhcceE
Confidence              000   00000000000000000 0111     1124455667     99999999999999999999999976654

>KOG4257|consensus

Probab=99.76  E-value=2.3e-19  Score=182.28  Aligned_cols=151  Identities=19%  Similarity=0.197  Sum_probs=122.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      ...+++||+.||+|||++++|||||...|||+....-|||+|||+++.+.+..                        .-.
T Consensus       493 L~ly~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~------------------------yYk  548 (974)
T KOG4257|consen  493 LTLYCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDA------------------------YYK  548 (974)
T ss_pred             HHHHHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccc------------------------hhh
Confidence            45689999999999999999999999999999999999999999999764311                        111


Q ss_pred             CcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCC
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTG  163 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~  163 (454)
                      .+...-..-|||||.+.   -..++..+  |||-+              |+++||++.              ....||.+
T Consensus       549 aS~~kLPIKWmaPESIN---fRrFTtAS--DVWMF--------------gVCmWEIl~--------------lGvkPfqg  595 (974)
T KOG4257|consen  549 ASRGKLPIKWMAPESIN---FRRFTTAS--DVWMF--------------GVCMWEILS--------------LGVKPFQG  595 (974)
T ss_pred             ccccccceeecCccccc---hhcccchh--hHHHH--------------HHHHHHHHH--------------hcCCcccc
Confidence            11223356799999998   67888888  99999              999999443              22346777


Q ss_pred             chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         164 SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      -...+.+..++++.+.+.|+.++             +.+..++     .+||.+||.+||+..|+.
T Consensus       596 vkNsDVI~~iEnGeRlP~P~nCP-------------p~LYslm-----skcWayeP~kRPrftei~  643 (974)
T KOG4257|consen  596 VKNSDVIGHIENGERLPCPPNCP-------------PALYSLM-----SKCWAYEPSKRPRFTEIK  643 (974)
T ss_pred             ccccceEEEecCCCCCCCCCCCC-------------hHHHHHH-----HHHhccCcccCCcHHHHH
Confidence            67777888888899988888865             6677788     999999999999988764

>KOG4250|consensus

Probab=99.76  E-value=2.1e-19  Score=185.70  Aligned_cols=98  Identities=32%  Similarity=0.506  Sum_probs=83.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc--CCC--eEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY--EDH--VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~--~~~--vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ++..++..+..||.|||++||+||||||+||++-.  +|+  .||+|||.|+.+.                         
T Consensus       121 e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~-------------------------  175 (732)
T KOG4250|consen  121 EFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELD-------------------------  175 (732)
T ss_pred             HHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCC-------------------------
Confidence            57788999999999999999999999999999843  233  6999999999763                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                       .+...++.+||+.|.+||+.-+  ...|+..+  |.||+              ||++|++.+|..
T Consensus       176 -d~s~~~S~vGT~~YLhPel~E~--q~~y~~tV--DLWS~--------------GvtlY~caTG~l  222 (732)
T KOG4250|consen  176 -DNSLFTSLVGTEEYLHPELYER--QKKYTATV--DLWSF--------------GVTLYECATGEL  222 (732)
T ss_pred             -CCCeeeeecCchhhcChHHHhh--ccCcCcee--ehhhh--------------hhHHHHHhccCC
Confidence             3457888999999999999872  47899999  99999              999999877553

>KOG0200|consensus

Probab=99.76  E-value=6e-19  Score=189.63  Aligned_cols=154  Identities=25%  Similarity=0.336  Sum_probs=116.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+...++.||+.|++||++..+|||||-..|||+..+..+||+|||+|+.....                        ..
T Consensus       418 ~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~------------------------~~  473 (609)
T KOG0200|consen  418 KDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNK------------------------DY  473 (609)
T ss_pred             HHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCCCEEEEccccceeccCCC------------------------Cc
Confidence            357889999999999999999999999999999999999999999999854221                        01


Q ss_pred             CCCcCccc--ccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVG--TALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~g--T~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      -......|  ...|||||.+.   ...|+.++  ||||+              |+++||+++              ....
T Consensus       474 y~~~~~~~~LP~kWmApEsl~---~~~ft~kS--DVWSf--------------GI~L~Eifs--------------LG~~  520 (609)
T KOG0200|consen  474 YRTKSSAGTLPVKWMAPESLF---DRVFTSKS--DVWSF--------------GILLWEIFT--------------LGGT  520 (609)
T ss_pred             eEecCCCCccceeecCHHHhc---cCcccccc--hhhHH--------------HHHHHHHhh--------------CCCC
Confidence            11111222  34499999998   67899999  99999              999999765              2334


Q ss_pred             CCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         160 PSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       160 p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      |+++.. ....+..+..+.+...|....             ++.-+++     +.||+.+|++||+..|+..
T Consensus       521 PYp~~~~~~~l~~~l~~G~r~~~P~~c~-------------~eiY~iM-----~~CW~~~p~~RP~F~~~~~  574 (609)
T KOG0200|consen  521 PYPGIPPTEELLEFLKEGNRMEQPEHCS-------------DEIYDLM-----KSCWNADPEDRPTFSECVE  574 (609)
T ss_pred             CCCCCCcHHHHHHHHhcCCCCCCCCCCC-------------HHHHHHH-----HHHhCCCcccCCCHHHHHH
Confidence            555533 444455555566666666632             5666777     9999999999999997664

>KOG0196|consensus

Probab=99.75  E-value=9.1e-19  Score=182.05  Aligned_cols=153  Identities=20%  Similarity=0.234  Sum_probs=121.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ++.-+++.|+.|++||-++|+|||||...|||++.+-.+|++|||+++.+.+..                        ..
T Consensus       732 QLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~------------------------~~  787 (996)
T KOG0196|consen  732 QLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP------------------------EA  787 (996)
T ss_pred             hHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeecccCC------------------------Cc
Confidence            567789999999999999999999999999999999999999999999664311                        11


Q ss_pred             CCcCc--ccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQ--VGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~--~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ..++.  .-...|.|||.+.   ..+++..+  |+||+              |+++||++.              ...-|
T Consensus       788 ~ytt~GGKIPiRWTAPEAIa---~RKFTsAS--DVWSy--------------GIVmWEVmS--------------yGERP  834 (996)
T KOG0196|consen  788 AYTTLGGKIPIRWTAPEAIA---YRKFTSAS--DVWSY--------------GIVMWEVMS--------------YGERP  834 (996)
T ss_pred             cccccCCccceeecChhHhh---hcccCchh--hcccc--------------ceEEEEecc--------------cCCCc
Confidence            11111  2246799999999   78888888  99999              999999544              12237


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.++..++.++.++.+-+.+.|-+++             ..++.|+     ..||++|-.+||+..|++.
T Consensus       835 YWdmSNQdVIkaIe~gyRLPpPmDCP-------------~aL~qLM-----ldCWqkdR~~RP~F~qiV~  886 (996)
T KOG0196|consen  835 YWDMSNQDVIKAIEQGYRLPPPMDCP-------------AALYQLM-----LDCWQKDRNRRPKFAQIVS  886 (996)
T ss_pred             ccccchHHHHHHHHhccCCCCCCCCc-------------HHHHHHH-----HHHHHHHhhcCCCHHHHHH
Confidence            78888888888888666555555543             6677888     9999999999999997764

>KOG0199|consensus

Probab=99.75  E-value=8.5e-19  Score=180.18  Aligned_cols=163  Identities=19%  Similarity=0.255  Sum_probs=127.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ..-.++.||+.|+.||..+++|||||-..|+|+.....||||||||.+.+....                      ..+.
T Consensus       213 ~Lcdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ne----------------------d~Yv  270 (1039)
T KOG0199|consen  213 RLCDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENE----------------------DMYV  270 (1039)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCC----------------------cceE
Confidence            456789999999999999999999999999999999999999999999764311                      1111


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......-...|+|||.+.   ...++.++  |+|++              |+++|||++..              ..|..
T Consensus       271 m~p~rkvPfAWCaPEsLr---h~kFShaS--DvWmy--------------GVTiWEMFtyG--------------EePW~  317 (1039)
T KOG0199|consen  271 MAPQRKVPFAWCAPESLR---HRKFSHAS--DVWMY--------------GVTIWEMFTYG--------------EEPWV  317 (1039)
T ss_pred             ecCCCcCcccccCHhHhc---cccccccc--hhhhh--------------hhhHHhhhccC--------------CCCCC
Confidence            222233356799999998   67888888  99999              99999988733              24666


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      +.....+++++..+....-|+.++             .+..+++     +.||.++|.+|||+..+.+.-+..+..
T Consensus       318 G~~g~qIL~~iD~~erLpRPk~cs-------------edIY~im-----k~cWah~paDRptFsair~~~~l~eaq  375 (1039)
T KOG0199|consen  318 GCRGIQILKNIDAGERLPRPKYCS-------------EDIYQIM-----KNCWAHNPADRPTFSAIREDLVLAEAQ  375 (1039)
T ss_pred             CCCHHHHHHhccccccCCCCCCCh-------------HHHHHHH-----HHhccCCccccccHHHHHHhHHHHhcC
Confidence            777777888888666666666643             6667777     999999999999999886554444433

>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II

Probab=99.74  E-value=1.4e-17  Score=176.28  Aligned_cols=154  Identities=12%  Similarity=0.081  Sum_probs=131.8

Q ss_pred             HhCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCe
Q psy7309         289 CFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSI  362 (454)
Q Consensus       289 ~f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~  362 (454)
                      +..+...+..+++       |..+.++++|++.+++.+.++||++|.+|.|++.+++..+      .+++|+|.|+.|+.
T Consensus        31 ~i~~~~~G~~~~l-------P~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~  103 (568)
T TIGR00409        31 FIRRLGSGLYNWL-------PLGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGRE  103 (568)
T ss_pred             CccccCCceEEEC-------ChHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCE
Confidence            3344555566666       8888899999999999999999999999999999988653      36899999999999


Q ss_pred             EeeCCC----CCHHHHHHHHHcCCCCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcCCCCcccHHHHHHH---H
Q psy7309         363 VTLPHD----LRIPFARYLAQNGSIVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTNTPGVLTMGSLRRC---L  432 (454)
Q Consensus       363 ~~Lr~d----~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~~~~~~~d~e~~~~---~  432 (454)
                      ++|||+    +|..++|.+.... .+|+|+||+|++||++ +++.|  |.|||+|.+++++|.+ ...+++|...+   .
T Consensus       104 l~LrPT~Ee~~t~~~~~~i~syr-~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~-~~~a~~e~~~~~~~y  181 (568)
T TIGR00409       104 FVLGPTHEEVITDLARNEIKSYK-QLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSD-EESLDATYQKMYQAY  181 (568)
T ss_pred             EEEcCCCcHHHHHHHHHHHhhcc-ccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCC-hHHHHHHHHHHHHHH
Confidence            999997    9988888887654 6899999999999998 88889  9999999999999998 77888888755   5


Q ss_pred             HHHHHhCCCCCcEEEcCccc
Q psy7309         433 MGSFRRFNYGNISFAPHPRV  452 (454)
Q Consensus       433 ~~~l~~~~~~~~~i~i~~~~  452 (454)
                      .++|++||+ +|.+..++++
T Consensus       182 ~~if~~LgL-~~~~v~~~~g  200 (568)
T TIGR00409       182 SNIFSRLGL-DFRPVQADSG  200 (568)
T ss_pred             HHHHHHhCC-cceEEEeccc
Confidence            899999999 6777665553

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi.

>PRK12444 threonyl-tRNA synthetase; Reviewed

Probab=99.74  E-value=2e-17  Score=178.89  Aligned_cols=168  Identities=8%  Similarity=0.016  Sum_probs=137.6

Q ss_pred             HhcCCCChhHHHHHHH----HhCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc
Q psy7309         273 TLSNPQSKGYKYLVAA----CFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT  348 (454)
Q Consensus       273 ~~~~~~s~~~~~~~~~----~f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~  348 (454)
                      .++.......+.+...    .|.+..+++.+++       |....+++.|.+.+.+.+.++||.+|.||.|++.+++..+
T Consensus       238 ~~~~~~~~dH~~l~~~~~l~~~~~~~~G~~~~~-------p~g~~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~s  310 (639)
T PRK12444        238 FVEEAAKRNHRKLGKELELFMFSEEAPGMPFYL-------PKGQIIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERS  310 (639)
T ss_pred             HHHHhccCCHHHHHHHcCCcccccccCcceEEe-------eCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhc
Confidence            3344444445555555    3455666667666       7778889999999999999999999999999999998654


Q ss_pred             ------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCCCC--C--ccceEEEEEEEE
Q psy7309         349 ------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRVLG--F--HPRELYECAFDI  415 (454)
Q Consensus       349 ------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~~~--g--~~rE~~Q~g~ei  415 (454)
                            .+++| +.|.+|+.++|||..|++++|.++....   ..|+|+|++|+|||+++++.  |  |.|||+|.|+++
T Consensus       311 G~~~~~~~emy-~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~LP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~~  389 (639)
T PRK12444        311 GHWDHYKDNMY-FSEVDNKSFALKPMNCPGHMLMFKNKLHSYRELPIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAHL  389 (639)
T ss_pred             CChhhhhhhcC-eecCCCcEEEEccCCCHHHHHHHhCcccChhhCCceeEEeccccCCCCCcCCcCcceeeeeEEccEEE
Confidence                  26899 8899999999999999999999864321   46999999999999998754  7  999999999999


Q ss_pred             EcCCCCcccHHH---HHHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         416 VTNTPGVLTMGS---LRRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       416 ig~~~~~~~d~e---~~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                      +|.. .. +++|   ++.++.++++.||+ +|.+.+++|
T Consensus       390 f~~~-~~-~~~e~~~~~~~~~~i~~~lgl-~~~~~~~~r  425 (639)
T PRK12444        390 FVTP-DQ-IEDEIKSVMAQIDYVYKTFGF-EYEVELSTR  425 (639)
T ss_pred             ECCH-HH-HHHHHHHHHHHHHHHHHHcCC-cEEEEEECC
Confidence            9876 33 6777   89999999999999 699988765

>KOG4278|consensus

Probab=99.73  E-value=2.1e-18  Score=175.01  Aligned_cols=151  Identities=23%  Similarity=0.267  Sum_probs=120.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      ...++.||.+|+.||..+++|||||...|+|+..+..||++|||+++....                        ...+.
T Consensus       367 LlyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtg------------------------DTYTA  422 (1157)
T KOG4278|consen  367 LLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTG------------------------DTYTA  422 (1157)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcC------------------------Cceec
Confidence            457889999999999999999999999999999999999999999997642                        22333


Q ss_pred             CcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCC
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTG  163 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~  163 (454)
                      +.+..-..-|.|||.+.   ...++.++  |||++              |+++||+.+              ..-.|+++
T Consensus       423 HAGAKFPIKWTAPEsLA---yNtFSiKS--DVWAF--------------GVLLWEIAT--------------YGMsPYPG  469 (1157)
T KOG4278|consen  423 HAGAKFPIKWTAPESLA---YNTFSIKS--DVWAF--------------GVLLWEIAT--------------YGMSPYPG  469 (1157)
T ss_pred             ccCccCcccccCccccc---ccccccch--hhHHH--------------HHHHHHHHh--------------cCCCCCCC
Confidence            44444456799999998   66677777  99999              999999644              22346666


Q ss_pred             chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         164 SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      -.......-++++-+..-|+.++             +....|+     +.||+|+|.+||+.+|+-
T Consensus       470 idlSqVY~LLEkgyRM~~PeGCP-------------pkVYeLM-----raCW~WsPsDRPsFaeiH  517 (1157)
T KOG4278|consen  470 IDLSQVYGLLEKGYRMDGPEGCP-------------PKVYELM-----RACWNWSPSDRPSFAEIH  517 (1157)
T ss_pred             ccHHHHHHHHhccccccCCCCCC-------------HHHHHHH-----HHHhcCCcccCccHHHHH
Confidence            66666666677677777777754             6667888     999999999999988764

>PRK14799 thrS threonyl-tRNA synthetase; Provisional

Probab=99.73  E-value=8.6e-18  Score=176.21  Aligned_cols=181  Identities=10%  Similarity=0.010  Sum_probs=142.8

Q ss_pred             hHHHHHHHHHHhcCCCChhHHHHHHH--HhCC---CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCC
Q psy7309         263 ETVLQDMVRQTLSNPQSKGYKYLVAA--CFNQ---KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTP  337 (454)
Q Consensus       263 ~~~~~~~~~~~~~~~~s~~~~~~~~~--~f~q---~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp  337 (454)
                      .+++++.+. .++.......+.+...  +|.-   ..+++.+++       |..+.+++.|.+.+++++.++||.+|.||
T Consensus       122 ~~~l~~~~~-~~eea~~rdHr~lg~~l~lf~~~~~~~~G~~~~l-------P~G~~i~~~L~~~~r~~~~~~Gy~eV~TP  193 (545)
T PRK14799        122 EEQLKDYLT-WLEKAEETDHRLIGEKLDLFSFHEEAGSGLVLFH-------PKGQTIRNELIAFMREINDSMGYQEVYTS  193 (545)
T ss_pred             HHHHHHHHH-HHHhcccCCHHHHHHHcCCcccccccCCcceEEc-------ChHHHHHHHHHHHHHHHHHHcCCeEEECC
Confidence            344444444 3333333444444433  3322   244555555       88889999999999999999999999999


Q ss_pred             Cccccccccccc------cccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCCCC----Cc
Q psy7309         338 LLTPLNSLTATS------ETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRVLG----FH  404 (454)
Q Consensus       338 ~le~~~~~~~~~------~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~~~----g~  404 (454)
                      .++..+++..++      ++||.+ |.+|+.++|||+.|+|++|+++.+..   .+|+|+|++|+|||++.++.    +|
T Consensus       194 ~i~~~eL~k~SGh~~~y~~~mf~~-~~~~e~~~LrPm~cp~~~~~~~~~~~SyrdLPlR~~e~g~vfR~E~sg~l~GL~R  272 (545)
T PRK14799        194 HVFKTDIWKISGHYTLYRDKLIVF-NMEGDEYGVKPMNCPAHILIYKSKPRTYRDLPIRFSEFGHVYRWEKKGELYGLLR  272 (545)
T ss_pred             ccchHHHHhhccccccchhhccee-eccCceEEeccCCCHHHHHHHhccccChhhCCHhhEEecceecCCCCCCcccccc
Confidence            999999876532      578887 88899999999999999999886432   47999999999999998877    89


Q ss_pred             cceEEEEEEEEEcCCCCcccHH-HHHHHHHHHHHhCCCC--CcEEEcCccc
Q psy7309         405 PRELYECAFDIVTNTPGVLTMG-SLRRCLMGSFRRFNYG--NISFAPHPRV  452 (454)
Q Consensus       405 ~rE~~Q~g~eiig~~~~~~~d~-e~~~~~~~~l~~~~~~--~~~i~i~~~~  452 (454)
                      .|||+|++++|+|..+...+|+ |++.++.++++.+|++  ++.+.+++|.
T Consensus       273 vReF~Q~DaHif~~~~q~~~E~~~~l~~i~~vy~~fG~~~~~~~i~ls~Rp  323 (545)
T PRK14799        273 VRGFVQDDGHIFLREDQLREEIKMLISKTVEVWHKFGFKDDDIKPYLSTRP  323 (545)
T ss_pred             ceeEEEcccEEEeCHHHHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEcCh
Confidence            9999999999999873344777 8999999999999995  6999998874

>KOG1345|consensus

Probab=99.73  E-value=6.8e-18  Score=156.89  Aligned_cols=162  Identities=20%  Similarity=0.181  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC--CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~--~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++++.|+++||.|+|++++||||||.+|||+-..+  .|||||||+++..+.                           
T Consensus       123 ~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~---------------------------  175 (378)
T KOG1345|consen  123 TKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDADFYRVKLCDFGLTRKVGT---------------------------  175 (378)
T ss_pred             HHHHHHHHHHHHHHhhccchhhcccccceEEEecCCccEEEeeecccccccCc---------------------------
Confidence            478999999999999999999999999999996543  799999999875431                           


Q ss_pred             CCCcCcccccceeccccccccccccc--cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY--NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~--~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                       .....--+..|.+||+...-.++.|  +...  |+|.+              |+++|.+++|.++.....         
T Consensus       176 -tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~--D~Wqf--------------GIi~f~cltG~~PWQka~---------  229 (378)
T KOG1345|consen  176 -TVKYLEYVNNYHAPELCDTVVNEKLVVNPST--DIWQF--------------GIIFFYCLTGKFPWQKAS---------  229 (378)
T ss_pred             -eehhhhhhcccCCcHHHhhccccceEecccc--cchhe--------------eeeeeeeecCCCcchhhh---------
Confidence             1111233557899998754334444  4455  99999              999999998887554221         


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCC---CChhhhhcCcccc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKR---PSSEQNLCQPISL  235 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~R---pta~e~l~hp~f~  235 (454)
                       .. ........++.+...+..|..+..|          ++.+..+.     ++-|.++|++|   .++......-|..
T Consensus       230 -~~-d~~Y~~~~~w~~rk~~~~P~~F~~f----------s~~a~r~F-----kk~lt~~~~drcki~~~kk~rk~~w~E  291 (378)
T KOG1345|consen  230 -IM-DKPYWEWEQWLKRKNPALPKKFNPF----------SEKALRLF-----KKSLTPRFKDRCKIWTAKKMRKCLWKE  291 (378)
T ss_pred             -cc-CchHHHHHHHhcccCccCchhhccc----------CHHHHHHH-----HHhcCCcccccchhHHHHHHHHHHHHH
Confidence             00 1111233445555666777775332          25566666     99999999999   6666666666654

>KOG3653|consensus

Probab=99.72  E-value=1.7e-18  Score=171.68  Aligned_cols=170  Identities=22%  Similarity=0.312  Sum_probs=107.8

Q ss_pred             ChhHHHHHHHHHHHHHHHHHc---------CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCC
Q psy7309           1 MGRAWRLLREIIEGLSHIHSQ---------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPP   71 (454)
Q Consensus         1 ~~~i~~i~~qil~gL~~LH~~---------giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~   71 (454)
                      |.+..+++..++.||+|||+.         .|+|||||..|||+..++++.|+|||+|..+...                
T Consensus       306 w~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~----------------  369 (534)
T KOG3653|consen  306 WNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPG----------------  369 (534)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCC----------------
Confidence            467889999999999999963         5999999999999999999999999999876421                


Q ss_pred             CCCCCcccCCCCCcCcccccceecccccccccccccc-----ccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh
Q psy7309          72 IDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYN-----QFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT  146 (454)
Q Consensus        72 ~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~-----~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~  146 (454)
                             .......+.+||..|||||++-.  ...+.     ...  ||||+              |.++||+.+.=...
T Consensus       370 -------~~~~d~~~qVGT~RYMAPEvLEg--ainl~d~~Afkr~--DvYam--------------gLVLWEi~SRC~~~  424 (534)
T KOG3653|consen  370 -------KPQGDTHGQVGTRRYMAPEVLEG--AINLQDRDAFKRI--DVYAM--------------GLVLWEIASRCTDA  424 (534)
T ss_pred             -------CCCcchhhhhhhhhhcCHHHHhh--hcccccHHHHHHH--HHHHH--------------HHHHHHHHhhcccc
Confidence                   11223334899999999999861  11122     235  99999              99999965411000


Q ss_pred             HHHHHHHhhhcCCCCCC----ch-hhhhhh-hhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCC
Q psy7309         147 LEELKHNIRRENGPSTG----SN-VQKSLQ-KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPS  220 (454)
Q Consensus       147 ~~~l~~~i~~~~~p~~~----~~-~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~  220 (454)
                      .-   ....+...||..    .+ ..+... .+.+..++.+|..     |..   ...-.-+.+.+     .-||.+||+
T Consensus       425 ~~---~~vp~Yqlpfe~evG~hPt~e~mq~~VV~kK~RP~~p~~-----W~~---h~~~~~l~et~-----EeCWDhDae  488 (534)
T KOG3653|consen  425 DP---GPVPEYQLPFEAEVGNHPTLEEMQELVVRKKQRPKIPDA-----WRK---HAGMAVLCETI-----EECWDHDAE  488 (534)
T ss_pred             cC---CCCCcccCchhHHhcCCCCHHHHHHHHHhhccCCCChhh-----hhc---CccHHHHHHHH-----HHHcCCchh
Confidence            00   000011112211    01 111111 1223455555544     321   12224556677     999999999


Q ss_pred             CCCChhh
Q psy7309         221 KRPSSEQ  227 (454)
Q Consensus       221 ~Rpta~e  227 (454)
                      .|.||.=
T Consensus       489 ARLTA~C  495 (534)
T KOG3653|consen  489 ARLTAGC  495 (534)
T ss_pred             hhhhhHH
Confidence            9999863

>KOG2052|consensus

Probab=99.71  E-value=4.4e-18  Score=167.55  Aligned_cols=170  Identities=21%  Similarity=0.301  Sum_probs=109.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHc--------CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ--------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID   73 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~--------giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~   73 (454)
                      +...+++..+++||+|||-.        .|.|||||..|||+..++.+.|+|+|||........                
T Consensus       308 ~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~----------------  371 (513)
T KOG2052|consen  308 EGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTD----------------  371 (513)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCC----------------
Confidence            35788999999999999953        499999999999999999999999999986543211                


Q ss_pred             CCCcccCCCCCcCcccccceeccccccccc-cccccccCCccccchhhhHHHHHHHHHhcceeeeeecC----CchhhHH
Q psy7309          74 STAFYSHDTSHTGQVGTALYAAPELDSHGV-KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK----DRPKTLE  148 (454)
Q Consensus        74 ~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~-~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~----~~~~~~~  148 (454)
                           .-+...+..+||..|||||++...- ...++..-.+||||+              |.++||+..    |...   
T Consensus       372 -----~idi~~N~rVGTKRYMAPEvLdetin~~~Fesyk~ADIYaf--------------gLVlWEiarRc~~ggi~---  429 (513)
T KOG2052|consen  372 -----TIDIPPNPRVGTKRYMAPEVLDETINMKHFESYKRADIYAF--------------GLVLWEIARRCESGGIV---  429 (513)
T ss_pred             -----cccCCCCCccceeeccChHHhhhhcChhhhhhhhHHHHHHH--------------HHHHHHHHHHhhcCCEe---
Confidence                 2345567789999999999985211 223444334599999              666666321    1111   


Q ss_pred             HHHHHhhhcCCCCCC-----chhhhhhhhhcc-CCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCC
Q psy7309         149 ELKHNIRRENGPSTG-----SNVQKSLQKFQK-SPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKR  222 (454)
Q Consensus       149 ~l~~~i~~~~~p~~~-----~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~R  222 (454)
                            .+...|+.+     .+..+..+-+.- .-++.+|..     |+.      .+.+..+.  ++|+-||..||.-|
T Consensus       430 ------eey~~Pyyd~Vp~DPs~eeMrkVVCv~~~RP~ipnr-----W~s------~~~l~~m~--klMkeCW~~Np~aR  490 (513)
T KOG2052|consen  430 ------EEYQLPYYDVVPSDPSFEEMRKVVCVQKLRPNIPNR-----WKS------DPALRVMA--KLMKECWYANPAAR  490 (513)
T ss_pred             ------hhhcCCcccCCCCCCCHHHHhcceeecccCCCCCcc-----ccc------CHHHHHHH--HHHHHhhcCCchhh
Confidence                  122233322     233333333331 222333332     432      13333332  66699999999999


Q ss_pred             CChhhh
Q psy7309         223 PSSEQN  228 (454)
Q Consensus       223 pta~e~  228 (454)
                      .||--+
T Consensus       491 ltALri  496 (513)
T KOG2052|consen  491 LTALRI  496 (513)
T ss_pred             hHHHHH
Confidence            998643

>TIGR02367 PylS pyrrolysyl-tRNA synthetase

Probab=99.71  E-value=5.3e-17  Score=162.29  Aligned_cols=127  Identities=13%  Similarity=0.115  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHHHHHHhcCCccccCCCcc---cccccccc-----ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC--
Q psy7309         313 SLLESTGDKLRRIFQLHGGAHFQTPLLT---PLNSLTAT-----SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS--  382 (454)
Q Consensus       313 ~~~~~i~~~l~~~f~~~G~~~i~tp~le---~~~~~~~~-----~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~--  382 (454)
                      .-.+++++.++++|..+||.+|.||+|+   .++.+...     .+.+|++    ++.++||||+|++++|+++.+..  
T Consensus       240 ~~~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~----ee~lvLRPdLTPsLaR~La~N~~~l  315 (453)
T TIGR02367       240 DYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV----DKNFCLRPMLAPNLYNYLRKLDRAL  315 (453)
T ss_pred             cHHHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEe----cCceEecccCHHHHHHHHHHhhhhc
Confidence            3588999999999999999999999995   44433221     1367776    23699999999999999987532  


Q ss_pred             CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEE
Q psy7309         383 IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       383 ~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~  447 (454)
                      ..|+|+||+|+|||++..+.||.|||+|+|++++|.+ ...+|+|  .++.++|+.+|+ +|.+.
T Consensus       316 ~~PqKIFEIGkVFR~E~~~~thlREF~QL~~eIaG~~-atfaDle--alL~e~Lr~LGI-dfeit  376 (453)
T TIGR02367       316 PDPIKIFEIGPCYRKESDGKEHLEEFTMLNFCQMGSG-CTRENLE--AIIKDFLDHLEI-DFEIV  376 (453)
T ss_pred             cCCeeEEEEcCeEecCCCCCCCcCeEEEEEEEEECCC-CCHHHHH--HHHHHHHHHCCC-ceEEe
Confidence            5799999999999999999999999999999999987 6666666  699999999998 57664

PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.

>KOG1094|consensus

Probab=99.68  E-value=1.8e-17  Score=167.59  Aligned_cols=95  Identities=23%  Similarity=0.296  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      -.+|+.||++|++||.+.+++||||.+.|+|++.++++||+|||.++.+...                       .....
T Consensus       639 ~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg-----------------------~yy~v  695 (807)
T KOG1094|consen  639 GVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSG-----------------------DYYRV  695 (807)
T ss_pred             hHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccC-----------------------Cceee
Confidence            4579999999999999999999999999999999999999999999976531                       11222


Q ss_pred             CcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeec
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVY  140 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~  140 (454)
                      ....+-...|||+|.+.   .+++++++  |+|++              |+++||++
T Consensus       696 qgr~vlpiRwmawEsil---lgkFttaS--DvWaf--------------gvTlwE~~  733 (807)
T KOG1094|consen  696 QGRAVLPIRWMAWESIL---LGKFTTAS--DVWAF--------------GVTLWEVF  733 (807)
T ss_pred             ecceeeeeeehhHHHHH---hccccchh--hhhhh--------------HHHHHHHH
Confidence            33345678899999998   78899999  99999              99999943

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.67  E-value=3.3e-17  Score=186.08  Aligned_cols=94  Identities=20%  Similarity=0.329  Sum_probs=77.2

Q ss_pred             hhHHHHHHHHHHHHHHHH---HcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIH---SQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH---~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .++.+++.|++.||+|||   +.+|+||||||+||+++.++..++. ||.+....                         
T Consensus       780 ~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~-------------------------  833 (968)
T PLN00113        780 ERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLC-------------------------  833 (968)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-eccccccc-------------------------
Confidence            567899999999999999   6699999999999999998888775 66543221                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                          ......||+.|+|||++.   +..|+.++  ||||+              ||++||+++|+.
T Consensus       834 ----~~~~~~~t~~y~aPE~~~---~~~~~~~s--Dv~S~--------------Gvvl~el~tg~~  876 (968)
T PLN00113        834 ----TDTKCFISSAYVAPETRE---TKDITEKS--DIYGF--------------GLILIELLTGKS  876 (968)
T ss_pred             ----cCCCccccccccCccccc---CCCCCccc--chhhH--------------HHHHHHHHhCCC
Confidence                112237899999999987   67788888  99999              999999887664

>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=99.67  E-value=6.4e-16  Score=149.16  Aligned_cols=147  Identities=14%  Similarity=0.046  Sum_probs=122.8

Q ss_pred             CCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-------ccccEEEEcCCC----Ce
Q psy7309         294 VSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-------SETTASVMTRGG----SI  362 (454)
Q Consensus       294 ~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-------~~~~~~~~d~~G----~~  362 (454)
                      .+++.+++       |....++++|++.++..++++||.+|.||.|++.+.+...       .+++|.+.|.+|    +.
T Consensus        21 ~~G~~~~l-------P~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~   93 (264)
T cd00772          21 GRGIINFL-------PLAKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEED   93 (264)
T ss_pred             CCCEEEEC-------CcHHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCce
Confidence            55566666       8888899999999999999999999999999999987532       257899998887    89


Q ss_pred             EeeCCCCCHHHHHHHHHcC---CCCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcCCCCcccHHHHHHHH---H
Q psy7309         363 VTLPHDLRIPFARYLAQNG---SIVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTNTPGVLTMGSLRRCL---M  433 (454)
Q Consensus       363 ~~Lr~d~T~p~aR~~a~~~---~~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~~~~~~~d~e~~~~~---~  433 (454)
                      ++|||+.++|++++++...   ..+|+|+|++|+|||++ ++.+|  |.|||.|.+..+++.+ ...+++|+..+.   .
T Consensus        94 l~LrPt~e~~~~~~~~~~i~s~~~LPlrl~~~~~~fR~E~r~~~Gl~R~reF~~~e~~~~~~~-~e~a~~e~~~~~~~~~  172 (264)
T cd00772          94 FALRPTLEENIGEIAAKFIKSWKDLPQHLNQIGNKFRDEIRPRFGFLRAREFIMKDGHSAHAD-AEEADEEFLNMLSAYA  172 (264)
T ss_pred             EEECCCCCHHHHHHHHhhhhhhhccCeeEEEEeCeEeCcCCCCCCcceeeEEEEeeeEEecCC-HHHHHHHHHHHHHHHH
Confidence            9999999999999887542   15799999999999998 67688  9999999999999876 677888877665   8


Q ss_pred             HHHHhCCCCCcEEEc
Q psy7309         434 GSFRRFNYGNISFAP  448 (454)
Q Consensus       434 ~~l~~~~~~~~~i~i  448 (454)
                      ++++.+|.-.|.+..
T Consensus       173 ~i~~~l~~lp~~~~~  187 (264)
T cd00772         173 EIARDLAAIDFIEGE  187 (264)
T ss_pred             HHHHhcCCccEEEEE
Confidence            899999832455443

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain.

>KOG0606|consensus

Probab=99.67  E-value=1.6e-17  Score=178.24  Aligned_cols=178  Identities=25%  Similarity=0.302  Sum_probs=126.6

Q ss_pred             HHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCCCcCccc
Q psy7309          10 EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVG   89 (454)
Q Consensus        10 qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g   89 (454)
                      +.+.+++|||..||+|||+||+|.+++.-|++|+.|||+++..........   ..+++..       ..........+|
T Consensus       151 dmvla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl---~eg~I~k-------~t~Ef~dKqvcg  220 (1205)
T KOG0606|consen  151 DMVLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNL---KEGHIEK-------DTHEFQDKQVCG  220 (1205)
T ss_pred             hhhHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchh---hhcchHH-------HHHHhhhccccC
Confidence            346899999999999999999999999999999999999986543211100   0001100       012234556799


Q ss_pred             ccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCCchhhhh
Q psy7309          90 TALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKS  169 (454)
Q Consensus        90 T~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~~~~~~~  169 (454)
                      ||.|+|||++.   ..+|+..+  |+|++              |+|+||++-+.               -|+.+....+.
T Consensus       221 TPeyiaPeVil---rqgygkpv--dwwam--------------GiIlyeFLVgc---------------vpffGdtpeel  266 (1205)
T KOG0606|consen  221 TPEYIAPEVIL---RQGYGKPV--DWWAM--------------GIILYEFLVGC---------------VPFFGDTPEEL  266 (1205)
T ss_pred             CccccChhhhh---hhccCCCc--cHHHH--------------HHHHHHHheee---------------eeccCCCHHHH
Confidence            99999999998   67899999  99999              99999954332               24455555555


Q ss_pred             hhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC---hhhhhcCcccccCCCCCCCccC
Q psy7309         170 LQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS---SEQNLCQPISLEGSSSGLSVLG  246 (454)
Q Consensus       170 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt---a~e~l~hp~f~~~~~~~~~~~~  246 (454)
                      +..+. .....+|+..          ....+++.+++     .++|+.+|..|..   +-++.+|+||+.        +|
T Consensus       267 fg~vi-sd~i~wpE~d----------ea~p~Ea~dli-----~~LL~qnp~~Rlgt~ga~evk~h~ff~~--------LD  322 (1205)
T KOG0606|consen  267 FGQVI-SDDIEWPEED----------EALPPEAQDLI-----EQLLRQNPLCRLGTGGALEVKQHGFFQL--------LD  322 (1205)
T ss_pred             Hhhhh-hhhccccccC----------cCCCHHHHHHH-----HHHHHhChHhhcccchhhhhhhccceee--------cc
Confidence            55554 3333444432          23448889999     9999999999964   778889999984        56


Q ss_pred             ccccccCCC
Q psy7309         247 SEQLLTCDH  255 (454)
Q Consensus       247 ~~~ll~~~~  255 (454)
                      |.-||..+.
T Consensus       323 w~~llRqka  331 (1205)
T KOG0606|consen  323 WKSLLRQKA  331 (1205)
T ss_pred             cchhhhhhc
Confidence            666664443

>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain

Probab=99.67  E-value=1.9e-16  Score=152.24  Aligned_cols=135  Identities=16%  Similarity=0.200  Sum_probs=112.4

Q ss_pred             CCCccccccccccCCchhhHHHHHHHHHHHHHHHhcC--CccccCCCccccccccccccccEEEE----cCCCCeEeeCC
Q psy7309         294 VSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHG--GAHFQTPLLTPLNSLTATSETTASVM----TRGGSIVTLPH  367 (454)
Q Consensus       294 ~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G--~~~i~tp~le~~~~~~~~~~~~~~~~----d~~G~~~~Lr~  367 (454)
                      ..++.|++       |....++++|++.+++.|.++|  |.+|+||++++.+.|        ++.    |.+|+.++|||
T Consensus        21 ~~G~~d~~-------P~g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~~mf--------~~~~g~~d~~~~~~~Lrp   85 (254)
T cd00774          21 VAGFYDYG-------PLGVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPELMF--------KTSIGPVESGGNLGYLRP   85 (254)
T ss_pred             hhcccccC-------chHHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCHHHh--------eeeecccCCCCcccccCC
Confidence            34555666       8888899999999999999996  999999999999544        443    56678999999


Q ss_pred             CCC----HHHHHHHHHcCCCCceeeEeecCccccCCCCC---CccceEEEEEEEEEcCCCC-cccHHHHHHHHHHHHHhC
Q psy7309         368 DLR----IPFARYLAQNGSIVSMKRYCIDRVFRERRVLG---FHPRELYECAFDIVTNTPG-VLTMGSLRRCLMGSFRRF  439 (454)
Q Consensus       368 d~T----~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~~---g~~rE~~Q~g~eiig~~~~-~~~d~e~~~~~~~~l~~~  439 (454)
                      +.|    ++++|.+..+....|+|+|++|+|||++..++   +|.|||+|++++++|.++. ...-..++.+..+++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~~~  165 (254)
T cd00774          86 ETAQGIFVNFKNLLEFNRRKLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLPKF  165 (254)
T ss_pred             cccchHHHHHHHHHHHhCCCCCchhhhhchhhccccCcccceeeeccchhhheeeeECCCCchHHHHHHHHHHHHHHHHc
Confidence            999    89999987654479999999999999988776   8999999999999997632 233456888889999999


Q ss_pred             CCCC
Q psy7309         440 NYGN  443 (454)
Q Consensus       440 ~~~~  443 (454)
                      |++.
T Consensus       166 G~~~  169 (254)
T cd00774         166 AQSP  169 (254)
T ss_pred             CCCc
Confidence            9854

GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly

>KOG1152|consensus

Probab=99.67  E-value=4e-17  Score=165.06  Aligned_cols=97  Identities=36%  Similarity=0.574  Sum_probs=83.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +++-||+||..|+++||++||||||||-+|+.++.+|-+||+|||.|....                           ..
T Consensus       671 eAk~IFkQV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~~k---------------------------sg  723 (772)
T KOG1152|consen  671 EAKLIFKQVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTK---------------------------SG  723 (772)
T ss_pred             HHHHHHHHHHhccccccccCceecccccccEEEecCCeEEEeeccchhhhc---------------------------CC
Confidence            688999999999999999999999999999999999999999999987542                           23


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeee-ecCCch
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAE-VYKDRP  144 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~e-l~~~~~  144 (454)
                      .-..++||..|.|||++.   +..|-.+. .|||++              |+++|. +|.+.|
T Consensus       724 pfd~f~gtv~~aapevl~---g~~y~gk~-qdiwal--------------gillytivykenp  768 (772)
T KOG1152|consen  724 PFDVFVGTVDYAAPEVLG---GEKYLGKP-QDIWAL--------------GILLYTIVYKENP  768 (772)
T ss_pred             CcceeeeeccccchhhhC---CCccCCCc-chhhhh--------------hheeeEEEeccCC
Confidence            455689999999999998   67776553 599999              999999 555443

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.66  E-value=6.2e-17  Score=147.86  Aligned_cols=122  Identities=39%  Similarity=0.575  Sum_probs=100.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      +.++.++.+++.+|++||++|++|+||+|.||+++. ++.++|+|||.+......                         
T Consensus        92 ~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~-------------------------  146 (215)
T cd00180          92 DEILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSD-------------------------  146 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCC-------------------------
Confidence            467899999999999999999999999999999999 899999999998754210                         


Q ss_pred             CCCCcCcccccceeccccccccccc-cccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKA-MYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~-~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ........++..|++||.+.   .. .++...  |+||+              |++++++                    
T Consensus       147 ~~~~~~~~~~~~~~~pe~~~---~~~~~~~~~--D~~~l--------------g~~~~~l--------------------  187 (215)
T cd00180         147 KSLLKTIVGTPAYMAPEVLL---GKGYYSEKS--DIWSL--------------GVILYEL--------------------  187 (215)
T ss_pred             cchhhcccCCCCccChhHhc---ccCCCCchh--hhHHH--------------HHHHHHH--------------------
Confidence            00233456788999999987   33 667777  99999              9998886                    


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                                                              ....+++     .+||+.||.+||+++++++|+
T Consensus       188 ----------------------------------------~~~~~~l-----~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 ----------------------------------------PELKDLI-----RKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             ----------------------------------------HHHHHHH-----HHHhhCCcccCcCHHHHhhCC
Confidence                                                    1123666     999999999999999999875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes

Probab=99.65  E-value=3.6e-16  Score=141.74  Aligned_cols=139  Identities=17%  Similarity=0.151  Sum_probs=117.1

Q ss_pred             HHHHHHHHHHHHHH-hcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC----
Q psy7309         314 LLESTGDKLRRIFQ-LHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS----  382 (454)
Q Consensus       314 ~~~~i~~~l~~~f~-~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~----  382 (454)
                      +++.|++.+.+.+. ++||.+|.+|+|.+.+++...      .+++|.+.|.+++.++|||..+.+++++++....    
T Consensus         1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~   80 (173)
T PF00587_consen    1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR   80 (173)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred             CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence            47889999999999 999999999999999987653      2679999999999999999999999999886321    


Q ss_pred             CCceeeEeecCccccC-CC--CCCccceEEEEEEEEEcCCC-CcccHHHHHHHHHHHHHhCCCCCcEEEcCccc
Q psy7309         383 IVSMKRYCIDRVFRER-RV--LGFHPRELYECAFDIVTNTP-GVLTMGSLRRCLMGSFRRFNYGNISFAPHPRV  452 (454)
Q Consensus       383 ~~~~k~~y~g~vfR~~-~~--~~g~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~  452 (454)
                      .+|+|+|++|+|||++ ++  +-.|.|||+|.++.++|.+. ......+++.++.++++.||+++|.+..++++
T Consensus        81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~~~~~~~~~~~~~~~~~i~~~lgl~~~~~~~~~~~  154 (173)
T PF00587_consen   81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTPEQSEEEFEELLELYKEILEKLGLEPYRIVLSSSG  154 (173)
T ss_dssp             GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESSHHHHHHHHHHHHHHHHHHHHTTSGCEEEEEEETC
T ss_pred             cCCeEEeecccccccccccccccceeeEeeeeceEEEeCCcccHHHHHHHHHHHHHHHHHcCCceEEEEEcCCC
Confidence            4799999999999998 33  35788999999999999863 44678889999999999999988999987763

seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B ....

>PLN02908 threonyl-tRNA synthetase

Probab=99.65  E-value=9.8e-16  Score=166.35  Aligned_cols=179  Identities=9%  Similarity=0.032  Sum_probs=145.4

Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHH----HhCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCc
Q psy7309         264 TVLQDMVRQTLSNPQSKGYKYLVAA----CFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLL  339 (454)
Q Consensus       264 ~~~~~~~~~~~~~~~s~~~~~~~~~----~f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~l  339 (454)
                      +++++.+. .++.......+.+...    .|.+..+++.+++       |....+++.|.+.+++.+.++||.+|.||.|
T Consensus       277 ~~l~~~~~-~~~e~~~rdH~~lg~~~~lf~~~~~~~G~~~~l-------P~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l  348 (686)
T PLN02908        277 KLLKEYKH-RIEEAKKRDHRLLGQKQELFFFHELSPGSCFFL-------PHGARIYNKLMDFIREQYWERGYDEVITPNI  348 (686)
T ss_pred             HHHHHHHh-hhhhccccCHHHHHHhcCCeeecCCCCcceEEe-------chHHHHHHHHHHHHHHHHHHcCCEEEECCcc
Confidence            34444444 4455455555555543    3455555666666       7888899999999999999999999999999


Q ss_pred             ccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCC----CCCccc
Q psy7309         340 TPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRV----LGFHPR  406 (454)
Q Consensus       340 e~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~----~~g~~r  406 (454)
                      ++.+++..+      .++||.| |.+|+.++|||..++++|++++....   .+|+|+|++|+|||++..    +-+|.|
T Consensus       349 ~~~~l~~~sGh~~~~~~~mf~~-~~~~~~~~Lrp~~~~~~~~~~~~~~~s~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvR  427 (686)
T PLN02908        349 YNMDLWETSGHAAHYKENMFVF-EIEKQEFGLKPMNCPGHCLMFAHRVRSYRELPLRLADFGVLHRNELSGALTGLTRVR  427 (686)
T ss_pred             ccHHHHhhcCCccccchhccEE-ecCCeeEEEcCCCcHHHHHHHhccccChhhCCHhHEEeeccccCCCCcCCcCccccc
Confidence            999998653      2679988 77899999999999999999886432   479999999999999876    446999


Q ss_pred             eEEEEEEEEEcCCCCcccHH-HHHHHHHHHHHhCCCCCcEEEcCccc
Q psy7309         407 ELYECAFDIVTNTPGVLTMG-SLRRCLMGSFRRFNYGNISFAPHPRV  452 (454)
Q Consensus       407 E~~Q~g~eiig~~~~~~~d~-e~~~~~~~~l~~~~~~~~~i~i~~~~  452 (454)
                      ||+|++++|++..+...++. |++.++.++++.+|+ +|.+.+++|.
T Consensus       428 eF~q~d~~if~~~~q~~~e~~~~l~~~~~v~~~lG~-~~~~~ls~r~  473 (686)
T PLN02908        428 RFQQDDAHIFCREDQIKDEVKGVLDFLDYVYEVFGF-TYELKLSTRP  473 (686)
T ss_pred             cEEEeeEEEEcCHHHHHHHHHHHHHHHHHHHHHCCC-cEEEEEeCCc
Confidence            99999999999965777888 899999999999999 6999999984

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=99.65  E-value=6.2e-16  Score=161.81  Aligned_cols=136  Identities=18%  Similarity=0.199  Sum_probs=114.3

Q ss_pred             CchhhHHHHHHHHHHHHHHHhcCCccccCCCcccc-------------------cccccccc------------------
Q psy7309         308 RSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPL-------------------NSLTATSE------------------  350 (454)
Q Consensus       308 ~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~-------------------~~~~~~~~------------------  350 (454)
                      .|++...+.++++.++++|..+||.+|++|.+|..                   |+|..+..                  
T Consensus       228 ~~~~~~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he  307 (489)
T PRK04172        228 YPGKKHPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHE  307 (489)
T ss_pred             CCCCCChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHh
Confidence            36666789999999999999999999999999943                   55432210                  


Q ss_pred             ---------ccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCC
Q psy7309         351 ---------TTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPG  421 (454)
Q Consensus       351 ---------~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~  421 (454)
                               -.|.+.|+.++.++||+++|+++||+++.++ ..|+|+|++|+|||+++++.+|.+||+|++++++|.+  
T Consensus       308 ~g~~~~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~-~~p~rlFeiGrVFR~e~~d~~~l~Ef~ql~~~i~G~~--  384 (489)
T PRK04172        308 HGGDTGSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRP-EPPQKYFSIGRVFRPDTIDATHLPEFYQLEGIVMGED--  384 (489)
T ss_pred             ccCCCCCccccCCcchhhhhccccccCChHHHHHHHHhcC-CCCeEEEEecceEcCCCCCcccCCchheEEEEEEeCC--
Confidence                     0466667778899999999999999999876 6899999999999998888899999999999999975  


Q ss_pred             cccHHHHHHHHHHHHHhCCCCCcEEE
Q psy7309         422 VLTMGSLRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       422 ~~~d~e~~~~~~~~l~~~~~~~~~i~  447 (454)
                       ....+++.++.+++..+|+.++.+.
T Consensus       385 -~~f~elkg~l~~ll~~lGi~~~~~~  409 (489)
T PRK04172        385 -VSFRDLLGILKEFYKRLGFEEVKFR  409 (489)
T ss_pred             -CCHHHHHHHHHHHHHHhCCceEEEc
Confidence             2479999999999999998655553

>KOG1025|consensus

Probab=99.62  E-value=5.1e-16  Score=162.42  Aligned_cols=154  Identities=21%  Similarity=0.226  Sum_probs=116.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ....|..||+.||.|||+++++||||-..|||+...+++||.|||+|+.+...        +.               .-
T Consensus       799 ~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d--------~~---------------ey  855 (1177)
T KOG1025|consen  799 DLLNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPD--------EK---------------EY  855 (1177)
T ss_pred             HHHHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCcc--------cc---------------cc
Confidence            46779999999999999999999999999999999999999999999865321        00               00


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......-.+-|||-|.+.   ...|+.++  ||||+              |+++||+++..              ..|..
T Consensus       856 ~~~~gK~pikwmale~i~---~~~~thqS--DVWsf--------------GVtiWElmTFG--------------a~Py~  902 (1177)
T KOG1025|consen  856 SAPGGKVPIKWMALESIR---IRKYTHQS--DVWSF--------------GVTIWELMTFG--------------AKPYD  902 (1177)
T ss_pred             cccccccCcHHHHHHHhh---ccCCCchh--hhhhh--------------hhhHHHHHhcC--------------CCccC
Confidence            111122356799999998   78899999  99999              99999976632              23555


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +....++-..++.+.+..-|+..+             -+...++     .+||..|+..||+++++..
T Consensus       903 gi~~~eI~dlle~geRLsqPpiCt-------------iDVy~~m-----vkCwmid~~~rp~fkel~~  952 (1177)
T KOG1025|consen  903 GIPAEEIPDLLEKGERLSQPPICT-------------IDVYMVM-----VKCWMIDADSRPTFKELAE  952 (1177)
T ss_pred             CCCHHHhhHHHhccccCCCCCCcc-------------HHHHHHH-----HHHhccCcccCccHHHHHH
Confidence            555555555666566655555432             3344566     8999999999999998764

>KOG1033|consensus

Probab=99.62  E-value=6.2e-17  Score=163.24  Aligned_cols=151  Identities=30%  Similarity=0.421  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .....++.|+..|+.|   +|.+|||+||.||++..++.+||+|||+........                   ......
T Consensus       359 s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~kIgDFgl~ts~~~~~-------------------~~~~~~  416 (516)
T KOG1033|consen  359 SLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLKIGDFGLVTSQDKDE-------------------TVAPAA  416 (516)
T ss_pred             hHHHHHHHhhccchhh---ccchhhhccccccccccchhhhhhhhhheeecccCC-------------------cccchh
Confidence            4578899999999999   999999999999999999999999999988543210                   000234


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-C-----chhhHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-D-----RPKTLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~-----~~~~~~~l~~~i~  155 (454)
                      ..++..+||..||+||.+.   +..|+.++  |||||              |+++||++. .     +..+..++     
T Consensus       417 a~~t~~~gt~~YmsPEQi~---g~~y~~kv--dIyaL--------------Glil~EL~~~f~T~~er~~t~~d~-----  472 (516)
T KOG1033|consen  417 ASHTQQVGTLLYMSPEQIR---GQQYSEKV--DIYAL--------------GLILAELLIQFSTQFERIATLTDI-----  472 (516)
T ss_pred             hhhhhcccccccCCHHHHh---hhhhhhhc--chhhH--------------HHHHHHHHHHhccHHHHHHhhhhh-----
Confidence            5788899999999999999   89999999  99999              999999543 1     11222222     


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                                           ....+|+..          ....+....|+     .+||...|.+||++.+.-.|+|.
T Consensus       473 ---------------------r~g~ip~~~----------~~d~p~e~~ll-----~~lls~~p~~RP~~~~~~~~~~~  515 (516)
T KOG1033|consen  473 ---------------------RDGIIPPEF----------LQDYPEEYTLL-----QQLLSPSPEERPSAIEVALHEFL  515 (516)
T ss_pred             ---------------------hcCCCChHH----------hhcCcHHHHHH-----HHhcCCCcccCchHHHHhhhhhc
Confidence                                 122334221          11235666788     99999999999988877777664

>KOG1024|consensus

Probab=99.61  E-value=4.3e-16  Score=151.30  Aligned_cols=153  Identities=17%  Similarity=0.200  Sum_probs=109.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      ++..++.|+..|++|||++|+||.||...|+++++.-+|||+|=.+++.+-.                        ....
T Consensus       397 qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP------------------------~DYh  452 (563)
T KOG1024|consen  397 QLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFP------------------------GDYH  452 (563)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEeccchhccccCc------------------------cccc
Confidence            4567899999999999999999999999999999999999999999985421                        0111


Q ss_pred             CC-cCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          83 SH-TGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~-~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .. .+.-....||+||.+.   +..|+..+  |+||+              |+++||+++-              ...|.
T Consensus       453 cLGDnEnRPvkWMslEal~---n~~yssas--DvWsf--------------GVllWELmtl--------------g~~Py  499 (563)
T KOG1024|consen  453 CLGDNENRPVKWMSLEALQ---NSHYSSAS--DVWSF--------------GVLLWELMTL--------------GKLPY  499 (563)
T ss_pred             ccCCCCCCcccccCHHHHh---hhhhcchh--hhHHH--------------HHHHHHHHhc--------------CCCCc
Confidence            11 1112355799999999   78899988  99999              9999996541              12233


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+-+..+...-+..+.+..-|-.++             +++..++     ..||..+|++|||.+|+..
T Consensus       500 aeIDPfEm~~ylkdGyRlaQP~NCP-------------DeLf~vM-----acCWallpeeRPsf~Qlv~  550 (563)
T KOG1024|consen  500 AEIDPFEMEHYLKDGYRLAQPFNCP-------------DELFTVM-----ACCWALLPEERPSFSQLVI  550 (563)
T ss_pred             cccCHHHHHHHHhccceecCCCCCc-------------HHHHHHH-----HHHHhcCcccCCCHHHHHH
Confidence            3333333333333333333343332             4555566     9999999999999998764

>KOG0603|consensus

Probab=99.58  E-value=5.6e-16  Score=159.20  Aligned_cols=146  Identities=23%  Similarity=0.255  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.+..+++.|++++|+.||+|||+|++||+++.+|++|+.|||+++.....                           
T Consensus        98 ~~~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~---------------------------  150 (612)
T KOG0603|consen   98 DVAFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKE---------------------------  150 (612)
T ss_pred             HHHHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhh---------------------------
Confidence            46678889999999999999999999999999999999999999999965421                           


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                        ...|||..|||||++.     .....+  |.||+              |++.||+++|..+...+...+|.       
T Consensus       151 --~~~cgt~eymApEI~~-----gh~~a~--D~ws~--------------gvl~felltg~~pf~~~~~~~Il-------  200 (612)
T KOG0603|consen  151 --KIACGTYEYRAPEIIN-----GHLSAA--DWWSF--------------GVLAFELLTGTLPFGGDTMKRIL-------  200 (612)
T ss_pred             --hhcccchhhhhhHhhh-----ccCCcc--cchhh--------------hhhHHHHhhCCCCCchHHHHHHh-------
Confidence              1119999999999986     356667  99999              99999987755432223333332       


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccccc
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLE  236 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~  236 (454)
                                   .....+|...             +..+.+++     ..++..+|.+|..+     .|+++|+||..
T Consensus       201 -------------~~~~~~p~~l-------------~~~a~~~~-----~~l~~r~p~nrLg~~~~~~~eik~h~f~~~  248 (612)
T KOG0603|consen  201 -------------KAELEMPREL-------------SAEARSLF-----RQLFKRNPENRLGAGPDGVDEIKQHEFFQS  248 (612)
T ss_pred             -------------hhccCCchhh-------------hHHHHHHH-----HHHHhhCHHHHhccCcchhHHHhccchhee
Confidence                         2233444442             26777888     99999999999865     78999999985

>PRK12325 prolyl-tRNA synthetase; Provisional

Probab=99.53  E-value=2.4e-14  Score=147.99  Aligned_cols=153  Identities=12%  Similarity=0.115  Sum_probs=127.1

Q ss_pred             HhCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCe
Q psy7309         289 CFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSI  362 (454)
Q Consensus       289 ~f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~  362 (454)
                      ++.+..+++..++       |..+.++++|++.+++.+.++||++|.||.|++.+++..+      .+++|++.|.+++.
T Consensus        31 ~~~~~~~G~~~~l-------P~g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~  103 (439)
T PRK12325         31 MIRQQAAGIYSWL-------PLGLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDRE  103 (439)
T ss_pred             CccccCCceEEEC-------CcHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCE
Confidence            4455555555555       8888899999999999999999999999999999988643      26899999999999


Q ss_pred             EeeCC---CCCHHHHHHHHHcCCCCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcCCC--CcccHHHHHHHHHH
Q psy7309         363 VTLPH---DLRIPFARYLAQNGSIVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTNTP--GVLTMGSLRRCLMG  434 (454)
Q Consensus       363 ~~Lr~---d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~~~--~~~~d~e~~~~~~~  434 (454)
                      ++|||   +.+.+++|...+....+|+|+|++|+|||++ ++..|  |.|||+|-+.=+++.+.  ......+++.+..+
T Consensus       104 ~~L~Pt~e~~~~~~~~~~~~syrdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~~~~a~~~~~~~~~~~~~  183 (439)
T PRK12325        104 MLYGPTNEEMITDIFRSYVKSYKDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLDEEGARHSYNRMFVAYLR  183 (439)
T ss_pred             EEEcCCCcHHHHHHHHHHhhhchhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCCHHHHHHHHHHHHHHHHH
Confidence            99999   9999999987765436999999999999998 67778  99999997766665431  23467889999999


Q ss_pred             HHHhCCCCCcEEEc
Q psy7309         435 SFRRFNYGNISFAP  448 (454)
Q Consensus       435 ~l~~~~~~~~~i~i  448 (454)
                      +|+.+|+..+.+..
T Consensus       184 i~~~lgl~~~~v~~  197 (439)
T PRK12325        184 TFARLGLKAIPMRA  197 (439)
T ss_pred             HHHHcCCceEEEEE
Confidence            99999997666654

>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed

Probab=99.51  E-value=6.4e-14  Score=140.86  Aligned_cols=126  Identities=15%  Similarity=0.160  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCccccccccc---c-----ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC--C
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA---T-----SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS--I  383 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~---~-----~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~--~  383 (454)
                      -.++|++.|+++|..+||.+|.||+|...+.+..   .     .+.+|.+    ++.++|||++|++++|+++.+..  .
T Consensus       205 ~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i----deel~LRpsLtPsLlr~la~n~k~~~  280 (417)
T PRK09537        205 YLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV----DKNFCLRPMLAPGLYNYLRKLDRILP  280 (417)
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee----CCceEehhhhHHHHHHHHHhhhhccc
Confidence            3789999999999999999999999976554321   1     1346664    34799999999999999886432  5


Q ss_pred             CceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEE
Q psy7309         384 VSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       384 ~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~  447 (454)
                      .|+|+|++|+|||++..+.++.+||+|++++++|.. ...  +|+..++.++|+.+|+ +|++.
T Consensus       281 ~P~RIFEIG~VFR~E~~g~~hlrEf~Ql~~~iiGs~-~~f--~dL~~lleeLL~~LGI-~f~i~  340 (417)
T PRK09537        281 DPIKIFEIGPCYRKESDGKEHLEEFTMVNFCQMGSG-CTR--ENLENIIDDFLKHLGI-DYEII  340 (417)
T ss_pred             CCeeEEEEeceEecCCCCCCCcceEEEEEEEEeCCc-hHH--HHHHHHHHHHHHHCCC-CcEEe
Confidence            799999999999999888899999999999999876 444  4577999999999998 57665

>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional

Probab=99.49  E-value=4.1e-13  Score=137.54  Aligned_cols=127  Identities=20%  Similarity=0.206  Sum_probs=101.8

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCC-Cccc----ccccc-c------cccccEEEEcC-----------------------
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTP-LLTP----LNSLT-A------TSETTASVMTR-----------------------  358 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp-~le~----~~~~~-~------~~~~~~~~~d~-----------------------  358 (454)
                      -...+++.++++|..-||.++++| .+|.    .|.+. .      ....+|-+-++                       
T Consensus       230 Pl~~~~~~i~~if~~mGF~e~~~~~~ves~f~NFDaL~~PqdHPARd~~DTFyl~~~~~~~~~~~p~~~~~~Vk~~He~G  309 (494)
T PTZ00326        230 PLLKVRREFREILLEMGFEEMPTNRYVESSFWNFDALFQPQQHPARDAQDTFFLSKPETSKVNDLDDDYVERVKKVHEVG  309 (494)
T ss_pred             hHHHHHHHHHHHHHhCCCEEecCCCCccccchhhhhhcCCCCCCCCCcCceEEEcCccccccccCcHHHHHHHHHHhccC
Confidence            577899999999999999999876 3443    22221 1      12456665431                       


Q ss_pred             --------------CCCeEeeCCCCCHHHHHHHHHcC------C-CCceeeEeecCccccCCCCCCccceEEEEEEEEEc
Q psy7309         359 --------------GGSIVTLPHDLRIPFARYLAQNG------S-IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVT  417 (454)
Q Consensus       359 --------------~G~~~~Lr~d~T~p~aR~~a~~~------~-~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig  417 (454)
                                    ..+.++||++.|++.||+++.+.      . ..|.|+|++|+|||++....+|.+||+|++.+++|
T Consensus       310 ~~gS~Gw~y~W~~e~a~~~vLRtHtTa~~aR~l~~~~~~~~~~~~~~P~k~fsigrVfR~d~~DatH~~eFhQ~Eg~vi~  389 (494)
T PTZ00326        310 GYGSIGWRYDWKLEEARKNILRTHTTAVSARMLYKLAQEYKKTGPFKPKKYFSIDRVFRNETLDATHLAEFHQVEGFVID  389 (494)
T ss_pred             CcCCcccccccccchhccccccCCCCHHHHHHHHhhccccccccCCCCceEEecCCEecCCCCCCCcCceeEEEEEEEEe
Confidence                          11469999999999999999752      1 24999999999999999999999999999999999


Q ss_pred             CCCCcccHHHHHHHHHHHHHhCCCCC
Q psy7309         418 NTPGVLTMGSLRRCLMGSFRRFNYGN  443 (454)
Q Consensus       418 ~~~~~~~d~e~~~~~~~~l~~~~~~~  443 (454)
                      .. .  ++++++.++.++++++|+.+
T Consensus       390 ~~-~--s~~~L~~~l~~f~~~lG~~~  412 (494)
T PTZ00326        390 RN-L--TLGDLIGTIREFFRRIGITK  412 (494)
T ss_pred             CC-C--CHHHHHHHHHHHHHhcCCCc
Confidence            87 2  78999999999999999866

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.46  E-value=3.2e-14  Score=132.39  Aligned_cols=101  Identities=36%  Similarity=0.487  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.+|.+||++|++|+||+|.||+++.++.++|+|||.+......                        ..
T Consensus        98 ~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~------------------------~~  153 (225)
T smart00221       98 EEARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRD------------------------LA  153 (225)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCc------------------------cc
Confidence            357889999999999999999999999999999999999999999998754321                        00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      .......++..|++||++.  ....++.+.  |+||+              |++++++++|+.
T Consensus       154 ~~~~~~~~~~~~~~pe~~~--~~~~~~~~~--Dv~~l--------------G~~~~~l~~g~~  198 (225)
T smart00221      154 ALLKTVKGTPFYLAPEVLL--GGKGYGEAV--DIWSL--------------GVILYELLWGPE  198 (225)
T ss_pred             ccccceeccCCcCCHhHhc--CCCCCCchh--hHHHH--------------HHHHHHHHHCCC
Confidence            1234457788999999984  256677777  99999              999999776654

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG4158|consensus

Probab=99.45  E-value=8.9e-14  Score=135.74  Aligned_cols=156  Identities=26%  Similarity=0.403  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC----CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED----HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~----~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..-++.|+++|+.|||++||.|||+|.+|||+..+.    .+.|+|||.+-.-..  .+.     .   ++       +.
T Consensus       343 ~~~~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcLAd~~--hGl-----q---lp-------y~  405 (598)
T KOG4158|consen  343 GRVILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCLADDN--HGL-----Q---LP-------YE  405 (598)
T ss_pred             HHHHHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceeeeccc--ccc-----c---cc-------cc
Confidence            345789999999999999999999999999995443    578999998752110  000     0   00       00


Q ss_pred             CCCCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                      +  ..-..-|+..-||||+....  .....++ .++|.|+.              |.+.||+++..-             
T Consensus       406 S--~~Vd~GGNa~lmAPEi~ta~PGp~avvny-~kAD~WA~--------------GalaYEIfg~~N-------------  455 (598)
T KOG4158|consen  406 S--DEVDLGGNAKLMAPEIATAVPGPNAVVNY-EKADTWAA--------------GALAYEIFGRSN-------------  455 (598)
T ss_pred             c--ccccCCCcceecchhhhhcCCCCceeecc-chhhhhhh--------------hhhHHHHhccCC-------------
Confidence            0  11223467778999997521  1112222 23499999              999999776332             


Q ss_pred             CCCCCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh
Q psy7309         158 NGPSTGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE  226 (454)
Q Consensus       158 ~~p~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~  226 (454)
                        ||.+.... -....+....-+.+|+.+             .+.+.+++     ..+|+.||+||+|+.
T Consensus       456 --PFY~rGem~L~~r~Yqe~qLPalp~~v-------------pp~~rqlV-----~~lL~r~pskRvsp~  505 (598)
T KOG4158|consen  456 --PFYKRGEMLLDTRTYQESQLPALPSRV-------------PPVARQLV-----FDLLKRDPSKRVSPN  505 (598)
T ss_pred             --cccccchheechhhhhhhhCCCCcccC-------------ChHHHHHH-----HHHhcCCccccCCcc
Confidence              22220000 000112223334444443             37778898     999999999999965

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.44  E-value=9.9e-14  Score=134.23  Aligned_cols=174  Identities=29%  Similarity=0.353  Sum_probs=111.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+..++.|++.++.|+|+.|++|||+||+||+++..+ .++++|||.+........                     ...
T Consensus       102 ~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~---------------------~~~  160 (384)
T COG0515         102 EALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGS---------------------TSS  160 (384)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCc---------------------ccc
Confidence            5788999999999999999999999999999999988 699999999974422100                     000


Q ss_pred             --CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 --TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 --~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                        ......+||..|+|||.+.......+....  |+||+              |+++++++.+..+              
T Consensus       161 ~~~~~~~~~~t~~~~~pe~~~~~~~~~~~~~~--D~~s~--------------g~~~~~~~~~~~p--------------  210 (384)
T COG0515         161 IPALPSTSVGTPGYMAPEVLLGLSLAYASSSS--DIWSL--------------GITLYELLTGLPP--------------  210 (384)
T ss_pred             ccccccccccccccCCHHHhcCCCCCCCCchH--hHHHH--------------HHHHHHHHhCCCC--------------
Confidence              245678999999999998710004667777  99999              8777774443321              


Q ss_pred             CCCCch----hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         160 PSTGSN----VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       160 p~~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                       +....    .......+.............. ...    ........+++     ..++..+|..|.+..+...+++..
T Consensus       211 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~-----~~~~~~~~~~r~~~~~~~~~~~~~  279 (384)
T COG0515         211 -FEGEKNSSATSQTLKIILELPTPSLASPLSP-SNP----ELISKAASDLL-----KKLLAKDPKNRLSSSSDLSHDLLA  279 (384)
T ss_pred             -CCCCCccccHHHHHHHHHhcCCcccccccCc-ccc----chhhHHHHHHH-----HHHHhcCchhcCCHHHHhhchHhh
Confidence             11110    1111111111111101111000 000    00113455666     999999999999999988886655


Q ss_pred             cCC
Q psy7309         236 EGS  238 (454)
Q Consensus       236 ~~~  238 (454)
                      ...
T Consensus       280 ~~~  282 (384)
T COG0515         280 HLK  282 (384)
T ss_pred             Ccc
Confidence            433

>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain

Probab=99.43  E-value=9.9e-13  Score=122.35  Aligned_cols=132  Identities=16%  Similarity=0.127  Sum_probs=106.5

Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCcccccccccc---ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeEee
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT---SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCI  391 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~---~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~y~  391 (454)
                      ++++++.++++|..+||.+|.||.|++.+.+...   .+.+..+.+.+++..+|||++|.++++.++.|....|.|+|++
T Consensus         2 ~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfei   81 (211)
T cd00768           2 RSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEI   81 (211)
T ss_pred             HHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEE
Confidence            6789999999999999999999999998665322   1235555577899999999999999999887643579999999


Q ss_pred             cCccccCCCCC--CccceEEEEEEEEEcCCCC-cccHHHHHHHHHHHHHhCCC-CCcEE
Q psy7309         392 DRVFRERRVLG--FHPRELYECAFDIVTNTPG-VLTMGSLRRCLMGSFRRFNY-GNISF  446 (454)
Q Consensus       392 g~vfR~~~~~~--g~~rE~~Q~g~eiig~~~~-~~~d~e~~~~~~~~l~~~~~-~~~~i  446 (454)
                      |+|||.+....  +|.+||.|.+++++|.... .....++..++.++++.+|+ .++.+
T Consensus        82 g~vfr~e~~~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~lg~~~~~~~  140 (211)
T cd00768          82 GPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRALGIKLDIVF  140 (211)
T ss_pred             cceeecCCCccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence            99999865433  5679999999999997621 12578899999999999997 24444

Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.38  E-value=4.9e-14  Score=136.25  Aligned_cols=93  Identities=25%  Similarity=0.364  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCCC
Q psy7309           5 WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSH   84 (454)
Q Consensus         5 ~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (454)
                      ..+..|++..+++||+.|++|+||||+|++++.+|.+.|+||+.......                            ..
T Consensus       148 l~lT~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~----------------------------~~  199 (288)
T PF14531_consen  148 LSLTVQMIRLVANLHSYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGT----------------------------RY  199 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEEST-SGGGEEE-TTS-EEE--GGGEEETTE----------------------------EE
T ss_pred             HHHHHHHHHHHHHHhhcceEecccceeeEEEcCCCCEEEcChHHHeecCc----------------------------ee
Confidence            34568999999999999999999999999999999999999997764321                            11


Q ss_pred             cCcccccceecccccccc-----ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC
Q psy7309          85 TGQVGTALYAAPELDSHG-----VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK  141 (454)
Q Consensus        85 ~~~~gT~~Y~aPE~~~~~-----~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~  141 (454)
                      .....+..|.+||+....     ....++.+.  |.|+|              |+++|.++.
T Consensus       200 ~~~~~~~~~~PPe~~~~~~~~~~~~~~~t~~~--DaW~L--------------G~~ly~lWC  245 (288)
T PF14531_consen  200 RCSEFPVAFTPPELESCAGQFGQNNAPYTFAT--DAWQL--------------GITLYSLWC  245 (288)
T ss_dssp             EGGGS-TTTS-HHHHHHHTSCHHSEEEE-HHH--HHHHH--------------HHHHHHHHH
T ss_pred             eccCCCcccCChhhhhhhcccCcccceeeecc--CHHHH--------------HHHHHHHHH
Confidence            112345778999986521     235678888  99999              777777544

>KOG1240|consensus

Probab=99.38  E-value=1.6e-13  Score=148.00  Aligned_cols=160  Identities=26%  Similarity=0.310  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      -+-|+.|++.||+-+|..||+|+|||.+|||++.=+.+.|+||..-+...               +|+..++..  ....
T Consensus       122 KkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFKPtY---------------LPeDNPadf--~fFF  184 (1431)
T KOG1240|consen  122 KKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFKPTY---------------LPEDNPADF--TFFF  184 (1431)
T ss_pred             HHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccCCcc---------------CCCCCcccc--eEEE
Confidence            35589999999999999999999999999999999999999998766432               111111100  1112


Q ss_pred             CcCcccccceeccccccccc--------cccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-Cch-hhHHHHHHH
Q psy7309          84 HTGQVGTALYAAPELDSHGV--------KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRP-KTLEELKHN  153 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~--------~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~-~~~~~l~~~  153 (454)
                      .|+... ..|.|||-+....        ....+.+-  ||+|+              ||+++|++. |+| +++.+|..-
T Consensus       185 DTSrRR-tCYiAPERFv~~~~~~~~~q~~~~L~paM--DIFS~--------------GCViaELf~Eg~PlF~LSQL~aY  247 (1431)
T KOG1240|consen  185 DTSRRR-TCYIAPERFVSALGKTSVGQDAPLLTPAM--DIFSA--------------GCVIAELFLEGRPLFTLSQLLAY  247 (1431)
T ss_pred             ecCCce-eeecChHhhhccccccccCCcccccChhh--hhhhh--------------hHHHHHHHhcCCCcccHHHHHhH
Confidence            222222 3799999875211        11145566  99999              999999554 565 566665222


Q ss_pred             hhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         154 IRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       154 i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      -+                    +. ...++        .+..+..+.....+|     ..|++.||.+|.+|++.|+.
T Consensus       248 r~--------------------~~-~~~~e--------~~Le~Ied~~~Rnli-----l~Mi~rdPs~RlSAedyL~~  291 (1431)
T KOG1240|consen  248 RS--------------------GN-ADDPE--------QLLEKIEDVSLRNLI-----LSMIQRDPSKRLSAEDYLQK  291 (1431)
T ss_pred             hc--------------------cC-ccCHH--------HHHHhCcCccHHHHH-----HHHHccCchhccCHHHHHHh
Confidence            11                    11 11111        111123345677888     99999999999999999974

>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain

Probab=99.38  E-value=5.9e-13  Score=128.52  Aligned_cols=156  Identities=14%  Similarity=0.104  Sum_probs=117.3

Q ss_pred             ChhHHHHHHH--HhCC-CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc-c------
Q psy7309         279 SKGYKYLVAA--CFNQ-KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA-T------  348 (454)
Q Consensus       279 s~~~~~~~~~--~f~q-~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~-~------  348 (454)
                      +..|.+++..  +++. +.+++.+++       |....+++.|++.+++.++++||.+|.||.|++.+++.. +      
T Consensus         3 ~~w~~~l~~~~~~~d~~~~~G~~~~l-------P~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f   75 (261)
T cd00778           3 SEWYTEVITKAELIDYGPVKGCMVFR-------PYGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGF   75 (261)
T ss_pred             HHHHHHHHHHhCCcccCCCCCeEEEc-------ccHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhc
Confidence            3456666554  2222 333444444       788889999999999999999999999999999998742 2      


Q ss_pred             ccccEEEEcCCCC----eEeeCCC----CCHHHHHHHHHcCCCCceeeEeecCccccCCCC---CCccceEEEEEE-EEE
Q psy7309         349 SETTASVMTRGGS----IVTLPHD----LRIPFARYLAQNGSIVSMKRYCIDRVFRERRVL---GFHPRELYECAF-DIV  416 (454)
Q Consensus       349 ~~~~~~~~d~~G~----~~~Lr~d----~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~---~g~~rE~~Q~g~-eii  416 (454)
                      .+++|++.|.+|+    .++|||+    +|..+++.+.... .+|+|+|++|+|||++..+   -+|.|||.+.+. -++
T Consensus        76 ~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~i~s~r-~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~  154 (261)
T cd00778          76 APEVAWVTHGGLEELEEPLALRPTSETAIYPMFSKWIRSYR-DLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAH  154 (261)
T ss_pred             CcceEEEEecCCcccCCcEEEcCCCCHHHHHHHHhhccchh-hcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeecc
Confidence            3689999987764    7999999    8888888776554 5899999999999998755   358999999888 344


Q ss_pred             cCCC-CcccHHHHHHHHHHHHHhC-CCC
Q psy7309         417 TNTP-GVLTMGSLRRCLMGSFRRF-NYG  442 (454)
Q Consensus       417 g~~~-~~~~d~e~~~~~~~~l~~~-~~~  442 (454)
                      .... ....-.+++.+..++++.+ |+.
T Consensus       155 ~~~e~~~~~~~~~~~~~~~i~~~llgl~  182 (261)
T cd00778         155 ATEEEAEEEVLQILDLYKEFYEDLLAIP  182 (261)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhCCCe
Confidence            4321 2233445777888999998 984

ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.35  E-value=6.5e-13  Score=133.51  Aligned_cols=79  Identities=23%  Similarity=0.250  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHHHHcCCcccCC-CCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           5 WRLLREIIEGLSHIHSQGIIHRDL-KPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         5 ~~i~~qil~gL~~LH~~giiHrDL-Kp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      ..++.|++.||.|||++||+|||| ||+|||++.++.+||+|||+|+.+.....                 .........
T Consensus       114 ~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~-----------------~~~~~~~~d  176 (365)
T PRK09188        114 PAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGA-----------------LYRIAAYED  176 (365)
T ss_pred             HHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcc-----------------hhhhhhhhh
Confidence            468999999999999999999999 99999999999999999999986532100                 000011223


Q ss_pred             CcCcccccceecccccc
Q psy7309          84 HTGQVGTALYAAPELDS  100 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~  100 (454)
                      .++..+++.|+|||.+.
T Consensus       177 ~~~~~~~~~~~~pe~~~  193 (365)
T PRK09188        177 LRHLLKHKRTYAPDALT  193 (365)
T ss_pred             hhhhhccCccCCcccCC
Confidence            35778999999999986

>KOG1164|consensus

Probab=99.26  E-value=2.8e-12  Score=127.89  Aligned_cols=95  Identities=24%  Similarity=0.335  Sum_probs=72.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-----CeEEecccchh--hhhhhcCCCccccccCccCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-----HVKIGDFGLAT--NILQKHAGPLARELTGYILPPIDS   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-----~vKL~DFGla~--~~~~~~~~~~~~~~~~~~~~~~~~   74 (454)
                      ..+.+++.|++.+|++||+.|++||||||+|+++....     .+.|.|||+|+  .+.......        ..     
T Consensus       122 ~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~--------~~-----  188 (322)
T KOG1164|consen  122 KTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGN--------LR-----  188 (322)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcc--------cc-----
Confidence            35789999999999999999999999999999998763     58999999998  332111000        00     


Q ss_pred             CCcccCCCCCcCcccccceeccccccccccccccccCCccccch
Q psy7309          75 TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSK  118 (454)
Q Consensus        75 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl  118 (454)
                          ..........||..|+++.+..   +...+...  |+||+
T Consensus       189 ----~~r~~~~~~rGT~ry~S~~~H~---~~e~~r~D--Dles~  223 (322)
T KOG1164|consen  189 ----PPRPQKGLFRGTLRYASINVHL---GIEQGRRD--DLESL  223 (322)
T ss_pred             ----cCCCCccCCCCccccccHHHhC---CCccCCch--hhhhH
Confidence                0111124567999999999987   67777788  99998

>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I

Probab=99.25  E-value=9.5e-12  Score=129.64  Aligned_cols=157  Identities=13%  Similarity=0.054  Sum_probs=119.6

Q ss_pred             CChhHHHHHHH--HhCC-CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------
Q psy7309         278 QSKGYKYLVAA--CFNQ-KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------  348 (454)
Q Consensus       278 ~s~~~~~~~~~--~f~q-~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------  348 (454)
                      -+..|++++..  +.+. +.+++.+++       |..+.+++.|.+.+.+.|+++||.+|.+|+|++.+.+...      
T Consensus         8 f~~wy~~l~~~~~li~~~~~~G~~~~l-------P~g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~   80 (472)
T TIGR00408         8 FSEWYHQILEKAEIIDYYPVKGCYVWL-------PYGFKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKG   80 (472)
T ss_pred             HHHHHHHHHHHcCCccccCCCceEEEC-------cCHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhh
Confidence            45667776643  2222 445555555       8888899999999999999999999999999999987642      


Q ss_pred             -ccccEEEEcCC----CCeEeeCCCCCHHHHHHHHHcC---CCCceeeEeecCccccCCCC---CCccceEEEEEEEEEc
Q psy7309         349 -SETTASVMTRG----GSIVTLPHDLRIPFARYLAQNG---SIVSMKRYCIDRVFRERRVL---GFHPRELYECAFDIVT  417 (454)
Q Consensus       349 -~~~~~~~~d~~----G~~~~Lr~d~T~p~aR~~a~~~---~~~~~k~~y~g~vfR~~~~~---~g~~rE~~Q~g~eiig  417 (454)
                       .+++|.+.|.+    ++.++|||+.+.+++.++++..   ..+|+|+|++|+|||++..+   -+|.|||+|-+.-.+=
T Consensus        81 f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~  160 (472)
T TIGR00408        81 FEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKWVKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAH  160 (472)
T ss_pred             cchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhccccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhh
Confidence             36899999987    4899999999999997766431   15899999999999997753   3689999999886322


Q ss_pred             CCCCcccH---HHHHHHHHHHHH-hCCCC
Q psy7309         418 NTPGVLTM---GSLRRCLMGSFR-RFNYG  442 (454)
Q Consensus       418 ~~~~~~~d---~e~~~~~~~~l~-~~~~~  442 (454)
                      .+ ...+.   .+++.+..++++ .||+.
T Consensus       161 ~~-~e~a~~e~~~~l~~y~~i~~~~lglp  188 (472)
T TIGR00408       161 AT-AEEAEEQVLRALDIYKEFIENSLAIP  188 (472)
T ss_pred             CC-HHHHHHHHHHHHHHHHHHHHhccCCe
Confidence            22 22233   346677888887 88884

Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae.

>PRK08661 prolyl-tRNA synthetase; Provisional

Probab=99.24  E-value=2.4e-11  Score=126.88  Aligned_cols=132  Identities=14%  Similarity=0.104  Sum_probs=108.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc-c------ccccEEEEcCC----CCeEeeCCCC----CHHH
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA-T------SETTASVMTRG----GSIVTLPHDL----RIPF  373 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~-~------~~~~~~~~d~~----G~~~~Lr~d~----T~p~  373 (454)
                      |..+.+++.|++.+.+.|+++||.+|.+|+|.+.+++.. +      .+++|.+.+.+    ++.++|||+.    |.++
T Consensus        41 P~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~  120 (477)
T PRK08661         41 PYGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMY  120 (477)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHH
Confidence            888899999999999999999999999999999999743 2      36899999877    5689999999    8888


Q ss_pred             HHHHHHcCCCCceeeEeecCccccCCCCC--CccceEEEEEEEEEcCCCCcccH---HHHHHHHHHHH-HhCCCC
Q psy7309         374 ARYLAQNGSIVSMKRYCIDRVFRERRVLG--FHPRELYECAFDIVTNTPGVLTM---GSLRRCLMGSF-RRFNYG  442 (454)
Q Consensus       374 aR~~a~~~~~~~~k~~y~g~vfR~~~~~~--g~~rE~~Q~g~eiig~~~~~~~d---~e~~~~~~~~l-~~~~~~  442 (454)
                      +|.+.... .+|+|+|++|+|||++...+  +|.|||+|-..-++=.+ ...++   .+++.+..+++ +.||+.
T Consensus       121 ~~~i~Syr-dLPlrl~q~~~vfR~E~~~rgl~R~rEF~~~E~h~~~~~-~eea~~e~~~~l~~y~~i~~~~Lglp  193 (477)
T PRK08661        121 KKWIQSYR-DLPLLYNQWVNVVRWETKTRPFLRTREFLWQEGHTAHAT-EEEAEEETLEMLEIYKEFFEDYLAIP  193 (477)
T ss_pred             Hhhhcchh-hcCHHHhcccceeeCCCCCCCcceeeeEEEcceeeeeCC-HHHHHHHHHHHHHHHHHHHHHhcCCe
Confidence            88887654 69999999999999987665  68999999888654333 23333   44667777888 888874

>KOG0590|consensus

Probab=99.17  E-value=1.1e-11  Score=132.54  Aligned_cols=164  Identities=27%  Similarity=0.333  Sum_probs=115.5

Q ss_pred             hHHHHHHHHHHHHHHHH-HcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           3 RAWRLLREIIEGLSHIH-SQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH-~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .+.+++.|+..|+.|+| ..++.|||+||+|.+++.++ .+|++|||+|..+....                      ..
T Consensus       124 ~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~----------------------g~  181 (601)
T KOG0590|consen  124 SASRYLPQLNSGLSYLHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKN----------------------GA  181 (601)
T ss_pred             chhhhhhhhccCccccCcccccccCCCCCccchhccCCCcccCCCchhhccccccC----------------------Cc
Confidence            46789999999999999 99999999999999999999 99999999998664310                      12


Q ss_pred             CCCCcCccc-ccceecccccccccc-ccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          81 DTSHTGQVG-TALYAAPELDSHGVK-AMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        81 ~~~~~~~~g-T~~Y~aPE~~~~~~~-~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      .......+| ++.|+|||...   + .......  |+||.              |+++.-+.++..+.....        
T Consensus       182 ~~~~~~~~g~s~~y~a~E~~~---~~~~~~~~~--d~~S~--------------g~~l~~~~~g~~p~~~~~--------  234 (601)
T KOG0590|consen  182 ERSLKDRCGSSPPYGAPEHLS---GKAYRGPSV--DVWSL--------------GIVLSAMLTGELPWDFPS--------  234 (601)
T ss_pred             ceeeecccCCCCCCCCccccc---chhhcCCCc--ccccc--------------cccccccccCCCCccccc--------
Confidence            233445677 99999999988   3 3445667  99999              999998776543211110        


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                         ...   .....+....  .....   -.|+.     .+....+++     ..+|..+|..|.+.+++..+||+..
T Consensus       235 ---~~~---~~~~~~~~~~--~~~~~---~~~~~-----~~~~~~~~l-----~k~l~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  235 ---RKD---GRYSSWKSNK--GRFTQ---LPWNS-----ISDQAHDLL-----HKILKENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             ---ccc---ccceeecccc--ccccc---Ccccc-----CChhhhhcc-----cccccCCchhccccccccccccccc
Confidence               000   0000000000  00000   12332     236667788     9999999999999999999999988

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.15  E-value=3.4e-11  Score=110.83  Aligned_cols=50  Identities=18%  Similarity=0.311  Sum_probs=45.3

Q ss_pred             hhHHHHHHHHHHHHHHH-HHcCCcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           2 GRAWRLLREIIEGLSHI-HSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~L-H~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      +.+..++.|++.+|.++ |+.||+||||||+|||++ ++.++|+|||+|...
T Consensus       117 ~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v~LiDFG~a~~~  167 (190)
T cd05147         117 SKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKLYIIDVSQSVEH  167 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcEEEEEccccccC
Confidence            35789999999999999 799999999999999998 578999999999743

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1163|consensus

Probab=99.13  E-value=8.7e-11  Score=108.25  Aligned_cols=104  Identities=22%  Similarity=0.276  Sum_probs=80.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..+.-++-|++.-++|+|.+++|||||||+|+|+.-+-   .+-++|||+|+.+.+..                  +..+
T Consensus       111 kTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~------------------t~~H  172 (341)
T KOG1163|consen  111 KTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIR------------------TRQH  172 (341)
T ss_pred             HhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhcccc------------------cccc
Confidence            45778899999999999999999999999999997653   58899999999764321                  1122


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD  142 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~  142 (454)
                      -.....+...||..|.+-....   +...+...  |+=|+              |.++..+..|
T Consensus       173 Ipyre~r~ltGTaRYASinAh~---g~eqSRRD--DmeSv--------------gYvLmYfnrG  217 (341)
T KOG1163|consen  173 IPYREDRNLTGTARYASINAHL---GIEQSRRD--DMESV--------------GYVLMYFNRG  217 (341)
T ss_pred             CccccCCccceeeeehhhhhhh---hhhhhhhh--hhhhh--------------cceeeeeecC
Confidence            3455667789999999987766   45556667  99999              8877765443

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.10  E-value=7.5e-11  Score=108.50  Aligned_cols=50  Identities=24%  Similarity=0.399  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      +++.+++.|++.+|.++|+ +||+||||||+|||++ ++.++|+|||+|+..
T Consensus       117 ~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~~liDFG~a~~~  167 (190)
T cd05145         117 EEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKPYIIDVSQAVEL  167 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCEEEEEcccceec
Confidence            3678899999999999999 9999999999999999 889999999999854

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1165|consensus

Probab=99.08  E-value=1.5e-10  Score=111.14  Aligned_cols=105  Identities=20%  Similarity=0.241  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-----CeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-----HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-----~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      ..+..++.|++.-++|+|++.+|.|||||+|+||...+     .+.|+|||+|+.+.+..                  +.
T Consensus       124 KTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~------------------Tk  185 (449)
T KOG1165|consen  124 KTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPK------------------TK  185 (449)
T ss_pred             HhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCcc------------------cc
Confidence            45778999999999999999999999999999998655     48999999999774311                  12


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCc
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDR  143 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~  143 (454)
                      -+-....+.+..||..||+-...+   +...+...  |+=||              |-+++.++.|.
T Consensus       186 qHIPYrE~KSLsGTARYMSINTHl---GrEQSRRD--DLEaL--------------GHvFmYFLRGs  233 (449)
T KOG1165|consen  186 QHIPYREHKSLSGTARYMSINTHL---GREQSRRD--DLEAL--------------GHVFMYFLRGS  233 (449)
T ss_pred             ccCccccccccccceeeeEeeccc---cchhhhhh--hHHHh--------------hhhhhhhccCC
Confidence            224466778899999999988877   66677778  99999              77777755433

>PRK09350 poxB regulator PoxA; Provisional

Probab=99.06  E-value=2.1e-10  Score=113.13  Aligned_cols=115  Identities=19%  Similarity=0.157  Sum_probs=88.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccc---cccEEEEc-CCCCeEeeC--CCCCHHHHHHHHHcCCCC
Q psy7309         311 NFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATS---ETTASVMT-RGGSIVTLP--HDLRIPFARYLAQNGSIV  384 (454)
Q Consensus       311 ~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~---~~~~~~~d-~~G~~~~Lr--~d~T~p~aR~~a~~~~~~  384 (454)
                      .+.+|..|.+.+++.|..+||.+|.||+|+.++......   ..-|.+.| ..|+.+.||  |++|  ++|.+|...   
T Consensus         4 ~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~--~kr~la~~~---   78 (306)
T PRK09350          4 NLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYH--MKRLLAAGS---   78 (306)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHH--HHHHhhccc---
Confidence            456899999999999999999999999998876543211   11144445 679999999  9999  788777432   


Q ss_pred             ceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHH
Q psy7309         385 SMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSF  436 (454)
Q Consensus       385 ~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l  436 (454)
                       -|.||+|+|||.+....+|..||+|..++..+.+     -.+++.++-+.+
T Consensus        79 -~rvf~i~~~FR~e~~~~~H~~EFt~lE~y~~~~d-----~~dlm~~~E~li  124 (306)
T PRK09350         79 -GPIFQICKSFRNEEAGRYHNPEFTMLEWYRPHYD-----MYRLMNEVDDLL  124 (306)
T ss_pred             -cceEEecceeecCCCCCCCCcHHHhhhhhhhCCC-----HHHHHHHHHHHH
Confidence             3999999999998888899999999999988754     344555554444

>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain

Probab=99.04  E-value=1.2e-09  Score=107.56  Aligned_cols=138  Identities=11%  Similarity=-0.001  Sum_probs=110.5

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcC-
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNG-  381 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~-  381 (454)
                      |.-..+++.|++-+.+.+.++||.+|.||.|.+.+++...      .+++|++.|   +.++|+|.-..+++.+++..- 
T Consensus        49 p~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~~---~~~~L~pt~e~~~~~l~~~~~~  125 (297)
T cd00770          49 GDGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVEG---EDLYLIATAEVPLAALHRDEIL  125 (297)
T ss_pred             CHHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEecC---CCEEEeecCCHHHHHHHhcccC
Confidence            6677799999999999999999999999999999997543      257999865   679999999999999887531 


Q ss_pred             C--CCceeeEeecCccccCCCC-----CC--ccceEEEEEEEEEcCCC-CcccHHHHHHHHHHHHHhCCCCCcEEEcC
Q psy7309         382 S--IVSMKRYCIDRVFRERRVL-----GF--HPRELYECAFDIVTNTP-GVLTMGSLRRCLMGSFRRFNYGNISFAPH  449 (454)
Q Consensus       382 ~--~~~~k~~y~g~vfR~~~~~-----~g--~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~~~~l~~~~~~~~~i~i~  449 (454)
                      +  .+|+|+|++|+|||.+...     .|  |.|||.|...-++..+. +...-.+++.++.++++.||+.-..++..
T Consensus       126 s~~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~~f~~~e~~~~~~~~~l~~~~~i~~~lgl~~~~~~~~  203 (297)
T cd00770         126 EEEELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQFVFTKPEESWEELEELISNAEEILQELGLPYRVVNIC  203 (297)
T ss_pred             CHhhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEEEEECchHHHHHHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence            1  4899999999999987542     34  67899888887776542 33456668889999999999965555443

SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer.

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.02  E-value=3.1e-10  Score=104.87  Aligned_cols=48  Identities=27%  Similarity=0.374  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHHHHcCCcccCC-CCCcEEEccCCCeEEecccchhhh
Q psy7309           5 WRLLREIIEGLSHIHSQGIIHRDL-KPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         5 ~~i~~qil~gL~~LH~~giiHrDL-Kp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      ..++.|++.+|+++|++||+|||| ||+|||++.++.++|+|||+|...
T Consensus        94 ~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~  142 (218)
T PRK12274         94 LAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRG  142 (218)
T ss_pred             HHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceec
Confidence            457899999999999999999999 799999999999999999999843

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.01  E-value=2e-10  Score=108.08  Aligned_cols=46  Identities=15%  Similarity=0.273  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           6 RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         6 ~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      ....+++.+|..+|+.|++|||+||+||+++.+| ++|+|||.+...
T Consensus       139 ~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~  184 (232)
T PRK10359        139 DVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCT  184 (232)
T ss_pred             HHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCcccc
Confidence            3567999999999999999999999999999888 999999987643

>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain

Probab=98.96  E-value=3.1e-09  Score=102.83  Aligned_cols=99  Identities=16%  Similarity=0.155  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEc-CCCCeEeeC--CCCCHHHHHHHHHcCCCCceeeE
Q psy7309         313 SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMT-RGGSIVTLP--HDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       313 ~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d-~~G~~~~Lr--~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      .+|..|.+.+++.|.++||.+|+||+|+....  ....+.|.+.. ..|+.+.|+  |+++  ..|.++.+.    -|+|
T Consensus         2 ~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~--~~~~~~f~~~~~~~g~~~~L~~Spql~--~~~~~~~~~----~~vf   73 (269)
T cd00669           2 KVRSKIIKAIRDFMDDRGFLEVETPMLQKITG--GAGARPFLVKYNALGLDYYLRISPQLF--KKRLMVGGL----DRVF   73 (269)
T ss_pred             cHHHHHHHHHHHHHHHCCCEEEECCEEeccCC--ccccceEEeeecCCCCcEEeecCHHHH--HHHHHhcCC----CcEE
Confidence            36889999999999999999999999996643  22235677632 368999999  8887  555565432    2999


Q ss_pred             eecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         390 CIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       390 y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      ++|+|||.+....+|.+||+|+++|....+
T Consensus        74 ~i~~~fR~e~~~~~hl~EF~~le~e~~~~~  103 (269)
T cd00669          74 EINRNFRNEDLRARHQPEFTMMDLEMAFAD  103 (269)
T ss_pred             EEecceeCCCCCCCcccceeEEEEEEecCC
Confidence            999999999888999999999999988653

This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.

>KOG1023|consensus

Probab=98.91  E-value=8.6e-10  Score=113.56  Aligned_cols=163  Identities=25%  Similarity=0.340  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHHHHHHcCC-cccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           5 WRLLREIIEGLSHIHSQGI-IHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         5 ~~i~~qil~gL~~LH~~gi-iHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      ..++++|+.||+|||..-| .|.-|+..|++++....+||.|||+.......                       .....
T Consensus        51 ~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~~~~-----------------------~~~~~  107 (484)
T KOG1023|consen   51 LSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLLEET-----------------------AEPEA  107 (484)
T ss_pred             HHHHHHHHHHHHHHhcCcceeeeeeccccceeeeeEEEEechhhhccccccc-----------------------ccccc
Confidence            3578999999999997654 99999999999999999999999998644210                       11122


Q ss_pred             CcCcccccceecccccccccccc----ccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcC
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAM----YNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRREN  158 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~----~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~  158 (454)
                      .....-...|.|||++.......    -+.+.  |+||+              |++++|++. ..+......        
T Consensus       108 ~~~~~~~~lw~aPellr~~~~~~~~~~~~~~g--diYs~--------------~ii~~ei~~r~~~~~~~~~--------  163 (484)
T KOG1023|consen  108 HHPIRKALLWTAPELLRGALSQSLESALTQKG--DIYSF--------------GIIMYEILFRSGPFDLRNL--------  163 (484)
T ss_pred             cchhHHHHhccCHHHhcccccccccccccccC--CeehH--------------HHHHHHHHhccCccccccc--------
Confidence            22233456799999987321122    34456  99999              999999544 222111000        


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                         .... .+...++.+.....+.+...    ..   ....++...++     +.||..+|.+||+++++-.
T Consensus       164 ---~~~~-~eii~~~~~~~~~~~rP~i~----~~---~e~~~~l~~l~-----~~cw~e~P~~rPs~~~i~~  219 (484)
T KOG1023|consen  164 ---VEDP-DEIILRVKKGGSNPFRPSIE----LL---NELPPELLLLV-----ARCWEEIPEKRPSIEQIRS  219 (484)
T ss_pred             ---cCCh-HHHHHHHHhcCCCCcCcchh----hh---hhcchHHHHHH-----HHhcccChhhCccHHHHHh
Confidence               0011 22333333322222222211    00   01113344555     9999999999999997653

>KOG1166|consensus

Probab=98.91  E-value=9.1e-10  Score=121.01  Aligned_cols=99  Identities=21%  Similarity=0.368  Sum_probs=80.2

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-------CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-------EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDST   75 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-------~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (454)
                      -+..+..|++.-+++||.++|||+||||+|+||..       ...++|+|||.|..+.-                     
T Consensus       795 lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~l---------------------  853 (974)
T KOG1166|consen  795 LVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKL---------------------  853 (974)
T ss_pred             hhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeE---------------------
Confidence            36788999999999999999999999999999953       23589999998864321                     


Q ss_pred             CcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcce
Q psy7309          76 AFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGY  134 (454)
Q Consensus        76 ~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~  134 (454)
                        ...+......++|-.+-.+|+..   +..|++.+  |.|.+     +.++.+||+|-
T Consensus       854 --fp~~~~F~~~~~td~f~C~EM~~---grpWtYq~--DyfGl-----Aa~~h~mLFG~  900 (974)
T KOG1166|consen  854 --FPDGTKFKAVWHTDLFDCIEMRE---GRPWTYQI--DYFGL-----AATVHVMLFGK  900 (974)
T ss_pred             --cCCCcEEeeeeccccchhHHHhc---CCCCchhh--hhHHH-----HHHHHHHHHHH
Confidence              02345666788999999999998   89999999  99998     56666666663

>smart00090 RIO RIO-like kinase

Probab=98.88  E-value=1.9e-09  Score=102.76  Aligned_cols=49  Identities=24%  Similarity=0.525  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcC-CcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           3 RAWRLLREIIEGLSHIHSQG-IIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~g-iiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      ++..++.|++.+|++||++| |+||||||+||+++ ++.++|+|||.|...
T Consensus       149 ~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~  198 (237)
T smart00090      149 EEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVEL  198 (237)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhhcc
Confidence            35789999999999999999 99999999999999 889999999998754

>KOG0606|consensus

Probab=98.84  E-value=4.4e-09  Score=114.18  Aligned_cols=199  Identities=23%  Similarity=0.272  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcC-CC---ccccccCccCCCCCCCCcc-
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHA-GP---LARELTGYILPPIDSTAFY-   78 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~-   78 (454)
                      ++..+..+..++++||...++|||+||.|++...+++.++.|||+......-.. ..   ....+..+.... ..+... 
T Consensus       906 aRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~~vg~~~p~~~~sg~~~~~~~~~~~~-~~~~~~l  984 (1205)
T KOG0606|consen  906 ARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLSKVGLIPPTTDLSGPSSSGTPRRLSR-SERRPQL  984 (1205)
T ss_pred             ccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCccccccccccccCcCCcccccccCccccccc-ccccccc
Confidence            345667788999999999999999999999999999999999996553321110 00   011111111110 001100 


Q ss_pred             c--CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          79 S--HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        79 ~--~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                      .  ........+||+-|.+||...   +......+  |+|+.              |++++|.+.|.+            
T Consensus       985 ~~~~~~~~~~~~~t~~~laPe~~l---g~~hgs~a--d~~~~--------------g~~l~e~l~g~p------------ 1033 (1205)
T KOG0606|consen  985 SADEARRKHAVVGTPDYLAPEILL---GRRHGSAA--DWWSS--------------GVCLFEVLTGIP------------ 1033 (1205)
T ss_pred             ccchhhccccccCCCcccCCcccc---cccCCCcc--hhhhh--------------hhhhhhhhcCCC------------
Confidence            1  113355679999999999998   56666677  99999              999999655443            


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh---hhhcCcc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE---QNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~---e~l~hp~  233 (454)
                         |+.....++.+..+.+ .....|...          ...+..+.+++     ..+|..+|.+|.+|.   +.-.|+|
T Consensus      1034 ---p~na~tpq~~f~ni~~-~~~~~p~g~----------~~~s~~aq~~~-----~~ll~~~~~qr~~a~~~~e~k~~~~ 1094 (1205)
T KOG0606|consen 1034 ---PFNAETPQQIFENILN-RDIPWPEGP----------EEGSYEAQDLI-----NRLLTEEPTQRLGAKGAAEVKGHPF 1094 (1205)
T ss_pred             ---CCCCcchhhhhhcccc-CCCCCCCCc----------cccChhhhhhh-----hhhhccCchhccCcccccccccCCc
Confidence               4444444444444432 222223221          23347888999     999999999999987   8889999


Q ss_pred             cccCCCCCCCccCccccccCCCCCCC
Q psy7309         234 SLEGSSSGLSVLGSEQLLTCDHIPPP  259 (454)
Q Consensus       234 f~~~~~~~~~~~~~~~ll~~~~~~~~  259 (454)
                      |.......+      .+..++++|..
T Consensus      1095 ~~~~~~~~l------~~q~~~~~p~~ 1114 (1205)
T KOG0606|consen 1095 FQDVDWENL------ALQKAEFVPQP 1114 (1205)
T ss_pred             cCCCCcccc------ccccCccCCCC
Confidence            986544322      44455666654

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.82  E-value=4.3e-09  Score=100.40  Aligned_cols=46  Identities=24%  Similarity=0.363  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhh
Q psy7309           6 RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus         6 ~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      ..+.||+.+|.+||++||+||||||+|||++.++.++|+|||.+..
T Consensus       146 ~~~~~i~~~l~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        146 EQWQAIGQLIARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            3478999999999999999999999999999989999999998864

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.82  E-value=4.8e-09  Score=96.97  Aligned_cols=50  Identities=30%  Similarity=0.464  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      .+.+++.+++.++.++|+.||+||||||+||+++.++.++|+|||.+...
T Consensus       126 ~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~  175 (198)
T cd05144         126 DPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQMVST  175 (198)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEECCccccC
Confidence            45678999999999999999999999999999999999999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK10345 hypothetical protein; Provisional

Probab=98.79  E-value=4.5e-09  Score=98.12  Aligned_cols=46  Identities=22%  Similarity=0.197  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHH-HHHHHcCCcccCCCCCcEEEccC----CCeEEecccchh
Q psy7309           5 WRLLREIIEGL-SHIHSQGIIHRDLKPVNIFIDYE----DHVKIGDFGLAT   50 (454)
Q Consensus         5 ~~i~~qil~gL-~~LH~~giiHrDLKp~NILl~~~----~~vKL~DFGla~   50 (454)
                      ..+++|++.++ +|||+++|+||||||+|||++..    +.++|+||+.+.
T Consensus       107 ~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~  157 (210)
T PRK10345        107 VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGES  157 (210)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCc
Confidence            45688999888 99999999999999999999743    379999955554

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.79  E-value=5.9e-09  Score=95.09  Aligned_cols=50  Identities=30%  Similarity=0.438  Sum_probs=46.4

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      ++++.++.|++.++.++|. +||+|+||||+||+++ ++.++|+|||.|...
T Consensus       114 ~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~  164 (187)
T cd05119         114 EDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEI  164 (187)
T ss_pred             ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcEEEEECcccccc
Confidence            3578899999999999999 9999999999999999 899999999999754

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.64  E-value=3.9e-08  Score=91.47  Aligned_cols=47  Identities=38%  Similarity=0.552  Sum_probs=43.9

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhh
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      ...++.+++.+|.++|+.|++|+|+||.|||++ ++.++|+|||++..
T Consensus        97 ~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         97 ELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            568999999999999999999999999999999 78899999998874

>KOG2137|consensus

Probab=98.62  E-value=2e-07  Score=98.00  Aligned_cols=201  Identities=16%  Similarity=0.186  Sum_probs=121.0

Q ss_pred             HHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCCCcCc
Q psy7309           9 REIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQ   87 (454)
Q Consensus         9 ~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (454)
                      -++..||.|+|. .++||+.|.|++|.++.++..||+-|+.+........    .. .+.+.++           ..--.
T Consensus       106 ~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~----~p-~~~yd~~-----------lp~~~  169 (700)
T KOG2137|consen  106 GNVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTE----YP-FSEYDPP-----------LPLLL  169 (700)
T ss_pred             hcccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCc----cc-cccCCCC-----------CChhh
Confidence            345589999996 5899999999999999999999999998874321000    00 0001111           11112


Q ss_pred             ccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCCchhh
Q psy7309          88 VGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQ  167 (454)
Q Consensus        88 ~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~~~~~  167 (454)
                      .-...|.|||++.   ...-+...  |++|+              |+++|.++.++-.-.       ...+.+.....  
T Consensus       170 ~~~~~f~apE~~~---~~~~~~~s--d~fSl--------------G~li~~i~~~gk~i~-------~a~~~~~~~~~--  221 (700)
T KOG2137|consen  170 QPHLNFLAPEYLL---GTTNTPAS--DVFSL--------------GVLIYTIYNGGKSII-------AANGGLLSYSF--  221 (700)
T ss_pred             ccCcccccchhhc---cccccccc--cceee--------------eeEEEEEecCCcchh-------hccCCcchhhh--
Confidence            3346799999998   45555666  99999              999999884332110       00000000000  


Q ss_pred             hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCCCCccCc
Q psy7309         168 KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSGLSVLGS  247 (454)
Q Consensus       168 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~~~~~~~  247 (454)
                        -..........+..             ...++..+=+     .++|..|+..||++.+++..|||....-.       
T Consensus       222 --~~~~~~~~~~~~s~-------------~~p~el~~~l-----~k~l~~~~~~rp~~~~l~~~~ff~D~~~~-------  274 (700)
T KOG2137|consen  222 --SRNLLNAGAFGYSN-------------NLPSELRESL-----KKLLNGDSAVRPTLDLLLSIPFFSDPGLK-------  274 (700)
T ss_pred             --hhcccccccccccc-------------cCcHHHHHHH-----HHHhcCCcccCcchhhhhcccccCCchhh-------
Confidence              00000011111111             2225666667     99999999999999999999999977665       


Q ss_pred             cccccCCCCCC-CCcchHHHHHHHHHHhcCCCChh
Q psy7309         248 EQLLTCDHIPP-PLVGETVLQDMVRQTLSNPQSKG  281 (454)
Q Consensus       248 ~~ll~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~  281 (454)
                       .|..-+.+++ ...+...+-+.+..++..-....
T Consensus       275 -aLrfLD~l~~kdn~qKs~Flk~Ls~~ip~fp~rv  308 (700)
T KOG2137|consen  275 -ALRFLDDLPQKDNSQKSSFLKGLSKLIPTFPARV  308 (700)
T ss_pred             -hhhhcccccccCcHHHHHHHHHHHHhhccCCHHH
Confidence             3333344444 23455566666666666555443

>KOG0195|consensus

Probab=98.61  E-value=3.2e-08  Score=92.86  Aligned_cols=147  Identities=20%  Similarity=0.242  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC-Cc-ccCCCCCcEEEccCCCeEE--ecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG-II-HRDLKPVNIFIDYEDHVKI--GDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g-ii-HrDLKp~NILl~~~~~vKL--~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      +++.+++.+++.|++|||+.. +| .--|....+++|.+-+.+|  +|--++.                           
T Consensus       289 sqav~faldiargmaflhslep~ipr~~lns~hvmidedltarismad~kfsf---------------------------  341 (448)
T KOG0195|consen  289 SQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHVMIDEDLTARISMADTKFSF---------------------------  341 (448)
T ss_pred             chHHHHHHHHHhhHHHHhhcchhhhhhhcccceEEecchhhhheecccceeee---------------------------
Confidence            468899999999999999863 33 3357777888888766554  3322221                           


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                           ...+..-.|.||+||.+++.....--..+  ||||+              .+++||+.+...             
T Consensus       342 -----qe~gr~y~pawmspealqrkped~n~raa--dmwsf--------------aillwel~trev-------------  387 (448)
T KOG0195|consen  342 -----QEVGRAYSPAWMSPEALQRKPEDLNIRAA--DMWSF--------------AILLWELNTREV-------------  387 (448)
T ss_pred             -----eccccccCcccCCHHHHhcCchhcchhhh--hHHHH--------------HHHHHHhhcccc-------------
Confidence                 11223557899999999842111122344  99999              999999876433             


Q ss_pred             CCCCCCchhhhhhhh-hccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         158 NGPSTGSNVQKSLQK-FQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                        ||.+.+..+.-.+ -..+-+..+|+..             +.....|+     .-|++-||.+||..+.++
T Consensus       388 --pfadlspmecgmkialeglrv~ippgi-------------s~hm~klm-----~icmnedpgkrpkfdmiv  440 (448)
T KOG0195|consen  388 --PFADLSPMECGMKIALEGLRVHIPPGI-------------SRHMNKLM-----NICMNEDPGKRPKFDMIV  440 (448)
T ss_pred             --ccccCCchhhhhhhhhccccccCCCCc-------------cHHHHHHH-----HHHhcCCCCcCCCcceeh
Confidence              3333332222111 1123344455443             25666787     999999999999988554

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.58  E-value=5.2e-08  Score=89.80  Aligned_cols=45  Identities=40%  Similarity=0.663  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhh
Q psy7309           6 RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus         6 ~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      .++.|++.+|.+||+.|++|+|+||.||+++ ++.++++|||++..
T Consensus        94 ~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~  138 (199)
T TIGR03724        94 ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKY  138 (199)
T ss_pred             HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcC
Confidence            6899999999999999999999999999999 88999999999874

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.58  E-value=4.6e-08  Score=104.35  Aligned_cols=47  Identities=32%  Similarity=0.553  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhh
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      ...++.|++.+|.+||+.|++||||||+|||+ .++.++|+|||+|+.
T Consensus       430 ~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~  476 (535)
T PRK09605        430 NPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKY  476 (535)
T ss_pred             HHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCccccc
Confidence            46789999999999999999999999999999 578899999999974

>PLN02837 threonine-tRNA ligase

Probab=98.55  E-value=2.8e-07  Score=99.35  Aligned_cols=143  Identities=10%  Similarity=0.015  Sum_probs=113.0

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      |.-..+++.|++-+++...++||.+|.||.|.+.+++...      .++||++.|.+++.++|||---.-++-+.+....
T Consensus       244 p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~  323 (614)
T PLN02837        244 PKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLH  323 (614)
T ss_pred             chHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccC
Confidence            6667789999999999999999999999999999987643      3689999998899999999766555655553211


Q ss_pred             ---CCceeeEeecCccccCCCC--CC--ccceEEEEEEEEEcCCCC-cccHHHHHHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         383 ---IVSMKRYCIDRVFRERRVL--GF--HPRELYECAFDIVTNTPG-VLTMGSLRRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       383 ---~~~~k~~y~g~vfR~~~~~--~g--~~rE~~Q~g~eiig~~~~-~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                         .+|+|++.+|+|||++..+  .|  |-|||.|.+.-++..+.. ...-.+++.+..++++.||+..+.+.++.|
T Consensus       324 SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~f~~~~q~~~e~~~~l~~~~~~~~~lg~~~~~~~~~t~  400 (614)
T PLN02837        324 SYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHIFCLEDQIKDEIRGVLDLTEEILKQFGFSKYEINLSTR  400 (614)
T ss_pred             ChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEEEeCHHHHHHHHHHHHHHHHHHHHHcCCCeEEEEecCC
Confidence               4899999999999997642  23  789999999999876521 122344777888999999997788887765

>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain

Probab=98.53  E-value=5.8e-07  Score=87.54  Aligned_cols=99  Identities=17%  Similarity=0.201  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEc--CCCCeEeeCCCCCHHHHHHHHHcCCCCceeeEee
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMT--RGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCI  391 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d--~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~y~  391 (454)
                      +|..|...+++.|..+||.+|+||+|.....-..  .. |.+..  ..|....|+----+-.=|.++.    .--|+||+
T Consensus         3 ~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~--~~-f~~~~~~~~~~~~~L~~Spql~lk~ll~~----g~~~v~~i   75 (280)
T cd00777           3 LRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGA--RD-FLVPSRLHPGKFYALPQSPQLFKQLLMVS----GFDRYFQI   75 (280)
T ss_pred             hHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCC--CC-ceeccccCCCceeecccCHHHHHHHHHhc----CcCcEEEe
Confidence            6889999999999999999999999976543211  11 33222  2344444553322222233332    23599999


Q ss_pred             cCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         392 DRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       392 g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      |+|||.++.+.+|..||+|+++|+.+.+
T Consensus        76 ~~~fR~e~~~~~r~~Ef~~~e~e~~~~~  103 (280)
T cd00777          76 ARCFRDEDLRADRQPEFTQIDIEMSFVD  103 (280)
T ss_pred             ccceeCCCCCCCccceeEEeEeeeccCC
Confidence            9999999988899999999999998764

Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.

>KOG0601|consensus

Probab=98.53  E-value=1.6e-08  Score=104.50  Aligned_cols=159  Identities=27%  Similarity=0.319  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHH----HHHHHHHcCCcccCCCCCcEEEccC-CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           3 RAWRLLREIIE----GLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         3 ~i~~i~~qil~----gL~~LH~~giiHrDLKp~NILl~~~-~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      .+|..+.+.+.    ||.++|..+|+|-|+||+||++..+ ..++++|||+...+.....                    
T Consensus       219 ~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~--------------------  278 (524)
T KOG0601|consen  219 LLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNF--------------------  278 (524)
T ss_pred             hhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeEEccCCcc--------------------
Confidence            57888889998    9999999999999999999999999 7899999999987643211                    


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                      ...........|...|++||+..    ..++...  |++|+              |.++.+...+-              
T Consensus       279 ~~~~~~~~r~~~~~~Y~~ke~~~----~l~~~~~--di~sl--------------~ev~l~~~l~~--------------  324 (524)
T KOG0601|consen  279 SSVFKVSKRPEGDCIYAAKELLN----GLATFAS--DIFSL--------------GEVILEAILGS--------------  324 (524)
T ss_pred             ccceeeeecCCCCceEeChhhhc----cccchHh--hhcch--------------hhhhHhhHhhc--------------
Confidence            01122223346778899999986    6678888  99999              77776621100              


Q ss_pred             CCCCCC--chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         158 NGPSTG--SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       158 ~~p~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ..|..+  ..+..       .....+|...        . ...+.+....+     ..|++.+|..|++++.+++|++..
T Consensus       325 ~~~~~g~~~~W~~-------~r~~~ip~e~--------~-~~~s~~l~~~~-----~~~~d~~~~~~~~~q~~~~l~~i~  383 (524)
T KOG0601|consen  325 HLPSVGKNSSWSQ-------LRQGYIPLEF--------C-EGGSSSLRSVT-----SQMLDEDPRLRLTAQILTALNVIH  383 (524)
T ss_pred             ccccCCCCCCccc-------cccccCchhh--------h-cCcchhhhhHH-----HHhcCcchhhhhHHHHHhcccccc
Confidence            001111  00000       0000111111        0 11113333456     899999999999999999999987


Q ss_pred             c
Q psy7309         236 E  236 (454)
Q Consensus       236 ~  236 (454)
                      +
T Consensus       384 s  384 (524)
T KOG0601|consen  384 S  384 (524)
T ss_pred             c
Confidence            4

>TIGR00414 serS seryl-tRNA synthetase

Probab=98.52  E-value=6.4e-07  Score=92.14  Aligned_cols=138  Identities=9%  Similarity=0.028  Sum_probs=107.9

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      |.-..+.+.|++-+.+.+.++||.+|.+|.|-+.+++...      .+++|.+-|   +.++|+|=--.|++-+.+..-.
T Consensus       170 p~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~~---~~~~L~pTsE~~~~~~~~~~i~  246 (418)
T TIGR00414       170 NDGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLED---TDLYLIPTAEVPLTNLHRNEIL  246 (418)
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEecC---CCEEEEeCCcHHHHHHHhCcCC
Confidence            5666789999999999999999999999999999987543      268998854   4589999988999988764311


Q ss_pred             ---CCceeeEeecCccccCCCCCC-------ccceEEEEEEEEEcCCC-CcccHHHHHHHHHHHHHhCCCCCcEEEcC
Q psy7309         383 ---IVSMKRYCIDRVFRERRVLGF-------HPRELYECAFDIVTNTP-GVLTMGSLRRCLMGSFRRFNYGNISFAPH  449 (454)
Q Consensus       383 ---~~~~k~~y~g~vfR~~~~~~g-------~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~~~~l~~~~~~~~~i~i~  449 (454)
                         .+|+|+|.+|+|||.+....|       |-|||.+...-++..+. +...-.+++.++.++++.||+.-..+.+.
T Consensus       247 s~~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~~~~~~~i~~~Lglp~r~v~~~  324 (418)
T TIGR00414       247 EEEELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVELVKFCKPEESAEELEEMTSDAEQILQELELPYRVVNLC  324 (418)
T ss_pred             ChHhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeEEEEcCHHHHHHHHHHHHHHHHHHHHHcCCceEEEecC
Confidence               479999999999999764333       77999999998887652 22345557888999999999953334443

This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.

>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6

Probab=98.46  E-value=7.7e-07  Score=84.91  Aligned_cols=126  Identities=16%  Similarity=0.133  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHHHHHhcCCccccCCCcccccc-ccc----------cccccEEEEcCCC---CeEeeCCCCCHHHHHHHH
Q psy7309         313 SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNS-LTA----------TSETTASVMTRGG---SIVTLPHDLRIPFARYLA  378 (454)
Q Consensus       313 ~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~-~~~----------~~~~~~~~~d~~G---~~~~Lr~d~T~p~aR~~a  378 (454)
                      .-.+.++++++++|...||.++..|.++.... |..          ....+|-+.++.+   +..+||.-.|.-.+|.+.
T Consensus        17 hp~~~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~   96 (247)
T PF01409_consen   17 HPITKFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLN   96 (247)
T ss_dssp             SHHHHHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHH
Confidence            35788999999999999999999999975332 211          1245677766654   789999999999999984


Q ss_pred             HcCCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhC-CCC
Q psy7309         379 QNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRF-NYG  442 (454)
Q Consensus       379 ~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~-~~~  442 (454)
                      .+. ..|.|.+++|+|||.+.....+..+|+|.+.=+++..   ..-.++..++.++++.+ |.+
T Consensus        97 ~~~-~~p~kif~iG~VyR~D~~D~th~~~f~Qleg~~~~~~---~~f~~Lk~~l~~l~~~lfG~~  157 (247)
T PF01409_consen   97 KHR-PPPIKIFEIGKVYRRDEIDATHLPEFHQLEGLVVDKN---VTFEDLKGTLEELLKELFGID  157 (247)
T ss_dssp             TTS-HSSEEEEEEEEEESSSCSBSSBESEEEEEEEEEEETT---E-HHHHHHHHHHHHHHHHTTT
T ss_pred             Hhc-CCCeEEEecCceEecCCcccccCccceeEeeEEEecc---cchhHHHHHHHHHHHHHhhcc
Confidence            343 6899999999999998877888889999999888865   23455777777788888 875

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....

>PRK04173 glycyl-tRNA synthetase; Provisional

Probab=98.45  E-value=1.4e-06  Score=90.68  Aligned_cols=143  Identities=10%  Similarity=0.082  Sum_probs=102.1

Q ss_pred             chhhHHHHHHHHHHHHHHHh--cCCccccCCCccccccccccc------cccEEEE------------------------
Q psy7309         309 SANFSLLESTGDKLRRIFQL--HGGAHFQTPLLTPLNSLTATS------ETTASVM------------------------  356 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~--~G~~~i~tp~le~~~~~~~~~------~~~~~~~------------------------  356 (454)
                      |.-..+++.|++.+++.|..  +||.+|+||.+.+.+++..++      +.||...                        
T Consensus        35 P~G~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~~~l~~~SGH~~~f~d~m~~~~~~~~~~r~d~~~~~~~~~~~~~~~  114 (456)
T PRK04173         35 PLGVELKNNIKRAWWKSFVQEREDVVGIDSPIIMPPEVWEASGHVDNFSDPLVECKKCKKRYRADHLIEELGIDAEGLSN  114 (456)
T ss_pred             hhhHHHHHHHHHHHHHHHHhccCCEEEEeccccCCHHHHhhcCCccccCCceeEeCCCCCEeechhhhHHHhhhhccccH
Confidence            66678999999999999998  899999999999988875532      3444432                        


Q ss_pred             ---------------------------------------cCCCCeEeeCCCCCHH----HHHHHHHcCCCCceeeEeecC
Q psy7309         357 ---------------------------------------TRGGSIVTLPHDLRIP----FARYLAQNGSIVSMKRYCIDR  393 (454)
Q Consensus       357 ---------------------------------------d~~G~~~~Lr~d~T~p----~aR~~a~~~~~~~~k~~y~g~  393 (454)
                                                             +.++..+.|||+..-.    +.+.+-.....+|+|++.+|+
T Consensus       115 ~~~~~~~~~~~m~cp~~~~~~~~~~~~f~l~f~~~~g~~~~~~~~~~lRpetaqg~~~~f~~~~~syr~dLPlr~aq~g~  194 (456)
T PRK04173        115 EELKELIRENDIKCPECGGENWTEVRQFNLMFKTFIGPVEDSKSLGYLRPETAQGIFVNFKNVLRTARKKLPFGIAQIGK  194 (456)
T ss_pred             HHHHHHHHHhCCCCCCCCCCCCcCccchhhceeecccCccCCCcceeeccccchhHHHHHHHHHHhccccCCeeeeEEch
Confidence                                                   1223345677765442    223222222158999999999


Q ss_pred             ccccCC-CCCC--ccceEEEEEEEEEcCCCCc-ccHHHHHHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         394 VFRERR-VLGF--HPRELYECAFDIVTNTPGV-LTMGSLRRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       394 vfR~~~-~~~g--~~rE~~Q~g~eiig~~~~~-~~d~e~~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                      |||++. +..|  |-|||.|..++|+..+... .--..++.++.+++..+|++.+.+++..+
T Consensus       195 ~~RnE~s~~~gL~RvReF~q~e~hiF~~peq~~~e~~~~l~~~~~~l~~lG~~~~~~~~s~~  256 (456)
T PRK04173        195 SFRNEITPRNFIFRTREFEQMELEFFVKPGTDNEWFAYWIELRKNWLLDLGIDPENLRFREH  256 (456)
T ss_pred             hHhCccCCCCCceeeceeeeeEEEEEECcChHHHHHHHHHHHHHHHHHHcCCCccceEEEec
Confidence            999975 3345  7799999999999875322 22344677889999999998777777654

>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain

Probab=98.41  E-value=5.1e-06  Score=78.15  Aligned_cols=119  Identities=19%  Similarity=0.194  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCccccc-cccc---ccc-------ccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCC
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLN-SLTA---TSE-------TTASVMTRGGSIVTLPHDLRIPFARYLAQNGSI  383 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~-~~~~---~~~-------~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~  383 (454)
                      .+.+.+++++++..+||.|+.|++|...+ .+..   ...       ..+++.++-  .-+||+.++..+.+.++.|  .
T Consensus         3 ~~~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l~NP~--~~~LR~sLlp~LL~~l~~N--~   78 (218)
T cd00496           3 LNKVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYINDPA--RLLLRTHTSAVQARALAKL--K   78 (218)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEECCCc--eEEEeccCcHHHHHHHHhc--C
Confidence            35678889999999999999999997662 2211   111       245666665  7899999999999999988  5


Q ss_pred             CceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Q psy7309         384 VSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFN  440 (454)
Q Consensus       384 ~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~  440 (454)
                      .+.|+|++|+|||.++...++..|+.+.++-+.|..   ....++..++..+++.+|
T Consensus        79 ~~~~lFEiG~Vf~~~~~~~~~~~E~~~l~~~~~g~~---~df~dlkg~ve~ll~~l~  132 (218)
T cd00496          79 PPIRIFSIGRVYRNDEIDATHLPEFHQIEGLVVDKG---LTFADLKGTLEEFAKELF  132 (218)
T ss_pred             CCeeEEEEcCeEECCCCCCCcCCccEEEEEEEECCC---CCHHHHHHHHHHHHHHhc
Confidence            799999999999986533344449999999999954   235666667777788887

PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.

>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated

Probab=98.41  E-value=3.8e-06  Score=82.86  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCcccccc-ccc----------cccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLNS-LTA----------TSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~-~~~----------~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      -...+.+.|+++|...||.++.+|.++.... |..          +...+|.+    ....+||.-.|.-.+|.++. . 
T Consensus       109 Pl~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI----~~~~lLRThTSp~qir~L~~-~-  182 (339)
T PRK00488        109 PITQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYI----DDGLLLRTHTSPVQIRTMEK-Q-  182 (339)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEE----cCCceeeccCcHHHHHHHHh-c-
Confidence            5788999999999999999999999975332 211          11346666    34589999999999999886 3 


Q ss_pred             CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEc
Q psy7309         383 IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAP  448 (454)
Q Consensus       383 ~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i  448 (454)
                      ..|+|.+++|+|||.+.....|..+|+|...=+++..   ..-+++..++..+++.+.-.+..+++
T Consensus       183 ~~Pirif~~G~VyR~D~~DatH~~~FhQleglvvd~~---vtf~dLK~~L~~fl~~~fg~~~~~R~  245 (339)
T PRK00488        183 KPPIRIIAPGRVYRNDSDDATHSPMFHQVEGLVVDKN---ISFADLKGTLEDFLKAFFGEDVKIRF  245 (339)
T ss_pred             CCCeEEEEeeeEEEcCCCCcccCcceeeEEEEEEeCC---CCHHHHHHHHHHHHHHHcCCCCeEEe
Confidence            5899999999999998767889999999999999876   34577777888888877223455543

>PRK03991 threonyl-tRNA synthetase; Validated

Probab=98.38  E-value=2.2e-06  Score=91.91  Aligned_cols=137  Identities=11%  Similarity=0.021  Sum_probs=107.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      |.-..+++.|.+-+.+.+.++||.+|.||.+...+.....      .+++|.+ +.+++.++|||---.+.+-+......
T Consensus       224 P~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v-~~~~e~l~Lrp~~c~~~~~~~~~~~~  302 (613)
T PRK03991        224 PKGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRV-KSDKKDLMLRFAACFGQFLMLKDMTI  302 (613)
T ss_pred             cHHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEe-cCCCceEEEecCCCHHHHHHHhCCcC
Confidence            6777799999999999999999999999998666554321      3689987 55578999999998888866553221


Q ss_pred             ---CCceeeEeecC-ccccCCCC--CC--ccceEEEEEEEEEcCCCCccc---HHHHHHHHHHHHHhCCCCCcEEEc
Q psy7309         383 ---IVSMKRYCIDR-VFRERRVL--GF--HPRELYECAFDIVTNTPGVLT---MGSLRRCLMGSFRRFNYGNISFAP  448 (454)
Q Consensus       383 ---~~~~k~~y~g~-vfR~~~~~--~g--~~rE~~Q~g~eiig~~~~~~~---d~e~~~~~~~~l~~~~~~~~~i~i  448 (454)
                         .+|+|+|.+|+ +||++..+  .|  |-|||+|-+.-++..+ ...+   -.+++.++.++++.||+. |.+.+
T Consensus       303 SyrdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~~-~eqa~~e~~~~l~~~~~i~~~lGl~-~~~~~  377 (613)
T PRK03991        303 SYKNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCKD-MEQAMEEFEKQYEMILETGEDLGRD-YEVAI  377 (613)
T ss_pred             chhhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEECC-HHHHHHHHHHHHHHHHHHHHHcCCC-eEEEe
Confidence               48999999999 99998643  23  7899999999999874 2333   344778889999999984 66654

>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit

Probab=98.37  E-value=3.6e-06  Score=82.62  Aligned_cols=121  Identities=17%  Similarity=0.158  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCcccc-cccc---ccc-------cccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPL-NSLT---ATS-------ETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~-~~~~---~~~-------~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      -...+.++++++|...||.++.+|.|+.. ..+.   ...       ..++.+.    +..+||+.++..+.|.++.|.+
T Consensus        73 p~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~----d~~vLRtsl~p~ll~~l~~N~~  148 (294)
T TIGR00468        73 PLTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK----DRLLLRTHTTAVQLRTMEENEK  148 (294)
T ss_pred             HHHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec----CCcceecccHHHHHHHHHhcCC
Confidence            46788899999999999999999999876 2221   111       1445554    4678999999999999998753


Q ss_pred             CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCC
Q psy7309         383 IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYG  442 (454)
Q Consensus       383 ~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~  442 (454)
                       .|.|+|.+|+|||.+.....+..||.|.++-+++..   ..-.++-.++..++..+|++
T Consensus       149 -~pirlFEiGrVfr~d~~d~~~~pef~ql~gl~~~~~---~~f~dLKg~le~ll~~l~~~  204 (294)
T TIGR00468       149 -PPIRIFSPGRVFRNDTVDATHLPEFHQVEGLVIDKN---VSFTNLKGFLEEFLKKMFGE  204 (294)
T ss_pred             -CCceEEEecceEEcCCCCCccCChhhEEEEEEECCC---CCHHHHHHHHHHHHHHhCCC
Confidence             899999999999986533344449999988888843   23566777777788888874

Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment.

>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain

Probab=98.35  E-value=2.3e-06  Score=85.19  Aligned_cols=102  Identities=18%  Similarity=0.172  Sum_probs=75.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeE
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      .-+.++.+|.+.+++.|.++||.+|+||+|+....=  ...+.|++ +--|+.+-|+--.-+-.=+.++.     --|.|
T Consensus        22 ~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e--~~~~~f~~-~~~~~~~yL~~Spql~lk~l~~~-----~~~vf   93 (322)
T cd00776          22 AIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTE--GGAELFKV-SYFGKPAYLAQSPQLYKEMLIAA-----LERVY   93 (322)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCC--ccCCcccc-ccCCCcceecCCHHHHHHHHHHh-----hhhhE
Confidence            344589999999999999999999999999985431  22344544 44567777775555555554442     34999


Q ss_pred             eecCccccCCCCC-CccceEEEEEEEEEcCC
Q psy7309         390 CIDRVFRERRVLG-FHPRELYECAFDIVTNT  419 (454)
Q Consensus       390 y~g~vfR~~~~~~-g~~rE~~Q~g~eiig~~  419 (454)
                      ++|+|||.+.... .|..||+++.+|..+..
T Consensus        94 ~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~  124 (322)
T cd00776          94 EIGPVFRAEKSNTRRHLSEFWMLEAEMAFIE  124 (322)
T ss_pred             EeccccccCCCCcCCCcceeeccceeeeccC
Confidence            9999999976443 57789999999999874

Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.

>PRK05431 seryl-tRNA synthetase; Provisional

Probab=98.30  E-value=5.4e-06  Score=85.53  Aligned_cols=138  Identities=11%  Similarity=0.055  Sum_probs=105.7

Q ss_pred             chhhHHHHHHHHHHHHHHH-hcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcC
Q psy7309         309 SANFSLLESTGDKLRRIFQ-LHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNG  381 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~-~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~  381 (454)
                      |.-..+.+.|++-+.+... ++||.+|.+|.|.+.+++...      .+++|++-   ++.++|+|=--.|++-+.+..-
T Consensus       167 p~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~---~~~~~L~pTsE~~l~~l~~~~~  243 (425)
T PRK05431        167 GDGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE---DDDLYLIPTAEVPLTNLHRDEI  243 (425)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec---CCCEEEEeCCcHHHHHHHhccc
Confidence            4555678888888777777 999999999999999987543      26799884   4679999999999998877432


Q ss_pred             C---CCceeeEeecCccccCCCCC-----C--ccceEEEEEEEEEcCCC-CcccHHHHHHHHHHHHHhCCCCCcEE-EcC
Q psy7309         382 S---IVSMKRYCIDRVFRERRVLG-----F--HPRELYECAFDIVTNTP-GVLTMGSLRRCLMGSFRRFNYGNISF-APH  449 (454)
Q Consensus       382 ~---~~~~k~~y~g~vfR~~~~~~-----g--~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~~~~l~~~~~~~~~i-~i~  449 (454)
                      .   .+|+|+|.++++||++....     |  |.|||.+...-++..+. +...-.+++.++.++++.||+. |.+ .+.
T Consensus       244 ~s~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~~f~~~e~s~~~~~~~l~~~~~i~~~Lglp-yr~v~~~  322 (425)
T PRK05431        244 LDEEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELVKFTKPEDSYAELEELTANAEEILQKLELP-YRVVLLC  322 (425)
T ss_pred             CCHHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEEEEECHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEEcC
Confidence            1   47999999999999976432     3  67899999888887652 2234455788899999999995 444 443


Q ss_pred             c
Q psy7309         450 P  450 (454)
Q Consensus       450 ~  450 (454)
                      .
T Consensus       323 s  323 (425)
T PRK05431        323 T  323 (425)
T ss_pred             C
Confidence            3

>KOG1266|consensus

Probab=98.29  E-value=5.3e-07  Score=87.08  Aligned_cols=159  Identities=20%  Similarity=0.278  Sum_probs=97.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           3 RAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .-++|+-||+.||.|||++.  |+|..+...-|++..+|-+||+--.-.....                     +.+...
T Consensus       177 ~wkkw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~ngLIkig~~ap~s~h~---------------------s~~~~~  235 (458)
T KOG1266|consen  177 AWKKWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAPDSTHP---------------------SVNSTR  235 (458)
T ss_pred             HHHHHHHHHHhhhhhhhccCCccccCCcchhheeecCCceEEecccCccccch---------------------hhhhhh
Confidence            35789999999999999985  9999999999999999988875321111000                     000011


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........|-++|.|||.-.   ...-+..+  |||++              |....||.-+..             . |
T Consensus       236 ~~Ek~~~~~~~g~~a~~sg~---~tn~~~a~--dIy~f--------------gmcAlemailEi-------------q-~  282 (458)
T KOG1266|consen  236 EAEKSVNTSLPGFSAPESGT---TTNTTGAS--DIYKF--------------GMCALEMAILEI-------------Q-S  282 (458)
T ss_pred             HhhhhccccCCccccCCcCc---ccccccch--hhhhh--------------hHHHHHHHHhee-------------c-c
Confidence            11222345667899999843   23334444  99999              866666422111             0 0


Q ss_pred             CCCc---hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         161 STGS---NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       161 ~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      ..+.   ..+....+...                    .........++     ..||+-.|..||+|++++.||..-+.
T Consensus       283 tnseS~~~~ee~ia~~i~--------------------~len~lqr~~i-----~kcl~~eP~~rp~ar~llfHpllfeV  337 (458)
T KOG1266|consen  283 TNSESKVEVEENIANVII--------------------GLENGLQRGSI-----TKCLEGEPNGRPDARLLLFHPLLFEV  337 (458)
T ss_pred             CCCcceeehhhhhhhhee--------------------eccCccccCcC-----cccccCCCCCCcchhhhhcCceeeec
Confidence            0000   01111111100                    01124445677     99999999999999999999987766


Q ss_pred             CCC
Q psy7309         238 SSS  240 (454)
Q Consensus       238 ~~~  240 (454)
                      ...
T Consensus       338 hsl  340 (458)
T KOG1266|consen  338 HSL  340 (458)
T ss_pred             chH
Confidence            553

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.26  E-value=9.3e-07  Score=76.33  Aligned_cols=49  Identities=27%  Similarity=0.344  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHHHHHHHc---CCcccCCCCCcEEEccCCCeEEecccchhh
Q psy7309           3 RAWRLLREIIEGLSHIHSQ---GIIHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~---giiHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      ....++.+++.+|+++|..   +++|+|+||+||+++..+.++++|||.+..
T Consensus        87 ~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          87 EKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            3467889999999999984   799999999999999989999999999874

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.19  E-value=1.6e-06  Score=79.81  Aligned_cols=49  Identities=12%  Similarity=0.218  Sum_probs=43.2

Q ss_pred             hHHHHHHHHHHHHHHH-HHcCCcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           3 RAWRLLREIIEGLSHI-HSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         3 ~i~~i~~qil~gL~~L-H~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      ++..+..|++.+|..+ |+.||||+||+|.|||++ ++.+.|+|||.|...
T Consensus       125 ~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~~-~~~v~iIDF~qav~~  174 (197)
T cd05146         125 EMKNAYYQVLSMMKQLYKECNLVHADLSEYNMLWH-DGKVWFIDVSQSVEP  174 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEE-CCcEEEEECCCceeC
Confidence            3567789999999998 899999999999999997 577999999988744

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=98.19  E-value=5.4e-06  Score=86.03  Aligned_cols=117  Identities=16%  Similarity=0.156  Sum_probs=88.4

Q ss_pred             HhCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCe
Q psy7309         289 CFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSI  362 (454)
Q Consensus       289 ~f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~  362 (454)
                      +-.++..+.--++       |--+.++++|.+.+++-+.+.|++++--|+|.|.++-..+      ++++|++.|.+++.
T Consensus        31 ~i~~~~~G~y~~l-------P~g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~  103 (500)
T COG0442          31 MIRKPVKGLYVWL-------PLGLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRP  103 (500)
T ss_pred             ceecccCceEEEC-------ccHHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCce
Confidence            3344444444444       8888899999999999999999999999999995543332      37899999999999


Q ss_pred             EeeCCCCCHHHHHH----HHHcCCCCceeeEeecCccccCCC-CC--CccceEEEEEE
Q psy7309         363 VTLPHDLRIPFARY----LAQNGSIVSMKRYCIDRVFRERRV-LG--FHPRELYECAF  413 (454)
Q Consensus       363 ~~Lr~d~T~p~aR~----~a~~~~~~~~k~~y~g~vfR~~~~-~~--g~~rE~~Q~g~  413 (454)
                      ++|||-----|.-+    +.+.. .+|+++|++.++||++.. ..  -|.|||+--+.
T Consensus       104 l~L~PTsEe~it~~~~~~i~SYk-dLPl~lYQi~~kfRdE~rpr~gllR~REF~mkda  160 (500)
T COG0442         104 LALRPTSEEVITDMFRKWIRSYK-DLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDA  160 (500)
T ss_pred             eeeCCCcHHHHHHHHHHHhhhhh-hCCcceeeeeeEEeccccCCCCccchheeeeccc
Confidence            99999654433333    43444 799999999999999653 22  46789974433

>PLN02678 seryl-tRNA synthetase

Probab=98.13  E-value=1.3e-05  Score=82.66  Aligned_cols=133  Identities=11%  Similarity=0.047  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc---CC
Q psy7309         312 FSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQN---GS  382 (454)
Q Consensus       312 ~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~---~~  382 (454)
                      ..+...+.+-+.+....+||.+|.||.|...+++...      .+++|++.+. |..+.|-+=.-+|++=+.+..   ..
T Consensus       174 a~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~-~~~~yLi~TaE~~l~~~h~~~~~s~~  252 (448)
T PLN02678        174 VLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGE-GDDKYLIATSEQPLCAYHRGDWIDPK  252 (448)
T ss_pred             HHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCC-CCceeeecccccccChHHhcccCCHH
Confidence            4577788888889999999999999999998887543      3689998543 345556652223555443311   11


Q ss_pred             CCceeeEeecCccccCCCCCC-------ccceEEEEEEEEEcCCC---CcccHHHHHHHHHHHHHhCCCCCcEE
Q psy7309         383 IVSMKRYCIDRVFRERRVLGF-------HPRELYECAFDIVTNTP---GVLTMGSLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       383 ~~~~k~~y~g~vfR~~~~~~g-------~~rE~~Q~g~eiig~~~---~~~~d~e~~~~~~~~l~~~~~~~~~i  446 (454)
                      .+|+|++.++.|||++....|       |-|+|.+...=.+..+.   +...-.|++..+.++|..||+ .|.+
T Consensus       253 eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f~~~~pe~~~s~~~~e~~l~~~~~i~~~L~l-pyrv  325 (448)
T PLN02678        253 ELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQFCITSPNGNESWEMHEEMLKNSEDFYQSLGI-PYQV  325 (448)
T ss_pred             hCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEEEEECCCchhHHHHHHHHHHHHHHHHHHcCC-CeEE
Confidence            489999999999999865434       35799887765554442   234456789999999999998 4776

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.12  E-value=3.1e-06  Score=75.52  Aligned_cols=46  Identities=28%  Similarity=0.379  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHHHHHcCC-----cccCCCCCcEEEccCCCeEEecccchhh
Q psy7309           5 WRLLREIIEGLSHIHSQGI-----IHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus         5 ~~i~~qil~gL~~LH~~gi-----iHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      ..++.+++.+|+.||+.++     +|+|+||.||+++ ++.++++|||.|..
T Consensus        86 ~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~~  136 (170)
T cd05151          86 PENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAGM  136 (170)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEecccccC
Confidence            4567899999999999885     9999999999999 67899999998863

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0601|consensus

Probab=98.09  E-value=1.7e-06  Score=89.71  Aligned_cols=50  Identities=40%  Similarity=0.591  Sum_probs=45.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-CCeEEecccchhh
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATN   51 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-~~vKL~DFGla~~   51 (454)
                      ...+++..|++.++.++|++.++|+|+||+||++..+ +..+++|||.++.
T Consensus       366 ~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~  416 (524)
T KOG0601|consen  366 DPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTR  416 (524)
T ss_pred             chhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhccccccccc
Confidence            3678999999999999999999999999999999886 6789999999874

>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]

Probab=98.08  E-value=9.9e-06  Score=85.67  Aligned_cols=142  Identities=11%  Similarity=0.082  Sum_probs=111.5

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccc------cccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATS------ETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~------~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      |.-..+++.+.+-++.....+||.+|.||.+...+....++      ++||.+.. .++.++|||=--.--+..+.....
T Consensus       217 pkG~~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~-~~~~~~lKpmNCpgh~~ifk~~~~  295 (589)
T COG0441         217 PKGATIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTES-DDREYALKPMNCPGHILIFKSGLR  295 (589)
T ss_pred             CCcccHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeecc-CChhheeeeccCHhHHHHHhcCCc
Confidence            45556899999999999999999999999999988875542      67887754 349999999777777666554321


Q ss_pred             ---CCceeeEeecCccccCCCCC--C--ccceEEEEEEEEEcCCCCcc-cHHHHHHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         383 ---IVSMKRYCIDRVFRERRVLG--F--HPRELYECAFDIVTNTPGVL-TMGSLRRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       383 ---~~~~k~~y~g~vfR~~~~~~--g--~~rE~~Q~g~eiig~~~~~~-~d~e~~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                         ..|+|++.+|.|||++..+.  |  |.|+|+|=+.-|+...+-.. --.+++.++.++++.+|+.+|.+++..|
T Consensus       296 SYR~LP~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHifc~~dQi~~E~~~~~~~i~~v~~~fg~~~y~~~ls~r  372 (589)
T COG0441         296 SYRELPLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHIFCTPDQIKDEFKGILELILEVYKDFGFTDYEVKLSTR  372 (589)
T ss_pred             ceeccchhhhhcceeecccCcchhhccccccceeecccceeccHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecC
Confidence               48999999999999987543  5  89999999999998731221 2334677888888999999899998776

>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6

Probab=98.05  E-value=4e-05  Score=76.93  Aligned_cols=104  Identities=18%  Similarity=0.198  Sum_probs=76.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEE----cCCCCeEeeCCCCCHHHHHHHHHcCCCCc
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM----TRGGSIVTLPHDLRIPFARYLAQNGSIVS  385 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~----d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~  385 (454)
                      ..+.+|..|.+.+++.|...||.+|.||.|.....-.  ..+.|.+.    +--|+.+-|+.--=+-.-+.++..    -
T Consensus        20 ~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~--~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g----~   93 (335)
T PF00152_consen   20 SILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEG--GAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAG----L   93 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSS--SSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTT----H
T ss_pred             HHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCc--cccccccccchhhhcccceecCcChHHHHhhhcccc----c
Confidence            3456899999999999999999999999998876432  35678776    246677788877666666666532    3


Q ss_pred             eeeEeecCccccCCC-CCCccceEEEEEEEEEcCC
Q psy7309         386 MKRYCIDRVFRERRV-LGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       386 ~k~~y~g~vfR~~~~-~~g~~rE~~Q~g~eiig~~  419 (454)
                      -|.|+||+|||.+.. ..-|.-||+|+.+|..+.+
T Consensus        94 ~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~  128 (335)
T PF00152_consen   94 ERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFAD  128 (335)
T ss_dssp             SEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSS
T ss_pred             hhhhheecceeccCcccccchhhhhhhhhccccCc
Confidence            499999999999876 5566779999999998876

1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=98.05  E-value=8.7e-06  Score=81.36  Aligned_cols=103  Identities=17%  Similarity=0.282  Sum_probs=78.3

Q ss_pred             ChhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           1 MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         1 ~~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      |+-+.+..+.++.+.+.||..|.+-+|+.++|+|+++++.|.|.|=..-. +.                         ..
T Consensus       116 w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsfq-i~-------------------------~n  169 (637)
T COG4248         116 WDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSFQ-IN-------------------------AN  169 (637)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEccccee-ec-------------------------cC
Confidence            45578899999999999999999999999999999999999998854322 10                         23


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeee-ecCCc
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAE-VYKDR  143 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~e-l~~~~  143 (454)
                      +......+|.+.|.+||...-..-.+.+.....|-|.|              |+++|+ +++|+
T Consensus       170 g~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGL--------------avLiF~lL~ggr  219 (637)
T COG4248         170 GTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGL--------------AVLIFHLLFGGR  219 (637)
T ss_pred             CceEecccCccccCCHHHhccccccccCCCccccchhH--------------HHHHHHHHhcCC
Confidence            45566779999999999865332333333333499999              999999 44534

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	454
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	1e-32
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	4e-32
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	9e-27
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	6e-23
2a19_B	284	Interferon-induced, double-stranded RNA-activated	1e-22
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	3e-19
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-18
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-17
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	5e-17
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	2e-16
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	2e-16
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-16
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-16
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	3e-16
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	4e-16
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	6e-16
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	6e-16
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	7e-16
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	7e-16
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	8e-16
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	9e-16
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-15
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	1e-15
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	2e-15
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	2e-15
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	2e-15
3q4u_A	301	Activin receptor type-1; structural genomics conso	2e-15
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	2e-15
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	3e-15
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	3e-15
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	3e-15
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	5e-15
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	6e-15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	7e-15
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	7e-15
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	8e-15
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	9e-15
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	1e-14
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	1e-14
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	1e-14
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	1e-14
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	1e-14
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-14
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	1e-14
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	1e-14
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	2e-14
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	2e-14
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	2e-14
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	2e-14
3ork_A	311	Serine/threonine protein kinase; structural genomi	2e-14
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	2e-14
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	3e-14
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	3e-14
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	3e-14
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	3e-14
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-14
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-14
3rp9_A	458	Mitogen-activated protein kinase; structural genom	3e-14
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	3e-14
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	3e-14
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	4e-14
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	4e-14
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	4e-14
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	4e-14
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-14
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	5e-14
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	5e-14
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	6e-14
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	6e-14
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	6e-14
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	6e-14
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	6e-14
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	7e-14
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	7e-14
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	8e-14
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	9e-14
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	9e-14
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	9e-14
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	9e-14
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	9e-14
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	1e-13
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	1e-13
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	1e-13
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-13
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	1e-13
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	1e-13
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	2e-13
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	2e-13
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	2e-13
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	2e-13
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-13
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	2e-13
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	2e-13
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	2e-13
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	2e-13
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	2e-13
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	3e-13
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	3e-13
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	4e-13
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	4e-13
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	4e-13
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	4e-13
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	5e-13
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	5e-13
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	5e-13
3o0g_A	292	Cell division protein kinase 5; kinase activator c	6e-13
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	6e-13
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	6e-13
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	7e-13
3niz_A	311	Rhodanese family protein; structural genomics, str	8e-13
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	8e-13
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	8e-13
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	8e-13
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	8e-13
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	8e-13
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	8e-13
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	9e-13
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	9e-13
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	1e-12
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	1e-12
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	1e-12
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	1e-12
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	1e-12
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-12
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	2e-12
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	2e-12
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-12
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	2e-12
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	2e-12
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-12
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	3e-12
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	3e-12
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	3e-12
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	4e-12
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	4e-12
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	4e-12
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	5e-12
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	5e-12
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-12
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	5e-12
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	5e-12
3aln_A	327	Dual specificity mitogen-activated protein kinase;	5e-12
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	5e-12
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	6e-12
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	6e-12
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	7e-12
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	8e-12
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	8e-12
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-11
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	1e-11
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-11
2dyl_A	318	Dual specificity mitogen-activated protein kinase	1e-11
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	1e-11
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-11
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	2e-11
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-11
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	2e-11
3an0_A	340	Dual specificity mitogen-activated protein kinase;	2e-11
3net_A	465	Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas	3e-11
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	3e-11
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	3e-11
3fme_A	290	Dual specificity mitogen-activated protein kinase;	6e-11
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-10
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	7e-10
3uqc_A	286	Probable conserved transmembrane protein; structur	9e-10
3lc0_A	456	Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t	2e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	8e-09
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-08
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	6e-08
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	9e-08
3rac_A	373	Histidine-tRNA ligase; structural genomics, PSI-bi	1e-07
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	1e-07
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	2e-07
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	2e-07
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	3e-07
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-07
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	3e-07
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-07
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	5e-07
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	5e-07
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	6e-07
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	7e-07
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	7e-07
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	8e-07
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	1e-06
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	1e-06
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-06
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	1e-06
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	1e-06
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-06
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-06
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	2e-06
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-06
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-06
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	2e-06
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	2e-06
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-06
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	3e-06
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	3e-06
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	3e-06
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	3e-06
3od1_A	400	ATP phosphoribosyltransferase regulatory subunit;	3e-06
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	4e-06
3pls_A	298	Macrophage-stimulating protein receptor; protein k	4e-06
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	4e-06
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	4e-06
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	5e-06
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	5e-06
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	5e-06
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	5e-06
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	5e-06
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	6e-06
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	7e-06
3qtc_A	290	Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet	7e-06
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	7e-06
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	8e-06
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	8e-06
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	9e-06
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	9e-06
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	9e-06
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	1e-05
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	1e-05
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	1e-05
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	1e-05
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	1e-05
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	2e-05
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-05
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	3e-05
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	3e-05
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	3e-05
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	5e-05
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	5e-05
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	6e-05
1wu7_A	434	Histidyl-tRNA synthetase; ligase, structural genom	7e-05
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	2e-04
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	3e-04
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	3e-04

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score =  124 bits (314), Expect = 1e-32
 Identities = 63/238 (26%), Positives = 89/238 (37%), Gaps = 77/238 (32%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
             WRL R+I+E LS+IHSQGIIHRDLKP+NIFID   +VKIGDFGLA N+ +        
Sbjct: 117 EYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLD----- 171

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                 +  +DS        + T  +GTA+Y A E+        YN           +K 
Sbjct: 172 ------ILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDG--TGHYN-----------EKI 212

Query: 123 --------FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQ 174
                   F+                        E+ +        STG      L+K +
Sbjct: 213 DMYSLGIIFF------------------------EMIY------PFSTGMERVNILKKLR 242

Query: 175 KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                                      +  +I     +  ++HDP+KRP +   L   
Sbjct: 243 SVSIEF-----PPDFDDNK-----MKVEKKII-----RLLIDHDPNKRPGARTLLNSG 285

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score =  124 bits (312), Expect = 4e-32
 Identities = 47/245 (19%), Positives = 79/245 (32%), Gaps = 95/245 (38%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
               +  +I E +  +HS+G++HRDLKP NIF   +D VK+GDFGL T + Q        
Sbjct: 165 VCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQ--- 221

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHGVKA-----------MYN 108
                               +HTGQVGT LY +PE    +++  K            +  
Sbjct: 222 ----------TVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLILFELLY 271

Query: 109 QFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQK 168
            F+ Q                            +R + + ++++                
Sbjct: 272 SFSTQM---------------------------ERVRIITDVRNL--------------- 289

Query: 169 SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN 228
              KF       Y +                       ++      L+  P++RP +   
Sbjct: 290 ---KFPLLFTQKYPQEHM--------------------MVQ---DMLSPSPTERPEATDI 323

Query: 229 LCQPI 233
           +   I
Sbjct: 324 IENAI 328

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score =  108 bits (271), Expect = 9e-27
 Identities = 49/241 (20%), Positives = 74/241 (30%), Gaps = 89/241 (36%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
              +  +I E +  +HS+G++HRDLKP NIF   +D VK+GDFGL T +           
Sbjct: 120 CLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAM--DQDEEEQTV 177

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHGVKA--------MYNQFTP 112
           LT                  HTGQVGT LY +PE    +S+  K         ++    P
Sbjct: 178 LTP-----------MPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLYP 226

Query: 113 QNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQK 172
              FS                  +                ++R                K
Sbjct: 227 ---FST--------------QMERVRTLT-----------DVRN--------------LK 244

Query: 173 FQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           F       Y                         ++      L+  P +RP +   +   
Sbjct: 245 FPPLFTQKYPCEYV--------------------MVQD---MLSPSPMERPEAINIIENA 281

Query: 233 I 233
           +
Sbjct: 282 V 282

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 97.8 bits (244), Expect = 6e-23
 Identities = 48/235 (20%), Positives = 72/235 (30%), Gaps = 89/235 (37%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           + W  LR+ +  L+H+HSQG++H D+KP NIF+      K+GDFGL   +          
Sbjct: 158 QVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVEL---------- 207

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL--DSHGVKAMYNQFTPQNYFSKQQ 120
                               +   Q G   Y APEL   S+G  A               
Sbjct: 208 ----------------GTAGAGEVQEGDPRYMAPELLQGSYGTAA--------------- 236

Query: 121 KAFYVEILRVLW--GYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPP 178
                     ++  G    EV  +                 P  G   Q+  Q +     
Sbjct: 237 ---------DVFSLGLTILEVACNMEL--------------PHGGEGWQQLRQGYLPPEF 273

Query: 179 SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI 233
           +                 + S  +  L         L  DP  R ++E  L  P+
Sbjct: 274 T---------------AGLSSELRSVL------VMMLEPDPKLRATAEALLALPV 307

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 96.2 bits (240), Expect = 1e-22
 Identities = 32/95 (33%), Positives = 44/95 (46%), Gaps = 26/95 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A  L  +I +G+ +IHS+ +I+RDLKP NIF+     VKIGDFGL T++           
Sbjct: 124 ALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSL----------- 172

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                           +D   T   GT  Y +PE 
Sbjct: 173 ---------------KNDGKRTRSKGTLRYMSPEQ 192

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 87.0 bits (216), Expect = 3e-19
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +   LL  I  GL  IH++G  HRDLKP NI +  E    + D G               
Sbjct: 135 QILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQ----------- 183

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    ++ +           Q  T  Y APEL
Sbjct: 184 -----ACIHVEGSRQALTLQDWAAQRCTISYRAPEL 214

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 84.4 bits (209), Expect = 4e-18
 Identities = 25/96 (26%), Positives = 42/96 (43%), Gaps = 25/96 (26%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +      +I   L H+H + I+HRD+K  NIF+  +  V++GDFG            +AR
Sbjct: 126 QILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFG------------IAR 173

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
            L              + + +    +GT  Y +PE+
Sbjct: 174 VLNS------------TVELARA-CIGTPYYLSPEI 196

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 82.4 bits (204), Expect = 1e-17
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 25/94 (26%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           W+   ++   L H+HS+ ++HRD+KP N+FI     VK+GD G            L R  
Sbjct: 139 WKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLG------------LGRFF 186

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           +                 +H+  VGT  Y +PE 
Sbjct: 187 SS------------KTTAAHS-LVGTPYYMSPER 207

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 80.6 bits (199), Expect = 5e-17
 Identities = 40/236 (16%), Positives = 69/236 (29%), Gaps = 62/236 (26%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI----DYEDHVKIGDFGLATNILQKHAGP 59
              +LR+++ G++H+   GI+HR++KP NI      D +   K+ DFG A          
Sbjct: 114 FLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA---------- 163

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQ 119
                                D       GT  Y  P++     +    +   Q  +   
Sbjct: 164 ----------------RELEDDEQFVSLYGTEEYLHPDM----YERAVLRKDHQKKYGA- 202

Query: 120 QKA--------FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQ 171
                      FY        G L    ++  P+  +E+ + I         S VQK+  
Sbjct: 203 -TVDLWSIGVTFYH----AATGSLPFRPFEG-PRRNKEVMYKIITGKPSGAISGVQKAEN 256

Query: 172 KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                               ++   ++      L         L  D  K    +Q
Sbjct: 257 GPIDWS-------GDMPVSCSLSRGLQVLLTPVL------ANILEADQEKCWGFDQ 299

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 25/95 (26%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A    +++I+G+ ++H Q IIHRD+KP N+ +  + H+KI DFG++ N  +     L   
Sbjct: 139 ARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVS-NEFKGSDALL--- 194

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                                   VGT  + APE 
Sbjct: 195 --------------------SN-TVGTPAFMAPES 208

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 78.8 bits (195), Expect = 2e-16
 Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 25/145 (17%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
            A   LR+I+ G  ++H   +IHRDLK  N+F++ +  VKIGDFGLAT +  ++ G   +
Sbjct: 116 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV--EYDGERKK 173

Query: 63  ELTG---YILPPIDSTAFYSHDTSHTGQV-----GTALYA----APELDSHGVKAMY--- 107
            L G   YI P + S         H+ +V     G  +Y      P  ++  +K  Y   
Sbjct: 174 VLCGTPNYIAPEVLS------KKGHSFEVDVWSIGCIMYTLLVGKPPFETSCLKETYLRI 227

Query: 108 --NQFTPQNYFSKQQKAFYVEILRV 130
             N+++   + +    +   ++L+ 
Sbjct: 228 KKNEYSIPKHINPVAASLIQKMLQT 252

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 24/93 (25%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
              + ++E +  IH  GI+H DLKP N  I  +  +K+ DFG+A  +             
Sbjct: 131 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ------------ 177

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    T     D+    QVGT  Y  PE 
Sbjct: 178 -------PDTTSVVKDS----QVGTVNYMPPEA 199

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 77.7 bits (192), Expect = 3e-16
 Identities = 29/101 (28%), Positives = 43/101 (42%), Gaps = 30/101 (29%)

Query: 3   RAWRLLREIIEGLSHIHSQG-----IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHA 57
              R++ ++   L   H +      ++HRDLKP N+F+D + +VK+GDFG          
Sbjct: 112 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFG---------- 161

Query: 58  GPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
             LAR L                  + T  VGT  Y +PE 
Sbjct: 162 --LARILNH------------DTSFAKT-FVGTPYYMSPEQ 187

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 78.6 bits (194), Expect = 3e-16
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 24/93 (25%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
              + ++E +  IH  GI+H DLKP N  I  +  +K+ DFG+A  +             
Sbjct: 112 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ------------ 158

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    T     D+    QVGT  Y  PE 
Sbjct: 159 -------PDTTSVVKDS----QVGTVNYMPPEA 180

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 78.1 bits (193), Expect = 4e-16
 Identities = 24/50 (48%), Positives = 34/50 (68%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            A   LR+I+ G  ++H   +IHRDLK  N+F++ +  VKIGDFGLAT +
Sbjct: 142 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKV 191

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 78.1 bits (192), Expect = 6e-16
 Identities = 18/112 (16%), Positives = 36/112 (32%), Gaps = 29/112 (25%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
             +L  ++I  L+ +H  G++H  L+PV+I +D    V +  F                 
Sbjct: 208 RLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL-------------- 253

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNY 115
                            D +      +  +  PEL++      Y++      
Sbjct: 254 ---------------VRDGARVVSSVSRGFEPPELEARRATISYHRDRRTLM 290

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 38/236 (16%), Positives = 68/236 (28%), Gaps = 55/236 (23%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY 67
           L+ +++ L +IH  G +HR +K  +I I  +  V +       +++        R+   +
Sbjct: 134 LQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISH----GQRQRVVH 189

Query: 68  ILPPIDSTAFYSHDTSHTGQVGTALYAAPE-----LDSHGVKA-----------MYNQFT 111
             P                 V    + +PE     L  +  K+           + N   
Sbjct: 190 DFPKYS--------------VKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHV 235

Query: 112 PQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQ 171
           P   F            ++L    K          L +    I  E    + S    +  
Sbjct: 236 P---FKDMPA------TQML--LEKL---NGTVPCLLD-TSTIPAEELTMSPSRSVANSG 280

Query: 172 KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                  S  R                 +F HF+      + CL  +P  RPS+  
Sbjct: 281 LSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFV------EQCLQRNPDARPSAST 330

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 77.4 bits (191), Expect = 7e-16
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 21/98 (21%)

Query: 1   MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPL 60
           + +  ++ +EI++G+ ++H++GI+H+DLK  N+F D    V I DFGL +          
Sbjct: 129 VNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSI--------- 178

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                               +     Q G   + APE+
Sbjct: 179 -----------SGVLQAGRREDKLRIQNGWLCHLAPEI 205

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 77.5 bits (191), Expect = 7e-16
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 4   AWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLA 61
             ++  +    + H+H Q   IIHRDLK  N+ +  +  +K+ DFG AT I        +
Sbjct: 138 VLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWS 197

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
            +    +   I         T +T    T +Y  PE+
Sbjct: 198 AQRRALVEEEI---------TRNT----TPMYRTPEI 221

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 76.4 bits (189), Expect = 8e-16
 Identities = 22/54 (40%), Positives = 33/54 (61%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH 56
            A   + +II G+ ++HS GI+HRDL   N+ +    ++KI DFGLAT +   H
Sbjct: 113 EARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPH 166

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 78.0 bits (192), Expect = 9e-16
 Identities = 41/237 (17%), Positives = 71/237 (29%), Gaps = 64/237 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI----DYEDHVKIGDFGLATNILQKHAGP 59
              +LR+++ G++H+   GI+HR++KP NI      D +   K+ DFG A          
Sbjct: 114 FLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAA---------- 163

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQ 119
                                D       GT  Y  P++     +    +   Q  +   
Sbjct: 164 ----------------RELEDDEQFVSLYGTEEYLHPDM----YERAVLRKDHQKKYGA- 202

Query: 120 QKA--------FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQ 171
                      FY        G L    ++  P+  +E+ + I         S VQK   
Sbjct: 203 -TVDLWSIGVTFYH----AATGSLPFRPFEG-PRRNKEVMYKIITGKPSGAISGVQK--- 253

Query: 172 KFQKSPPSVYREWRSSF-EWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                  +   +W        ++   ++      L         L  D  K    +Q
Sbjct: 254 -----AENGPIDWSGDMPVSCSLSRGLQVLLTPVL------ANILEADQEKCWGFDQ 299

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 77.5 bits (191), Expect = 1e-15
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 24/93 (25%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
              + ++E +  IH  GI+H DLKP N  I  +  +K+ DFG+A  +             
Sbjct: 159 SYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQ------------ 205

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    T     D+    QVG   Y  PE 
Sbjct: 206 -------PDTTSVVKDS----QVGAVNYMPPEA 227

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 77.0 bits (189), Expect = 1e-15
 Identities = 15/96 (15%), Positives = 27/96 (28%), Gaps = 28/96 (29%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
               L  ++I   +++ S+G++H    P N+FI  +  + +GD                 
Sbjct: 195 ALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALW------------ 242

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                              T          YA  E 
Sbjct: 243 ----------------KVGTRGPASSVPVTYAPREF 262

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 76.4 bits (188), Expect = 2e-15
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 46/231 (19%)

Query: 3   RAWRLLREIIEGLSHIHSQ---------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNIL 53
            + RL   +  GL+++H++          I HRDL   N+ +  +    I DFGL+    
Sbjct: 112 SSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSM--- 168

Query: 54  QKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQ 113
                          L           D +   +VGT  Y APE+       +      +
Sbjct: 169 --------------RLTGNRLVRPGEEDNAAISEVGTIRYMAPEV-------LEGAVNLR 207

Query: 114 NYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKF 173
           +  S  ++     +  + W            +++ E +   + E G        + L   
Sbjct: 208 DXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQMAFQTEVGNHPTFEDMQVLVSR 267

Query: 174 QKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS 224
           +K  P     W+ +              +     I     C + D   R +
Sbjct: 268 EKQRPKFPEAWKEN----------SLAVRSLKETIED---CWDQDAEARLT 305

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 75.4 bits (186), Expect = 2e-15
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 26/94 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
             +++R ++E +  +H   I+HRDLKP NI +D + ++K+ DFG +              
Sbjct: 126 TRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSC------------- 172

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                    GT  Y APE
Sbjct: 173 -------------QLDPGEKLREVCGTPSYLAPE 193

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 75.8 bits (187), Expect = 2e-15
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 23/95 (24%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A     ++I+GL ++HSQGI+H+D+KP N+ +     +KI   G+A  +    A      
Sbjct: 111 AHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAAD----- 165

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            DT  T Q G+  +  PE+
Sbjct: 166 -----------------DTCRTSQ-GSPAFQPPEI 182

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 45/239 (18%), Positives = 77/239 (32%), Gaps = 66/239 (27%)

Query: 3   RAWRLLREIIEGLSHIHSQ--------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
              R++  I  GL+H+H +         I HRDLK  NI +       I D GLA     
Sbjct: 106 SCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAV---- 161

Query: 55  KHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQN 114
                            + S +    D  +  +VGT  Y APE+    +     Q    +
Sbjct: 162 -----------------MHSQSTNQLDVGNNPRVGTKRYMAPEVLDETI-----QVDCFD 199

Query: 115 YFSKQQKA----FYVEILRVLWGYLKAEVY--KDRPKTLEELKHNIRRENGPSTGSNVQK 168
            +   ++     F +    VLW     EV         +E+ K                +
Sbjct: 200 SY---KRVDIWAFGL----VLW-----EVARRMVSNGIVEDYKPPFYDVVPNDPSFEDMR 247

Query: 169 SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
            +    +  P++   W S    +++   +K               C   +PS R ++ +
Sbjct: 248 KVVCVDQQRPNIPNRWFSDPTLTSLAKLMKE--------------CWYQNPSARLTALR 292

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 75.1 bits (185), Expect = 3e-15
 Identities = 28/124 (22%), Positives = 40/124 (32%), Gaps = 52/124 (41%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-------------------VKIGD 45
             LL ++  GL +IHS  ++H D+KP NIFI                         KIGD
Sbjct: 118 KDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGD 177

Query: 46  FGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL----DSH 101
            G  T                               +S   + G + + A E+     +H
Sbjct: 178 LGHVT-----------------------------RISSPQVEEGDSRFLANEVLQENYTH 208

Query: 102 GVKA 105
             KA
Sbjct: 209 LPKA 212

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 75.0 bits (185), Expect = 3e-15
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 23/104 (22%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
            + R+   G+ ++H++ IIHRDLK  NIF+  ++ VKIGDFGLAT               
Sbjct: 124 DIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLAT--------------- 168

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQ 109
                     + +S         G+ L+ APE+        Y+ 
Sbjct: 169 --------EKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSF 204

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 76.2 bits (187), Expect = 3e-15
 Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 24/96 (25%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
              +L  ++I  L+ +H  G++H  L+PV+I +D    V +  F           G    
Sbjct: 212 ARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL-----VRDGA--- 263

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                           S  +            A  +
Sbjct: 264 ----------------SAVSPIGRGFAPPETTAERM 283

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 74.6 bits (184), Expect = 5e-15
 Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 26/96 (27%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           RA  ++R+I   L   H+ G  HRD+KP NI +  +D   + DFG+A             
Sbjct: 135 RAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIA------------S 182

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQV-GTALYAAPE 97
             T       D         +  G   GT  Y APE
Sbjct: 183 ATT-------DEK------LTQLGNTVGTLYYMAPE 205

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A* Length = 410

 Score = 75.5 bits (186), Expect = 6e-15
 Identities = 30/100 (30%), Positives = 41/100 (41%), Gaps = 25/100 (25%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           E++  L  IHS G IHRD+KP N+ +D   H+K+ DFG    + ++              
Sbjct: 176 EVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEG------------- 222

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPE-LDSHGVKAMYN 108
                          T  VGT  Y +PE L S G    Y 
Sbjct: 223 ----------MVRCDTA-VGTPDYISPEVLKSQGGDGYYG 251

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 76.0 bits (187), Expect = 7e-15
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 30/100 (30%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
            A   L EI+  LS++HS G+++ DLKP NI +  E+ +K+ D G  + I          
Sbjct: 183 EAIAYLLEILPALSYLHSIGLVYNDLKPENIMLT-EEQLKLIDLGAVSRINS-------- 233

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHG 102
              GY+                    GT  + APE+   G
Sbjct: 234 --FGYL-------------------YGTPGFQAPEIVRTG 252

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp} Length = 294

 Score = 73.8 bits (182), Expect = 7e-15
 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 26/96 (27%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
            A     +I++G+ H H   I+HRD+KP NI ID    +KI DFG+A             
Sbjct: 112 TAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAK------------ 159

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQV-GTALYAAPE 97
                        A      + T  V GT  Y +PE
Sbjct: 160 -------------ALSETSLTQTNHVLGTVQYFSPE 182

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 74.4 bits (183), Expect = 8e-15
 Identities = 44/239 (18%), Positives = 71/239 (29%), Gaps = 66/239 (27%)

Query: 3   RAWRLLREIIEGLSHIHSQ--------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
              +L    + GL H+H++         I HRDLK  NI +       I D GLA   + 
Sbjct: 135 SMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFIS 194

Query: 55  KHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQN 114
                                     D     +VGT  Y  PE        + ++   +N
Sbjct: 195 DTN---------------------EVDIPPNTRVGTKRYMPPE--------VLDESLNRN 225

Query: 115 YFSKQQKA----FYVEILRVLWGYLKAEVY--KDRPKTLEELKHNIRRENGPSTGSNVQK 168
           +F     A    F +    +LW     EV         +EE +                +
Sbjct: 226 HFQSYIMADMYSFGL----ILW-----EVARRCVSGGIVEEYQLPYHDLVPSDPSYEDMR 276

Query: 169 SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
            +   +K  PS    W S      +   +                C  H+P+ R ++ +
Sbjct: 277 EIVCIKKLRPSFPNRWSSDECLRQMGKLMTE--------------CWAHNPASRLTALR 321

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 73.8 bits (182), Expect = 9e-15
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 28/96 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH-VKIGDFGLATNILQKHAGPLA 61
               + ++ E L  +HS  I H D++P NI +       +KI +FG A            
Sbjct: 104 IVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQAR----------- 152

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                +         Y APE
Sbjct: 153 ---------------QLKPGDNFRLLFTAPEYYAPE 173

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 74.8 bits (184), Expect = 1e-14
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 27/100 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-----VKIGDFGLATNILQKHAG 58
              LL++   GL+H+HS  I+HRDLKP NI I   +        I DFGL   +      
Sbjct: 120 PITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAV---- 175

Query: 59  PLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            +F    +  +G  GT  + APE+
Sbjct: 176 --------------GRHSF----SRRSGVPGTEGWIAPEM 197

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 42/240 (17%), Positives = 68/240 (28%), Gaps = 68/240 (28%)

Query: 3   RAWRLLREIIEGLSHIHSQ--------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
              +L      GL+H+H +         I HRDLK  NI +       I D GLA     
Sbjct: 140 GMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAV---- 195

Query: 55  KHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE-LDSHGVKAMYNQFTPQ 113
                               T     D +   +VGT  Y APE LD              
Sbjct: 196 -------------RHDSATDTI----DIAPNHRVGTKRYMAPEVLDDSI------NMKHF 232

Query: 114 NYFSKQQKA----FYVEILRVLWGYLKAEVY--KDRPKTLEELKHNIRRENGPSTGSNVQ 167
             F   ++A      +    V W     E+          E+ +                
Sbjct: 233 ESF---KRADIYAMGL----VFW-----EIARRCSIGGIHEDYQLPYYDLVPSDPSVEEM 280

Query: 168 KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
           + +   QK  P++   W+S      +   ++               C   + + R ++ +
Sbjct: 281 RKVVCEQKLRPNIPNRWQSCEALRVMAKIMRE--------------CWYANGAARLTALR 326

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 74.4 bits (183), Expect = 1e-14
 Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 26/94 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
              ++R ++E +S +H+  I+HRDLKP NI +D    +++ DFG +              
Sbjct: 202 TRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSC------------- 248

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                    GT  Y APE
Sbjct: 249 -------------HLEPGEKLRELCGTPGYLAPE 269

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 27/100 (27%)

Query: 1   MGRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAG 58
             R   +  ++ +G++++H++   I+HR+LK  N+ +D +  VK+ DFGL+         
Sbjct: 136 ERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLS--------- 186

Query: 59  PLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
              R                S   S     GT  + APE+
Sbjct: 187 ---RLKA-------------STFLSSKSAAGTPEWMAPEV 210

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 73.4 bits (181), Expect = 1e-14
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 23/89 (25%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI+  L ++H +GIIHRDLKP NI ++ + H++I DFG A     K   P +++      
Sbjct: 138 EIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTA-----KVLSPESKQARANSF 192

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                             VGTA Y +PEL
Sbjct: 193 ------------------VGTAQYVSPEL 203

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 24/98 (24%), Positives = 40/98 (40%), Gaps = 30/98 (30%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDH-VKIGDFGLATNILQKHAGP 59
           A + L++I++G+ ++HS+ I H DLKP NI +   +  +  +K+ DFG+A          
Sbjct: 110 ATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAH--------- 160

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                        GT  + APE
Sbjct: 161 -----------------KIEAGNEFKNIFGTPEFVAPE 181

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens} Length = 384

 Score = 74.3 bits (183), Expect = 1e-14
 Identities = 30/99 (30%), Positives = 42/99 (42%), Gaps = 26/99 (26%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           E++  L ++ +Q IIHRD+KP NI +D   HV I DF +A  +                 
Sbjct: 123 ELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAML----------------- 165

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYN 108
                      +T  T   GT  Y APE+ S    A Y+
Sbjct: 166 ---------PRETQITTMAGTKPYMAPEMFSSRKGAGYS 195

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 73.0 bits (180), Expect = 1e-14
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 23/95 (24%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A R   +++ G+ ++H  GI HRD+KP N+ +D  D++KI DFGLAT     +   L   
Sbjct: 107 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERL--- 163

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            +       GT  Y APEL
Sbjct: 164 ----------------LNKM----CGTLPYVAPEL 178

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 74.1 bits (182), Expect = 2e-14
 Identities = 31/108 (28%), Positives = 41/108 (37%), Gaps = 34/108 (31%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-------------VKIGDFGLAT 50
              LLR+I  G++H+HS  IIHRDLKP NI +                  + I DFGL  
Sbjct: 117 PISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCK 176

Query: 51  NILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
            +                          S  T+     GT+ + APEL
Sbjct: 177 KLDSGQ---------------------SSFRTNLNNPSGTSGWRAPEL 203

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 73.3 bits (180), Expect = 2e-14
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 23/97 (23%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI--DYEDHVKIGDFGLATNILQKHAGPLA 61
              ++R+I   L ++H+QGI HRD+KP N     +    +K+ DFGL+    + + G   
Sbjct: 170 ISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNG--- 226

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                                  T + GT  + APE+
Sbjct: 227 ------------------EYYGMTTKAGTPYFVAPEV 245

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 30/98 (30%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH---VKIGDFGLATNILQKHAGP 59
           A   +++I++G++++H++ I H DLKP NI  +D       +K+ DFGLA          
Sbjct: 117 ATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH--------- 167

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                        GT  + APE
Sbjct: 168 -----------------EIEDGVEFKNIFGTPEFVAPE 188

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 29/108 (26%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPL 60
                 +++  + ++H  GIIHRDLKP N+ +  ++    +KI DFG +           
Sbjct: 116 CKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK---------- 165

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYN 108
                                +      GT  Y APE+      A YN
Sbjct: 166 ----------------ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYN 197

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A* Length = 311

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 24/96 (25%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           RA  ++ +  + L+  H  GIIHRD+KP NI I   + VK+ DFG+A     +       
Sbjct: 117 RAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIA-----RAIADSGN 171

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQV-GTALYAAPE 97
            +T                   T  V GTA Y +PE
Sbjct: 172 SVT------------------QTAAVIGTAQYLSPE 189

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 73.6 bits (181), Expect = 2e-14
 Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 29/108 (26%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPL 60
                 +++  + ++H  GIIHRDLKP N+ +  ++    +KI DFG +           
Sbjct: 241 CKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSK---------- 290

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYN 108
                                +      GT  Y APE+      A YN
Sbjct: 291 ----------------ILGETSLMRTLCGTPTYLAPEVLVSVGTAGYN 322

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens} Length = 412

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 25/104 (24%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI+  +  +H  G +HRD+KP NI +D   H+++ DFG    +                 
Sbjct: 170 EIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADG------------- 216

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPE-LDSHGVKAMYNQFTP 112
                        S    VGT  Y +PE L + G       + P
Sbjct: 217 ----------TVRSLV-AVGTPDYLSPEILQAVGGGPGTGSYGP 249

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A* Length = 437

 Score = 73.6 bits (181), Expect = 3e-14
 Identities = 24/102 (23%), Positives = 38/102 (37%), Gaps = 26/102 (25%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           E++  +  +H    +HRD+KP NI +D   H+++ DFG    +++               
Sbjct: 183 EMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDG------------- 229

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPE--LDSHGVKAMYNQ 109
                        S    VGT  Y +PE      G K  Y  
Sbjct: 230 ----------TVQSSV-AVGTPDYISPEILQAMEGGKGRYGP 260

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 21/97 (21%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPL 60
           A  +++++   L  +H++GI HRDLKP NI  ++ +    VKI DF L + I        
Sbjct: 113 ASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGI---KLNGD 169

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
              ++   L                   G+A Y APE
Sbjct: 170 CSPISTPEL---------------LTPCGSAEYMAPE 191

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 30/98 (30%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYED---HVKIGDFGLATNILQKHAGP 59
           A   L++I+ G+ ++HS  I H DLKP NI  +D       +KI DFGLA          
Sbjct: 116 ATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAH--------- 166

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                        GT  + APE
Sbjct: 167 -----------------KIDFGNEFKNIFGTPEFVAPE 187

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 29/96 (30%), Positives = 37/96 (38%), Gaps = 28/96 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH-VKIGDFGLATNILQKHAGPLA 61
               +R+  EGL H+H   I+H D+KP NI     +   VKI DFGLAT           
Sbjct: 151 VINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLAT----------- 199

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                            + D        TA +AAPE
Sbjct: 200 ---------------KLNPDEIVKVTTATAEFAAPE 220

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 72.3 bits (178), Expect = 3e-14
 Identities = 30/95 (31%), Positives = 43/95 (45%), Gaps = 23/95 (24%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A R   +++ G+ ++H  GI HRD+KP N+ +D  D++KI DFGLAT     +   L   
Sbjct: 107 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERL--- 163

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            +       GT  Y APEL
Sbjct: 164 ----------------LNKM----CGTLPYVAPEL 178

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 73.3 bits (180), Expect = 3e-14
 Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 2/90 (2%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA--TNILQKHAGPLARELTGYI 68
           ++ G+ ++HS GI+HRDLKP N  ++ +  VK+ DFGLA   +  +     L        
Sbjct: 165 LLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDD 224

Query: 69  LPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           +  +      +     TG V T  Y APEL
Sbjct: 225 MNLVTFPHTKNLKRQLTGHVVTRWYRAPEL 254

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 71.9 bits (177), Expect = 3e-14
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLAT 50
           R    + E+   LS+ HS+ +IHRD+KP N+ +     +KI DFG + 
Sbjct: 110 RTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSV 157

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 71.8 bits (177), Expect = 3e-14
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYED--HVKIGDFGLATNILQKHAGPL 60
           A   +++I+E +++ HS GI+HR+LKP N+          VK+ DFGLA           
Sbjct: 107 ASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI---------- 156

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                             +   +  G  GT  Y +PE
Sbjct: 157 ----------------EVNDSEAWHGFAGTPGYLSPE 177

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 17/47 (36%), Positives = 30/47 (63%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           R+   + E+ + L + H + +IHRD+KP N+ + Y+  +KI DFG +
Sbjct: 115 RSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWS 161

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH--VKIGDFGLATNILQKHAGPL 60
              L+++++  L++ HSQ ++H+DLKP NI F D   H  +KI DFGLA           
Sbjct: 126 VAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAE---------- 175

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                            +  D   T   GTALY APE
Sbjct: 176 ----------------LFKSDEHSTNAAGTALYMAPE 196

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 73.3 bits (180), Expect = 4e-14
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 26/89 (29%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EI  GL  +H + I++RDLKP NI +D   H++I D GLA ++ +               
Sbjct: 294 EICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEG-------------- 339

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                       T    +VGT  Y APE+
Sbjct: 340 -----------QTIKG-RVGTVGYMAPEV 356

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 71.9 bits (177), Expect = 4e-14
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 27/93 (29%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-VKIGDFGLATNILQKHAGPLARELT 65
            + EI++ L + HS GI+HRD+KP N+ ID+E   +++ D+GLA                
Sbjct: 135 YMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLA------------E--- 179

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                      FY     +  +V +  +  PEL
Sbjct: 180 -----------FYHPGQEYNVRVASRYFKGPEL 201

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 72.4 bits (178), Expect = 5e-14
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 30/98 (30%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH---VKIGDFGLATNILQKHAGP 59
           A   +++I++G++++H++ I H DLKP NI  +D       +K+ DFGLA          
Sbjct: 117 ATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAH--------- 167

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                        GT  + APE
Sbjct: 168 -----------------EIEDGVEFKNIFGTPEFVAPE 188

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 29/98 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH---VKIGDFGLATNILQKHAGP 59
           A  +L  I + + ++H+QG++HRDLKP NI ++D   +   ++I DFG A   L+   G 
Sbjct: 118 ASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAK-QLRAENGL 176

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
           L                             TA + APE
Sbjct: 177 L------------------------MTPCYTANFVAPE 190

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 72.8 bits (179), Expect = 5e-14
 Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 99/242 (40%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPL 60
           A R+++++  G++++H   I+HRDLKP NI ++ ++    +KI DFGL+T          
Sbjct: 123 AARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLST---------- 172

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL--DSHGVKA--------MYNQF 110
                            +  +T    ++GTA Y APE+   ++  K         +Y   
Sbjct: 173 ----------------CFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVILY--- 213

Query: 111 TPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSL 170
                           IL  L G                          P  G N    L
Sbjct: 214 ----------------IL--LSGTP------------------------PFYGKNEYDIL 231

Query: 171 QKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC 230
           ++ +    +         +W T+ ++ K        LI +    L   PS R ++ Q L 
Sbjct: 232 KRVETGKYAFDLP-----QWRTISDDAKD-------LIRK---MLTFHPSLRITATQCLE 276

Query: 231 QP 232
            P
Sbjct: 277 HP 278

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 72.9 bits (179), Expect = 6e-14
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 28/96 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI--DYEDHVKIGDFGLATNILQKHAGPLA 61
           A   +R++ +GL H+H    +H DLKP NI       + +K+ DFGL             
Sbjct: 257 AVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTA----------- 305

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                S     GTA +AAPE
Sbjct: 306 ---------------HLDPKQSVKVTTGTAEFAAPE 326

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 72.0 bits (177), Expect = 6e-14
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 28/96 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH-VKIGDFGLATNILQKHAGPLA 61
               +++I EG+ H+H   I+H DLKP NI  ++ +   +KI DFGLA            
Sbjct: 189 TILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLAR----------- 237

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                           Y          GT  + APE
Sbjct: 238 ---------------RYKPREKLKVNFGTPEFLAPE 258

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 71.4 bits (176), Expect = 6e-14
 Identities = 23/40 (57%), Positives = 30/40 (75%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           E+   L H+HS GII+RDLKP NI +D E H+K+ DFGL+
Sbjct: 134 ELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLS 173

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 70.7 bits (174), Expect = 6e-14
 Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPL 60
           A R++++++  +++ H   + HRDLKP N     +     +K+ DFGLA           
Sbjct: 108 AARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAA---------- 157

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                            +        +VGT  Y +P+
Sbjct: 158 ----------------RFKPGKMMRTKVGTPYYVSPQ 178

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 72.4 bits (178), Expect = 6e-14
 Identities = 49/245 (20%), Positives = 86/245 (35%), Gaps = 105/245 (42%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPL 60
           A  ++++I+ G+ ++H   I+HRD+KP NI ++ ++   ++KI DFGL++          
Sbjct: 148 AANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSS---------- 197

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL--DSHGVKA--------MYNQF 110
                           F+S D     ++GTA Y APE+    +  K         MY   
Sbjct: 198 ----------------FFSKDYKLRDRLGTAYYIAPEVLKKKYNEKCDVWSCGVIMY--- 238

Query: 111 TPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP---KTLEELKHNIRRENGPSTGSNVQ 167
                           IL  L GY         P   +  +++   + +           
Sbjct: 239 ----------------IL--LCGY--------PPFGGQNDQDIIKKVEKGKY-------- 264

Query: 168 KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                F  +             W  + +  K      LI     K  L +D +KR ++E+
Sbjct: 265 ----YFDFND------------WKNISDEAKE-----LI-----KLMLTYDYNKRCTAEE 298

Query: 228 NLCQP 232
            L   
Sbjct: 299 ALNSR 303

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 71.7 bits (176), Expect = 7e-14
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 28/97 (28%)

Query: 3   RAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLA 61
               +++ ++   S+IH++  I HRD+KP NI +D    VK+ DFG +            
Sbjct: 152 VIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGES------------ 199

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                          +           GT  +  PE 
Sbjct: 200 --------------EYMVDKKIKG-SRGTYEFMPPEF 221

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 70.7 bits (174), Expect = 7e-14
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPL 60
           A R+++++  G++++H   I+HRDLKP NI ++ ++    +KI DFGL+T          
Sbjct: 123 AARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLST---------- 172

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                            +  +T    ++GTA Y APE
Sbjct: 173 ----------------CFQQNTKMKDRIGTAYYIAPE 193

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Length = 327

 Score = 71.4 bits (176), Expect = 8e-14
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI   L H+H +GII+RDLKP NI ++++ HVK+ DFGL 
Sbjct: 129 EISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLC 168

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 71.7 bits (176), Expect = 9e-14
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 3/88 (3%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
           ++ G + IH  GIIHRDLKP N  ++ +  VK+ DFGLA  I  +    +  +L     P
Sbjct: 138 LLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEP 197

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPEL 98
              +       TSH   V T  Y APEL
Sbjct: 198 GPHNKNLKKQLTSH---VVTRWYRAPEL 222

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH--VKIGDFGLATNILQKHAGPL 60
           A   +++I+E +++ HS GI+HR+LKP N+          VK+ DFGLA           
Sbjct: 130 ASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAI---------- 179

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                             +   +  G  GT  Y +PE
Sbjct: 180 ----------------EVNDSEAWHGFAGTPGYLSPE 200

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7 Length = 355

 Score = 71.2 bits (175), Expect = 9e-14
 Identities = 20/40 (50%), Positives = 27/40 (67%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI+  L H+H  GII+RD+K  NI +D   HV + DFGL+
Sbjct: 167 EIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLS 206

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 71.6 bits (176), Expect = 9e-14
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
           +I+ + ++HS G++HRD+KP NI ++ E HVK+ DFGL+ + +          L+     
Sbjct: 118 LIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLS----I 173

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPEL 98
             ++  F       T  V T  Y APE+
Sbjct: 174 NENTENFDDDQPILTDYVATRWYRAPEI 201

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 72.0 bits (177), Expect = 9e-14
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPL 60
           A R++R+++ G++++H   I+HRDLKP N+ ++ +    +++I DFGL+T          
Sbjct: 128 AARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLST---------- 177

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                            +        ++GTA Y APE
Sbjct: 178 ----------------HFEASKKMKDKIGTAYYIAPE 198

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 71.6 bits (176), Expect = 1e-13
 Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 28/97 (28%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH--VKIGDFGLATNILQKHAGPL 60
           A   +++I+E + H H  G++HR+LKP N+          VK+ DFGL            
Sbjct: 112 ASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGL------------ 159

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                        +        +  G  GT  Y +PE
Sbjct: 160 -------------AIEVEGEQQAWFGFAGTPGYLSPE 183

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 70.7 bits (174), Expect = 1e-13
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPL 60
             RL+++I+EG+ ++H   I+H DLKP NI +        +KI DFG++           
Sbjct: 133 VIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSR---------- 182

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                              H       +GT  Y APE
Sbjct: 183 ----------------KIGHACELREIMGTPEYLAPE 203

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH--VKIGDFGLATNILQKHAGPL 60
           A   +++I+E ++++H  GI+HRDLKP N+ +        +KI DFGL+           
Sbjct: 150 AADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSK---------- 199

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                              H        GT  Y APE
Sbjct: 200 ----------------IVEHQVLMKTVCGTPGYCAPE 220

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 28/96 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-VKIGDFGLATNILQKHAGPLAR 62
           +     +++  + H HS+G++HRD+K  NI ID      K+ DFG    +L     P   
Sbjct: 141 SRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSG-ALLHD--EPY-- 195

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                                     GT +Y+ PE 
Sbjct: 196 ------------------TDF----DGTRVYSPPEW 209

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7 Length = 318

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           E+   L ++HS+ II+RDLKP NI +D   H+KI DFG A
Sbjct: 114 EVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFA 153

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A* Length = 373

 Score = 70.8 bits (174), Expect = 1e-13
 Identities = 19/40 (47%), Positives = 27/40 (67%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI   L ++HS  I++RDLKP NI +D + H+ + DFGL 
Sbjct: 147 EIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLC 186

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 71.3 bits (175), Expect = 2e-13
 Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPL 60
           A  ++++++ G++++H   I+HRDLKP N+ ++ ++    +KI DFGL+           
Sbjct: 138 AAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSA---------- 187

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                            + +      ++GTA Y APE
Sbjct: 188 ----------------VFENQKKMKERLGTAYYIAPE 208

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 26/95 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A    R+I+  + + H + I+HRDLK  N+ +D + ++KI DFG +        G L   
Sbjct: 116 ARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSN--EFTVGGKL--- 170

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            D       G   YAAPEL
Sbjct: 171 -----------------DAF----CGAPPYAAPEL 184

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 23/95 (24%), Positives = 37/95 (38%), Gaps = 26/95 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A  + R+++  + ++  + IIHRD+K  NI I  +  +K+ DFG A     +        
Sbjct: 132 ASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAA--YLERGKLF--- 186

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                             T      GT  Y APE+
Sbjct: 187 -----------------YTF----CGTIEYCAPEV 200

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 17/40 (42%), Positives = 29/40 (72%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI+  L ++HS+ +++RD+K  N+ +D + H+KI DFGL 
Sbjct: 113 EIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLC 152

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 26/100 (26%), Positives = 41/100 (41%), Gaps = 32/100 (32%)

Query: 3   RAWRLLREIIEGLSHIHS---QGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAG 58
            A     +  +G++++HS   + +IHRDLKP N+ +      +KI DFG A +I      
Sbjct: 103 HAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDI------ 156

Query: 59  PLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                                  T  T   G+A + APE+
Sbjct: 157 ----------------------QTHMTNNKGSAAWMAPEV 174

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 13/93 (13%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
              ++I  G++++HS  IIHRDL   N  +    +V + DFG            LAR + 
Sbjct: 112 SFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFG------------LARLMV 159

Query: 66  GYILPPIDSTAFYSHD-TSHTGQVGTALYAAPE 97
                P    +    D       VG   + APE
Sbjct: 160 DEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPE 192

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 69.5 bits (171), Expect = 2e-13
 Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 25/93 (26%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
            +  + ++ ++  H    IHRD+KP NI I     +K+ DFG             AR LT
Sbjct: 106 SITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFG------------FARLLT 153

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           G    P D    Y        +V T  Y +PEL
Sbjct: 154 G----PSDY---YDD------EVATRWYRSPEL 173

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 69.7 bits (171), Expect = 2e-13
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 28/96 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLAR 62
           A     +++E + H H+ G++HRD+K  NI ID     +K+ DFG    +L+        
Sbjct: 151 ARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSG-ALLKD--TVY-- 205

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                                     GT +Y+ PE 
Sbjct: 206 ------------------TDF----DGTRVYSPPEW 219

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 26/97 (26%), Positives = 38/97 (39%), Gaps = 28/97 (28%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH--VKIGDFGLATNILQKHAGPL 60
           A   +R+I+E L + H   IIHRD+KP  +     E+   VK+G FG+            
Sbjct: 132 ASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGV------------ 179

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                        +           G+VGT  + APE
Sbjct: 180 -------------AIQLGESGLVAGGRVGTPHFMAPE 203

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 71.0 bits (174), Expect = 2e-13
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I+ GL H+H + II+RDLKP N+ +D + +V+I D GLA
Sbjct: 297 QIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLA 336

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI  GL  + S+GII+RDLK  N+ +D E H+KI DFG+ 
Sbjct: 129 EIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMC 168

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 71.1 bits (174), Expect = 3e-13
 Identities = 31/89 (34%), Positives = 41/89 (46%), Gaps = 27/89 (30%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
           EII GL H+H++ +++RDLKP NI +D   HV+I D GLA +                  
Sbjct: 300 EIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDF----------------- 342

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    S    H   VGT  Y APE+
Sbjct: 343 ---------SKKKPHA-SVGTHGYMAPEV 361

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 69.6 bits (171), Expect = 4e-13
 Identities = 18/40 (45%), Positives = 29/40 (72%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI   L+++H +GII+RDLK  N+ +D E H+K+ D+G+ 
Sbjct: 118 EISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 157

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           +I+    ++HS  +I+RDLKP N+ ID + ++++ DFG A
Sbjct: 149 QIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFA 188

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 69.2 bits (170), Expect = 4e-13
 Identities = 20/40 (50%), Positives = 28/40 (70%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EII  L  +H +GII+RDLK  N+ +D+E H K+ DFG+ 
Sbjct: 132 EIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMC 171

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 68.8 bits (169), Expect = 4e-13
 Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 23/89 (25%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYIL 69
           ++ GL +IHS  ++HRDLKP N+FI+ ED  +KIGDFGLA  +   +       L+    
Sbjct: 129 LLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHY--SHKGHLSEG-- 184

Query: 70  PPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                             + T  Y +P L
Sbjct: 185 ------------------LVTKWYRSPRL 195

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 68.9 bits (169), Expect = 5e-13
 Identities = 30/97 (30%), Positives = 43/97 (44%), Gaps = 28/97 (28%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH--VKIGDFGLATNILQKHAGPL 60
           A  ++R+++  +SH+H  G++HRDLKP N+ F D  D+  +KI DFG A  +      PL
Sbjct: 108 ASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFAR-LKPPDNQPL 166

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                        T  YAAPE
Sbjct: 167 ------------------------KTPCFTLHYAAPE 179

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 32/93 (34%), Positives = 40/93 (43%), Gaps = 25/93 (26%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELT 65
           + L +II G+   HS  IIHRD+KP NI +     VK+ DFG             AR L 
Sbjct: 128 KYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFG------------FARTLA 175

Query: 66  GYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                P +    Y        +V T  Y APEL
Sbjct: 176 A----PGEV---YDD------EVATRWYRAPEL 195

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 69.3 bits (170), Expect = 5e-13
 Identities = 18/40 (45%), Positives = 29/40 (72%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI   L+++H +GII+RDLK  N+ +D E H+K+ D+G+ 
Sbjct: 161 EISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMC 200

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 68.3 bits (168), Expect = 6e-13
 Identities = 18/43 (41%), Positives = 30/43 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L ++++GL   HS+ ++HRDLKP N+ I+    +K+ +FGLA
Sbjct: 106 FLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLA 148

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 68.1 bits (167), Expect = 6e-13
 Identities = 28/58 (48%), Positives = 35/58 (60%), Gaps = 5/58 (8%)

Query: 3   RAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHA 57
           R+W   R+I++GL  +H++   IIHRDLK  NIFI      VKIGD GLAT      A
Sbjct: 132 RSW--CRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFA 187

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 68.8 bits (169), Expect = 6e-13
 Identities = 22/40 (55%), Positives = 30/40 (75%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EII GL  +HS+GI++RDLK  NI +D + H+KI DFG+ 
Sbjct: 126 EIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMC 165

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 68.4 bits (168), Expect = 7e-13
 Identities = 21/43 (48%), Positives = 29/43 (67%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L+R+ + GL  +H+  I+HRDLKP NI +     VK+ DFGLA
Sbjct: 125 LMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLA 167

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 68.0 bits (167), Expect = 8e-13
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L +++ G++H H   I+HRDLKP N+ I+ +  +K+ DFGLA
Sbjct: 124 YLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLA 166

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 68.4 bits (168), Expect = 8e-13
 Identities = 26/92 (28%), Positives = 42/92 (45%), Gaps = 21/92 (22%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           +++ ++ GL +IH   I+HRD+K  N+ I  +  +K+ DFG            LAR    
Sbjct: 129 VMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFG------------LARA--- 173

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           + L        Y++      +V T  Y  PEL
Sbjct: 174 FSLAKNSQPNRYTN------RVVTLWYRPPEL 199

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 68.5 bits (168), Expect = 8e-13
 Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 26/95 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
             R  ++II  + + H   I+HRDLKP N+ +D   +VKI DFGL+   +      L   
Sbjct: 110 GRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSN--IMTDGNFL--- 164

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                             TS     G+  YAAPE+
Sbjct: 165 -----------------KTS----CGSPNYAAPEV 178

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 67.5 bits (166), Expect = 8e-13
 Identities = 19/43 (44%), Positives = 31/43 (72%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L +++ G+++ H + ++HRDLKP N+ I+ E  +KI DFGLA
Sbjct: 105 FLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLA 147

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ... Length = 299

 Score = 67.9 bits (167), Expect = 8e-13
 Identities = 20/43 (46%), Positives = 31/43 (72%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L ++++GL+  HS  ++HRDLKP N+ I+ E  +K+ DFGLA
Sbjct: 108 YLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA 150

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 67.6 bits (166), Expect = 8e-13
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 26/95 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A RL ++I+  + + H   ++HRDLKP N+ +D   + KI DFGL+   +      L   
Sbjct: 113 ARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSN--MMSDGEFL--- 167

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                             TS     G+  YAAPE+
Sbjct: 168 -----------------RTS----CGSPNYAAPEV 181

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 67.7 bits (166), Expect = 9e-13
 Identities = 20/45 (44%), Positives = 31/45 (68%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           LRE++EGL ++H  G IHRD+K  NI +  +  V+I DFG++  +
Sbjct: 127 LREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFL 171

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 69.3 bits (169), Expect = 9e-13
 Identities = 32/96 (33%), Positives = 37/96 (38%), Gaps = 29/96 (30%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPLAR 62
            LL +I   L ++H   IIHRDLKP NI +         KI D G A   L +  G L  
Sbjct: 125 TLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYA-KELDQ--GELCT 181

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           E                        VGT  Y APEL
Sbjct: 182 EF-----------------------VGTLQYLAPEL 194

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 30/97 (30%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPL 60
           A  ++R+I   +  +HS  I HRD+KP N+    ++    +K+ DFG A    +     L
Sbjct: 130 AAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAK---ETTQNAL 186

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                                        T  Y APE
Sbjct: 187 ------------------------QTPCYTPYYVAPE 199

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 18/43 (41%), Positives = 29/43 (67%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           ++ +++ GL  +HS  ++HRDLKP NI +     +K+ DFGLA
Sbjct: 125 MMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLA 167

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 19/43 (44%), Positives = 29/43 (67%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
              ++++GL+  H   I+HRDLKP N+ I+    +K+GDFGLA
Sbjct: 113 FQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLA 155

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 68.2 bits (167), Expect = 1e-12
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 29/97 (29%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPL 60
           A  +++ I E + ++HS  I HRD+KP N+    +     +K+ DFG A           
Sbjct: 163 ASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAK---------- 212

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                             +   S T    T  Y APE
Sbjct: 213 ----------------ETTSHNSLTTPCYTPYYVAPE 233

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 68.9 bits (168), Expect = 1e-12
 Identities = 21/40 (52%), Positives = 28/40 (70%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI  GL  + S+GII+RDLK  N+ +D E H+KI DFG+ 
Sbjct: 450 EIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMC 489

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA---TNILQK 55
            REI+ GLSH+H   +IHRD+K  N+ +     VK+ DFG++      + +
Sbjct: 135 CREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGR 185

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 15/88 (17%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
            +  +  +H   +IHRDLKP N+ I+    +K+ DFGLA  I +  A           + 
Sbjct: 121 TLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGM- 179

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            V T  Y APE+
Sbjct: 180 --------------VEFVATRWYRAPEV 193

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 3/51 (5%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA---TNILQK 55
           LREI++GL ++HS+  IHRD+K  N+ +     VK+ DFG+A   T+   K
Sbjct: 125 LREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIK 175

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 43/242 (17%), Positives = 71/242 (29%), Gaps = 72/242 (29%)

Query: 3   RAWRLLREIIEGLSHIHSQ----------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
               +   +  GL+++H             I HRD+K  N+ +       I DFGLA   
Sbjct: 122 ELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKF 181

Query: 53  LQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTP 112
               +                     + DT   GQVGT  Y APE+    +    + F  
Sbjct: 182 EAGKS---------------------AGDT--HGQVGTRRYMAPEVLEGAINFQRDAF-- 216

Query: 113 QNYFSKQQKA----FYVEILRVLWGYLKAEVY---KDRPKTLEELKHNIRRENGPSTGSN 165
                   +       +    VLW     E+          ++E       E G      
Sbjct: 217 -------LRIDMYAMGL----VLW-----ELASRCTAADGPVDEYMLPFEEEIGQHPSLE 260

Query: 166 VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS 225
             + +   +K  P +   W+     + +   I+               C +HD   R S+
Sbjct: 261 DMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEE--------------CWDHDAEARLSA 306

Query: 226 EQ 227
             
Sbjct: 307 GC 308

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 1/45 (2%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNI 52
           ++I+EGL ++H   I+HRD+K  N+ I+     +KI DFG +  +
Sbjct: 129 KQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRL 173

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 67.5 bits (165), Expect = 2e-12
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 26/95 (27%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           + RL ++I+ G+ + H   ++HRDLKP N+ +D   + KI DFGL+   +      L   
Sbjct: 118 SRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSN--MMSDGEFL--- 172

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                             TS     G+  YAAPE+
Sbjct: 173 -----------------RTS----CGSPNYAAPEV 186

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 67.1 bits (164), Expect = 2e-12
 Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 11/63 (17%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHV-KIGDFGLATNILQKHAGPLARELT 65
           L R     +  IHS GI HRD+KP N+ ++ +D+  K+ DFG A     K   P +    
Sbjct: 150 LFR----AVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSA-----KKLIP-SEPSV 199

Query: 66  GYI 68
            YI
Sbjct: 200 AYI 202

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            RE ++ L  +HS  +IHRD+K  NI +  +  VK+ DFG    I
Sbjct: 122 CRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQI 166

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 19/43 (44%), Positives = 30/43 (69%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            L +++ GL++ H Q ++HRDLKP N+ I+    +K+ DFGLA
Sbjct: 105 FLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLA 147

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 66.1 bits (162), Expect = 3e-12
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 30/97 (30%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH--VKIGDFGLATNILQKHAGPL 60
           A  ++++++  + ++H  GI+HRDLKP N+ ++  E++  + I DFGL+           
Sbjct: 108 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSK---------- 157

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                               +   +   GT  Y APE
Sbjct: 158 -----------------MEQNGIMSTACGTPGYVAPE 177

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 66.2 bits (162), Expect = 4e-12
 Identities = 16/45 (35%), Positives = 29/45 (64%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
              +++ L+++H+QG+IHRD+K  +I +  +  VK+ DFG    I
Sbjct: 147 CEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQI 191

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 66.3 bits (162), Expect = 4e-12
 Identities = 18/49 (36%), Positives = 30/49 (61%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH 56
               ++GL+++HS  +IHRD+K  NI +     VK+GDFG A+ +   +
Sbjct: 160 THGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPAN 208

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 66.1 bits (162), Expect = 4e-12
 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 25/92 (27%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
            +   ++GL ++H   I+HRDLKP N+ +D    +K+ DFGLA                 
Sbjct: 117 YMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLA----------------- 159

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                    +F S + ++T QV T  Y APEL
Sbjct: 160 --------KSFGSPNRAYTHQVVTRWYRAPEL 183

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 65.3 bits (160), Expect = 5e-12
 Identities = 12/98 (12%), Positives = 28/98 (28%), Gaps = 32/98 (32%)

Query: 3   RAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPL 60
           +A +   ++  G++ +H+    I    L   ++ ID +   +I    +            
Sbjct: 112 QAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADV------------ 159

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                                    G++    + APE 
Sbjct: 160 ------------------KFSFQSPGRMYAPAWVAPEA 179

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 25/100 (25%), Positives = 42/100 (42%), Gaps = 35/100 (35%)

Query: 6   RLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYED-----HVKIGDFGLATNILQKHAG 58
           RL+ +I  G+ ++ +Q   I+HRDL+  NIF+   D       K+ DFGL+         
Sbjct: 126 RLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLS--------- 176

Query: 59  PLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
              ++               S  +  +G +G   + APE 
Sbjct: 177 ---QQ---------------SVHSV-SGLLGNFQWMAPET 197

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 3/52 (5%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA---TNILQKH 56
            R+++E L+ +HS+ IIHRDLK  N+ +  E  +++ DFG++      LQK 
Sbjct: 123 CRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKR 174

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 22/88 (25%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
           I+ GL +IHS  ++HRDLKP N+ ++    +KI DFGLA      H       LT Y   
Sbjct: 137 ILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH--DHTGFLTEY--- 191

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            V T  Y APE+
Sbjct: 192 -----------------VATRWYRAPEI 202

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 25/88 (28%), Positives = 32/88 (36%), Gaps = 26/88 (29%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
           I+ GL  +H  G++HRDL P NI +   + + I DF LA               T Y   
Sbjct: 143 ILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTADA------NKTHY--- 193

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            V    Y APEL
Sbjct: 194 -----------------VTHRWYRAPEL 204

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 25/93 (26%), Positives = 40/93 (43%), Gaps = 27/93 (29%)

Query: 6   RLLREIIEGLSHIHSQG-IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           ++    ++ L+H+     IIHRD+KP NI +D   ++K+ DFG++  +            
Sbjct: 129 KITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQL------------ 176

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                  +DS A        T   G   Y APE
Sbjct: 177 -------VDSIA-------KTRDAGCRPYMAPE 195

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 34/92 (36%), Positives = 45/92 (48%), Gaps = 28/92 (30%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           L+ +I+ GL +IHS  IIHRDLKP N+ ++ +  +KI DFGLA           A E+TG
Sbjct: 137 LIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLAR--------HTADEMTG 188

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           Y                    V T  Y APE+
Sbjct: 189 Y--------------------VATRWYRAPEI 200

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score = 65.8 bits (161), Expect = 6e-12
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 28/92 (30%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           L+ ++++GL +IHS G++HRDLKP N+ ++ +  +KI DFGLA     +HA     E+TG
Sbjct: 131 LVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLA-----RHADA---EMTG 182

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           Y                    V T  Y APE+
Sbjct: 183 Y--------------------VVTRWYRAPEV 194

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 65.0 bits (159), Expect = 6e-12
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNI-FIDYEDH--VKIGDFGLATNILQKHAGP 59
           A  +++ I E + ++HS  I HRD+KP N+ +     +  +K+ DFG A     +    
Sbjct: 119 ASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTGEKYDK 177

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score = 65.5 bits (160), Expect = 7e-12
 Identities = 32/92 (34%), Positives = 42/92 (45%), Gaps = 26/92 (28%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTG 66
           LL +++ G+ H+HS GIIHRDLKP NI +  +  +KI DFGLA              +T 
Sbjct: 132 LLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM------MTP 185

Query: 67  YILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
           Y                    V T  Y APE+
Sbjct: 186 Y--------------------VVTRYYRAPEV 197

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 65.1 bits (159), Expect = 8e-12
 Identities = 18/45 (40%), Positives = 29/45 (64%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           L+  ++GL ++H    IHRD+K  NI ++ E H K+ DFG+A  +
Sbjct: 131 LQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQL 175

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 65.3 bits (159), Expect = 8e-12
 Identities = 46/247 (18%), Positives = 85/247 (34%), Gaps = 75/247 (30%)

Query: 6   RLLREIIEGLSHIHSQG-IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           ++   +I+GL+++  +  I+HRD+KP NI ++    +K+ DFG++  +            
Sbjct: 135 KVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL------------ 182

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHGVKA-----------MYNQF 110
                  IDS A    ++     VGT  Y +PE      + V++           M    
Sbjct: 183 -------IDSMA----NSF----VGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGR 227

Query: 111 TPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSL 170
            P                + L      +V  D  +T    +   R  N     S    ++
Sbjct: 228 YP----------IPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAI 277

Query: 171 QKF-----QKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS 225
            +       + PP +         +S         FQ F+        CL  +P++R   
Sbjct: 278 FELLDYIVNEPPPKLPSG-----VFS-------LEFQDFV------NKCLIKNPAERADL 319

Query: 226 EQNLCQP 232
           +Q +   
Sbjct: 320 KQLMVHA 326

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 20/47 (42%), Positives = 30/47 (63%), Gaps = 4/47 (8%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED----HVKIGDFGLA 49
           LL +I++G+ ++H+  ++HRDLKP NI +  E      VKI D G A
Sbjct: 133 LLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFA 179

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score = 65.0 bits (159), Expect = 1e-11
 Identities = 32/88 (36%), Positives = 45/88 (51%), Gaps = 28/88 (31%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
           +++GL +IH+ GIIHRDLKP N+ ++ +  +KI DFGLA     + A     E+TGY   
Sbjct: 137 MLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLA-----RQADS---EMTGY--- 185

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            V T  Y APE+
Sbjct: 186 -----------------VVTRWYRAPEV 196

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 28/107 (26%), Positives = 39/107 (36%), Gaps = 38/107 (35%)

Query: 3   RAWRLLREIIEGLSHIHSQG---IIHRDLKPVNIFIDYEDH--------VKIGDFGLATN 51
                  +I  G++++H +    IIHRDLK  NI I  +          +KI DFGLA  
Sbjct: 106 ILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLA-- 163

Query: 52  ILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                     RE                H T+     G   + APE+
Sbjct: 164 ----------REW---------------HRTTKMSAAGAYAWMAPEV 185

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 27/93 (29%)

Query: 6   RLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           ++   I++ L ++  + G+IHRD+KP NI +D    +K+ DFG++  +            
Sbjct: 128 KMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRL------------ 175

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                  +D  A            G A Y APE
Sbjct: 176 -------VDDKA-------KDRSAGCAAYMAPE 194

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 64.7 bits (158), Expect = 1e-11
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 28/97 (28%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID--YEDHVKIGDFGLATNILQKHAGPLA 61
           A    ++++ G+S+ HS  I HRDLK  N  +D      +KI DFG              
Sbjct: 118 ARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGY------------- 164

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                       S +   H    +  VGT  Y APE+
Sbjct: 165 ------------SKSSVLHSQPKS-TVGTPAYIAPEV 188

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNI 52
           L + +EGL ++H++ I+H D+K  N+ +  +     + DFG A  +
Sbjct: 156 LGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCL 201

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 64.8 bits (158), Expect = 2e-11
 Identities = 18/41 (43%), Positives = 29/41 (70%), Gaps = 1/41 (2%)

Query: 10  EIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           EI+  L ++HS+  +++RDLK  N+ +D + H+KI DFGL 
Sbjct: 256 EIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLC 296

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 21/44 (47%), Positives = 28/44 (63%), Gaps = 5/44 (11%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLA 49
           LLR     L++IHS GI HRD+KP N+ +D     +K+ DFG A
Sbjct: 150 LLR----SLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSA 189

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 64.3 bits (157), Expect = 2e-11
 Identities = 20/44 (45%), Positives = 28/44 (63%), Gaps = 5/44 (11%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLA 49
           L R     L++IHS GI HRD+KP N+ +D +   +K+ DFG A
Sbjct: 165 LFR----SLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSA 204

>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Length = 465

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 28/124 (22%), Positives = 46/124 (37%), Gaps = 33/124 (26%)

Query: 320 DKLRRIFQLHGGAHFQTPLLTPLNSLTATSE-------------------TTASVMTRGG 360
           D +RR+++ +G    +TP +  L  L A                              G 
Sbjct: 34  DTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGS 93

Query: 361 SIVTLPHDLRIPFARYLAQNGSIVSM--KRYCIDRVFR-ERRVLGFHP-----RELYECA 412
               L  D  +P A Y+A++ + ++    RY +D VFR ER            R+  +C 
Sbjct: 94  EARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGER------AKDGRFRQFRQCD 147

Query: 413 FDIV 416
            D+V
Sbjct: 148 IDVV 151

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 30/88 (34%), Positives = 39/88 (44%), Gaps = 26/88 (29%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILP 70
           ++ G+ H+HS GIIHRDLKP NI +  +  +KI DFGLA              +T Y   
Sbjct: 173 MLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFM------MTPY--- 223

Query: 71  PIDSTAFYSHDTSHTGQVGTALYAAPEL 98
                            V T  Y APE+
Sbjct: 224 -----------------VVTRYYRAPEV 234

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 63.4 bits (155), Expect = 3e-11
 Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 5/48 (10%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-----HVKIGDFGLA 49
            L ++I G++  HS+  +HRDLKP N+ +   D      +KIGDFGLA
Sbjct: 137 FLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLA 184

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 27/93 (29%)

Query: 6   RLLREIIEGLSHIHSQG-IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           ++   I++ L H+HS+  +IHRD+KP N+ I+    VK+ DFG++  +            
Sbjct: 113 KIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYL------------ 160

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                  +D  A    D       G   Y APE
Sbjct: 161 -------VDDVA---KDID----AGCKPYMAPE 179

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 13/65 (20%)

Query: 7   LLREIIEGLSHIH--SQGIIHRDLKPVNIFIDYEDHV-KIGDFGLATNILQKHAGPLARE 63
           L+R     +  +H  S  + HRD+KP N+ ++  D   K+ DFG A     K   P +  
Sbjct: 138 LIR----SIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSA-----KKLSP-SEP 187

Query: 64  LTGYI 68
              YI
Sbjct: 188 NVAYI 192

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 34/105 (32%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI-----------DYEDHVKIGDFGLATNI 52
                  ++  +  +H   IIH D+KP N  +           D    + + D G +   
Sbjct: 174 VISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQS--- 230

Query: 53  LQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE 97
                              ID   F    T  T +  T+ +   E
Sbjct: 231 -------------------IDMKLF-PKGTIFTAKCETSGFQCVE 255

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 58.6 bits (142), Expect = 9e-10
 Identities = 6/47 (12%), Positives = 14/47 (29%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            A R ++ +       H  G+      P  + +  +  V +      
Sbjct: 130 GAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPATM 176

>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Length = 456

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 26/110 (23%), Positives = 38/110 (34%), Gaps = 19/110 (17%)

Query: 320 DKLRRIFQLHGGAHFQTPLLTPLNSLTATS-ETTASVM----TRGGSIVTLPHDLRIPFA 374
           D      +  G   +  P+L         + E     M    T+GG  V L  ++    A
Sbjct: 51  DVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLA 110

Query: 375 RYLAQNGSIVSM--KRYCIDRVFR-ERRVLGFHP-----RELYECAFDIV 416
           R L   G  + +  K Y I + +R E             RE Y+   DIV
Sbjct: 111 RLLLGKGRSLLLPAKWYSIPQCWRYEA------ITRGRRREHYQWNMDIV 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 4e-09
 Identities = 68/500 (13%), Positives = 141/500 (28%), Gaps = 131/500 (26%)

Query: 25  HRDLKPVNI--FIDYEDHVKIGDFGLATNILQKHAGPLARELTG-YILPPIDSTAFYSHD 81
           ++D+  V    F+D  D   + D     +IL K       E+    +     S       
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDM--PKSILSK------EEIDHIIMSKDAVSGTLRLFW 69

Query: 82  TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWG----YLKA 137
           T  + Q         E+     K + +    +          Y+E    L+     + K 
Sbjct: 70  TLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY 129

Query: 138 EVYKDRPKTLEELKH---NIRRENG------PSTG-----SNVQKSLQKFQKSPPSVYRE 183
            V   R +   +L+     +R            +G      +V  S +   K    ++  
Sbjct: 130 NVS--RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF-- 185

Query: 184 WRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSGLS 243
                 W  ++N          +L   QK     DP+    S+ +    + +    + L 
Sbjct: 186 ------WLNLKNCNSPE----TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235

Query: 244 VLGSEQ-----LLTCDHIPPP------------------------LVGET---VLQDMVR 271
            L   +     LL   ++                           L   T   +  D   
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 272 QTLSNPQSKGYKYLVAACFNQKVS--PADDITYD---ISL---------SRSANFSLLES 317
            TL+  + K    L+    + +    P + +T +   +S+         +   N+     
Sbjct: 296 MTLTPDEVKS---LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW--KHV 350

Query: 318 TGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYL 377
             DKL  I +              LN L   +E           +   P    IP     
Sbjct: 351 NCDKLTTIIESS------------LNVLE-PAEYRKMFD----RLSVFPPSAHIPTILL- 392

Query: 378 AQNGSIV--SMKRYCIDRV---FRERRVLGFHPRE----LYECAFDIVTNTPGVLTMGSL 428
               S++   + +  +  V     +  ++   P+E    +     ++           +L
Sbjct: 393 ----SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN---EYAL 445

Query: 429 RRCLMGSF---RRFNYGNIS 445
            R ++  +   + F+  ++ 
Sbjct: 446 HRSIVDHYNIPKTFDSDDLI 465

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 76/566 (13%), Positives = 149/566 (26%), Gaps = 194/566 (34%)

Query: 7   LLREII--EGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
           + + I+  E + HI            + +F       +         +L+ +   L   +
Sbjct: 41  MPKSILSKEEIDHIIMSK--DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI 98

Query: 65  -TGYILPPIDSTAF-YSHDTSHTG----------------QVGTALYAAPELDS------ 100
            T    P + +  +    D  +                  ++  AL    EL        
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLI 155

Query: 101 HG---------VKAMYNQFTPQNYFSKQQKAFYVEILRVLW---GYLKAEVYKDRPKTLE 148
            G            +   +  Q     +          + W       +   +   + L+
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFK----------IFWLNLKNCNSP--ETVLEMLQ 203

Query: 149 ELKHNI---------RRENGPSTGSNVQKSLQKFQKSPPSVYRE--------WRS----S 187
           +L + I            N      ++Q  L++  KS P  Y            +    +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP--YENCLLVLLNVQNAKAWNA 261

Query: 188 FEWS-----TVRNN-----IKSNFQHFLILIHQQ-------------KWCLNHDPSKRPS 224
           F  S     T R       + +     + L H               K+ L+  P   P 
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRPQDLPR 320

Query: 225 SEQNLCQP--ISLEGSS------------------------SGLSVLGSEQLLTC----- 253
            E     P  +S+   S                        S L+VL   +         
Sbjct: 321 -EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 254 ----D-HIPPPLVG-----------ETVLQDMVRQTLSNPQSKGYKYLVAACFNQKVSPA 297
                 HIP  L+              V+  + + +L   Q K     + + + +     
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 298 DDIT---------YDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTP----------- 337
           ++           Y+I  +  ++  L+    D+    +  H G H +             
Sbjct: 440 ENEYALHRSIVDHYNIPKTFDSD-DLIPPYLDQY--FYS-HIGHHLKNIEHPERMTLFRM 495

Query: 338 LLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRE 397
           +      L       ++     GSI+     L+  +  Y+  N           D  + E
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF-YKPYICDN-----------DPKY-E 542

Query: 398 RRV---LGFHPR---ELYECAF-DIV 416
           R V   L F P+    L    + D++
Sbjct: 543 RLVNAILDFLPKIEENLICSKYTDLL 568

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score = 56.0 bits (136), Expect = 8e-09
 Identities = 25/84 (29%), Positives = 33/84 (39%), Gaps = 23/84 (27%)

Query: 14  GLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID 73
           G++ +H    IHRD+K  NI +D     KI DFGLA                        
Sbjct: 145 GINFLHENHHIHRDIKSANILLDEAFTAKISDFGLAR------------------ASEKF 186

Query: 74  STAFYSHDTSHTGQVGTALYAAPE 97
           +    +  T  +  VGT  Y APE
Sbjct: 187 AQ---TVMT--SRIVGTTAYMAPE 205

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 31/95 (32%)

Query: 13  EGLSHIHSQG---IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYIL 69
            GL+++H      IIHRD+K  NI +D E    +GDFGLA     K              
Sbjct: 142 RGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLA-----K-------------- 182

Query: 70  PPIDSTAFYSHDTSH--TGQVGTALYAAPELDSHG 102
                     +  +H  T   GT  + APE  S G
Sbjct: 183 -------LMDYKDTHVTTAVRGTIGHIAPEYLSTG 210

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 27/86 (31%)

Query: 14  GLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID 73
           GL ++H++ IIHRD+K +NI +D     KI DFG++     K  G               
Sbjct: 151 GLHYLHTRAIIHRDVKSINILLDENFVPKITDFGIS-----K-KGT-------------- 190

Query: 74  STAFYSHDTSH--TGQVGTALYAAPE 97
                  D +H  T   GT  Y  PE
Sbjct: 191 -----ELDQTHLSTVVKGTLGYIDPE 211

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens} Length = 352

 Score = 52.8 bits (127), Expect = 9e-08
 Identities = 12/46 (26%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLA 49
           ++   +++ L  +H    +H ++   NIF+D ED   V +  +G A
Sbjct: 163 QVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFA 208

>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Length = 373

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 13/110 (11%)

Query: 320 DKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMT-----RGGSIVTLPHDLRIPFA 374
            +L    +  G     + L   +++L       +S         GG  V L  ++    A
Sbjct: 45  TRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIA 104

Query: 375 RYLAQNGSIVSM--KRYCIDRVFR-ERRVLGFHP-----RELYECAFDIV 416
           R  A   +      +    +RV+R                E  +   + +
Sbjct: 105 RMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERI 154

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A Length = 364

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 15/46 (32%), Positives = 28/46 (60%), Gaps = 2/46 (4%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLA 49
           +L   I++ L +IH    +H D+K  N+ ++Y++   V + D+GLA
Sbjct: 156 QLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLA 201

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens} Length = 345

 Score = 52.0 bits (125), Expect = 2e-07
 Identities = 13/46 (28%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLA 49
           +L   +++ L +IH    +H D+K  N+ + Y++   V + D+GL+
Sbjct: 155 QLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLS 200

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 18/39 (46%), Positives = 27/39 (69%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           I +G+ ++ ++  IHRDL   NI ++ E+ VKIGDFGL 
Sbjct: 123 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLT 161

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 19/44 (43%), Positives = 29/44 (65%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
           I +G+ ++ ++  IHRDL   NI ++ E+ VKIGDFGL   + Q
Sbjct: 154 ICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQ 197

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 21/41 (51%), Positives = 31/41 (75%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           ++I EG++++H+Q  IHRDL   N+ +D +  VKIGDFGLA
Sbjct: 141 QQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLA 181

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           I +G+ ++ S+  +HRDL   N+ ++ E  VKIGDFGL 
Sbjct: 135 ICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLT 173

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I  G++++     +HRDL+  NI +      K+ DFGLA
Sbjct: 286 AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLA 327

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 13/41 (31%), Positives = 24/41 (58%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            +   G+ ++ S+  IHRDL   N  +  ++ +KI DFG++
Sbjct: 220 GDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMS 260

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I  G++++     +HRDL+  NI +      K+ DFGLA
Sbjct: 369 AAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLA 410

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 49.9 bits (120), Expect = 6e-07
 Identities = 11/51 (21%), Positives = 22/51 (43%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAG 58
             ++ E + ++     +HRDL   N+ +  ++  K+ DFGL          
Sbjct: 123 SLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT 173

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 11  IIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           I +G+ ++ S+  +HRDL   NI ++ E HVKI DFGLA
Sbjct: 136 ICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLA 174

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 50.5 bits (121), Expect = 7e-07
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            +I   + ++  +  IHR+L   N  +     VK+ DFGL+
Sbjct: 325 TQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLS 365

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++ +G++ + S+  IHRDL   NI + +    KI DFGLA +I
Sbjct: 152 YQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDI 195

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 49.7 bits (119), Expect = 1e-06
 Identities = 11/50 (22%), Positives = 22/50 (44%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAG 58
            ++ E + ++     +HRDL   N+ +  ++  K+ DFGL          
Sbjct: 296 LDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDT 345

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I +G++++  + ++HRDL   N+ +    HVKI DFGLA
Sbjct: 123 CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH--VKIGDFGLATNILQKH 56
           +    I++ L  +H   IIH DLKP NI +  +    +K+ DFG +    Q+ 
Sbjct: 204 KFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRV 256

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 49.3 bits (118), Expect = 1e-06
 Identities = 17/42 (40%), Positives = 23/42 (54%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           LR I  G+ ++   G +HRDL   NI I+     K+ DFGL 
Sbjct: 153 LRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLG 194

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           LR I  G+ ++ +   +HRDL   NI ++     K+ DFGL+
Sbjct: 153 LRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLS 194

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I + ++++ S   +HRD+   NI +   + VK+GDFGL+
Sbjct: 119 SLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLS 160

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             ++ EG++ + S   IHRDL   N  +D +  VK+ DFG+ 
Sbjct: 110 CYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMT 151

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 14/42 (33%), Positives = 26/42 (61%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             ++   L+++ S+  +HRD+   N+ +   D VK+GDFGL+
Sbjct: 122 AYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLS 163

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I EG++ I  +  IHRDL+  NI +      KI DFGLA
Sbjct: 115 AAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLA 156

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 48.9 bits (117), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I EG++ I  +  IHRDL+  NI +      KI DFGLA
Sbjct: 290 SAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLA 331

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/42 (42%), Positives = 26/42 (61%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             ++ EG+ ++ S+  IHRDL   N+ +   D VKIGDFGL 
Sbjct: 127 AVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLM 168

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++ +G+  + S+  IHRDL   NI +  ++ VKI DFGLA +I
Sbjct: 200 FQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 243

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 15/42 (35%), Positives = 24/42 (57%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           LR +  G+ ++   G +HRDL   N+ +D     K+ DFGL+
Sbjct: 157 LRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLS 198

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 18/44 (40%), Positives = 28/44 (63%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++ +G+  + S+  IHRDL   NI +  ++ VKI DFGLA +I
Sbjct: 155 FQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDI 198

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 26/42 (61%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            +++ E + ++ S+  +HRDL   N  ++ +  VK+ DFGL+
Sbjct: 126 CKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLS 167

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I   + ++  +  IHRDL   N  +     VK+ DFGL+
Sbjct: 117 ATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLS 158

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 47.6 bits (114), Expect = 3e-06
 Identities = 12/42 (28%), Positives = 23/42 (54%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             ++ EG++++    +IHRDL   N  +     +K+ DFG+ 
Sbjct: 110 CLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMT 151

>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Length = 400

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 6/103 (5%)

Query: 320 DKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM----TRGGSIVTLPHDLRIPFAR 375
           D++     L G    +TP L    ++   S      +     + G+ + L  D+  P AR
Sbjct: 32  DQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIAR 91

Query: 376 YLAQNGSIVSM--KRYCIDRVFRERRVLGFHPRELYECAFDIV 416
            +A +    +   +      V+R ++  G  P E  +   +++
Sbjct: 92  LVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELI 134

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A Length = 336

 Score = 47.6 bits (112), Expect = 4e-06
 Identities = 22/159 (13%), Positives = 45/159 (28%), Gaps = 16/159 (10%)

Query: 4   AWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           A  +L ++   L+   +     HRDL   N+ +      K+       +           
Sbjct: 163 AKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSS--------TI 214

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
              G  +  ID T   S        V   +    +L +      ++ +      +  +  
Sbjct: 215 PSCGLQVSIIDYT--LSRLERDGIVVFCDVSMDEDLFTGDGDYQFDIYRLMKKENNNRWG 272

Query: 123 FYVEILRVLW-----GYLKAEVYKDRPKTLEELKHNIRR 156
            Y     VLW       +  ++          +K   R+
Sbjct: 273 EYHPYSNVLWLHYLTDKMLKQMTFKTKCNTPAMKQIKRK 311

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++  G+ ++  Q  +HRDL   N  +D    VK+ DFGLA +I
Sbjct: 131 LQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDI 174

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++  G+ ++ SQ  IHRDL   N+ +   + +KI DFGLA +I
Sbjct: 164 YQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDI 207

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 16/42 (38%), Positives = 27/42 (64%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I +G++++  + ++HRDL   N+ +    HVKI DFGLA
Sbjct: 123 CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLA 164

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 15/45 (33%), Positives = 28/45 (62%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
             ++ +G+ ++ S+  +HRDL   N  +D +  VK+ DFGLA ++
Sbjct: 134 GLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDM 178

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 15/44 (34%), Positives = 26/44 (59%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++ +G+  +  +  +HRDL   N+ + +   VKI DFGLA +I
Sbjct: 179 YQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDI 222

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           LL ++  G+ ++  +  +HRDL   N+ +    + KI DFGL+
Sbjct: 115 LLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLS 157

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 13/43 (30%), Positives = 25/43 (58%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
           L+ ++  G+ ++     +HRDL   N+ +  + + KI DFGL+
Sbjct: 122 LVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLS 164

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 14/43 (32%), Positives = 26/43 (60%)

Query: 7   LLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
              ++   L+++ S+  +HRD+   N+ +   D VK+GDFGL+
Sbjct: 496 YAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLS 538

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++  G+ ++ S+  IHRDL   N+ +  ++ +KI DFGLA +I
Sbjct: 198 YQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 241

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
             +I +G+ ++   G++HR+L   N+ +     V++ DFG+A
Sbjct: 121 GVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVA 162

>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290

 Score = 46.8 bits (111), Expect = 7e-06
 Identities = 21/141 (14%), Positives = 38/141 (26%), Gaps = 9/141 (6%)

Query: 320 DKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASV----MTRGGSIVTLPHDLRIPFAR 375
            ++ R F   G    ++P+L PL  +        +     + R      L   L      
Sbjct: 84  REITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYN 143

Query: 376 YLAQNGSIVSM--KRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLM 433
           YL +    +    K + I   +R+      H  E     F  + +     T  +L   + 
Sbjct: 144 YLRKLDRALPDPIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSG---CTRENLESIIT 200

Query: 434 GSFRRFNYGNISFAPHPRVLN 454
                             V  
Sbjct: 201 DFLNHLGIDFKIVGDSCMVFG 221

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 10  EIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           ++ +G++ + S+  IHRD+   N+ +      KIGDFGLA +I
Sbjct: 172 QVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDI 214

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 47.0 bits (112), Expect = 8e-06
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++  G+ ++ SQ  IHRDL   N+ +   + +KI DFGLA +I
Sbjct: 210 YQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDI 253

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 16/44 (36%), Positives = 28/44 (63%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            EI +G++++++   +HRDL   N  +  +  VKIGDFG+  +I
Sbjct: 145 GEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDI 188

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 16/48 (33%), Positives = 28/48 (58%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQK 55
             ++ +G+  + S+  +HRDL   N  +D +  VK+ DFGLA ++  K
Sbjct: 198 GLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDK 245

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            +I  G+ ++ SQ  +HRDL   N  +     VKIGDFG++ ++
Sbjct: 140 SQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDV 183

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 46.6 bits (111), Expect = 9e-06
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            +I  G+ ++ S+  IHRDL   N  +  +  V + DFGL+  I
Sbjct: 144 VDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKI 187

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 14/44 (31%), Positives = 26/44 (59%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            +I +G+ ++    ++HRDL   NI +     +KI DFGL+ ++
Sbjct: 157 WQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDV 200

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 13/44 (29%), Positives = 25/44 (56%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            LL ++  G+ ++  +  +HR+L   N+ +    + KI DFGL+
Sbjct: 440 ELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLS 483

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A* Length = 330

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-----VKIGDFGLAT 50
            +  ++I  + ++HS+ +I+RD+KP N  I    +     + I DF LA 
Sbjct: 109 MIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAK 158

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 13/45 (28%), Positives = 26/45 (57%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           + +I  G+ ++ S  ++H+DL   N+ +  + +VKI D GL   +
Sbjct: 134 VAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREV 178

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A Length = 296

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLA 49
            L  ++I  + +IHS+  IHRD+KP N  +        V I DFGLA
Sbjct: 109 LLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLA 155

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            +I  G+ ++ ++  +HRDL   N  +  +  V + DFGL+  I
Sbjct: 154 VDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKI 197

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
            ++  G+ ++     +HRDL   N  +     VKIGDFG++ +I
Sbjct: 165 SQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDI 208

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
            ++  G+ ++  +  IHRDL   NI +      KI DFGL+
Sbjct: 149 ADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLS 189

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 6   RLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDH------VKIGDFGLATNILQKH 56
           ++ ++++ GL ++H + GIIH D+KP N+ ++  D       +KI D G A    + +
Sbjct: 135 QISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHY 192

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 16/44 (36%), Positives = 26/44 (59%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
           R++  G++++  +  +HRDL   N  +     VKI DFGL+ NI
Sbjct: 181 RQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNI 224

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A* Length = 298

 Score = 43.9 bits (104), Expect = 5e-05
 Identities = 11/50 (22%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-----VKIGDFGLAT 50
              ++++  +  IH + +++RD+KP N  I   +      + + DFG+  
Sbjct: 110 MAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK 159

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group} Length = 483

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLAT 50
            L  ++I  +  +HS+  +HRD+KP N  +        V I DFGLA 
Sbjct: 107 MLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAK 154

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 6   RLLREIIEGLSHIHSQ--GIIHRDLKPVNIFIDYEDH--VKIGDFGLATNILQKH 56
           +  +++   L  + +    IIH DLKP NI +       +KI DFG +  + Q+ 
Sbjct: 161 KFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRI 215

>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Length = 434

 Score = 43.7 bits (104), Expect = 7e-05
 Identities = 23/128 (17%), Positives = 35/128 (27%), Gaps = 21/128 (16%)

Query: 301 TYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATS-ETTASVM--- 356
             D           +           +  G      P L  L+     S E         
Sbjct: 12  FRDFYPEDMDVEKFIF---KTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSF 68

Query: 357 -TRGGSIVTLPHDLRIPFARYLAQNGSIVS-MKRYCIDRVFR-ERRVLGFHP-----REL 408
             +GG  VTL  +      R +     +   ++ Y   +V+R E       P     RE 
Sbjct: 69  VDKGGREVTLIPEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEE------PQAGRYREH 122

Query: 409 YECAFDIV 416
           Y+   DI 
Sbjct: 123 YQFNADIF 130

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNI 52
           R+I  G  ++     IHRD+   N  +         KIGDFG+A +I
Sbjct: 147 RDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDI 193

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 9   REIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNI 52
           R+I  G  ++     IHRD+   N  +         KIGDFG+A +I
Sbjct: 188 RDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDI 234

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 8/54 (14%)

Query: 8   LREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH--------VKIGDFGLATNIL 53
            +++   +  +    +IH ++   NI +  E+         +K+ D G++  +L
Sbjct: 119 AKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVL 172

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	454
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4g85_A	517	Histidine-tRNA ligase, cytoplasmic; synthetase; 3.	99.98
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.98
3rac_A	373	Histidine-tRNA ligase; structural genomics, PSI-bi	99.97
3od1_A	400	ATP phosphoribosyltransferase regulatory subunit;	99.97
3net_A	465	Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas	99.97
3lc0_A	456	Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t	99.97
4g84_A	464	Histidine--tRNA ligase, cytoplasmic; synthetase; 2	99.97
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
1z7m_A	344	ATP phosphoribosyltransferase regulatory subunit;	99.97
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.97
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.97
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.97
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.97
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.97
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.96
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.96
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.96
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.96
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.96
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.96
1wu7_A	434	Histidyl-tRNA synthetase; ligase, structural genom	99.96
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.96
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.96
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.96
4e51_A	467	Histidine--tRNA ligase; seattle structural genomic	99.96
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.96
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.96
1h4v_B	421	Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA	99.96
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.96
1htt_A	423	Histidyl-tRNA synthetase; complex (tRNA synthetase	99.96
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.96
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.96
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.96
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.96
3niz_A	311	Rhodanese family protein; structural genomics, str	99.96
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.96
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.96
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.96
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.95
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.95
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.95
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.95
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.95
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.95
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.95
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.95
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.95
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.95
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.95
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.95
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.95
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.95
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.95
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.95
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.95
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.95
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.95
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.95
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.95
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.95
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.95
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.95
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.95
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.95
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.95
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.95
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.95
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.95
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.95
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.95
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.95
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.95
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.95
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.95
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.95
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.95
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.95
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.94
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.94
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.94
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.94
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.94
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.94
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.94
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.94
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.94
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.94
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.94
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.94
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.94
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.94
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.94
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.94
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.94
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.94
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.94
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.94
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.94
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.94
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.94
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.94
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.94
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.94
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.94
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.94
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.94
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.94
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.94
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.94
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.94
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.94
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.94
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.94
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.94
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.94
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.94
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.94
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.94
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.94
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.94
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.94
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.94
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.94
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.94
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.94
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.94
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.93
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.93
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.93
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.93
1usy_A	275	ATP phosphoribosyltransferase regulatory subunit;	99.93
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.93
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.93
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.93
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.93
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.93
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.93
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.93
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.93
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.93
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.93
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.93
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.93
3bhy_A	283	Death-associated protein kinase 3; death associate	99.93
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.93
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.93
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.93
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.93
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.93
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.93
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.93
1qe0_A	420	Histidyl-tRNA synthetase; class II tRNA synthetase	99.93
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.93
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.93
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.93
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.93
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.93
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.93
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.93
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.92
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.92
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.92
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.92
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.92
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.92
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.92
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.92
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.92
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.92
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.92
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.92
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.92
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.92
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.92
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.92
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.92
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.92
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.91
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.91
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.91
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.91
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.91
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.91
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.91
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.91
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.91
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.91
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.91
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.91
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.91
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.91
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.91
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.91
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.91
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.91
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.91
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.91
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.91
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.91
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.91
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.91
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.91
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.9
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.9
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.9
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.9
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.9
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.9
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.9
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.9
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.9
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.9
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.9
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.9
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.9
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.9
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.9
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.9
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.9
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.9
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.9
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.9
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.9
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.9
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.9
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.9
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.9
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.9
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.9
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.9
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.9
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.9
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.89
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.89
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.89
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.89
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.89
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.89
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.89
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.89
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.89
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.89
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.89
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.88
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.88
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.88
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.88
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.88
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.88
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.87
3a32_A	471	Probable threonyl-tRNA synthetase 1; aeropyrum per	99.87
2i4l_A	458	Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud	99.86
1nyr_A	645	Threonyl-tRNA synthetase 1; ATP, threonine, ligase	99.85
1evl_A	401	Threonyl-tRNA synthetase; amino acid recognition,	99.84
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.83
2j3l_A	572	Prolyl-tRNA synthetase; class II aminoacyl- T synt	99.83
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.83
1hc7_A	477	Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.83
1nj8_A	459	Proline-tRNA synthetase, proline--tRNA ligase; cla	99.81
1qf6_A	642	THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m	99.76
3uh0_A	460	Threonyl-tRNA synthetase, mitochondrial; threonine	99.73
3uqc_A	286	Probable conserved transmembrane protein; structur	99.72
1nj1_A	501	PROR, proline-tRNA synthetase, proline--tRNA ligas	99.72
3ial_A	518	Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase,	99.61
3dsq_A	288	Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t	99.57
4hvc_A	519	Bifunctional glutamate/proline--tRNA ligase; ligas	99.56
2zt5_A	693	Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP	99.55
2dq3_A	425	Seryl-tRNA synthetase; coiled-coil, homodimer, str	99.53
1ati_A	505	Glycyl-tRNA synthetase; protein biosynthesis, liga	99.51
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.5
3qtc_A	290	Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet	99.43
1ses_A	421	Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A	99.35
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	99.34
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.34
1nnh_A	294	Asparaginyl-tRNA synthetase-related peptide; struc	99.22
2cja_A	522	Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE	99.19
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.06
1x54_A	434	Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe	99.06
1wyd_A	429	Hypothetical aspartyl-tRNA synthetase; archaea, LI	98.99
1n9w_A	422	Aspartyl-tRNA synthetase 2; biosynthetic protein;	98.99
3vbb_A	522	Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l	98.91
1eov_A	487	ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy	98.88
1wle_A	501	Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo	98.87
3a74_A	493	Lysyl-tRNA synthetase; aminoacyl tRNA synthetase,	98.76
3qne_A	485	Seryl-tRNA synthetase, cytoplasmic; amino acid bio	98.72
3lss_A	484	Seryl-tRNA synthetase; aminoacyl-tRNA synthetase,	98.71
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.64
1e1o_A	504	Lysyl-tRNA synthetase, heat inducible; ligase, ami	98.57
3err_A	536	Fusion protein of microtubule binding domain from	98.52
3a5y_A	345	GENX, putative lysyl-tRNA synthetase; aminoacyl-tR	98.5
1b7y_A	350	Phers, protein (phenylalanyl-tRNA synthetase); enz	98.47
3l4g_A	508	Phenylalanyl-tRNA synthetase alpha chain; aminoacy	98.42
2du3_A	534	O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l	98.37
2xgt_A	435	Asparaginyl-tRNA synthetase, cytoplasmic; ligase,	98.35
3nem_A	438	Aspartyl-tRNA synthetase; rossmann fold, OB fold,	98.23
2rhq_A	294	Phenylalanyl-tRNA synthetase alpha chain; heterote	98.02
2du7_A	549	O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l	98.01
3mf2_A	346	BLL0957 protein; aminoacyl-tRNA synthetase, seryl-	97.98
3m4p_A	456	Ehasnrs, asparaginyl-tRNA synthetase, putative; am	97.97
1g5h_A	454	Mitochondrial DNA polymerase accessory subunit; in	97.93
3bju_A	521	Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase,	97.93
4ex5_A	529	Lysine--tRNA ligase; structural genomics, niaid, n	97.92
1c0a_A	585	Aspartyl tRNA synthetase; protein-RNA complex, lig	97.92
1l0w_A	580	Aspartyl-tRNA synthetase; space-grown crystal, dim	97.89
3pco_A	327	Phenylalanyl-tRNA synthetase, alpha subunit; amino	97.81
4ah6_A	617	Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo	97.74
3i7f_A	548	Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi	97.7
2odr_B	648	Phosphoseryl-tRNA synthetase; phosphoserine tRNA s	97.66
2odr_A	665	Phosphoseryl-tRNA synthetase; phosphoserine tRNA s	97.65
2odr_D	685	Phosphoseryl-tRNA synthetase; phosphoserine tRNA s	97.64
2odr_C	701	Phosphoseryl-tRNA synthetase; phosphoserine tRNA s	97.61
3ica_A	213	Phenylalanyl-tRNA synthetase beta chain; APC61692.	97.51
3ig2_A	213	Phenylalanyl-tRNA synthetase beta chain; phers, MC	97.48
3l4g_B	589	Phenylalanyl-tRNA synthetase beta chain; aminoacyl	97.43
3ikl_A	459	DNA polymerase subunit gamma-2, mitochondrial; tra	97.36
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.3
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.25
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.05
2rhq_B	795	Phenylalanyl-tRNA synthetase beta chain; heterotet	96.87
1b7y_B	785	Phers, protein (phenylalanyl-tRNA synthetase); enz	96.21
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	96.05
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	95.8
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	95.2
2pyw_A	420	Uncharacterized protein; 5-methylthioribose kinase	94.85
3cmq_A	415	Phenylalanyl-tRNA synthetase, mitochondrial; class	94.82
3pco_B	795	Phenylalanyl-tRNA synthetase, beta chain; aminoacy	94.08
2ppq_A	322	HSK, HK, homoserine kinase; structural genomics, M	92.61
1zyl_A	328	Hypothetical protein YIHE; putative protein kinase	92.58
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	92.31
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	92.25
3ats_A	357	Putative uncharacterized protein; hypothetical pro	91.79
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	90.59
3c5i_A	369	Choline kinase; choline, kinase, malaria, transfer	90.36
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	89.71
3i1a_A	339	Spectinomycin phosphotransferase; protein kinase,	89.16
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	88.64
2qg7_A	458	Ethanolamine kinase PV091845; malaria, SGC, struct	86.75
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	86.23
3f2s_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	86.12
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	85.64
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	83.38
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	83.36
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	82.73
3g15_A	401	CK, chetk-alpha, choline kinase alpha; non-protein	80.69

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=9.4e-38  Score=310.97  Aligned_cols=163  Identities=24%  Similarity=0.400  Sum_probs=131.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.+++||+.||+|||++|||||||||+|||++.+|++||+|||+|+.+.                         ...
T Consensus       170 ~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~-------------------------~~~  224 (346)
T 4fih_A          170 EQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS-------------------------KEV  224 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECC-------------------------SSS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecC-------------------------CCC
Confidence            4689999999999999999999999999999999999999999999998653                         122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...++.+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               ||
T Consensus       225 ~~~~~~~GTp~YmAPEvl~---~~~y~~~~--DiWSl--------------Gvilyeml~G~~---------------PF  270 (346)
T 4fih_A          225 PRRKSLVGTPYWMAPELIS---RLPYGPEV--DIWSL--------------GIMVIEMVDGEP---------------PY  270 (346)
T ss_dssp             CCBCCCCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             CcccccccCcCcCCHHHHC---CCCCCcHH--HHHHH--------------HHHHHHHHHCCC---------------CC
Confidence            3456689999999999998   67899999  99999              999999877654               45


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      .+.+..+.+..+.....+.++..           ...++++.+||     .+||+.||++|||++|+|+||||.+...
T Consensus       271 ~~~~~~~~~~~i~~~~~~~~~~~-----------~~~s~~~~dli-----~~~L~~dP~~R~ta~e~l~Hp~~~~~~~  332 (346)
T 4fih_A          271 FNEPPLKAMKMIRDNLPPRLKNL-----------HKVSPSLKGFL-----DRLLVRDPAQRATAAELLKHPFLAKAGP  332 (346)
T ss_dssp             TTSCHHHHHHHHHHSSCCCCSCG-----------GGSCHHHHHHH-----HHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred             CCcCHHHHHHHHHcCCCCCCCcc-----------ccCCHHHHHHH-----HHHcCCChhHCcCHHHHhcCHhhcCCCC
Confidence            55554555555543333332222           12347788999     9999999999999999999999997654

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=1.3e-37  Score=305.52  Aligned_cols=168  Identities=27%  Similarity=0.332  Sum_probs=135.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++|||||||||+|||++.++++||+|||+|+.+...                       ...
T Consensus       132 ~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~-----------------------~~~  188 (311)
T 4aw0_A          132 TCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-----------------------SKQ  188 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTT-----------------------TTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCC-----------------------CCc
Confidence            368899999999999999999999999999999999999999999999865321                       122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+.+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               ||
T Consensus       189 ~~~~~~~GTp~YmAPEvl~---~~~y~~~~--DiWSl--------------Gvilyeml~G~~---------------PF  234 (311)
T 4aw0_A          189 ARANSFVGTAQYVSPELLT---EKSACKSS--DLWAL--------------GCIIYQLVAGLP---------------PF  234 (311)
T ss_dssp             CCBCCCCSCGGGCCHHHHH---HSCBCHHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             ccccCcccCcccCCHHHHc---CCCCCcHH--HHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            3455679999999999998   77899999  99999              999999877654               55


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh------hcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN------LCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~------l~hp~f~  235 (454)
                      .+.+....+.++... ...+|+..             ++++.+||     ++||+.||++|||++|+      ++||||.
T Consensus       235 ~~~~~~~~~~~i~~~-~~~~p~~~-------------s~~~~dli-----~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~  295 (311)
T 4aw0_A          235 RAGNEGLIFAKIIKL-EYDFPEKF-------------FPKARDLV-----EKLLVLDATKRLGCEEMEGYGPLKAHPFFE  295 (311)
T ss_dssp             CCSSHHHHHHHHHHT-CCCCCTTC-------------CHHHHHHH-----HHHSCSSGGGSTTSGGGTCHHHHHTSGGGT
T ss_pred             CCCCHHHHHHHHHcC-CCCCCccc-------------CHHHHHHH-----HHHccCCHhHCcChHHHcCCHHHHCCCCcC
Confidence            555555555555533 34455442             37788999     99999999999999985      7889986


Q ss_pred             cCCCCCCCccCccccccC
Q psy7309         236 EGSSSGLSVLGSEQLLTC  253 (454)
Q Consensus       236 ~~~~~~~~~~~~~~ll~~  253 (454)
                      .        ++|+++.+.
T Consensus       296 ~--------idw~~l~~~  305 (311)
T 4aw0_A          296 S--------VTWENLHQQ  305 (311)
T ss_dssp             T--------CCCTTGGGS
T ss_pred             C--------CCHHHhcCC
Confidence            3        678887654

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=1.3e-37  Score=305.10  Aligned_cols=171  Identities=27%  Similarity=0.410  Sum_probs=136.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++|||||||||+|||++.+|++||+|||+|+....                         ..
T Consensus       126 ~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~-------------------------~~  180 (304)
T 3ubd_A          126 EDVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESID-------------------------HE  180 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccC-------------------------CC
Confidence            46889999999999999999999999999999999999999999999985431                         22


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+.+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               ||
T Consensus       181 ~~~~~~~GT~~YmAPE~~~---~~~y~~~~--DiwSl--------------GvilyemltG~~---------------PF  226 (304)
T 3ubd_A          181 KKAYSFCGTVEYMAPEVVN---RRGHTQSA--DWWSF--------------GVLMFEMLTGTL---------------PF  226 (304)
T ss_dssp             CCCCSCCCCGGGCCHHHHH---TSCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             ccccccccCcccCCHHHhc---cCCCCCCC--cccch--------------HHHHHHHHhCCC---------------CC
Confidence            3445679999999999998   67899998  99999              999999877654               55


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~  236 (454)
                      .+.+....+.++.+. ...+|...             ++++.+||     ++||+.||++||||     +|+++||||+.
T Consensus       227 ~~~~~~~~~~~i~~~-~~~~p~~~-------------s~~~~~li-----~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~  287 (304)
T 3ubd_A          227 QGKDRKETMTMILKA-KLGMPQFL-------------SPEAQSLL-----RMLFKRNPANRLGAGPDGVEEIKRHSFFST  287 (304)
T ss_dssp             CCSSHHHHHHHHHHC-CCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSTTCSTTTHHHHHTSGGGTT
T ss_pred             CCcCHHHHHHHHHcC-CCCCCCcC-------------CHHHHHHH-----HHHcccCHHHCCCCCcCCHHHHHcCccccC
Confidence            555555555555533 33445442             37788999     99999999999995     79999999974


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                              ++|+.+.+....||
T Consensus       288 --------idw~~l~~~~~~pP  301 (304)
T 3ubd_A          288 --------IDWNKLYRREIHPP  301 (304)
T ss_dssp             --------CCHHHHHTTCSCCS
T ss_pred             --------CCHHHHHhCCCCcC
Confidence                    57878776655554

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=2.5e-37  Score=299.14  Aligned_cols=158  Identities=26%  Similarity=0.320  Sum_probs=119.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.+++||+.||+|||++||+||||||+|||++.++++||+|||+|+....                          .
T Consensus       112 ~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~--------------------------~  165 (275)
T 3hyh_A          112 QEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTD--------------------------G  165 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCC--------------------------C
Confidence            46899999999999999999999999999999999999999999999985421                          2


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...++.+||+.|||||++.   +..| +.++  ||||+              ||++|||++|++               |
T Consensus       166 ~~~~~~~GT~~Y~APE~~~---~~~y~~~~~--DiwSl--------------Gvily~lltg~~---------------P  211 (275)
T 3hyh_A          166 NFLKTSCGSPNYAAPEVIS---GKLYAGPEV--DVWSC--------------GVILYVMLCRRL---------------P  211 (275)
T ss_dssp             ---------CTTSCHHHHS---SSSCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             CccCCeeECcccCChhhhc---CCCCCCChh--hhHHH--------------HHHHHHHHHCCC---------------C
Confidence            2344579999999999998   5555 5678  99999              999999877654               5


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      |.+.+....+..+... ...+|...             ++++.+||     ++||+.||++|||++|+++||||+...
T Consensus       212 F~~~~~~~~~~~i~~~-~~~~p~~~-------------s~~~~~li-----~~~L~~dP~~R~s~~eil~hpw~k~~~  270 (275)
T 3hyh_A          212 FDDESIPVLFKNISNG-VYTLPKFL-------------SPGAAGLI-----KRMLIVNPLNRISIHEIMQDDWFKVDL  270 (275)
T ss_dssp             SCCSSHHHHHHHHHHT-CCCCCTTS-------------CHHHHHHH-----HHHSCSSGGGSCCHHHHHHCHHHHTTC
T ss_pred             CCCCCHHHHHHHHHcC-CCCCCCCC-------------CHHHHHHH-----HHHccCChhHCcCHHHHHcCcccccCC
Confidence            5555555555555433 34445442             37788899     999999999999999999999998643

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=9.5e-37  Score=311.07  Aligned_cols=163  Identities=24%  Similarity=0.400  Sum_probs=131.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.+++||+.||+|||++|||||||||+|||++.+|++||+|||+|+.+.                         ...
T Consensus       247 ~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~-------------------------~~~  301 (423)
T 4fie_A          247 EQIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVS-------------------------KEV  301 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECC-------------------------SSC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECC-------------------------CCC
Confidence            4689999999999999999999999999999999999999999999998653                         123


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...++.+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               ||
T Consensus       302 ~~~~~~~GTp~YmAPEvl~---~~~y~~~~--DiWSl--------------Gvilyeml~G~~---------------PF  347 (423)
T 4fie_A          302 PRRKSLVGTPYWMAPELIS---RLPYGPEV--DIWSL--------------GIMVIEMVDGEP---------------PY  347 (423)
T ss_dssp             CCBCCCEECTTTCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             ccccccccCcCcCCHHHHC---CCCCCcHH--HHHHH--------------HHHHHHHHHCCC---------------CC
Confidence            3456789999999999998   67899999  99999              999999877654               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      .+.+....+..+.....+.++..           ...++++.+||     .+||+.||++||||+|+|+||||.+...
T Consensus       348 ~~~~~~~~~~~i~~~~~~~~~~~-----------~~~s~~~~dli-----~~~L~~dP~~R~ta~ell~Hp~~~~~~~  409 (423)
T 4fie_A          348 FNEPPLKAMKMIRDNLPPRLKNL-----------HKVSPSLKGFL-----DRLLVRDPAQRATAAELLKHPFLAKAGP  409 (423)
T ss_dssp             TTSCHHHHHHHHHHSCCCCCSCT-----------TSSCHHHHHHH-----HHHSCSSTTTSCCHHHHTTCGGGGGCCC
T ss_pred             CCcCHHHHHHHHHcCCCCCCccc-----------ccCCHHHHHHH-----HHHcCCChhHCcCHHHHhcCHHhcCCCC
Confidence            44444444554443333332222           12347788899     9999999999999999999999997543

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3.1e-37  Score=307.72  Aligned_cols=160  Identities=22%  Similarity=0.323  Sum_probs=130.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +++.|++||+.||+|||++|||||||||+|||++.+|++||+|||+|+.+...                         ..
T Consensus       126 ~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~-------------------------~~  180 (350)
T 4b9d_A          126 QILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNST-------------------------VE  180 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHH-------------------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCC-------------------------cc
Confidence            58899999999999999999999999999999999999999999999854321                         11


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ..+..+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               ||.
T Consensus       181 ~~~~~~GT~~YmAPE~l~---~~~y~~~~--DiwSl--------------GvilyemltG~~---------------PF~  226 (350)
T 4b9d_A          181 LARACIGTPYYLSPEICE---NKPYNNKS--DIWAL--------------GCVLYELCTLKH---------------AFE  226 (350)
T ss_dssp             HHHHHHSCCTTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC---------------SCC
T ss_pred             cccccCCCccccCHHHHC---CCCCCcHH--HHHHH--------------HHHHHHHHHCCC---------------CCC
Confidence            234568999999999998   67899999  99999              999999877654               566


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +.+....+.++.....+.++..             .++++.+||     .+||+.||++|||++|+|+||||.....
T Consensus       227 ~~~~~~~~~~i~~~~~~~~~~~-------------~s~~~~~li-----~~~L~~dP~~R~s~~e~l~hp~~~~~~~  285 (350)
T 4b9d_A          227 AGSMKNLVLKIISGSFPPVSLH-------------YSYDLRSLV-----SQLFKRNPRDRPSVNSILEKGFIAKRIE  285 (350)
T ss_dssp             CSSHHHHHHHHHHTCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSCCHHHHHTSHHHHTTGG
T ss_pred             CcCHHHHHHHHHcCCCCCCCcc-------------CCHHHHHHH-----HHHccCChhHCcCHHHHhcCHHhhcCCC
Confidence            6666666666554444333332             237788899     9999999999999999999999986443

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=6.4e-36  Score=291.54  Aligned_cols=156  Identities=26%  Similarity=0.344  Sum_probs=119.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.+++||+.||+|||++|  ||||||||+|||++. +|.+||+|||+|+...                         
T Consensus       129 ~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~-------------------------  183 (290)
T 3fpq_A          129 KVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR-------------------------  183 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCC-------------------------
Confidence            467899999999999999998  999999999999985 7899999999997421                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        ....++.+||+.|||||++.    ..|+.++  ||||+              ||++|||++|++              
T Consensus       184 --~~~~~~~~GTp~YmAPE~~~----~~y~~~~--DiwSl--------------Gvilyelltg~~--------------  227 (290)
T 3fpq_A          184 --ASFAKAVIGTPEFMAPEMYE----EKYDESV--DVYAF--------------GMCMLEMATSEY--------------  227 (290)
T ss_dssp             --TTSBEESCSSCCCCCGGGGG----TCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CCccCCcccCccccCHHHcC----CCCCcHH--HHHHH--------------HHHHHHHHHCCC--------------
Confidence              12344579999999999876    3599998  99999              999999877654              


Q ss_pred             CCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       |+.+.. .......+.....   |...+         ...++++.+||     .+||+.||++|||++|+|+||||++
T Consensus       228 -Pf~~~~~~~~~~~~i~~~~~---~~~~~---------~~~~~~~~~li-----~~~L~~dP~~R~s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          228 -PYSECQNAAQIYRRVTSGVK---PASFD---------KVAIPEVKEII-----EGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             -TTTTCSSHHHHHHHHTTTCC---CGGGG---------GCCCHHHHHHH-----HHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             -CCCCCCcHHHHHHHHHcCCC---CCCCC---------ccCCHHHHHHH-----HHHccCChhHCcCHHHHhcCccccC
Confidence             333322 2223333332221   11110         12336778888     9999999999999999999999985

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=301.65  Aligned_cols=188  Identities=27%  Similarity=0.384  Sum_probs=130.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.+.....                     ...
T Consensus       158 ~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~---------------------~~~  216 (398)
T 4b99_A          158 EHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPA---------------------EHQ  216 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC----------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccCcc---------------------ccc
Confidence            46899999999999999999999999999999999999999999999986532110                     123


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ...++.+||+.|||||++..  ...|+.++  ||||+              ||++|||++|++.     ..+.+..++..
T Consensus       217 ~~~~~~~GT~~Y~APEv~~~--~~~~~~~~--DiWSl--------------G~il~ell~G~~pF~g~~~~~~l~~I~~~  278 (398)
T 4b99_A          217 YFMTEYVATRWYRAPELMLS--LHEYTQAI--DLWSV--------------GCIFGEMLARRQLFPGKNYVHQLQLIMMV  278 (398)
T ss_dssp             CCCCSSCCCCTTCCHHHHTT--CSCCCTHH--HHHHH--------------HHHHHHHHHTSCSSCCSSHHHHHHHHHHH
T ss_pred             cccccceeChHhcCHHHhcC--CCCCCChh--heehh--------------HHHHHHHHHCCCCCCCCCHHHHHHHHHHh
Confidence            34567899999999999871  34578889  99999              9999998876652     33444444443


Q ss_pred             cCCCCCCchh---hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         157 ENGPSTGSNV---QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      .+.|......   ......+...    +|... ...|+.+.+. .++++.+||     .+||+.||++||||+|+|+|||
T Consensus       279 ~g~p~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~-~s~~~~dLl-----~~mL~~dP~~R~ta~e~L~Hp~  347 (398)
T 4b99_A          279 LGTPSPAVIQAVGAERVRAYIQS----LPPRQ-PVPWETVYPG-ADRQALSLL-----GRMLRFEPSARISAAAALRHPF  347 (398)
T ss_dssp             HCCCCGGGTC-----CHHHHHHS----SCCCC-CCCHHHHSTT-CCHHHHHHH-----HHHSCSSTTTSCCHHHHTTSGG
T ss_pred             cCCCChHHhhhhhhhhhhhhhhc----CCCcC-CCCHHHhCCC-CCHHHHHHH-----HHHCcCChhHCcCHHHHhcCHh
Confidence            4444322110   0001111101    11111 1234443333 247778888     9999999999999999999999


Q ss_pred             cccCCC
Q psy7309         234 SLEGSS  239 (454)
Q Consensus       234 f~~~~~  239 (454)
                      |.+...
T Consensus       348 f~~~~~  353 (398)
T 4b99_A          348 LAKYHD  353 (398)
T ss_dssp             GTTTCC
T ss_pred             hCcCCC
Confidence            997543

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=2.7e-35  Score=288.78  Aligned_cols=167  Identities=28%  Similarity=0.441  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++++++||++||+|||++|||||||||+|||++.++.+||+|||+|+...........             ........
T Consensus       119 ~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~-------------~~~~~~~~  185 (299)
T 4g31_A          119 VCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTV-------------LTPMPAYA  185 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCccceecCCCcccccc-------------cccccccc
Confidence            37889999999999999999999999999999999999999999999876432110000             00001223


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ..++.+||+.|||||++.   +..|+.++  ||||+              ||++|||+.......+..            
T Consensus       186 ~~~~~~GT~~YmAPE~~~---~~~y~~~~--DiwSl--------------Gvilyell~Pf~~~~~~~------------  234 (299)
T 4g31_A          186 RHTGQVGTKLYMSPEQIH---GNSYSHKV--DIFSL--------------GLILFELLYPFSTQMERV------------  234 (299)
T ss_dssp             ------CCCTTSCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHSCCSSHHHHH------------
T ss_pred             ccCCcccCccccCHHHHc---CCCCCCHH--HHHHH--------------HHHHHHHccCCCCccHHH------------
Confidence            456679999999999998   67899999  99999              999999654111111111            


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                           ..+..+.   ...+|...+          ..++...+||     ++||+.||++|||+.|+|+||||..
T Consensus       235 -----~~~~~~~---~~~~p~~~~----------~~~~~~~~li-----~~~L~~dP~~Rps~~eil~h~~~~~  285 (299)
T 4g31_A          235 -----RTLTDVR---NLKFPPLFT----------QKYPCEYVMV-----QDMLSPSPMERPEAINIIENAVFED  285 (299)
T ss_dssp             -----HHHHHHH---TTCCCHHHH----------HHCHHHHHHH-----HHHTCSSGGGSCCHHHHHTSGGGCC
T ss_pred             -----HHHHHHh---cCCCCCCCc----------ccCHHHHHHH-----HHHcCCChhHCcCHHHHhcCHhhCC
Confidence                 1111111   112222211          1125556788     9999999999999999999999985

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=4.6e-35  Score=290.63  Aligned_cols=168  Identities=23%  Similarity=0.243  Sum_probs=123.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ++++.+++||+.||+|||++|||||||||+|||++.+| ++||+|||+|+.+......                    ..
T Consensus       150 ~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~--------------------~~  209 (336)
T 4g3f_A          150 DRALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLG--------------------KS  209 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcc--------------------cc
Confidence            46889999999999999999999999999999999887 6999999999865321100                    01


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               |
T Consensus       210 ~~~~~~~~GT~~YmAPE~~~---~~~y~~~~--DiwSl--------------GvilyemltG~~---------------P  255 (336)
T 4g3f_A          210 LLTGDYIPGTETHMAPEVVM---GKPCDAKV--DIWSS--------------CCMMLHMLNGCH---------------P  255 (336)
T ss_dssp             ----CCCCCCGGGCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             eecCCccccCccccCHHHHC---CCCCCcHH--HHHHH--------------HHHHHHHHHCcC---------------C
Confidence            11234468999999999998   67899999  99999              999999877654               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh------------
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN------------  228 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~------------  228 (454)
                      |.+.+....+.++.....+ ++...          ...++.+.+||     .+||+.||++||||.|+            
T Consensus       256 f~~~~~~~~~~~i~~~~~~-~~~~~----------~~~s~~~~~li-----~~~L~~dP~~R~sa~el~~~l~~~l~~~~  319 (336)
T 4g3f_A          256 WTQYFRGPLCLKIASEPPP-IREIP----------PSCAPLTAQAI-----QEGLRKEPVHRASAMELRRKVGKALQEVG  319 (336)
T ss_dssp             STTTCCSCCHHHHHHSCCG-GGGSC----------TTSCHHHHHHH-----HHHTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHcCCCC-chhcC----------ccCCHHHHHHH-----HHHccCCHhHCcCHHHHHHHHHHHHhhhh
Confidence            4443333334444333221 11111          12237778888     99999999999999996            


Q ss_pred             -hcCcccccCCC
Q psy7309         229 -LCQPISLEGSS  239 (454)
Q Consensus       229 -l~hp~f~~~~~  239 (454)
                       |+|||+.+...
T Consensus       320 ~l~hPw~~~~~~  331 (336)
T 4g3f_A          320 GLKSPWKGEYKE  331 (336)
T ss_dssp             SSCSCSSSSCCC
T ss_pred             hccCCCcCCCCC
Confidence             67999876543

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.2e-34  Score=291.67  Aligned_cols=211  Identities=18%  Similarity=0.225  Sum_probs=122.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-CCeEEecccchhhhhhhcCCCccccccC---ccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLARELTG---YILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-~~vKL~DFGla~~~~~~~~~~~~~~~~~---~~~~~~~~~~~   77 (454)
                      .+++.+++||+.||+|||++|||||||||+|||++.+ +.+||+|||+|+................   ........+..
T Consensus       117 ~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (361)
T 4f9c_A          117 QEVREYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSIC  196 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC-----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCcccccccccccccccccccccccccc
Confidence            4789999999999999999999999999999999877 7999999999985432111000000000   00000000001


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch------hhHHHHH
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP------KTLEELK  151 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~------~~~~~l~  151 (454)
                      .......++.+||+.|||||++..  ...|+.++  ||||+              ||++|||++|++      ...+++.
T Consensus       197 ~~~~~~~~~~~GT~~Y~APE~l~~--~~~y~~~~--DiWSl--------------G~il~ell~G~~Pf~~~~~~~~~l~  258 (361)
T 4f9c_A          197 LSRRQQVAPRAGTPGFRAPEVLTK--CPNQTTAI--DMWSA--------------GVIFLSLLSGRYPFYKASDDLTALA  258 (361)
T ss_dssp             ---------CCCCGGGCCHHHHTT--CSCCCTHH--HHHHH--------------HHHHHHHHHTCSSSSCCSSHHHHHH
T ss_pred             ccccccccccccCccccCHHHHcC--CCCCCCcc--chhhh--------------HHHHHHHHHCCCCCCCCCCHHHHHH
Confidence            122334566799999999999871  34588889  99999              999999877664      2334444


Q ss_pred             HHhhhcCCC------------------CCCchhhhhhhhhccCCCCCCCccccccc---cccccccccccchhHHHHHHH
Q psy7309         152 HNIRRENGP------------------STGSNVQKSLQKFQKSPPSVYREWRSSFE---WSTVRNNIKSNFQHFLILIHQ  210 (454)
Q Consensus       152 ~~i~~~~~p------------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~li~~~~  210 (454)
                      .++...+.|                  .+..........+.. .....|.......   .........++++.+||    
T Consensus       259 ~I~~~~G~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl----  333 (361)
T 4f9c_A          259 QIMTIRGSRETIQAAKTFGKSILCSKEVPAQDLRKLCERLRG-MDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLL----  333 (361)
T ss_dssp             HHHHHHCHHHHHHHHHHTTEEEEESSCCCCCCHHHHHHHHC-----------------------CTTCCHHHHHHH----
T ss_pred             HHHHhcCCccchhhhhhccccccccccCcchhhhHHHHhhcc-ccccccccccccccccccccccccCCHHHHHHH----
Confidence            433322211                  111112222222211 1111111100000   00000122347778888    


Q ss_pred             HhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         211 QKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       211 ~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       ++||+.||++||||+|+|+||||++
T Consensus       334 -~~lL~~dP~~R~ta~eaL~Hp~f~~  358 (361)
T 4f9c_A          334 -DKLLDLNPASRITAEEALLHPFFKD  358 (361)
T ss_dssp             -HHHTCSCTTTSCCHHHHHTSGGGTT
T ss_pred             -HHHCcCChhHCcCHHHHhcCcccCC
Confidence             9999999999999999999999985

>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens}

Probab=99.98  E-value=2.5e-33  Score=294.73  Aligned_cols=154  Identities=26%  Similarity=0.449  Sum_probs=137.0

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----ccccEEEEcCCCCeEeeCC
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVMTRGGSIVTLPH  367 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~~~~~~~~d~~G~~~~Lr~  367 (454)
                      +.+.++.|++       |.++.++++|++.++++|++|||.+|.||+||+.+++..+    .+.+|+|.|++|+.++|||
T Consensus        68 ~~P~G~~D~l-------P~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRP  140 (517)
T 4g85_A           68 KTPKGTRDYS-------PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRY  140 (517)
T ss_dssp             CCCTTCCCBC-------HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECS
T ss_pred             eCCCCCCccC-------HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCC
Confidence            5667788888       8889999999999999999999999999999999998653    3679999999999999999


Q ss_pred             CCCHHHHHHHHHcCCCCceeeEeecCccccCCC--CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcE
Q psy7309         368 DLRIPFARYLAQNGSIVSMKRYCIDRVFRERRV--LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNIS  445 (454)
Q Consensus       368 d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~--~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~  445 (454)
                      |+|+|+||++++|. ..|+|+||+|+|||+++|  ++||+|||+|+||||+|..++..+|+|+|.++.++|+.+|++++.
T Consensus       141 d~T~~~aR~~~~~~-~~p~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~~  219 (517)
T 4g85_A          141 DLTVPFARYLAMNK-LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDFL  219 (517)
T ss_dssp             CSHHHHHHHHHHTT-CSCEEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHHHCCCCEE
T ss_pred             cCcHHHHHHHHhCC-CCCceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHhhcCCccc
Confidence            99999999999887 789999999999999987  579999999999999998646678999999999999999999999


Q ss_pred             EEcCcccc
Q psy7309         446 FAPHPRVL  453 (454)
Q Consensus       446 i~i~~~~~  453 (454)
                      |+|||+++
T Consensus       220 i~in~~~~  227 (517)
T 4g85_A          220 VKVNDRRI  227 (517)
T ss_dssp             EEEEEHHH
T ss_pred             ccccchhh
Confidence            99999864

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.98  E-value=1.3e-33  Score=301.01  Aligned_cols=170  Identities=25%  Similarity=0.342  Sum_probs=132.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.+++||+.||+|||++|||||||||+|||++.+|++||+|||+|+.+.                           .
T Consensus       292 ~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~---------------------------~  344 (689)
T 3v5w_A          292 ADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFS---------------------------K  344 (689)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECS---------------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecC---------------------------C
Confidence            3689999999999999999999999999999999999999999999998542                           1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ....+.+||+.|||||++..  +..|+.++  ||||+              ||++|||++|++               ||
T Consensus       345 ~~~~t~~GTp~YmAPEvl~~--~~~y~~~v--DiWSL--------------GvilYEmLtG~~---------------PF  391 (689)
T 3v5w_A          345 KKPHASVGTHGYMAPEVLQK--GVAYDSSA--DWFSL--------------GCMLFKLLRGHS---------------PF  391 (689)
T ss_dssp             CCCCSCCSCGGGCCHHHHST--TCCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             CCCCCccCCcCccCHHHHhC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            22345799999999999962  45799999  99999              999999877665               33


Q ss_pred             CCch---hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCcc
Q psy7309         162 TGSN---VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPI  233 (454)
Q Consensus       162 ~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~  233 (454)
                      .+.+   .......+. .....+|..+             ++++.+||     .+||+.||++|++     |+|+++|||
T Consensus       392 ~~~~~~~~~~i~~~i~-~~~~~~p~~~-------------S~~a~dLI-----~~lL~~dP~~Rl~~~~~ga~ei~~Hpf  452 (689)
T 3v5w_A          392 RQHKTKDKHEIDRMTL-TMAVELPDSF-------------SPELRSLL-----EGLLQRDVNRRLGCLGRGAQEVKESPF  452 (689)
T ss_dssp             CGGGCCCHHHHHHHHH-HCCCCCCTTS-------------CHHHHHHH-----HHHTCSCGGGCTTCSSSTHHHHTTSGG
T ss_pred             CCCChHHHHHHHHhhc-CCCCCCCccC-------------CHHHHHHH-----HHHccCCHhHCCCCCCCCHHHHhcCcc
Confidence            2211   111222222 2334445442             37888999     9999999999998     799999999


Q ss_pred             cccCCCCCCCccCccccccCCCCCC
Q psy7309         234 SLEGSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       234 f~~~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                      |..        ++|+.+......||
T Consensus       453 F~~--------idW~~l~~~~~~pP  469 (689)
T 3v5w_A          453 FRS--------LDWQMVFLQKYPPP  469 (689)
T ss_dssp             GTT--------CCHHHHHTTCSCCS
T ss_pred             ccC--------CCHHHHHcCCCCcC
Confidence            974        78888776554444

>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp}

Probab=99.97  E-value=9.7e-33  Score=277.50  Aligned_cols=171  Identities=13%  Similarity=0.062  Sum_probs=142.6

Q ss_pred             CCCChhHHHHHHHHhC--CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----c
Q psy7309         276 NPQSKGYKYLVAACFN--QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----S  349 (454)
Q Consensus       276 ~~~s~~~~~~~~~~f~--q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~  349 (454)
                      -.-|+.-+++.+++|+  +.++++.|++       |.++.++++|++.++++|++|||.+|.||+||+.+++..+    .
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~p~G~~d~l-------P~~~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~   78 (373)
T 3rac_A            6 GTRSAWGARAWEAVRGFADRPPGMQDGY-------PDFAKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPES   78 (373)
T ss_dssp             ------------CCCCCCCCCTTCCCCC-------TTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTS
T ss_pred             CCcCHHHHHHHHHHHhcCCCCCCccccC-------HHHHHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccc
Confidence            3456777888999999  8888999999       7888899999999999999999999999999999998653    3


Q ss_pred             -cccEEEEcCCCCeEeeCCCCCHHHHHHHHHcC--CCCceeeEeecCccccCCC------CCCccceEEEEEEEEEcCCC
Q psy7309         350 -ETTASVMTRGGSIVTLPHDLRIPFARYLAQNG--SIVSMKRYCIDRVFRERRV------LGFHPRELYECAFDIVTNTP  420 (454)
Q Consensus       350 -~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~--~~~~~k~~y~g~vfR~~~~------~~g~~rE~~Q~g~eiig~~~  420 (454)
                       ++||+|.|++|+.++||||+|+|+||+++++.  ...|+|+||+|+|||++++      +.||+|||+|+|+|++|.++
T Consensus        79 ~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d  158 (373)
T 3rac_A           79 SRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRTPIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEA  158 (373)
T ss_dssp             CCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCCCCEEEEEEEEEECC------------CEEEEEEEEEECSSCC
T ss_pred             hhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCCCeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCC
Confidence             68999999999999999999999999998752  2689999999999999988      89999999999999999876


Q ss_pred             CcccHHHHHHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         421 GVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       421 ~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                      ++.+|+|+|.++.++|+.+|+++++|+|||+++
T Consensus       159 ~~~aDaEvi~l~~~~l~~lgl~~~~i~l~~~~i  191 (373)
T 3rac_A          159 SVDVDMDVLRLLHEASAAAGVRHHRIVVSHARL  191 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCSCEEEEEETTH
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCceEEEecCHHH
Confidence            889999999999999999999999999999974

>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans}

Probab=99.97  E-value=3.7e-32  Score=275.74  Aligned_cols=155  Identities=15%  Similarity=0.214  Sum_probs=140.1

Q ss_pred             CCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----ccccEEEEcCCCCeEeeC
Q psy7309         291 NQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVMTRGGSIVTLP  366 (454)
Q Consensus       291 ~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~~~~~~~~d~~G~~~~Lr  366 (454)
                      -+.++++.|++       |.++.++++|++.++++|++|||.+|.||+||+.+++..+    .+++|+|.|++|+.++||
T Consensus        10 ~~~p~G~~d~l-------P~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LR   82 (400)
T 3od1_A           10 FEKPFGMRDTL-------PEWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLR   82 (400)
T ss_dssp             TCCCTTCCCBC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEEC
T ss_pred             ccCCCcchhcC-------HHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEEC
Confidence            34566788888       8888899999999999999999999999999999998643    368999999999999999


Q ss_pred             CCCCHHHHHHHHHcC--CCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCc
Q psy7309         367 HDLRIPFARYLAQNG--SIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNI  444 (454)
Q Consensus       367 ~d~T~p~aR~~a~~~--~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~  444 (454)
                      ||+|+|+||+++++.  ...|+|+||+|+|||+++++.||+|||+|+|+|+||.+ ++.+|+|+|.++.++|+.+|++++
T Consensus        83 pd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~Ref~Q~g~ei~G~~-~~~aDaEvi~l~~~~l~~lgl~~~  161 (400)
T 3od1_A           83 PDMTAPIARLVASSLKDRAYPLRLAYQSNVYRAQQNEGGKPAEFEQLGVELIGDG-TASADGEVIALMIAALKRAGLSEF  161 (400)
T ss_dssp             SCSHHHHHHHHHHHCSSSCSCEEEEEEEEEECCCC---CCCSEEEEEEEEEESCC-SHHHHHHHHHHHHHHHHHTTCCSE
T ss_pred             CCCHHHHHHHHHhhcccCCCCeEEEEEcCEEeCCCCCCCCCCccEEeEEEEECCC-ChHhHHHHHHHHHHHHHHCCCCce
Confidence            999999999999763  26899999999999999999999999999999999998 899999999999999999999999


Q ss_pred             EEEcCcccc
Q psy7309         445 SFAPHPRVL  453 (454)
Q Consensus       445 ~i~i~~~~~  453 (454)
                      +|+|||+++
T Consensus       162 ~i~l~~~~i  170 (400)
T 3od1_A          162 KVAIGHVGY  170 (400)
T ss_dssp             EEEEEEHHH
T ss_pred             EEEecCHHH
Confidence            999999974

>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP}

Probab=99.97  E-value=3.2e-32  Score=282.19  Aligned_cols=154  Identities=21%  Similarity=0.313  Sum_probs=133.6

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc---ccc-cEEEEcC---------
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT---SET-TASVMTR---------  358 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~---~~~-~~~~~d~---------  358 (454)
                      +.+.++.|++       |.++..+++|++.++++|++|||.+|.||+||+.+++..+   .++ ||+|.|+         
T Consensus        13 ~~p~G~~D~l-------P~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~   85 (465)
T 3net_A           13 STPSGFPEFL-------PSEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEK   85 (465)
T ss_dssp             SCCTTCCCCC-------HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC--------
T ss_pred             cCCCCccccC-------HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEeccccccccccc
Confidence            4566788888       8888999999999999999999999999999999998643   256 9999998         


Q ss_pred             ------CCCeEeeCCCCCHHHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCccc--HHHH
Q psy7309         359 ------GGSIVTLPHDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLT--MGSL  428 (454)
Q Consensus       359 ------~G~~~~Lr~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~--d~e~  428 (454)
                            +|+.++||||+|+|+||+++++..  ..|+|+||+|+|||+++++.||+|||+|||+|+||.+ ++.+  |+|+
T Consensus        86 ~~~~~~~g~~l~LRpd~T~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~~gr~Ref~Q~g~ei~G~~-~~~a~~DaEv  164 (465)
T 3net_A           86 DKSGDTGSEARALKFDQTVPLAAYIARHLNDLTFPFARYQMDVVFRGERAKDGRFRQFRQCDIDVVGRE-KLSLLYDAQM  164 (465)
T ss_dssp             --------CCEEECSCSHHHHHHHHHHHGGGSCSSEEEEECCEEECBC------CCEEEEEEEEEECSS-CCCHHHHHHH
T ss_pred             ccccCCCCCEEEeCCCChHHHHHHHHhcccccCCCeEEEEeccEEecCCCCCCCcceeEEeeEEEECCC-CccchhhHHH
Confidence                  389999999999999999998643  5799999999999999999999999999999999998 8999  9999


Q ss_pred             HHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         429 RRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       429 ~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                      |.++.++|+.+|+++++|+||||++
T Consensus       165 i~l~~~~l~~lgl~~~~i~in~~~~  189 (465)
T 3net_A          165 PAIITEIFEAVNIGDFVIRINNRKV  189 (465)
T ss_dssp             HHHHHHHHHHHTCSCEEEEEEEHHH
T ss_pred             HHHHHHHHHHcCCCceEEEECCHHH
Confidence            9999999999999999999999874

>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A

Probab=99.97  E-value=1.1e-31  Score=276.63  Aligned_cols=155  Identities=19%  Similarity=0.269  Sum_probs=138.6

Q ss_pred             CCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcCCCCeEee
Q psy7309         291 NQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTRGGSIVTL  365 (454)
Q Consensus       291 ~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~~G~~~~L  365 (454)
                      -+..+++.|++       |.++.++++|++.++++|++|||.+|.||+||+.+++..+     .+++|+|.|++|+.++|
T Consensus        29 ~~~p~G~~d~l-------P~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~L  101 (456)
T 3lc0_A           29 TEPVQGCRDFP-------PEAMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVAL  101 (456)
T ss_dssp             CSCSTTCCCCC-------HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEE
T ss_pred             ccCCCCCcccC-------HhHHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEec
Confidence            35667788888       8888999999999999999999999999999999998654     26799999999999999


Q ss_pred             CCCCCHHHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCC--
Q psy7309         366 PHDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNY--  441 (454)
Q Consensus       366 r~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~--  441 (454)
                      |||+|+|+||+++++..  ..|+|+||+|+|||+++++.||+|||+|+|+||||.+ ++.+|+|+|.++.++|+.+|+  
T Consensus       102 Rpd~T~~~aR~~~~~~~~~~~P~r~~y~g~vfR~e~~~~gR~ReF~Q~g~ei~G~~-~~~~DaEvi~l~~~~l~~lgl~~  180 (456)
T 3lc0_A          102 RPEMTPSLARLLLGKGRSLLLPAKWYSIPQCWRYEAITRGRRREHYQWNMDIVGVK-SVSAEVELVCAACWAMRSLGLSS  180 (456)
T ss_dssp             CSCSHHHHHHHHHHSCTTCCSSEEEEECCEEECCCC-----CCEEEEEEEEEESCC-STHHHHHHHHHHHHHHHHTTCCT
T ss_pred             CCcCHHHHHHHHHhcCcccCCCEEEEEeccEEecCCCCCCCccceEEEEEEEEcCC-ChHhhHHHHHHHHHHHHHcCCCC
Confidence            99999999999998753  4699999999999999999999999999999999998 899999999999999999999  


Q ss_pred             CCcEEEcCcccc
Q psy7309         442 GNISFAPHPRVL  453 (454)
Q Consensus       442 ~~~~i~i~~~~~  453 (454)
                      +++.|+||||++
T Consensus       181 ~~~~i~in~~~i  192 (456)
T 3lc0_A          181 KDVGIKVNSRKV  192 (456)
T ss_dssp             TTEEEEEEEHHH
T ss_pred             CceEEEEcCHHH
Confidence            799999999864

>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens}

Probab=99.97  E-value=5.5e-32  Score=281.20  Aligned_cols=155  Identities=26%  Similarity=0.440  Sum_probs=138.6

Q ss_pred             CCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc----ccccEEEEcCCCCeEeeC
Q psy7309         291 NQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT----SETTASVMTRGGSIVTLP  366 (454)
Q Consensus       291 ~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~----~~~~~~~~d~~G~~~~Lr  366 (454)
                      -+.+.++.|++       |.++.++++|++.++++|++|||++|.||+||+.+++..+    .+++|+|.|++|+.++||
T Consensus        14 ~~~p~G~~D~l-------P~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LR   86 (464)
T 4g84_A           14 LKTPKGTRDYS-------PRQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLR   86 (464)
T ss_dssp             CCCCTTCCCBC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEEC
T ss_pred             eeCCCCcCccC-------HHHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeC
Confidence            45667899998       8888999999999999999999999999999999998653    367999999999999999


Q ss_pred             CCCCHHHHHHHHHcCCCCceeeEeecCccccCCC--CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCc
Q psy7309         367 HDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRV--LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNI  444 (454)
Q Consensus       367 ~d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~--~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~  444 (454)
                      ||+|+|+||++++|. ..|+|+||+|+|||+++|  +.||+|||+|+|+|++|..++..+|+|+|.++.++|+.+|++++
T Consensus        87 Pd~T~~~aR~~~~~~-~~p~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~lgl~~~  165 (464)
T 4g84_A           87 YDLTVPFARYLAMNK-LTNIKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSSLQIGDF  165 (464)
T ss_dssp             SCSHHHHHHHHHHTT-CSCEEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHHHTCCCE
T ss_pred             CcCcHHHHHHHHhcC-CCCceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHHhCCCCc
Confidence            999999999999887 789999999999999987  56899999999999999864667899999999999999999999


Q ss_pred             EEEcCcccc
Q psy7309         445 SFAPHPRVL  453 (454)
Q Consensus       445 ~i~i~~~~~  453 (454)
                      .|+|||+++
T Consensus       166 ~i~i~~~~~  174 (464)
T 4g84_A          166 LVKVNDRRI  174 (464)
T ss_dssp             EEEEEEHHH
T ss_pred             ceeecchhh
Confidence            999999863

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.97  E-value=8e-33  Score=271.67  Aligned_cols=161  Identities=24%  Similarity=0.304  Sum_probs=113.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.+|+.||+.||+|||++|||||||||+|||++.++++||+|||+|+.....                       ...
T Consensus       132 ~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~-----------------------~~~  188 (307)
T 3omv_A          132 FQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRW-----------------------SGS  188 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccC-----------------------Ccc
Confidence            468899999999999999999999999999999999999999999999854321                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...+..+||+.|||||++.......|+.++  ||||+              ||++|||++|++               |+
T Consensus       189 ~~~~~~~GT~~ymAPE~l~~~~~~~y~~ks--DVwS~--------------Gvvl~Elltg~~---------------Pf  237 (307)
T 3omv_A          189 QQVEQPTGSVLWMAPEVIRMQDNNPFSFQS--DVYSY--------------GIVLYELMTGEL---------------PY  237 (307)
T ss_dssp             -----CCCCTTSCCHHHHHCCSSCCCCHHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             eeecccccCCCccCHHHhhccCCCCCCcHH--HhHhH--------------HHHHHHHHHCCC---------------CC
Confidence            234567899999999998633345689899  99999              999999877654               33


Q ss_pred             CCchhhhhh-hhhccCC-CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSL-QKFQKSP-PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~-~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+.+....+ ..+.... .+.++...          ...++.+.+|+     .+||+.||++|||+.|++++
T Consensus       238 ~~~~~~~~~~~~~~~~~~~p~~~~~~----------~~~~~~l~~li-----~~cl~~dP~~RPs~~ei~~~  294 (307)
T 3omv_A          238 SHINNRDQIIFMVGRGYASPDLSKLY----------KNCPKAMKRLV-----ADCVKKVKEERPLFPQILSS  294 (307)
T ss_dssp             TTCCCHHHHHHHHHTTCCCCCSTTSC----------TTSCHHHHHHH-----HHHTCSSSTTSCCHHHHHHH
T ss_pred             CCCChHHHHHHHHhcCCCCCCccccc----------ccchHHHHHHH-----HHHcCCCHhHCcCHHHHHHH
Confidence            332222211 1222111 11112111          11236677888     99999999999999988754

>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A*

Probab=99.97  E-value=1.2e-31  Score=266.97  Aligned_cols=154  Identities=15%  Similarity=0.217  Sum_probs=135.3

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc---c-----ccccEEEEcCCCCeE
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA---T-----SETTASVMTRGGSIV  363 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~---~-----~~~~~~~~d~~G~~~  363 (454)
                      +..+++.|++       |.++.++++|++.++++|++|||.+|.||+||+.+++..   +     .+++|+|.|++|+.+
T Consensus        23 ~~~~G~~d~l-------P~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l   95 (344)
T 1z7m_A           23 LLPEESAEMT-------LNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSI   95 (344)
T ss_dssp             CCCTTCCCCC-------HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEE
T ss_pred             CCCCCcccCC-------HHHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEE
Confidence            4566778887       888889999999999999999999999999999999854   2     368999999999999


Q ss_pred             eeCCCCCHHHHHHHHHcCCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCC
Q psy7309         364 TLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGN  443 (454)
Q Consensus       364 ~Lr~d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~  443 (454)
                      +||||+|+|+||+++++....|+|+||+|+|||+++++.||+|||+|+|+|++|.+ ++.+|+|+|.++.++|+.+|+++
T Consensus        96 ~LRpd~T~~~aR~~~~~~~~~P~rl~y~g~vfR~e~p~~gR~REF~Q~g~ei~g~~-~~~aDaEvi~l~~~~l~~lgl~~  174 (344)
T 1z7m_A           96 TLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGES-ADKSELEILSLALQVIEQLGLNK  174 (344)
T ss_dssp             EECCCSHHHHHHHHHTCCSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSC-HHHHHHHHHHHHHHHHHHHTCSS
T ss_pred             ecCCCCcHHHHHHHHhcCCCCCeEEEEECcEEccCCCCCCCcceeEEEEEEEEcCC-CcHHHHHHHHHHHHHHHHCCCCc
Confidence            99999999999999987435899999999999999999999999999999999988 88999999999999999999999


Q ss_pred             cEEEcCcccc
Q psy7309         444 ISFAPHPRVL  453 (454)
Q Consensus       444 ~~i~i~~~~~  453 (454)
                      ++|+|||+++
T Consensus       175 ~~i~l~~~gi  184 (344)
T 1z7m_A          175 TVFEIGSAKF  184 (344)
T ss_dssp             EEEEEEEHHH
T ss_pred             EEEEECCHHH
Confidence            9999999874

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.97  E-value=1.4e-32  Score=292.47  Aligned_cols=164  Identities=27%  Similarity=0.378  Sum_probs=129.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC--CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE--DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~--~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.+  +.+||+|||+|+.+..                         
T Consensus       255 ~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~-------------------------  309 (573)
T 3uto_A          255 DEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDP-------------------------  309 (573)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCT-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccC-------------------------
Confidence            3689999999999999999999999999999999854  7899999999986521                         


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                       .......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|.+               
T Consensus       310 -~~~~~~~~GT~~y~APEv~~---~~~y~~~~--DiWSl--------------Gvilyeml~G~~---------------  354 (573)
T 3uto_A          310 -KQSVKVTTGTAEFAAPEVAE---GKPVGYYT--DMWSV--------------GVLSYILLSGLS---------------  354 (573)
T ss_dssp             -TSEEEEECSSGGGCCHHHHT---TCCBCHHH--HHHHH--------------HHHHHHHHHSCC---------------
T ss_pred             -CCceeeeEECccccCHHHhC---CCCCCcHH--HHHHH--------------HHHHHHHHHCCC---------------
Confidence             22344578999999999998   77899999  99999              999999876653               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ||.+.+....+..+.... ..++...    |     ...++.+.+||     ++||+.||++|||++|+|+||||.....
T Consensus       355 Pf~~~~~~~~~~~i~~~~-~~~~~~~----~-----~~~s~~~~dli-----~~~L~~dp~~R~t~~e~l~Hpw~~~~~~  419 (573)
T 3uto_A          355 PFGGENDDETLRNVKSCD-WNMDDSA----F-----SGISEDGKDFI-----RKLLLADPNTRMTIHQALEHPWLTPGNA  419 (573)
T ss_dssp             SSCCSSHHHHHHHHHTTC-CCCCSGG----G-----TTSCHHHHHHH-----HTTSCSSGGGSCCHHHHHHSTTTSCCCC
T ss_pred             CCCCcCHHHHHHHHHhCC-CCCCccc----c-----cCCCHHHHHHH-----HHHccCChhHCcCHHHHhcCcCcCCCCC
Confidence            555555555555554332 2222221    1     12347788898     9999999999999999999999997654


Q ss_pred             C
Q psy7309         240 S  240 (454)
Q Consensus       240 ~  240 (454)
                      +
T Consensus       420 ~  420 (573)
T 3uto_A          420 P  420 (573)
T ss_dssp             T
T ss_pred             C
Confidence            3

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.97  E-value=1.9e-32  Score=271.99  Aligned_cols=155  Identities=16%  Similarity=0.228  Sum_probs=116.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.+|+.||+.||+|||+++||||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       158 ~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~-----------------------~~~  214 (329)
T 4aoj_A          158 GQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYST-----------------------DYY  214 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEEcccccceeccCC-----------------------Ccc
Confidence            467899999999999999999999999999999999999999999999865321                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+..+||+.|||||++.   +..|+.++  ||||+              ||++|||++ |+.               |
T Consensus       215 ~~~~~~~gt~~ymAPE~~~---~~~~~~~s--DvwS~--------------Gvvl~Ellt~G~~---------------P  260 (329)
T 4aoj_A          215 RVGGRTMLPIRWMPPESIL---YRKFTTES--DVWSF--------------GVVLWEIFTYGKQ---------------P  260 (329)
T ss_dssp             -----CCCCGGGCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eecCcccccccccChhhhc---CCCCCccc--cccch--------------HHHHHHHHcCCCC---------------C
Confidence            2334568999999999998   77899999  99999              999999876 443               5


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.+..+.+..+..+.....|..+             ++++.+|+     .+||+.||++|||++|++++
T Consensus       261 f~~~~~~~~~~~i~~g~~~~~p~~~-------------~~~~~~li-----~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          261 WYQLSNTEAIDCITQGRELERPRAC-------------PPEVYAIM-----RGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             TCSSCHHHHHHHHHHTCCCCCCTTC-------------CHHHHHHH-----HHHCCSSTTTSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCcccc-------------cHHHHHHH-----HHHcCcChhHCcCHHHHHHH
Confidence            5555555555555555555555543             26677888     99999999999999988763

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.97  E-value=1.9e-32  Score=269.46  Aligned_cols=155  Identities=20%  Similarity=0.248  Sum_probs=124.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.+|+.||+.||+|||+++||||||||+|||++.++++||+|||+|+.....                       ...
T Consensus       145 ~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~-----------------------~~~  201 (308)
T 4gt4_A          145 PDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAA-----------------------DYY  201 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGG-----------------------GCB
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCCEEECCcccceeccCC-----------------------Cce
Confidence            357889999999999999999999999999999999999999999999865421                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+..+||+.|||||++.   +..|+.++  ||||+              ||++||+++ |.               .|
T Consensus       202 ~~~~~~~gt~~ymAPE~l~---~~~~s~ks--DVwSf--------------Gvvl~El~t~g~---------------~P  247 (308)
T 4gt4_A          202 KLLGNSLLPIRWMAPEAIM---YGKFSIDS--DIWSY--------------GVVLWEVFSYGL---------------QP  247 (308)
T ss_dssp             CSSSSSCBCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTC---------------CT
T ss_pred             eEecccccCCcccCHHHHh---CCCCCccc--hhhhH--------------HHHHHHHHhCCC---------------CC
Confidence            2345578999999999998   67899999  99999              999999876 43               35


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.+.......+..+.....|...             ++...+++     .+||+.||++|||+.|++++
T Consensus       248 f~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~~~~li-----~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          248 YCGYSNQDVVEMIRNRQVLPCPDDC-------------PAWVYALM-----IECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             TTTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCcccc-------------hHHHHHHH-----HHHcCCChhHCcCHHHHHHH
Confidence            5555556666666655555555443             25667788     99999999999999998864

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.97  E-value=1.5e-32  Score=269.21  Aligned_cols=157  Identities=17%  Similarity=0.208  Sum_probs=124.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.+++.||+.||+|||+++||||||||+|||++.++++||+|||+|+.....                       ...
T Consensus       128 ~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~-----------------------~~~  184 (299)
T 4asz_A          128 SQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYST-----------------------DYY  184 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGG-----------------------GCE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECCcccceecCCC-----------------------Cce
Confidence            467899999999999999999999999999999999999999999999865321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......+||+.|||||++.   +..|+.++  ||||+              ||++|||++ |++               |
T Consensus       185 ~~~~~~~gt~~ymAPE~~~---~~~~~~k~--DVwS~--------------Gvvl~Ellt~G~~---------------P  230 (299)
T 4asz_A          185 RVGGHTMLPIRWMPPESIM---YRKFTTES--DVWSL--------------GVVLWEIFTYGKQ---------------P  230 (299)
T ss_dssp             EETTTEEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------T
T ss_pred             eecCceecChhhcCHHHHc---CCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1233457999999999998   77899999  99999              999999876 443               5


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      +.+.+..+.+..+..+.....|...             ++++.+|+     .+||+.||++|||++|++  +|+.
T Consensus       231 f~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~~~~li-----~~cl~~dP~~RPs~~~i~--~~L~  285 (299)
T 4asz_A          231 WYQLSNNEVIECITQGRVLQRPRTC-------------PQEVYELM-----LGCWQREPHMRKNIKGIH--TLLQ  285 (299)
T ss_dssp             TTTSCHHHHHHHHHHTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHH--HHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccc-------------hHHHHHHH-----HHHcCCChhHCcCHHHHH--HHHH
Confidence            5555555566666555555555543             26677888     999999999999999883  4554

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.97  E-value=2.5e-32  Score=273.41  Aligned_cols=155  Identities=21%  Similarity=0.316  Sum_probs=121.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +++..++.||+.||+|||+++||||||||+|||++.++.+||+|||+|+.+...                       ...
T Consensus       185 ~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~-----------------------~~~  241 (353)
T 4ase_A          185 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD-----------------------PDY  241 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTC-----------------------TTS
T ss_pred             HHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCCCCCEEECcchhhhhcccC-----------------------CCc
Confidence            457889999999999999999999999999999999999999999999865321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+..+||+.|||||++.   +..|+.++  ||||+              ||++|||++ |++               |
T Consensus       242 ~~~~~~~gt~~ymAPE~l~---~~~y~~ks--DVwS~--------------Gv~l~El~t~G~~---------------P  287 (353)
T 4ase_A          242 VRKGDARLPLKWMAPETIF---DRVYTIQS--DVWSF--------------GVLLWEIFSLGAS---------------P  287 (353)
T ss_dssp             EEETTEEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHTTTSCC---------------S
T ss_pred             eeeccccccccccCHHHHh---cCCCCCcc--cEeeh--------------HHHHHHHHhCCCC---------------C
Confidence            2334578999999999998   77899999  99999              999999876 443               4


Q ss_pred             CCCchh-hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNV-QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+... ......+..+..+..|...             +++..+++     .+||+.||++|||++|+++|
T Consensus       288 f~~~~~~~~~~~~i~~g~~~~~p~~~-------------~~~~~~li-----~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          288 YPGVKIDEEFCRRLKEGTRMRAPDYT-------------TPEMYQTM-----LDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             STTCCCSHHHHHHHHHTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHcCCCCCCCccC-------------CHHHHHHH-----HHHcCcChhHCcCHHHHHHH
Confidence            444332 2233344444455555443             26777888     99999999999999999886

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.96  E-value=1.5e-30  Score=258.48  Aligned_cols=159  Identities=25%  Similarity=0.335  Sum_probs=125.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++++||+|||+|....                          ..
T Consensus       114 ~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~--------------------------~~  167 (328)
T 3fe3_A          114 KEARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFT--------------------------VG  167 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGS--------------------------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecC--------------------------CC
Confidence            3688999999999999999999999999999999999999999999997542                          12


Q ss_pred             CCCcCcccccceecccccccccccccc-ccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYN-QFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~-~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......+||+.|+|||++.   +..|+ .++  ||||+              ||++|+|++|++               |
T Consensus       168 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~~--Diwsl--------------G~il~ell~g~~---------------p  213 (328)
T 3fe3_A          168 GKLDAFCGAPPYAAPELFQ---GKKYDGPEV--DVWSL--------------GVILYTLVSGSL---------------P  213 (328)
T ss_dssp             CGGGTTSSSGGGCCHHHHH---TCCCCSHHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             CccccccCCcceeCccccc---CCCcCCchh--hhhhh--------------HHHHHHHHhCCC---------------C
Confidence            2345578999999999987   45554 677  99999              999999776543               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +.+.+......++... ...+|...             ++.+.+||     ++||+.||.+|||++|+++||||.....
T Consensus       214 f~~~~~~~~~~~i~~~-~~~~p~~~-------------s~~~~~li-----~~~L~~dP~~R~t~~eil~h~~~~~~~~  273 (328)
T 3fe3_A          214 FDGQNLKELRERVLRG-KYRIPFYM-------------STDCENLL-----KRFLVLNPIKRGTLEQIMKDRWINAGHE  273 (328)
T ss_dssp             SCCSSHHHHHHHHHHC-CCCCCTTS-------------CHHHHHHH-----HHHCCSSTTTSCCHHHHTTCTTTTTTCT
T ss_pred             CCCCCHHHHHHHHHhC-CCCCCCCC-------------CHHHHHHH-----HHHCCCChhHCcCHHHHhcCHhhcCCCc
Confidence            4444444444444422 23334332             36677888     9999999999999999999999987554

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.96  E-value=1.3e-30  Score=259.75  Aligned_cols=171  Identities=23%  Similarity=0.351  Sum_probs=133.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+...                         ...
T Consensus       105 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~-------------------------~~~  159 (337)
T 1o6l_A          105 ERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGI-------------------------SDG  159 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC-------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcc-------------------------cCC
Confidence            4678999999999999999999999999999999999999999999987431                         112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  |+||+              ||++|||++|.+               |+
T Consensus       160 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~---------------Pf  205 (337)
T 1o6l_A          160 ATMKTFCGTPEYLAPEVLE---DNDYGRAV--DWWGL--------------GVVMYEMMCGRL---------------PF  205 (337)
T ss_dssp             CCBCCCEECGGGCCGGGGS---SSCBCTTH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             CcccccccChhhCChhhhc---CCCCCchh--hcccc--------------hhHHHHHhcCCC---------------CC
Confidence            2345678999999999998   67788888  99999              999999776553               34


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      .+.+.......+.. ....+|...             ++.+.++|     .+||+.||++||     |++|+++||||..
T Consensus       206 ~~~~~~~~~~~i~~-~~~~~p~~~-------------s~~~~~li-----~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~  266 (337)
T 1o6l_A          206 YNQDHERLFELILM-EEIRFPRTL-------------SPEAKSLL-----AGLLKKDPKQRLGGGPSDAKEVMEHRFFLS  266 (337)
T ss_dssp             CCSSHHHHHHHHHH-CCCCCCTTS-------------CHHHHHHH-----HHHTCSSTTTSTTCSTTTHHHHHTSGGGTT
T ss_pred             CCCCHHHHHHHHHc-CCCCCCCCC-------------CHHHHHHH-----HHHhhcCHHHhcCCCCCCHHHHHcCCCcCC
Confidence            34333333333332 233344432             37778888     999999999999     8999999999974


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                              ++|+.+.+....|+
T Consensus       267 --------~~~~~~~~~~~~pp  280 (337)
T 1o6l_A          267 --------INWQDVVQKKLLPP  280 (337)
T ss_dssp             --------CCHHHHHTTCSCCS
T ss_pred             --------CCHHHHHhCCCCCC
Confidence                    56777776665554

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.96  E-value=4e-31  Score=265.24  Aligned_cols=171  Identities=28%  Similarity=0.424  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++++||+|||+|+...                         ...
T Consensus       124 ~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~-------------------------~~~  178 (353)
T 3txo_A          124 ARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGI-------------------------CNG  178 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC-------------------------C--
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecc-------------------------cCC
Confidence            4688999999999999999999999999999999999999999999997431                         122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       179 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~G~~---------------Pf  224 (353)
T 3txo_A          179 VTTATFCGTPDYIAPEILQ---EMLYGPAV--DWWAM--------------GVLLYEMLCGHA---------------PF  224 (353)
T ss_dssp             -------CCGGGCCHHHHH---HHHCTTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             ccccccCCCcCeEChhhcC---CCCcCCcc--CCCcc--------------hHHHHHHHhCCC---------------CC
Confidence            3345578999999999998   67889888  99999              999999876553               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh------hhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS------EQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta------~e~l~hp~f~  235 (454)
                      .+.+......++.. ....+|...             ++.+.++|     ++||+.||++||++      +|+++||||.
T Consensus       225 ~~~~~~~~~~~i~~-~~~~~p~~~-------------~~~~~~li-----~~lL~~dP~~R~~~~~~~~~~~il~hp~f~  285 (353)
T 3txo_A          225 EAENEDDLFEAILN-DEVVYPTWL-------------HEDATGIL-----KSFMTKNPTMRLGSLTQGGEHAILRHPFFK  285 (353)
T ss_dssp             CCSSHHHHHHHHHH-CCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSTTSGGGTCTHHHHTSGGGT
T ss_pred             CCCCHHHHHHHHHc-CCCCCCCCC-------------CHHHHHHH-----HHHhhhCHHHccCCcccCCHHHHhhCCccc
Confidence            44444444444442 233445442             26677888     99999999999999      8999999998


Q ss_pred             cCCCCCCCccCccccccCCCCCC
Q psy7309         236 EGSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       236 ~~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                      .        ++|+.+......|+
T Consensus       286 ~--------~~w~~l~~~~~~~p  300 (353)
T 3txo_A          286 E--------IDWAQLNHRQIEPP  300 (353)
T ss_dssp             T--------CCHHHHHTTCSCCS
T ss_pred             C--------CCHHHHhcCcCCCC
Confidence            5        56666665544444

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.96  E-value=1.4e-30  Score=265.05  Aligned_cols=178  Identities=24%  Similarity=0.279  Sum_probs=131.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+...                         ...
T Consensus       153 ~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~-------------------------~~~  207 (396)
T 4dc2_A          153 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL-------------------------RPG  207 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC-------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecc-------------------------cCC
Confidence            4688999999999999999999999999999999999999999999997421                         122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC-
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP-  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p-  160 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+++....        ... 
T Consensus       208 ~~~~~~~gt~~Y~aPE~l~---~~~~~~~~--Diwsl--------------Gvllyell~G~~Pf~~~--------~~~~  260 (396)
T 4dc2_A          208 DTTSTFCGTPNYIAPEILR---GEDYGFSV--DWWAL--------------GVLMFEMMAGRSPFDIV--------GSSD  260 (396)
T ss_dssp             CCBCCCCBCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSCSSTTT--------TC--
T ss_pred             CccccccCCcccCCchhhc---CCCCChHH--HHHHH--------------HHHHHHHHhCCCCCccc--------cccc
Confidence            3455679999999999998   67889888  99999              99999977665422000        000 


Q ss_pred             CCCc-hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh------hhhhcCcc
Q psy7309         161 STGS-NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS------EQNLCQPI  233 (454)
Q Consensus       161 ~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta------~e~l~hp~  233 (454)
                      .... ........+. .....+|...             ++.+.+||     ++||+.||++|||+      +|+++|||
T Consensus       261 ~~~~~~~~~~~~~i~-~~~~~~p~~~-------------s~~~~~li-----~~lL~~dP~~R~~~~~~~~~~ei~~Hpf  321 (396)
T 4dc2_A          261 NPDQNTEDYLFQVIL-EKQIRIPRSL-------------SVKAASVL-----KSFLNKDPKERLGCHPQTGFADIQGHPF  321 (396)
T ss_dssp             ----CCHHHHHHHHH-HCCCCCCTTS-------------CHHHHHHH-----HHHTCSCTTTSTTCSTTTHHHHHHHSTT
T ss_pred             ccchhhHHHHHHHHh-ccccCCCCcC-------------CHHHHHHH-----HHHhcCCHhHcCCCCCCCCHHHHhcCcc
Confidence            0000 0111122222 2334445442             36778888     99999999999996      79999999


Q ss_pred             cccCCCCCCCccCccccccCCCCCC
Q psy7309         234 SLEGSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       234 f~~~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                      |..        ++|+.+.+....||
T Consensus       322 f~~--------i~w~~l~~~~~~pp  338 (396)
T 4dc2_A          322 FRN--------VDWDMMEQKQVVPP  338 (396)
T ss_dssp             TTT--------CCHHHHHTTCSCCS
T ss_pred             ccC--------CCHHHHHcCCCCCC
Confidence            974        67777776665555

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.96  E-value=9.1e-30  Score=263.69  Aligned_cols=206  Identities=25%  Similarity=0.306  Sum_probs=123.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCc--cCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGY--ILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~   79 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+.................  ............
T Consensus       156 ~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (458)
T 3rp9_A          156 LHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHTKN  235 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCcccccccccccccccc
Confidence            368899999999999999999999999999999999999999999999865321110000000000  000000000001


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-----------Cchh---
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-----------DRPK---  145 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-----------~~~~---  145 (454)
                      .....+..+||+.|+|||++..  ...|+.++  ||||+              ||++|||++           +++.   
T Consensus       236 ~~~~~~~~~gt~~Y~aPE~~~~--~~~~~~~~--DiwSl--------------G~il~elltg~~~~~~~~~~~~p~f~g  297 (458)
T 3rp9_A          236 LKRQLTGHVVTRWYRAPELILL--QENYTEAI--DVWSI--------------GCIFAELLNMIKENVAYHADRGPLFPG  297 (458)
T ss_dssp             ---------CCCTTCCHHHHTT--CCCCCTHH--HHHHH--------------HHHHHHHHTTSTTTCSSGGGCCCSCC-
T ss_pred             ccccccCCcccccccChHHhhC--CCCCCcHh--HHHHH--------------HHHHHHHHHhccccccccccccccCCC
Confidence            1234567899999999998751  46689888  99999              999999775           2221   


Q ss_pred             ----------------------hHHHHHHHhhhcCCCCCCch-------hhhhhhhhccCCCCCCCcccccccccccccc
Q psy7309         146 ----------------------TLEELKHNIRRENGPSTGSN-------VQKSLQKFQKSPPSVYREWRSSFEWSTVRNN  196 (454)
Q Consensus       146 ----------------------~~~~l~~~i~~~~~p~~~~~-------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~  196 (454)
                                            ..+++..++...+.|.....       .......+.......         +....+.
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~  368 (458)
T 3rp9_A          298 SSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKREGTD---------LAERFPA  368 (458)
T ss_dssp             -------------------CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCCCCC---------GGGGSTT
T ss_pred             CccccccccccccccccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCCCCC---------HHHHCCC
Confidence                                  12334333333333322110       011111111111111         1111111


Q ss_pred             ccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         197 IKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       197 ~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                       .++.+.+||     ++||..||++|||++|+|+||||......
T Consensus       369 -~s~~~~dLl-----~~mL~~dP~~R~t~~e~L~Hp~f~~~~~~  406 (458)
T 3rp9_A          369 -SSADAIHLL-----KRMLVFNPNKRITINECLAHPFFKEVRIA  406 (458)
T ss_dssp             -SCHHHHHHH-----HHHSCSSTTTSCCHHHHHHSGGGTTTCCG
T ss_pred             -CCHHHHHHH-----HHHhccCccccCCHHHHhcCHhhhhcCCC
Confidence             246777888     99999999999999999999999976544

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.96  E-value=1.7e-30  Score=259.84  Aligned_cols=171  Identities=30%  Similarity=0.437  Sum_probs=132.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+...                         ...
T Consensus       118 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~-------------------------~~~  172 (345)
T 1xjd_A          118 SRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM-------------------------LGD  172 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC-------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcc-------------------------cCC
Confidence            4688999999999999999999999999999999999999999999987431                         112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  |+||+              ||++|||++|.+               |+
T Consensus       173 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~---------------Pf  218 (345)
T 1xjd_A          173 AKTNTFCGTPDYIAPEILL---GQKYNHSV--DWWSF--------------GVLLYEMLIGQS---------------PF  218 (345)
T ss_dssp             CCBCCCCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             CcccCCCCCcccCChhhhc---CCCCCChh--hhHHH--------------HHHHHHHhcCCC---------------CC
Confidence            2345678999999999998   67788888  99999              999999776543               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh-hhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE-QNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~-e~l~hp~f~~~~~~  240 (454)
                      .+.+.......+... ...+|...             ++.+.++|     ++||+.||++|||+. |+++||||..    
T Consensus       219 ~~~~~~~~~~~i~~~-~~~~p~~~-------------s~~~~~li-----~~lL~~dp~~R~~~~~~i~~hp~f~~----  275 (345)
T 1xjd_A          219 HGQDEEELFHSIRMD-NPFYPRWL-------------EKEAKDLL-----VKLFVREPEKRLGVRGDIRQHPLFRE----  275 (345)
T ss_dssp             CCSSHHHHHHHHHHC-CCCCCTTS-------------CHHHHHHH-----HHHSCSSGGGSBTTBSCGGGSGGGTT----
T ss_pred             CCCCHHHHHHHHHhC-CCCCCccc-------------CHHHHHHH-----HHHhcCCHhHcCCChHHHHcCccccC----
Confidence            444444444444322 33344432             36778888     999999999999998 9999999974    


Q ss_pred             CCCccCccccccCCCCCC
Q psy7309         241 GLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       241 ~~~~~~~~~ll~~~~~~~  258 (454)
                          ++|+.+......|+
T Consensus       276 ----~~w~~l~~~~~~~p  289 (345)
T 1xjd_A          276 ----INWEELERKEIDPP  289 (345)
T ss_dssp             ----CCHHHHHTTCSCC-
T ss_pred             ----CCHHHHhhCCCCCC
Confidence                56777766555444

>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1

Probab=99.96  E-value=1.8e-29  Score=260.02  Aligned_cols=154  Identities=16%  Similarity=0.158  Sum_probs=141.1

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcCCCCeEeeC
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTRGGSIVTLP  366 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~~G~~~~Lr  366 (454)
                      +..+++.|++       |..+.++++|++.++++|++|||.+|.||+||+.+++..+     .++||+|.|++|+.++||
T Consensus         7 ~~~~G~~d~l-------P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~Lr   79 (434)
T 1wu7_A            7 EKIRGFRDFY-------PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLI   79 (434)
T ss_dssp             CCCTTCCCBC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEEC
T ss_pred             CCCCCCCcCC-------HHHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeC
Confidence            4556677777       8889999999999999999999999999999999998653     368999999999999999


Q ss_pred             CCCCHHHHHHHHHcCC-CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCC-c
Q psy7309         367 HDLRIPFARYLAQNGS-IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGN-I  444 (454)
Q Consensus       367 ~d~T~p~aR~~a~~~~-~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~-~  444 (454)
                      ||+|+|+||++++++. ..|+|+||+|+|||+++++.||+|||+|+|+|++|.+ +..+|+|++.++.++|+.+|+++ +
T Consensus        80 Pd~t~~~aR~~~~~~~~~lP~rl~~~g~vfR~erp~~gR~REF~Q~d~ei~g~~-~~~ad~E~i~~~~~~l~~lgl~~~~  158 (434)
T 1wu7_A           80 PEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD-SPEADAEVIALASSILDRLGLQDIY  158 (434)
T ss_dssp             SCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC-SHHHHHHHHHHHHHHHHHTTTTTSE
T ss_pred             CCChHHHHHHHHhcCCCCCCeEEEEEcCeecCCCCCCCCccceEEeeEEEEcCC-ChHhhHHHHHHHHHHHHHcCCCCce
Confidence            9999999999997742 3799999999999999999999999999999999998 88899999999999999999987 9


Q ss_pred             EEEcCcccc
Q psy7309         445 SFAPHPRVL  453 (454)
Q Consensus       445 ~i~i~~~~~  453 (454)
                      .|++||+++
T Consensus       159 ~i~l~~~g~  167 (434)
T 1wu7_A          159 EIRINSRKI  167 (434)
T ss_dssp             EEEEEEHHH
T ss_pred             EEEECChhh
Confidence            999999863

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.96  E-value=3.1e-30  Score=258.78  Aligned_cols=171  Identities=26%  Similarity=0.337  Sum_probs=133.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+...                         ...
T Consensus       121 ~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~-------------------------~~~  175 (353)
T 2i0e_A          121 PHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI-------------------------WDG  175 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC-------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccc-------------------------cCC
Confidence            4688999999999999999999999999999999999999999999987431                         112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  |+||+              ||++|||++|++               |+
T Consensus       176 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~G~~---------------Pf  221 (353)
T 2i0e_A          176 VTTKTFCGTPDYIAPEIIA---YQPYGKSV--DWWAF--------------GVLLYEMLAGQA---------------PF  221 (353)
T ss_dssp             CCBCCCCSCGGGCCHHHHT---TCCBSTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             cccccccCCccccChhhhc---CCCcCCcc--cccch--------------HHHHHHHHcCCC---------------CC
Confidence            2345578999999999998   67788888  99999              999999876553               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                      .+.+.......+.. ....+|...             ++.+.++|     ++||+.||.+||+     ++|+++||||..
T Consensus       222 ~~~~~~~~~~~i~~-~~~~~p~~~-------------s~~~~~li-----~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~  282 (353)
T 2i0e_A          222 EGEDEDELFQSIME-HNVAYPKSM-------------SKEAVAIC-----KGLMTKHPGKRLGCGPEGERDIKEHAFFRY  282 (353)
T ss_dssp             CCSSHHHHHHHHHH-CCCCCCTTS-------------CHHHHHHH-----HHHTCSCTTSCTTCSTTHHHHHHTSGGGTT
T ss_pred             CCCCHHHHHHHHHh-CCCCCCCCC-------------CHHHHHHH-----HHHhhcCHHHcCCCCCCCHHHHhcCccccC
Confidence            44444444444442 233444432             36778888     9999999999995     699999999973


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                              ++|+.+......||
T Consensus       283 --------~~w~~l~~~~~~~p  296 (353)
T 2i0e_A          283 --------IDWEKLERKEIQPP  296 (353)
T ss_dssp             --------CCHHHHHTTCSCCS
T ss_pred             --------CCHHHHHhCCCCCC
Confidence                    67777766555444

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.96  E-value=3.7e-30  Score=267.45  Aligned_cols=187  Identities=27%  Similarity=0.351  Sum_probs=123.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                          .
T Consensus       164 ~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~--------------------------~  217 (464)
T 3ttj_A          164 ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--------------------------S  217 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-------------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCC--------------------------C
Confidence            46789999999999999999999999999999999999999999999985421                          2


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...+..+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++     ...+++..++..
T Consensus       218 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~ell~g~~pF~g~~~~~~~~~i~~~  278 (464)
T 3ttj_A          218 FMMTPYVVTRYYRAPEVIL---GMGYKENV--DIWSV--------------GCIMGEMVRHKILFPGRDYIDQWNKVIEQ  278 (464)
T ss_dssp             CCC----CCCTTCCHHHHT---TCCCCTTH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             cccCCCcccccccCHHHHc---CCCCCHHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            3345679999999999998   67889888  99999              999999776554     334555555554


Q ss_pred             cCCCCCCc--hhhhhhhhhccC----CCCCCCcccccc--ccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh
Q psy7309         157 ENGPSTGS--NVQKSLQKFQKS----PPSVYREWRSSF--EWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN  228 (454)
Q Consensus       157 ~~~p~~~~--~~~~~~~~~~~~----~~~~~p~~~~~~--~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~  228 (454)
                      .+.|....  ........+...    ....++...+..  ..........++.+.+||     ++||+.||++|||++|+
T Consensus       279 lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl-----~~mL~~dP~~R~ta~e~  353 (464)
T 3ttj_A          279 LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLL-----SKMLVIDPAKRISVDDA  353 (464)
T ss_dssp             HCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHH-----HHHSCSSTTTSCCHHHH
T ss_pred             cCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHH-----HHHcCCChhhCCCHHHH
Confidence            45443221  011111111111    111111111000  000000011135567777     99999999999999999


Q ss_pred             hcCcccccCC
Q psy7309         229 LCQPISLEGS  238 (454)
Q Consensus       229 l~hp~f~~~~  238 (454)
                      |+||||....
T Consensus       354 L~Hp~~~~~~  363 (464)
T 3ttj_A          354 LQHPYINVWY  363 (464)
T ss_dssp             HTSTTTGGGC
T ss_pred             hcChhhhhcc
Confidence            9999998644

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.96  E-value=4.9e-30  Score=249.40  Aligned_cols=183  Identities=24%  Similarity=0.322  Sum_probs=123.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|....                         ...
T Consensus       101 ~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~-------------------------~~~  155 (292)
T 3o0g_A          101 EIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFG-------------------------IPV  155 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC-------------------------SCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecC-------------------------Ccc
Confidence            4688999999999999999999999999999999999999999999997542                         112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-ch-----hhHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-RP-----KTLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-~~-----~~~~~l~~~i~  155 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|+|+++ .+     .....+.....
T Consensus       156 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~l~~~~~p~~~~~~~~~~~~~i~~  217 (292)
T 3o0g_A          156 RCYSAEVVTLWYRPPDVLFG--AKLYSTSI--DMWSA--------------GCIFAELANAGRPLFPGNDVDDQLKRIFR  217 (292)
T ss_dssp             SCCCSCCSCGGGCCHHHHTT--CSCCCTHH--HHHHH--------------HHHHHHHTTTSCCSCCCSSHHHHHHHHHH
T ss_pred             ccccCCccccCCcChHHHcC--CCCcCchH--HHHHH--------------HHHHHHHHHcCCCCcCCCCHHHHHHHHHH
Confidence            33455688999999999871  23478888  99999              9999997743 33     12223333333


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ..+.|.... +......-........+..   ..+.... ...++.+.+||     ++||+.||++|||++|+|+||||.
T Consensus       218 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~li-----~~~L~~dP~~R~t~~e~l~hp~f~  287 (292)
T 3o0g_A          218 LLGTPTEEQ-WPSMTKLPDYKPYPMYPAT---TSLVNVV-PKLNATGRDLL-----QNLLKCNPVQRISAEEALQHPYFS  287 (292)
T ss_dssp             HHCCCCTTT-CTTGGGSTTCCCCCCCCTT---CCCTTTS-TTCCHHHHHHH-----HHHSCSSGGGSCCHHHHHTSGGGT
T ss_pred             HhCCCChhh-hhhhcccccccccccccCC---cchhhcc-cccChHHHHHH-----HHHhccChhhCCCHHHHhcCcccc
Confidence            233332221 1111100000011111111   0111111 12346677888     999999999999999999999998


Q ss_pred             cC
Q psy7309         236 EG  237 (454)
Q Consensus       236 ~~  237 (454)
                      ..
T Consensus       288 ~~  289 (292)
T 3o0g_A          288 DF  289 (292)
T ss_dssp             TC
T ss_pred             cC
Confidence            54

>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis}

Probab=99.96  E-value=2.8e-29  Score=259.92  Aligned_cols=154  Identities=14%  Similarity=0.119  Sum_probs=138.7

Q ss_pred             CCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCC-CC
Q psy7309         291 NQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRG-GS  361 (454)
Q Consensus       291 ~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~-G~  361 (454)
                      -+..+++.|++       |..+.++++|++.++++|++|||.+|.||+||+.+++..+        .++||+|.|++ |+
T Consensus        32 ~~~~~G~~d~l-------P~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~  104 (467)
T 4e51_A           32 LTGVKGMNDIL-------PQDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGE  104 (467)
T ss_dssp             CCCCTTCCCBC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCC
T ss_pred             CCCCCCceeeC-------HHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCC
Confidence            45667788888       8888899999999999999999999999999999987543        25899999999 99


Q ss_pred             eEeeCCCCCHHHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhC
Q psy7309         362 IVTLPHDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRF  439 (454)
Q Consensus       362 ~~~Lr~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~  439 (454)
                      .++||||+|+|+||+++.+..  ..|+|+||+|+|||+++++.||+|||+|+|+|+||.+ +..+|+|+|.++.++|+.+
T Consensus       105 ~l~LRPd~t~~~ar~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~ReF~Q~d~ei~g~~-~~~adaEvi~l~~~~l~~l  183 (467)
T 4e51_A          105 NLTLRPENTAAVVRAAIEHNMLYDGPKRLWYIGPMFRHERPQRGRYRQFHQVGVEALGFA-GPDADAEIVMMCQRLWEDL  183 (467)
T ss_dssp             EEEECSCSHHHHHHHHHHTTTTTTSCEEEEEEEEEECCCCC---CCSEEEEEEEEEETCC-CSHHHHHHHHHHHHHHHHH
T ss_pred             EEEeCcccHHHHHHHHHHcccccCCCEEEEEEccEEccCCCCCCCcCceEEEEEEEEeCC-ChHHHHHHHHHHHHHHHHc
Confidence            999999999999999987642  4699999999999999999999999999999999998 8899999999999999999


Q ss_pred             CCCCcEEEcCccc
Q psy7309         440 NYGNISFAPHPRV  452 (454)
Q Consensus       440 ~~~~~~i~i~~~~  452 (454)
                      |+++++|+|||++
T Consensus       184 Gl~~~~i~in~~g  196 (467)
T 4e51_A          184 GLTGIKLEINSLG  196 (467)
T ss_dssp             TCCCEEEEEEECC
T ss_pred             CCCceEEEEeCCC
Confidence            9999999999986

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.96  E-value=4.1e-30  Score=251.81  Aligned_cols=180  Identities=25%  Similarity=0.325  Sum_probs=121.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+...                          ..
T Consensus       120 ~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~--------------------------~~  173 (308)
T 3g33_A          120 ETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYS--------------------------YQ  173 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSCTTTST--------------------------TC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCccccccC--------------------------CC
Confidence            4688999999999999999999999999999999999999999999997542                          12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|+|+++++.     ....+...+..
T Consensus       174 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~~l~~g~~pf~~~~~~~~~~~i~~~  234 (308)
T 3g33_A          174 MALTPVVVTLWYRAPEVLL---QSTYATPV--DMWSV--------------GCIFAEMFRRKPLFCGNSEADQLGKIFDL  234 (308)
T ss_dssp             CCSGGGGCCCSSCCHHHHH---TSCCCSTH--HHHHH--------------HHHHHHTTTSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccCCccccccccCchHHc---CCCCCchH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            2345678999999999997   66788888  99999              9999998876652     22222222222


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ...|....... ...    .....++...+ ..+.... ...++.+.+||     .+||+.||++|||+.|+|+||||..
T Consensus       235 ~~~~~~~~~~~-~~~----~~~~~~~~~~~-~~~~~~~-~~~~~~~~~li-----~~~L~~dP~~R~t~~e~l~h~~~~~  302 (308)
T 3g33_A          235 IGLPPEDDWPR-DVS----LPRGAFPPRGP-RPVQSVV-PEMEESGAQLL-----LEMLTFNPHKRISAFRALQHSYLHK  302 (308)
T ss_dssp             HCCCCTTTSCS-SCS----SCGGGSCCCCC-CCHHHHS-CSCCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSTTC--
T ss_pred             hCCCChhhccc-hhh----ccccccCCCCC-CcHHHhC-ccccHHHHHHH-----HHHhcCCCccCCCHHHHhcCccccC
Confidence            22222111000 000    00000110000 0011111 12336667787     9999999999999999999999986


Q ss_pred             CC
Q psy7309         237 GS  238 (454)
Q Consensus       237 ~~  238 (454)
                      ..
T Consensus       303 ~~  304 (308)
T 3g33_A          303 DE  304 (308)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A

Probab=99.96  E-value=7.2e-29  Score=254.61  Aligned_cols=153  Identities=12%  Similarity=0.197  Sum_probs=139.7

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-c-------cccEEEEcCCCCeE
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-S-------ETTASVMTRGGSIV  363 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-~-------~~~~~~~d~~G~~~  363 (454)
                      +..+++.|++       |..+.++++|++.++++|++|||.+|.||+||+.+++..+ +       +++|+|.|++|+.+
T Consensus         4 ~~~~G~~d~l-------P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l   76 (421)
T 1h4v_B            4 RAVRGTKDLF-------GKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSL   76 (421)
T ss_pred             CCCCCCCCcC-------HHHHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEE
Confidence            3455677777       8888899999999999999999999999999999998654 1       48999999999999


Q ss_pred             eeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Q psy7309         364 TLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFN  440 (454)
Q Consensus       364 ~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~  440 (454)
                      +||||+|+|+||+++++..   ..|+|+||+|+|||+++++.||+|||+|+|+|++|.+ +..+|+|++.++.++|+.+|
T Consensus        77 ~Lrpd~t~~~ar~~~~~~~~~~~lP~rl~~~g~vfR~e~p~~gR~REf~Q~g~e~~g~~-~~~ad~e~i~~~~~~l~~lg  155 (421)
T 1h4v_B           77 TLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSE-NPILDAEAVVLLYECLKELG  155 (421)
T ss_pred             eeCCcchHHHHHHHHhccccccCCCeEEEEecCeecCCCCCCCCcccEEEccEEEECCC-ChhhhHHHHHHHHHHHHHcC
Confidence            9999999999999986531   4799999999999999999999999999999999998 88999999999999999999


Q ss_pred             CCCcEEEcCccc
Q psy7309         441 YGNISFAPHPRV  452 (454)
Q Consensus       441 ~~~~~i~i~~~~  452 (454)
                      ++++.|.+||++
T Consensus       156 l~~~~i~i~~~g  167 (421)
T 1h4v_B          156 LRRLKVKLSSVG  167 (421)
T ss_pred             CCceEEEEcCCC
Confidence            999999999975

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.96  E-value=1.4e-29  Score=260.68  Aligned_cols=204  Identities=25%  Similarity=0.318  Sum_probs=125.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+............+....   ...........
T Consensus       129 ~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  205 (432)
T 3n9x_A          129 EHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEEN---EEPGPHNKNLK  205 (432)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCccccccccccccccccccc---ccccccccchh
Confidence            468899999999999999999999999999999999999999999999865321110000000000   00000000112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-----------chh-----
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-----------RPK-----  145 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-----------~~~-----  145 (454)
                      ...+..+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|           .+.     
T Consensus       206 ~~~~~~~gt~~Y~APE~~~~--~~~~~~~~--DiwSl--------------G~il~ell~g~~p~~~~~~~~~p~f~g~~  267 (432)
T 3n9x_A          206 KQLTSHVVTRWYRAPELILL--QENYTKSI--DIWST--------------GCIFAELLNMLQSHINDPTNRFPLFPGSS  267 (432)
T ss_dssp             -----CCCCCTTCCHHHHTT--CSCCCTHH--HHHHH--------------HHHHHHHHTTCTTTCSSGGGCCCSCCCSC
T ss_pred             ccccCCCCCccccCHHHHhc--CCCCCccc--ccchH--------------HHHHHHHHhcccccccccccccccCCCcc
Confidence            34567899999999999752  46688888  99999              9999997742           221     


Q ss_pred             -----------------hHHHHHHHhhhcCCCCCCc-------hhhhhhhhhccCCCCCCCccccccccccccccccccc
Q psy7309         146 -----------------TLEELKHNIRRENGPSTGS-------NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNF  201 (454)
Q Consensus       146 -----------------~~~~l~~~i~~~~~p~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~  201 (454)
                                       ..+++..++...+.|....       ........+......         .+....+ ..++.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~ql~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~s~~  337 (432)
T 3n9x_A          268 CFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKYIKLFPHRKPI---------NLKQKYP-SISDD  337 (432)
T ss_dssp             SCC----------CHHHHHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCCCCC---------CHHHHST-TSCHH
T ss_pred             ccccCcccccccccccchHHHHHHHHHhcCCCCHHHHHhccCHHHHHHHHhCCCCCCC---------CHHHHCC-CCCHH
Confidence                             2344544444444443211       111111111111111         1111111 12477


Q ss_pred             hhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCCC
Q psy7309         202 QHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSSG  241 (454)
Q Consensus       202 ~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~~  241 (454)
                      +.+||     ++||+.||++|||++|+|+||||.......
T Consensus       338 ~~dLl-----~~mL~~dP~~R~ta~e~L~Hp~f~~~~~~~  372 (432)
T 3n9x_A          338 GINLL-----ESMLKFNPNKRITIDQALDHPYLKDVRKKK  372 (432)
T ss_dssp             HHHHH-----HHHSCSSTTTSCCHHHHHTCGGGTTTCCTT
T ss_pred             HHHHH-----HHHhcCCcccCCCHHHHhcChhhhhccCcc
Confidence            77888     999999999999999999999999876553

>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A*

Probab=99.96  E-value=5.2e-29  Score=255.83  Aligned_cols=153  Identities=12%  Similarity=0.142  Sum_probs=139.9

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-c-------cccEEEEcCCCCeE
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-S-------ETTASVMTRGGSIV  363 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-~-------~~~~~~~d~~G~~~  363 (454)
                      +..+++.|++       |..+.++++|++.++++|++|||++|.||+||+.+++..+ +       +++|+|.|++|+.+
T Consensus         5 ~~~~G~~d~l-------P~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l   77 (423)
T 1htt_A            5 QAIRGMNDYL-------PGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSL   77 (423)
T ss_dssp             CCCTTCCCBC-------HHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEE
T ss_pred             CCCCCccccC-------HHHHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEE
Confidence            4556677777       8889999999999999999999999999999999998543 1       48999999999999


Q ss_pred             eeCCCCCHHHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCC
Q psy7309         364 TLPHDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNY  441 (454)
Q Consensus       364 ~Lr~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~  441 (454)
                      +||||+|+|+||+++++..  ..|+|+||+|+|||+++++.||+|||+|+|+|++|.+ +..+|+|++.++.++|+.+|+
T Consensus        78 ~Lrpd~t~~~aR~~~~~~~~~~~P~rl~~~g~vfR~e~p~~gR~Ref~Q~d~e~~g~~-~~~ad~e~i~~~~~~l~~lgl  156 (423)
T 1htt_A           78 TLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQ-GPDIDAELIMLTARWWRALGI  156 (423)
T ss_dssp             EECSCSHHHHHHHHHHHTCSTTCCEEEEEEEEEECCCCCCSSCCSEEEEEEEEEESCC-SHHHHHHHHHHHHHHHHHHTC
T ss_pred             EeCCCchHHHHHHHHhcccccCCCeEEEEEcCEecCCCCCCCccceeEEeeEEEECCC-CchhhHHHHHHHHHHHHHCCC
Confidence            9999999999999987642  5799999999999999999999999999999999998 888999999999999999999


Q ss_pred             -CCcEEEcCccc
Q psy7309         442 -GNISFAPHPRV  452 (454)
Q Consensus       442 -~~~~i~i~~~~  452 (454)
                       +++.|.+||++
T Consensus       157 ~~~~~i~i~~~g  168 (423)
T 1htt_A          157 SEHVTLELNSIG  168 (423)
T ss_dssp             GGGCEEEEEECC
T ss_pred             CCCcEEEEcCCC
Confidence             88999999975

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.96  E-value=5.4e-30  Score=250.39  Aligned_cols=162  Identities=25%  Similarity=0.409  Sum_probs=121.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++|++.||+|||++||+||||||+|||++.++.+||+|||+|.....                         ..
T Consensus       116 ~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------------------------~~  170 (297)
T 3fxz_A          116 GQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP-------------------------EQ  170 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS-------------------------TT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCC-------------------------cc
Confidence            36889999999999999999999999999999999999999999999875421                         12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       171 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~---------------pf  216 (297)
T 3fxz_A          171 SKRSTMVGTPYWMAPEVVT---RKAYGPKV--DIWSL--------------GIMAIEMIEGEP---------------PY  216 (297)
T ss_dssp             CCBCCCCSCGGGCCHHHHH---CSCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             cccCCccCCcCccChhhhc---CCCCCcHH--HHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            2344568999999999998   67788888  99999              999999776554               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ...........+.......+...           ...++...++|     .+||+.||++|||++|+++||||....
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~dp~~Rps~~ell~h~~~~~~~  277 (297)
T 3fxz_A          217 LNENPLRALYLIATNGTPELQNP-----------EKLSAIFRDFL-----NRCLEMDVEKRGSAKELLQHQFLKIAK  277 (297)
T ss_dssp             TTSCHHHHHHHHHHHCSCCCSCG-----------GGSCHHHHHHH-----HHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             CCCCHHHHHHHHHhCCCCCCCCc-----------cccCHHHHHHH-----HHHccCChhHCcCHHHHhhChhhcccC
Confidence            22222222222111111111111           11236667888     999999999999999999999998643

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.96  E-value=8.5e-30  Score=254.70  Aligned_cols=178  Identities=24%  Similarity=0.280  Sum_probs=128.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++++||+|||+|+...                         ...
T Consensus       110 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~-------------------------~~~  164 (345)
T 3a8x_A          110 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGL-------------------------RPG  164 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSC-------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEecccccccc-------------------------CCC
Confidence            4688999999999999999999999999999999999999999999997431                         112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+++...        ...+.
T Consensus       165 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~pf~~--------~~~~~  217 (345)
T 3a8x_A          165 DTTSTFCGTPNYIAPEILR---GEDYGFSV--DWWAL--------------GVLMFEMMAGRSPFDI--------VGSSD  217 (345)
T ss_dssp             CCBCCCCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSCTTTT--------TTC--
T ss_pred             CcccccCCCccccCccccC---CCCCChHH--hHHHH--------------HHHHHHHHhCCCCcCC--------ccccc
Confidence            2345578999999999998   67788888  99999              9999997766542210        00000


Q ss_pred             -CC-chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh------hhhhcCcc
Q psy7309         162 -TG-SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS------EQNLCQPI  233 (454)
Q Consensus       162 -~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta------~e~l~hp~  233 (454)
                       .. .........+. .....+|...             ++.+.++|     ++||+.||++|||+      +|+++|||
T Consensus       218 ~~~~~~~~~~~~~i~-~~~~~~p~~~-------------s~~~~~li-----~~lL~~dP~~R~~~~~~~~~~~i~~hp~  278 (345)
T 3a8x_A          218 NPDQNTEDYLFQVIL-EKQIRIPRSL-------------SVKAASVL-----KSFLNKDPKERLGCHPQTGFADIQGHPF  278 (345)
T ss_dssp             -----CHHHHHHHHH-HCCCCCCTTS-------------CHHHHHHH-----HHHTCSSTTTSTTCCTTTHHHHHHTSGG
T ss_pred             ccccccHHHHHHHHH-cCCCCCCCCC-------------CHHHHHHH-----HHHhcCCHhHCCCCCCcCCHHHHhcCCc
Confidence             00 11111222222 2233344432             36778888     99999999999996      79999999


Q ss_pred             cccCCCCCCCccCccccccCCCCCC
Q psy7309         234 SLEGSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       234 f~~~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                      |..        ++|+.+.+....|+
T Consensus       279 f~~--------~~w~~~~~~~~~~p  295 (345)
T 3a8x_A          279 FRN--------VDWDMMEQKQVVPP  295 (345)
T ss_dssp             GTT--------CCHHHHHTTCSCCS
T ss_pred             cCC--------CCHHHHHhCCCCCC
Confidence            973        56776666555444

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.96  E-value=9.2e-30  Score=253.64  Aligned_cols=159  Identities=26%  Similarity=0.344  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       108 ~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~--------------------------~  161 (336)
T 3h4j_B          108 DEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTD--------------------------G  161 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTT--------------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccC--------------------------C
Confidence            46889999999999999999999999999999999999999999999975421                          2


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......+||+.|+|||++.   +..| +.++  ||||+              ||++|+|++|+.               |
T Consensus       162 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~~--Diwsl--------------G~il~~ll~g~~---------------P  207 (336)
T 3h4j_B          162 NFLKTSCGSPNYAAPEVIN---GKLYAGPEV--DVWSC--------------GIVLYVMLVGRL---------------P  207 (336)
T ss_dssp             BTTCCCTTSTTTSCGGGSC---CSGGGCHHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             cccccccCCcCcCCHHHHc---CCCCCCCcc--chhHH--------------HHHHHHHHhCCC---------------C
Confidence            2334568999999999997   4555 5677  99999              999999776543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +.+.........+. .....+|..             .++.+.+||     ++||+.||.+|||++|+++||||.....
T Consensus       208 f~~~~~~~~~~~i~-~~~~~~p~~-------------~s~~~~~li-----~~~L~~dP~~Rpt~~eil~hp~~~~~~~  267 (336)
T 3h4j_B          208 FDDEFIPNLFKKVN-SCVYVMPDF-------------LSPGAQSLI-----RRMIVADPMQRITIQEIRRDPWFNVNLP  267 (336)
T ss_dssp             SBCSSSTTCBCCCC-SSCCCCCTT-------------SCHHHHHHH-----HTTSCSSGGGSCCHHHHTTCHHHHTTCC
T ss_pred             CCCccHHHHHHHHH-cCCCCCccc-------------CCHHHHHHH-----HHHcCCChhHCcCHHHHHhChhhccCCc
Confidence            33332222222222 112222222             236778888     9999999999999999999999987654

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.96  E-value=8e-30  Score=252.06  Aligned_cols=168  Identities=30%  Similarity=0.360  Sum_probs=131.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|+...                            
T Consensus       106 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~----------------------------  157 (318)
T 1fot_A          106 PVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP----------------------------  157 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECS----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecC----------------------------
Confidence            3578899999999999999999999999999999999999999999997432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  |+||+              ||++|||++|.+               |+
T Consensus       158 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~---------------pf  203 (318)
T 1fot_A          158 DVTYTLCGTPDYIAPEVVS---TKPYNKSI--DWWSF--------------GILIYEMLAGYT---------------PF  203 (318)
T ss_dssp             SCBCCCCSCTTTCCHHHHT---TCCBCTTH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             CccccccCCccccCHhHhc---CCCCCccc--chhhh--------------HHHHHHHHhCCC---------------CC
Confidence            1223468999999999998   67788888  99999              999999876543               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      .+.+......++... ...+|...             ++.+.++|     .+||+.||++||     |++|+++||||..
T Consensus       204 ~~~~~~~~~~~i~~~-~~~~p~~~-------------~~~~~~li-----~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~  264 (318)
T 1fot_A          204 YDSNTMKTYEKILNA-ELRFPPFF-------------NEDVKDLL-----SRLITRDLSQRLGNLQNGTEDVKNHPWFKE  264 (318)
T ss_dssp             CCSSHHHHHHHHHHC-CCCCCTTS-------------CHHHHHHH-----HHHTCSCTTTCTTSSTTTTHHHHTSGGGSS
T ss_pred             CCCCHHHHHHHHHhC-CCCCCCCC-------------CHHHHHHH-----HHHhccCHHHcCCCcCCCHHHHhcCccccC
Confidence            444444444443322 23344332             26778888     999999999999     9999999999974


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                              ++|+.+......||
T Consensus       265 --------~~~~~~~~~~~~~p  278 (318)
T 1fot_A          265 --------VVWEKLLSRNIETP  278 (318)
T ss_dssp             --------CCHHHHHTTCSCCS
T ss_pred             --------CCHHHHHhCCCCCC
Confidence                    56777766554443

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.96  E-value=8.3e-30  Score=250.70  Aligned_cols=184  Identities=25%  Similarity=0.355  Sum_probs=122.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                         ..
T Consensus       119 ~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~-------------------------~~  173 (311)
T 3niz_A          119 SQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGI-------------------------PV  173 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTS-------------------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCC-------------------------Cc
Confidence            36889999999999999999999999999999999999999999999985431                         12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|+|++|+++     ..+.+......
T Consensus       174 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~ll~g~~pf~~~~~~~~~~~i~~~  235 (311)
T 3niz_A          174 RSYTHEVVTLWYRAPDVLMG--SKKYSTSV--DIWSI--------------GCIFAEMITGKPLFPGVTDDDQLPKIFSI  235 (311)
T ss_dssp             C---CCCCCCTTCCHHHHTT--CCSCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSTTTHHHHHHHH
T ss_pred             ccccCCcccCCcCCHHHhcC--CCCCCchH--HhHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            23445688999999999871  35678888  99999              9998887665531     11122222222


Q ss_pred             cCCCCCCc-hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGS-NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+.|.... .....+..+.......+..    ..|....+. .++++.+||     ++||+.||++|||++|+|+||||+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~li-----~~~L~~dP~~Rpt~~ell~hp~f~  305 (311)
T 3niz_A          236 LGTPNPREWPQVQELPLWKQRTFQVFEK----KPWSSIIPG-FCQEGIDLL-----SNMLCFDPNKRISARDAMNHPYFK  305 (311)
T ss_dssp             HCCCCTTTSGGGTTSHHHHSCCCCCCCC----CCHHHHSTT-CCHHHHHHH-----HHHSCSCTTTSCCHHHHHTSGGGT
T ss_pred             HCCCChHHhhhhhccchhhhcccccccC----CcHHHhCcc-cCHHHHHHH-----HHHcCCChhHCCCHHHHhcCcccc
Confidence            22222211 1111111111111111111    123222222 236677788     999999999999999999999998


Q ss_pred             cCC
Q psy7309         236 EGS  238 (454)
Q Consensus       236 ~~~  238 (454)
                      ...
T Consensus       306 ~~~  308 (311)
T 3niz_A          306 DLD  308 (311)
T ss_dssp             TSC
T ss_pred             cCC
Confidence            643

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.96  E-value=1.3e-29  Score=245.93  Aligned_cols=181  Identities=25%  Similarity=0.371  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       100 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------------------------~~  154 (288)
T 1ob3_A          100 VTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGI-------------------------PV  154 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCc-------------------------cc
Confidence            35789999999999999999999999999999999999999999999986531                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++.     ..+.+...+..
T Consensus       155 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~l~~g~~pf~~~~~~~~~~~~~~~  216 (288)
T 1ob3_A          155 RKYTHEIVTLWYRAPDVLMG--SKKYSTTI--DIWSV--------------GCIFAEMVNGTPLFPGVSEADQLMRIFRI  216 (288)
T ss_dssp             -------CCCTTCCHHHHTT--CCSCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccccccccccccCchheeC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            22345688999999999861  34578888  99999              9999997765541     22333333332


Q ss_pred             cCCCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+.|..... .......+.    ..++.. ....|+..... .++...+||     ++||+.||++|||++|+|+||||.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~-~~~~~~~li-----~~~L~~dP~~Rpt~~e~l~hp~f~  285 (288)
T 1ob3_A          217 LGTPNSKNWPNVTELPKYD----PNFTVY-EPLPWESFLKG-LDESGIDLL-----SKMLKLDPNQRITAKQALEHAYFK  285 (288)
T ss_dssp             HCCCCTTTSTTGGGSTTCC----TTCCCC-CCCCGGGTCCS-CCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSGGGG
T ss_pred             HCCCChhhchhhhcccccc----cccccc-cCccHHHHhhh-cCHHHHHHH-----HHHcCCCcccCCCHHHHhcCcchh
Confidence            232222111 000000000    011110 01223332222 336667888     999999999999999999999998


Q ss_pred             c
Q psy7309         236 E  236 (454)
Q Consensus       236 ~  236 (454)
                      .
T Consensus       286 ~  286 (288)
T 1ob3_A          286 E  286 (288)
T ss_dssp             C
T ss_pred             h
Confidence            5

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.96  E-value=1.2e-29  Score=256.46  Aligned_cols=171  Identities=26%  Similarity=0.386  Sum_probs=133.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+...                         ...
T Consensus       139 ~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~-------------------------~~~  193 (373)
T 2r5t_A          139 PRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENI-------------------------EHN  193 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGB-------------------------CCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccc-------------------------cCC
Confidence            3678899999999999999999999999999999999999999999998532                         112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  |+||+              ||++|||++|.+               |+
T Consensus       194 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~G~~---------------Pf  239 (373)
T 2r5t_A          194 STTSTFCGTPEYLAPEVLH---KQPYDRTV--DWWCL--------------GAVLYEMLYGLP---------------PF  239 (373)
T ss_dssp             CCCCSBSCCCCCCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             CccccccCCccccCHHHhC---CCCCCchh--hhHHH--------------HHHHHHHHcCCC---------------CC
Confidence            2345678999999999998   67788888  99999              999999876543               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh----hhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS----EQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta----~e~l~hp~f~~~  237 (454)
                      .+.+......++... ...++...             ++.+.++|     ++||+.||.+||++    +|+++||||.. 
T Consensus       240 ~~~~~~~~~~~i~~~-~~~~~~~~-------------~~~~~~li-----~~lL~~dp~~R~~~~~~~~~i~~h~~f~~-  299 (373)
T 2r5t_A          240 YSRNTAEMYDNILNK-PLQLKPNI-------------TNSARHLL-----EGLLQKDRTKRLGAKDDFMEIKSHVFFSL-  299 (373)
T ss_dssp             CCSBHHHHHHHHHHS-CCCCCSSS-------------CHHHHHHH-----HHHTCSSGGGSTTTTTTHHHHHTSGGGTT-
T ss_pred             CCCCHHHHHHHHHhc-ccCCCCCC-------------CHHHHHHH-----HHHcccCHHhCCCCCCCHHHHhCCccccC-
Confidence            444444444444322 23333332             26778888     99999999999997    58999999973 


Q ss_pred             CCCCCCccCccccccCCCCCC
Q psy7309         238 SSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       238 ~~~~~~~~~~~~ll~~~~~~~  258 (454)
                             ++|+++......|+
T Consensus       300 -------~~w~~l~~~~~~pp  313 (373)
T 2r5t_A          300 -------INWDDLINKKITPP  313 (373)
T ss_dssp             -------CCHHHHHTTCSCCS
T ss_pred             -------CCHHHHHhCCCCCC
Confidence                   67888876655554

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.96  E-value=6.8e-30  Score=258.89  Aligned_cols=209  Identities=23%  Similarity=0.327  Sum_probs=125.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+............   . ...............
T Consensus       110 ~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~  185 (388)
T 3oz6_A          110 HKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNI---P-LSINENTENFDDDQP  185 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCG---G-GCCC-----------
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccc---c-ccccccccccccccc
Confidence            578899999999999999999999999999999999999999999998553210000000   0 000000000011233


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhhc
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRRE  157 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~~  157 (454)
                      ..+..+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++     .....+..++...
T Consensus       186 ~~~~~~gt~~y~aPE~~~~--~~~~~~~~--DiwSl--------------G~il~ell~g~~pf~~~~~~~~~~~i~~~~  247 (388)
T 3oz6_A          186 ILTDYVATRWYRAPEILLG--STKYTKGI--DMWSL--------------GCILGEILCGKPIFPGSSTMNQLERIIGVI  247 (388)
T ss_dssp             ----CCCGGGGCCHHHHTT--CCCCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHHH
T ss_pred             cccCCcccCCcCCHHHhcC--CCCCCChh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHhc
Confidence            4566799999999999871  35788888  99999              999999777654     2344444444433


Q ss_pred             CCCCCCc-------hhhhhhhhhccCC---CCCCCcccccccccccc-----ccccccchhHHHHHHHHhhhcCCCCCCC
Q psy7309         158 NGPSTGS-------NVQKSLQKFQKSP---PSVYREWRSSFEWSTVR-----NNIKSNFQHFLILIHQQKWCLNHDPSKR  222 (454)
Q Consensus       158 ~~p~~~~-------~~~~~~~~~~~~~---~~~~p~~~~~~~~~~~~-----~~~~~~~~~~li~~~~~~~~L~~dP~~R  222 (454)
                      +.|....       ........+....   ........+  .|....     ....++.+.+||     ++||+.||++|
T Consensus       248 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~dll-----~~~L~~dP~~R  320 (388)
T 3oz6_A          248 DFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFT--KWKNLLLKINPKADCNEEALDLL-----DKLLQFNPNKR  320 (388)
T ss_dssp             CCCCHHHHHTSCCSSHHHHHHHHHHHCC-----CCCCHH--HHHHHHHHHCTTCCCCHHHHHHH-----HHHCCSSGGGS
T ss_pred             CCCCHHHHHhccCHHHHHHHHhCcccccccCCCHHHhCc--chhhhcccccccccCCHHHHHHH-----HHhhccCcccC
Confidence            3332110       0111111111000   111111100  011100     012346677888     99999999999


Q ss_pred             CChhhhhcCcccccCCCC
Q psy7309         223 PSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       223 pta~e~l~hp~f~~~~~~  240 (454)
                      ||++|+|+||||.....+
T Consensus       321 ~t~~e~l~Hp~~~~~~~~  338 (388)
T 3oz6_A          321 ISANDALKHPFVSIFHNP  338 (388)
T ss_dssp             CCHHHHTTSTTTTTTCCG
T ss_pred             CCHHHHhCCHHHHHhcCC
Confidence            999999999999875543

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.95  E-value=1.4e-29  Score=253.72  Aligned_cols=168  Identities=22%  Similarity=0.228  Sum_probs=131.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+...                            
T Consensus       141 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~----------------------------  192 (350)
T 1rdq_E          141 PHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK----------------------------  192 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECS----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceecc----------------------------
Confidence            3678999999999999999999999999999999999999999999997542                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+               |+
T Consensus       193 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~---------------Pf  238 (350)
T 1rdq_E          193 GRTWTLCGTPEALAPEIIL---SKGYNKAV--DWWAL--------------GVLIYEMAAGYP---------------PF  238 (350)
T ss_dssp             SCBCCCEECGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             CCcccccCCccccCHHHhc---CCCCCCcC--CEecc--------------cHhHhHHhhCCC---------------CC
Confidence            1233568999999999998   66788888  99999              999999776543               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                      .+.+......++... ...+|...             ++.+.++|     ++||+.||++||+     ++|+++||||..
T Consensus       239 ~~~~~~~~~~~i~~~-~~~~p~~~-------------~~~~~~li-----~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~  299 (350)
T 1rdq_E          239 FADQPIQIYEKIVSG-KVRFPSHF-------------SSDLKDLL-----RNLLQVDLTKRFGNLKNGVNDIKNHKWFAT  299 (350)
T ss_dssp             CCSSHHHHHHHHHHC-CCCCCTTC-------------CHHHHHHH-----HHHSCSCTTTCTTSSTTTTHHHHTSGGGTT
T ss_pred             CCCCHHHHHHHHHcC-CCCCCCCC-------------CHHHHHHH-----HHHhhcCHHhccCCccCCHHHHHhCcCcCC
Confidence            444444444444322 33444432             26777888     9999999999998     999999999973


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                              ++|+.+.+....||
T Consensus       300 --------~~w~~~~~~~~~~p  313 (350)
T 1rdq_E          300 --------TDWIAIYQRKVEAP  313 (350)
T ss_dssp             --------CCHHHHHTTCSCCS
T ss_pred             --------CCHHHHhhccCCCC
Confidence                    56666665544443

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.95  E-value=1.7e-29  Score=256.96  Aligned_cols=185  Identities=25%  Similarity=0.354  Sum_probs=131.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++ .++.+||+|||+|+....                          
T Consensus       141 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~--------------------------  194 (394)
T 4e7w_A          141 LLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIA--------------------------  194 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccC--------------------------
Confidence            35789999999999999999999999999999999 789999999999975421                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIR  155 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~  155 (454)
                      .......+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++     ...+.+..++.
T Consensus       195 ~~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--DiwSl--------------G~il~ell~g~~pf~~~~~~~~l~~i~~  256 (394)
T 4e7w_A          195 GEPNVSYICSRYYRAPELIFG--ATNYTTNI--DIWST--------------GCVMAELMQGQPLFPGESGIDQLVEIIK  256 (394)
T ss_dssp             TCCCCSSCSCGGGCCHHHHTT--CSSCCTHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCCcccccCcCccCHHHHcC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHH
Confidence            223445688999999999861  34588888  99999              999999776554     23344444444


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ..+.|... ........+.   ...+|... ...|........++++.+||     .+||+.||++|||+.|+++||||.
T Consensus       257 ~~g~p~~~-~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~~li-----~~~L~~dP~~R~t~~e~l~hp~f~  326 (394)
T 4e7w_A          257 VLGTPSRE-QIKTMNPNYM---EHKFPQIR-PHPFSKVFRPRTPPDAIDLI-----SRLLEYTPSARLTAIEALCHPFFD  326 (394)
T ss_dssp             HHCCCCHH-HHHHHCGGGS---SSCCCCCC-CCCHHHHSCTTCCHHHHHHH-----HHHCCSSGGGSCCHHHHHTSGGGS
T ss_pred             HhCCCCHH-HHHhhChhhh---hhcccccc-CCcHHHhccccCCHHHHHHH-----HHHhCCChhhCCCHHHHhcChhhh
Confidence            44443221 1111111111   11222211 12344434444557788888     999999999999999999999999


Q ss_pred             cCCCC
Q psy7309         236 EGSSS  240 (454)
Q Consensus       236 ~~~~~  240 (454)
                      +....
T Consensus       327 ~~~~~  331 (394)
T 4e7w_A          327 ELRTG  331 (394)
T ss_dssp             TTTSS
T ss_pred             hhccc
Confidence            76543

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.95  E-value=1.7e-29  Score=273.86  Aligned_cols=172  Identities=26%  Similarity=0.329  Sum_probs=137.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++|||||||||+|||++.++++||+|||+|+...                         ...
T Consensus       442 ~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~-------------------------~~~  496 (674)
T 3pfq_A          442 PHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENI-------------------------WDG  496 (674)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECC-------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccc-------------------------cCC
Confidence            4688999999999999999999999999999999999999999999997432                         112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       497 ~~~~~~~GT~~Y~APE~l~---~~~~~~~~--DvwSl--------------GvilyelltG~~---------------Pf  542 (674)
T 3pfq_A          497 VTTKTFCGTPDYIAPEIIA---YQPYGKSV--DWWAF--------------GVLLYEMLAGQA---------------PF  542 (674)
T ss_dssp             CCBCCCCSCSSSCCHHHHT---CCCBSTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             cccccccCCCcccCHhhhc---CCCCCccc--eEech--------------HHHHHHHHcCCC---------------CC
Confidence            3345678999999999998   67899999  99999              999999876654               45


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCCh-----hhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSS-----EQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta-----~e~l~hp~f~~  236 (454)
                      .+.+....+..+.. ....+|...             ++++.+||     ++||+.||++||++     +|+++||||..
T Consensus       543 ~~~~~~~~~~~i~~-~~~~~p~~~-------------s~~~~~li-----~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~  603 (674)
T 3pfq_A          543 EGEDEDELFQSIME-HNVAYPKSM-------------SKEAVAIC-----KGLMTKHPGKRLGCGPEGERDIKEHAFFRY  603 (674)
T ss_dssp             CCSSHHHHHHHHHS-SCCCCCTTS-------------CHHHHHHH-----HHHSCSSSTTCTTCSTTHHHHHHSSGGGSS
T ss_pred             CCCCHHHHHHHHHh-CCCCCCccC-------------CHHHHHHH-----HHHccCCHHHCCCCCCCcHHHHhcCccccC
Confidence            55444445555443 334455442             37788888     99999999999998     99999999974


Q ss_pred             CCCCCCCccCccccccCCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPPP  259 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~~  259 (454)
                              ++|+.+......||.
T Consensus       604 --------i~w~~l~~~~~~pp~  618 (674)
T 3pfq_A          604 --------IDWEKLERKEIQPPY  618 (674)
T ss_dssp             --------CCHHHHTTTCSCCSC
T ss_pred             --------CCHHHHHhCCCCCCC
Confidence                    678888776666553

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.95  E-value=1.9e-29  Score=255.78  Aligned_cols=174  Identities=27%  Similarity=0.349  Sum_probs=131.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|+...                          ..
T Consensus       115 ~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~--------------------------~~  168 (384)
T 4fr4_A          115 ETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLP--------------------------RE  168 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC--------------------------TT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeecc--------------------------CC
Confidence            4688999999999999999999999999999999999999999999997542                          12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++....+..|+.++  ||||+              ||++|||++|++               |+
T Consensus       169 ~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~--DiwSl--------------G~il~elltG~~---------------Pf  217 (384)
T 4fr4_A          169 TQITTMAGTKPYMAPEMFSSRKGAGYSFAV--DWWSL--------------GVTAYELLRGRR---------------PY  217 (384)
T ss_dssp             CCBCCCCSCGGGCCGGGTCCCSSCCBCTTH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             CceeccCCCccccCCeeeccCCCCCCCccc--eeech--------------HHHHHHHHhCCC---------------CC
Confidence            334567899999999999743345688888  99999              999999776553               22


Q ss_pred             CC---chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-hhhhhcCcccccC
Q psy7309         162 TG---SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-SEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-a~e~l~hp~f~~~  237 (454)
                      ..   .........+. .....+|...             ++.+.++|     ++||+.||.+||+ ++++++||||.. 
T Consensus       218 ~~~~~~~~~~~~~~~~-~~~~~~p~~~-------------s~~~~~li-----~~lL~~dP~~R~s~~~~l~~hp~f~~-  277 (384)
T 4fr4_A          218 HIRSSTSSKEIVHTFE-TTVVTYPSAW-------------SQEMVSLL-----KKLLEPNPDQRFSQLSDVQNFPYMND-  277 (384)
T ss_dssp             CCCTTSCHHHHHHHHH-HCCCCCCTTS-------------CHHHHHHH-----HHHSCSSGGGSCCSHHHHHTSGGGTT-
T ss_pred             CCCCCccHHHHHHHHh-hcccCCCCcC-------------CHHHHHHH-----HHHhcCCHhHhcccHHHHHcChhhhc-
Confidence            21   11122222222 2223334332             26677888     9999999999999 899999999974 


Q ss_pred             CCCCCCccCccccccCCCCCCC
Q psy7309         238 SSSGLSVLGSEQLLTCDHIPPP  259 (454)
Q Consensus       238 ~~~~~~~~~~~~ll~~~~~~~~  259 (454)
                             ++|+.+.+....|+.
T Consensus       278 -------~~w~~~~~~~~~p~~  292 (384)
T 4fr4_A          278 -------INWDAVFQKRLIPGF  292 (384)
T ss_dssp             -------CCHHHHHTTCSCCCC
T ss_pred             -------CCHHHHHhCCCCCCC
Confidence                   567777766655553

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.95  E-value=9.6e-30  Score=261.71  Aligned_cols=186  Identities=26%  Similarity=0.322  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC--eEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH--VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~--vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.  +||+|||+|+...                          
T Consensus       200 ~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~--------------------------  253 (429)
T 3kvw_A          200 PLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEH--------------------------  253 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETT--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecC--------------------------
Confidence            468899999999999999999999999999999999887  9999999986432                          


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHh
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNI  154 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i  154 (454)
                        ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+     ...+.+...+
T Consensus       254 --~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~elltG~~pf~~~~~~~~l~~i~  312 (429)
T 3kvw_A          254 --QRVYTYIQSRFYRAPEVIL---GARYGMPI--DMWSL--------------GCILAELLTGYPLLPGEDEGDQLACMI  312 (429)
T ss_dssp             --CCCCSSCSCGGGCCHHHHH---TBCCCTHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             --CcccccCCCCCccChHHHh---CCCCCchH--HHHhH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence              2234568999999999998   67788888  99999              999999777654     2233333333


Q ss_pred             hhcCCCCCCchh-hhhhhhhccC-CCCCC-----------------------CccccccccccccccccccchhHHHHHH
Q psy7309         155 RRENGPSTGSNV-QKSLQKFQKS-PPSVY-----------------------REWRSSFEWSTVRNNIKSNFQHFLILIH  209 (454)
Q Consensus       155 ~~~~~p~~~~~~-~~~~~~~~~~-~~~~~-----------------------p~~~~~~~~~~~~~~~~~~~~~~li~~~  209 (454)
                      ...+.|...... ......+... ..+.+                       ......-.|........++.+.+||   
T Consensus       313 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~dli---  389 (429)
T 3kvw_A          313 ELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLNGGRSRRGKLRGPPESREWGNALKGCDDPLFLDFL---  389 (429)
T ss_dssp             HHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC--CEECCEECTTCCEECSTTCSCHHHHTTTCCCHHHHHHH---
T ss_pred             HHcCCCCHHHHHhhhhhhhccCCCCCcccccccccccccccccccccchhhccCCccchhhHhhccccchHHHHHHH---
Confidence            333333221100 0001111100 00000                       0000011233333334456677777   


Q ss_pred             HHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         210 QQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       210 ~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                        ++||++||++||||+|+|+||||.....
T Consensus       390 --~~~L~~dP~~Rpta~e~L~Hpw~~~~~~  417 (429)
T 3kvw_A          390 --KQCLEWDPAVRMTPGQALRHPWLRRRLP  417 (429)
T ss_dssp             --HHHTCSSTTTSCCHHHHHTSTTTC----
T ss_pred             --HHHCCCChhhCCCHHHHhCChhhccCCC
Confidence              9999999999999999999999996543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=3.7e-29  Score=252.03  Aligned_cols=177  Identities=27%  Similarity=0.378  Sum_probs=126.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+...                            
T Consensus       128 ~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~----------------------------  179 (367)
T 1cm8_A          128 DRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD----------------------------  179 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccccc----------------------------
Confidence            3678999999999999999999999999999999999999999999997432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ...+..+||+.|+|||++..  ...|+.++  ||||+              ||+++||++|++     ...+.+..++..
T Consensus       180 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~ell~g~~pf~~~~~~~~l~~i~~~  241 (367)
T 1cm8_A          180 SEMTGYVVTRWYRAPEVILN--WMRYTQTV--DIWSV--------------GCIMAEMITGKTLFKGSDHLDQLKEIMKV  241 (367)
T ss_dssp             SSCCSSCSCGGGCCTHHHHT--TTCCCTTH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             cccCcCcCCCCcCCHHHHhC--CCCCChhh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            12345689999999999871  25788888  99999              999999777654     233444444444


Q ss_pred             cCCCCCCc-------hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTGS-------NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+.|....       ........+.......         |..+.. ..++.+.+||     .+||+.||++|||++|+|
T Consensus       242 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~-~~~~~~~~ll-----~~mL~~dP~~R~t~~e~l  306 (367)
T 1cm8_A          242 TGTPPAEFVQRLQSDEAKNYMKGLPELEKKD---------FASILT-NASPLAVNLL-----EKMLVLDAEQRVTAGEAL  306 (367)
T ss_dssp             HCCCCHHHHHTCSCHHHHHHHHHSCCCCCCC---------GGGTCT-TCCHHHHHHH-----HHHSCSSTTTSCCHHHHH
T ss_pred             cCCCCHHHHHHhhhHHHHHHHHhCCCCCCCC---------HHHHCC-CCCHHHHHHH-----HHHccCChhHCCCHHHHh
Confidence            34432210       0111111221111111         222211 2236777888     999999999999999999


Q ss_pred             cCcccccCCC
Q psy7309         230 CQPISLEGSS  239 (454)
Q Consensus       230 ~hp~f~~~~~  239 (454)
                      +||||.....
T Consensus       307 ~hp~f~~~~~  316 (367)
T 1cm8_A          307 AHPYFESLHD  316 (367)
T ss_dssp             HSGGGTTTC-
T ss_pred             cChHHHhhcC
Confidence            9999987554

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.95  E-value=1.5e-29  Score=254.59  Aligned_cols=160  Identities=24%  Similarity=0.363  Sum_probs=124.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC----CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED----HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~----~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.+++||+.||.|||++||+||||||+|||++.++    .+||+|||++.....                       
T Consensus       115 ~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~-----------------------  171 (361)
T 2yab_A          115 EEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED-----------------------  171 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCT-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCC-----------------------
Confidence            46889999999999999999999999999999998877    799999999975421                       


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                         .......+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|.+             
T Consensus       172 ---~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------Gvil~~ll~g~~-------------  216 (361)
T 2yab_A          172 ---GVEFKNIFGTPEFVAPEIVN---YEPLGLEA--DMWSI--------------GVITYILLSGAS-------------  216 (361)
T ss_dssp             ---TCCCCCCCSCGGGCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSCC-------------
T ss_pred             ---CCccccCCCCccEECchHHc---CCCCCccc--cHHHH--------------HHHHHHHHhCCC-------------
Confidence               22344568999999999998   66788888  99999              999999776543             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                        |+.+.+....+..+... ...++...    |     ...++.+.+||     ++||..||++|||++|+|+||||..
T Consensus       217 --Pf~~~~~~~~~~~i~~~-~~~~~~~~----~-----~~~s~~~~~li-----~~~L~~dP~~R~t~~e~l~hp~~~~  278 (361)
T 2yab_A          217 --PFLGDTKQETLANITAV-SYDFDEEF----F-----SQTSELAKDFI-----RKLLVKETRKRLTIQEALRHPWITP  278 (361)
T ss_dssp             --SSCCSSHHHHHHHHHTT-CCCCCHHH----H-----TTSCHHHHHHH-----HHHSCSSTTTSCCHHHHHTSTTTSC
T ss_pred             --CCCCCCHHHHHHHHHhc-CCCCCchh----c-----cCCCHHHHHHH-----HHHCCCChhHCcCHHHHhcCcCcCC
Confidence              44444444444444422 22232211    1     12346778888     9999999999999999999999974

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.95  E-value=1.5e-30  Score=255.75  Aligned_cols=174  Identities=19%  Similarity=0.177  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHc--------CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ--------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID   73 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~--------giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~   73 (454)
                      +.+.+++.|++.||+|||++        |||||||||+|||++.++++||+|||+|+.......                
T Consensus       100 ~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~----------------  163 (303)
T 3hmm_A          100 EGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATD----------------  163 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCC----------------
Confidence            46789999999999999987        999999999999999999999999999985532100                


Q ss_pred             CCCcccCCCCCcCcccccceecccccccc---ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHH
Q psy7309          74 STAFYSHDTSHTGQVGTALYAAPELDSHG---VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEEL  150 (454)
Q Consensus        74 ~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~---~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l  150 (454)
                           .........+||+.|||||++...   ....|+.++  ||||+              ||++|||+++.+..... 
T Consensus       164 -----~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~--DVwS~--------------Gvvl~El~tg~~~~~~~-  221 (303)
T 3hmm_A          164 -----TIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRA--DIYAM--------------GLVFWEIARRCSIGGIH-  221 (303)
T ss_dssp             -----EESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHH--HHHHH--------------HHHHHHHHHTBCBTTBC-
T ss_pred             -----ceeeecccccccccccCHHHhcccccccCCccChhH--hhhhH--------------HHHHHHHHHCCCCCCcc-
Confidence                 112234457899999999998622   123577788  99999              99999987765421000 


Q ss_pred             HHHhhhcCCCCCCc-----hhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC
Q psy7309         151 KHNIRRENGPSTGS-----NVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS  224 (454)
Q Consensus       151 ~~~i~~~~~p~~~~-----~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt  224 (454)
                          .....|+...     ........+. ....+.+|.....        ........+|+     .+||+.||++|||
T Consensus       222 ----~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~~p~~~~~--------~~~~~~l~~li-----~~cl~~dP~~RPt  284 (303)
T 3hmm_A          222 ----EDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNRWQS--------CEALRVMAKIM-----RECWYANGAARLT  284 (303)
T ss_dssp             ----CCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGGS--------SHHHHHHHHHH-----HTTCCSSGGGSCC
T ss_pred             ----ccccccchhcccccchHHHHHHHHhcccCCCCCCccccc--------hHHHHHHHHHH-----HHHcccCHhHCcC
Confidence                0011122111     1112222221 1222333332110        00112344566     9999999999999


Q ss_pred             hhhhhc
Q psy7309         225 SEQNLC  230 (454)
Q Consensus       225 a~e~l~  230 (454)
                      +.|+++
T Consensus       285 ~~ei~~  290 (303)
T 3hmm_A          285 ALRIKK  290 (303)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.95  E-value=2e-29  Score=260.41  Aligned_cols=171  Identities=23%  Similarity=0.319  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||+|||+ +||+||||||+|||++.++.+||+|||+|+...                         ..
T Consensus       248 ~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~-------------------------~~  302 (446)
T 4ejn_A          248 DRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGI-------------------------KD  302 (446)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTC-------------------------C-
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceecc-------------------------CC
Confidence            4678999999999999998 999999999999999999999999999997432                         11


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |
T Consensus       303 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~---------------P  348 (446)
T 4ejn_A          303 GATMKTFCGTPEYLAPEVLE---DNDYGRAV--DWWGL--------------GVVMYEMMCGRL---------------P  348 (446)
T ss_dssp             ----CCSSSCGGGCCHHHHH---TSCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             CcccccccCCccccCHhhcC---CCCCCCcc--chhhh--------------HHHHHHHhhCCC---------------C
Confidence            22345578999999999997   67788888  99999              999999776553               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCcccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISL  235 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~  235 (454)
                      +...........+.. ....+|...             ++.+.+||     .+||+.||++||     |++|+++||||.
T Consensus       349 f~~~~~~~~~~~i~~-~~~~~p~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~t~~ell~hp~f~  409 (446)
T 4ejn_A          349 FYNQDHEKLFELILM-EEIRFPRTL-------------GPEAKSLL-----SGLLKKDPKQRLGGGSEDAKEIMQHRFFA  409 (446)
T ss_dssp             SCCSSHHHHHHHHHH-CCCCCCTTS-------------CHHHHHHH-----HHHTCSSTTTSTTCSTTTHHHHHTSGGGT
T ss_pred             CCCCCHHHHHHHHHh-CCCCCCccC-------------CHHHHHHH-----HHHcccCHHHhCCCCCCCHHHHHhCcccc
Confidence            333333333333332 223344332             26777888     999999999999     999999999998


Q ss_pred             cCCCCCCCccCccccccCCCCCC
Q psy7309         236 EGSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       236 ~~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                      .        ++|+.+.+....|+
T Consensus       410 ~--------~~~~~~~~~~~~pp  424 (446)
T 4ejn_A          410 G--------IVWQHVYEKKLSPP  424 (446)
T ss_dssp             T--------CCHHHHHTTCSCCS
T ss_pred             C--------CCHHHHhhCcCCCC
Confidence            5        45666665544443

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.95  E-value=3e-29  Score=257.33  Aligned_cols=183  Identities=21%  Similarity=0.316  Sum_probs=130.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.+ +.+||+|||+|+....                          .
T Consensus       157 ~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~--------------------------~  210 (420)
T 1j1b_A          157 YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVR--------------------------G  210 (420)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCT--------------------------T
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhccc--------------------------C
Confidence            578999999999999999999999999999999965 5689999999985421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++     ...+.+..++..
T Consensus       211 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--DiwSl--------------G~il~ell~G~~pf~~~~~~~~l~~i~~~  272 (420)
T 1j1b_A          211 EPNVSYICSRYYRAPELIFG--ATDYTSSI--DVWSA--------------GCVLAELLLGQPIFPGDSGVDQLVEIIKV  272 (420)
T ss_dssp             CCCCSCCSCTTSCCHHHHTT--CSSCCTHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             CCceeeeeCCCcCCHHHHcC--CCCCCchh--hhHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            22345689999999999871  34688888  99999              999999777654     234455555544


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.|... ......   .......+|... ...|........++.+.+||     .+||+.||++|||+.|+++||||..
T Consensus       273 lg~p~~~-~~~~~~---~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~Li-----~~~L~~dP~~R~t~~e~l~hp~f~~  342 (420)
T 1j1b_A          273 LGTPTRE-QIREMN---PNYTEFKFPQIK-AHPWTKVFRPRTPPEAIALC-----SRLLEYTPTARLTPLEACAHSFFDE  342 (420)
T ss_dssp             HCSCCHH-HHHHHC---SCCCCCCCCCCC-CCCHHHHSCTTSCHHHHHHH-----HHHSCSSGGGSCCHHHHHTSGGGGG
T ss_pred             hCCCCHH-HHHhhC---hhhhhhccCccC-CCCHHHhcCCCCCHHHHHHH-----HHhccCChhHCCCHHHHhCCHhhcc
Confidence            4433211 111110   011122233221 13455544445567888888     9999999999999999999999986


Q ss_pred             CCC
Q psy7309         237 GSS  239 (454)
Q Consensus       237 ~~~  239 (454)
                      ...
T Consensus       343 ~~~  345 (420)
T 1j1b_A          343 LRD  345 (420)
T ss_dssp             GGC
T ss_pred             ccc
Confidence            543

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.95  E-value=2.2e-29  Score=245.42  Aligned_cols=161  Identities=23%  Similarity=0.312  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       137 ~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------------------------~~  191 (298)
T 2zv2_A          137 DQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKG-------------------------SD  191 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECSS-------------------------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCCEEEecCCCcccccc-------------------------cc
Confidence            46889999999999999999999999999999999999999999999975421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.......++.++  ||||+              ||++|+|++|+.               |+
T Consensus       192 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~--Di~sl--------------G~~l~~l~~g~~---------------pf  240 (298)
T 2zv2_A          192 ALLSNTVGTPAFMAPESLSETRKIFSGKAL--DVWAM--------------GVTLYCFVFGQC---------------PF  240 (298)
T ss_dssp             CEECCCCSCGGGCCGGGCCTTCCCEESHHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             ccccCCcCCccccChhhhccCCCCCCCchh--hhHhH--------------HHHHHHHHHCCC---------------CC
Confidence            123446899999999998732222246677  99999              999999766543               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ...........+.. ....++..           ...++...++|     .+||+.||++|||++|+++||||.
T Consensus       241 ~~~~~~~~~~~~~~-~~~~~~~~-----------~~~~~~l~~li-----~~~l~~dp~~R~s~~e~l~hp~~~  297 (298)
T 2zv2_A          241 MDERIMCLHSKIKS-QALEFPDQ-----------PDIAEDLKDLI-----TRMLDKNPESRIVVPEIKLHPWVT  297 (298)
T ss_dssp             CCSSHHHHHHHHHH-CCCCCCSS-----------SCCCHHHHHHH-----HHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred             CCccHHHHHHHHhc-ccCCCCCc-----------cccCHHHHHHH-----HHHhhcChhhCCCHHHHhcCcccc
Confidence            33222222222221 11222221           11236677888     999999999999999999999996

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.95  E-value=3.5e-29  Score=258.62  Aligned_cols=162  Identities=26%  Similarity=0.400  Sum_probs=123.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.   ++.+||+|||+|.....                        
T Consensus       110 ~~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~------------------------  165 (444)
T 3soa_A          110 ADASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEG------------------------  165 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCT------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecC------------------------
Confidence            367899999999999999999999999999999984   57899999999975421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                       ........+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|.+              
T Consensus       166 -~~~~~~~~~gt~~Y~APE~l~---~~~~~~~~--DIwSl--------------Gvilyell~G~~--------------  211 (444)
T 3soa_A          166 -EQQAWFGFAGTPGYLSPEVLR---KDPYGKPV--DLWAC--------------GVILYILLVGYP--------------  211 (444)
T ss_dssp             -TCCBCCCSCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             -CCceeecccCCcccCCHHHhc---CCCCCCcc--ccHHH--------------HHHHHHHHhCCC--------------
Confidence             122334578999999999998   66788888  99999              999999876553              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+.+.........+.... ..++..    .|.     ..++.+.+||     .+||+.||++|||+.|+|+||||...
T Consensus       212 -Pf~~~~~~~~~~~i~~~~-~~~~~~----~~~-----~~s~~~~~li-----~~~L~~dP~~Rpta~e~L~hp~~~~~  274 (444)
T 3soa_A          212 -PFWDEDQHRLYQQIKAGA-YDFPSP----EWD-----TVTPEAKDLI-----NKMLTINPSKRITAAEALKHPWISHR  274 (444)
T ss_dssp             -SCCCSSHHHHHHHHHHTC-CCCCTT----TTT-----TSCHHHHHHH-----HHHSCSSTTTSCCHHHHHHSCTTHHH
T ss_pred             -CCCCccHHHHHHHHHhCC-CCCCcc----ccc-----cCCHHHHHHH-----HHHcCCChhHCCCHHHHhcCccccCC
Confidence             444444444444443222 222221    121     2347778888     99999999999999999999999753

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.95  E-value=3e-29  Score=248.56  Aligned_cols=171  Identities=31%  Similarity=0.448  Sum_probs=126.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....                         ..
T Consensus       121 ~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~-------------------------~~  175 (327)
T 3a62_A          121 DTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIH-------------------------DG  175 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCccccccc-------------------------CC
Confidence            35788999999999999999999999999999999999999999999875321                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              |+++|||++|+.               |+
T Consensus       176 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~g~~---------------pf  221 (327)
T 3a62_A          176 TVTHTFCGTIEYMAPEILM---RSGHNRAV--DWWSL--------------GALMYDMLTGAP---------------PF  221 (327)
T ss_dssp             ---CTTSSCCTTSCHHHHT---TSCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------SC
T ss_pred             ccccccCCCcCccCHhhCc---CCCCCCcc--cchhH--------------HHHHHHHHHCCC---------------CC
Confidence            2234568999999999998   56788888  99999              999999776543               34


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      .+.+.......+... ...+|...             ++.+.++|     .+||+.||++||     +++|+++||||..
T Consensus       222 ~~~~~~~~~~~i~~~-~~~~p~~~-------------~~~~~~li-----~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~  282 (327)
T 3a62_A          222 TGENRKKTIDKILKC-KLNLPPYL-------------TQEARDLL-----KKLLKRNAASRLGAGPGDAGEVQAHPFFRH  282 (327)
T ss_dssp             CCSSHHHHHHHHHHT-CCCCCTTS-------------CHHHHHHH-----HHHSCSCGGGSTTSSTTTHHHHHHSGGGSS
T ss_pred             CCCCHHHHHHHHHhC-CCCCCCCC-------------CHHHHHHH-----HHHHhcCHhhccCCCCCCHHHHHcCCcccC
Confidence            443333333333322 22333332             26677888     999999999999     7889999999973


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                              ++|+++......|+
T Consensus       283 --------~~~~~~~~~~~~~p  296 (327)
T 3a62_A          283 --------INWEELLARKVEPP  296 (327)
T ss_dssp             --------CCHHHHHTTCSCCS
T ss_pred             --------CCHHHHhhccCCCC
Confidence                    56667766555444

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.95  E-value=5.8e-29  Score=245.22  Aligned_cols=190  Identities=23%  Similarity=0.272  Sum_probs=123.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                         ..
T Consensus       108 ~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~-------------------------~~  162 (317)
T 2pmi_A          108 NLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGI-------------------------PV  162 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTS-------------------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCC-------------------------Cc
Confidence            35788999999999999999999999999999999999999999999975431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++.     ....+...+..
T Consensus       163 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~el~~g~~pf~~~~~~~~~~~i~~~  224 (317)
T 2pmi_A          163 NTFSSEVVTLWYRAPDVLMG--SRTYSTSI--DIWSC--------------GCILAEMITGKPLFPGTNDEEQLKLIFDI  224 (317)
T ss_dssp             CCCCCCCSCCTTCCHHHHTT--CCCCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             ccCCCCcccccccCchHhhC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            23345688999999999871  24678888  99999              9999997765541     12222222222


Q ss_pred             cCCCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+.|..... .......+........+..... .+........++.+.+||     .+||+.||++|||++|+|+||||.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~li-----~~~L~~dP~~Rpt~~e~l~hp~f~  298 (317)
T 2pmi_A          225 MGTPNESLWPSVTKLPKYNPNIQQRPPRDLRQ-VLQPHTKEPLDGNLMDFL-----HGLLQLNPDMRLSAKQALHHPWFA  298 (317)
T ss_dssp             HCSCCTTTCGGGGGCTTCCTTCCCCCCCCSHH-HHGGGCSSCCCHHHHHHH-----HHHSCSSGGGSCCHHHHTTSGGGG
T ss_pred             hCCCChhHhhhhhhhhhcccccccccchhHHH-hhcccccccCCHHHHHHH-----HHHCCCCcccCCCHHHHhCChhhh
Confidence            222221111 0000000000000000000000 000001122346677777     999999999999999999999999


Q ss_pred             cCCCC
Q psy7309         236 EGSSS  240 (454)
Q Consensus       236 ~~~~~  240 (454)
                      +....
T Consensus       299 ~~~~~  303 (317)
T 2pmi_A          299 EYYHH  303 (317)
T ss_dssp             GGCC-
T ss_pred             cccch
Confidence            65543

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.95  E-value=3.2e-29  Score=252.66  Aligned_cols=178  Identities=30%  Similarity=0.418  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                           
T Consensus       132 ~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~---------------------------  184 (367)
T 2fst_X          132 DHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTAD---------------------------  184 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccccccccc---------------------------
Confidence            36889999999999999999999999999999999999999999999985421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                       ..+..+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++     ...+.+..++..
T Consensus       185 -~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~ell~g~~pf~~~~~~~~l~~i~~~  245 (367)
T 2fst_X          185 -EMTGYVATRWYRAPEIMLN--WMHYNQTV--DIWSV--------------GCIMAELLTGRTLFPGTDHIDQLKLILRL  245 (367)
T ss_dssp             -------CCCTTCCHHHHTT--CCSCCTTH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             -cCCCcCcCcCccChHHHcC--CcCCCchh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence             2345689999999999872  25788888  99999              999999777654     233444444443


Q ss_pred             cCCCCCC-------chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTG-------SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+.|...       .........+.....         ..|...... .++.+.+||     .+||+.||++|||++|+|
T Consensus       246 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~dLl-----~~mL~~dP~~R~t~~e~L  310 (367)
T 2fst_X          246 VGTPGAELLKKISSESARNYIQSLTQMPK---------MNFANVFIG-ANPLAVDLL-----EKMLVLDSDKRITAAQAL  310 (367)
T ss_dssp             HCSCCHHHHTTCCCHHHHHHHHTSCCCCC---------CCHHHHTTT-CCHHHHHHH-----HHHSCSSGGGSCCHHHHH
T ss_pred             hCCCCHHHHHHhhhHHHHHHHhccCCCCC---------CCHHHHCCC-CCHHHHHHH-----HHhCCCCcccCcCHHHHh
Confidence            3443211       011111111111111         122222212 236677888     999999999999999999


Q ss_pred             cCcccccCCCC
Q psy7309         230 CQPISLEGSSS  240 (454)
Q Consensus       230 ~hp~f~~~~~~  240 (454)
                      +||||.....+
T Consensus       311 ~hp~~~~~~~~  321 (367)
T 2fst_X          311 AHAYFAQYHDP  321 (367)
T ss_dssp             TSGGGTTTCCG
T ss_pred             cChhhhhccCC
Confidence            99999976543

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.95  E-value=5.3e-29  Score=253.88  Aligned_cols=189  Identities=25%  Similarity=0.340  Sum_probs=119.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE----ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI----DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl----~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .++.+++||+.||+|||++||+||||||+|||+    +.++.+||+|||+|+......                      
T Consensus       129 ~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~----------------------  186 (405)
T 3rgf_A          129 MVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPL----------------------  186 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCC----------------------
Confidence            588999999999999999999999999999999    677899999999998653210                      


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh------------
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT------------  146 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~------------  146 (454)
                      .........+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++..            
T Consensus       187 ~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--DiwSl--------------G~il~ell~g~~pf~~~~~~~~~~~~  248 (405)
T 3rgf_A          187 KPLADLDPVVVTFWYRAPELLLG--ARHYTKAI--DIWAI--------------GCIFAELLTSEPIFHCRQEDIKTSNP  248 (405)
T ss_dssp             ----------CCCTTCCHHHHTT--CCSCCHHH--HHHHH--------------HHHHHHHHHSSCTTCCCC------CC
T ss_pred             cccccCCCceecCcccCchhhcC--CCcccchh--hhHHH--------------HHHHHHHHhCCCCCCCcccccccccc
Confidence            11123455789999999999871  24588888  99999              99888877665422            


Q ss_pred             --HHHHHHHhhhcCCCCCCchhh--------hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcC
Q psy7309         147 --LEELKHNIRRENGPSTGSNVQ--------KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLN  216 (454)
Q Consensus       147 --~~~l~~~i~~~~~p~~~~~~~--------~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~  216 (454)
                        .+.+..++...+.|.......        .....+..   ..++.. ....|........++.+.+||     ++||+
T Consensus       249 ~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~Ll-----~~~L~  319 (405)
T 3rgf_A          249 YHHDQLDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRR---NTYTNC-SLIKYMEKHKVKPDSKAFHLL-----QKLLT  319 (405)
T ss_dssp             CCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHHHHHHCCG---GGGTTC-CHHHHHHTTTCCTTSHHHHHH-----HHHSC
T ss_pred             chHHHHHHHHHhhCCCChhhcchhhcCcchhhhhhhccc---cCCCcc-hhhhhHhhcCCCCCHHHHHHH-----HHHcc
Confidence              344544444444443321100        00000100   000000 000000000011235667777     99999


Q ss_pred             CCCCCCCChhhhhcCcccccCCCC
Q psy7309         217 HDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       217 ~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      .||++|||++|+|+||||.+...+
T Consensus       320 ~dP~~R~ta~e~L~hp~f~~~~~~  343 (405)
T 3rgf_A          320 MDPIKRITSEQAMQDPYFLEDPLP  343 (405)
T ss_dssp             SSGGGSCCHHHHHTSGGGTSSSCC
T ss_pred             CCcccCCCHHHHhcChhhccCCCC
Confidence            999999999999999999976554

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.95  E-value=5.5e-29  Score=248.43  Aligned_cols=191  Identities=23%  Similarity=0.299  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+.......                     ...
T Consensus       124 ~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~---------------------~~~  182 (351)
T 3mi9_A          124 SEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKN---------------------SQP  182 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSS---------------------SSC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhccccccccc---------------------ccc
Confidence            46899999999999999999999999999999999999999999999985432100                     122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh----hHHHHHHHhhhc
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK----TLEELKHNIRRE  157 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~----~~~~l~~~i~~~  157 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|+|++|.+.    ........+...
T Consensus       183 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~ell~g~~pf~~~~~~~~~~~i~~~  244 (351)
T 3mi9_A          183 NRYTNRVVTLWYRPPELLLG--ERDYGPPI--DLWGA--------------GCIMAEMWTRSPIMQGNTEQHQLALISQL  244 (351)
T ss_dssp             CCCCSSCSCGGGCCHHHHTT--CCSCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccCCcccccCccCchhhcC--CCCCCcHh--HHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence            34456789999999999861  34578888  99999              9999997765541    111111111111


Q ss_pred             CCCCCCchhh--hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         158 NGPSTGSNVQ--KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       158 ~~p~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+......+.  .....+.   ...............+.....++.+.+||     .+||+.||++|||++|+|+||||.
T Consensus       245 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~L~~dP~~R~t~~e~l~hp~f~  316 (351)
T 3mi9_A          245 CGSITPEVWPNVDNYELYE---KLELVKGQKRKVKDRLKAYVRDPYALDLI-----DKLLVLDPAQRIDSDDALNHDFFW  316 (351)
T ss_dssp             HCCCCTTTSTTGGGCGGGT---SSCCCSSCCCCHHHHHHHHHCCHHHHHHH-----HHHSCSSGGGSCCHHHHHTSGGGG
T ss_pred             hCCCChhhccccccchhhc---ccccccccccCHHHHhhhccCChHHHHHH-----HHHhcCChhhCCCHHHHhCCCCcC
Confidence            1111111000  0000000   00000000000000011111235566777     999999999999999999999998


Q ss_pred             cCCC
Q psy7309         236 EGSS  239 (454)
Q Consensus       236 ~~~~  239 (454)
                      ....
T Consensus       317 ~~~~  320 (351)
T 3mi9_A          317 SDPM  320 (351)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            6443

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=1.2e-29  Score=250.86  Aligned_cols=162  Identities=19%  Similarity=0.237  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc--CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY--EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~--~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.  ++.+||+|||++.....                         
T Consensus       102 ~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~-------------------------  156 (321)
T 1tki_A          102 REIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKP-------------------------  156 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCT-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCC-------------------------
Confidence            368899999999999999999999999999999987  78999999999975421                         


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                       .......+||+.|+|||++.   +..++.++  ||||+              ||++|+|++|.+               
T Consensus       157 -~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~~ll~g~~---------------  201 (321)
T 1tki_A          157 -GDNFRLLFTAPEYYAPEVHQ---HDVVSTAT--DMWSL--------------GTLVYVLLSGIN---------------  201 (321)
T ss_dssp             -TCEEEEEESCGGGSCHHHHT---TCEECHHH--HHHHH--------------HHHHHHHHHSSC---------------
T ss_pred             -CCccccccCChhhcCcHHhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------
Confidence             12234568999999999998   56788888  99999              999999776543               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      |+.+......+..+.... ..++..    .|     ...++.+.++|     .+||..||.+|||+.|+|+||||....
T Consensus       202 pf~~~~~~~~~~~i~~~~-~~~~~~----~~-----~~~s~~~~~li-----~~~L~~dp~~Rpt~~e~l~hp~~~~~~  265 (321)
T 1tki_A          202 PFLAETNQQIIENIMNAE-YTFDEE----AF-----KEISIEAMDFV-----DRLLVKERKSRMTASEALQHPWLKQKI  265 (321)
T ss_dssp             TTCCSSHHHHHHHHHHTC-CCCCHH----HH-----TTSCHHHHHHH-----HTTSCSSGGGSCCHHHHHHSHHHHSCG
T ss_pred             CCcCCCHHHHHHHHHcCC-CCCChh----hh-----ccCCHHHHHHH-----HHHcCCChhHCcCHHHHhcChhhccCc
Confidence            344444444444433222 222211    11     12236777888     999999999999999999999998643

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.95  E-value=7.4e-29  Score=245.11  Aligned_cols=162  Identities=25%  Similarity=0.473  Sum_probs=122.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       141 ~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~-------------------------~~  195 (321)
T 2c30_A          141 EQIATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISK-------------------------DV  195 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS-------------------------SS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeeccc-------------------------Cc
Confidence            46889999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              |+++|||++|+.               |+
T Consensus       196 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~el~~g~~---------------pf  241 (321)
T 2c30_A          196 PKRKSLVGTPYWMAPEVIS---RSLYATEV--DIWSL--------------GIMVIEMVDGEP---------------PY  241 (321)
T ss_dssp             CCBCCCCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             cccccccCCccccCHhhhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            2234568999999999997   66788888  99999              999999776554               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ...........+.......+...           ...++...++|     .+||+.||++|||++|+++||||....
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~dp~~Rps~~ell~hp~~~~~~  302 (321)
T 2c30_A          242 FSDSPVQAMKRLRDSPPPKLKNS-----------HKVSPVLRDFL-----ERMLVRDPQERATAQELLDHPFLLQTG  302 (321)
T ss_dssp             TTSCHHHHHHHHHHSSCCCCTTG-----------GGSCHHHHHHH-----HHHSCSSTTTSCCHHHHHTSGGGGGCC
T ss_pred             CCCCHHHHHHHHhcCCCCCcCcc-----------ccCCHHHHHHH-----HHHccCChhhCcCHHHHhcChhhccCC
Confidence            22222222233322222222111           11236677888     999999999999999999999998543

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.95  E-value=7.2e-29  Score=245.28  Aligned_cols=185  Identities=23%  Similarity=0.311  Sum_probs=118.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||.|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       100 ~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~-------------------------~~  154 (324)
T 3mtl_A          100 HNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSI-------------------------PT  154 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccC-------------------------Cc
Confidence            46889999999999999999999999999999999999999999999974321                         12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|+|++|++     ...+.+......
T Consensus       155 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~l~~g~~pf~~~~~~~~~~~i~~~  216 (324)
T 3mtl_A          155 KTYDNEVVTLWYRPPDILLG--STDYSTQI--DMWGV--------------GCIFYEMATGRPLFPGSTVEEQLHFIFRI  216 (324)
T ss_dssp             --------CGGGCCHHHHTT--CCCCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccccccCcccccChhhhcC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            23345688999999999871  35678888  99999              999999776554     122222222232


Q ss_pred             cCCCCCCchhhhhhh--hhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQ--KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                      .+.|..... .....  .+..   ..++.... ..+... ....++.+.+||     ++||+.||++|||++|+|+||||
T Consensus       217 ~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~-~~~~~~-~~~~~~~~~~li-----~~~L~~dP~~R~t~~e~l~hp~f  285 (324)
T 3mtl_A          217 LGTPTEETW-PGILSNEEFKT---YNYPKYRA-EALLSH-APRLDSDGADLL-----TKLLQFEGRNRISAEDAMKHPFF  285 (324)
T ss_dssp             HCCCCTTTS-TTGGGCHHHHH---TCCCCCCC-CCHHHH-CTTSCHHHHHHH-----HHHSCSSGGGSCCHHHHTTSGGG
T ss_pred             hCCCChHhc-hhhhcchhhcc---cccccccc-hhhhhh-cCCCCHHHHHHH-----HHHcCcCcccCCCHHHHhcChhh
Confidence            233322211 10000  0000   00111000 000000 012336667888     99999999999999999999999


Q ss_pred             ccCCCC
Q psy7309         235 LEGSSS  240 (454)
Q Consensus       235 ~~~~~~  240 (454)
                      ......
T Consensus       286 ~~~~~~  291 (324)
T 3mtl_A          286 LSLGER  291 (324)
T ss_dssp             GGGCST
T ss_pred             hhcccc
Confidence            976543

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.95  E-value=3.1e-29  Score=246.50  Aligned_cols=153  Identities=29%  Similarity=0.404  Sum_probs=113.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       157 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~--------------------------~  210 (311)
T 3p1a_A          157 AQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGT--------------------------A  210 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeeccc--------------------------C
Confidence            46889999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCc-hhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDR-PKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~-~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.    +.|+.++  ||||+              ||+++||+++. ++........+.     
T Consensus       211 ~~~~~~~gt~~y~aPE~~~----~~~~~~~--Diwsl--------------G~il~el~~g~~~~~~~~~~~~~~-----  265 (311)
T 3p1a_A          211 GAGEVQEGDPRYMAPELLQ----GSYGTAA--DVFSL--------------GLTILEVACNMELPHGGEGWQQLR-----  265 (311)
T ss_dssp             ----CCCCCGGGCCGGGGG----TCCSTHH--HHHHH--------------HHHHHHHHHTCCCCSSHHHHHHHT-----
T ss_pred             CCCcccCCCccccCHhHhc----CCCCchh--hHHHH--------------HHHHHHHHhCCCCCCCccHHHHHh-----
Confidence            2234457999999999986    3688888  99999              99999976653 211111111111     


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                                    ..   ..+...         ....++.+.++|     .+||+.||++|||++|+|+||||++
T Consensus       266 --------------~~---~~~~~~---------~~~~~~~l~~li-----~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          266 --------------QG---YLPPEF---------TAGLSSELRSVL-----VMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             --------------TT---CCCHHH---------HTTSCHHHHHHH-----HHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             --------------cc---CCCccc---------ccCCCHHHHHHH-----HHHcCCChhhCcCHHHHHhCccccC
Confidence                          00   011110         012236677888     9999999999999999999999975

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.95  E-value=1.3e-28  Score=244.05  Aligned_cols=183  Identities=24%  Similarity=0.317  Sum_probs=116.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-----CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-----EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-----~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.     ++.+||+|||+|.....                      
T Consensus       132 ~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~----------------------  189 (329)
T 3gbz_A          132 RVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGI----------------------  189 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCC----------------------
Confidence            468899999999999999999999999999999954     44599999999986532                      


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHH
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELK  151 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~  151 (454)
                         ........+||+.|+|||++..  ...|+.++  ||||+              ||++|||+++.+     ...+.+.
T Consensus       190 ---~~~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~ell~g~~pf~~~~~~~~~~  248 (329)
T 3gbz_A          190 ---PIRQFTHEIITLWYRPPEILLG--SRHYSTSV--DIWSI--------------ACIWAEMLMKTPLFPGDSEIDQLF  248 (329)
T ss_dssp             -------------CCTTCCHHHHTT--CCCCCTHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHH
T ss_pred             ---cccccCCCcCCccccCHHHhcC--CCCCCcHH--HHHHH--------------HHHHHHHHHCCCCcCCCCHHHHHH
Confidence               1223445688999999999871  24578888  99999              999999766544     2223333


Q ss_pred             HHhhhcCCCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         152 HNIRRENGPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       152 ~~i~~~~~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ..+...+.|..... .......+.    ..++.... ..+........++.+.+||     .+||+.||++|||++|+|+
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~li-----~~~L~~dP~~R~t~~e~l~  318 (329)
T 3gbz_A          249 KIFEVLGLPDDTTWPGVTALPDWK----QSFPKFRG-KTLKRVLGALLDDEGLDLL-----TAMLEMDPVKRISAKNALE  318 (329)
T ss_dssp             HHHHHHCCCCTTTSTTGGGSTTCC----TTCCCCCC-CCHHHHHGGGSCHHHHHHH-----HHHTCSSGGGSCCHHHHHT
T ss_pred             HHHHHhCCCchhhhhhhhhhhhhh----hhhhhhcc-ccHhhhcccccCHHHHHHH-----HHHccCChhhCCCHHHHhC
Confidence            33332222222111 000000000    01111100 0111122223446677888     9999999999999999999


Q ss_pred             CcccccC
Q psy7309         231 QPISLEG  237 (454)
Q Consensus       231 hp~f~~~  237 (454)
                      ||||...
T Consensus       319 hp~f~~~  325 (329)
T 3gbz_A          319 HPYFSHN  325 (329)
T ss_dssp             SGGGSSS
T ss_pred             CcccCCC
Confidence            9999854

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.95  E-value=2.8e-29  Score=256.73  Aligned_cols=165  Identities=24%  Similarity=0.292  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++++||+|||+|+....                        ...
T Consensus       168 ~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~------------------------~~~  223 (410)
T 3v8s_A          168 KWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNK------------------------EGM  223 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT------------------------TSE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeecc------------------------CCc
Confidence            35789999999999999999999999999999999999999999999975421                        111


Q ss_pred             CCCcCcccccceeccccccccc-cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGV-KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~-~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......+||+.|+|||++.... ...|+.++  ||||+              ||++|||++|++               |
T Consensus       224 ~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~--DiwSl--------------Gvilyell~G~~---------------P  272 (410)
T 3v8s_A          224 VRCDTAVGTPDYISPEVLKSQGGDGYYGREC--DWWSV--------------GVFLYEMLVGDT---------------P  272 (410)
T ss_dssp             EECCSCCSCGGGCCHHHHHTTTTTCEEETHH--HHHHH--------------HHHHHHHHHSSC---------------T
T ss_pred             ccccCCcCCccccCHHHhhccCCCcCCCCcc--eEecc--------------hHHHHHHHhCCC---------------C
Confidence            1234568999999999987321 12378888  99999              999999876654               4


Q ss_pred             CCCchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC--CCChhhhhcCcccccC
Q psy7309         161 STGSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK--RPSSEQNLCQPISLEG  237 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~--Rpta~e~l~hp~f~~~  237 (454)
                      +.+.+......++... ....+|..           ...++.+.+||     ++||+.+|.+  |||++|+++||||...
T Consensus       273 f~~~~~~~~~~~i~~~~~~~~~p~~-----------~~~s~~~~~li-----~~lL~~~~~rlgR~~~~ei~~Hp~f~~~  336 (410)
T 3v8s_A          273 FYADSLVGTYSKIMNHKNSLTFPDD-----------NDISKEAKNLI-----CAFLTDREVRLGRNGVEEIKRHLFFKND  336 (410)
T ss_dssp             TCCSSHHHHHHHHHTHHHHCCCCTT-----------CCCCHHHHHHH-----HHHSSCGGGCTTSSCHHHHHTSGGGCCS
T ss_pred             CCCCChhhHHHHHHhccccccCCCc-----------ccccHHHHHHH-----HHHccChhhhCCCCCHHHHhcCccccCC
Confidence            4444433333333321 11233332           11237788899     9999999988  9999999999999853

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.95  E-value=4.8e-29  Score=252.36  Aligned_cols=182  Identities=19%  Similarity=0.344  Sum_probs=130.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||+|+....                          
T Consensus       141 ~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~--------------------------  194 (383)
T 3eb0_A          141 NLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIP--------------------------  194 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEETTTTEEEECCCTTCEECCT--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcCCCCcEEEEECCCCcccCC--------------------------
Confidence            36889999999999999999999999999999998 578999999999985421                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIR  155 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~  155 (454)
                      .......+||+.|+|||++.  +...|+.++  ||||+              ||++|||++|++     ...+.+..++.
T Consensus       195 ~~~~~~~~~t~~y~aPE~~~--~~~~~~~~~--Diwsl--------------G~il~ell~g~~pf~~~~~~~~~~~i~~  256 (383)
T 3eb0_A          195 SEPSVAYICSRFYRAPELML--GATEYTPSI--DLWSI--------------GCVFGELILGKPLFSGETSIDQLVRIIQ  256 (383)
T ss_dssp             TSCCCCCCCCSSCCCHHHHT--TCSSCCTHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHH
T ss_pred             CCCCcCcccCCCccCHHHhc--CCCCCCcch--hhhhH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHH
Confidence            22344568899999999987  134588888  99999              999999776554     23444545444


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ..+.|... .....-.   ......+|... ...|....+...++.+.+||     .+||+.||.+|||+.|+|+||||.
T Consensus       257 ~~g~p~~~-~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~li-----~~~L~~dP~~R~t~~e~l~hp~f~  326 (383)
T 3eb0_A          257 IMGTPTKE-QMIRMNP---HYTEVRFPTLK-AKDWRKILPEGTPSLAIDLL-----EQILRYEPDLRINPYEAMAHPFFD  326 (383)
T ss_dssp             HHCCCCHH-HHHHHCT---TC--CCCCCCC-CCCHHHHSCTTCCHHHHHHH-----HHHCCSSGGGSCCHHHHHTSGGGH
T ss_pred             HhCCCCHH-HHHHhCc---ccccccCCccC-cccHHhhCCCCCCHHHHHHH-----HHHccCChhhCCCHHHHhcCHHHH
Confidence            44443221 1111100   11122223221 13455555555667788888     999999999999999999999998


Q ss_pred             cC
Q psy7309         236 EG  237 (454)
Q Consensus       236 ~~  237 (454)
                      ..
T Consensus       327 ~~  328 (383)
T 3eb0_A          327 HL  328 (383)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.95  E-value=2.2e-28  Score=244.00  Aligned_cols=185  Identities=24%  Similarity=0.272  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+|+....                         ..
T Consensus       112 ~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~-------------------------~~  166 (346)
T 1ua2_A          112 SHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS-------------------------PN  166 (346)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTS-------------------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccC-------------------------Cc
Confidence            46889999999999999999999999999999999999999999999986531                         12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|||+++.+     ...+.+...+..
T Consensus       167 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~ell~g~~~~~~~~~~~~~~~i~~~  228 (346)
T 1ua2_A          167 RAYTHQVVTRWYRAPELLFG--ARMYGVGV--DMWAV--------------GCILAELLLRVPFLPGDSDLDQLTRIFET  228 (346)
T ss_dssp             CCCCCSCCCCTTCCHHHHTT--CSCCCHHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             ccCCcccccccccCchHhhC--CCCCCchh--hhHhH--------------HHHHHHHHHCCCCCCCCCHHHHHHHHHHH
Confidence            23445689999999999861  34578888  99999              999999766554     122233333332


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.|..... ...    ............+...+..+. ...++.+.+||     ++||+.||++|||++|+|+||||..
T Consensus       229 ~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~li-----~~~L~~dP~~Rpt~~ell~h~~f~~  297 (346)
T 1ua2_A          229 LGTPTEEQW-PDM----CSLPDYVTFKSFPGIPLHHIF-SAAGDDLLDLI-----QGLFLFNPCARITATQALKMKYFSN  297 (346)
T ss_dssp             HCCCCTTTS-SST----TSSTTCCCCCCCCCCCHHHHC-TTCCHHHHHHH-----HHHHCSSTTTSCCHHHHHTSGGGTS
T ss_pred             cCCCChhhh-hhh----ccCcccccccccCCCChHHhh-ccCCHHHHHHH-----HHHhccChhhCCCHHHHhcChhhhc
Confidence            222221110 000    000000000000011111111 12236677888     9999999999999999999999987


Q ss_pred             CCCC
Q psy7309         237 GSSS  240 (454)
Q Consensus       237 ~~~~  240 (454)
                      ...+
T Consensus       298 ~~~~  301 (346)
T 1ua2_A          298 RPGP  301 (346)
T ss_dssp             SSCC
T ss_pred             CCCC
Confidence            6543

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.95  E-value=6.9e-29  Score=249.70  Aligned_cols=160  Identities=27%  Similarity=0.422  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++   .+||+|||++.....                        
T Consensus       128 ~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~------------------------  183 (362)
T 2bdw_A          128 ADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND------------------------  183 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTT------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecC------------------------
Confidence            46889999999999999999999999999999998654   599999999975421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|.+              
T Consensus       184 --~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~~ll~g~~--------------  228 (362)
T 2bdw_A          184 --SEAWHGFAGTPGYLSPEVLK---KDPYSKPV--DIWAC--------------GVILYILLVGYP--------------  228 (362)
T ss_dssp             --CCSCCCSCSCTTTCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CcccccCCCCccccCHHHHc---cCCCCchh--hHHHH--------------HHHHHHHHHCCC--------------
Confidence              12234568999999999998   66788888  99999              999999876554              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       |+.+.........+... ...++..    .|.     ..++.+.+||     .+||+.||++|||+.|+|+||||..
T Consensus       229 -Pf~~~~~~~~~~~i~~~-~~~~~~~----~~~-----~~~~~~~~li-----~~~L~~dP~~R~t~~e~l~hp~~~~  290 (362)
T 2bdw_A          229 -PFWDEDQHRLYAQIKAG-AYDYPSP----EWD-----TVTPEAKSLI-----DSMLTVNPKKRITADQALKVPWICN  290 (362)
T ss_dssp             -SSCCSSHHHHHHHHHHT-CCCCCTT----GGG-----GSCHHHHHHH-----HHHSCSSGGGSCCHHHHTTSHHHHT
T ss_pred             -CCCCCCHHHHHHHHHhC-CCCCCcc----ccc-----CCCHHHHHHH-----HHHcCCChhhCcCHHHHhcCcccCC
Confidence             33333333333333322 2222221    122     2236777888     9999999999999999999999974

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.95  E-value=4.9e-29  Score=246.89  Aligned_cols=160  Identities=26%  Similarity=0.352  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC----CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED----HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~----~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++    .+||+|||++.....                       
T Consensus       114 ~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~-----------------------  170 (326)
T 2y0a_A          114 EEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF-----------------------  170 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCT-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCC-----------------------
Confidence            46889999999999999999999999999999999887    799999999975421                       


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                         .......+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|.+             
T Consensus       171 ---~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~~ll~g~~-------------  215 (326)
T 2y0a_A          171 ---GNEFKNIFGTPEFVAPEIVN---YEPLGLEA--DMWSI--------------GVITYILLSGAS-------------  215 (326)
T ss_dssp             ---TSCCCCCCSCTTTCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSCC-------------
T ss_pred             ---CCccccccCCcCcCCceeec---CCCCCcHH--HHHHH--------------HHHHHHHHHCcC-------------
Confidence               12234568999999999987   67788888  99999              999999776543             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                        |+.+......+..+.... ..++...    |     ...++.+.+||     ++||+.||++|||++|+|+||||..
T Consensus       216 --pf~~~~~~~~~~~~~~~~-~~~~~~~----~-----~~~~~~~~~li-----~~~L~~dP~~Rpt~~e~l~hp~~~~  277 (326)
T 2y0a_A          216 --PFLGDTKQETLANVSAVN-YEFEDEY----F-----SNTSALAKDFI-----RRLLVKDPKKRMTIQDSLQHPWIKP  277 (326)
T ss_dssp             --SSCCSSHHHHHHHHHHTC-CCCCHHH----H-----TTSCHHHHHHH-----HHHSCSSGGGSCCHHHHHHSTTTSC
T ss_pred             --CCCCCCHHHHHHHHHhcC-CCcCccc----c-----ccCCHHHHHHH-----HHHccCChhhCCCHHHHhcCCCccC
Confidence              333333333333332211 1122110    1     12236677888     9999999999999999999999974

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.95  E-value=5.3e-29  Score=256.62  Aligned_cols=165  Identities=21%  Similarity=0.309  Sum_probs=123.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++|||||||||+|||++.++++||+|||+|+....                        ...
T Consensus       175 ~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~------------------------~~~  230 (437)
T 4aw2_A          175 EMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLME------------------------DGT  230 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT------------------------TSC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhccc------------------------CCC
Confidence            36789999999999999999999999999999999999999999999975421                        111


Q ss_pred             CCCcCcccccceeccccccc--cccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSH--GVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~--~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ......+||+.|+|||++..  .....|+.++  ||||+              ||++|||++|++               
T Consensus       231 ~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~--DvwSl--------------Gvil~elltG~~---------------  279 (437)
T 4aw2_A          231 VQSSVAVGTPDYISPEILQAMEGGKGRYGPEC--DWWSL--------------GVCMYEMLYGET---------------  279 (437)
T ss_dssp             EECCSCCSCGGGCCHHHHHHHHTSCCEECTHH--HHHHH--------------HHHHHHHHHSSC---------------
T ss_pred             cccccccCCcCeeChHHHhhcccCCCCCCCcC--eeHHH--------------HHHHHHHHhCCC---------------
Confidence            22344689999999999862  1235688888  99999              999999876654               


Q ss_pred             CCCCchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC--CCChhhhhcCccccc
Q psy7309         160 PSTGSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK--RPSSEQNLCQPISLE  236 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~--Rpta~e~l~hp~f~~  236 (454)
                      |+.+.+......++... ....+|....          ..++.+.+||     ++||..+|++  |++++|+++||||..
T Consensus       280 Pf~~~~~~~~~~~i~~~~~~~~~p~~~~----------~~s~~~~dLi-----~~lL~~~~~r~~r~~~~eil~Hpff~~  344 (437)
T 4aw2_A          280 PFYAESLVETYGKIMNHKERFQFPTQVT----------DVSENAKDLI-----RRLICSREHRLGQNGIEDFKKHPFFSG  344 (437)
T ss_dssp             TTCCSSHHHHHHHHHTHHHHCCCCSSCC----------CSCHHHHHHH-----HTTSSCGGGCTTTTTTHHHHTSGGGTT
T ss_pred             CCCCCChhHHHHhhhhccccccCCcccc----------cCCHHHHHHH-----HHHhcccccccCCCCHHHHhCCCccCC
Confidence            34443333333333211 1223343321          1237788899     9999999988  999999999999985

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.95  E-value=1e-28  Score=248.93  Aligned_cols=182  Identities=28%  Similarity=0.374  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                          .
T Consensus       127 ~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~--------------------------~  180 (371)
T 2xrw_A          127 ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--------------------------S  180 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeeccccccc--------------------------c
Confidence            36789999999999999999999999999999999999999999999985421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|++     .....+...+..
T Consensus       181 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~el~~g~~pf~~~~~~~~~~~i~~~  241 (371)
T 2xrw_A          181 FMMTPYVVTRYYRAPEVIL---GMGYKENV--DIWSV--------------GCIMGEMIKGGVLFPGTDHIDQWNKVIEQ  241 (371)
T ss_dssp             ---------CTTCCHHHHT---TCCCCTTH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHC-
T ss_pred             cccCCceecCCccCHHHhc---CCCCCchH--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            2234568999999999998   56788888  99999              999999776554     122333333332


Q ss_pred             cCCCCCCc--hhhhhhhhhccCCCCCCCccccccccccccc-----------cccccchhHHHHHHHHhhhcCCCCCCCC
Q psy7309         157 ENGPSTGS--NVQKSLQKFQKSPPSVYREWRSSFEWSTVRN-----------NIKSNFQHFLILIHQQKWCLNHDPSKRP  223 (454)
Q Consensus       157 ~~~p~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~-----------~~~~~~~~~li~~~~~~~~L~~dP~~Rp  223 (454)
                      .+.|....  ........+... .+.+..    ..|+...+           ...++.+.+||     ++||+.||++||
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~mL~~dP~~R~  311 (371)
T 2xrw_A          242 LGTPCPEFMKKLQPTVRTYVEN-RPKYAG----YSFEKLFPDVLFPADSEHNKLKASQARDLL-----SKMLVIDASKRI  311 (371)
T ss_dssp             CCCCCHHHHTTSCHHHHHHHHS-SCCCCC----CCHHHHSCGGGSCCSSHHHHHHHHHHHHHH-----HHHSCSSGGGSC
T ss_pred             hCCCCHHHHHHhhhHHHHHHhh-Cccccc----cchhhhcccccCcccccccccccHHHHHHH-----HHHCcCChhhCC
Confidence            22221110  000011111100 000000    11111100           11134566777     999999999999


Q ss_pred             ChhhhhcCcccccCC
Q psy7309         224 SSEQNLCQPISLEGS  238 (454)
Q Consensus       224 ta~e~l~hp~f~~~~  238 (454)
                      |++|+|+||||....
T Consensus       312 t~~e~l~hp~~~~~~  326 (371)
T 2xrw_A          312 SVDEALQHPYINVWY  326 (371)
T ss_dssp             CHHHHHHSHHHHTTC
T ss_pred             CHHHHhCCcchhhhc
Confidence            999999999998644

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.95  E-value=6.5e-29  Score=248.60  Aligned_cols=182  Identities=24%  Similarity=0.250  Sum_probs=119.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-------------------------CCCeEEecccchhhhhhhc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-------------------------EDHVKIGDFGLATNILQKH   56 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-------------------------~~~vKL~DFGla~~~~~~~   56 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.                         ++.+||+|||+|+...   
T Consensus       137 ~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~---  213 (360)
T 3llt_A          137 EDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKS---  213 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETT---
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecC---
Confidence            468899999999999999999999999999999975                         7789999999997432   


Q ss_pred             CCCccccccCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceee
Q psy7309          57 AGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLK  136 (454)
Q Consensus        57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il  136 (454)
                                               ......+||+.|+|||++.   +..|+.++  ||||+              ||++
T Consensus       214 -------------------------~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il  249 (360)
T 3llt_A          214 -------------------------DYHGSIINTRQYRAPEVIL---NLGWDVSS--DMWSF--------------GCVL  249 (360)
T ss_dssp             -------------------------SCCCSCCSCGGGCCHHHHT---TCCCCTTH--HHHHH--------------HHHH
T ss_pred             -------------------------CCCcCccCcccccCcHHHc---CCCCCCcc--chHHH--------------HHHH
Confidence                                     1234568999999999998   67788888  99999              9999


Q ss_pred             eeecCCchh----hHHHHHHHhhhcCCCCCCchhhhhhh----hhccC--CCCCCCccccccc-cc------cccccccc
Q psy7309         137 AEVYKDRPK----TLEELKHNIRRENGPSTGSNVQKSLQ----KFQKS--PPSVYREWRSSFE-WS------TVRNNIKS  199 (454)
Q Consensus       137 ~el~~~~~~----~~~~l~~~i~~~~~p~~~~~~~~~~~----~~~~~--~~~~~p~~~~~~~-~~------~~~~~~~~  199 (454)
                      |+|++|++.    ...+....+.....+.+.........    .+...  ....+|....... ..      .......+
T Consensus       250 ~ell~g~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  329 (360)
T 3llt_A          250 AELYTGSLLFRTHEHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVNKDELKLAWPENASSINSIKHVKKCLPLYKIIKH  329 (360)
T ss_dssp             HHHHHSSCSCCCSSHHHHHHHHHHHTCCCCHHHHHHHTTSGGGGGEETTTTEECTTTTCSCHHHHHHHHTCCCHHHHCCC
T ss_pred             HHHHHCCCCCCCCcHHHHHHHHHHhcCCCCHHHHhhhhhccCccccCcccceecCcccccchhhhhhhhhcccccccchH
Confidence            997765541    12222222333333333222111110    00000  0001111100000 00      00001112


Q ss_pred             cchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         200 NFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       200 ~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      +.+.+||     ++||+.||++|||++|+|+||||+
T Consensus       330 ~~l~~li-----~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          330 ELFCDFL-----YSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             HHHHHHH-----HHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             HHHHHHH-----HHHhcCChhhCCCHHHHhcCcccC
Confidence            4455666     999999999999999999999995

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.95  E-value=1.1e-28  Score=248.10  Aligned_cols=166  Identities=24%  Similarity=0.261  Sum_probs=112.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC--eEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH--VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~--vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.  +||+|||+|+....                         
T Consensus       116 ~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~-------------------------  170 (361)
T 3uc3_A          116 DEARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVL-------------------------  170 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccc-------------------------
Confidence            468899999999999999999999999999999987765  99999999874321                         


Q ss_pred             CCCCCcCcccccceecccccccccccccccc-CCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQF-TPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~-~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                       .......+||+.|+|||++.   +..++.+ +  ||||+              ||++|+|++|+++...          
T Consensus       171 -~~~~~~~~gt~~y~aPE~~~---~~~~~~~~~--Diwsl--------------G~il~ell~g~~Pf~~----------  220 (361)
T 3uc3_A          171 -HSQPKSTVGTPAYIAPEVLL---RQEYDGKIA--DVWSC--------------GVTLYVMLVGAYPFED----------  220 (361)
T ss_dssp             -----------CTTSCHHHHH---CSSCCHHHH--HHHHH--------------HHHHHHHHHSSCSCC-----------
T ss_pred             -cCCCCCCcCCCCcCChhhhc---CCCCCCCee--eeehh--------------HHHHHHHHhCCCCCCC----------
Confidence             12234468999999999987   4555544 7  99999              9999997766542110          


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       .............+. .....+|...           ..++.+.+||     ++||+.||++|||++|+++||||....
T Consensus       221 -~~~~~~~~~~~~~~~-~~~~~~~~~~-----------~~s~~~~~li-----~~~L~~dP~~Rps~~ell~hp~f~~~~  282 (361)
T 3uc3_A          221 -PEEPRDYRKTIQRIL-SVKYSIPDDI-----------RISPECCHLI-----SRIFVADPATRISIPEIKTHSWFLKNL  282 (361)
T ss_dssp             ----CCCHHHHHHHHH-TTCCCCCTTS-----------CCCHHHHHHH-----HHHSCSCTTTSCCHHHHHTSHHHHTTC
T ss_pred             -CccHHHHHHHHHHHh-cCCCCCCCcC-----------CCCHHHHHHH-----HHHccCChhHCcCHHHHHhCcchhcCC
Confidence             000111222222222 2222333321           1236677888     999999999999999999999998765


Q ss_pred             CC
Q psy7309         239 SS  240 (454)
Q Consensus       239 ~~  240 (454)
                      ..
T Consensus       283 ~~  284 (361)
T 3uc3_A          283 PA  284 (361)
T ss_dssp             CC
T ss_pred             ch
Confidence            54

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.95  E-value=5.8e-29  Score=250.58  Aligned_cols=156  Identities=19%  Similarity=0.204  Sum_probs=113.5

Q ss_pred             HHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCCC
Q psy7309           5 WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSH   84 (454)
Q Consensus         5 ~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (454)
                      +.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                            ..
T Consensus       197 ~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~----------------------------~~  248 (371)
T 3q60_A          197 HILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGT----------------------------RG  248 (371)
T ss_dssp             HHHHHHHHHHHHHHHHTTEEETTCSGGGEEECTTSCEEECCGGGEEETTC----------------------------EE
T ss_pred             HHHHHHHHHHHHHHHHCCCccCcCCHHHEEECCCCCEEEEecceeeecCC----------------------------Cc
Confidence            45669999999999999999999999999999999999999999985421                            11


Q ss_pred             cCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCCCc
Q psy7309          85 TGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGS  164 (454)
Q Consensus        85 ~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~~~  164 (454)
                      ....||+.|+|||++.. ....|+.++  ||||+              ||++|||++|+.               |+...
T Consensus       249 ~~~~~t~~y~aPE~~~~-~~~~~~~~~--DiwSl--------------G~il~elltg~~---------------Pf~~~  296 (371)
T 3q60_A          249 PASSVPVTYAPREFLNA-STATFTHAL--NAWQL--------------GLSIYRVWCLFL---------------PFGLV  296 (371)
T ss_dssp             EGGGSCGGGCCHHHHTC-SEEECCHHH--HHHHH--------------HHHHHHHHHSSC---------------STTBC
T ss_pred             cCccCCcCCcChhhccC-CCCCcCccc--cHHHH--------------HHHHHHHHhCCC---------------CCCCc
Confidence            14567799999999971 126788888  99999              999999876654               22221


Q ss_pred             hhh--hhhhhh----ccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         165 NVQ--KSLQKF----QKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       165 ~~~--~~~~~~----~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ...  ......    .......++..           ...++.+.+||     .+||+.||++|||+.|+|+||||..
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~L~~dP~~Rpt~~e~l~hp~f~~  358 (371)
T 3q60_A          297 TPGIKGSWKRPSLRVPGTDSLAFGSC-----------TPLPDFVKTLI-----GRFLNFDRRRRLLPLEAMETPEFLQ  358 (371)
T ss_dssp             CTTCTTCCCBCCTTSCCCCSCCCTTS-----------SCCCHHHHHHH-----HHHTCSSTTTCCCHHHHTTSHHHHH
T ss_pred             Ccccccchhhhhhhhccccccchhhc-----------cCCCHHHHHHH-----HHHcCCChhhCCCHHHHhcCHHHHH
Confidence            100  000000    00111111111           12346777888     9999999999999999999999984

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.95  E-value=8.4e-29  Score=248.75  Aligned_cols=186  Identities=29%  Similarity=0.412  Sum_probs=124.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       128 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~----------------------~~~  185 (364)
T 3qyz_A          128 DHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH----------------------DHT  185 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGG----------------------CBC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCC----------------------Ccc
Confidence            4688999999999999999999999999999999999999999999998543210                      112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|+|++|++.     ..+.+...+..
T Consensus       186 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~ell~g~~pf~~~~~~~~~~~i~~~  247 (364)
T 3qyz_A          186 GFLTEYVATRWYRAPEIMLN--SKGYTKSI--DIWSV--------------GCILAEMLSNRPIFPGKHYLDQLNHILGI  247 (364)
T ss_dssp             CTTCCCCSCGGGCCHHHHHT--BCSCSTHH--HHHHH--------------HHHHHHHHHSSCSSCCSSGGGHHHHHHHH
T ss_pred             ccccccccccCCCCCHHhcC--CCCCCcch--hHHHH--------------HHHHHHHHHCCCCCCCCChHHHHHHHHHH
Confidence            23455689999999998762  34578888  99999              9999997665541     11222222222


Q ss_pred             cCCCCCCchhhh----hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         157 ENGPSTGSNVQK----SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       157 ~~~p~~~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      .+.|... ....    ....+...    ++.. ....|...... .++.+.+||     .+||+.||++|||++|+|+||
T Consensus       248 ~~~~~~~-~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~-~~~~~~~li-----~~~L~~dP~~R~t~~e~l~hp  315 (364)
T 3qyz_A          248 LGSPSQE-DLNCIINLKARNYLLS----LPHK-NKVPWNRLFPN-ADSKALDLL-----DKMLTFNPHKRIEVEQALAHP  315 (364)
T ss_dssp             HCSCCHH-HHHTCCCHHHHHHHHT----SCCC-CCCCHHHHCTT-SCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSG
T ss_pred             hCCCCHH-HHHHhhhhhHHHHHHh----cCCc-cCCCHHHhCCC-CCHHHHHHH-----HHHcCCChhhCCCHHHHhcCc
Confidence            2222111 0000    00000000    0100 01223333222 236677888     999999999999999999999


Q ss_pred             ccccCCC
Q psy7309         233 ISLEGSS  239 (454)
Q Consensus       233 ~f~~~~~  239 (454)
                      ||.....
T Consensus       316 ~~~~~~~  322 (364)
T 3qyz_A          316 YLEQYYD  322 (364)
T ss_dssp             GGTTTCC
T ss_pred             chhhccC
Confidence            9997654

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.95  E-value=2e-28  Score=254.92  Aligned_cols=159  Identities=25%  Similarity=0.337  Sum_probs=123.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||++....                          ..
T Consensus       116 ~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~--------------------------~~  169 (476)
T 2y94_A          116 KESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMS--------------------------DG  169 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--------------------------TT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhcc--------------------------cc
Confidence            4688999999999999999999999999999999999999999999997542                          12


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......+||+.|+|||++.   +..| +.++  ||||+              ||++|+|++|+.               |
T Consensus       170 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~~--DiwSl--------------Gvil~elltG~~---------------P  215 (476)
T 2y94_A          170 EFLRTSCGSPNYAAPEVIS---GRLYAGPEV--DIWSS--------------GVILYALLCGTL---------------P  215 (476)
T ss_dssp             CCBCCCCSCSTTCCHHHHT---TCCBCSHHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             ccccccCCCcCeEChhhcc---CCCCCCCcc--eehhh--------------HHHHHHHhhCCC---------------C
Confidence            2344568999999999988   4444 5677  99999              999999766543               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +.+........++... ....|..             .++.+.+||     ++||+.||++|||++|+++||||.....
T Consensus       216 f~~~~~~~~~~~i~~~-~~~~p~~-------------~s~~~~~Li-----~~~L~~dP~~Rpt~~eil~hp~~~~~~~  275 (476)
T 2y94_A          216 FDDDHVPTLFKKICDG-IFYTPQY-------------LNPSVISLL-----KHMLQVDPMKRATIKDIREHEWFKQDLP  275 (476)
T ss_dssp             SCCSSSHHHHHHHHTT-CCCCCTT-------------CCHHHHHHH-----HHHTCSSTTTSCCHHHHHTCHHHHTTCC
T ss_pred             CCCCCHHHHHHHHhcC-CcCCCcc-------------CCHHHHHHH-----HHHcCCCchhCcCHHHHHhCHHhhhcCc
Confidence            4444444444444422 2233332             236677888     9999999999999999999999987543

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.95  E-value=1e-28  Score=246.15  Aligned_cols=165  Identities=22%  Similarity=0.325  Sum_probs=113.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++ ++.+||+|||+|+.....                       ...
T Consensus       108 ~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~-----------------------~~~  163 (343)
T 3dbq_A          108 WERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD-----------------------TTS  163 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcc-----------------------ccc
Confidence            36789999999999999999999999999999997 688999999999754321                       111


Q ss_pred             CCCcCcccccceecccccccc--------ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHH
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--------VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHN  153 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--------~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~  153 (454)
                      ......+||+.|+|||++...        ....|+.++  ||||+              ||++|||++|+.+        
T Consensus       164 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~--Diwsl--------------G~il~ell~g~~p--------  219 (343)
T 3dbq_A          164 VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKS--DVWSL--------------GCILYYMTYGKTP--------  219 (343)
T ss_dssp             ------CCCCSSCCHHHHHHCC-----------CCHHH--HHHHH--------------HHHHHHHHHSSCT--------
T ss_pred             ccCCCCcCCcCcCCHHHHhhccccccccccccCCCchh--hHHHH--------------HHHHHHHHhCCCc--------
Confidence            223456899999999998520        125678888  99999              9999997766542        


Q ss_pred             hhhcCCCCCCc--hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         154 IRRENGPSTGS--NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       154 i~~~~~p~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                             +...  ........+.......+|..             .+..+.++|     .+||+.||.+|||+.|+|+|
T Consensus       220 -------f~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~L~~dp~~Rpt~~e~l~h  274 (343)
T 3dbq_A          220 -------FQQIINQISKLHAIIDPNHEIEFPDI-------------PEKDLQDVL-----KCCLKRDPKQRISIPELLAH  274 (343)
T ss_dssp             -------TTTCCSHHHHHHHHHCTTSCCCCCCC-------------SCHHHHHHH-----HHHTCSSTTTSCCHHHHHTS
T ss_pred             -------chhhhhHHHHHHHHhcCCcccCCccc-------------CCHHHHHHH-----HHHcCCChhHCCCHHHHHhC
Confidence                   2111  11111111111222223322             125567788     99999999999999999999


Q ss_pred             cccccCCC
Q psy7309         232 PISLEGSS  239 (454)
Q Consensus       232 p~f~~~~~  239 (454)
                      |||.....
T Consensus       275 p~~~~~~~  282 (343)
T 3dbq_A          275 PYVQIQTH  282 (343)
T ss_dssp             HHHHSCCC
T ss_pred             ccccccCC
Confidence            99986543

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.95  E-value=9.6e-29  Score=251.96  Aligned_cols=162  Identities=24%  Similarity=0.349  Sum_probs=114.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+++.+++||+.||.|||++||+||||||+|||++.   ++.+||+|||+|+...                         
T Consensus       161 ~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~-------------------------  215 (400)
T 1nxk_A          161 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-------------------------  215 (400)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccC-------------------------
Confidence            468899999999999999999999999999999998   7889999999997432                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                       ........+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++              
T Consensus       216 -~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~--------------  261 (400)
T 1nxk_A          216 -SHNSLTTPCYTPYYVAPEVLG---PEKYDKSC--DMWSL--------------GVIMYILLCGYP--------------  261 (400)
T ss_dssp             ------------CTTCCGGGSC---CCCSSSHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             -CCCccccCCCCCCccCHhhcC---CCCCCCcc--cHHHH--------------HHHHHHHHhCCC--------------
Confidence             122344578999999999997   67889888  99999              999999776554              


Q ss_pred             CCCCCchhh----hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         159 GPSTGSNVQ----KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       159 ~p~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                       |+.+....    .....+. .....++..    .|.     ..++.+.+||     ++||+.||++|||++|+++||||
T Consensus       262 -pf~~~~~~~~~~~~~~~i~-~~~~~~~~~----~~~-----~~s~~~~~li-----~~~L~~dP~~Rpt~~eil~hp~~  325 (400)
T 1nxk_A          262 -PFYSNHGLAISPGMKTRIR-MGQYEFPNP----EWS-----EVSEEVKMLI-----RNLLKTEPTQRMTITEFMNHPWI  325 (400)
T ss_dssp             -SCCCCTTCSSCCSHHHHHH-HTCCCCCTT----TTT-----TSCHHHHHHH-----HTTSCSSGGGSCCHHHHHHSHHH
T ss_pred             -CCCCCccccccHHHHHHHH-cCcccCCCc----ccc-----cCCHHHHHHH-----HHHCCCChhHCcCHHHHhcCccc
Confidence             22211100    0111111 111222211    121     1236677888     99999999999999999999999


Q ss_pred             ccCC
Q psy7309         235 LEGS  238 (454)
Q Consensus       235 ~~~~  238 (454)
                      ....
T Consensus       326 ~~~~  329 (400)
T 1nxk_A          326 MQST  329 (400)
T ss_dssp             HTTT
T ss_pred             cCCC
Confidence            8643

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.95  E-value=5.5e-29  Score=245.18  Aligned_cols=167  Identities=29%  Similarity=0.458  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+++..........       ...      ......
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~-------~~~------~~~~~~  231 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQT-------VLT------PMPAYA  231 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECSCC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecCCCcccEEEeCCCCEEEeecCcccccccchhhcc-------ccc------cccccc
Confidence            4789999999999999999999999999999999999999999999986532110000       000      001123


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      .....+||+.|+|||++.   +..|+.++  ||||+              ||++|||+++...........         
T Consensus       232 ~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~~~~~~~~~~~~---------  283 (332)
T 3qd2_B          232 THTGQVGTKLYMSPEQIH---GNNYSHKV--DIFSL--------------GLILFELLYSFSTQMERVRII---------  283 (332)
T ss_dssp             CCCSCC-CGGGSCHHHHH---CCCCCTHH--HHHHH--------------HHHHHHHHSCCCCHHHHHHHH---------
T ss_pred             cccccCCCcCccChHHhc---CCCCcchh--hHHHH--------------HHHHHHHHHcCCChhHHHHHH---------
Confidence            445678999999999998   66788888  99999              999999776554332221111         


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                              ....   ...+|...          ...++...++|     .+||+.||++|||++|+++||||..
T Consensus       284 --------~~~~---~~~~~~~~----------~~~~~~~~~li-----~~~l~~~p~~Rps~~~~l~~~~f~~  331 (332)
T 3qd2_B          284 --------TDVR---NLKFPLLF----------TQKYPQEHMMV-----QDMLSPSPTERPEATDIIENAIFEN  331 (332)
T ss_dssp             --------HHHH---TTCCCHHH----------HHHCHHHHHHH-----HHHHCSSGGGSCCHHHHHHSTTCCC
T ss_pred             --------HHhh---ccCCCccc----------ccCChhHHHHH-----HHHccCCCCcCCCHHHHhhchhhhc
Confidence                    0111   11122111          01125556788     9999999999999999999999974

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.95  E-value=1.9e-28  Score=248.74  Aligned_cols=162  Identities=28%  Similarity=0.385  Sum_probs=121.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc--CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY--EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~--~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.  .+.+||+|||+|+....                         
T Consensus       149 ~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~-------------------------  203 (387)
T 1kob_A          149 AEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNP-------------------------  203 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCT-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCC-------------------------
Confidence            468899999999999999999999999999999974  46799999999975421                         


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                       .......+||+.|+|||++.   +..++.++  ||||+              ||++|||++|.+               
T Consensus       204 -~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~elltg~~---------------  248 (387)
T 1kob_A          204 -DEIVKVTTATAEFAAPEIVD---REPVGFYT--DMWAI--------------GVLGYVLLSGLS---------------  248 (387)
T ss_dssp             -TSCEEEECSSGGGCCHHHHT---TCCBCHHH--HHHHH--------------HHHHHHHHHSCC---------------
T ss_pred             -CcceeeeccCCCccCchhcc---CCCCCCcc--cEeeH--------------hHHHHHHHhCCC---------------
Confidence             12233457999999999998   66788888  99999              999999776543               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      |+.+......+..+..... .++...    |     ...++.+.+||     .+||+.||++|||++|+|+||||....
T Consensus       249 Pf~~~~~~~~~~~i~~~~~-~~~~~~----~-----~~~s~~~~~li-----~~~L~~dP~~Rpt~~ell~hp~~~~~~  312 (387)
T 1kob_A          249 PFAGEDDLETLQNVKRCDW-EFDEDA----F-----SSVSPEAKDFI-----KNLLQKEPRKRLTVHDALEHPWLKGDH  312 (387)
T ss_dssp             SSCCSSHHHHHHHHHHCCC-CCCSST----T-----TTSCHHHHHHH-----HTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             CCCCCCHHHHHHHHHhCCC-CCCccc----c-----ccCCHHHHHHH-----HHHcCCChhHCcCHHHHhhCccccCCc
Confidence            3333333333333332211 111110    1     12236778888     999999999999999999999998654

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.94  E-value=1e-28  Score=247.27  Aligned_cols=159  Identities=26%  Similarity=0.411  Sum_probs=117.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC---eEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~---vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .++.+++||+.||+|||++||+||||||+|||++.++.   +||+|||++.....                         
T Consensus       131 ~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~-------------------------  185 (351)
T 3c0i_A          131 VASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGE-------------------------  185 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCT-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEecC-------------------------
Confidence            57889999999999999999999999999999987655   99999999975431                         


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ........+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|.+               
T Consensus       186 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~~ll~g~~---------------  231 (351)
T 3c0i_A          186 SGLVAGGRVGTPHFMAPEVVK---REPYGKPV--DVWGC--------------GVILFILLSGCL---------------  231 (351)
T ss_dssp             TSCBCCCCCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------
T ss_pred             CCeeecCCcCCcCccCHHHHc---CCCCCchH--hhHHH--------------HHHHHHHHHCCC---------------
Confidence            112234568999999999998   66788888  99999              999999776553               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      |+.+.. ......+..... .++..    .|.     ..++.+.+||     ++||+.||++|||+.|+|+||||..
T Consensus       232 pf~~~~-~~~~~~i~~~~~-~~~~~----~~~-----~~s~~~~~li-----~~~L~~dP~~R~s~~e~l~hp~~~~  292 (351)
T 3c0i_A          232 PFYGTK-ERLFEGIIKGKY-KMNPR----QWS-----HISESAKDLV-----RRMLMLDPAERITVYEALNHPWLKE  292 (351)
T ss_dssp             SSCSSH-HHHHHHHHHTCC-CCCHH----HHT-----TSCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSHHHHT
T ss_pred             CCCCcH-HHHHHHHHcCCC-CCCcc----ccc-----cCCHHHHHHH-----HHHCCCChhHCcCHHHHhcChhhcC
Confidence            222211 111222221211 11111    111     1236677888     9999999999999999999999985

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.94  E-value=1.8e-28  Score=245.41  Aligned_cols=159  Identities=26%  Similarity=0.378  Sum_probs=119.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++....                            
T Consensus       154 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~----------------------------  205 (348)
T 1u5q_A          154 VEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA----------------------------  205 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecC----------------------------
Confidence            3678999999999999999999999999999999999999999999987432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       .....+||+.|+|||++.......|+.++  ||||+              ||++|||++|++               |+
T Consensus       206 -~~~~~~gt~~y~aPE~~~~~~~~~~~~~~--Diwsl--------------G~il~ell~g~~---------------p~  253 (348)
T 1u5q_A          206 -PANSFVGTPYWMAPEVILAMDEGQYDGKV--DVWSL--------------GITCIELAERKP---------------PL  253 (348)
T ss_dssp             -SBCCCCSCGGGCCHHHHHTTSSCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             -CCCcccCCcceeCHhhhccccCCCCCcHH--HHHHH--------------HHHHHHHHhCCC---------------CC
Confidence             12345799999999998532246788888  99999              999999876654               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      ...+....+..+.....+.....            ..++...++|     .+||+.||++|||++|+++||||...
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~li-----~~~l~~dP~~Rps~~~ll~h~~~~~~  312 (348)
T 1u5q_A          254 FNMNAMSALYHIAQNESPALQSG------------HWSEYFRNFV-----DSCLQKIPQDRPTSEVLLKHRFVLRE  312 (348)
T ss_dssp             TTSCHHHHHHHHHHSCCCCCCCT------------TSCHHHHHHH-----HHHTCSSGGGSCCHHHHTTCHHHHSC
T ss_pred             CCCChHHHHHHHHhcCCCCCCCC------------CCCHHHHHHH-----HHHcccChhhCcCHHHHhhChhhhcc
Confidence            22222222222222222221111            1125667888     99999999999999999999999753

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.94  E-value=1.6e-28  Score=249.56  Aligned_cols=163  Identities=22%  Similarity=0.324  Sum_probs=114.5

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      +++.+++||+.||+|||++||+||||||+|||++ ++.+||+|||+|+.....                       ....
T Consensus       156 ~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~-----------------------~~~~  211 (390)
T 2zmd_A          156 ERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD-----------------------TTSV  211 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCC-----------------------Cccc
Confidence            6789999999999999999999999999999995 688999999999854321                       1111


Q ss_pred             CCcCcccccceecccccccc--------ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHh
Q psy7309          83 SHTGQVGTALYAAPELDSHG--------VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNI  154 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~--------~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i  154 (454)
                      .....+||+.|+|||++...        ....|+.++  ||||+              ||++|||++|.++         
T Consensus       212 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~--DiwSl--------------Gvil~ell~G~~P---------  266 (390)
T 2zmd_A          212 VKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKS--DVWSL--------------GCILYYMTYGKTP---------  266 (390)
T ss_dssp             --CCSCCCGGGCCHHHHHCC------------CCHHH--HHHHH--------------HHHHHHHHHSSCT---------
T ss_pred             cCCCCCcCCCccChHHhhhccccccccccccCCCChh--hHHHH--------------HHHHHHHHHCCCc---------
Confidence            23456899999999998621        123678888  99999              9999997766542         


Q ss_pred             hhcCCCCCCch-hhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         155 RRENGPSTGSN-VQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       155 ~~~~~p~~~~~-~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                            +.... ....+..+. ......+|..             .+..+.+||     ++||+.||++|||+.|+|+||
T Consensus       267 ------f~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~L~~dP~~Rps~~ell~hp  322 (390)
T 2zmd_A          267 ------FQQIINQISKLHAIIDPNHEIEFPDI-------------PEKDLQDVL-----KCCLKRDPKQRISIPELLAHP  322 (390)
T ss_dssp             ------TTTCCCHHHHHHHHHCTTSCCCCCCC-------------SCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSH
T ss_pred             ------chhhhHHHHHHHHHhCccccCCCCcc-------------chHHHHHHH-----HHHcccChhhCCCHHHHhhCc
Confidence                  22111 111111111 1122222322             125667888     999999999999999999999


Q ss_pred             ccccCC
Q psy7309         233 ISLEGS  238 (454)
Q Consensus       233 ~f~~~~  238 (454)
                      ||....
T Consensus       323 ~~~~~~  328 (390)
T 2zmd_A          323 YVQIQT  328 (390)
T ss_dssp             HHHSCC
T ss_pred             CccccC
Confidence            998644

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.94  E-value=1.7e-28  Score=242.82  Aligned_cols=164  Identities=23%  Similarity=0.350  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       105 ~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~-----------------------~~~  161 (323)
T 3tki_A          105 PDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN-----------------------NRE  161 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEET-----------------------TEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccC-----------------------Ccc
Confidence            468999999999999999999999999999999999999999999999754211                       112


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......+||+.|+|||++.   +..+ +.++  ||||+              ||++|+|++|+.               |
T Consensus       162 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~~--Diwsl--------------G~il~~ll~g~~---------------p  207 (323)
T 3tki_A          162 RLLNKMCGTLPYVAPELLK---RREFHAEPV--DVWSC--------------GIVLTAMLAGEL---------------P  207 (323)
T ss_dssp             CCBCSCCSCGGGSCHHHHH---CSSBCHHHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             cccCCCccCcCccCcHHhc---cCCCCCCcc--cHHHH--------------HHHHHHHHhCCC---------------C
Confidence            2334578999999999987   3444 6677  99999              999999776553               2


Q ss_pred             CCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +...... .....+... ....+.      |     ...++...+||     .+||+.||++|||++|+++||||.....
T Consensus       208 f~~~~~~~~~~~~~~~~-~~~~~~------~-----~~~~~~~~~li-----~~~L~~dP~~R~t~~eil~h~~~~~~~~  270 (323)
T 3tki_A          208 WDQPSDSCQEYSDWKEK-KTYLNP------W-----KKIDSAPLALL-----HKILVENPSARITIPDIKKDRWYNKPLK  270 (323)
T ss_dssp             CSSSCTTSHHHHHHHTT-CTTSTT------G-----GGSCHHHHHHH-----HHHSCSSTTTSCCHHHHTTCTTTTCCCC
T ss_pred             CCCCchHHHHHHHHhcc-cccCCc------c-----ccCCHHHHHHH-----HHHccCChhhCcCHHHHhhChhhccccc
Confidence            2211110 111111111 111111      1     11236667788     9999999999999999999999986544

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.94  E-value=5.7e-28  Score=243.52  Aligned_cols=177  Identities=29%  Similarity=0.388  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                           
T Consensus       144 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~---------------------------  196 (371)
T 4exu_A          144 EKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADA---------------------------  196 (371)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCccccccc---------------------------
Confidence            46889999999999999999999999999999999999999999999975421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                       .....+||+.|+|||++..  ...++.++  ||||+              ||++|+|++|+.     ...+.+...+..
T Consensus       197 -~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~el~~g~~pf~~~~~~~~~~~i~~~  257 (371)
T 4exu_A          197 -EMTGYVVTRWYRAPEVILS--WMHYNQTV--DIWSV--------------GCIMAEMLTGKTLFKGKDYLDQLTQILKV  257 (371)
T ss_dssp             ----CTTCCCTTSCHHHHSC--CSCCCTTH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             -CcCCcccCccccCHHHhcC--CCCCCcHH--hHHHH--------------HHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence             2344678999999999871  25788888  99999              999999776554     222333333332


Q ss_pred             cCCCCCC-------chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTG-------SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+.|...       .........+.......         |.... ...++.+.+||     ++||+.||++|||++|+|
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~li-----~~~L~~dP~~Rpt~~ell  322 (371)
T 4exu_A          258 TGVPGTEFVQKLNDKAAKSYIQSLPQTPRKD---------FTQLF-PRASPQAADLL-----EKMLELDVDKRLTAAQAL  322 (371)
T ss_dssp             HCCCCHHHHTTCSCHHHHHHHHHSCCCCCCC---------HHHHS-TTSCHHHHHHH-----HHHSCSCTTTSCCHHHHH
T ss_pred             hCCCcHHHHHHhhhhhhhhhhhccCCCcchh---------HHHhc-cccChHHHHHH-----HHHCCCChhhcCCHHHHh
Confidence            2222111       00011111111111111         11111 12246777888     999999999999999999


Q ss_pred             cCcccccCCC
Q psy7309         230 CQPISLEGSS  239 (454)
Q Consensus       230 ~hp~f~~~~~  239 (454)
                      +||||.....
T Consensus       323 ~hp~f~~~~~  332 (371)
T 4exu_A          323 THPFFEPFRD  332 (371)
T ss_dssp             TSGGGTTTCC
T ss_pred             cCcccccCCC
Confidence            9999986544

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.94  E-value=1.2e-28  Score=252.14  Aligned_cols=164  Identities=21%  Similarity=0.291  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.++.||+.||+|||++||+||||||+|||++.++++||+|||+|+....                        ...
T Consensus       162 ~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~------------------------~~~  217 (412)
T 2vd5_A          162 EMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRA------------------------DGT  217 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCT------------------------TSC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheeccC------------------------CCc
Confidence            35788999999999999999999999999999999999999999999975421                        111


Q ss_pred             CCCcCcccccceecccccccc----ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          82 TSHTGQVGTALYAAPELDSHG----VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~----~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                      ......+||+.|+|||++...    ....|+.++  ||||+              ||++|||++|++             
T Consensus       218 ~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~--DiwSl--------------GvilyelltG~~-------------  268 (412)
T 2vd5_A          218 VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPEC--DWWAL--------------GVFAYEMFYGQT-------------  268 (412)
T ss_dssp             EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHH--HHHHH--------------HHHHHHHHHSSC-------------
T ss_pred             cccceeccccCcCCHHHHhhcccCcCCCCCChHH--hhhHH--------------hHHHHHHHhCCC-------------
Confidence            123346899999999998621    124688888  99999              999999876654             


Q ss_pred             CCCCCCchhhhhhhhhccC-CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCC---CChhhhhcCcc
Q psy7309         158 NGPSTGSNVQKSLQKFQKS-PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKR---PSSEQNLCQPI  233 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~R---pta~e~l~hp~  233 (454)
                        |+.+.+......++... ....+|...          ...++.+.+||     ++||. +|.+|   ||++|+++|||
T Consensus       269 --Pf~~~~~~~~~~~i~~~~~~~~~p~~~----------~~~s~~~~dli-----~~lL~-~p~~Rlgr~~~~ei~~Hpf  330 (412)
T 2vd5_A          269 --PFYADSTAETYGKIVHYKEHLSLPLVD----------EGVPEEARDFI-----QRLLC-PPETRLGRGGAGDFRTHPF  330 (412)
T ss_dssp             --TTCCSSHHHHHHHHHTHHHHCCCC--------------CCCHHHHHHH-----HTTSS-CGGGCTTTTTHHHHHTSGG
T ss_pred             --CCCCCCHHHHHHHHHhcccCcCCCccc----------cCCCHHHHHHH-----HHHcC-ChhhcCCCCCHHHHhcCCC
Confidence              34443333333333211 111222211          11237788999     99999 99998   59999999999


Q ss_pred             ccc
Q psy7309         234 SLE  236 (454)
Q Consensus       234 f~~  236 (454)
                      |..
T Consensus       331 f~~  333 (412)
T 2vd5_A          331 FFG  333 (412)
T ss_dssp             GTT
T ss_pred             cCC
Confidence            974

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.94  E-value=1.9e-28  Score=258.46  Aligned_cols=171  Identities=29%  Similarity=0.404  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.+|++||+|||+|+....                         ..
T Consensus       289 ~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~-------------------------~~  343 (543)
T 3c4z_A          289 PRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKA-------------------------GQ  343 (543)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT-------------------------TC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccC-------------------------CC
Confidence            35788999999999999999999999999999999999999999999985421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       344 ~~~~~~~GT~~Y~APE~l~---~~~~~~~~--DiwSl--------------GvilyelltG~~---------------PF  389 (543)
T 3c4z_A          344 TKTKGYAGTPGFMAPELLL---GEEYDFSV--DYFAL--------------GVTLYEMIAARG---------------PF  389 (543)
T ss_dssp             CCBCCCCSCTTTSCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             cccccccCCccccChhhhc---CCCCChHH--hcCcc--------------hHHHHHHHhCCC---------------CC
Confidence            2234468999999999998   67889888  99999              999999876654               22


Q ss_pred             CCc----hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCc
Q psy7309         162 TGS----NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQP  232 (454)
Q Consensus       162 ~~~----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp  232 (454)
                      ...    ........+. .....+|...             ++.+.++|     ++||+.||++||+     ++|+++||
T Consensus       390 ~~~~~~~~~~~~~~~i~-~~~~~~p~~~-------------s~~~~~li-----~~lL~~dP~~R~~~~~~~a~ei~~Hp  450 (543)
T 3c4z_A          390 RARGEKVENKELKQRVL-EQAVTYPDKF-------------SPASKDFC-----EALLQKDPEKRLGFRDGSCDGLRTHP  450 (543)
T ss_dssp             CCTTCCCCHHHHHHHHH-HCCCCCCTTS-------------CHHHHHHH-----HHHSCSSGGGSCCCBTTBSHHHHTSG
T ss_pred             CCCccchhHHHHHHHHh-hcccCCCccc-------------CHHHHHHH-----HHhccCCHhHCCCCcccCHHHHHcCc
Confidence            221    1122222222 2233344332             36778888     9999999999996     58999999


Q ss_pred             ccccCCCCCCCccCccccccCCCCCC
Q psy7309         233 ISLEGSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       233 ~f~~~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                      ||..        ++|+.+......||
T Consensus       451 ff~~--------i~w~~l~~~~~~pp  468 (543)
T 3c4z_A          451 LFRD--------ISWRQLEAGMLTPP  468 (543)
T ss_dssp             GGTT--------CCHHHHHTTCSCCS
T ss_pred             cccC--------CCHHHHHcCCCCCC
Confidence            9984        45666654444333

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.94  E-value=1.6e-28  Score=260.10  Aligned_cols=169  Identities=29%  Similarity=0.397  Sum_probs=127.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.+|++||+|||+|+....                          .
T Consensus       286 ~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~--------------------------~  339 (576)
T 2acx_A          286 ARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPE--------------------------G  339 (576)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCT--------------------------T
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceeccc--------------------------C
Confidence            36789999999999999999999999999999999999999999999975421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+               |+
T Consensus       340 ~~~~~~~GT~~Y~APEvl~---~~~~~~~~--DiwSL--------------GvilyeLltG~~---------------PF  385 (576)
T 2acx_A          340 QTIKGRVGTVGYMAPEVVK---NERYTFSP--DWWAL--------------GCLLYEMIAGQS---------------PF  385 (576)
T ss_dssp             CCEECCCSCGGGCCHHHHT---TCEESSHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             ccccccCCCccccCHHHHc---CCCCCccc--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            2334568999999999998   66789888  99999              999999776654               22


Q ss_pred             CCch----hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCc
Q psy7309         162 TGSN----VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQP  232 (454)
Q Consensus       162 ~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp  232 (454)
                      ....    .......+. .....++..             .++.+.+||     ++||+.||.+||     |++|+++||
T Consensus       386 ~~~~~~~~~~~i~~~i~-~~~~~~p~~-------------~s~~~~dLI-----~~lL~~dP~~R~g~~~~sa~eil~Hp  446 (576)
T 2acx_A          386 QQRKKKIKREEVERLVK-EVPEEYSER-------------FSPQARSLC-----SQLLCKDPAERLGCRGGSAREVKEHP  446 (576)
T ss_dssp             SCSSSCCCHHHHHHHHH-HCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSTTCSSSHHHHHHTSG
T ss_pred             cccccchhHHHHHHHhh-cccccCCcc-------------CCHHHHHHH-----HHhccCCHHHcCCCCCCCHHHHHhCh
Confidence            2211    111122222 222333333             237788898     999999999999     789999999


Q ss_pred             ccccCCCCCCCccCccccccCCCCC
Q psy7309         233 ISLEGSSSGLSVLGSEQLLTCDHIP  257 (454)
Q Consensus       233 ~f~~~~~~~~~~~~~~~ll~~~~~~  257 (454)
                      ||..        ++|+.+......|
T Consensus       447 fF~~--------i~w~~l~~~~~~p  463 (576)
T 2acx_A          447 LFKK--------LNFKRLGAGMLEP  463 (576)
T ss_dssp             GGTT--------CCHHHHHTTCSCC
T ss_pred             hhcc--------CCHHHHhcCCCCC
Confidence            9984        4666665544333

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.94  E-value=2.3e-28  Score=244.05  Aligned_cols=161  Identities=25%  Similarity=0.347  Sum_probs=119.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-C---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-D---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      .+++.+++||+.||+|||++||+||||||+|||+... +   .+||+|||+++....                       
T Consensus       116 ~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~-----------------------  172 (342)
T 2qr7_A          116 REASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRA-----------------------  172 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBC-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcC-----------------------
Confidence            3688999999999999999999999999999998543 2   499999999985421                       


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                        ........+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|.+             
T Consensus       173 --~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~-------------  218 (342)
T 2qr7_A          173 --ENGLLMTPCYTANFVAPEVLE---RQGYDAAC--DIWSL--------------GVLLYTMLTGYT-------------  218 (342)
T ss_dssp             --TTCCBCCSSCCSSCCCHHHHH---HHHHHHHH--HHHHH--------------HHHHHHHHHSSC-------------
T ss_pred             --CCCceeccCCCccccCHHHhc---CCCCCCcc--CeeeH--------------hHHHHHHhcCCC-------------
Confidence              122334568999999999997   66788888  99999              999999776543             


Q ss_pred             CCCCCC---chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         158 NGPSTG---SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       158 ~~p~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                        |+..   ......+..+... ...++..    .|     ...++.+.+||     ++||..||++|||+.|+++||||
T Consensus       219 --Pf~~~~~~~~~~~~~~i~~~-~~~~~~~----~~-----~~~s~~~~~li-----~~~L~~dP~~R~t~~~il~hp~~  281 (342)
T 2qr7_A          219 --PFANGPDDTPEEILARIGSG-KFSLSGG----YW-----NSVSDTAKDLV-----SKMLHVDPHQRLTAALVLRHPWI  281 (342)
T ss_dssp             --SSCSSTTSCHHHHHHHHHHC-CCCCCST----TT-----TTSCHHHHHHH-----HHHTCSSTTTSCCHHHHTTSHHH
T ss_pred             --CCCCCCcCCHHHHHHHHccC-CcccCcc----cc-----ccCCHHHHHHH-----HHHCCCChhHCcCHHHHhcCCee
Confidence              2221   1222233333322 2222221    11     12347778888     99999999999999999999999


Q ss_pred             cc
Q psy7309         235 LE  236 (454)
Q Consensus       235 ~~  236 (454)
                      ..
T Consensus       282 ~~  283 (342)
T 2qr7_A          282 VH  283 (342)
T ss_dssp             HT
T ss_pred             cC
Confidence            64

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.94  E-value=4.4e-28  Score=242.26  Aligned_cols=183  Identities=24%  Similarity=0.345  Sum_probs=123.8

Q ss_pred             hHHHHHHHHHHHHHHHH--HcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           3 RAWRLLREIIEGLSHIH--SQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH--~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .++.++.|++.||.|||  ++||+||||||+|||++. ++.+||+|||+|.....                         
T Consensus       130 ~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~-------------------------  184 (360)
T 3e3p_A          130 LIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSP-------------------------  184 (360)
T ss_dssp             HHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCT-------------------------
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCC-------------------------
Confidence            57889999999999999  999999999999999997 88999999999975421                         


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHh
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNI  154 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i  154 (454)
                       .......+||+.|+|||++..  ...|+.++  ||||+              ||++|+|++|++     .....+...+
T Consensus       185 -~~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~ell~g~~pf~~~~~~~~~~~~~  245 (360)
T 3e3p_A          185 -SEPNVAYICSRYYRAPELIFG--NQHYTTAV--DIWSV--------------GCIFAEMMLGEPIFRGDNSAGQLHEIV  245 (360)
T ss_dssp             -TSCCCSTTSCGGGCCHHHHTT--CSSCCTHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHH
T ss_pred             -CCCcccccCCcceeCHHHHcC--CCCCCcHH--HHHHH--------------HHHHHHHHhCCCCcCCCChHHHHHHHH
Confidence             223345688999999999861  34578888  99999              999999776554     1222232332


Q ss_pred             hhcCCCCCCchhhhhhhhhccCC-CCCCCccccccccccccccc---cccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         155 RRENGPSTGSNVQKSLQKFQKSP-PSVYREWRSSFEWSTVRNNI---KSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       155 ~~~~~p~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...+.|..     ..+..+.... ...+. ......|.......   .++.+.+||     .+||+.||.+|||+.|+|+
T Consensus       246 ~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~L~~dP~~Rpt~~e~l~  314 (360)
T 3e3p_A          246 RVLGCPSR-----EVLRKLNPSHTDVDLY-NSKGIPWSNVFSDHSLKDAKEAYDLL-----SALLQYLPEERMKPYEALC  314 (360)
T ss_dssp             HHHCCCCH-----HHHHHHCTTCCCGGGG-CCCCCCHHHHTTTCCCTTHHHHHHHH-----HHHTCSSGGGSCCHHHHTT
T ss_pred             HHcCCCCH-----HHHHhcccchhhcccc-ccccCCcccccchhhccccHHHHHHH-----HHHhccCccccCCHHHHhc
Confidence            22222211     1111111000 00000 01112333322221   235667777     9999999999999999999


Q ss_pred             CcccccCCCC
Q psy7309         231 QPISLEGSSS  240 (454)
Q Consensus       231 hp~f~~~~~~  240 (454)
                      ||||.....+
T Consensus       315 hp~f~~~~~~  324 (360)
T 3e3p_A          315 HPYFDELHDP  324 (360)
T ss_dssp             SGGGGGGGCT
T ss_pred             CccccccCCc
Confidence            9999987654

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.94  E-value=2.7e-28  Score=241.45  Aligned_cols=162  Identities=26%  Similarity=0.388  Sum_probs=117.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.   ++.+||+|||++.....                        
T Consensus       131 ~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~------------------------  186 (327)
T 3lm5_A          131 NDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGH------------------------  186 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCC------------------------
Confidence            468899999999999999999999999999999997   78999999999985421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|+|||++.   +..++.++  ||||+              |+++|+|++++.              
T Consensus       187 --~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~~ll~g~~--------------  231 (327)
T 3lm5_A          187 --ACELREIMGTPEYLAPEILN---YDPITTAT--DMWNI--------------GIIAYMLLTHTS--------------  231 (327)
T ss_dssp             ---------CCCGGGCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --ccccccccCCcCccCCeeec---CCCCCchh--hHHHH--------------HHHHHHHHhCCC--------------
Confidence              11233468999999999997   67788888  99999              999999776543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       |+...........+..... .++...    +     ...++.+.++|     .+||+.||.+|||++|+|+||||+...
T Consensus       232 -pf~~~~~~~~~~~i~~~~~-~~~~~~----~-----~~~~~~~~~li-----~~~L~~dP~~Rpt~~~ll~h~~~~~~~  295 (327)
T 3lm5_A          232 -PFVGEDNQETYLNISQVNV-DYSEET----F-----SSVSQLATDFI-----QSLLVKNPEKRPTAEICLSHSWLQQWD  295 (327)
T ss_dssp             -SSCCSSHHHHHHHHHHTCC-CCCTTT----T-----TTSCHHHHHHH-----HHHSCSSGGGSCCHHHHTTCGGGCCCC
T ss_pred             -CCCCCCchHHHHHHHhccc-ccCchh----h-----cccCHHHHHHH-----HHHcCCChhhCcCHHHHhCCHhhcccc
Confidence             3333333322222221111 111110    0     11236667788     999999999999999999999998543

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.94  E-value=2e-27  Score=237.37  Aligned_cols=177  Identities=29%  Similarity=0.381  Sum_probs=120.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                           
T Consensus       126 ~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~---------------------------  178 (353)
T 3coi_A          126 EKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADA---------------------------  178 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCC---------------------------
Confidence            46889999999999999999999999999999999999999999999875321                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                       .....+||+.|+|||++..  ...++.++  ||||+              ||++|+|++|+..     ..+.+...+..
T Consensus       179 -~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~el~~g~~pf~~~~~~~~~~~i~~~  239 (353)
T 3coi_A          179 -EMTGYVVTRWYRAPEVILS--WMHYNQTV--DIWSV--------------GCIMAEMLTGKTLFKGKDYLDQLTQILKV  239 (353)
T ss_dssp             ------CCSBCCSCHHHHSC--CSCCCTTH--HHHHH--------------HHHHHHHHHSSCSSBSSCHHHHHHHHHHH
T ss_pred             -CccccccCcCcCCHHHHhC--cCCCCchh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence             2334678999999999872  25678888  99999              9999997665441     22233333222


Q ss_pred             cCCCCCC-------chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTG-------SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+.|...       .........+.......++...          ...++.+.++|     .+||+.||++|||++|++
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~li-----~~~L~~dp~~Rpt~~e~l  304 (353)
T 3coi_A          240 TGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLF----------PRASPQAADLL-----EKMLELDVDKRLTAAQAL  304 (353)
T ss_dssp             HCBCCHHHHTTCSCHHHHHHHHTSCBCSSCCTTTTC----------TTSCHHHHHHH-----HHHSCSCTTTSCCHHHHH
T ss_pred             hCCCCHHHHHHHhhHHHHHHHHhCcCCCCccHHHhc----------CCcCHHHHHHH-----HHHcCCCcccCCCHHHHh
Confidence            2222110       0011111112111111121111          12246777888     999999999999999999


Q ss_pred             cCcccccCCC
Q psy7309         230 CQPISLEGSS  239 (454)
Q Consensus       230 ~hp~f~~~~~  239 (454)
                      +||||.....
T Consensus       305 ~hp~f~~~~~  314 (353)
T 3coi_A          305 THPFFEPFRD  314 (353)
T ss_dssp             TSGGGTTTCC
T ss_pred             cCcchhhccC
Confidence            9999986544

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.94  E-value=3.5e-28  Score=234.79  Aligned_cols=163  Identities=26%  Similarity=0.412  Sum_probs=121.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC---eEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~---vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.   +||+|||++.....                        
T Consensus       105 ~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~------------------------  160 (284)
T 3kk8_A          105 ADASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVND------------------------  160 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCS------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEccc------------------------
Confidence            367899999999999999999999999999999987665   99999999875421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        ........||+.|+|||++.   +..++.++  ||||+              |+++|++++|+.              
T Consensus       161 --~~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~g~~--------------  205 (284)
T 3kk8_A          161 --SEAWHGFAGTPGYLSPEVLK---KDPYSKPV--DIWAC--------------GVILYILLVGYP--------------  205 (284)
T ss_dssp             --SCBCCCSCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CccccCCCCCcCCcCchhhc---CCCCCccc--chHHH--------------HHHHHHHHHCCC--------------
Confidence              12234467999999999998   66788888  99999              999999776543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       |+.+.........+.... ..++...    |     ...++...++|     .+||+.||++|||++|+++||||....
T Consensus       206 -pf~~~~~~~~~~~~~~~~-~~~~~~~----~-----~~~~~~~~~li-----~~~l~~dp~~Rps~~~~l~h~~~~~~~  269 (284)
T 3kk8_A          206 -PFWDEDQHRLYAQIKAGA-YDYPSPE----W-----DTVTPEAKSLI-----DSMLTVNPKKRITADQALKVPWICNRE  269 (284)
T ss_dssp             -SSCCSSHHHHHHHHHHTC-CCCCTTT----T-----TTSCHHHHHHH-----HHHSCSSTTTSCCHHHHTTSHHHHSCC
T ss_pred             -CCCCCchhHHHHHHHhcc-ccCCchh----h-----cccCHHHHHHH-----HHHcccChhhCCCHHHHhcCccccCCh
Confidence             333333333333332221 1122110    1     11236677888     999999999999999999999998654


Q ss_pred             C
Q psy7309         239 S  239 (454)
Q Consensus       239 ~  239 (454)
                      .
T Consensus       270 ~  270 (284)
T 3kk8_A          270 R  270 (284)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.94  E-value=3.4e-28  Score=235.80  Aligned_cols=158  Identities=31%  Similarity=0.393  Sum_probs=112.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE---ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl---~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||+|||++||+||||||+|||+   +.++.+||+|||++.....                        
T Consensus       124 ~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~------------------------  179 (285)
T 3is5_A          124 GYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKS------------------------  179 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCC------------------------
Confidence            3588999999999999999999999999999999   4457899999999975421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        ........||+.|+|||++.    ..++.++  ||||+              |+++|+|++|..              
T Consensus       180 --~~~~~~~~~t~~y~aPE~~~----~~~~~~~--Di~sl--------------G~il~~ll~g~~--------------  223 (285)
T 3is5_A          180 --DEHSTNAAGTALYMAPEVFK----RDVTFKC--DIWSA--------------GVVMYFLLTGCL--------------  223 (285)
T ss_dssp             ---------CTTGGGCCHHHHT----TCCCHHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --cccCcCcccccCcCChHHhc----cCCCccc--CeehH--------------HHHHHHHHhCCC--------------
Confidence              12234567999999999975    4577788  99999              999999766543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       |+.+............... .++...          ...++...++|     ++||+.||++|||+.|+|+||||++
T Consensus       224 -pf~~~~~~~~~~~~~~~~~-~~~~~~----------~~~~~~~~~li-----~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          224 -PFTGTSLEEVQQKATYKEP-NYAVEC----------RPLTPQAVDLL-----KQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             -SSCCSSHHHHHHHHHHCCC-CCCC------------CCCCHHHHHHH-----HHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             -CCCCCCHHHHHhhhccCCc-cccccc----------CcCCHHHHHHH-----HHHccCChhhCcCHHHHhcCHHhhc
Confidence             3333333332222221111 111111          11236667788     9999999999999999999999985

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.94  E-value=3.6e-28  Score=243.07  Aligned_cols=162  Identities=25%  Similarity=0.363  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+++.++.||+.||.|||++||+||||||+|||++.   ++.+||+|||+++....                        
T Consensus       148 ~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~------------------------  203 (349)
T 2w4o_A          148 RDAADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEH------------------------  203 (349)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCc------------------------
Confidence            468899999999999999999999999999999976   78999999999985421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|..              
T Consensus       204 --~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ell~g~~--------------  248 (349)
T 2w4o_A          204 --QVLMKTVCGTPGYCAPEILR---GCAYGPEV--DMWSV--------------GIITYILLCGFE--------------  248 (349)
T ss_dssp             -----------CGGGSCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --ccccccccCCCCccCHHHhc---CCCCCccc--chHHH--------------HHHHHHHHhCCC--------------
Confidence              12234568999999999998   66788888  99999              999999776543              


Q ss_pred             CCCCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+...... .....+........+..     |     ...+..+.+||     ++||+.||++|||+.|+|+||||...
T Consensus       249 -pf~~~~~~~~~~~~i~~~~~~~~~~~-----~-----~~~~~~~~~li-----~~~L~~dP~~Rpt~~e~l~hp~~~~~  312 (349)
T 2w4o_A          249 -PFYDERGDQFMFRRILNCEYYFISPW-----W-----DEVSLNAKDLV-----RKLIVLDPKKRLTTFQALQHPWVTGK  312 (349)
T ss_dssp             -TTCCTTCHHHHHHHHHTTCCCCCTTT-----T-----TTSCHHHHHHH-----HTTSCSSGGGSCCHHHHHHSTTTTST
T ss_pred             -CCCCCcccHHHHHHHHhCCCccCCch-----h-----hhCCHHHHHHH-----HHHccCChhhCcCHHHHhcCcccCCC
Confidence             22222111 12222222221111111     1     11236677888     99999999999999999999999854


Q ss_pred             C
Q psy7309         238 S  238 (454)
Q Consensus       238 ~  238 (454)
                      .
T Consensus       313 ~  313 (349)
T 2w4o_A          313 A  313 (349)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.94  E-value=4.2e-28  Score=253.18  Aligned_cols=161  Identities=30%  Similarity=0.475  Sum_probs=121.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.+++||+.||.|||++||+||||||+|||++.   ++.+||+|||+|+...                         
T Consensus       121 ~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~-------------------------  175 (486)
T 3mwu_A          121 HDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQ-------------------------  175 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECC-------------------------
Confidence            368899999999999999999999999999999954   4579999999997542                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                       ........+||+.|+|||++.    ..|+.++  ||||+              ||++|+|++|.+              
T Consensus       176 -~~~~~~~~~gt~~y~aPE~~~----~~~~~~~--Diwsl--------------G~il~~ll~g~~--------------  220 (486)
T 3mwu_A          176 -QNTKMKDRIGTAYYIAPEVLR----GTYDEKC--DVWSA--------------GVILYILLSGTP--------------  220 (486)
T ss_dssp             -CC----CCTTGGGGCCGGGGG----SCCCHHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             -CCCccCCCcCCCCCCCHHHhC----CCCCchh--hHHHH--------------HHHHHHHHhCCC--------------
Confidence             122344568999999999986    3588888  99999              999999776543              


Q ss_pred             CCCCCchhhhhhhhhccCCCC-CCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPS-VYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+.+.+....+..+...... ..|.      |.     ..++.+.+||     ++||+.||++|||+.|+|+||||...
T Consensus       221 -pf~~~~~~~~~~~i~~~~~~~~~~~------~~-----~~s~~~~~li-----~~~L~~dp~~R~t~~~~l~hp~~~~~  283 (486)
T 3mwu_A          221 -PFYGKNEYDILKRVETGKYAFDLPQ------WR-----TISDDAKDLI-----RKMLTFHPSLRITATQCLEHPWIQKY  283 (486)
T ss_dssp             -SSCCSSHHHHHHHHHHTCCCSCSGG------GG-----GSCHHHHHHH-----HHHTCSSTTTSCCHHHHHHCHHHHHT
T ss_pred             -CCCCCCHHHHHHHHHhCCCCCCCcc------cC-----CCCHHHHHHH-----HHHcCCChhhCcCHHHHhcCHhhccC
Confidence             44444444444444432211 1121      22     2346778888     99999999999999999999999875


Q ss_pred             CC
Q psy7309         238 SS  239 (454)
Q Consensus       238 ~~  239 (454)
                      ..
T Consensus       284 ~~  285 (486)
T 3mwu_A          284 SS  285 (486)
T ss_dssp             CC
T ss_pred             cc
Confidence            54

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.94  E-value=2.4e-28  Score=241.96  Aligned_cols=170  Identities=26%  Similarity=0.339  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+++...                         
T Consensus       106 ~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~-------------------------  160 (325)
T 3kn6_A          106 TEASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKP-------------------------  160 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecC-------------------------
Confidence            36889999999999999999999999999999998766   79999999997432                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      .........+||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|..+....-        
T Consensus       161 ~~~~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~~ll~g~~pf~~~~--------  213 (325)
T 3kn6_A          161 PDNQPLKTPCFTLHYAAPELLN---QNGYDESC--DLWSL--------------GVILYTMLSGQVPFQSHD--------  213 (325)
T ss_dssp             C-------------------------CCCCHHH--HHHHH--------------HHHHHHHHHSSCTTC-----------
T ss_pred             CCCCcccccCCCcCccCHHHhc---CCCCCCcc--chHHH--------------HHHHHHHHhCCCCCCCCc--------
Confidence            1122344568899999999997   67788888  99999              999999776654221100        


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ..............+... ...++..    .|.     ..++.+.+||     ++||+.||++|||++|+++||||....
T Consensus       214 ~~~~~~~~~~~~~~i~~~-~~~~~~~----~~~-----~~s~~~~~li-----~~~L~~dP~~Rpt~~ell~h~w~~~~~  278 (325)
T 3kn6_A          214 RSLTCTSAVEIMKKIKKG-DFSFEGE----AWK-----NVSQEAKDLI-----QGLLTVDPNKRLKMSGLRYNEWLQDGS  278 (325)
T ss_dssp             ----CCCHHHHHHHHTTT-CCCCCSH----HHH-----TSCHHHHHHH-----HHHHCCCTTTCCCTTTSTTCGGGCTTC
T ss_pred             cccccccHHHHHHHHHcC-CCCCCcc----ccc-----CCCHHHHHHH-----HHHCCCChhHCCCHHHHhcChhhccCc
Confidence            000011122233333322 2222221    121     2346777888     999999999999999999999998654

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.94  E-value=1.9e-28  Score=247.56  Aligned_cols=181  Identities=19%  Similarity=0.239  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCC-----------------------------------------
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYED-----------------------------------------   39 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~-----------------------------------------   39 (454)
                      ..++.++.||+.||+|||++ ||+||||||+|||++.++                                         
T Consensus       146 ~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (397)
T 1wak_A          146 PCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPL  225 (397)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------CCTTSCCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCccccccccccc
Confidence            46889999999999999998 999999999999998775                                         


Q ss_pred             --------CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccC
Q psy7309          40 --------HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFT  111 (454)
Q Consensus        40 --------~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~  111 (454)
                              .+||+|||+|....                            ......+||+.|+|||++.   +..|+.++
T Consensus       226 ~~~~~~~~~~kl~DfG~a~~~~----------------------------~~~~~~~gt~~y~aPE~~~---~~~~~~~~  274 (397)
T 1wak_A          226 EPKNAEKLKVKIADLGNACWVH----------------------------KHFTEDIQTRQYRSLEVLI---GSGYNTPA  274 (397)
T ss_dssp             SGGGGGGCCEEECCGGGCEETT----------------------------BCSCSCCSCGGGCCHHHHH---TSCCCTHH
T ss_pred             ccccccccceEecccccccccc----------------------------ccCccCCCCCcccCChhhc---CCCCCcHH
Confidence                    79999999997542                            1234458999999999998   66788888


Q ss_pred             CccccchhhhHHHHHHHHHhcceeeeeecCCchh-----------hHHHHHHHhhhcCCCCCCchhhhh-hhhhccCCCC
Q psy7309         112 PQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----------TLEELKHNIRRENGPSTGSNVQKS-LQKFQKSPPS  179 (454)
Q Consensus       112 ~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----------~~~~l~~~i~~~~~p~~~~~~~~~-~~~~~~~~~~  179 (454)
                        ||||+              ||++|||++|++.           ....+...+...+.++........ ...+. ....
T Consensus       275 --Diwsl--------------G~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~  337 (397)
T 1wak_A          275 --DIWST--------------ACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFF-TKKG  337 (397)
T ss_dssp             --HHHHH--------------HHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTB-CTTS
T ss_pred             --HHHHH--------------HHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhccccccccc-CCcc
Confidence              99999              8888887665431           222332222222222111000000 00000 0000


Q ss_pred             CCCcccccccccc---cc-----ccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         180 VYREWRSSFEWST---VR-----NNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       180 ~~p~~~~~~~~~~---~~-----~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ..........|..   +.     ....++.+.+||     .+||+.||++|||++|+|+||||.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~L~~dP~~Rpt~~e~l~hp~~~  396 (397)
T 1wak_A          338 DLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFL-----LPMLELIPEKRATAAECLRHPWLN  396 (397)
T ss_dssp             SBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHH-----GGGGCSSGGGSCCHHHHHTSGGGG
T ss_pred             ccccccccCCcchhHhhhhhcccchhhHHHHHHHH-----HHHhccChhhcCCHHHHhhCcccc
Confidence            0000000001100   00     011123455666     999999999999999999999996

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.94  E-value=1.7e-28  Score=247.88  Aligned_cols=159  Identities=26%  Similarity=0.299  Sum_probs=119.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE--ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI--DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl--~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .++.++.||+.||+|||++||+||||||+|||+  +.++.+||+|||+++....                          
T Consensus       188 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~--------------------------  241 (373)
T 2x4f_A          188 DTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKP--------------------------  241 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCT--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCC--------------------------
Confidence            578899999999999999999999999999999  5567899999999985421                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+||+.|+|||++.   +..++.++  ||||+              ||++|||++|..               |
T Consensus       242 ~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~elltg~~---------------p  287 (373)
T 2x4f_A          242 REKLKVNFGTPEFLAPEVVN---YDFVSFPT--DMWSV--------------GVIAYMLLSGLS---------------P  287 (373)
T ss_dssp             TCBCCCCCSSCTTCCHHHHT---TCBCCHHH--HHHHH--------------HHHHHHHHHSSC---------------T
T ss_pred             ccccccccCCCcEeChhhcc---CCCCCcHH--hHHHH--------------HHHHHHHHhCCC---------------C
Confidence            12233457999999999987   66788888  99999              999999776543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      +.+.+....+..+..... .++..    .|     ...++.+.+||     .+||+.||.+|||++|+|+||||..
T Consensus       288 f~~~~~~~~~~~i~~~~~-~~~~~----~~-----~~~~~~~~~li-----~~~L~~dp~~Rps~~e~l~hp~~~~  348 (373)
T 2x4f_A          288 FLGDNDAETLNNILACRW-DLEDE----EF-----QDISEEAKEFI-----SKLLIKEKSWRISASEALKHPWLSD  348 (373)
T ss_dssp             TCCSSHHHHHHHHHHTCC-CSCSG----GG-----TTSCHHHHHHH-----HTTSCSSGGGSCCHHHHHHSHHHHC
T ss_pred             CCCCCHHHHHHHHHhccC-CCChh----hh-----ccCCHHHHHHH-----HHHcCCChhhCCCHHHHhcCcCcCC
Confidence            333333333333322211 11111    01     11236777888     9999999999999999999999984

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.94  E-value=3.8e-28  Score=241.26  Aligned_cols=169  Identities=24%  Similarity=0.357  Sum_probs=119.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC--CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~--~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++  .+||+|||+|..+.....                     ..
T Consensus       169 ~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~---------------------~~  227 (345)
T 3hko_A          169 LISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNN---------------------GE  227 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTC---------------------C-
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccCCChhhEEEecCCCceEEEeeccccccccccCc---------------------cc
Confidence            5788999999999999999999999999999998776  899999999986532110                     11


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ........||+.|+|||++.. ....|+.++  ||||+              |+++|||++|+.               |
T Consensus       228 ~~~~~~~~gt~~y~aPE~~~~-~~~~~~~~~--Diwsl--------------G~il~el~~g~~---------------p  275 (345)
T 3hko_A          228 YYGMTTKAGTPYFVAPEVLNT-TNESYGPKC--DAWSA--------------GVLLHLLLMGAV---------------P  275 (345)
T ss_dssp             -------CCCGGGCCHHHHTC-SSSCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             cccccccCCCccccCchhhcc-CCCCCCcHH--HHHHH--------------HHHHHHHHHCCC---------------C
Confidence            123445689999999999862 135678888  99999              999999766543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +.+.........+..... .++..    .|     ...++.+.++|     .+||+.||.+|||+.|+|+||||.....
T Consensus       276 f~~~~~~~~~~~~~~~~~-~~~~~----~~-----~~~~~~~~~li-----~~~l~~~p~~Rps~~~~l~hp~~~~~~~  339 (345)
T 3hko_A          276 FPGVNDADTISQVLNKKL-CFENP----NY-----NVLSPLARDLL-----SNLLNRNVDERFDAMRALQHPWISQFSD  339 (345)
T ss_dssp             SCCSSHHHHHHHHHHCCC-CTTSG----GG-----GGSCHHHHHHH-----HHHSCSCTTTSCCHHHHHHSHHHHTTSS
T ss_pred             CCCCChHHHHHHHHhccc-ccCCc----cc-----ccCCHHHHHHH-----HHHcCCChhHCCCHHHHhcChhhccChH
Confidence            333333333333222211 11111    01     11236677888     9999999999999999999999986553

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.94  E-value=3.3e-28  Score=246.42  Aligned_cols=196  Identities=15%  Similarity=0.167  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||.+........                  ......
T Consensus       128 ~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~------------------~~~~~~  189 (389)
T 3gni_B          128 LAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQ------------------RQRVVH  189 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEETTE------------------ECSCBC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccccc------------------cccccc
Confidence            36889999999999999999999999999999999999999999999875421100                  000112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhH-----HHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTL-----EELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~-----~~l~~~i~~  156 (454)
                      ......+||+.|+|||++... ...|+.++  ||||+              ||++|||++|+++..     ..+...+..
T Consensus       190 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~~~--Diwsl--------------G~il~el~~g~~pf~~~~~~~~~~~~~~~  252 (389)
T 3gni_B          190 DFPKYSVKVLPWLSPEVLQQN-LQGYDAKS--DIYSV--------------GITACELANGHVPFKDMPATQMLLEKLNG  252 (389)
T ss_dssp             CCCTTCTTTGGGSCHHHHSTT-SSCBCTHH--HHHHH--------------HHHHHHHHHSSCTTTTCCSTTHHHHC---
T ss_pred             cccccccccccccCHHHHhcc-CCCCCcHh--HHHHH--------------HHHHHHHHHCCCCCCCCCHHHHHHHHhcC
Confidence            233445899999999998721 15688888  99999              999999776554211     011110000


Q ss_pred             cCCCCCCc---hhhhhh----hh-----hccC--CCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCC
Q psy7309         157 ENGPSTGS---NVQKSL----QK-----FQKS--PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKR  222 (454)
Q Consensus       157 ~~~p~~~~---~~~~~~----~~-----~~~~--~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~R  222 (454)
                      ........   ......    ..     +...  .....+...  ...........++.+.+||     ++||+.||++|
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~~~~~li-----~~~L~~dP~~R  325 (389)
T 3gni_B          253 TVPCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNG--DSPSHPYHRTFSPHFHHFV-----EQCLQRNPDAR  325 (389)
T ss_dssp             -------------------------------------------------------CCHHHHHHH-----HHHTCSCTTTS
T ss_pred             CCCccccccccccccccccccccccccccccccccCccccccC--CCCCCccccccCHHHHHHH-----HHHhhcCcccC
Confidence            00000000   000000    00     0000  000000000  0000001122346677788     99999999999


Q ss_pred             CChhhhhcCcccccCCC
Q psy7309         223 PSSEQNLCQPISLEGSS  239 (454)
Q Consensus       223 pta~e~l~hp~f~~~~~  239 (454)
                      ||++|+|+||||.....
T Consensus       326 pta~ell~hp~f~~~~~  342 (389)
T 3gni_B          326 PSASTLLNHSFFKQIKR  342 (389)
T ss_dssp             CCHHHHTTSGGGGGC--
T ss_pred             CCHHHHhcCHHHHHHhh
Confidence            99999999999987554

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.94  E-value=2.3e-28  Score=235.86  Aligned_cols=159  Identities=28%  Similarity=0.429  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++....                           .
T Consensus       109 ~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~---------------------------~  161 (279)
T 3fdn_A          109 QRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---------------------------S  161 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCC---------------------------c
Confidence            3678999999999999999999999999999999999999999999986432                           1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++|..               |+
T Consensus       162 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p~  207 (279)
T 3fdn_A          162 SRRTDLCGTLDYLPPEMIE---GRMHDEKV--DLWSL--------------GVLCYEFLVGKP---------------PF  207 (279)
T ss_dssp             ------CCCCTTCCHHHHT---TCCCCTTH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             ccccccCCCCCccCHhHhc---cCCCCccc--hhHhH--------------HHHHHHHHHCCC---------------CC
Confidence            1234457899999999987   66778888  99999              999999766543               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      ...........+.. ....+|..             .++...++|     .+||+.||++|||++|+++||||......
T Consensus       208 ~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~e~l~h~~~~~~~~~  267 (279)
T 3fdn_A          208 EANTYQETYKRISR-VEFTFPDF-------------VTEGARDLI-----SRLLKHNPSQRPMLREVLEHPWITANSSK  267 (279)
T ss_dssp             CCSSHHHHHHHHHH-TCCCCCTT-------------SCHHHHHHH-----HHHCCSSGGGSCCHHHHHHCHHHHHHCSS
T ss_pred             CCCcHHHHHHHHHh-CCCCCCCc-------------CCHHHHHHH-----HHHhccChhhCCCHHHHhhCccccCCccC
Confidence            33333333333332 22223332             226667888     99999999999999999999999976543

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.94  E-value=2.5e-28  Score=250.29  Aligned_cols=163  Identities=26%  Similarity=0.342  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+|+....                        
T Consensus       239 ~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~------------------------  294 (419)
T 3i6u_A          239 ATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGE------------------------  294 (419)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceecCC------------------------
Confidence            46889999999999999999999999999999997655   499999999985421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|+|||++.......|+.++  ||||+              ||++|+|++|.+              
T Consensus       295 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~--Diwsl--------------G~il~~lltg~~--------------  342 (419)
T 3i6u_A          295 --TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAV--DCWSL--------------GVILFICLSGYP--------------  342 (419)
T ss_dssp             ------------CTTCCTTTTC----CTTHHHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CccccccCCCCCccCceeeecCCCCCCCchh--hhHhH--------------HHHHHHHHHCCC--------------
Confidence              2233456899999999998633346788888  99999              999999776553              


Q ss_pred             CCCCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       |+...... .....+........+..     |     ...++.+.+||     ++||+.||++|||++|+|+||||..
T Consensus       343 -pf~~~~~~~~~~~~i~~~~~~~~~~~-----~-----~~~~~~~~~li-----~~~L~~dP~~Rps~~e~l~hp~~~~  405 (419)
T 3i6u_A          343 -PFSEHRTQVSLKDQITSGKYNFIPEV-----W-----AEVSEKALDLV-----KKLLVVDPKARFTTEEALRHPWLQD  405 (419)
T ss_dssp             -SSCCCSSSCCHHHHHHTTCCCCCHHH-----H-----TTSCHHHHHHH-----HHHSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             -CCCCCcchHHHHHHHhcCCCCCCchh-----h-----cccCHHHHHHH-----HHHccCChhHCcCHHHHhCCcccCC
Confidence             22222111 11112221111111111     1     12236677888     9999999999999999999999973

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.94  E-value=1e-28  Score=249.35  Aligned_cols=148  Identities=17%  Similarity=0.166  Sum_probs=113.0

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+...                            .
T Consensus       207 ~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~----------------------------~  258 (377)
T 3byv_A          207 ARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDG----------------------------A  258 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEETT----------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEechhheecC----------------------------C
Confidence            467899999999999999999999999999999999999999999997431                            1


Q ss_pred             CCcCcccccceeccccccccccc-----------cccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHH
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKA-----------MYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELK  151 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~-----------~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~  151 (454)
                      .....+| +.|+|||++.   +.           .|+.++  ||||+              ||++|||++|+.+      
T Consensus       259 ~~~~~~g-~~y~aPE~~~---~~~~~~~~~~~~~~~~~~~--DvwSl--------------G~il~elltg~~P------  312 (377)
T 3byv_A          259 RVVSSVS-RGFEPPELEA---RRATISYHRDRRTLMTFSF--DAWAL--------------GLVIYWIWCADLP------  312 (377)
T ss_dssp             EEECCCC-TTCCCHHHHH---HHTSTHHHHCCEEECCHHH--HHHHH--------------HHHHHHHHHSSCC------
T ss_pred             cccCCCC-cCccChhhhc---ccccccccccccccCChhh--hHHHH--------------HHHHHHHHHCCCC------
Confidence            2344577 9999999998   44           788888  99999              9999998776542      


Q ss_pred             HHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         152 HNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       152 ~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                               +.+.........+...     +             ...++...++|     .+||+.||++|||+.|+++|
T Consensus       313 ---------f~~~~~~~~~~~~~~~-----~-------------~~~~~~~~~li-----~~~L~~dp~~Rpt~~e~l~h  360 (377)
T 3byv_A          313 ---------ITKDAALGGSEWIFRS-----C-------------KNIPQPVRALL-----EGFLRYPKEDRLLPLQAMET  360 (377)
T ss_dssp             ---------C------CCSGGGGSS-----C-------------CCCCHHHHHHH-----HHHTCSSGGGCCCHHHHHTS
T ss_pred             ---------Ccccccccchhhhhhh-----c-------------cCCCHHHHHHH-----HHHcCCCchhCCCHHHHhhC
Confidence                     2221111111111100     0             11236677888     99999999999999999999


Q ss_pred             ccccc
Q psy7309         232 PISLE  236 (454)
Q Consensus       232 p~f~~  236 (454)
                      |||..
T Consensus       361 p~f~~  365 (377)
T 3byv_A          361 PEYEQ  365 (377)
T ss_dssp             HHHHH
T ss_pred             hHHHH
Confidence            99984

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.94  E-value=4.7e-28  Score=237.14  Aligned_cols=186  Identities=22%  Similarity=0.223  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       102 ~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------------------------~~  156 (311)
T 4agu_A          102 HLVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTG-------------------------PS  156 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccC-------------------------cc
Confidence            35889999999999999999999999999999999999999999999975421                         12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              |+++|++++|.++     ..+.+......
T Consensus       157 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~~l~~g~~p~~~~~~~~~~~~~~~~  218 (311)
T 4agu_A          157 DYYDDEVATRWYRSPELLVG--DTQYGPPV--DVWAI--------------GCVFAELLSGVPLWPGKSDVDQLYLIRKT  218 (311)
T ss_dssp             ---------GGGCCHHHHHT--CSCCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccCCCcCCccccChHHHhc--CCCCCcch--hhHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            22345689999999999861  35678888  99999              9999997665431     11222111111


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ................+........+....  .+.... ...++.+.+||     ++||+.||++|||++|+++||||..
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~li-----~~~L~~dP~~Rpt~~ell~hp~f~~  290 (311)
T 4agu_A          219 LGDLIPRHQQVFSTNQYFSGVKIPDPEDME--PLELKF-PNISYPALGLL-----KGCLHMDPTERLTCEQLLHHPYFEN  290 (311)
T ss_dssp             HCSCCHHHHHHHHTCGGGTTCCCCCCSSCC--CHHHHC-TTCCHHHHHHH-----HHHCCSSTTTSCCHHHHHTSGGGTT
T ss_pred             hcccccccccccccccccccCcCCCccccc--hhhhhc-ccccHHHHHHH-----HHHccCChhhcCCHHHHhcChHHHh
Confidence            111110000000000011111111111110  000000 12335566777     9999999999999999999999985


Q ss_pred             CC
Q psy7309         237 GS  238 (454)
Q Consensus       237 ~~  238 (454)
                      ..
T Consensus       291 ~~  292 (311)
T 4agu_A          291 IR  292 (311)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.94  E-value=2.6e-28  Score=254.47  Aligned_cols=161  Identities=29%  Similarity=0.447  Sum_probs=124.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE---ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl---~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.+++||+.||+|||++||+||||||+|||+   +.++.+||+|||+|+....                        
T Consensus       126 ~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~------------------------  181 (484)
T 3nyv_A          126 VDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEA------------------------  181 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEccc------------------------
Confidence            3678999999999999999999999999999999   4567899999999986521                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|+|||++.    +.|+.++  ||||+              ||++|+|++|.+              
T Consensus       182 --~~~~~~~~gt~~y~aPE~~~----~~~~~~~--Diwsl--------------G~il~~ll~g~~--------------  225 (484)
T 3nyv_A          182 --SKKMKDKIGTAYYIAPEVLH----GTYDEKC--DVWST--------------GVILYILLSGCP--------------  225 (484)
T ss_dssp             --CCSHHHHTTGGGTCCHHHHH----TCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --ccccccCCCCccccCceeec----CCCCCcc--eeHHH--------------HHHHHHHHHCCC--------------
Confidence              22344568999999999986    3688888  99999              999999776543              


Q ss_pred             CCCCCchhhhhhhhhccCCCC-CCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPS-VYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+.+.+....+..+...... ..|.      |.     ..++.+.+||     ++||+.||++|||++|+|+||||...
T Consensus       226 -pf~~~~~~~~~~~i~~~~~~~~~~~------~~-----~~s~~~~~li-----~~~L~~dp~~R~s~~e~l~h~~~~~~  288 (484)
T 3nyv_A          226 -PFNGANEYDILKKVEKGKYTFELPQ------WK-----KVSESAKDLI-----RKMLTYVPSMRISARDALDHEWIQTY  288 (484)
T ss_dssp             -SSCCSSHHHHHHHHHHCCCCCCSGG------GG-----GSCHHHHHHH-----HHHTCSSGGGSCCHHHHHTSHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHcCCCCCCCcc------cc-----cCCHHHHHHH-----HHHCCCChhHCcCHHHHhhChhhccc
Confidence             44444444444444433211 1121      21     2346778888     99999999999999999999999865


Q ss_pred             CC
Q psy7309         238 SS  239 (454)
Q Consensus       238 ~~  239 (454)
                      ..
T Consensus       289 ~~  290 (484)
T 3nyv_A          289 TK  290 (484)
T ss_dssp             TC
T ss_pred             cc
Confidence            43

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.94  E-value=4.1e-28  Score=241.35  Aligned_cols=164  Identities=21%  Similarity=0.223  Sum_probs=122.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       130 ~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~--------------------------~  183 (335)
T 3dls_A          130 PLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLER--------------------------G  183 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCT--------------------------T
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECCC--------------------------C
Confidence            36789999999999999999999999999999999999999999999975421                          2


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......+||+.|+|||++.   +..+ +.++  ||||+              ||++|+|+++..               |
T Consensus       184 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~~--Diwsl--------------G~il~el~~g~~---------------p  229 (335)
T 3dls_A          184 KLFYTFCGTIEYCAPEVLM---GNPYRGPEL--EMWSL--------------GVTLYTLVFEEN---------------P  229 (335)
T ss_dssp             CCBCEECSCGGGCCHHHHT---TCCBCSHHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             CceeccCCCccccChhhhc---CCCCCCCcc--cchhH--------------HHHHHHHHhCCC---------------c
Confidence            2334568999999999987   4555 6777  99999              999999766543               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      +....  ..   .  ......|..             .++.+.++|     .+||+.||++|||++|+++||||..... 
T Consensus       230 f~~~~--~~---~--~~~~~~~~~-------------~~~~l~~li-----~~~L~~dP~~Rps~~ell~hp~~~~~~~-  283 (335)
T 3dls_A          230 FCELE--ET---V--EAAIHPPYL-------------VSKELMSLV-----SGLLQPVPERRTTLEKLVTDPWVTQPVN-  283 (335)
T ss_dssp             CSSGG--GG---T--TTCCCCSSC-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHCTTTTCCCC-
T ss_pred             hhhHH--HH---H--hhccCCCcc-------------cCHHHHHHH-----HHHccCChhhCcCHHHHhcCccccCCcc-
Confidence            21110  00   0  111111111             236677888     9999999999999999999999986443 


Q ss_pred             CCCccCcccccc
Q psy7309         241 GLSVLGSEQLLT  252 (454)
Q Consensus       241 ~~~~~~~~~ll~  252 (454)
                       ...++|+++..
T Consensus       284 -~~~~~~~~~~~  294 (335)
T 3dls_A          284 -LADYTWEEVFR  294 (335)
T ss_dssp             -GGGCCHHHHC-
T ss_pred             -ccccCHHHHhh
Confidence             34455665554

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.94  E-value=4.1e-28  Score=233.74  Aligned_cols=160  Identities=29%  Similarity=0.406  Sum_probs=97.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       112 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~-------------------------~~  166 (278)
T 3cok_A          112 NEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKM-------------------------PH  166 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccC-------------------------CC
Confidence            46889999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+++++++               |+
T Consensus       167 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p~  212 (278)
T 3cok_A          167 EKHYTLCGTPNYISPEIAT---RSAHGLES--DVWSL--------------GCMFYTLLIGRP---------------PF  212 (278)
T ss_dssp             ----------------------------CT--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             CcceeccCCCCcCCcchhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            1223467999999999987   66778888  99999              999999766543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...........+.. .....|.             ..+....++|     .+||+.||++|||++|+++||||.....
T Consensus       213 ~~~~~~~~~~~~~~-~~~~~~~-------------~~~~~~~~li-----~~~l~~dp~~Rps~~~~l~h~~~~~~~~  271 (278)
T 3cok_A          213 DTDTVKNTLNKVVL-ADYEMPS-------------FLSIEAKDLI-----HQLLRRNPADRLSLSSVLDHPFMSRNSS  271 (278)
T ss_dssp             CCCSCC-----CCS-SCCCCCT-------------TSCHHHHHHH-----HHHSCSSGGGSCCHHHHTTSTTTC----
T ss_pred             CChhHHHHHHHHhh-cccCCcc-------------ccCHHHHHHH-----HHHcccCHhhCCCHHHHhcCccccCCCC
Confidence            22222222221111 1111222             1236667888     9999999999999999999999986543

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.94  E-value=5.4e-28  Score=238.41  Aligned_cols=160  Identities=24%  Similarity=0.364  Sum_probs=120.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC----CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED----HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~----~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++    .+||+|||++.....                       
T Consensus       115 ~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~-----------------------  171 (321)
T 2a2a_A          115 EEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIED-----------------------  171 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCT-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCc-----------------------
Confidence            46889999999999999999999999999999999888    799999999975421                       


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                         ........||+.|+|||++.   +..++.++  ||||+              |+++|+|++|..             
T Consensus       172 ---~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~-------------  216 (321)
T 2a2a_A          172 ---GVEFKNIFGTPEFVAPEIVN---YEPLGLEA--DMWSI--------------GVITYILLSGAS-------------  216 (321)
T ss_dssp             ---TCCCCCCCSCGGGCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSCC-------------
T ss_pred             ---cccccccCCCCCccCccccc---CCCCCCcc--ccHHH--------------HHHHHHHHHCCC-------------
Confidence               12234567999999999987   66788888  99999              999999776543             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                        |+.+......+..+... ...++...    +     ...++.+.++|     .+||+.||++|||++|+++||||..
T Consensus       217 --pf~~~~~~~~~~~i~~~-~~~~~~~~----~-----~~~~~~~~~li-----~~~l~~dp~~Rps~~e~l~hp~~~~  278 (321)
T 2a2a_A          217 --PFLGDTKQETLANITSV-SYDFDEEF----F-----SHTSELAKDFI-----RKLLVKETRKRLTIQEALRHPWITP  278 (321)
T ss_dssp             --SSCCSSHHHHHHHHHTT-CCCCCHHH----H-----TTCCHHHHHHH-----HTTSCSSTTTSCCHHHHHHSTTTSC
T ss_pred             --CCCCCCHHHHHHHHHhc-ccccChhh----h-----cccCHHHHHHH-----HHHcCCChhhCcCHHHHhcCccccC
Confidence              33333333333333322 12222111    0     12236677888     9999999999999999999999974

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.94  E-value=1.1e-27  Score=239.93  Aligned_cols=185  Identities=25%  Similarity=0.361  Sum_probs=117.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       134 ~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~--------------------------~  187 (362)
T 3pg1_A          134 QHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTA--------------------------D  187 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCTTC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEEEecCccccccc--------------------------c
Confidence            46889999999999999999999999999999999999999999999974321                          2


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      .......||+.|+|||++..  ...++.++  ||||+              ||++|++++|+.     .....+...+..
T Consensus       188 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~l~~g~~pf~~~~~~~~~~~i~~~  249 (362)
T 3pg1_A          188 ANKTHYVTHRWYRAPELVMQ--FKGFTKLV--DMWSA--------------GCVMAEMFNRKALFRGSTFYNQLNKIVEV  249 (362)
T ss_dssp             --------CGGGCCHHHHTT--CTTCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccceecccceecCcHHhcC--CCCCCcHh--HHHhH--------------HHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence            23345689999999999872  25678888  99999              999999766543     122223222222


Q ss_pred             cCCCCCCchhh---hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         157 ENGPSTGSNVQ---KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~~~---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      .+.|.......   .....+........+.    ..|..... ..++...+||     .+||+.||++|||++|+++|||
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~li-----~~~L~~dP~~Rpt~~ell~hp~  319 (362)
T 3pg1_A          250 VGTPKIEDVVMFSSPSARDYLRNSLSNVPA----RAWTAVVP-TADPVALDLI-----AKMLEFNPQRRISTEQALRHPY  319 (362)
T ss_dssp             HCCCCHHHHHHTSCHHHHHHTTTCCCCCCC----CCHHHHST-TSCHHHHHHH-----HHHTCSSGGGSCCHHHHHTSGG
T ss_pred             cCCCChHHhhhccchhhhHHHHhhcccCCh----hhHHhhCC-CCCHHHHHHH-----HHHhcCChhhCCCHHHHHcCch
Confidence            22222110000   0001111111111111    12222221 2236677777     9999999999999999999999


Q ss_pred             cccCCCC
Q psy7309         234 SLEGSSS  240 (454)
Q Consensus       234 f~~~~~~  240 (454)
                      |.....+
T Consensus       320 f~~~~~~  326 (362)
T 3pg1_A          320 FESLFDP  326 (362)
T ss_dssp             GTTTCCG
T ss_pred             hhhccCc
Confidence            9976543

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.94  E-value=6e-28  Score=238.37  Aligned_cols=184  Identities=21%  Similarity=0.292  Sum_probs=119.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++ .+||+|||+|+....                          
T Consensus       130 ~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~--------------------------  183 (330)
T 3nsz_A          130 YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHP--------------------------  183 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCT--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCC--------------------------
Confidence            35789999999999999999999999999999999777 899999999975421                          


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh------hHHHHHHHh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK------TLEELKHNI  154 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~------~~~~l~~~i  154 (454)
                      .......+||+.|+|||++..  ...++.++  ||||+              ||++|+|++|+.+      ..+.+....
T Consensus       184 ~~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~~ll~g~~p~~~~~~~~~~l~~~~  245 (330)
T 3nsz_A          184 GQEYNVRVASRYFKGPELLVD--YQMYDYSL--DMWSL--------------GCMLASMIFRKEPFFHGHDNYDQLVRIA  245 (330)
T ss_dssp             TCCCCSCCSCGGGCCHHHHTT--CCCCCTHH--HHHHH--------------HHHHHHHHHTCSSSSCCSSHHHHHHHHH
T ss_pred             CCccccccccccccChhhhcC--CCcCCchh--hHHHH--------------HHHHHHHHhCCCCcccCCchHHHHHHHH
Confidence            223345689999999999871  25688888  99999              9999997665431      122222211


Q ss_pred             hhcCCCCCCchhhhhhhhhccCCCCCCCc---ccccccccccc----ccccccchhHHHHHHHHhhhcCCCCCCCCChhh
Q psy7309         155 RRENGPSTGSNVQKSLQKFQKSPPSVYRE---WRSSFEWSTVR----NNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ  227 (454)
Q Consensus       155 ~~~~~p~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~~~~~~----~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e  227 (454)
                      ...+.+    ................+..   ......|....    ....++.+.+||     ++||+.||++|||++|
T Consensus       246 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~L~~dP~~Rpta~e  316 (330)
T 3nsz_A          246 KVLGTE----DLYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFL-----DKLLRYDHQSRLTARE  316 (330)
T ss_dssp             HHHCHH----HHHHHHHHTTCCCCTHHHHHHCCCCCCCGGGGCCTTTGGGCCHHHHHHH-----HTTSCSSGGGSCCHHH
T ss_pred             HhcCCc----hhhhHHHHhccccccchhhhhhhccccchhhhccccccccCCHHHHHHH-----HHHhcCCcccCCCHHH
Confidence            111100    0000000000000000000   00001121111    112346777888     9999999999999999


Q ss_pred             hhcCcccccCC
Q psy7309         228 NLCQPISLEGS  238 (454)
Q Consensus       228 ~l~hp~f~~~~  238 (454)
                      +|+||||....
T Consensus       317 ~l~hp~f~~~~  327 (330)
T 3nsz_A          317 AMEHPYFYTVV  327 (330)
T ss_dssp             HHTSGGGTTCC
T ss_pred             HhcCccHhhhc
Confidence            99999998543

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.94  E-value=3.6e-28  Score=245.82  Aligned_cols=96  Identities=24%  Similarity=0.371  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHHHHHH--HcCCcccCCCCCcEEEc--cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIH--SQGIIHRDLKPVNIFID--YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH--~~giiHrDLKp~NILl~--~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.++.|++.||.|||  +.||+||||||+|||++  .++.+||+|||+|+...                        
T Consensus       157 ~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~------------------------  212 (382)
T 2vx3_A          157 NLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLG------------------------  212 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETT------------------------
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecc------------------------
Confidence            467899999999999999  57999999999999995  46789999999997542                        


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                          ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++
T Consensus       213 ----~~~~~~~~t~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~elltg~~  256 (382)
T 2vx3_A          213 ----QRIYQYIQSRFYRSPEVLL---GMPYDLAI--DMWSL--------------GCILVEMHTGEP  256 (382)
T ss_dssp             ----CCCCSSCSCGGGCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSC
T ss_pred             ----cccccccCCccccChHHHc---CCCCCcHH--HHHHH--------------HHHHHHHHhCCC
Confidence                1234568999999999998   66788888  99999              999999776654

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.94  E-value=5.8e-28  Score=243.05  Aligned_cols=162  Identities=25%  Similarity=0.406  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++..+..                          .
T Consensus       200 ~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~--------------------------~  253 (365)
T 2y7j_A          200 KETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEP--------------------------G  253 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT--------------------------T
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccccCC--------------------------C
Confidence            36789999999999999999999999999999999999999999999875421                          2


Q ss_pred             CCCcCcccccceecccccccc---ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG---VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~---~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      ......+||+.|+|||++...   ....|+.++  ||||+              ||++|+|++|+.              
T Consensus       254 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~--Di~sl--------------G~il~ell~g~~--------------  303 (365)
T 2y7j_A          254 EKLRELCGTPGYLAPEILKCSMDETHPGYGKEV--DLWAC--------------GVILFTLLAGSP--------------  303 (365)
T ss_dssp             CCBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             cccccCCCCCCccChhhccccccccCcCCCchh--hHHhH--------------HHHHHHHHHCCC--------------
Confidence            233456899999999998521   123577788  99999              999999776553              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                       |+...........+.... ..++..    .|.     ..++...++|     ++||+.||++|||++|+|+||||.
T Consensus       304 -pf~~~~~~~~~~~i~~~~-~~~~~~----~~~-----~~~~~~~~li-----~~~L~~dP~~Rps~~ell~hp~f~  364 (365)
T 2y7j_A          304 -PFWHRRQILMLRMIMEGQ-YQFSSP----EWD-----DRSSTVKDLI-----SRLLQVDPEARLTAEQALQHPFFE  364 (365)
T ss_dssp             -SSCCSSHHHHHHHHHHTC-CCCCHH----HHS-----SSCHHHHHHH-----HHHSCSSTTTSCCHHHHHHSGGGC
T ss_pred             -CCCCCCHHHHHHHHHhCC-CCCCCc----ccc-----cCCHHHHHHH-----HHHcCCChhHCcCHHHHhcCcccC
Confidence             222222222222222111 111110    111     1235677888     999999999999999999999997

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.94  E-value=4e-28  Score=234.88  Aligned_cols=162  Identities=24%  Similarity=0.324  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||+|||++ ||+||||||+|||++.++.+||+|||++.....                          
T Consensus       109 ~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~--------------------------  162 (290)
T 3fme_A          109 DILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVD--------------------------  162 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcccccc--------------------------
Confidence            35789999999999999998 999999999999999999999999999986532                          


Q ss_pred             CCCCcCcccccceecccccccc-ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHG-VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~-~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ........||+.|+|||++... .+..++.++  ||||+              |+++|++++++.               
T Consensus       163 ~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------  211 (290)
T 3fme_A          163 DVAKDIDAGCKPYMAPERINPELNQKGYSVKS--DIWSL--------------GITMIELAILRF---------------  211 (290)
T ss_dssp             -------CCCCCCSCHHHHSCCTTC--CCHHH--HHHHH--------------HHHHHHHHHTSC---------------
T ss_pred             cccccccCCCccccChhhcChhhcCcCCCcHH--HHHHH--------------HHHHHHHHHCCC---------------
Confidence            1223334799999999997311 255678888  99999              999999766543               


Q ss_pred             CCCC--chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         160 PSTG--SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       160 p~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      |+..  .........+. ......+..            ..++...+++     .+||+.||++|||++|+++||||...
T Consensus       212 p~~~~~~~~~~~~~~~~-~~~~~~~~~------------~~~~~~~~li-----~~~l~~~p~~Rpt~~e~l~hp~f~~~  273 (290)
T 3fme_A          212 PYDSWGTPFQQLKQVVE-EPSPQLPAD------------KFSAEFVDFT-----SQCLKKNSKERPTYPELMQHPFFTLH  273 (290)
T ss_dssp             SSCCCSCHHHHHHHHHH-SCCCCCCTT------------TSCHHHHHHH-----HHHTCSSGGGSCCHHHHTTSHHHHHH
T ss_pred             CccccCchHHHHHHHhc-cCCCCcccc------------cCCHHHHHHH-----HHHhhcChhhCcCHHHHHhCcccccC
Confidence            2221  11111111111 222222211            1236667788     99999999999999999999999854


Q ss_pred             C
Q psy7309         238 S  238 (454)
Q Consensus       238 ~  238 (454)
                      .
T Consensus       274 ~  274 (290)
T 3fme_A          274 E  274 (290)
T ss_dssp             H
T ss_pred             c
Confidence            3

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.94  E-value=5.3e-28  Score=253.01  Aligned_cols=160  Identities=30%  Similarity=0.449  Sum_probs=121.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC---CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE---DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~---~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++..   +.+||+|||+|.....                        
T Consensus       136 ~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~------------------------  191 (494)
T 3lij_A          136 VDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFEN------------------------  191 (494)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBT------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCC------------------------
Confidence            3578999999999999999999999999999999764   4599999999975421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|+|||++.    ..|+.++  ||||+              ||++|+|++|.+              
T Consensus       192 --~~~~~~~~gt~~y~aPE~l~----~~~~~~~--Diwsl--------------G~il~~ll~g~~--------------  235 (494)
T 3lij_A          192 --QKKMKERLGTAYYIAPEVLR----KKYDEKC--DVWSI--------------GVILFILLAGYP--------------  235 (494)
T ss_dssp             --TBCBCCCCSCTTTCCHHHHT----TCBCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CccccccCCCcCeeCHHHHc----ccCCCch--hHHHH--------------HHHHHHHHhCCC--------------
Confidence              22344568999999999976    4588888  99999              999999776543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+.+......+..+..... .++..    .|.     ..++.+.+||     ++||+.||.+|||++|+|+||||...
T Consensus       236 -pf~~~~~~~~~~~i~~~~~-~~~~~----~~~-----~~s~~~~~li-----~~~L~~dp~~R~s~~e~l~hp~~~~~  298 (494)
T 3lij_A          236 -PFGGQTDQEILRKVEKGKY-TFDSP----EWK-----NVSEGAKDLI-----KQMLQFDSQRRISAQQALEHPWIKEM  298 (494)
T ss_dssp             -SSCCSSHHHHHHHHHHTCC-CCCSG----GGT-----TSCHHHHHHH-----HHHTCSSTTTSCCHHHHHTCHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHhCCC-CCCch----hcc-----cCCHHHHHHH-----HHHCCCChhhCccHHHHhcCcccccC
Confidence             4444444444444443222 22211    122     2336778888     99999999999999999999999864

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.94  E-value=1.8e-27  Score=237.22  Aligned_cols=191  Identities=23%  Similarity=0.308  Sum_probs=122.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++..........               .......
T Consensus       112 ~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~---------------~~~~~~~  176 (353)
T 2b9h_A          112 DHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADN---------------SEPTGQQ  176 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccccccccc---------------cCccccc
Confidence            4688999999999999999999999999999999999999999999998653211000               0000111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...++.++  ||||+              ||++|+|++|++.     ....+......
T Consensus       177 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~~l~~g~~pf~~~~~~~~~~~~~~~  238 (353)
T 2b9h_A          177 SGMVEFVATRWYRAPEVMLT--SAKYSRAM--DVWSC--------------GCILAELFLRRPIFPGRDYRHQLLLIFGI  238 (353)
T ss_dssp             ---CCCCCCGGGCCHHHHHS--CCCCCHHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cchhhccccccccCCeeecc--CCCccchh--hHHHH--------------HHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Confidence            22345689999999998762  35678888  99999              9999997765541     12222222222


Q ss_pred             cCCCCCCchh--------hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh
Q psy7309         157 ENGPSTGSNV--------QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN  228 (454)
Q Consensus       157 ~~~p~~~~~~--------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~  228 (454)
                      .+.|......        ......+..     .+..    .+.... ...++...++|     ++||+.||++|||++|+
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~----~~~~~~-~~~~~~~~~li-----~~~L~~dP~~Rpt~~el  303 (353)
T 2b9h_A          239 IGTPHSDNDLRCIESPRAREYIKSLPM-----YPAA----PLEKMF-PRVNPKGIDLL-----QRMLVFDPAKRITAKEA  303 (353)
T ss_dssp             HCCCCSTTTTTTCCCHHHHHHHHTSCC-----CCCC----CHHHHS-TTSCHHHHHHH-----HHHSCSSGGGSCCHHHH
T ss_pred             hCCCchhccccccccchhhHHhhcccC-----CCCc----chhhhc-ccCCHHHHHHH-----HHhcCcCcccCCCHHHH
Confidence            2333221110        111111110     0100    011111 12236677888     99999999999999999


Q ss_pred             hcCcccccCCCC
Q psy7309         229 LCQPISLEGSSS  240 (454)
Q Consensus       229 l~hp~f~~~~~~  240 (454)
                      ++||||.....+
T Consensus       304 l~hp~~~~~~~~  315 (353)
T 2b9h_A          304 LEHPYLQTYHDP  315 (353)
T ss_dssp             HTSGGGTTTCCT
T ss_pred             hcCccccccCCc
Confidence            999999876543

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.94  E-value=4.2e-28  Score=233.52  Aligned_cols=162  Identities=24%  Similarity=0.373  Sum_probs=120.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE---ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl---~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.|++.||+|||++||+||||||+|||+   +.++.+||+|||++.....                        
T Consensus       106 ~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~------------------------  161 (277)
T 3f3z_A          106 SDAARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKP------------------------  161 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCT------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccC------------------------
Confidence            4688999999999999999999999999999999   7788999999999875421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        ........||+.|+|||++.    ..++.++  ||||+              |+++|+|+++..              
T Consensus       162 --~~~~~~~~~t~~y~aPE~~~----~~~~~~~--Di~sl--------------G~~l~~l~~g~~--------------  205 (277)
T 3f3z_A          162 --GKMMRTKVGTPYYVSPQVLE----GLYGPEC--DEWSA--------------GVMMYVLLCGYP--------------  205 (277)
T ss_dssp             --TSCBCCCCSCTTTCCHHHHT----TCBCTTH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --ccchhccCCCCCccChHHhc----ccCCchh--hehhH--------------HHHHHHHHHCCC--------------
Confidence              22334567999999999986    3488888  99999              999999766543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       |+...........+... ...++..    .|     ...++...++|     .+||+.||++|||+.|+|+||||....
T Consensus       206 -p~~~~~~~~~~~~~~~~-~~~~~~~----~~-----~~~~~~~~~li-----~~~l~~dp~~R~s~~~~l~h~~~~~~~  269 (277)
T 3f3z_A          206 -PFSAPTDSEVMLKIREG-TFTFPEK----DW-----LNVSPQAESLI-----RRLLTKSPKQRITSLQALEHEWFEKQL  269 (277)
T ss_dssp             -SSCCSSHHHHHHHHHHC-CCCCCHH----HH-----TTSCHHHHHHH-----HHHTCSSTTTSCCHHHHTTSHHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHhC-CCCCCch----hh-----hcCCHHHHHHH-----HHHccCChhhCcCHHHHhcCHHHhccc
Confidence             33333333333333222 2222221    01     11236677888     999999999999999999999998644


Q ss_pred             C
Q psy7309         239 S  239 (454)
Q Consensus       239 ~  239 (454)
                      .
T Consensus       270 ~  270 (277)
T 3f3z_A          270 S  270 (277)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.94  E-value=8.2e-28  Score=232.51  Aligned_cols=158  Identities=22%  Similarity=0.340  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++....                           .
T Consensus       114 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~---------------------------~  166 (284)
T 2vgo_A          114 QRSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAP---------------------------S  166 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECS---------------------------S
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCc---------------------------c
Confidence            4678999999999999999999999999999999999999999999986432                           1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++|..               |+
T Consensus       167 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------pf  212 (284)
T 2vgo_A          167 LRRRTMCGTLDYLPPEMIE---GKTHDEKV--DLWCA--------------GVLCYEFLVGMP---------------PF  212 (284)
T ss_dssp             SCBCCCCSCGGGCCHHHHT---TCCBCTTH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             cccccccCCCCcCCHHHhc---cCCCCccc--chhhH--------------HHHHHHHHHCCC---------------CC
Confidence            1233467999999999988   56788888  99999              999999766543               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...........+. .....+|..             .++...++|     .+||+.||.+|||++|+++||||.....
T Consensus       213 ~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~ll~h~~~~~~~~  271 (284)
T 2vgo_A          213 DSPSHTETHRRIV-NVDLKFPPF-------------LSDGSKDLI-----SKLLRYHPPQRLPLKGVMEHPWVKANSR  271 (284)
T ss_dssp             CCSSHHHHHHHHH-TTCCCCCTT-------------SCHHHHHHH-----HHHSCSSGGGSCCHHHHHTCHHHHHHCC
T ss_pred             CCCCHhHHHHHHh-ccccCCCCc-------------CCHHHHHHH-----HHHhhcCHhhCCCHHHHhhCHHHHhhcc
Confidence            2222222222222 122233332             226667888     9999999999999999999999986554

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.94  E-value=7.4e-28  Score=239.33  Aligned_cols=185  Identities=22%  Similarity=0.283  Sum_probs=117.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE-------------------ccCCCeEEecccchhhhhhhcCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI-------------------DYEDHVKIGDFGLATNILQKHAGPLAR   62 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl-------------------~~~~~vKL~DFGla~~~~~~~~~~~~~   62 (454)
                      ..++.++.||+.||+|||++||+||||||+|||+                   +.++.+||+|||+++...         
T Consensus       123 ~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~---------  193 (355)
T 2eu9_A          123 PHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDH---------  193 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETT---------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCcccccc---------
Confidence            4688999999999999999999999999999999                   567889999999987432         


Q ss_pred             cccCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC
Q psy7309          63 ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD  142 (454)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~  142 (454)
                                         ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|
T Consensus       194 -------------------~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~g  235 (355)
T 2eu9_A          194 -------------------EHHTTIVATRHYRPPEVIL---ELGWAQPC--DVWSI--------------GCILFEYYRG  235 (355)
T ss_dssp             -------------------SCCCSSCSCGGGCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHS
T ss_pred             -------------------ccccCCcCCCcccCCeeee---cCCCCCcc--chHHH--------------HHHHHHHHhC
Confidence                               1234468999999999998   66788888  99999              9999997665


Q ss_pred             chh----hHHHHHHHhhhcCCCCCCchhhhhh-hhhccCCCCCCCccccc--------cccc--cccccccccchhHHHH
Q psy7309         143 RPK----TLEELKHNIRRENGPSTGSNVQKSL-QKFQKSPPSVYREWRSS--------FEWS--TVRNNIKSNFQHFLIL  207 (454)
Q Consensus       143 ~~~----~~~~l~~~i~~~~~p~~~~~~~~~~-~~~~~~~~~~~p~~~~~--------~~~~--~~~~~~~~~~~~~li~  207 (454)
                      ++.    ...+....+....++.+........ ..+.......++.....        ..+.  .......++.+.+|| 
T Consensus       236 ~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li-  314 (355)
T 2eu9_A          236 FTLFQTHENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLM-  314 (355)
T ss_dssp             SCSCCCSSHHHHHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHH-
T ss_pred             CCCCCCCCHHHHHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHHHHH-
Confidence            541    1111111222222222211110000 00000000000000000        0000  000011123455666 


Q ss_pred             HHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         208 IHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       208 ~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                          ++||+.||++|||++|+|+||||....
T Consensus       315 ----~~~L~~dP~~Rpt~~e~l~hp~f~~~~  341 (355)
T 2eu9_A          315 ----RRMLEFDPAQRITLAEALLHPFFAGLT  341 (355)
T ss_dssp             ----HHHTCSSTTTSCCHHHHTTSGGGGGCC
T ss_pred             ----HHHhcCChhhCcCHHHHhcChhhcCCC
Confidence                999999999999999999999998643

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.94  E-value=1.7e-27  Score=231.39  Aligned_cols=161  Identities=29%  Similarity=0.383  Sum_probs=123.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       115 ~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~-------------------------~~  169 (294)
T 2rku_A          115 PEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY-------------------------DG  169 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCS-------------------------TT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceeccc-------------------------Cc
Confidence            46889999999999999999999999999999999999999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++|+.               |+
T Consensus       170 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~g~~---------------p~  215 (294)
T 2rku_A          170 ERKKVLCGTPNYIAPEVLS---KKGHSFEV--DVWSI--------------GCIMYTLLVGKP---------------PF  215 (294)
T ss_dssp             CCBCCCCSCCSSCCHHHHT---TSCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             cccccccCCCCcCCcchhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            2234467999999999987   56678888  99999              999999776543               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      ...........+.. ....+|...             ++...+++     .+||+.||++|||++|+++||||.....+
T Consensus       216 ~~~~~~~~~~~~~~-~~~~~~~~~-------------~~~~~~li-----~~~l~~~p~~Rps~~~ll~~~~~~~~~~~  275 (294)
T 2rku_A          216 ETSCLKETYLRIKK-NEYSIPKHI-------------NPVAASLI-----QKMLQTDPTARPTINELLNDEFFTSGYIP  275 (294)
T ss_dssp             CCSSHHHHHHHHHT-TCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCGGGGGGSHHHHTSCCC
T ss_pred             CCCCHHHHHHHHhh-ccCCCcccc-------------CHHHHHHH-----HHHcccChhhCcCHHHHhhChheecCCcC
Confidence            33333333333322 222333321             25667788     99999999999999999999999976554

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.94  E-value=1.3e-27  Score=237.36  Aligned_cols=161  Identities=29%  Similarity=0.387  Sum_probs=123.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       141 ~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~-------------------------~~  195 (335)
T 2owb_A          141 PEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEY-------------------------DG  195 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCS-------------------------TT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceeccc-------------------------Cc
Confidence            46889999999999999999999999999999999999999999999975421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++|+.               |+
T Consensus       196 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------pf  241 (335)
T 2owb_A          196 ERKKVLCGTPNYIAPEVLS---KKGHSFEV--DVWSI--------------GCIMYTLLVGKP---------------PF  241 (335)
T ss_dssp             CCBCCCCSCCSSCCHHHHH---TSCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             ccccccCCCccccCHHHhc---cCCCCchh--hHHHH--------------HHHHHHHHHCcC---------------CC
Confidence            2234567999999999987   56778888  99999              999999766543               23


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      ...........+... ...++...             ++...++|     ++||+.||++|||++|+++||||.....+
T Consensus       242 ~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~~~~li-----~~~l~~dp~~Rps~~ell~~~~~~~~~~~  301 (335)
T 2owb_A          242 ETSCLKETYLRIKKN-EYSIPKHI-------------NPVAASLI-----QKMLQTDPTARPTINELLNDEFFTSGYIP  301 (335)
T ss_dssp             CCSSHHHHHHHHHHT-CCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCGGGGGGSHHHHTSCCC
T ss_pred             CCCCHHHHHHHHhcC-CCCCCccC-------------CHHHHHHH-----HHHccCChhHCcCHHHHhcCccccCCCcc
Confidence            332222222222211 22233321             25667788     99999999999999999999999977654

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.94  E-value=1.2e-27  Score=235.58  Aligned_cols=178  Identities=25%  Similarity=0.378  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       120 ~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~--------------------------~  173 (326)
T 1blx_A          120 ETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSF--------------------------Q  173 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCG--------------------------G
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCcccccccC--------------------------C
Confidence            46789999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+++++++.     ....+...+..
T Consensus       174 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~pf~~~~~~~~~~~i~~~  234 (326)
T 1blx_A          174 MALTSVVVTLWYRAPEVLL---QSSYATPV--DLWSV--------------GCIFAEMFRRKPLFRGSSDVDQLGKILDV  234 (326)
T ss_dssp             GGGCCCCCCCTTCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             CCccccccccceeCHHHHh---cCCCCcch--hHHHH--------------HHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence            1233467899999999998   56788888  99999              9999997765541     12222222222


Q ss_pred             cCCCCCCchhhh-h--hhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         157 ENGPSTGSNVQK-S--LQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~~~~-~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      ...|........ .  ...+.......         +.... ...++...+||     .+||+.||.+|||+.|+++|||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~~~~li-----~~~L~~dP~~Rpt~~e~l~hp~  299 (326)
T 1blx_A          235 IGLPGEEDWPRDVALPRQAFHSKSAQP---------IEKFV-TDIDELGKDLL-----LKCLTFNPAKRISAYSALSHPY  299 (326)
T ss_dssp             HCCCCGGGSCTTCSSCGGGSCCCCCCC---------GGGTC-CSCCHHHHHHH-----HHHSCSSTTTSCCHHHHHTSGG
T ss_pred             cCCCCcccCccccccchhhhcccCcch---------hhhcc-ccCCHHHHHHH-----HHHcCCCcccCCCHHHHhcCcc
Confidence            222211100000 0  00000000000         00011 12336667788     9999999999999999999999


Q ss_pred             cccCCC
Q psy7309         234 SLEGSS  239 (454)
Q Consensus       234 f~~~~~  239 (454)
                      |.....
T Consensus       300 ~~~~~~  305 (326)
T 1blx_A          300 FQDLER  305 (326)
T ss_dssp             GTTCCC
T ss_pred             ccccch
Confidence            986543

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.94  E-value=1.1e-27  Score=236.22  Aligned_cols=176  Identities=26%  Similarity=0.322  Sum_probs=117.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-------------------CCCeEEecccchhhhhhhcCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-------------------EDHVKIGDFGLATNILQKHAGPLAR   62 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-------------------~~~vKL~DFGla~~~~~~~~~~~~~   62 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.                   ++.+||+|||++....         
T Consensus       118 ~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~---------  188 (339)
T 1z57_A          118 DHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDD---------  188 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETT---------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCc---------
Confidence            468899999999999999999999999999999987                   5679999999987432         


Q ss_pred             cccCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC
Q psy7309          63 ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD  142 (454)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~  142 (454)
                                         ......+||+.|+|||++.   +..|+.++  ||||+              ||++||+++|
T Consensus       189 -------------------~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~g  230 (339)
T 1z57_A          189 -------------------EHHSTLVSTRHYRAPEVIL---ALGWSQPC--DVWSI--------------GCILIEYYLG  230 (339)
T ss_dssp             -------------------SCCCSSCSCGGGCCHHHHT---TSCCCTHH--HHHHH--------------HHHHHHHHHS
T ss_pred             -------------------cccccccCCccccChHHhh---CCCCCcch--hhHHH--------------HHHHHHHHhC
Confidence                               1233468999999999998   66788888  99999              9999997665


Q ss_pred             chh----hHHHHHHHhhhcCCCCCCchhhhhhh-hhccCCCCCCCccccccccccc-------------------ccccc
Q psy7309         143 RPK----TLEELKHNIRRENGPSTGSNVQKSLQ-KFQKSPPSVYREWRSSFEWSTV-------------------RNNIK  198 (454)
Q Consensus       143 ~~~----~~~~l~~~i~~~~~p~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~-------------------~~~~~  198 (454)
                      ...    ...+....+....++.+......... .+.....         ..|...                   .....
T Consensus       231 ~~pf~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (339)
T 1z57_A          231 FTVFPTHDSKEHLAMMERILGPLPKHMIQKTRKRKYFHHDR---------LDWDEHSSAGRYVSRACKPLKEFMLSQDVE  301 (339)
T ss_dssp             SCSCCCSCHHHHHHHHHHHHCSCCHHHHHHCSCGGGEETTE---------ECCCTTSHHHHHHHHHCCCGGGGCSCCSHH
T ss_pred             CCCCCCCChHHHHHHHHHHhCCCCHHHHhhccchhHHhhcc---------ccccccccccchhhhcCcchhhhcccchhh
Confidence            431    11111112222222222111110000 0000000         111100                   00111


Q ss_pred             ccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         199 SNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       199 ~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ++.+.+||     .+||+.||.+|||++|+++||||....
T Consensus       302 ~~~l~~li-----~~~L~~dP~~Rpt~~ell~hp~f~~~~  336 (339)
T 1z57_A          302 HERLFDLI-----QKMLEYDPAKRITLREALKHPFFDLLK  336 (339)
T ss_dssp             HHHHHHHH-----HHHTCSSTTTSCCHHHHTTSGGGGGGG
T ss_pred             HHHHHHHH-----HHHhCcCcccccCHHHHhcCHHHHHHh
Confidence            24455666     999999999999999999999998543

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.94  E-value=7.6e-28  Score=241.23  Aligned_cols=164  Identities=24%  Similarity=0.319  Sum_probs=115.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++.....                        ..
T Consensus       159 ~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~------------------------~~  214 (355)
T 1vzo_A          159 HEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVAD------------------------ET  214 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGG------------------------GG
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccC------------------------CC
Confidence            367889999999999999999999999999999999999999999999754221                        11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++..+ ...++.++  ||||+              ||++|||++|+.+..           ...
T Consensus       215 ~~~~~~~gt~~y~aPE~~~~~-~~~~~~~~--Dvwsl--------------G~il~ell~g~~pf~-----------~~~  266 (355)
T 1vzo_A          215 ERAYDFCGTIEYMAPDIVRGG-DSGHDKAV--DWWSL--------------GVLMYELLTGASPFT-----------VDG  266 (355)
T ss_dssp             GGGCGGGSCCTTCCHHHHTTC-C---CTHH--HHHHH--------------HHHHHHHHHSSCTTS-----------CTT
T ss_pred             CcccCcccCcCccChhhhcCC-CCCCCchh--hHHHH--------------HHHHHHHHHCCCCCc-----------cCC
Confidence            123346899999999998721 23467777  99999              999999776553210           000


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      ...........+. .....++...             ++...++|     .+||+.||++||     |++|+++||||..
T Consensus       267 ~~~~~~~~~~~~~-~~~~~~~~~~-------------~~~~~~li-----~~~L~~dP~~R~~~~~~s~~ell~h~~f~~  327 (355)
T 1vzo_A          267 EKNSQAEISRRIL-KSEPPYPQEM-------------SALAKDLI-----QRLLMKDPKKRLGCGPRDADEIKEHLFFQK  327 (355)
T ss_dssp             SCCCHHHHHHHHH-HCCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSTTSSTTTHHHHHTSGGGTT
T ss_pred             ccchHHHHHHHHh-ccCCCCCccc-------------CHHHHHHH-----HHHhhhCHHHhcCCCCCCHHHHHcCcchhc
Confidence            0011111122222 1222233322             25667788     999999999999     9999999999985

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.94  E-value=7.1e-28  Score=236.40  Aligned_cols=173  Identities=25%  Similarity=0.313  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC---eEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~---vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.   +||+|||++..........                  .
T Consensus       111 ~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~------------------~  172 (316)
T 2ac3_A          111 LEASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCS------------------P  172 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccc------------------c
Confidence            367899999999999999999999999999999998776   9999999987543210000                  0


Q ss_pred             cCCCCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                      .........+||+.|+|||++...  ....|+.++  ||||+              ||++|||++|+++           
T Consensus       173 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~--Diwsl--------------G~il~~l~~g~~p-----------  225 (316)
T 2ac3_A          173 ISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRC--DLWSL--------------GVILYILLSGYPP-----------  225 (316)
T ss_dssp             ---------CCSGGGCCHHHHHHTSHHHHHHTTTH--HHHHH--------------HHHHHHHHHSSCS-----------
T ss_pred             ccccccccccCCcCccChHHhhcccccccCCCccc--ccHhH--------------HHHHHHHHHCCCC-----------
Confidence            011223346799999999998621  125678888  99999              9999997765532           


Q ss_pred             cCCCCCCch---------------hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC
Q psy7309         157 ENGPSTGSN---------------VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK  221 (454)
Q Consensus       157 ~~~p~~~~~---------------~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~  221 (454)
                          +.+..               .......+. .....+|..    .|     ...++.+.+||     ++||+.||++
T Consensus       226 ----f~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~----~~-----~~~~~~~~~li-----~~~L~~dP~~  286 (316)
T 2ac3_A          226 ----FVGRCGSDCGWDRGEACPACQNMLFESIQ-EGKYEFPDK----DW-----AHISCAAKDLI-----SKLLVRDAKQ  286 (316)
T ss_dssp             ----CCCCCCSCSCC----CCHHHHHHHHHHHH-HCCCCCCHH----HH-----TTSCHHHHHHH-----HHHSCSSTTT
T ss_pred             ----CcccccccccccccccchhHHHHHHHHHh-ccCcccCch----hc-----ccCCHHHHHHH-----HHHhhCChhh
Confidence                11110               011122222 122222221    01     11236677888     9999999999


Q ss_pred             CCChhhhhcCcccccCC
Q psy7309         222 RPSSEQNLCQPISLEGS  238 (454)
Q Consensus       222 Rpta~e~l~hp~f~~~~  238 (454)
                      |||++|+|+||||....
T Consensus       287 Rps~~e~l~hp~~~~~~  303 (316)
T 2ac3_A          287 RLSAAQVLQHPWVQGCA  303 (316)
T ss_dssp             SCCHHHHHHSTTCC---
T ss_pred             CCCHHHHhcChhhcCCC
Confidence            99999999999998543

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.94  E-value=1.7e-27  Score=235.81  Aligned_cols=184  Identities=27%  Similarity=0.333  Sum_probs=116.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....                         ..
T Consensus       124 ~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~-------------------------~~  178 (331)
T 4aaa_A          124 QVVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAA-------------------------PG  178 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecC-------------------------Cc
Confidence            46889999999999999999999999999999999999999999999975532                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...++.++  ||||+              ||++|+|++|++     .....+...+..
T Consensus       179 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~~l~~g~~pf~~~~~~~~~~~~~~~  240 (331)
T 4aaa_A          179 EVYDDEVATRWYRAPELLVG--DVKYGKAV--DVWAI--------------GCLVTEMFMGEPLFPGDSDIDQLYHIMMC  240 (331)
T ss_dssp             -----CCCCCTTCCHHHHTT--CTTCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccCCCcCCccccCcccccC--CCCcchHH--HHHHH--------------HHHHHHHHhCCCCCCCCCcHHHHHHHHHH
Confidence            22344678999999999871  24678888  99999              999999776554     122222222221


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.+.+.  ....+..........++.......+.... ...++...+||     .+||+.||++|||++|+|+||||+.
T Consensus       241 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~li-----~~~L~~dP~~Rpt~~ell~hp~f~~  312 (331)
T 4aaa_A          241 LGNLIPR--HQELFNKNPVFAGVRLPEIKEREPLERRY-PKLSEVVIDLA-----KKCLHIDPDKRPFCAELLHHDFFQM  312 (331)
T ss_dssp             HCSCCHH--HHHHHHHCGGGTTCCCCCCSSCCCHHHHS-TTSCHHHHHHH-----HHHTCSSGGGSCCGGGGGGSHHHHG
T ss_pred             hCCCChh--hhhHhhhccccccccCccccccchhhhcc-cchhHHHHHHH-----HHHhccCcccCCCHHHHhcCchhcc
Confidence            1111110  01111110001111112111101111111 12236667777     9999999999999999999999985

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.94  E-value=1.4e-27  Score=230.04  Aligned_cols=154  Identities=24%  Similarity=0.287  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-------------------CCeEEecccchhhhhhhcCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-------------------DHVKIGDFGLATNILQKHAGPLAR   62 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-------------------~~vKL~DFGla~~~~~~~~~~~~~   62 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.+                   ..+||+|||++.....        
T Consensus       115 ~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~--------  186 (289)
T 1x8b_A          115 AELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISS--------  186 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTC--------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCC--------
Confidence            4688999999999999999999999999999999844                   4799999999875421        


Q ss_pred             cccCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC
Q psy7309          63 ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD  142 (454)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~  142 (454)
                                           .....||+.|+|||++..  ...++.++  ||||+              |+++|+++++
T Consensus       187 ---------------------~~~~~gt~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~~l~~~  227 (289)
T 1x8b_A          187 ---------------------PQVEEGDSRFLANEVLQE--NYTHLPKA--DIFAL--------------ALTVVCAAGA  227 (289)
T ss_dssp             ---------------------SCCCCCCGGGCCHHHHTT--CCTTHHHH--HHHHH--------------HHHHHHHTTC
T ss_pred             ---------------------ccccCCCccccChhHhcC--CCCCCchh--hHHHH--------------HHHHHHHhcC
Confidence                                 122459999999999872  23566677  99999              9999998776


Q ss_pred             chhhHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCC
Q psy7309         143 RPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKR  222 (454)
Q Consensus       143 ~~~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~R  222 (454)
                      .+.               +....   ....+.......+|..             .++...++|     .+||+.||++|
T Consensus       228 ~~~---------------~~~~~---~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~dp~~R  271 (289)
T 1x8b_A          228 EPL---------------PRNGD---QWHEIRQGRLPRIPQV-------------LSQEFTELL-----KVMIHPDPERR  271 (289)
T ss_dssp             CCC---------------CSSSH---HHHHHHTTCCCCCSSC-------------CCHHHHHHH-----HHHTCSSGGGS
T ss_pred             CCC---------------Ccchh---HHHHHHcCCCCCCCcc-------------cCHHHHHHH-----HHHhCCCcccC
Confidence            541               11111   1111111222233332             236677888     99999999999


Q ss_pred             CChhhhhcCcccccCC
Q psy7309         223 PSSEQNLCQPISLEGS  238 (454)
Q Consensus       223 pta~e~l~hp~f~~~~  238 (454)
                      ||+.|+++||||....
T Consensus       272 ps~~~ll~h~~~~~~~  287 (289)
T 1x8b_A          272 PSAMALVKHSVLLSAS  287 (289)
T ss_dssp             CCHHHHHTCTTC----
T ss_pred             CCHHHHhhChHhhhhc
Confidence            9999999999998643

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.94  E-value=1e-27  Score=251.39  Aligned_cols=162  Identities=30%  Similarity=0.444  Sum_probs=124.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++   .+||+|||+|.....                        
T Consensus       146 ~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~------------------------  201 (504)
T 3q5i_A          146 CDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSK------------------------  201 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCT------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCC------------------------
Confidence            36889999999999999999999999999999999876   699999999975421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|+|||++.    ..|+.++  ||||+              ||++|+|++|.+              
T Consensus       202 --~~~~~~~~gt~~y~aPE~~~----~~~~~~~--Diwsl--------------G~il~~ll~g~~--------------  245 (504)
T 3q5i_A          202 --DYKLRDRLGTAYYIAPEVLK----KKYNEKC--DVWSC--------------GVIMYILLCGYP--------------  245 (504)
T ss_dssp             --TSCBCCCCSCTTTCCHHHHT----TCBCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CCccccccCCcCCCCHHHhc----cCCCchH--HHHHH--------------HHHHHHHHhCCC--------------
Confidence              22344568999999999976    4588888  99999              999999766543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       |+.+.+....+..+..... .++..    .|.     ..++.+.+||     ++||+.||.+|||++|+|+||||....
T Consensus       246 -pf~~~~~~~~~~~i~~~~~-~~~~~----~~~-----~~s~~~~~li-----~~~L~~dp~~R~t~~e~l~h~~~~~~~  309 (504)
T 3q5i_A          246 -PFGGQNDQDIIKKVEKGKY-YFDFN----DWK-----NISDEAKELI-----KLMLTYDYNKRCTAEEALNSRWIKKYA  309 (504)
T ss_dssp             -SSCCSSHHHHHHHHHHCCC-CCCHH----HHT-----TSCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSHHHHHTC
T ss_pred             -CCCCCCHHHHHHHHHcCCC-CCCcc----ccC-----CCCHHHHHHH-----HHHcCCChhHCCCHHHHhcCHhhhhch
Confidence             4555554555555443322 22211    121     2336778888     999999999999999999999998654


Q ss_pred             C
Q psy7309         239 S  239 (454)
Q Consensus       239 ~  239 (454)
                      .
T Consensus       310 ~  310 (504)
T 3q5i_A          310 N  310 (504)
T ss_dssp             C
T ss_pred             h
Confidence            3

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.93  E-value=3.2e-27  Score=229.02  Aligned_cols=156  Identities=26%  Similarity=0.358  Sum_probs=114.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||.|||++|  |+||||||+|||++ .++.+||+|||++....                         
T Consensus       129 ~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~-------------------------  183 (290)
T 1t4h_A          129 KVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR-------------------------  183 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCccccc-------------------------
Confidence            467899999999999999999  99999999999998 78899999999996432                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        ........||+.|+|||++.    ..++.++  ||||+              |+++|+|++++.              
T Consensus       184 --~~~~~~~~~t~~y~aPE~~~----~~~~~~~--Di~sl--------------G~~l~~l~~g~~--------------  227 (290)
T 1t4h_A          184 --ASFAKAVIGTPEFMAPEMYE----EKYDESV--DVYAF--------------GMCMLEMATSEY--------------  227 (290)
T ss_dssp             --TTSBEESCSSCCCCCGGGGG----TCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --ccccccccCCcCcCCHHHHh----ccCCCcc--hHHHH--------------HHHHHHHHhCCC--------------
Confidence              12233457999999999876    4588888  99999              999999776543              


Q ss_pred             CCCCCc-hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGS-NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       |+... ........+.....   +...   .      ...++...++|     .+||+.||.+|||++|+++||||++
T Consensus       228 -pf~~~~~~~~~~~~~~~~~~---~~~~---~------~~~~~~l~~li-----~~~l~~dp~~Rps~~ell~h~~f~~  288 (290)
T 1t4h_A          228 -PYSECQNAAQIYRRVTSGVK---PASF---D------KVAIPEVKEII-----EGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             -TTTTCSSHHHHHHHHTTTCC---CGGG---G------GCCCHHHHHHH-----HHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             -CCCCcCcHHHHHHHHhccCC---cccc---C------CCCCHHHHHHH-----HHHccCChhhCCCHHHHhhCccccc
Confidence             22221 11122222221111   1110   0      11235677788     9999999999999999999999985

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.93  E-value=1.6e-27  Score=229.22  Aligned_cols=159  Identities=25%  Similarity=0.325  Sum_probs=111.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.....                          .
T Consensus       111 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~--------------------------~  164 (276)
T 2h6d_A          111 MEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSD--------------------------G  164 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCC--------------------------C
Confidence            36789999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..+ +.++  ||||+              |++++++++++.               |
T Consensus       165 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~~--Di~sl--------------G~~l~~l~~g~~---------------p  210 (276)
T 2h6d_A          165 EFLRTSCGSPNYAAPEVIS---GRLYAGPEV--DIWSC--------------GVILYALLCGTL---------------P  210 (276)
T ss_dssp             ------------CCTGGGT---TSCCCHHHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             cceecccCCccccCHHHHc---CCCCCCccc--hHHHH--------------HHHHHHHHhCCC---------------C
Confidence            1233457899999999987   3433 5677  99999              999999766543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +...........+... ...+|...             +....++|     .+||+.||.+|||++|+++||||.....
T Consensus       211 ~~~~~~~~~~~~~~~~-~~~~~~~~-------------~~~l~~li-----~~~l~~~p~~Rps~~~~l~h~~~~~~~~  270 (276)
T 2h6d_A          211 FDDEHVPTLFKKIRGG-VFYIPEYL-------------NRSVATLL-----MHMLQVDPLKRATIKDIREHEWFKQDLP  270 (276)
T ss_dssp             SCCSSHHHHHHHHHHC-CCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHSHHHHTTCC
T ss_pred             CCCCcHHHHHHHhhcC-cccCchhc-------------CHHHHHHH-----HHHccCChhhCCCHHHHHhChhhccCch
Confidence            3333333333333222 22233321             25667788     9999999999999999999999986543

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.93  E-value=2.5e-27  Score=230.86  Aligned_cols=165  Identities=27%  Similarity=0.384  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++......                         .
T Consensus       117 ~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------------------~  171 (302)
T 2j7t_A          117 PQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKT-------------------------L  171 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHH-------------------------H
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCcccccc-------------------------c
Confidence            467899999999999999999999999999999999999999999998754321                         0


Q ss_pred             CCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .......||+.|+|||++...  ....++.++  ||||+              |+++|+|+++..               
T Consensus       172 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------  220 (302)
T 2j7t_A          172 QKRDSFIGTPYWMAPEVVMCETMKDTPYDYKA--DIWSL--------------GITLIEMAQIEP---------------  220 (302)
T ss_dssp             HC-----CCGGGCCHHHHHHHHTTSTTTTTHH--HHHHH--------------HHHHHHHHHSSC---------------
T ss_pred             cccccccCChhhcCCeeeccccCCCCCCchhh--hHHHH--------------HHHHHHHhcCCC---------------
Confidence            112345799999999998411  145677777  99999              999999776543               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      |+...+.......+...........           ...+....++|     .+||+.||++|||++|+++||||....
T Consensus       221 p~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~dp~~Rps~~~ll~h~~~~~~~  283 (302)
T 2j7t_A          221 PHHELNPMRVLLKIAKSDPPTLLTP-----------SKWSVEFRDFL-----KIALDKNPETRPSAAQLLEHPFVSSIT  283 (302)
T ss_dssp             TTTTSCHHHHHHHHHHSCCCCCSSG-----------GGSCHHHHHHH-----HHHSCSCTTTSCCHHHHTTSTTTTTCC
T ss_pred             CCccCCHHHHHHHHhccCCcccCCc-----------cccCHHHHHHH-----HHHcccChhhCCCHHHHhcChHHhhhc
Confidence            2222222222222222222211111           11225667788     999999999999999999999998543

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.93  E-value=3.2e-27  Score=226.90  Aligned_cols=164  Identities=23%  Similarity=0.350  Sum_probs=117.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+||+++.++.+||+|||++......                       ...
T Consensus       105 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~-----------------------~~~  161 (276)
T 2yex_A          105 PDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN-----------------------NRE  161 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEET-----------------------TEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCC-----------------------cch
Confidence            368899999999999999999999999999999999999999999998754211                       011


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..+ +.++  ||||+              |+++|++++|..               |
T Consensus       162 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p  207 (276)
T 2yex_A          162 RLLNKMCGTLPYVAPELLK---RREFHAEPV--DVWSC--------------GIVLTAMLAGEL---------------P  207 (276)
T ss_dssp             CCBCCCCSCGGGCCGGGGT---CSSBCHHHH--HHHHH--------------HHHHHHHHHSSC---------------C
T ss_pred             hcccCCccccCccChHHHh---cCCCCCCcc--hHHHH--------------HHHHHHHHhCCC---------------C
Confidence            2234568999999999987   3343 6677  99999              999999766543               2


Q ss_pred             CCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +...... .....+... ....+.      |     ...++...++|     .+||+.||++|||++|+++||||.....
T Consensus       208 ~~~~~~~~~~~~~~~~~-~~~~~~------~-----~~~~~~~~~li-----~~~l~~~p~~Rps~~~il~~~~~~~~~~  270 (276)
T 2yex_A          208 WDQPSDSCQEYSDWKEK-KTYLNP------W-----KKIDSAPLALL-----HKILVENPSARITIPDIKKDRWYNKPLK  270 (276)
T ss_dssp             CSCSCTTSHHHHHHHTT-CTTSTT------G-----GGSCHHHHHHH-----HHHSCSSTTTSCCHHHHTTCTTTTCCCC
T ss_pred             CCCCchHHHHHHHhhhc-ccccCc------h-----hhcCHHHHHHH-----HHHCCCCchhCCCHHHHhcCccccChhh
Confidence            2221110 111111111 111111      1     11236667788     9999999999999999999999986544

>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C*

Probab=99.93  E-value=1e-26  Score=224.76  Aligned_cols=120  Identities=14%  Similarity=0.117  Sum_probs=108.8

Q ss_pred             HHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc--CCC-CceeeEeecCccccC
Q psy7309         322 LRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQN--GSI-VSMKRYCIDRVFRER  398 (454)
Q Consensus       322 l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~--~~~-~~~k~~y~g~vfR~~  398 (454)
                      ++++|++|||.+|.||+||+.+++..   +  +|.|++|+.++||||+|+|+|   +.+  ... .|+|+||+|+|||++
T Consensus        12 ~~~~~~~~Gy~eI~tP~le~~~l~~~---d--~f~d~~g~~l~LRpd~T~~~a---~~~~~~~~~~p~R~~y~g~vfR~e   83 (275)
T 1usy_A           12 FYSKATKKGFSPFFVPALEKAEEPAG---N--FFLDRKGNLFSIREDFTKTVL---NHRKRYSPDSQIKVWYADFVYRYS   83 (275)
T ss_dssp             HHHHHHHTTCEECCCCSEEECSSCCS---S--CEEETTSCEEEECCCHHHHHH---HHHTTCTTCCCEEEECCEEEEEEE
T ss_pred             HHHHHHHCCCEEecCccccchhhhcc---c--ccCCCCCCEEEeCCcChHHHH---HHHhhcCCCCceEEEEeceEEecC
Confidence            44999999999999999999999975   2  678999999999999999999   333  214 799999999999998


Q ss_pred             CCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         399 RVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       399 ~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                      +++.   |||+|+|+||+|.+ +..+|+|+|.++.++|+.+|+++++|+|||+++
T Consensus        84 ~~~~---Ref~Q~g~ei~g~~-~~~~DaEvi~l~~~~l~~lgl~~~~i~l~~~~~  134 (275)
T 1usy_A           84 GSDL---VAEYQLGLEKVPRN-SLDDSLEVLEIIVESASEFFEGPVIVEIGHTGV  134 (275)
T ss_dssp             TTEE---EEEEEEEEEEESCC-SHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTH
T ss_pred             CCCC---CeeeEeCEEEecCC-CchhHHHHHHHHHHHHHHcCCCCeEEEeCCHHH
Confidence            8765   99999999999998 899999999999999999999999999999974

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.93  E-value=9.2e-28  Score=245.67  Aligned_cols=152  Identities=18%  Similarity=0.173  Sum_probs=114.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                            
T Consensus       212 ~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~~~~~kL~DFG~a~~~~~----------------------------  263 (413)
T 3dzo_A          212 ARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA----------------------------  263 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCEETTE----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCcccceEEEecCCeEEEEeccceeecCC----------------------------
Confidence            5678889999999999999999999999999999999999999999875421                            


Q ss_pred             CCcCcccccceecccccccc-------ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhh
Q psy7309          83 SHTGQVGTALYAAPELDSHG-------VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIR  155 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~-------~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~  155 (454)
                      .....+| +.|+|||++...       ....|+.++  ||||+              ||++|||++|+.           
T Consensus       264 ~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~--DvwSl--------------Gvil~elltg~~-----------  315 (413)
T 3dzo_A          264 SAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAF--DTWTL--------------GLAIYWIWCADL-----------  315 (413)
T ss_dssp             EECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHH--HHHHH--------------HHHHHHHHHSSC-----------
T ss_pred             ccccCCC-CceeCchhhhccccccccccCcCCCchh--hHHHH--------------HHHHHHHHHCCC-----------
Confidence            1344577 999999998311       255688888  99999              999999876543           


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                          |+...........+.       +..           ...++...+||     .+||+.||++|||+.|+++||||.
T Consensus       316 ----Pf~~~~~~~~~~~~~-------~~~-----------~~~~~~~~~li-----~~~l~~dP~~Rpt~~~~l~~~~~~  368 (413)
T 3dzo_A          316 ----PNTDDAALGGSEWIF-------RSC-----------KNIPQPVRALL-----EGFLRYPKEDRLLPLQAMETPEYE  368 (413)
T ss_dssp             ----CCCTTGGGSCSGGGG-------SSC-----------CCCCHHHHHHH-----HHHTCSSGGGSCCHHHHTTSHHHH
T ss_pred             ----CCCCcchhhhHHHHH-------hhc-----------ccCCHHHHHHH-----HHHccCChhhCcCHHHHHhCHHHH
Confidence                333322211111111       100           11226677888     999999999999999999999998


Q ss_pred             cC
Q psy7309         236 EG  237 (454)
Q Consensus       236 ~~  237 (454)
                      ..
T Consensus       369 ~~  370 (413)
T 3dzo_A          369 QL  370 (413)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.93  E-value=3.1e-27  Score=243.21  Aligned_cols=165  Identities=28%  Similarity=0.338  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-----CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-----DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-----~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      +++.+++||+.||+|||++||+||||||+|||++.+     ..+||+|||+|+......                     
T Consensus       119 ~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~---------------------  177 (432)
T 3p23_A          119 EPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGR---------------------  177 (432)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC-------------------------
T ss_pred             hHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCC---------------------
Confidence            568899999999999999999999999999999532     258899999998553210                     


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhh
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRR  156 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~  156 (454)
                       .........+||+.|+|||++.......++.++  ||||+              ||++||+++ |..            
T Consensus       178 -~~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~--DiwSl--------------G~il~ellt~g~~------------  228 (432)
T 3p23_A          178 -HSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTV--DIFSA--------------GCVFYYVISEGSH------------  228 (432)
T ss_dssp             ---------CCSCTTSCCGGGTSCC---CCCTHH--HHHHH--------------HHHHHHHHTTSCB------------
T ss_pred             -cceeeccccCCCcCccChhhhhcccccCCCcHH--HHHHH--------------HHHHHHHHcCCCC------------
Confidence             111234456899999999999743345666777  99999              999999776 443            


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                         |+....... ................          ...+..+.+||     .+||+.||++|||++|+++||||..
T Consensus       229 ---pf~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~~~li-----~~~L~~dP~~Rps~~evl~hp~f~~  289 (432)
T 3p23_A          229 ---PFGKSLQRQ-ANILLGACSLDCLHPE----------KHEDVIARELI-----EKMIAMDPQKRPSAKHVLKHPFFWS  289 (432)
T ss_dssp             ---TTBSTTTHH-HHHHTTCCCCTTSCTT----------CHHHHHHHHHH-----HHHSCSSGGGSCCHHHHHTSTTTCC
T ss_pred             ---CcchhhHHH-HHHHhccCCccccCcc----------ccccHHHHHHH-----HHHHhCCHhhCCCHHHHHhCccccC
Confidence               221111111 1111111111110000          01124456677     9999999999999999999999974

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.93  E-value=2.9e-27  Score=231.12  Aligned_cols=160  Identities=24%  Similarity=0.378  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE---ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl---~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.|++.||+|||++||+||||||+||++   +.++.+||+|||++....                         
T Consensus       106 ~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~-------------------------  160 (304)
T 2jam_A          106 KDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQ-------------------------  160 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecC-------------------------
Confidence            4678999999999999999999999999999999   778899999999986321                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        ........||+.|+|||++.   +..|+.++  ||||+              |+++|+|++|..              
T Consensus       161 --~~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~--------------  205 (304)
T 2jam_A          161 --NGIMSTACGTPGYVAPEVLA---QKPYSKAV--DCWSI--------------GVITYILLCGYP--------------  205 (304)
T ss_dssp             --CBTTHHHHSCCCBCCTTTBS---SCSCCHHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CCccccccCCCCccChHHhc---cCCCCchh--hHHHH--------------HHHHHHHHHCCC--------------
Confidence              11233457999999999998   66788888  99999              999999776553              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+...........+.... ..++...    |     ...++...++|     .+||+.||++|||++|+++||||...
T Consensus       206 -pf~~~~~~~~~~~i~~~~-~~~~~~~----~-----~~~~~~~~~li-----~~~l~~dp~~Rps~~~~l~h~~~~~~  268 (304)
T 2jam_A          206 -PFYEETESKLFEKIKEGY-YEFESPF----W-----DDISESAKDFI-----CHLLEKDPNERYTCEKALSHPWIDGN  268 (304)
T ss_dssp             -TTTTSCHHHHHHHHHHCC-CCCCTTT----T-----TTSCHHHHHHH-----HHHHCSSTTTSCCHHHHHTSHHHHSS
T ss_pred             -CCCCCCHHHHHHHHHcCC-CCCCccc----c-----ccCCHHHHHHH-----HHHcCCChhHCcCHHHHhcCccccCC
Confidence             222222222222222221 1111110    0     11236677888     99999999999999999999999854

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.93  E-value=3.8e-27  Score=230.94  Aligned_cols=163  Identities=26%  Similarity=0.449  Sum_probs=120.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+|+||||+||+++.++.+||+|||++.....                         ..
T Consensus       125 ~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~-------------------------~~  179 (314)
T 3com_A          125 DEIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTD-------------------------TM  179 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBT-------------------------TB
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhh-------------------------hc
Confidence            46789999999999999999999999999999999999999999999975421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++|..               |+
T Consensus       180 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p~  225 (314)
T 3com_A          180 AKRNTVIGTPFWMAPEVIQ---EIGYNCVA--DIWSL--------------GITAIEMAEGKP---------------PY  225 (314)
T ss_dssp             SCBCCCCSCGGGCCHHHHS---SSCBCTTH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             cccCccCCCCCccChhhcC---CCCCCccc--cHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            2234467999999999987   56788888  99999              999999776553               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      ...........+.......+...           ...++...++|     .+||..||.+|||+.|+++||||.....
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~li-----~~~l~~dp~~Rpt~~~ll~~~~~~~~~~  287 (314)
T 3com_A          226 ADIHPMRAIFMIPTNPPPTFRKP-----------ELWSDNFTDFV-----KQCLVKSPEQRATATQLLQHPFVRSAKG  287 (314)
T ss_dssp             TTSCHHHHHHHHHHSCCCCCSSG-----------GGSCHHHHHHH-----HHHTCSCTTTSCCHHHHTTSHHHHTCCC
T ss_pred             CCCChHHHHHHHhcCCCcccCCc-----------ccCCHHHHHHH-----HHHccCChhhCcCHHHHHhCHHHhcCCc
Confidence            22222111222221222221111           11235667788     9999999999999999999999986543

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.93  E-value=3.8e-27  Score=236.35  Aligned_cols=186  Identities=18%  Similarity=0.163  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEcc------CCCeEEecccchhhhhhhcCCCccccccCccCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDY------EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDS   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~------~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~   74 (454)
                      ..++.++.||+.||+|||++ ||+||||||+|||++.      .+.+||+|||+|.....                    
T Consensus       131 ~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~--------------------  190 (373)
T 1q8y_A          131 IYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDE--------------------  190 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTB--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCC--------------------
Confidence            36889999999999999998 9999999999999954      33799999999975421                    


Q ss_pred             CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh--------
Q psy7309          75 TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT--------  146 (454)
Q Consensus        75 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~--------  146 (454)
                              .....+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.+.        
T Consensus       191 --------~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~g~~pf~~~~~~~~  243 (373)
T 1q8y_A          191 --------HYTNSIQTREYRSPEVLL---GAPWGCGA--DIWST--------------ACLIFELITGDFLFEPDEGHSY  243 (373)
T ss_dssp             --------CCCSCCSCGGGCCHHHHH---TCCCCTHH--HHHHH--------------HHHHHHHHHSSCCC--------
T ss_pred             --------CCCCCCCCccccCcHHHh---CCCCCchH--hHHHH--------------HHHHHHHHhCCCCCCCCccccc
Confidence                    233458899999999998   66788888  99999              88888877655421        


Q ss_pred             ---HHHHHHHhhhcCCCCCCchhhh--hhhhhc-cCCCCCCCccccccccccc------cccccccchhHHHHHHHHhhh
Q psy7309         147 ---LEELKHNIRRENGPSTGSNVQK--SLQKFQ-KSPPSVYREWRSSFEWSTV------RNNIKSNFQHFLILIHQQKWC  214 (454)
Q Consensus       147 ---~~~l~~~i~~~~~p~~~~~~~~--~~~~~~-~~~~~~~p~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~~~  214 (454)
                         ...+...+...+ +.+......  ....+. ...................      .+...++.+.+||     .+|
T Consensus       244 ~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li-----~~~  317 (373)
T 1q8y_A          244 TKDDDHIAQIIELLG-ELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFL-----SPM  317 (373)
T ss_dssp             -CHHHHHHHHHHHHC-SCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHH-----GGG
T ss_pred             CChHHHHHHHHHhcC-CCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHH-----HHH
Confidence               122222222222 211110000  000000 0000000000000000000      0011224556677     999


Q ss_pred             cCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         215 LNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       215 L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      |+.||++|||++|+|+||||......
T Consensus       318 L~~dP~~Rpt~~ell~hp~f~~~~~~  343 (373)
T 1q8y_A          318 LQLDPRKRADAGGLVNHPWLKDTLGM  343 (373)
T ss_dssp             GCSSTTTCBCHHHHHTCGGGTTCTTC
T ss_pred             hccCccccCCHHHHhhChhhhcccCc
Confidence            99999999999999999999976543

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.93  E-value=2.6e-27  Score=231.13  Aligned_cols=160  Identities=29%  Similarity=0.474  Sum_probs=121.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       119 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~-------------------------~~  173 (303)
T 3a7i_A          119 TQIATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTD-------------------------TQ  173 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBT-------------------------TB
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCc-------------------------cc
Confidence            46789999999999999999999999999999999999999999999975431                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++|.+               |+
T Consensus       174 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p~  219 (303)
T 3a7i_A          174 IKRNTFVGTPFWMAPEVIK---QSAYDSKA--DIWSL--------------GITAIELARGEP---------------PH  219 (303)
T ss_dssp             CCBCCCCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             cccCccCCCcCccCHHHHh---cCCCCchh--hhHHH--------------HHHHHHHccCCC---------------CC
Confidence            2234568999999999997   66788888  99999              999999776553               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ...........+.......++..             .+....++|     .+||+.||.+|||++|+++||||....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~~ll~~~~~~~~~  278 (303)
T 3a7i_A          220 SELHPMKVLFLIPKNNPPTLEGN-------------YSKPLKEFV-----EACLNKEPSFRPTAKELLKHKFILRNA  278 (303)
T ss_dssp             TTSCHHHHHHHHHHSCCCCCCSS-------------CCHHHHHHH-----HHHCCSSGGGSCCHHHHTTCHHHHHHC
T ss_pred             CCcCHHHHHHHhhcCCCCCCccc-------------cCHHHHHHH-----HHHcCCChhhCcCHHHHhhChhhhcCC
Confidence            22222222222222222222222             225667788     999999999999999999999998543

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.93  E-value=4.7e-27  Score=228.43  Aligned_cols=165  Identities=24%  Similarity=0.379  Sum_probs=119.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.....                          .
T Consensus       124 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~--------------------------~  177 (298)
T 1phk_A          124 KETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP--------------------------G  177 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT--------------------------T
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhhcCC--------------------------C
Confidence            46889999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceecccccccc---ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG---VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~---~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      .......||+.|+|||++...   ....++.++  ||||+              |+++|+|++++.              
T Consensus       178 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~--Di~sl--------------G~~l~~l~~g~~--------------  227 (298)
T 1phk_A          178 EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV--DMWST--------------GVIMYTLLAGSP--------------  227 (298)
T ss_dssp             CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             cccccccCCccccCHHHhccccccccccCCccc--ccHhH--------------HHHHHHHHHCCC--------------
Confidence            233456799999999997511   134577778  99999              999999776543              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       |+...........+.... ..++..    .|     ...++...++|     .+||+.||.+|||++|+++||||....
T Consensus       228 -p~~~~~~~~~~~~~~~~~-~~~~~~----~~-----~~~~~~l~~li-----~~~l~~dp~~Rps~~~ll~h~~~~~~~  291 (298)
T 1phk_A          228 -PFWHRKQMLMLRMIMSGN-YQFGSP----EW-----DDYSDTVKDLV-----SRFLVVQPQKRYTAEEALAHPFFQQYV  291 (298)
T ss_dssp             -SSCCSSHHHHHHHHHHTC-CCCCTT----TG-----GGSCHHHHHHH-----HHHCCSSGGGSCCHHHHTTSGGGCTTC
T ss_pred             -CCcCccHHHHHHHHhcCC-cccCcc----cc-----cccCHHHHHHH-----HHHccCCcccCCCHHHHHhChHhhhcc
Confidence             222222222222222111 111111    01     11236677888     999999999999999999999998644

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.93  E-value=2.1e-27  Score=234.53  Aligned_cols=192  Identities=25%  Similarity=0.344  Sum_probs=108.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||.|||++ ||+||||||+|||++.++.+||+|||++.....                          
T Consensus       125 ~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~--------------------------  178 (327)
T 3aln_A          125 EILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVD--------------------------  178 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceeccc--------------------------
Confidence            35789999999999999998 999999999999999999999999999975432                          


Q ss_pred             CCCCcCcccccceecccccccc-ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHG-VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~-~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ........||+.|+|||++... .+..++.++  ||||+              |+++|+|++|+.               
T Consensus       179 ~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------  227 (327)
T 3aln_A          179 SIAKTRDAGCRPYMAPERIDPSASRQGYDVRS--DVWSL--------------GITLYELATGRF---------------  227 (327)
T ss_dssp             ---------------------------CCSHH--HHHHH--------------HHHHHHHHHSCC---------------
T ss_pred             ccccccCCCCccccCceeeccccCcCCCCchh--hHHHH--------------HHHHHHHHHCCC---------------
Confidence            1122334799999999998421 145678888  99999              999999776543               


Q ss_pred             CCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      |+.... ....+..+.......++...    +     ...++...+++     .+||+.||++|||+.|+++||||....
T Consensus       228 pf~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~l~~li-----~~~l~~dp~~Rps~~ell~hp~~~~~~  293 (327)
T 3aln_A          228 PYPKWNSVFDQLTQVVKGDPPQLSNSE----E-----REFSPSFINFV-----NLCLTKDESKRPKYKELLKHPFILMYE  293 (327)
T ss_dssp             CSSCC-------CCCCCSCCCCCCCCS----S-----CCCCHHHHHHH-----HHHTCSSGGGSCCHHHHTTSHHHHHHH
T ss_pred             CCCCcchHHHHHHHHhcCCCCCCCCcc----c-----ccCCHHHHHHH-----HHHhhCChhhCcCHHHHHhChHHHHhH
Confidence            222211 11111111112222222110    0     12236677788     999999999999999999999998533


Q ss_pred             CCCCCccCccccccCCCCCCCCcchHHHHHHHHHHhcCCCChhH
Q psy7309         239 SSGLSVLGSEQLLTCDHIPPPLVGETVLQDMVRQTLSNPQSKGY  282 (454)
Q Consensus       239 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~  282 (454)
                      ...                  ........+.++.....|.++.|
T Consensus       294 ~~~------------------~~~~~~~~~~~~~~~~~~~~~~~  319 (327)
T 3aln_A          294 ERA------------------VEVACYVCKILDQMPATPSSPMY  319 (327)
T ss_dssp             HSC------------------CCHHHHHHHHHHHC---------
T ss_pred             hhH------------------HHHHHHHHHHHhcCCCCCCCCce
Confidence            211                  11334566666666666666655

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.93  E-value=3.8e-27  Score=232.11  Aligned_cols=165  Identities=21%  Similarity=0.220  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       137 ~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~-----------------------~~~  193 (323)
T 3qup_A          137 QTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSG-----------------------DYY  193 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEeecccccccccc-----------------------ccc
Confidence            368899999999999999999999999999999999999999999999865321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   +..|+.++  ||||+              ||++||+++ |.+               |
T Consensus       194 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ell~~g~~---------------p  239 (323)
T 3qup_A          194 RQGCASKLPVKWLALESLA---DNLYTVHS--DVWAF--------------GVTMWEIMTRGQT---------------P  239 (323)
T ss_dssp             -------CCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             cccccccCcccccCchhhc---CCCCCCcc--chhhH--------------HHHHHHHHhCCCC---------------C
Confidence            2233456788999999987   66788888  99999              999999766 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-------hhhhhcCcc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-------SEQNLCQPI  233 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-------a~e~l~hp~  233 (454)
                      +.+.........+........+...             ++...+++     .+||+.||++|||       .++++.|||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~~l~~~l~~~l~~~~  301 (323)
T 3qup_A          240 YAGIENAEIYNYLIGGNRLKQPPEC-------------MEEVYDLM-----YQCWSADPKQRPSFTCLRMELENILGHLS  301 (323)
T ss_dssp             TTTCCGGGHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHTTCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred             ccccChHHHHHHHhcCCCCCCCCcc-------------CHHHHHHH-----HHHccCChhhCcCHHHHHHHHHHHHHHhh
Confidence            4444444444444434333333332             25667788     9999999999999       677789999


Q ss_pred             cccCCCCC
Q psy7309         234 SLEGSSSG  241 (454)
Q Consensus       234 f~~~~~~~  241 (454)
                      +......+
T Consensus       302 ~~~~~~~p  309 (323)
T 3qup_A          302 VLSTSQDP  309 (323)
T ss_dssp             --------
T ss_pred             hcCCCCCC
Confidence            98765543

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.93  E-value=3.4e-27  Score=229.60  Aligned_cols=177  Identities=24%  Similarity=0.340  Sum_probs=113.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++........                    ....
T Consensus       121 ~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~--------------------~~~~  180 (303)
T 2vwi_A          121 STIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGD--------------------ITRN  180 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCC--------------------ccch
Confidence            36889999999999999999999999999999999999999999999986532100                    0111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++..  ...++.++  ||||+              |+++|+|++|+.               |+
T Consensus       181 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------pf  227 (303)
T 2vwi_A          181 KVRKTFVGTPCWMAPEVMEQ--VRGYDFKA--DIWSF--------------GITAIELATGAA---------------PY  227 (303)
T ss_dssp             -------CCCTTCCHHHHHH--HHCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             hhhcccCCCccccCHHHhcc--ccCCCchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            22345689999999999861  24578888  99999              999999776543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      ....................+....   .... ....++...++|     .+||+.||.+|||++|+++||||......
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~li-----~~~l~~dp~~Rps~~~ll~h~~~~~~~~~  297 (303)
T 2vwi_A          228 HKYPPMKVLMLTLQNDPPSLETGVQ---DKEM-LKKYGKSFRKMI-----SLCLQKDPEKRPTAAELLRHKFFQKAKNK  297 (303)
T ss_dssp             TTSCGGGHHHHHHTSSCCCTTC--------CC-CCCCCHHHHHHH-----HHHCCSSGGGSCCHHHHHTSTTC------
T ss_pred             ccCchhhHHHHHhccCCCccccccc---cchh-hhhhhHHHHHHH-----HHHccCChhhCcCHHHHhhChhhhcCCCC
Confidence            2222111111111111111111100   0000 012235667777     99999999999999999999999865443

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.93  E-value=2.5e-27  Score=238.66  Aligned_cols=162  Identities=20%  Similarity=0.227  Sum_probs=124.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++   .+||+|||+|+.....                       
T Consensus       181 ~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~-----------------------  237 (367)
T 3l9p_A          181 LDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA-----------------------  237 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccc-----------------------
Confidence            35789999999999999999999999999999999655   4999999999866432                       


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhc
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRE  157 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~  157 (454)
                      ..........||+.|+|||++.   +..|+.++  ||||+              ||++|||++ |.+             
T Consensus       238 ~~~~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~ellt~g~~-------------  285 (367)
T 3l9p_A          238 GYYRKGGCAMLPVKWMPPEAFM---EGIFTSKT--DTWSF--------------GVLLWEIFSLGYM-------------  285 (367)
T ss_dssp             SSCTTCCGGGSCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC-------------
T ss_pred             cccccCCCcCCcccEECHHHhc---CCCCCcHH--HHHHH--------------HHHHHHHHhCCCC-------------
Confidence            1122334567899999999997   67788888  99999              999999775 432             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                        |+...........+........+...             ++...+++     .+||+.||.+|||+.|+++|.++...
T Consensus       286 --pf~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dP~~Rps~~eil~~l~~~~~  345 (367)
T 3l9p_A          286 --PYPSKSNQEVLEFVTSGGRMDPPKNC-------------PGPVYRIM-----TQCWQHQPEDRPNFAIILERIEYCTQ  345 (367)
T ss_dssp             --SSTTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --CCCCCCHHHHHHHHHcCCCCCCCccC-------------CHHHHHHH-----HHHcCCCHhHCcCHHHHHHHHHHHhh
Confidence              44444444445555444444333332             25566777     99999999999999999999887654


Q ss_pred             C
Q psy7309         238 S  238 (454)
Q Consensus       238 ~  238 (454)
                      .
T Consensus       346 ~  346 (367)
T 3l9p_A          346 D  346 (367)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.93  E-value=2.1e-27  Score=229.16  Aligned_cols=162  Identities=25%  Similarity=0.347  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC----CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED----HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~----~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++    .+||+|||++.....                       
T Consensus       108 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~-----------------------  164 (283)
T 3bhy_A          108 DEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEA-----------------------  164 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccC-----------------------
Confidence            46889999999999999999999999999999998877    799999999875421                       


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                         ........||+.|+|||++.   +..++.++  ||||+              |+++|+++++..             
T Consensus       165 ---~~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~-------------  209 (283)
T 3bhy_A          165 ---GNEFKNIFGTPEFVAPEIVN---YEPLGLEA--DMWSI--------------GVITYILLSGAS-------------  209 (283)
T ss_dssp             ----------CCCGGGCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSC-------------
T ss_pred             ---CCcccccCCCcCccCcceec---CCCCCcch--hhhhH--------------HHHHHHHHHCCC-------------
Confidence               11233457999999999987   56788888  99999              999999766543             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                        |+...........+.... ..++...    +     ...++...+++     ++||+.||++|||+.|+++||||...
T Consensus       210 --p~~~~~~~~~~~~~~~~~-~~~~~~~----~-----~~~~~~~~~li-----~~~l~~dp~~Rps~~~~l~h~~~~~~  272 (283)
T 3bhy_A          210 --PFLGETKQETLTNISAVN-YDFDEEY----F-----SNTSELAKDFI-----RRLLVKDPKRRMTIAQSLEHSWIKAI  272 (283)
T ss_dssp             --TTCCSSHHHHHHHHHTTC-CCCCHHH----H-----TTCCHHHHHHH-----HTTSCSSGGGSCCHHHHHHCHHHHHH
T ss_pred             --CCCCcchHHHHHHhHhcc-cCCcchh----c-----ccCCHHHHHHH-----HHHccCCHhHCcCHHHHHhCHHHHHH
Confidence              333333333333333221 1111110    0     11235667788     99999999999999999999999864


Q ss_pred             C
Q psy7309         238 S  238 (454)
Q Consensus       238 ~  238 (454)
                      .
T Consensus       273 ~  273 (283)
T 3bhy_A          273 R  273 (283)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.93  E-value=5.2e-27  Score=231.26  Aligned_cols=162  Identities=27%  Similarity=0.425  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....                         ...
T Consensus       130 ~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~-------------------------~~~  184 (326)
T 2x7f_A          130 WIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDR-------------------------TVG  184 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCceecCc-------------------------Ccc
Confidence            5789999999999999999999999999999999999999999999875431                         111


Q ss_pred             CCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ......||+.|+|||++...  ....++.++  ||||+              ||++|+|++|..               |
T Consensus       185 ~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p  233 (326)
T 2x7f_A          185 RRNTFIGTPYWMAPEVIACDENPDATYDFKS--DLWSL--------------GITAIEMAEGAP---------------P  233 (326)
T ss_dssp             ------CCGGGCCHHHHC--------CCTTH--HHHHH--------------HHHHHHHHHSSC---------------T
T ss_pred             ccccccCCccccChhhhccccccCcCCCccc--hHHHH--------------HHHHHHHHhCCC---------------C
Confidence            23445799999999998621  135677778  99999              999999776554               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      +...........+..........            ...++...++|     .+||..||.+|||++|+++||||...
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~li-----~~~l~~dp~~Rps~~~ll~hp~~~~~  293 (326)
T 2x7f_A          234 LCDMHPMRALFLIPRNPAPRLKS------------KKWSKKFQSFI-----ESCLVKNHSQRPATEQLMKHPFIRDQ  293 (326)
T ss_dssp             TTTSCHHHHHHHHHHSCCCCCSC------------SCSCHHHHHHH-----HHHCCSSGGGSCCHHHHHTSHHHHCC
T ss_pred             CCCCcHHHHHHHhhcCccccCCc------------cccCHHHHHHH-----HHHhccChhhCCCHHHHhhChHHhhC
Confidence            22222222222222122211111            11236677888     99999999999999999999999853

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.93  E-value=5e-27  Score=228.97  Aligned_cols=164  Identities=23%  Similarity=0.286  Sum_probs=121.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       109 ~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~-----------------------~~~  165 (305)
T 2wtk_C          109 CQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPF-----------------------AAD  165 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTT-----------------------CSS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCcc-----------------------ccc
Confidence            367899999999999999999999999999999999999999999998754210                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++... ...++.++  ||||+              |+++|++++|+.               |+
T Consensus       166 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------p~  213 (305)
T 2wtk_C          166 DTCRTSQGSPAFQPPEIANGL-DTFSGFKV--DIWSA--------------GVTLYNITTGLY---------------PF  213 (305)
T ss_dssp             CEECCCCSCGGGCCHHHHTCC-SCEESHHH--HHHHH--------------HHHHHHHHHSSC---------------SC
T ss_pred             cccccCCCCCCCcChhhccCc-ccCCcchh--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            223345799999999998621 22345677  99999              999999766543               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      .+.........+... ...++...             ++...++|     ++||+.||++|||++|+++||||.....
T Consensus       214 ~~~~~~~~~~~i~~~-~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~~ll~~~~~~~~~~  272 (305)
T 2wtk_C          214 EGDNIYKLFENIGKG-SYAIPGDC-------------GPPLSDLL-----KGMLEYEPAKRFSIRQIRQHSWFRKKHP  272 (305)
T ss_dssp             CCSSHHHHHHHHHHC-CCCCCSSS-------------CHHHHHHH-----HHHTCSSTTTSCCHHHHHHSHHHHSCCC
T ss_pred             CCchHHHHHHHHhcC-CCCCCCcc-------------CHHHHHHH-----HHHccCChhhCCCHHHHhcCcccccCCC
Confidence            333333333333322 22233221             25667788     9999999999999999999999987654

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.93  E-value=7.8e-27  Score=226.59  Aligned_cols=172  Identities=35%  Similarity=0.507  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++...........           ..........
T Consensus       116 ~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~-----------~~~~~~~~~~  184 (303)
T 1zy4_A          116 DEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILK-----------LDSQNLPGSS  184 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhc-----------cccccccccc
Confidence            46789999999999999999999999999999999999999999999985432110000           0000000112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh--hHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK--TLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~--~~~~l~~~i~~~~~  159 (454)
                      .......||+.|+|||++..  ...++.++  ||||+              ||++|+|++....  ........+.    
T Consensus       185 ~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~~l~~p~~~~~~~~~~~~~~~----  242 (303)
T 1zy4_A          185 DNLTSAIGTAMYVATEVLDG--TGHYNEKI--DMYSL--------------GIIFFEMIYPFSTGMERVNILKKLR----  242 (303)
T ss_dssp             ---------CTTSCHHHHTS--CSCCCTHH--HHHHH--------------HHHHHHHHSCCSSHHHHHHHHHHHH----
T ss_pred             cccccCCCcccccCcccccC--CCCCcchh--hHHHH--------------HHHHHHHHhccCCchhHHHHHHhcc----
Confidence            23456789999999999871  23678888  99999              9999996652211  1111111111    


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                                      .....+|...+         ....+...++|     ++||+.||.+|||++|+++||||..
T Consensus       243 ----------------~~~~~~~~~~~---------~~~~~~~~~li-----~~~l~~dp~~Rps~~~ll~h~~~~~  289 (303)
T 1zy4_A          243 ----------------SVSIEFPPDFD---------DNKMKVEKKII-----RLLIDHDPNKRPGARTLLNSGWLPV  289 (303)
T ss_dssp             ----------------STTCCCCTTCC---------TTTSHHHHHHH-----HHHTCSSGGGSCCHHHHHHSSCSCC
T ss_pred             ----------------ccccccCcccc---------ccchHHHHHHH-----HHHHhcCcccCcCHHHHhCCCCcCC
Confidence                            12222332211         11225567788     9999999999999999999999974

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.93  E-value=8e-27  Score=230.53  Aligned_cols=155  Identities=16%  Similarity=0.205  Sum_probs=116.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       115 ~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~-----------------------~~~  171 (325)
T 3kex_A          115 QLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPD-----------------------DKQ  171 (325)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCC-----------------------TTC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCcc-----------------------ccc
Confidence            468899999999999999999999999999999999999999999999865321                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||..|+|||++.   +..|+.++  ||||+              |+++|++++ |+.               |
T Consensus       172 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~~g~~---------------p  217 (325)
T 3kex_A          172 LLYSEAKTPIKWMALESIH---FGKYTHQS--DVWSY--------------GVTVWELMTFGAE---------------P  217 (325)
T ss_dssp             CC-----CCTTTSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             ccccCCCCcccccChHHhc---cCCCChhh--HhHHh--------------HHHHHHHHhCCCC---------------C
Confidence            2334567888999999997   67788888  99999              999999766 543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.........+........+...             +....+++     .+||+.||.+|||+.|+++|
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~li-----~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          218 YAGLRLAEVPDLLEKGERLAQPQIC-------------TIDVYMVM-----VKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             TTTSCTTHHHHHHHTTCBCCCCTTB-------------CTTTTHHH-----HHHTCSCTTTSCCHHHHHHH
T ss_pred             ccccCHHHHHHHHHcCCCCCCCCcC-------------cHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            3333333333444433333333332             25667888     99999999999999999876

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.93  E-value=2.2e-27  Score=232.97  Aligned_cols=166  Identities=25%  Similarity=0.351  Sum_probs=114.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       116 ~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~----------------------~~~  173 (311)
T 3ork_A          116 KRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG----------------------NSV  173 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccc----------------------ccc
Confidence            4688999999999999999999999999999999999999999999998653210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              |+++|||++|+.               |+
T Consensus       174 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~ll~g~~---------------pf  219 (311)
T 3ork_A          174 TQTAAVIGTAQYLSPEQAR---GDSVDARS--DVYSL--------------GCVLYEVLTGEP---------------PF  219 (311)
T ss_dssp             --------CCTTCCHHHHH---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC---------------SC
T ss_pred             ccccccCcCcccCCHHHhc---CCCCCchH--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            2334468999999999997   66788888  99999              999999776543               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      .+......................          ...++...++|     .+||+.||.+||++.+++.|+|+....
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~li-----~~~l~~dP~~R~~~~~~l~~~l~~~~~  281 (311)
T 3ork_A          220 TGDSPVSVAYQHVREDPIPPSARH----------EGLSADLDAVV-----LKALAKNPENRYQTAAEMRADLVRVHN  281 (311)
T ss_dssp             CCSSHHHHHHHHHHCCCCCHHHHS----------TTCCHHHHHHH-----HHHTCSSGGGSCSSHHHHHHHHHHHHT
T ss_pred             CCCChHHHHHHHhcCCCCCccccc----------CCCCHHHHHHH-----HHHHhcCHhhChhhHHHHHHHHHHHhc
Confidence            333222222222212111111100          11236677888     999999999999999999999998543

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.93  E-value=2.6e-27  Score=228.03  Aligned_cols=161  Identities=30%  Similarity=0.412  Sum_probs=120.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC-----CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG-----IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g-----iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      ..++.++.|++.||+|||++|     |+||||||+|||++.++.+||+|||++......                     
T Consensus       111 ~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~---------------------  169 (279)
T 2w5a_A          111 EFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHD---------------------  169 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccc---------------------
Confidence            368899999999999999999     999999999999999999999999999864310                     


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                          ........||+.|+|||++.   +..++.++  ||||+              |+++|+++++..            
T Consensus       170 ----~~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~------------  214 (279)
T 2w5a_A          170 ----TSFAKTFVGTPYYMSPEQMN---RMSYNEKS--DIWSL--------------GCLLYELCALMP------------  214 (279)
T ss_dssp             ----CHHHHHHHSCCTTCCHHHHH---CC-CCHHH--HHHHH--------------HHHHHHHHHSSC------------
T ss_pred             ----cccccccCCCccccChHHhc---cCCCCchh--hHHHH--------------HHHHHHHHHCCC------------
Confidence                11122357899999999987   56788888  99999              999999766543            


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                         |+...........+.......++..             .++...++|     .+||+.||.+|||++|+++|+|+.+
T Consensus       215 ---p~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~ll~~~~~~~  273 (279)
T 2w5a_A          215 ---PFTAFSQKELAGKIREGKFRRIPYR-------------YSDELNEII-----TRMLNLKDYHRPSVEEILENPLILE  273 (279)
T ss_dssp             ---SSCCSSHHHHHHHHHHTCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSCCHHHHHTSTTCCG
T ss_pred             ---CCcccCHHHHHHHHhhcccccCCcc-------------cCHHHHHHH-----HHHcCCCcccCCCHHHHHhChhhhh
Confidence               3333333333333333333233332             226677888     9999999999999999999999987


Q ss_pred             CCC
Q psy7309         237 GSS  239 (454)
Q Consensus       237 ~~~  239 (454)
                      ...
T Consensus       274 ~~~  276 (279)
T 2w5a_A          274 HHH  276 (279)
T ss_dssp             GGS
T ss_pred             hcc
Confidence            654

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.93  E-value=1.3e-27  Score=235.65  Aligned_cols=163  Identities=26%  Similarity=0.347  Sum_probs=115.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC---eEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~---vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.   +||+|||++.....                        
T Consensus       114 ~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~------------------------  169 (322)
T 2ycf_A          114 ATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGE------------------------  169 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceeccc------------------------
Confidence            367899999999999999999999999999999987665   99999999875421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        ........||+.|+|||++.......|+.++  ||||+              ||++|+|++|..              
T Consensus       170 --~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~--Di~sl--------------G~il~~l~~g~~--------------  217 (322)
T 2ycf_A          170 --TSLMRTLCGTPTYLAPEVLVSVGTAGYNRAV--DCWSL--------------GVILFICLSGYP--------------  217 (322)
T ss_dssp             --CHHHHHHHSCCTTCCHHHHHHTTTTTCTTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --ccccccccCCcCccCchhhccCCCCCCCchh--hHHHH--------------HHHHHHHHhCCC--------------
Confidence              1112345789999999997522245678888  99999              999999776543              


Q ss_pred             CCCCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       |+...... .....+........+..     |     ...++...++|     .+||+.||++|||++|+++||||..
T Consensus       218 -pf~~~~~~~~~~~~~~~~~~~~~~~~-----~-----~~~~~~~~~li-----~~~l~~dP~~Rps~~~~l~h~~~~~  280 (322)
T 2ycf_A          218 -PFSEHRTQVSLKDQITSGKYNFIPEV-----W-----AEVSEKALDLV-----KKLLVVDPKARFTTEEALRHPWLQD  280 (322)
T ss_dssp             -SSCSTTCSSCHHHHHHHTCCCCCHHH-----H-----TTSCHHHHHHH-----HHHSCSSTTTSCCHHHHHTSGGGCC
T ss_pred             -CCcccchHHHHHHHHHhCccccCchh-----h-----hhcCHHHHHHH-----HHHcccCHhhCCCHHHHhhCcCcCC
Confidence             22211111 11111111111111111     1     11236667888     9999999999999999999999974

>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1

Probab=99.93  E-value=6e-26  Score=232.78  Aligned_cols=152  Identities=11%  Similarity=0.146  Sum_probs=129.8

Q ss_pred             CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCCCCeEe
Q psy7309         293 KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRGGSIVT  364 (454)
Q Consensus       293 ~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~G~~~~  364 (454)
                      ..+++.|++       |..+.++++|++.++++|++|||.+|.||+|++.+++..+        .+++|+|.|++|+.++
T Consensus         4 ~~~G~~~~~-------p~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~   76 (420)
T 1qe0_A            4 IPRGTQDIL-------PEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSIT   76 (420)
T ss_dssp             CCTTCCCBC-------HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEE
T ss_pred             CCCcccccC-------HHHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEE
Confidence            445566666       8888899999999999999999999999999999987654        2589999999999999


Q ss_pred             eCCCCCHHHHHHHHHcC----CCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Q psy7309         365 LPHDLRIPFARYLAQNG----SIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFN  440 (454)
Q Consensus       365 Lr~d~T~p~aR~~a~~~----~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~  440 (454)
                      ||||.|+|+||+++.+.    ...|+|+||+|+|||+++++.||.|||+|+|+|++|.+ +..+|+|++.++.++|+.+|
T Consensus        77 Lrp~~t~~~~r~~~~~~~~~~~~lP~r~~~~g~vfR~E~~~~gR~reF~q~~~e~~~~~-~~~~d~e~i~~~~~~l~~lg  155 (420)
T 1qe0_A           77 LRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAE-NPSVDAEVLAMVMHIYQSFG  155 (420)
T ss_dssp             ECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCC-CHHHHHHHHHHHHHHHHHTT
T ss_pred             eCCCChHHHHHHHHhccccccCCCCeEEEEecCEeecCCCcCCCcccEEEeeEEEECCC-CchhHHHHHHHHHHHHHHcC
Confidence            99999999999998643    24699999999999999999999999999999999998 88999999999999999999


Q ss_pred             CCCcEEEcCccc
Q psy7309         441 YGNISFAPHPRV  452 (454)
Q Consensus       441 ~~~~~i~i~~~~  452 (454)
                      ++++.|.+||++
T Consensus       156 l~~~~i~l~~~g  167 (420)
T 1qe0_A          156 LKHLKLVINSVG  167 (420)
T ss_dssp             CCCEEEEEEECC
T ss_pred             CCceEEEEcccC
Confidence            988999999865

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.93  E-value=2.9e-27  Score=235.10  Aligned_cols=165  Identities=24%  Similarity=0.332  Sum_probs=99.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC---CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE---DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~---~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+++.++.||+.||.|||++||+||||||+|||++.+   +.+||+|||++.....                        
T Consensus       128 ~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~------------------------  183 (336)
T 3fhr_A          128 REAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQ------------------------  183 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceeccc------------------------
Confidence            4689999999999999999999999999999999864   4599999999874321                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                         ......+||+.|+|||++.   +..|+.++  ||||+              |+++|+|++|..+....-...+    
T Consensus       184 ---~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~pf~~~~~~~~----  237 (336)
T 3fhr_A          184 ---NALQTPCYTPYYVAPEVLG---PEKYDKSC--DMWSL--------------GVIMYILLCGFPPFYSNTGQAI----  237 (336)
T ss_dssp             --------------------------CHHHHHH--HHHHH--------------HHHHHHHHHSSCCC------------
T ss_pred             ---cccccCCCCcCccChhhhC---CCCCCchh--hHHHH--------------HHHHHHHHHCCCCCCCccchhh----
Confidence               1233467899999999987   67788888  99999              9999997766543211110000    


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                             .......+. .....++..    .|     ...++.+.+||     ++||+.||++|||++|+|+||||....
T Consensus       238 -------~~~~~~~~~-~~~~~~~~~----~~-----~~~~~~~~~li-----~~~L~~dP~~Rpt~~ell~hp~~~~~~  295 (336)
T 3fhr_A          238 -------SPGMKRRIR-LGQYGFPNP----EW-----SEVSEDAKQLI-----RLLLKTDPTERLTITQFMNHPWINQSM  295 (336)
T ss_dssp             ---------------------CCCTT----TS-----TTCCHHHHHHH-----HHHSCSSGGGSCCHHHHHHSHHHHTGG
T ss_pred             -------hhhHHHhhh-ccccccCch----hh-----ccCCHHHHHHH-----HHHCCCChhHCcCHHHHhcCccccccc
Confidence                   000000010 111111111    11     12236677888     999999999999999999999998643

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.93  E-value=6.2e-27  Score=236.03  Aligned_cols=154  Identities=23%  Similarity=0.301  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       203 ~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~-----------------------~~~  259 (370)
T 2psq_A          203 KDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI-----------------------DYY  259 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCSSCEETTCC-----------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCCCCEEEccccCCcccCcc-----------------------cce
Confidence            357889999999999999999999999999999999999999999999854321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++|||++ |+.               |
T Consensus       260 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~ellt~g~~---------------p  305 (370)
T 2psq_A          260 KKTTNGRLPVKWMAPEALF---DRVYTHQS--DVWSF--------------GVLMWEIFTLGGS---------------P  305 (370)
T ss_dssp             CTTTTTTSCGGGCCHHHHH---TCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             ecccCCCcccceECHhHhc---CCCCCcHH--HHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            2234457789999999997   67788888  99999              999999776 432               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........|...             ++...++|     .+||+.||.+|||+.|+++
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dP~~Rpt~~ell~  357 (370)
T 2psq_A          306 YPGIPVEELFKLLKEGHRMDKPANC-------------TNELYMMM-----RDCWHAVPSQRPTFKQLVE  357 (370)
T ss_dssp             STTCCGGGHHHHHHTTCCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHhcCCCCCCCCCC-------------CHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            4444444444444444333333332             25667788     9999999999999998876

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.93  E-value=8.5e-27  Score=228.53  Aligned_cols=163  Identities=25%  Similarity=0.349  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||.|||++ ||+||||||+|||++.++.+||+|||++.....                          
T Consensus       124 ~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~--------------------------  177 (318)
T 2dyl_A          124 RILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVD--------------------------  177 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccC--------------------------
Confidence            35789999999999999995 999999999999999999999999999975432                          


Q ss_pred             CCCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      ........||+.|+|||++...  ....++.++  ||||+              |+++|+|++++.              
T Consensus       178 ~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~--Di~sl--------------G~il~~l~~g~~--------------  227 (318)
T 2dyl_A          178 DKAKDRSAGCAAYMAPERIDPPDPTKPDYDIRA--DVWSL--------------GISLVELATGQF--------------  227 (318)
T ss_dssp             ---------CCTTCCHHHHC--------CCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             CccccccCCCccccChhhcccccccccCCcccc--chhhH--------------HHHHHHHHhCCC--------------
Confidence            1123345799999999998521  145677788  99999              999999776543              


Q ss_pred             CCCCC-chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTG-SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+.. ......+..+.......++...           ..++...++|     .+||+.||.+|||++|+++||||...
T Consensus       228 -pf~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~li-----~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (318)
T 2dyl_A          228 -PYKNCKTDFEVLTKVLQEEPPLLPGHM-----------GFSGDFQSFV-----KDCLTKDHRKRPKYNKLLEHSFIKRY  290 (318)
T ss_dssp             -TTTTCCSHHHHHHHHHHSCCCCCCSSS-----------CCCHHHHHHH-----HHHTCSCTTTSCCHHHHTTSHHHHHH
T ss_pred             -CCCCCCccHHHHHHHhccCCCCCCccC-----------CCCHHHHHHH-----HHHccCChhHCcCHHHHhhCHHHHhc
Confidence             2221 1112222222223333333221           1236677888     99999999999999999999999853

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.93  E-value=8.5e-27  Score=230.69  Aligned_cols=155  Identities=19%  Similarity=0.246  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       117 ~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~-----------------------~~~  173 (327)
T 3poz_A          117 QYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE-----------------------EKE  173 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTT-----------------------CC-
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCC-----------------------ccc
Confidence            357899999999999999999999999999999999999999999999876421                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++||+++ |+.               |
T Consensus       174 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~---------------p  219 (327)
T 3poz_A          174 YHAEGGKVPIKWMALESIL---HRIYTHQS--DVWSY--------------GVTVWELMTFGSK---------------P  219 (327)
T ss_dssp             ------CCCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             ccccCCCccccccChHHhc---cCCCCchh--hhhhh--------------HHHHHHHHhcCCC---------------C
Confidence            2233456788999999998   67788888  99999              999999766 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.........+........+...             .....+++     .+||+.||.+|||+.|++++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~li-----~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          220 YDGIPASEISSILEKGERLPQPPIC-------------TIDVYMIM-----VKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             TTTCCGGGHHHHHHTTCCCCCCTTB-------------CHHHHHHH-----HHHTCSCGGGSCCHHHHHHH
T ss_pred             ccCCCHHHHHHHHHcCCCCCCCccC-------------CHHHHHHH-----HHHcCCChhhCCCHHHHHHH
Confidence            3333333333344333333333321             25566777     99999999999999999875

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.93  E-value=3.2e-27  Score=231.32  Aligned_cols=186  Identities=25%  Similarity=0.312  Sum_probs=117.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||++.......                      ..
T Consensus       120 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~----------------------~~  177 (320)
T 2i6l_A          120 EHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHY----------------------SH  177 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCc----------------------cc
Confidence            36789999999999999999999999999999997 45689999999998543210                      11


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIR  155 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~  155 (454)
                      ........||+.|+|||++..  ...++.++  ||||+              |+++||+++|+..     ....+.. +.
T Consensus       178 ~~~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Di~sl--------------G~il~el~~g~~pf~~~~~~~~~~~-~~  238 (320)
T 2i6l_A          178 KGHLSEGLVTKWYRSPRLLLS--PNNYTKAI--DMWAA--------------GCIFAEMLTGKTLFAGAHELEQMQL-IL  238 (320)
T ss_dssp             --CCCGGGSCCTTCCHHHHHC--TTCCCHHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHH-HH
T ss_pred             ccccccccccccccCcHHhcC--cccCCchh--hhHhH--------------HHHHHHHHhCCCCCCCCCHHHHHHH-HH
Confidence            123344678999999999862  35678888  99999              9999997765531     1111211 11


Q ss_pred             hcCCCCCCchhhhhhhhhc---cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         156 RENGPSTGSNVQKSLQKFQ---KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      ...+........+....+.   ... ...+.    ..+.... ...++...++|     ++||+.||++|||++|+++||
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~-~~~~~~~~~li-----~~~L~~dP~~Rpt~~ell~hp  307 (320)
T 2i6l_A          239 ESIPVVHEEDRQELLSVIPVYIRND-MTEPH----KPLTQLL-PGISREAVDFL-----EQILTFSPMDRLTAEEALSHP  307 (320)
T ss_dssp             HHSCCCCHHHHHHHHTTSCHHHHHH-TTSCC----CCHHHHS-TTCCHHHHHHH-----HTTSCSSGGGSCCHHHHHTSH
T ss_pred             HhcCCCchhhhhhhhhcCccccccc-ccCCC----CChhHhc-chhhHHHHHHH-----HHHcCCCccccCCHHHHhCCc
Confidence            1111111111111110000   000 00000    0011111 12346677888     999999999999999999999


Q ss_pred             ccccCCC
Q psy7309         233 ISLEGSS  239 (454)
Q Consensus       233 ~f~~~~~  239 (454)
                      ||.....
T Consensus       308 ~~~~~~~  314 (320)
T 2i6l_A          308 YMSIYSF  314 (320)
T ss_dssp             HHHTTCC
T ss_pred             ccccccC
Confidence            9986443

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.93  E-value=1e-26  Score=228.14  Aligned_cols=165  Identities=23%  Similarity=0.334  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++ ++.+||+|||++......                       ...
T Consensus       127 ~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~-----------------------~~~  182 (313)
T 3cek_A          127 WERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPD-----------------------TTS  182 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeeccccccccCc-----------------------ccc
Confidence            36789999999999999999999999999999996 589999999999854321                       111


Q ss_pred             CCCcCcccccceecccccccc--------ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHH
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--------VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHN  153 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--------~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~  153 (454)
                      .......||+.|+|||++...        ....++.++  ||||+              |+++|+|++|+.+        
T Consensus       183 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~--Di~sl--------------G~il~el~~g~~p--------  238 (313)
T 3cek_A          183 VVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKS--DVWSL--------------GCILYYMTYGKTP--------  238 (313)
T ss_dssp             -------CCGGGCCHHHHTTCC----------CCCHHH--HHHHH--------------HHHHHHHHHSSCT--------
T ss_pred             ccccCCCCCCCcCCHHHHhhcccccccccccccCCchH--HHHHH--------------HHHHHHHHhCCCc--------
Confidence            123346799999999998621        114677788  99999              9999997765532        


Q ss_pred             hhhcCCCCCCc-hhhhhhhh-hccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         154 IRRENGPSTGS-NVQKSLQK-FQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       154 i~~~~~p~~~~-~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                             +... ........ ........++..             .+..+.++|     .+||+.||++|||++|+++|
T Consensus       239 -------f~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~ell~h  293 (313)
T 3cek_A          239 -------FQQIINQISKLHAIIDPNHEIEFPDI-------------PEKDLQDVL-----KCCLKRDPKQRISIPELLAH  293 (313)
T ss_dssp             -------TTTCCSHHHHHHHHHCTTSCCCCCCC-------------SCHHHHHHH-----HHHTCSSTTTSCCHHHHHTS
T ss_pred             -------hhhHHHHHHHHHHHHhcccccCCccc-------------chHHHHHHH-----HHHccCCcccCcCHHHHhcC
Confidence                   1111 00111111 111222222222             125667788     99999999999999999999


Q ss_pred             cccccCCC
Q psy7309         232 PISLEGSS  239 (454)
Q Consensus       232 p~f~~~~~  239 (454)
                      |||.....
T Consensus       294 ~~~~~~~~  301 (313)
T 3cek_A          294 PYVQIQTH  301 (313)
T ss_dssp             HHHHCC--
T ss_pred             ccccCCCC
Confidence            99986543

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.93  E-value=5.2e-27  Score=241.60  Aligned_cols=168  Identities=28%  Similarity=0.379  Sum_probs=109.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-------------CCeEEecccchhhhhhhcCCCccccccCccC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-------------DHVKIGDFGLATNILQKHAGPLARELTGYIL   69 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-------------~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~   69 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.+             +.+||+|||+|+.......            
T Consensus       116 ~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~------------  183 (434)
T 2rio_A          116 NPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQS------------  183 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC---------------
T ss_pred             hHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCc------------
Confidence            357899999999999999999999999999999754             3799999999986432100            


Q ss_pred             CCCCCCCcccCCCCCcCcccccceecccccccc----ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-Cch
Q psy7309          70 PPIDSTAFYSHDTSHTGQVGTALYAAPELDSHG----VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRP  144 (454)
Q Consensus        70 ~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~----~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~  144 (454)
                               .........+||+.|+|||++...    ....++.++  ||||+              ||++|||++ |..
T Consensus       184 ---------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~--DiwSl--------------G~il~ellt~g~~  238 (434)
T 2rio_A          184 ---------SFRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSI--DIFSM--------------GCVFYYILSKGKH  238 (434)
T ss_dssp             --------------------CCTTSCHHHHSCCCTTSCCCCCCTHH--HHHHH--------------HHHHHHHHTTSCC
T ss_pred             ---------cceeeecCCCCCCCccCHHHhccccccccccCcchhh--hhHhH--------------HHHHHHHHhCCCC
Confidence                     011123456899999999998621    125678888  99999              999999776 443


Q ss_pred             hhHHHHHHHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC
Q psy7309         145 KTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS  224 (454)
Q Consensus       145 ~~~~~l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt  224 (454)
                                     |+....... ..... . ...++... ...+     ...++.+.++|     .+||+.||++|||
T Consensus       239 ---------------Pf~~~~~~~-~~i~~-~-~~~~~~~~-~~~~-----~~~~~~~~~li-----~~~L~~dP~~Rps  289 (434)
T 2rio_A          239 ---------------PFGDKYSRE-SNIIR-G-IFSLDEMK-CLHD-----RSLIAEATDLI-----SQMIDHDPLKRPT  289 (434)
T ss_dssp             ---------------TTCSTTTHH-HHHHH-T-CCCCCCCT-TCCC-----HHHHHHHHHHH-----HHHTCSSGGGSCC
T ss_pred             ---------------CCCCchhhH-HHHhc-C-CCCccccc-cccc-----ccchHHHHHHH-----HHHhhCChhhCCC
Confidence                           221111110 00000 0 01111110 0000     11225667777     9999999999999


Q ss_pred             hhhhhcCccccc
Q psy7309         225 SEQNLCQPISLE  236 (454)
Q Consensus       225 a~e~l~hp~f~~  236 (454)
                      +.|+++||||..
T Consensus       290 ~~eil~hp~f~~  301 (434)
T 2rio_A          290 AMKVLRHPLFWP  301 (434)
T ss_dssp             HHHHHTSGGGSC
T ss_pred             HHHHHhCCccCC
Confidence            999999999963

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.92  E-value=9.7e-27  Score=232.95  Aligned_cols=174  Identities=22%  Similarity=0.339  Sum_probs=117.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHc-CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~-giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.|++.||.|||++ ||+||||||+|||++.++.+||+|||++......                         
T Consensus       131 ~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-------------------------  185 (360)
T 3eqc_A          131 QILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-------------------------  185 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccc-------------------------
Confidence            35789999999999999996 9999999999999999999999999999865421                         


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh----hHHHHHHHhhh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK----TLEELKHNIRR  156 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~----~~~~l~~~i~~  156 (454)
                        ......||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|+.+    ...++...+..
T Consensus       186 --~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~pf~~~~~~~~~~~~~~  244 (360)
T 3eqc_A          186 --MANSFVGTRSYMSPERLQ---GTHYSVQS--DIWSM--------------GLSLVEMAVGRYPIPPPDAKELELMFGC  244 (360)
T ss_dssp             --C----CCCCTTCCHHHHT---TCCCSHHH--HHHHH--------------HHHHHHHHHTSCCSSCCCHHHHHHHHC-
T ss_pred             --cccCCCCCCCeECHHHHc---CCCCCchh--hHHHH--------------HHHHHHHHhCCCCCCCCCHHHHHHHhcc
Confidence              123458999999999998   67788888  99999              9999987665431    11121111110


Q ss_pred             cC-C-C---------------------CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhh
Q psy7309         157 EN-G-P---------------------STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKW  213 (454)
Q Consensus       157 ~~-~-p---------------------~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  213 (454)
                      .. + +                     ............+........+.            ...+....+||     ++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~li-----~~  307 (360)
T 3eqc_A          245 QVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPS------------GVFSLEFQDFV-----NK  307 (360)
T ss_dssp             -----------------------------CCCHHHHHHHHHHSCCCCCCT------------TTSCHHHHHHH-----HH
T ss_pred             cccccCCCCCCCcccCCCcccccccCCCCcccchhhhhHHhccCCCCCCc------------ccccHHHHHHH-----HH
Confidence            00 0 0                     00001111112222121111111            11235667777     99


Q ss_pred             hcCCCCCCCCChhhhhcCcccccCC
Q psy7309         214 CLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       214 ~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      ||+.||++|||++|+|+||||....
T Consensus       308 ~L~~dP~~Rpt~~ell~hp~~~~~~  332 (360)
T 3eqc_A          308 CLIKNPAERADLKQLMVHAFIKRSD  332 (360)
T ss_dssp             HHCSSTTTSCCHHHHHTSHHHHHHH
T ss_pred             HhhcChhhCCCHHHHhhChHhhcch
Confidence            9999999999999999999998644

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.92  E-value=5.9e-27  Score=231.14  Aligned_cols=150  Identities=27%  Similarity=0.414  Sum_probs=113.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++ .++.+||+|||++.....                          
T Consensus       149 ~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~--------------------------  202 (320)
T 3a99_A          149 ELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKD--------------------------  202 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCS--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCcccccccc--------------------------
Confidence            35788999999999999999999999999999999 678999999999875421                          


Q ss_pred             CCCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                       .......||+.|+|||++.   +..+ +.++  ||||+              |+++|||++|+.+              
T Consensus       203 -~~~~~~~gt~~y~aPE~~~---~~~~~~~~~--Di~sl--------------G~il~el~~g~~p--------------  248 (320)
T 3a99_A          203 -TVYTDFDGTRVYSPPEWIR---YHRYHGRSA--AVWSL--------------GILLYDMVCGDIP--------------  248 (320)
T ss_dssp             -SCBCCCCSCGGGSCHHHHH---HSCBCHHHH--HHHHH--------------HHHHHHHHHSSCS--------------
T ss_pred             -ccccCCCCCccCCChHHhc---cCCCCCccc--hHHhH--------------HHHHHHHHHCCCC--------------
Confidence             1233457999999999987   3444 6777  99999              9999997765532              


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       +....  ...     .....++..             .++...++|     .+||+.||++|||++|+++||||...
T Consensus       249 -f~~~~--~~~-----~~~~~~~~~-------------~~~~~~~li-----~~~l~~dp~~Rps~~~ll~hp~~~~~  300 (320)
T 3a99_A          249 -FEHDE--EII-----RGQVFFRQR-------------VSSECQHLI-----RWCLALRPSDRPTFEEIQNHPWMQDV  300 (320)
T ss_dssp             -CCSHH--HHH-----HCCCCCSSC-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             -CCChh--hhh-----ccccccccc-------------CCHHHHHHH-----HHHccCChhhCcCHHHHhcCHhhcCc
Confidence             11110  000     011112222             226667888     99999999999999999999999854

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.92  E-value=2.1e-26  Score=223.34  Aligned_cols=164  Identities=25%  Similarity=0.325  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.++.||+.||.|||++||+||||||+||+++. ++.+||+|||++.....                         ..
T Consensus       123 ~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~-------------------------~~  177 (295)
T 2clq_A          123 TIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAG-------------------------IN  177 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCC-------------------------CC
Confidence            57789999999999999999999999999999987 88999999999875421                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++..+ ...++.++  ||||+              |+++|+|++|+.+....            
T Consensus       178 ~~~~~~~~~~~y~aPE~~~~~-~~~~~~~~--Di~sl--------------G~il~~l~~g~~pf~~~------------  228 (295)
T 2clq_A          178 PCTETFTGTLQYMAPEIIDKG-PRGYGKAA--DIWSL--------------GCTIIEMATGKPPFYEL------------  228 (295)
T ss_dssp             ---CCCCCCGGGCCHHHHHHG-GGGCSHHH--HHHHH--------------HHHHHHHHHTSCTTGGG------------
T ss_pred             CcccccCCCccccChhhhcCC-CCCCCcHH--HHHHH--------------HHHHHHHHHCCCCccCC------------
Confidence            123345799999999998721 12367778  99999              99999977655421100            


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                       ..................++..             .++...++|     .+||+.||++|||++|+++||||.....
T Consensus       229 -~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~dp~~Rps~~~ll~~~~~~~~~~  287 (295)
T 2clq_A          229 -GEPQAAMFKVGMFKVHPEIPES-------------MSAEAKAFI-----LKCFEPDPDKRACANDLLVDEFLKVSSK  287 (295)
T ss_dssp             -SSHHHHHHHHHHHCCCCCCCTT-------------SCHHHHHHH-----HHTTCSSTTTSCCHHHHHTSGGGCC---
T ss_pred             -CchhHHHHhhcccccccccccc-------------CCHHHHHHH-----HHHccCChhhCCCHHHHhcChhhhhccc
Confidence             0000000000000122222322             226667888     9999999999999999999999986543

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.92  E-value=1.3e-26  Score=224.55  Aligned_cols=160  Identities=31%  Similarity=0.479  Sum_probs=118.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC---CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~---~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++   .+||+|||++.....                        
T Consensus       121 ~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~------------------------  176 (287)
T 2wei_A          121 HDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQ------------------------  176 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecC------------------------
Confidence            46889999999999999999999999999999997644   699999999875421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        ........||+.|+|||++.    ..++.++  ||||+              |+++|+++++.+              
T Consensus       177 --~~~~~~~~~~~~y~aPE~~~----~~~~~~~--Di~sl--------------G~~l~~l~~g~~--------------  220 (287)
T 2wei_A          177 --NTKMKDRIGTAYYIAPEVLR----GTYDEKC--DVWSA--------------GVILYILLSGTP--------------  220 (287)
T ss_dssp             --CSSCSCHHHHHTTCCHHHHT----TCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CCccccccCcccccChHHhc----CCCCCch--hhHhH--------------HHHHHHHHhCCC--------------
Confidence              12234457999999999986    3477788  99999              999999766543              


Q ss_pred             CCCCCchhhhhhhhhccCCC-CCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         159 GPSTGSNVQKSLQKFQKSPP-SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                       |+.+.........+..... ...+..           ...++...++|     ++||..||.+|||++|+++||||.+.
T Consensus       221 -p~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~dp~~Rps~~ell~hp~~~~~  283 (287)
T 2wei_A          221 -PFYGKNEYDILKRVETGKYAFDLPQW-----------RTISDDAKDLI-----RKMLTFHPSLRITATQCLEHPWIQKY  283 (287)
T ss_dssp             -SSCCSSHHHHHHHHHHCCCCCCSGGG-----------TTSCHHHHHHH-----HHHTCSSGGGSCCHHHHHHSHHHHHH
T ss_pred             -CCCCCCHHHHHHHHHcCCCCCCchhh-----------hhcCHHHHHHH-----HHHcccChhhCcCHHHHhcCHHHhcc
Confidence             3333333333333332211 111111           11236677888     99999999999999999999999854


Q ss_pred             C
Q psy7309         238 S  238 (454)
Q Consensus       238 ~  238 (454)
                      .
T Consensus       284 ~  284 (287)
T 2wei_A          284 S  284 (287)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.92  E-value=2.1e-26  Score=229.01  Aligned_cols=168  Identities=26%  Similarity=0.367  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||+|||+ +||+||||||+|||++.++.+||+|||++.....                          
T Consensus       151 ~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~--------------------------  204 (348)
T 2pml_X          151 QVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVD--------------------------  204 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTSCEEECCCTTCEECBT--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCCCcEEEecccccccccc--------------------------
Confidence            4688999999999999999 9999999999999999999999999999875421                          


Q ss_pred             CCCCcCcccccceeccccccccccc-cccc-cCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKA-MYNQ-FTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~-~~~~-~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                       .......||+.|+|||++.   +. .++. ++  ||||+              |+++|||++|..              
T Consensus       205 -~~~~~~~~~~~y~aPE~~~---~~~~~~~~~~--Di~sl--------------G~il~~l~~g~~--------------  250 (348)
T 2pml_X          205 -KKIKGSRGTYEFMPPEFFS---NESSYNGAKV--DIWSL--------------GICLYVMFYNVV--------------  250 (348)
T ss_dssp             -TEECSSCSCGGGCCGGGGS---SCCCEEHHHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             -ccccCCCCCcCccCchhhc---CCCCCCcchh--hHHHH--------------HHHHHHHHhCCC--------------
Confidence             1234467999999999987   33 5655 77  99999              999999766543              


Q ss_pred             CCCCCchh-hhhhhhhccCCCCCCCcccccccc------ccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         159 GPSTGSNV-QKSLQKFQKSPPSVYREWRSSFEW------STVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       159 ~p~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~------~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                       |+..... ......+. .....+|.....+..      ........++...++|     .+||+.||.+|||++|+++|
T Consensus       251 -pf~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li-----~~~L~~dP~~Rps~~e~l~h  323 (348)
T 2pml_X          251 -PFSLKISLVELFNNIR-TKNIEYPLDRNHFLYPLTNKKSTCSNNFLSNEDIDFL-----KLFLRKNPAERITSEDALKH  323 (348)
T ss_dssp             -SSCCSSCSHHHHHHHT-SCCCCCCCSSSSSTTTTCC--------CCCHHHHHHH-----HHHCCSSGGGSCCHHHHHTS
T ss_pred             -CCCCCCcHHHHHHHHh-ccCcCCccchhhhhccccccccccchhhcCHHHHHHH-----HHHccCChhhCCCHHHHhcC
Confidence             2221111 12222222 111222211100000      0000022346677788     99999999999999999999


Q ss_pred             ccccc
Q psy7309         232 PISLE  236 (454)
Q Consensus       232 p~f~~  236 (454)
                      |||..
T Consensus       324 p~f~~  328 (348)
T 2pml_X          324 EWLAD  328 (348)
T ss_dssp             GGGTT
T ss_pred             ccccC
Confidence            99984

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.92  E-value=1.3e-26  Score=223.91  Aligned_cols=153  Identities=18%  Similarity=0.233  Sum_probs=106.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++......                        ..
T Consensus       116 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~------------------------~~  171 (281)
T 1mp8_A          116 ASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDS------------------------TY  171 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccCcc------------------------cc
Confidence            467899999999999999999999999999999999999999999999865321                        11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   ...++.++  ||||+              |+++||+++ +.+               |
T Consensus       172 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~ell~~g~~---------------p  217 (281)
T 1mp8_A          172 YKASKGKLPIKWMAPESIN---FRRFTSAS--DVWMF--------------GVCMWEILMHGVK---------------P  217 (281)
T ss_dssp             -------CCGGGCCHHHHH---HCCCSHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             cccccCCCcccccChhhcc---cCCCCCcc--CchHH--------------HHHHHHHHhcCCC---------------C
Confidence            1223446788999999987   66788888  99999              999999764 442               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+.......++...             ++...+++     .+||+.||++|||+.|+++
T Consensus       218 f~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~~p~~Rps~~~l~~  269 (281)
T 1mp8_A          218 FQGVKNNDVIGRIENGERLPMPPNC-------------PPTLYSLM-----TKCWAYDPSRRPRFTELKA  269 (281)
T ss_dssp             TTTCCGGGHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCcCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHccCChhhCcCHHHHHH
Confidence            4333334444444434333333332             26667788     9999999999999998876

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.92  E-value=2.7e-26  Score=227.28  Aligned_cols=154  Identities=19%  Similarity=0.254  Sum_probs=111.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       117 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~-----------------------~~~  173 (327)
T 3lzb_A          117 QYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE-----------------------EKE  173 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCc-----------------------ccc
Confidence            357899999999999999999999999999999999999999999999865321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++|||++ |..               |
T Consensus       174 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ell~~g~~---------------p  219 (327)
T 3lzb_A          174 YHAEGGKVPIKWMALESIL---HRIYTHQS--DVWSY--------------GVTVWELMTFGSK---------------P  219 (327)
T ss_dssp             ------CCCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             ccccCCCccccccCHHHHc---CCCCChHH--HHHHH--------------HHHHHHHHHCCCC---------------C
Confidence            2233456788999999998   67788888  99999              999999766 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+...             +....+++     ++||+.||.+|||++|+++
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~ell~  271 (327)
T 3lzb_A          220 YDGIPASEISSILEKGERLPQPPIC-------------TIDVYMIM-----RKCWMIDADSRPKFRELII  271 (327)
T ss_dssp             TTTCCGGGHHHHHHTTCCCCCCTTB-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccC-------------CHHHHHHH-----HHHcCCChhHCcCHHHHHH
Confidence            4343333444444433333333332             25667777     9999999999999999886

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.92  E-value=1.7e-26  Score=221.41  Aligned_cols=154  Identities=23%  Similarity=0.344  Sum_probs=116.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++......                        ..
T Consensus       106 ~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~------------------------~~  161 (269)
T 4hcu_A          106 ETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD------------------------QY  161 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCH------------------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEecccccccccccc------------------------cc
Confidence            467899999999999999999999999999999999999999999999854321                        11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++ +.+               |
T Consensus       162 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~ll~~g~~---------------p  207 (269)
T 4hcu_A          162 TSSTGTKFPVKWASPEVFS---FSRYSSKS--DVWSF--------------GVLMWEVFSEGKI---------------P  207 (269)
T ss_dssp             HSTTSTTCCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             ccccCcccccccCCHHHhc---CCCCCchh--hhHHH--------------HHHHHHHhcCCCC---------------C
Confidence            1223456788999999987   67788888  99999              999999766 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             .++...+++     .+||+.||++|||+.|+++|
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          208 YENRSNSEVVEDISTGFRLYKPRL-------------ASTHVYQIM-----NHCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             TTTCCHHHHHHHHHTTCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHhcCccCCCCCc-------------CCHHHHHHH-----HHHccCCcccCcCHHHHHHH
Confidence            333334444444443333333322             236667788     99999999999999999875

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.92  E-value=2.1e-26  Score=229.91  Aligned_cols=155  Identities=21%  Similarity=0.315  Sum_probs=114.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       193 ~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~-----------------------~~~  249 (359)
T 3vhe_A          193 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD-----------------------PDY  249 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSC-----------------------TTC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCcEEEEeccceeeeccc-----------------------ccc
Confidence            468899999999999999999999999999999999999999999999854321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              |+++|||++ |..               |
T Consensus       250 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~---------------p  295 (359)
T 3vhe_A          250 VRKGDARLPLKWMAPETIF---DRVYTIQS--DVWSF--------------GVLLWEIFSLGAS---------------P  295 (359)
T ss_dssp             EEC--CEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHTTTSCC---------------S
T ss_pred             hhccccCCCceeEChhhhc---CCCCCchh--hhhhH--------------HHHHHHHHhcCCC---------------C
Confidence            2334567899999999998   67788888  99999              999999875 543               2


Q ss_pred             CCCchhh-hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQ-KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.... .....+........|..             .++...+++     .+||+.||.+|||++|+++|
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          296 YPGVKIDEEFCRRLKEGTRMRAPDY-------------TTPEMYQTM-----LDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             STTCCCSHHHHHHHHHTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCccchhHHHHHHHHcCCCCCCCCC-------------CCHHHHHHH-----HHHccCChhhCCCHHHHHHH
Confidence            2222211 11222222233333332             226677888     99999999999999998875

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.92  E-value=4e-26  Score=230.88  Aligned_cols=155  Identities=23%  Similarity=0.309  Sum_probs=118.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       191 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~-----------------------~~~  247 (382)
T 3tt0_A          191 KDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI-----------------------DYY  247 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCC-----------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcCCCcEEEcccCcccccccc-----------------------ccc
Confidence            368899999999999999999999999999999999999999999999754210                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              ||+++||++ +..               |
T Consensus       248 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~ellt~g~~---------------p  293 (382)
T 3tt0_A          248 KKTTNGRLPVKWMAPEALF---DRIYTHQS--DVWSF--------------GVLLWEIFTLGGS---------------P  293 (382)
T ss_dssp             CCCTTCCCGGGGSCHHHHH---SCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             ccccCCCCCcceeCHHHhc---CCCCCchh--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            2334457889999999997   67788888  99999              999999765 432               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.........+........+...             ++.+.+++     .+||+.||++|||++|++++
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          294 YPGVPVEELFKLLKEGHRMDKPSNC-------------TNELYMMM-----RDCWHAVPSQRPTFKQLVED  346 (382)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCSSC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccC-------------CHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            4444444444444444444333332             26667788     99999999999999988874

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.92  E-value=2.5e-26  Score=219.97  Aligned_cols=154  Identities=23%  Similarity=0.337  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++......                        ..
T Consensus       104 ~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~------------------------~~  159 (268)
T 3sxs_A          104 SQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDD------------------------QY  159 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTT------------------------CE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchh------------------------hh
Confidence            468899999999999999999999999999999999999999999999754221                        11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++ ++.               |
T Consensus       160 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~g~~---------------p  205 (268)
T 3sxs_A          160 VSSVGTKFPVKWSAPEVFH---YFKYSSKS--DVWAF--------------GILMWEVFSLGKM---------------P  205 (268)
T ss_dssp             EECCSCCCCGGGCCHHHHH---HSEEETTH--HHHHH--------------HHHHHHHHTTTCC---------------T
T ss_pred             hcccCCCcCcccCCHHHHh---ccCCchhh--hhHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1223445688899999987   66788888  99999              999999775 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........|..             .++...+++     .+||+.||++|||+.|+++|
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          206 YDLYTNSEVVLKVSQGHRLYRPHL-------------ASDTIYQIM-----YSCWHELPEKRPTFQQLLSS  258 (268)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCCTT-------------SCHHHHHHH-----HHTTCSSGGGSCCHHHHHHH
T ss_pred             ccccChHHHHHHHHcCCCCCCCCc-------------ChHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            333333333334433333333332             125667787     99999999999999999875

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.92  E-value=2.6e-26  Score=223.61  Aligned_cols=170  Identities=19%  Similarity=0.248  Sum_probs=122.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       126 ~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~----------------------~~~  183 (302)
T 4e5w_A          126 KQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDK----------------------EYY  183 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC----------------------CEE
T ss_pred             HHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCCC----------------------cce
Confidence            4678999999999999999999999999999999999999999999998543210                      011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||..|+|||++.   +..++.++  ||||+              |+++|++++|...................
T Consensus       184 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~p~~~~~~~~~~~~~~~~  244 (302)
T 4e5w_A          184 TVKDDRDSPVFWYAPECLM---QSKFYIAS--DVWSF--------------GVTLHELLTYCDSDSSPMALFLKMIGPTH  244 (302)
T ss_dssp             ECCCCTTCCGGGCCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHTTTCGGGSHHHHHHHHHCSCC
T ss_pred             eccCCCCCCccccCCeeec---CCCCCcch--hHHHH--------------HHHHHHHHHccCCCcchhhHHhhccCCcc
Confidence            2234457899999999997   67788888  99999              99999988766533222222222222222


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...........+........+...             ++...+++     .+||+.||.+|||++|+++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          245 GQMTVTRLVNTLKEGKRLPCPPNC-------------PDEVYQLM-----RKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             GGGHHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHTTCSSGGGSCCHHHHHH
T ss_pred             cccCHHHHHHHHhccCCCCCCCCC-------------CHHHHHHH-----HHHcCCCCCCCCCHHHHHH
Confidence            222333444444444444444332             26677888     9999999999999998875

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.92  E-value=4.9e-26  Score=223.72  Aligned_cols=152  Identities=24%  Similarity=0.307  Sum_probs=106.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..++.++.||+.||+|||++|  |+||||||+|||++.++.+||+|||+++....                         
T Consensus       137 ~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~-------------------------  191 (309)
T 3p86_A          137 RRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKAS-------------------------  191 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccc-------------------------
Confidence            357889999999999999999  99999999999999999999999999975421                         


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .........||+.|+|||++.   +..++.++  ||||+              |+++||+++++.               
T Consensus       192 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~elltg~~---------------  237 (309)
T 3p86_A          192 TFLSSKSAAGTPEWMAPEVLR---DEPSNEKS--DVYSF--------------GVILWELATLQQ---------------  237 (309)
T ss_dssp             ----------CCTTSCHHHHT---TCCCCTTH--HHHHH--------------HHHHHHHHHCCC---------------
T ss_pred             cccccccCCCCccccChhhhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------
Confidence            112234568999999999998   66788888  99999              999999776543               


Q ss_pred             CCCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         160 PSTGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       160 p~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      |+...........+. ......+|...             ++...++|     ++||+.||.+|||++|+++
T Consensus       238 Pf~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dP~~Rps~~~ll~  291 (309)
T 3p86_A          238 PWGNLNPAQVVAAVGFKCKRLEIPRNL-------------NPQVAAII-----EGCWTNEPWKRPSFATIMD  291 (309)
T ss_dssp             TTTTSCHHHHHHHHHHSCCCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhcCCCCCCCccC-------------CHHHHHHH-----HHHccCChhhCcCHHHHHH
Confidence            333333222222221 12233333332             26677888     9999999999999999886

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.92  E-value=2.9e-26  Score=224.28  Aligned_cols=155  Identities=20%  Similarity=0.267  Sum_probs=117.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++++++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       150 ~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  206 (314)
T 2ivs_A          150 GDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEE-----------------------DSY  206 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTT-----------------------SCE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccccchheEEEcCCCCEEEcccccccccccc-----------------------ccc
Confidence            368899999999999999999999999999999999999999999999754321                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|||++ +..               |
T Consensus       207 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~t~g~~---------------p  252 (314)
T 2ivs_A          207 VKRSQGRIPVKWMAIESLF---DHIYTTQS--DVWSF--------------GVLLWEIVTLGGN---------------P  252 (314)
T ss_dssp             ECSSCCCSCGGGCCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             eeccCCCCcccccChhhhc---CCCcCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1233456789999999997   67788888  99999              999999776 433               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.........+........+..             .++...+++     .+||+.||.+|||+.|++++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          253 YPGIPPERLFNLLKTGHRMERPDN-------------CSEEMYRLM-----LQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             STTCCGGGHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHhhcCCcCCCCcc-------------CCHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            333333344444443333333332             226677888     99999999999999988864

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.92  E-value=3.1e-26  Score=221.09  Aligned_cols=154  Identities=19%  Similarity=0.309  Sum_probs=116.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++......                        ..
T Consensus       120 ~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~------------------------~~  175 (283)
T 3gen_A          120 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDD------------------------EY  175 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCH------------------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEcccccccccccc------------------------cc
Confidence            468899999999999999999999999999999999999999999999854321                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++ ++.               |
T Consensus       176 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~~l~~l~t~g~~---------------p  221 (283)
T 3gen_A          176 TSSVGSKFPVRWSPPEVLM---YSKFSSKS--DIWAF--------------GVLMWEIYSLGKM---------------P  221 (283)
T ss_dssp             HSTTSTTSCGGGCCHHHHH---HCCCSHHH--HHHHH--------------HHHHHHHHTTTCC---------------T
T ss_pred             ccccCCccCcccCCHHHhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223345788999999988   66788888  99999              999999875 543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             .++...+++     .+||+.||.+|||++|+++|
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~ll~~  274 (283)
T 3gen_A          222 YERFTNSETAEHIAQGLRLYRPHL-------------ASEKVYTIM-----YSCWHEKADERPTFKILLSN  274 (283)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHTTCSSGGGSCCHHHHHHH
T ss_pred             ccccChhHHHHHHhcccCCCCCCc-------------CCHHHHHHH-----HHHccCChhHCcCHHHHHHH
Confidence            333333333333333333333322             125667788     99999999999999998875

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.92  E-value=5.4e-26  Score=225.36  Aligned_cols=154  Identities=19%  Similarity=0.245  Sum_probs=115.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       174 ~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  230 (343)
T 1luf_A          174 AEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSA-----------------------DYY  230 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGG-----------------------GCB
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEECCCCeEEEeecCCCcccccC-----------------------ccc
Confidence            357889999999999999999999999999999999999999999999865421                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|||++ |..               |
T Consensus       231 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~t~g~~---------------p  276 (343)
T 1luf_A          231 KADGNDAIPIRWMPPESIF---YNRYTTES--DVWAY--------------GVVLWEIFSYGLQ---------------P  276 (343)
T ss_dssp             C----CCBCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------T
T ss_pred             cccCCCcccceecChhhhc---cCCcCccc--ccHHH--------------HHHHHHHHhcCCC---------------c
Confidence            2234457899999999987   66788888  99999              999999776 442               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........|...             ++...+++     ++||+.||.+|||+.++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~~p~~Rps~~~~~~  328 (343)
T 1luf_A          277 YYGMAHEEVIYYVRDGNILACPENC-------------PLELYNLM-----RLCWSKLPADRPSFCSIHR  328 (343)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCChHHHHHHHhCCCcCCCCCCC-------------CHHHHHHH-----HHHcccCcccCCCHHHHHH
Confidence            3333333344444433333333332             25667788     9999999999999998876

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.92  E-value=4.2e-26  Score=222.29  Aligned_cols=162  Identities=25%  Similarity=0.335  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.....                        ...
T Consensus       111 ~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------------------------~~~  166 (294)
T 4eqm_A          111 DTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSE------------------------TSL  166 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCcccccc------------------------ccc
Confidence            46889999999999999999999999999999999999999999999985432                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              |+++|+|++|+.               |+
T Consensus       167 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~ll~g~~---------------pf  212 (294)
T 4eqm_A          167 TQTNHVLGTVQYFSPEQAK---GEATDECT--DIYSI--------------GIVLYEMLVGEP---------------PF  212 (294)
T ss_dssp             --------CCSSCCHHHHH---TCCCCTTH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             cccCccccCccccCHhHhc---CCCCCchH--hHHHH--------------HHHHHHHHhCCC---------------CC
Confidence            2234467999999999987   66788888  99999              999999776553               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+........+......+..+....         ...++...++|     .+||+.||++||+..+.+.+.|..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~l~~li-----~~~l~~dp~~R~~~~~~l~~~l~~  272 (294)
T 4eqm_A          213 NGETAVSIAIKHIQDSVPNVTTDVR---------KDIPQSLSNVI-----LRATEKDKANRYKTIQEMKDDLSS  272 (294)
T ss_dssp             CSSCHHHHHHHHHSSCCCCHHHHSC---------TTSCHHHHHHH-----HHHSCSSGGGSCSSHHHHHHHHHT
T ss_pred             CCCChHHHHHHHhhccCCCcchhcc---------cCCCHHHHHHH-----HHHhcCCHhHccccHHHHHHHHHH
Confidence            3333222222222122221111110         11236667788     999999999999777777777654

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.91  E-value=5.3e-26  Score=219.44  Aligned_cols=154  Identities=18%  Similarity=0.220  Sum_probs=112.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                        ...
T Consensus       113 ~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------------------------~~~  168 (281)
T 3cc6_A          113 LTLVLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIED------------------------EDY  168 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCccccc------------------------ccc
Confidence            35788999999999999999999999999999999999999999999985432                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++ |+.               |
T Consensus       169 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~llt~g~~---------------p  214 (281)
T 3cc6_A          169 YKASVTRLPIKWMSPESIN---FRRFTTAS--DVWMF--------------AVCMWEILSFGKQ---------------P  214 (281)
T ss_dssp             ----CCCCCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------T
T ss_pred             cccccCCCCcceeCchhhc---cCCCCchh--ccHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223456788999999987   66788888  99999              999999775 543               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             .++...+++     .+||..||++|||+.|++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          215 FFWLENKDVIGVLEKGDRLPKPDL-------------CPPVLYTLM-----TRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             TTTSCGGGHHHHHHHTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             cccCChHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHccCCchhCcCHHHHHHH
Confidence            222222223333332333222322             225667788     99999999999999988863

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.91  E-value=5.6e-26  Score=224.82  Aligned_cols=155  Identities=21%  Similarity=0.257  Sum_probs=114.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++......                      ...
T Consensus       151 ~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~----------------------~~~  208 (325)
T 3kul_A          151 MQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDP----------------------DAA  208 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC--------------------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCc----------------------cce
Confidence            4688999999999999999999999999999999999999999999998543210                      011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   +..|+.++  ||||+              |+++||+++ |..               |
T Consensus       209 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ell~~g~~---------------p  254 (325)
T 3kul_A          209 YTTTGGKIPIRWTAPEAIA---FRTFSSAS--DVWSF--------------GVVMWEVLAYGER---------------P  254 (325)
T ss_dssp             EECC---CCGGGSCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eeccCCCCcccccCHhHhc---CCCCCcHH--HHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1223346688999999997   67788888  99999              999999765 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+...             ++...++|     .+||..||.+|||+.|+++
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~eil~  306 (325)
T 3kul_A          255 YWNMTNRDVISSVEEGYRLPAPMGC-------------PHALHQLM-----LDCWHKDRAQRPRFSQIVS  306 (325)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             cccCCHHHHHHHHHcCCCCCCCCCc-------------CHHHHHHH-----HHHccCChhhCcCHHHHHH
Confidence            3344444444444433333333322             25667788     9999999999999998875

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.91  E-value=5.1e-26  Score=224.72  Aligned_cols=171  Identities=23%  Similarity=0.268  Sum_probs=120.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       127 ~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~----------------------~~~  184 (327)
T 3lxl_A          127 SRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDK----------------------DYY  184 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTC----------------------SEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCC----------------------ccc
Confidence            4688999999999999999999999999999999999999999999998543210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+++++..+................
T Consensus       185 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~ll~g~~p~~~~~~~~~~~~~~~~  245 (327)
T 3lxl_A          185 VVREPGQSPIFWYAPESLS---DNIFSRQS--DVWSF--------------GVVLYELFTYCDKSCSPSAEFLRMMGCER  245 (327)
T ss_dssp             ECSSCCCSCGGGSCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHTTTCGGGSHHHHHHHHCC---
T ss_pred             eeeccCCccccccCHHHhc---cCCCChHH--hHHHH--------------HHHHHHHHhCCCCCccccchhhhhccccc
Confidence            1234457899999999987   67788888  99999              99999987765432222211112111122


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      ...........+........+..             .++...++|     .+||+.||++|||++|++++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          246 DVPALSRLLELLEEGQRLPAPPA-------------CPAEVHELM-----KLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             -CCHHHHHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             ccccHHHHHHHhhcccCCCCCCc-------------ccHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            22223333344443333333333             226677888     99999999999999999754

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.91  E-value=5.4e-26  Score=222.73  Aligned_cols=151  Identities=28%  Similarity=0.384  Sum_probs=113.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||+|||++||+||||||+||+++ .++.+||+|||++.....                          
T Consensus       139 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~--------------------------  192 (312)
T 2iwi_A          139 GPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHD--------------------------  192 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCS--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhhhccc--------------------------
Confidence            46789999999999999999999999999999999 788999999999875421                          


Q ss_pred             CCCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                       .......||+.|+|||++.   +..+ +.++  ||||+              |+++|++++|+..              
T Consensus       193 -~~~~~~~~~~~y~aPE~~~---~~~~~~~~~--Di~sl--------------G~il~~l~~g~~p--------------  238 (312)
T 2iwi_A          193 -EPYTDFDGTRVYSPPEWIS---RHQYHALPA--TVWSL--------------GILLYDMVCGDIP--------------  238 (312)
T ss_dssp             -SCBCCCCSCTTTSCHHHHH---HSCBCHHHH--HHHHH--------------HHHHHHHHHSSCS--------------
T ss_pred             -CcccccCCcccccCceeee---cCCCCCccc--hHHHH--------------HHHHHHHHHCCCC--------------
Confidence             1234457999999999987   3444 4467  99999              9999997765532              


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                       +....  ...     .....++..             .++...++|     .+||+.||++|||++|+++||||....
T Consensus       239 -f~~~~--~~~-----~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~e~l~~~~~~~~~  291 (312)
T 2iwi_A          239 -FERDQ--EIL-----EAELHFPAH-------------VSPDCCALI-----RRCLAPKPSSRPSLEEILLDPWMQTPA  291 (312)
T ss_dssp             -CCSHH--HHH-----HTCCCCCTT-------------SCHHHHHHH-----HHHTCSSTTTSCCHHHHHHSTTTCC--
T ss_pred             -CCChH--HHh-----hhccCCccc-------------CCHHHHHHH-----HHHccCChhhCcCHHHHhcChhhcCch
Confidence             11100  000     011122222             225667788     999999999999999999999998654

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.91  E-value=7.7e-26  Score=219.85  Aligned_cols=170  Identities=19%  Similarity=0.250  Sum_probs=113.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       114 ~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~----------------------~~~  171 (295)
T 3ugc_A          114 IKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK----------------------EFF  171 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCc----------------------cee
Confidence            3578999999999999999999999999999999999999999999998653210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC-CC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN-GP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~-~p  160 (454)
                      .......||..|+|||++.   +..++.++  ||||+              |+++||++++..+............. .+
T Consensus       172 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~g~~~~~~~~~~~~~~~~~~~  232 (295)
T 3ugc_A          172 KVKEPGESPIFWYAPESLT---ESKFSVAS--DVWSF--------------GVVLYELFTYIEKSKSPPAEFMRMIGNDK  232 (295)
T ss_dssp             ----CTTCGGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHHTTCTTCSHHHHHHHHHCTTC
T ss_pred             eeccCCCCccceeCcHHhc---CCCCChHH--HHHHH--------------HHHHHHHHhcccccCCChHHHHhhhcCcc
Confidence            2233456788999999998   67788888  99999              99999977654321111111111111 11


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ............+........|...             ++...+++     .+||+.||++|||++|+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          233 QGQMIVFHLIELLKNNGRLPRPDGC-------------PDEIYMIM-----TECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             CTHHHHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHSCSSGGGSCCHHHHHH
T ss_pred             ccchhHHHHHHHHhccCcCCCCcCc-------------CHHHHHHH-----HHHcCCChhhCCCHHHHHH
Confidence            1111222333333333333333332             26677788     9999999999999998875

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=1.7e-25  Score=217.20  Aligned_cols=156  Identities=21%  Similarity=0.245  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+++.......                     ...
T Consensus       124 ~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~---------------------~~~  182 (298)
T 3pls_A          124 KDLISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREY---------------------YSV  182 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGG---------------------GCS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcc---------------------ccc
Confidence            46789999999999999999999999999999999999999999999975432110                     122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++ +.+               |
T Consensus       183 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~~---------------~  228 (298)
T 3pls_A          183 QQHRHARLPVKWTALESLQ---TYRFTTKS--DVWSF--------------GVLLWELLTRGAP---------------P  228 (298)
T ss_dssp             CCSSCTTCGGGGSCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHTSCC---------------T
T ss_pred             ccCcCCCCCccccChhhhc---cCCCChhh--chhhH--------------HHHHHHHhhCCCC---------------C
Confidence            3344567899999999998   66788888  99999              999999765 332               2


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .++...+++     .+||+.||.+|||++++++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~ll~  280 (298)
T 3pls_A          229 YRHIDPFDLTHFLAQGRRLPQPEY-------------CPDSLYQVM-----QQCWEADPAVRPTFRVLVG  280 (298)
T ss_dssp             TTTSCGGGHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CccCCHHHHHHHhhcCCCCCCCcc-------------chHHHHHHH-----HHHccCChhhCcCHHHHHH
Confidence            223333333333333333333332             125667788     9999999999999998875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.91  E-value=1.2e-25  Score=218.66  Aligned_cols=157  Identities=20%  Similarity=0.219  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||+|+.......                     ...
T Consensus       128 ~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~---------------------~~~  186 (298)
T 3f66_A          128 KDLIGFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEY---------------------YSV  186 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGG---------------------CBC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccch---------------------hcc
Confidence            46788999999999999999999999999999999999999999999985432110                     112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+++++..              .|+
T Consensus       187 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~~~--------------~~~  233 (298)
T 3f66_A          187 HNKTGAKLPVKWMALESLQ---TQKFTTKS--DVWSF--------------GVLLWELMTRGA--------------PPY  233 (298)
T ss_dssp             -----CCBCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSC--------------CSS
T ss_pred             ccccCCCCCccccChHHhc---CCCCChHH--HHHHH--------------HHHHHHHHhCCC--------------CCC
Confidence            2344567899999999997   67788888  99999              999999766321              133


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...........+........+...             ++...+++     .+||+.||.+|||++|+++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~~p~~Rps~~ell~  284 (298)
T 3f66_A          234 PDVNTFDITVYLLQGRRLLQPEYC-------------PDPLYEVM-----LKCWHPKAEMRPSFSELVS  284 (298)
T ss_dssp             TTSCTTTHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             ccCCHHHHHHHHhcCCCCCCCccC-------------CHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            333333333333333333333322             25567787     9999999999999998875

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.91  E-value=3.6e-26  Score=221.97  Aligned_cols=162  Identities=14%  Similarity=0.125  Sum_probs=111.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC-----eEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-----VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~-----vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.     +||+|||+|.........                  
T Consensus       106 ~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~------------------  167 (298)
T 1csn_A          106 KTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK------------------  167 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECcccccccccccc------------------
Confidence            468899999999999999999999999999999987776     999999999855321100                  


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                      ............||+.|+|||++.   +..++.++  ||||+              |+++|||++|+.            
T Consensus       168 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~g~~------------  216 (298)
T 1csn_A          168 QHIPYREKKNLSGTARYMSINTHL---GREQSRRD--DLEAL--------------GHVFMYFLRGSL------------  216 (298)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC------------
T ss_pred             ccccccCccCCCCCcccCCchhhc---CCCCChHH--HHHHH--------------HHHHHHHHcCCC------------
Confidence            001122345678999999999987   66788888  99999              999999776553            


Q ss_pred             cCCCCCCc---hhhhhhhhhccCC-CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         157 ENGPSTGS---NVQKSLQKFQKSP-PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       157 ~~~p~~~~---~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                         |+...   ........+.... ....+...          ...++...+++     .+||+.||++|||++++++
T Consensus       217 ---pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~li-----~~~l~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          217 ---PWQGLKAATNKQKYERIGEKKQSTPLRELC----------AGFPEEFYKYM-----HYARNLAFDATPDYDYLQG  276 (298)
T ss_dssp             ---TTSSCCSCCHHHHHHHHHHHHHHSCHHHHT----------TTSCHHHHHHH-----HHHHHCCTTCCCCHHHHHH
T ss_pred             ---CcchhhccccHHHHHHHHhhccCccHHHHH----------hhCcHHHHHHH-----HHHhcCCcccCCCHHHHHH
Confidence               11110   1111111111000 00011100          11236677888     9999999999999998875

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.91  E-value=8.4e-26  Score=222.16  Aligned_cols=155  Identities=19%  Similarity=0.324  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......                       ..
T Consensus       138 ~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~-----------------------~~  194 (322)
T 1p4o_A          138 SKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETD-----------------------YY  194 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGG-----------------------CE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEECcCcccccccccc-----------------------cc
Confidence            3678899999999999999999999999999999999999999999998653211                       11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++ +..               |
T Consensus       195 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p  240 (322)
T 1p4o_A          195 RKGGKGLLPVRWMSPESLK---DGVFTTYS--DVWSF--------------GVVLWEIATLAEQ---------------P  240 (322)
T ss_dssp             EGGGSSEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHHTSCC---------------T
T ss_pred             ccccCCCCCCCccChhhhc---cCCCCchh--hHHHH--------------HHHHHHHHhcCCC---------------c
Confidence            1233457899999999987   66788888  99999              999999765 332               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             .++...++|     .+||+.||.+|||+.|+++|
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~e~l~~  293 (322)
T 1p4o_A          241 YQGLSNEQVLRFVMEGGLLDKPDN-------------CPDMLFELM-----RMCWQYNPKMRPSFLEIISS  293 (322)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             cccCCHHHHHHHHHcCCcCCCCCC-------------CCHHHHHHH-----HHHcCCCcccCcCHHHHHHH
Confidence            333333333333332332222222             125667788     99999999999999999976

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=8.4e-26  Score=228.14  Aligned_cols=157  Identities=20%  Similarity=0.252  Sum_probs=106.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.......                     ...
T Consensus       192 ~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~---------------------~~~  250 (373)
T 3c1x_A          192 KDLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF---------------------DSV  250 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeecccccccccccc---------------------ccc
Confidence            35788999999999999999999999999999999999999999999986532100                     111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++||+++ +.+               |
T Consensus       251 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--DvwSl--------------G~il~ellt~~~~---------------p  296 (373)
T 3c1x_A          251 HNKTGAKLPVKWMALESLQ---TQKFTTKS--DVWSF--------------GVLLWELMTRGAP---------------P  296 (373)
T ss_dssp             -------CCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             cccCCCCCcccccChHHhc---CCCCCcHH--HHHHH--------------HHHHHHHHhCcCC---------------C
Confidence            2234457789999999987   67788888  99999              999999776 332               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...+.......+........|...             ++...+++     .+||+.||++|||++|++++
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          297 YPDVNTFDITVYLLQGRRLLQPEYC-------------PDPLYEVM-----LKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             CTTSCSSCHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            3333333333333333333333322             25667787     99999999999999988863

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.91  E-value=6.2e-26  Score=218.56  Aligned_cols=152  Identities=30%  Similarity=0.454  Sum_probs=116.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.....                          .
T Consensus       122 ~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~--------------------------~  175 (284)
T 2a19_B          122 VLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKN--------------------------D  175 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEESSC--------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECcchhheeccc--------------------------c
Confidence            35789999999999999999999999999999999999999999999875421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHH--HHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEE--LKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~--l~~~i~~~~~  159 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|+++.......  ....+.    
T Consensus       176 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~~~~~~~~~~~~~~~~----  232 (284)
T 2a19_B          176 GKRTRSKGTLRYMSPEQIS---SQDYGKEV--DLYAL--------------GLILAELLHVCDTAFETSKFFTDLR----  232 (284)
T ss_dssp             SCCCCCCSCCTTSCHHHHH---CSCCCTHH--HHHHH--------------HHHHHHHHSCCSSHHHHHHHHHHHH----
T ss_pred             ccccccCCcccccChhhhc---cCCCcchh--hhHHH--------------HHHHHHHHhcCCcchhHHHHHHHhh----
Confidence            2234457999999999987   56788888  99999              99999987765433221  111111    


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                                      .  ..++..             .++...++|     .+||+.||.+|||+.|+++|.+.....
T Consensus       233 ----------------~--~~~~~~-------------~~~~~~~li-----~~~l~~dp~~Rps~~e~l~~l~~~~~~  275 (284)
T 2a19_B          233 ----------------D--GIISDI-------------FDKKEKTLL-----QKLLSKKPEDRPNTSEILRTLTVWKKS  275 (284)
T ss_dssp             ----------------T--TCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSCCHHHHHHHHHHHTC-
T ss_pred             ----------------c--cccccc-------------CCHHHHHHH-----HHHccCChhhCcCHHHHHHHHHHHhhC
Confidence                            1  111211             125567788     999999999999999999998866533

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.91  E-value=1.1e-25  Score=220.62  Aligned_cols=155  Identities=17%  Similarity=0.186  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       147 ~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  203 (313)
T 3brb_A          147 QTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSG-----------------------DYY  203 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSCSCC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeecCcceecccc-----------------------ccc
Confidence            468999999999999999999999999999999999999999999999865321                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   +..++.++  ||||+              |+++|+|++ +.+               |
T Consensus       204 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p  249 (313)
T 3brb_A          204 RQGRIAKMPVKWIAIESLA---DRVYTSKS--DVWAF--------------GVTMWEIATRGMT---------------P  249 (313)
T ss_dssp             -------CCGGGSCHHHHH---SSCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             CcccccCCCccccCchhhc---CCCccchh--hhHHH--------------HHHHHHHHhcCCC---------------C
Confidence            1233456788999999997   67788888  99999              999999776 432               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+...             ++...++|     .+||..||.+|||+.+++++
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          250 YPGVQNHEMYDYLLHGHRLKQPEDC-------------LDELYEIM-----YSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             STTCCGGGHHHHHHTTCCCCCBTTC-------------CHHHHHHH-----HHTTCSSGGGSCCHHHHHHH
T ss_pred             CccCCHHHHHHHHHcCCCCCCCccc-------------cHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            3333333333334333333333332             25667788     99999999999999988763

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=7.5e-26  Score=219.20  Aligned_cols=158  Identities=17%  Similarity=0.151  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+||+++.++.+||+|||++.......                      ...
T Consensus       110 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~----------------------~~~  167 (287)
T 1u59_A          110 SNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD----------------------SYY  167 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS----------------------CEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCc----------------------cee
Confidence            4688999999999999999999999999999999999999999999998543210                      011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++||+++ |+.               |
T Consensus       168 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~---------------p  213 (287)
T 1u59_A          168 TARSAGKWPLKWYAPECIN---FRKFSSRS--DVWSY--------------GVTMWEALSYGQK---------------P  213 (287)
T ss_dssp             CCCCSSCCCGGGCCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eccccccccccccCHHHhc---cCCCCchh--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            2233456789999999987   66788888  99999              999999775 543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      +...........+.......++...             ++...++|     .+||+.||++|||+.|+++|.+
T Consensus       214 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~~p~~Rps~~~l~~~l~  268 (287)
T 1u59_A          214 YKKMKGPEVMAFIEQGKRMECPPEC-------------PPELYALM-----SDCWIYKWEDRPDFLTVEQRMR  268 (287)
T ss_dssp             TTTCCTHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHTTCSSGGGSCCHHHHHHHHH
T ss_pred             cccCCHHHHHHHHhcCCcCCCCCCc-------------CHHHHHHH-----HHHcCCChhhCcCHHHHHHHHH
Confidence            3333333333444433333333332             26677888     9999999999999999998654

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.91  E-value=1.3e-25  Score=221.77  Aligned_cols=162  Identities=20%  Similarity=0.230  Sum_probs=119.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC---CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE---DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~---~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.+   ..+||+|||++......                       
T Consensus       140 ~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~-----------------------  196 (327)
T 2yfx_A          140 LDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRA-----------------------  196 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccc-----------------------
Confidence            3578999999999999999999999999999999854   46999999999865321                       


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhc
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRE  157 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~  157 (454)
                      ..........||+.|+|||++.   +..++.++  ||||+              |+++|+|++ |..             
T Consensus       197 ~~~~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~-------------  244 (327)
T 2yfx_A          197 SYYRKGGCAMLPVKWMPPEAFM---EGIFTSKT--DTWSF--------------GVLLWEIFSLGYM-------------  244 (327)
T ss_dssp             -----CCGGGSCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC-------------
T ss_pred             cccccCCCcCCCcceeCHhHhc---CCCCCchh--hHHHH--------------HHHHHHHHcCCCC-------------
Confidence            1112234467899999999987   56788888  99999              999999775 432             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                        |+...........+........+...             ++...++|     .+||+.||.+|||+.|+++|.|+...
T Consensus       245 --p~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~~ll~~l~~~~~  304 (327)
T 2yfx_A          245 --PYPSKSNQEVLEFVTSGGRMDPPKNC-------------PGPVYRIM-----TQCWQHQPEDRPNFAIILERIEYCTQ  304 (327)
T ss_dssp             --SSTTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             --CCCCcCHHHHHHHHhcCCCCCCCCCC-------------CHHHHHHH-----HHHhcCChhhCcCHHHHHHHHHHHhc
Confidence              33333333333333333333333321             25667777     99999999999999999999987654


Q ss_pred             C
Q psy7309         238 S  238 (454)
Q Consensus       238 ~  238 (454)
                      .
T Consensus       305 ~  305 (327)
T 2yfx_A          305 D  305 (327)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.91  E-value=2.6e-25  Score=218.87  Aligned_cols=100  Identities=26%  Similarity=0.457  Sum_probs=81.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE----ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI----DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl----~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.++.||+.||+|||++||+||||||+|||+    +.++.+||+|||+|+....                       
T Consensus       112 ~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~-----------------------  168 (319)
T 4euu_A          112 SEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED-----------------------  168 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCT-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCC-----------------------
Confidence            4688999999999999999999999999999999    7777899999999975421                       


Q ss_pred             ccCCCCCcCcccccceecccccccc-----ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHG-----VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDR  143 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~-----~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~  143 (454)
                         ........||+.|+|||++...     .+..|+.++  ||||+              ||++|||++|+
T Consensus       169 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~--Diwsl--------------G~il~el~~g~  220 (319)
T 4euu_A          169 ---DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATV--DLWSI--------------GVTFYHAATGS  220 (319)
T ss_dssp             ---TCCBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTH--HHHHH--------------HHHHHHHHHSS
T ss_pred             ---CCceeecccCCCccCHHHhhhccccccccCCCCcHH--HHHHH--------------HHHHHHHHhCC
Confidence               2233456799999999997511     135678888  99999              88888876654

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.91  E-value=1.1e-25  Score=227.24  Aligned_cols=154  Identities=21%  Similarity=0.263  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+......                       ..
T Consensus       213 ~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~-----------------------~~  269 (377)
T 3cbl_A          213 KTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGV-----------------------YA  269 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSE-----------------------EE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCc-----------------------ee
Confidence            4678999999999999999999999999999999999999999999987532100                       00


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   ...|+.++  ||||+              ||++||+++ |..               |
T Consensus       270 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~il~el~t~g~~---------------p  315 (377)
T 3cbl_A          270 ASGGLRQVPVKWTAPEALN---YGRYSSES--DVWSF--------------GILLWETFSLGAS---------------P  315 (377)
T ss_dssp             CCSSCCEEEGGGSCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             ecCCCCCCCcCcCCHhHhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1112235678899999997   67788888  99999              999999775 432               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........|...             ++...++|     .+||+.||++|||++++++
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~dP~~Rps~~~i~~  367 (377)
T 3cbl_A          316 YPNLSNQQTREFVEKGGRLPCPELC-------------PDAVFRLM-----EQCWAYEPGQRPSFSTIYQ  367 (377)
T ss_dssp             STTSCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHcCCCchhCcCHHHHHH
Confidence            4444444444444444444444332             25667788     9999999999999998875

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.91  E-value=8.9e-26  Score=222.95  Aligned_cols=152  Identities=22%  Similarity=0.242  Sum_probs=113.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+++....                          .
T Consensus       142 ~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~--------------------------~  195 (327)
T 1fvr_A          142 QQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV--------------------------Y  195 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCE--------------------------E
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEEEcccCcCccccc--------------------------c
Confidence            36789999999999999999999999999999999999999999999873211                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   +..++.++  ||||+              |+++|||++ |+.               |
T Consensus       196 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~---------------p  241 (327)
T 1fvr_A          196 VKKTMGRLPVRWMAIESLN---YSVYTTNS--DVWSY--------------GVLLWEIVSLGGT---------------P  241 (327)
T ss_dssp             CCC----CCTTTCCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             ccccCCCCCccccChhhhc---cccCCchh--cchHH--------------HHHHHHHHcCCCC---------------C
Confidence            1223346788999999987   66788888  99999              999999875 543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.........+........+..             .++...++|     .+||+.||.+|||++|++++
T Consensus       242 f~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          242 YCGMTCAELYEKLPQGYRLEKPLN-------------CDDEVYDLM-----RQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             TTTCCHHHHHHHGGGTCCCCCCTT-------------BCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCcHHHHHHHhhcCCCCCCCCC-------------CCHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            333333334444433322222222             226677888     99999999999999999875

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.91  E-value=1.2e-25  Score=232.75  Aligned_cols=153  Identities=24%  Similarity=0.321  Sum_probs=115.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....                        ..
T Consensus       284 ~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~------------------------~~  339 (454)
T 1qcf_A          284 PKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDN------------------------EY  339 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCH------------------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCC------------------------ce
Confidence            357889999999999999999999999999999999999999999999864211                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|..|+|||++.   ...|+.++  ||||+              ||++||+++ |+.               |
T Consensus       340 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dvwsl--------------G~~l~el~t~g~~---------------P  385 (454)
T 1qcf_A          340 TAREGAKFPIKWTAPEAIN---FGSFTIKS--DVWSF--------------GILLMEIVTYGRI---------------P  385 (454)
T ss_dssp             HTTCSSSSCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             eccCCCcccccccCHHHhc---cCCCCcHH--HHHhH--------------HHHHHHHHhCCCC---------------C
Confidence            1123345688999999997   66788888  99999              999999776 543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........|...             ++...++|     .+||+.||++|||+++++.
T Consensus       386 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~dp~~RPt~~~i~~  437 (454)
T 1qcf_A          386 YPGMSNPEVIRALERGYRMPRPENC-------------PEELYNIM-----MRCWKNRPEERPTFEYIQS  437 (454)
T ss_dssp             STTCCHHHHHHHHHHTCCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHccCChhHCcCHHHHHH
Confidence            4444444444444433333333332             26667788     9999999999999998875

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=1.1e-25  Score=223.53  Aligned_cols=157  Identities=22%  Similarity=0.281  Sum_probs=115.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       172 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~-----------------------~~~  228 (344)
T 1rjb_A          172 EDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSD-----------------------SNY  228 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGC-----------------------TTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEEcCCCcEEeCCCccCcccccC-----------------------ccc
Confidence            357889999999999999999999999999999999999999999999865321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++ |..               |
T Consensus       229 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~t~g~~---------------p  274 (344)
T 1rjb_A          229 VVRGNARLPVKWMAPESLF---EGIYTIKS--DVWSY--------------GILLWEIFSLGVN---------------P  274 (344)
T ss_dssp             EEETTEEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHTTTSCC---------------S
T ss_pred             eeccCccCccCccCHHHhc---cCCCChhH--hHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1233457889999999987   66788888  99999              999999875 543               2


Q ss_pred             CCCchhhhhh-hhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         161 STGSNVQKSL-QKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       161 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      +.+......+ ..+........+..             .++...+++     .+||+.||.+|||+.|+++|..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~~l~~~l~  330 (344)
T 1rjb_A          275 YPGIPVDANFYKLIQNGFKMDQPFY-------------ATEEIYIIM-----QSCWAFDSRKRPSFPNLTSFLG  330 (344)
T ss_dssp             STTCCCSHHHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHHHH
T ss_pred             cccCCcHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCCchhCcCHHHHHHHHH
Confidence            2222211111 11221222222222             226677788     9999999999999999988643

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.91  E-value=1.5e-25  Score=216.65  Aligned_cols=153  Identities=22%  Similarity=0.266  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                        ...
T Consensus       111 ~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~------------------------~~~  166 (288)
T 3kfa_A          111 VVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG------------------------DTY  166 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCS------------------------SSS
T ss_pred             hHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccC------------------------Ccc
Confidence            35789999999999999999999999999999999999999999999985431                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++ +.+               |
T Consensus       167 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~ll~~g~~---------------p  212 (288)
T 3kfa_A          167 TAHAGAKFPIKWTAPESLA---YNKFSIKS--DVWAF--------------GVLLWEIATYGMS---------------P  212 (288)
T ss_dssp             EEETTEEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             ccccCCccccCcCChhhhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            2234456788999999987   66788888  99999              999999766 432               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+...             ++...+++     ++||..||.+|||++|+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~~~~~  264 (288)
T 3kfa_A          213 YPGIDLSQVYELLEKDYRMERPEGC-------------PEKVYELM-----RACWQWNPSDRPSFAEIHQ  264 (288)
T ss_dssp             STTCCGGGHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHhccCCCCCCCCC-------------CHHHHHHH-----HHHhCCChhhCcCHHHHHH
Confidence            3333333333344333333333322             26667888     9999999999999998875

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.91  E-value=1.4e-25  Score=217.63  Aligned_cols=163  Identities=19%  Similarity=0.172  Sum_probs=110.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE---ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl---~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||+|||++||+||||||+|||+   +.++.+||+|||++.........                  ..
T Consensus       105 ~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~------------------~~  166 (296)
T 3uzp_A          105 KTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH------------------QH  166 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTC------------------CB
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccc------------------cc
Confidence            4688999999999999999999999999999999   47889999999999855321100                  00


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      ..........||+.|+|||++.   +..++.++  ||||+              |+++|||++|+.              
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~--------------  213 (296)
T 3uzp_A          167 IPYRENKNLTGTARYASINTHL---GIEQSRRD--DLESL--------------GYVLMYFNLGSL--------------  213 (296)
T ss_dssp             CCCCCSCCCCSCTTTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             cccccccccccccccCChhhhc---CCCCCcch--hhHHH--------------HHHHHHHHhCCC--------------
Confidence            1112345678999999999998   66788888  99999              999999766553              


Q ss_pred             CCCCCc---hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         159 GPSTGS---NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       159 ~p~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                       |+...   ........+... ....+..       . .....++...+++     .+||+.||++|||++++++
T Consensus       214 -pf~~~~~~~~~~~~~~~~~~-~~~~~~~-------~-~~~~~~~~l~~li-----~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          214 -PWQGLKAATKRQKYERISEK-KMSTPIE-------V-LCKGYPSEFATYL-----NFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             -TTSSCCCSSSSSHHHHHHHH-HHHSCHH-------H-HTTTSCHHHHHHH-----HHHHTSCTTCCCCHHHHHH
T ss_pred             -CCCCcCchhhhhhhhhhccc-ccCCchH-------H-HHhhCCHHHHHHH-----HHHHhcCcCcCCCHHHHHH
Confidence             11110   000011110000 0000000       0 0011225667788     9999999999999998875

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.91  E-value=1.2e-25  Score=214.76  Aligned_cols=154  Identities=23%  Similarity=0.344  Sum_probs=114.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+||+++.++.+||+|||++......                        ..
T Consensus       104 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~------------------------~~  159 (267)
T 3t9t_A          104 ETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDD------------------------QY  159 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCH------------------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccc------------------------cc
Confidence            357899999999999999999999999999999999999999999999854211                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++ +++               |
T Consensus       160 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~g~~---------------p  205 (267)
T 3t9t_A          160 TSSTGTKFPVKWASPEVFS---FSRYSSKS--DVWSF--------------GVLMWEVFSEGKI---------------P  205 (267)
T ss_dssp             HSTTSTTCCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             cccccccccccccChhhhc---CCCccchh--chhhh--------------HHHHHHHhccCCC---------------C
Confidence            1223356788999999987   66788888  99999              999999776 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             .++...+++     .+||+.||.+|||++|++++
T Consensus       206 ~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          206 YENRSNSEVVEDISTGFRLYKPRL-------------ASTHVYQIM-----NHCWRERPEDRPAFSRLLRQ  258 (267)
T ss_dssp             TTTCCHHHHHHHHHTTCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHhcCCcCCCCcc-------------CcHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            333333333333333322222222             235667788     99999999999999988863

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.91  E-value=1e-25  Score=219.14  Aligned_cols=174  Identities=22%  Similarity=0.242  Sum_probs=111.4

Q ss_pred             hhHHHHHHHHHHHHHHHH--------HcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIH--------SQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID   73 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH--------~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~   73 (454)
                      ..+++++.|++.||+|||        ++||+||||||+|||++.++.+||+|||+|+.......                
T Consensus       105 ~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~----------------  168 (301)
T 3q4u_A          105 VSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTN----------------  168 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeecccccc----------------
Confidence            467899999999999999        99999999999999999999999999999975432100                


Q ss_pred             CCCcccCCCCCcCcccccceeccccccccccc---cccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHH
Q psy7309          74 STAFYSHDTSHTGQVGTALYAAPELDSHGVKA---MYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEEL  150 (454)
Q Consensus        74 ~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~---~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l  150 (454)
                           .........+||+.|+|||++......   .++.++  ||||+              ||++|||+++.....   
T Consensus       169 -----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~--Dvwsl--------------G~il~el~tg~~~~~---  224 (301)
T 3q4u_A          169 -----QLDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRV--DIWAF--------------GLVLWEVARRMVSNG---  224 (301)
T ss_dssp             -----EEECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHH--HHHHH--------------HHHHHHHHTTBCBTT---
T ss_pred             -----cccccccccccccceeChhhhcCcCCCCcccCCchh--hHHHH--------------HHHHHHHHhhhcCcc---
Confidence                 111123445899999999998722111   556677  99999              999999776521000   


Q ss_pred             HHHhhhcCCCCCCc-----hhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC
Q psy7309         151 KHNIRRENGPSTGS-----NVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS  224 (454)
Q Consensus       151 ~~~i~~~~~p~~~~-----~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt  224 (454)
                        .......|+...     .......... ......+|...        ......+...+++     .+||+.||++|||
T Consensus       225 --~~~~~~~pf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~li-----~~cl~~dP~~Rps  289 (301)
T 3q4u_A          225 --IVEDYKPPFYDVVPNDPSFEDMRKVVCVDQQRPNIPNRW--------FSDPTLTSLAKLM-----KECWYQNPSARLT  289 (301)
T ss_dssp             --BCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGG--------GGSHHHHHHHHHH-----HHHCCSSGGGSCC
T ss_pred             --ccccccccccccCCCCcchhhhhHHHhccCCCCCCChhh--------ccCccHHHHHHHH-----HHHhhcChhhCCC
Confidence              000112222221     1111111111 11222222210        0011224566777     9999999999999


Q ss_pred             hhhhhc
Q psy7309         225 SEQNLC  230 (454)
Q Consensus       225 a~e~l~  230 (454)
                      ++|+++
T Consensus       290 ~~~i~~  295 (301)
T 3q4u_A          290 ALRIKK  295 (301)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998875

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.91  E-value=1.4e-25  Score=219.67  Aligned_cols=155  Identities=21%  Similarity=0.317  Sum_probs=114.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       148 ~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  204 (316)
T 2xir_A          148 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD-----------------------PDY  204 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTC-----------------------TTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEECCCccccccccC-----------------------ccc
Confidence            367899999999999999999999999999999999999999999999854321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++ |..               |
T Consensus       205 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~t~g~~---------------p  250 (316)
T 2xir_A          205 VRKGDARLPLKWMAPETIF---DRVYTIQS--DVWSF--------------GVLLWEIFSLGAS---------------P  250 (316)
T ss_dssp             EEETTEEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             eeccCCCcceeecCchhhc---cccccchh--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1233467899999999997   67788888  99999              999999775 443               2


Q ss_pred             CCCchh-hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNV-QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+... ......+........+..             .++...+++     .+||+.||.+|||+.|+++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          251 YPGVKIDEEFCRRLKEGTRMRAPDY-------------TTPEMYQTM-----LDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             STTCCCSHHHHHHHHHTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CcccchhHHHHHHhccCccCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            222211 111222222222223322             226677788     99999999999999998875

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.91  E-value=3e-25  Score=213.82  Aligned_cols=149  Identities=19%  Similarity=0.266  Sum_probs=109.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                           
T Consensus       117 ~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~---------------------------  169 (278)
T 1byg_A          117 DCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS---------------------------  169 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccccccc---------------------------
Confidence            35789999999999999999999999999999999999999999999875421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                       ......+|+.|+|||++.   +..++.++  ||||+              |+++|++++ +++               |
T Consensus       170 -~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~t~g~~---------------p  214 (278)
T 1byg_A          170 -TQDTGKLPVKWTAPEALR---EKKFSTKS--DVWSF--------------GILLWEIYSFGRV---------------P  214 (278)
T ss_dssp             -------CCTTTSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             -cccCCCccccccCHHHhC---CCCCCchh--cHHHH--------------HHHHHHHHhCCCC---------------C
Confidence             112336788999999987   66788888  99999              999999775 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             .++...++|     ++||+.||.+|||+.|+++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          215 YPRIPLKDVVPRVEKGYKMDAPDG-------------CPPAVYEVM-----KNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             CTTSCGGGHHHHHTTTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHhcCCCCCCccc-------------CCHHHHHHH-----HHHhcCChhhCCCHHHHHH
Confidence            333333444444443333333322             236677888     9999999999999998875

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.90  E-value=2.4e-25  Score=215.80  Aligned_cols=163  Identities=19%  Similarity=0.173  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE---ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl---~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||+|||++||+||||||+|||+   +.++.+||+|||+|+........                  ..
T Consensus       105 ~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~------------------~~  166 (296)
T 4hgt_A          105 KTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH------------------QH  166 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTC------------------CB
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccC------------------cc
Confidence            4688999999999999999999999999999999   78899999999999865321100                  00


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      ..........||+.|+|||++.   +..++.++  ||||+              ||++|++++|+.              
T Consensus       167 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~--------------  213 (296)
T 4hgt_A          167 IPYRENKNLTGTARYASINTHL---GIEQSRRD--DLESL--------------GYVLMYFNLGSL--------------  213 (296)
T ss_dssp             CCCCCSCCCCSCGGGCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             CCCCcccccCCCccccchHHhc---CCCCCchh--HHHHH--------------HHHHHHHhcCCC--------------
Confidence            1122344678999999999998   66788888  99999              999999766543              


Q ss_pred             CCCCCch---hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         159 GPSTGSN---VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       159 ~p~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                       |+.+..   .......+... ....+..       . .....++...+++     .+||+.||++|||++++++
T Consensus       214 -pf~~~~~~~~~~~~~~~~~~-~~~~~~~-------~-~~~~~~~~l~~li-----~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          214 -PWQGLKAATKRQKYERISEK-KMSTPIE-------V-LCKGYPSEFATYL-----NFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             -TTSSCCCSSSSSHHHHHHHH-HHHSCHH-------H-HTTTSCHHHHHHH-----HHHHTSCTTCCCCHHHHHH
T ss_pred             -CCcccchhhhhhhhhhhhcc-cccchhh-------h-hhccCCHHHHHHH-----HHHHhcCCCCCCCHHHHHH
Confidence             221110   00001100000 0000000       0 0011235667888     9999999999999998875

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.90  E-value=2e-25  Score=221.14  Aligned_cols=155  Identities=23%  Similarity=0.300  Sum_probs=115.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       157 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~-----------------------~~~  213 (334)
T 2pvf_A          157 KDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNI-----------------------DYY  213 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECTTT-----------------------SSE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcCCCCEEEcccccccccccc-----------------------ccc
Confidence            357899999999999999999999999999999999999999999999754321                       001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++||+++ |+.               |
T Consensus       214 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~---------------p  259 (334)
T 2pvf_A          214 KKTTNGRLPVKWMAPEALF---DRVYTHQS--DVWSF--------------GVLMWEIFTLGGS---------------P  259 (334)
T ss_dssp             ECCSCCCCCGGGCCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             cccCCCCcccceeChHHhc---CCCcChHH--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1233456789999999987   66788888  99999              999999765 433               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.........+........+..             .++...+++     .+||+.||.+|||++|++++
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          260 YPGIPVEELFKLLKEGHRMDKPAN-------------CTNELYMMM-----RDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             STTCCHHHHHHHHHHTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             cCcCCHHHHHHHHhcCCCCCCCcc-------------CCHHHHHHH-----HHHccCChhhCcCHHHHHHH
Confidence            333333333333333333333322             125667777     99999999999999988863

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.90  E-value=2.4e-25  Score=214.48  Aligned_cols=153  Identities=25%  Similarity=0.359  Sum_probs=114.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||+|||++||+||||||+||+++.++.+||+|||++.....                        ...
T Consensus       109 ~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~------------------------~~~  164 (279)
T 1qpc_A          109 NKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED------------------------NEY  164 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSS------------------------SCE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccC------------------------ccc
Confidence            46789999999999999999999999999999999999999999999975431                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |++++||++ |+.               |
T Consensus       165 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~~g~~---------------p  210 (279)
T 1qpc_A          165 TAREGAKFPIKWTAPEAIN---YGTFTIKS--DVWSF--------------GILLTEIVTHGRI---------------P  210 (279)
T ss_dssp             ECCTTCCCCTTTSCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             ccccCCCCccCccChhhhc---cCCCCchh--hhHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223446788999999987   66788888  99999              999999776 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+..             .++...+++     .+||..||++|||++++++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          211 YPGMTNPEVIQNLERGYRMVRPDN-------------CPEELYQLM-----RLCWKERPEDRPTFDYLRS  262 (279)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CcccCHHHHHHHHhcccCCCCccc-------------ccHHHHHHH-----HHHhccChhhCCCHHHHHH
Confidence            333333333333333322222222             226667788     9999999999999998875

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.90  E-value=1.1e-25  Score=222.60  Aligned_cols=162  Identities=17%  Similarity=0.171  Sum_probs=112.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC-----eEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH-----VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~-----vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.     +||+|||+|+........                  
T Consensus       105 ~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~------------------  166 (330)
T 2izr_A          105 KTVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETK------------------  166 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCC------------------
Confidence            468899999999999999999999999999999998887     999999999864321100                  


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                      ...........+||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.            
T Consensus       167 ~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ell~g~~------------  215 (330)
T 2izr_A          167 KHIPYREHKSLTGTARYMSINTHL---GKEQSRRD--DLEAL--------------GHMFMYFLRGSL------------  215 (330)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC------------
T ss_pred             ccccccccCCcCCCccccChHHHc---CCCCCchh--HHHHH--------------HHHHHHHhcCCC------------
Confidence            001122345678999999999998   67788888  99999              999999776543            


Q ss_pred             cCCCCCC---chhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         157 ENGPSTG---SNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       157 ~~~p~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                         |+.+   .........+..... ..+..       ..  ....+...+++     .+||+.||.+|||++++++
T Consensus       216 ---Pf~~~~~~~~~~~~~~i~~~~~-~~~~~-------~~--~~~~p~~~~li-----~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          216 ---PWQGLKADTLKERYQKIGDTKR-ATPIE-------VL--CENFPEMATYL-----RYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             ---TTTTCCCSSHHHHHHHHHHHHH-HSCHH-------HH--TTTCHHHHHHH-----HHHHHCCTTCCCCHHHHHH
T ss_pred             ---CccccccccHHHHHHHHHhhhc-cCCHH-------HH--hccChHHHHHH-----HHHHhCCCCCCCCHHHHHH
Confidence               2222   111111111111000 00100       00  00113666777     9999999999999988875

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.90  E-value=2.6e-25  Score=215.81  Aligned_cols=155  Identities=19%  Similarity=0.229  Sum_probs=114.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++.......                      ...
T Consensus       117 ~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~----------------------~~~  174 (291)
T 1xbb_A          117 KNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE----------------------NYY  174 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC----------------------SEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCC----------------------Ccc
Confidence            3678999999999999999999999999999999999999999999997542210                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++ |..               |
T Consensus       175 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~g~~---------------p  220 (291)
T 1xbb_A          175 KAQTHGKWPVKWYAPECIN---YYKFSSKS--DVWSF--------------GVLMWEAFSYGQK---------------P  220 (291)
T ss_dssp             EC----CCCGGGCCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             cccccCCCCceeeChHHhc---cCCCChhh--hHHHH--------------HHHHHHHHhcCCC---------------C
Confidence            1223345788999999997   66788888  99999              999999776 543               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........+...             ++...+++     .+||+.||++|||+.++++
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          221 YRGMKGSEVTAMLEKGERMGCPAGC-------------PREMYDLM-----NLCWTYDVENRPGFAAVEL  272 (291)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSTTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            3333333333344333333333332             26677888     9999999999999998875

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.90  E-value=3e-25  Score=229.65  Aligned_cols=153  Identities=23%  Similarity=0.307  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                        ...
T Consensus       280 ~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~------------------------~~~  335 (452)
T 1fmk_A          280 PQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED------------------------NEY  335 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCC------------------------Cce
Confidence            46789999999999999999999999999999999999999999999985532                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|..|+|||++.   ...|+.++  ||||+              |+++||+++ |+.               |
T Consensus       336 ~~~~~~~~~~~y~aPE~~~---~~~~~~~s--Dvwsl--------------G~~l~el~t~g~~---------------P  381 (452)
T 1fmk_A          336 TARQGAKFPIKWTAPEAAL---YGRFTIKS--DVWSF--------------GILLTELTTKGRV---------------P  381 (452)
T ss_dssp             -------CCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             ecccCCcccccccCHhHHh---cCCCCccc--cHHhH--------------HHHHHHHHhCCCC---------------C
Confidence            1223446788999999987   66788888  99999              999999776 443               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........|...             ++...++|     .+||+.||++|||+++++.
T Consensus       382 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~dP~~Rpt~~~l~~  433 (452)
T 1fmk_A          382 YPGMVNREVLDQVERGYRMPCPPEC-------------PESLHDLM-----CQCWRKEPEERPTFEYLQA  433 (452)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHccCChhhCcCHHHHHH
Confidence            4444444444444444333333332             25667788     9999999999999999886

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.90  E-value=3.7e-25  Score=214.72  Aligned_cols=160  Identities=26%  Similarity=0.378  Sum_probs=103.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       120 ~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  176 (289)
T 3og7_A          120 KKLIDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRW-----------------------SGS  176 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceeccccccc-----------------------ccc
Confidence            467899999999999999999999999999999999999999999999754321                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.......++.++  ||||+              |+++|++++++.               |+
T Consensus       177 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~--Di~sl--------------G~il~el~~g~~---------------p~  225 (289)
T 3og7_A          177 HQFEQLSGSILWMAPEVIRMQDSNPYSFQS--DVYAF--------------GIVLYELMTGQL---------------PY  225 (289)
T ss_dssp             -------CCCTTCCHHHHC----CCSCHHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             ccccccCCCccccCchhhcccCCCCCCccc--chHHH--------------HHHHHHHHHCCC---------------Cc
Confidence            233456799999999998643356677788  99999              999999766543               22


Q ss_pred             CCchhhh-hhhhhccCCC-CCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQK-SLQKFQKSPP-SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~-~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ....... ....+..... ..++...          ...++...+++     .+||+.||.+|||++|+++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~li-----~~~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          226 SNINNRDQIIEMVGRGSLSPDLSKVR----------SNCPKRMKRLM-----AECLKKKRDERPSFPRILA  281 (289)
T ss_dssp             SSCCCHHHHHHHHHHTSCCCCTTSSC----------TTSCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             cccchHHHHHHHhcccccCcchhhcc----------ccCCHHHHHHH-----HHHccCChhhCCCHHHHHH
Confidence            2211111 1111111111 1111110          11236667788     9999999999999998875

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.90  E-value=2e-25  Score=219.88  Aligned_cols=170  Identities=21%  Similarity=0.253  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       134 ~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~----------------------~~~  191 (318)
T 3lxp_A          134 AQLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGH----------------------EYY  191 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTC----------------------SEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccccccccc----------------------ccc
Confidence            4688999999999999999999999999999999999999999999998543210                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++++................+.
T Consensus       192 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~ll~g~~p~~~~~~~~~~~~~~~~  252 (318)
T 3lxp_A          192 RVREDGDSPVFWYAPECLK---EYKFYYAS--DVWSF--------------GVTLYELLTHCDSSQSPPTKFLELIGIAQ  252 (318)
T ss_dssp             EC---CCCCGGGCCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHTTTCGGGSHHHHHHHHHCSCC
T ss_pred             ccccCCCCCceeeChHHhc---CCCCCcHH--HHHHH--------------HHHHHHHHhCCCcccccchhhhhhhcccc
Confidence            1233457889999999997   66788888  99999              99999987765422111111101001111


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...........+........+..             .++...++|     ++||+.||++|||++|+++
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          253 GQMTVLRLTELLERGERLPRPDK-------------CPAEVYHLM-----KNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             HHHHHHHHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             cchhHHHHHHHHhcccCCCCCcc-------------ccHHHHHHH-----HHHcCCCcccCcCHHHHHH
Confidence            11111122222332333333332             226677788     9999999999999998874

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.90  E-value=3.2e-25  Score=229.32  Aligned_cols=149  Identities=19%  Similarity=0.268  Sum_probs=114.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                           
T Consensus       289 ~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~---------------------------  341 (450)
T 1k9a_A          289 DCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS---------------------------  341 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccc---------------------------
Confidence            35788999999999999999999999999999999999999999999874311                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                       ......+|+.|+|||++.   +..|+.++  ||||+              |+++||+++ |+.               |
T Consensus       342 -~~~~~~~~~~y~aPE~~~---~~~~~~~s--Dvwsl--------------G~~l~el~t~g~~---------------P  386 (450)
T 1k9a_A          342 -TQDTGKLPVKWTAPEALR---EKKFSTKS--DVWSF--------------GILLWEIYSFGRV---------------P  386 (450)
T ss_dssp             ------CCCTTTSCHHHHH---SSCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             -cccCCCCCcceeCHHHhc---CCCCCcHH--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence             112236688999999997   67788888  99999              999999875 443               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+..+.....|...             ++...++|     .+||+.||++|||+.|++.
T Consensus       387 ~~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          387 YPRIPLKDVVPRVEKGYKMDAPDGC-------------PPAVYDVM-----KNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             STTSCTTTHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCcC-------------CHHHHHHH-----HHHcCCChhHCcCHHHHHH
Confidence            4444444444455444444444432             26677888     9999999999999998875

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=6.2e-25  Score=217.94  Aligned_cols=156  Identities=19%  Similarity=0.221  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||.|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       147 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~----------------------~~~  204 (333)
T 1mqb_A          147 LQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP----------------------EAT  204 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhcccc----------------------ccc
Confidence            4688999999999999999999999999999999999999999999998653210                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   +..++.++  ||||+              |+++||+++ |+.               |
T Consensus       205 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~---------------p  250 (333)
T 1mqb_A          205 YTTSGGKIPIRWTAPEAIS---YRKFTSAS--DVWSF--------------GIVMWEVMTYGER---------------P  250 (333)
T ss_dssp             ------CCCGGGSCHHHHH---SCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             cccCCCCccccccCchhcc---cCCCCchh--hhHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1222345688999999987   66788888  99999              999999765 443               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...........+........+..             .++...+++     .+||+.||++|||+.|++++
T Consensus       251 f~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          251 YWELSNHEVMKAINDGFRLPTPMD-------------CPSAIYQLM-----MQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             TTTCCHHHHHHHHHTTCCCCCCTT-------------CBHHHHHHH-----HHHTCSSTTTSCCHHHHHHH
T ss_pred             cccCCHHHHHHHHHCCCcCCCccc-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHHH
Confidence            333333333333333322222222             125667788     99999999999999988864

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.90  E-value=7.8e-25  Score=234.67  Aligned_cols=180  Identities=24%  Similarity=0.198  Sum_probs=114.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC---eEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH---VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~---vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.   +||+|||++.....                        
T Consensus       121 ~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~------------------------  176 (676)
T 3qa8_A          121 GPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQ------------------------  176 (676)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTS------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEccccccccccc------------------------
Confidence            468899999999999999999999999999999997765   89999999985421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHH--HHHHHhhh
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLE--ELKHNIRR  156 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~--~l~~~i~~  156 (454)
                        ........||+.|+|||++.   +..|+.++  ||||+              |+++|++++|..+...  ....... 
T Consensus       177 --~~~~~~~~gt~~Y~APE~l~---~~~~s~ks--DIwSL--------------GviLyeLltG~~Pf~~~~~~~~~~~-  234 (676)
T 3qa8_A          177 --GELCTEFVGTLQYLAPELLE---QKKYTVTV--DYWSF--------------GTLAFECITGFRPFLPNWQPVQWHG-  234 (676)
T ss_dssp             --CCCCCCCCSCCTTCSSCSSC---CSCCSTTH--HHHHH--------------HHHHHHHHSSCSSCCSSCHHHHSST-
T ss_pred             --ccccccccCCcccCChHHhc---cCCCCchh--HHHHH--------------HHHHHHHHHCCCCCCcccchhhhhh-
Confidence              22334568999999999997   67888888  99999              9999997776432100  0000000 


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                         .............-.......++...   ++........++.+.++|     ++||..||++|||++|+++||||..
T Consensus       235 ---~i~~~~~~~~~~~~~l~g~~~~~~~l---p~p~~l~~~ls~~L~dLI-----~~mL~~DP~kRPTa~elL~hp~F~~  303 (676)
T 3qa8_A          235 ---KVREKSNEHIVVYDDLTGAVKFSSVL---PTPNHLSGILAGKLERWL-----QCMLMWHQRQRGTDPQNPNVGCFQA  303 (676)
T ss_dssp             ---TCC------CCSCCCCSSSCCCCSSS---CCSCCCCGGGHHHHHHHH-----HHHSCSSCC---CCTTCCCCTTHHH
T ss_pred             ---hhhcccchhhhhhhhhcccccccccc---CCchhhchhhhHHHHHHH-----HHHccCCHhhCcCHHHHhcCHHHHH
Confidence               00000000000000000111111110   000001112235566677     9999999999999999999999986


Q ss_pred             CC
Q psy7309         237 GS  238 (454)
Q Consensus       237 ~~  238 (454)
                      ..
T Consensus       304 l~  305 (676)
T 3qa8_A          304 LD  305 (676)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.90  E-value=5.9e-25  Score=236.65  Aligned_cols=155  Identities=19%  Similarity=0.229  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.+....                      ...
T Consensus       469 ~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~----------------------~~~  526 (635)
T 4fl3_A          469 KNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE----------------------NYY  526 (635)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCc----------------------ccc
Confidence            3678999999999999999999999999999999999999999999998653210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+...||+.|+|||++.   +..|+.++  ||||+              ||++|||++ |+.               |
T Consensus       527 ~~~~~~~~t~~y~APE~~~---~~~~~~~s--DvwSl--------------Gv~l~ellt~G~~---------------P  572 (635)
T 4fl3_A          527 KAQTHGKWPVKWYAPECIN---YYKFSSKS--DVWSF--------------GVLMWEAFSYGQK---------------P  572 (635)
T ss_dssp             --------CGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             ccccCCCCceeeeChhhhc---CCCCCcHH--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            2234456789999999997   67788888  99999              999999775 543               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+........|...             ++.+.++|     .+||+.||++|||++++++
T Consensus       573 f~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~dP~~RPs~~~l~~  624 (635)
T 4fl3_A          573 YRGMKGSEVTAMLEKGERMGCPAGC-------------PREMYDLM-----NLCWTYDVENRPGFAAVEL  624 (635)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSTTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHcCCCHhHCcCHHHHHH
Confidence            4455555555555545444444442             26677788     9999999999999998874

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.90  E-value=3.5e-25  Score=231.79  Aligned_cols=152  Identities=21%  Similarity=0.270  Sum_probs=116.1

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++....                        ....
T Consensus       319 ~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~------------------------~~~~  374 (495)
T 1opk_A          319 VLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTG------------------------DTYT  374 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTT------------------------CCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccC------------------------Ccee
Confidence            5788999999999999999999999999999999999999999999985421                        1111


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+|..|+|||++.   ...|+.++  ||||+              ||++|||++ |..               |+
T Consensus       375 ~~~~~~~~~~y~aPE~~~---~~~~~~~s--DvwSl--------------G~~l~el~t~g~~---------------p~  420 (495)
T 1opk_A          375 AHAGAKFPIKWTAPESLA---YNKFSIKS--DVWAF--------------GVLLWEIATYGMS---------------PY  420 (495)
T ss_dssp             CCTTCCCCGGGCCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTSCC---------------SS
T ss_pred             ecCCCcCCcceeCHhHHh---cCCCCcHH--hHHhH--------------HHHHHHHHhCCCC---------------CC
Confidence            223445688999999997   67788888  99999              999999776 432               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.........+........|...             ++.+.++|     .+||+.||++|||+.++++
T Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~dP~~RPs~~el~~  471 (495)
T 1opk_A          421 PGIDLSQVYELLEKDYRMERPEGC-------------PEKVYELM-----RACWQWNPSDRPSFAEIHQ  471 (495)
T ss_dssp             TTCCGGGHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHcCcChhHCcCHHHHHH
Confidence            444444444444433333333332             26667788     9999999999999998875

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.90  E-value=4.1e-25  Score=216.00  Aligned_cols=154  Identities=24%  Similarity=0.324  Sum_probs=111.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       145 ~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  201 (313)
T 1t46_A          145 EDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKND-----------------------SNY  201 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSC-----------------------TTS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcCCCCEEEcccccccccccc-----------------------ccc
Confidence            467899999999999999999999999999999999999999999999854321                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|+|++ +..               |
T Consensus       202 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ellt~g~~---------------p  247 (313)
T 1t46_A          202 VVKGNARLPVKWMAPESIF---NCVYTFES--DVWSY--------------GIFLWELFSLGSS---------------P  247 (313)
T ss_dssp             EECSSSEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             eeccCCCCcceeeChHHhc---CCCCChHH--HHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1233456889999999987   66788888  99999              999999775 443               2


Q ss_pred             CCCchhhhhh-hhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSL-QKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+....... ..+........+..             .++...+++     .+||+.||.+|||++|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~ell~  300 (313)
T 1t46_A          248 YPGMPVDSKFYKMIKEGFRMLSPEH-------------APAEMYDIM-----KTCWDADPLKRPTFKQIVQ  300 (313)
T ss_dssp             STTCCSSHHHHHHHHHTCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCcccchhHHHHHhccCCCCCCccc-------------CCHHHHHHH-----HHHcCCCchhCcCHHHHHH
Confidence            2222111111 11111111111221             225667788     9999999999999998886

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.90  E-value=4.3e-25  Score=213.55  Aligned_cols=149  Identities=19%  Similarity=0.257  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC--------eEEecccchhhhhhhcCCCccccccCccCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH--------VKIGDFGLATNILQKHAGPLARELTGYILPPID   73 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~--------vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~   73 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.        +||+|||++....                    
T Consensus       113 ~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~--------------------  172 (289)
T 4fvq_A          113 LWKLEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVL--------------------  172 (289)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTS--------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCccccccc--------------------
Confidence            357899999999999999999999999999999998887        9999999986432                    


Q ss_pred             CCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHH
Q psy7309          74 STAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHN  153 (454)
Q Consensus        74 ~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~  153 (454)
                               ......||+.|+|||++..  ...++.++  ||||+              |+++|||+++..         
T Consensus       173 ---------~~~~~~~~~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~il~el~~g~~---------  216 (289)
T 4fvq_A          173 ---------PKDILQERIPWVPPECIEN--PKNLNLAT--DKWSF--------------GTTLWEICSGGD---------  216 (289)
T ss_dssp             ---------CHHHHHHTTTTSCHHHHHC--GGGCCHHH--HHHHH--------------HHHHHHHHTTTC---------
T ss_pred             ---------CccccCCcCcccCHHHhCC--CCCCCchh--HHHHH--------------HHHHHHHHcCCC---------
Confidence                     1123468899999999871  26688888  99999              999999876432         


Q ss_pred             hhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         154 IRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       154 i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                           .|+..............  ...++..             .++...+++     ++||+.||++|||++|+++|
T Consensus       217 -----~~~~~~~~~~~~~~~~~--~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          217 -----KPLSALDSQRKLQFYED--RHQLPAP-------------KAAELANLI-----NNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             -----CTTTTSCHHHHHHHHHT--TCCCCCC-------------SSCTTHHHH-----HHHSCSSGGGSCCHHHHHHH
T ss_pred             -----CCccccchHHHHHHhhc--cCCCCCC-------------CCHHHHHHH-----HHHcCCChhHCcCHHHHHHH
Confidence                 12222222222222221  1222222             125677888     99999999999999999874

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.7e-25  Score=218.24  Aligned_cols=167  Identities=19%  Similarity=0.205  Sum_probs=97.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..++.++.||+.||+|||++|  |+||||||+|||++.++.+||+|||+++..........            . .....
T Consensus       136 ~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~------------~-~~~~~  202 (337)
T 3ll6_A          136 DTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSW------------S-AQRRA  202 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccc------------c-ccccc
Confidence            468899999999999999999  99999999999999999999999999985432100000            0 00000


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .........||+.|+|||++....+..++.++  ||||+              |+++|+|++++.+..            
T Consensus       203 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~--Dv~sl--------------G~il~el~~g~~p~~------------  254 (337)
T 3ll6_A          203 LVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQ--DIWAL--------------GCILYLLCFRQHPFE------------  254 (337)
T ss_dssp             ---------------------CCTTSCSSHHH--HHHHH--------------HHHHHHHHHSSCCC-------------
T ss_pred             cchhhccccCCCCcCChhhhhccccCCCChHH--hHHHH--------------HHHHHHHHhCCCCCc------------
Confidence            11122356799999999998432356778888  99999              999999776554221            


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                         ........     ......+..           ........++|     ++||+.||.+|||++|+++|-+
T Consensus       255 ---~~~~~~~~-----~~~~~~~~~-----------~~~~~~~~~li-----~~~l~~~p~~Rps~~e~l~~l~  304 (337)
T 3ll6_A          255 ---DGAKLRIV-----NGKYSIPPH-----------DTQYTVFHSLI-----RAMLQVNPEERLSIAEVVHQLQ  304 (337)
T ss_dssp             -------------------CCCCTT-----------CCSSGGGHHHH-----HHHSCSSGGGSCCHHHHHHHHH
T ss_pred             ---chhHHHhh-----cCcccCCcc-----------cccchHHHHHH-----HHHccCChhhCcCHHHHHHHHH
Confidence               11111000     001111111           11225567788     9999999999999999998754

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.90  E-value=3.1e-25  Score=218.94  Aligned_cols=104  Identities=25%  Similarity=0.359  Sum_probs=84.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHc----------CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ----------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPP   71 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~----------giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~   71 (454)
                      ..++.++.|++.||+|||++          ||+||||||+|||++.++.+||+|||+|+.....                
T Consensus       121 ~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~----------------  184 (322)
T 3soc_A          121 NELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAG----------------  184 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccc----------------
Confidence            46889999999999999999          9999999999999999999999999999755321                


Q ss_pred             CCCCCcccCCCCCcCcccccceeccccccccc--cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          72 IDSTAFYSHDTSHTGQVGTALYAAPELDSHGV--KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        72 ~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~--~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                             .........+||+.|+|||++....  ...++.++  ||||+              ||++|||++|+.
T Consensus       185 -------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~--Diwsl--------------G~il~el~tg~~  236 (322)
T 3soc_A          185 -------KSAGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRI--DMYAM--------------GLVLWELASRCT  236 (322)
T ss_dssp             -------SCCCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHH--HHHHH--------------HHHHHHHHTTBT
T ss_pred             -------cCccccccCccCccccCHhhcccccccCcCCCccc--hhHHH--------------HHHHHHHHhCCC
Confidence                   1122334568999999999987211  14667777  99999              999999877654

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.90  E-value=4.7e-25  Score=222.55  Aligned_cols=155  Identities=21%  Similarity=0.236  Sum_probs=103.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++......                      ...
T Consensus       147 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~----------------------~~~  204 (373)
T 2qol_A          147 IQLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDP----------------------EAA  204 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCC----------------------ccc
Confidence            3678999999999999999999999999999999999999999999998653210                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   +..|+.++  ||||+              |+++||+++ |+.               |
T Consensus       205 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~Sl--------------G~il~ellt~g~~---------------P  250 (373)
T 2qol_A          205 YTTRGGKIPIRWTSPEAIA---YRKFTSAS--DVWSY--------------GIVLWEVMSYGER---------------P  250 (373)
T ss_dssp             ---------CTTSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTC-C---------------T
T ss_pred             eeccCCCcCCCccChhhhc---cCCcCchh--cHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1122335678899999997   67788888  99999              999999654 433               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+........+..             ......+++     .+||+.||++|||++|+++
T Consensus       251 ~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          251 YWEMSNQDVIKAVDEGYRLPPPMD-------------CPAALYQLM-----LDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             TTTCCHHHHHHHHHTTEECCCCTT-------------CBHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCcc-------------ccHHHHHHH-----HHHhCcChhhCcCHHHHHH
Confidence            333333333333332222222221             125566777     9999999999999998875

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.90  E-value=7e-25  Score=216.61  Aligned_cols=172  Identities=22%  Similarity=0.288  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHc--------CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ--------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID   73 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~--------giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~   73 (454)
                      ..++.++.|++.||+|||++        ||+||||||+|||++.++.+||+|||+|........                
T Consensus       134 ~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~----------------  197 (337)
T 3mdy_A          134 KSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTN----------------  197 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC--------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccc----------------
Confidence            46789999999999999998        999999999999999999999999999975432100                


Q ss_pred             CCCcccCCCCCcCcccccceecccccccccccccccc------CCccccchhhhHHHHHHHHHhcceeeeeecCCchhhH
Q psy7309          74 STAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQF------TPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTL  147 (454)
Q Consensus        74 ~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~------~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~  147 (454)
                           .........+||+.|+|||++.   +..++..      +  ||||+              ||++|||+++.....
T Consensus       198 -----~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~~~~~~~--Diwsl--------------G~il~el~tg~~~~~  253 (337)
T 3mdy_A          198 -----EVDIPPNTRVGTKRYMPPEVLD---ESLNRNHFQSYIMA--DMYSF--------------GLILWEVARRCVSGG  253 (337)
T ss_dssp             ----------CCSSCSCGGGCCHHHHT---TCCCTTCTHHHHHH--HHHHH--------------HHHHHHHHTTBCBTT
T ss_pred             -----cccCCCCCCccCcceeChhhcc---cccCCccccCcccc--chHHH--------------HHHHHHHHhccCccc
Confidence                 1111233568999999999987   3334433      6  99999              999999776532100


Q ss_pred             HHHHHHhhhcCCCCCCc-----hhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCC
Q psy7309         148 EELKHNIRRENGPSTGS-----NVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSK  221 (454)
Q Consensus       148 ~~l~~~i~~~~~p~~~~-----~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~  221 (454)
                           .......|+...     .......... ......++....        .....+...+++     .+||+.||++
T Consensus       254 -----~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~li-----~~~l~~dP~~  315 (337)
T 3mdy_A          254 -----IVEEYQLPYHDLVPSDPSYEDMREIVCIKKLRPSFPNRWS--------SDECLRQMGKLM-----TECWAHNPAS  315 (337)
T ss_dssp             -----BCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGGGG--------GSHHHHHHHHHH-----HHHSCSSGGG
T ss_pred             -----ccccccccHhhhcCCCCchhhhHHHHhhhccCccccccch--------hhHHHHHHHHHH-----HHhhhhChhh
Confidence                 000011122111     1111111111 111222222210        011224456677     9999999999


Q ss_pred             CCChhhhhcC
Q psy7309         222 RPSSEQNLCQ  231 (454)
Q Consensus       222 Rpta~e~l~h  231 (454)
                      |||+.|+++|
T Consensus       316 Rps~~ell~~  325 (337)
T 3mdy_A          316 RLTALRVKKT  325 (337)
T ss_dssp             SCCHHHHHHH
T ss_pred             CCCHHHHHHH
Confidence            9999998874

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.90  E-value=1.8e-25  Score=224.50  Aligned_cols=106  Identities=18%  Similarity=0.223  Sum_probs=85.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc--cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID--YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~--~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++  .++.+||+|||+|+.+.......                  ..
T Consensus       152 ~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nill~~~~~~~~kl~DFG~a~~~~~~~~~~------------------~~  213 (364)
T 3op5_A          152 KTVLQLSLRILDILEYIHEHEYVHGDIKASNLLLNYKNPDQVYLVDYGLAYRYCPEGVHK------------------AY  213 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEESSCTTCEEECCCTTCEESSGGGCCC------------------CS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEEEecCCCCeEEEEECCcceecccCCccc------------------cc
Confidence            46889999999999999999999999999999999  88999999999998653211100                  01


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      ........+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.
T Consensus       214 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~g~~  259 (364)
T 3op5_A          214 AADPKRCHDGTIEFTSIDAHN---GVAPSRRG--DLEIL--------------GYCMIQWLTGHL  259 (364)
T ss_dssp             SCCSSCCCCCCTTTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSCC
T ss_pred             ccCcccccCCCCCccCHHHhC---CCCCCchh--hHHHH--------------HHHHHHHHhCCC
Confidence            122334567999999999998   66788888  99999              999999776654

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.90  E-value=2.3e-25  Score=219.55  Aligned_cols=173  Identities=22%  Similarity=0.243  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHc---CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ---GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~---giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.|++.||+|||++   ||+||||||+|||++.++.+||+|||++.....                        
T Consensus       131 ~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~------------------------  186 (326)
T 3uim_A          131 PKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDY------------------------  186 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCS------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCc------------------------
Confidence            36789999999999999999   999999999999999999999999999975421                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh-HHHHHHHhhhc
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT-LEELKHNIRRE  157 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~-~~~l~~~i~~~  157 (454)
                      ..........||+.|+|||++.   +..++.++  ||||+              |+++|+|++|+.+. ....    .  
T Consensus       187 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~pf~~~~~----~--  241 (326)
T 3uim_A          187 KDTHVTTAVRGTIGHIAPEYLS---TGKSSEKT--DVFGY--------------GVMLLELITGQRAFDLARL----A--  241 (326)
T ss_dssp             SSSCEECCCCSCGGGCCHHHHH---HSEECHHH--HHHHH--------------HHHHHHHHHCCCSBCHHHH----T--
T ss_pred             ccccccccccCCcCccCHHHhc---cCCCCccc--cchhH--------------HHHHHHHHhCCCccccccc----c--
Confidence            1122234456999999999997   66788888  99999              99999977655422 1111    0  


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                        ....................  ..... ..............+.+++     .+||+.||.+|||++|+++|-.
T Consensus       242 --~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~li-----~~cl~~dP~~Rps~~ell~~L~  307 (326)
T 3uim_A          242 --NDDDVMLLDWVKGLLKEKKL--EALVD-VDLQGNYKDEEVEQLIQVA-----LLCTQSSPMERPKMSEVVRMLE  307 (326)
T ss_dssp             --TTSCSBHHHHHTTTTSSCCS--TTSSC-TTCTTSCCHHHHHHHHHHH-----HHHTCSCGGGSCCHHHHHHHHH
T ss_pred             --cccchhHHHHHHHHhhchhh--hhhcC-hhhccccCHHHHHHHHHHH-----HHHhCcCCccCCCHHHHHHHhc
Confidence              00001111111111111100  00000 0000000011124455555     9999999999999999998754

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.90  E-value=1.4e-24  Score=209.95  Aligned_cols=151  Identities=25%  Similarity=0.352  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEccCCC-----eEEecccchhhhhhhcCCCccccccCccCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDH-----VKIGDFGLATNILQKHAGPLARELTGYILPPIDS   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~~~~-----vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~   74 (454)
                      ..++.++.|++.||+|||++|  |+||||||+|||++.++.     +||+|||+++...                     
T Consensus       122 ~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~---------------------  180 (287)
T 4f0f_A          122 SVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSV---------------------  180 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCS---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCcccccc---------------------
Confidence            467899999999999999999  999999999999988776     9999999987321                     


Q ss_pred             CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHh
Q psy7309          75 TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNI  154 (454)
Q Consensus        75 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i  154 (454)
                             .......||+.|+|||++.. ....++.++  ||||+              ||++|+|++|+.          
T Consensus       181 -------~~~~~~~g~~~y~aPE~~~~-~~~~~~~~~--Di~sl--------------G~~l~~l~~g~~----------  226 (287)
T 4f0f_A          181 -------HSVSGLLGNFQWMAPETIGA-EEESYTEKA--DTYSF--------------AMILYTILTGEG----------  226 (287)
T ss_dssp             -------SCEECCCCCCTTSCGGGSSC-SSCEECHHH--HHHHH--------------HHHHHHHHHSSC----------
T ss_pred             -------ccccccCCCccccCchhhcc-CCCCcCchh--hHHHH--------------HHHHHHHHcCCC----------
Confidence                   12344689999999999842 145677788  99999              999999776553          


Q ss_pred             hhcCCCCCCchhhh--hhhh-hccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         155 RRENGPSTGSNVQK--SLQK-FQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       155 ~~~~~p~~~~~~~~--~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                           |+.......  .... ........++..             .++...++|     .+||+.||.+|||++|+++
T Consensus       227 -----pf~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          227 -----PFDEYSYGKIKFINMIREEGLRPTIPED-------------CPPRLRNVI-----ELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             -----TTTTCCCCHHHHHHHHHHSCCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCccccccHHHHHHHHhccCCCCCCCcc-------------cCHHHHHHH-----HHHhcCChhhCcCHHHHHH
Confidence                 222111110  0111 111222223332             236677888     9999999999999998875

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.90  E-value=5.3e-25  Score=216.84  Aligned_cols=101  Identities=29%  Similarity=0.361  Sum_probs=84.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       139 ~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  195 (321)
T 2qkw_B          139 EQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTEL-----------------------DQT  195 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSS-----------------------SCC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccccccc-----------------------ccc
Confidence            467899999999999999999999999999999999999999999998753210                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|||++|+.
T Consensus       196 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ell~g~~  239 (321)
T 2qkw_B          196 HLSTVVKGTLGYIDPEYFI---KGRLTEKS--DVYSF--------------GVVLFEVLCARS  239 (321)
T ss_dssp             CCBCCCEEETTTCCHHHHH---HCBCCTHH--HHHHH--------------HHHHHHHHHCCT
T ss_pred             ccccccCCCccccCHHHhc---CCCCCccc--chHhH--------------HHHHHHHHhCCC
Confidence            2234567999999999987   66788888  99999              999999776653

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.90  E-value=2.3e-25  Score=218.21  Aligned_cols=168  Identities=23%  Similarity=0.295  Sum_probs=108.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||+|||++||+||||||+|||++.++.+||+|||++............          .. .......
T Consensus       108 ~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~----------~~-~~~~~~~  176 (310)
T 3s95_A          108 SQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEG----------LR-SLKKPDR  176 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccc----------cc-ccccccc
Confidence            467899999999999999999999999999999999999999999999855321110000          00 0000112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..++.++  ||||+              |+++||++++........         +.
T Consensus       177 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~el~~g~~~~~~~~---------~~  228 (310)
T 3s95_A          177 KKRYTVVGNPYWMAPEMIN---GRSYDEKV--DVFSF--------------GIVLCEIIGRVNADPDYL---------PR  228 (310)
T ss_dssp             ---CCCCSCGGGCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHTCCSSTTTS---------CB
T ss_pred             ccccccCCCcceeCHHHhc---CCCCCcHH--HHHHH--------------HHHHHHHhcCCCCCcchh---------hh
Confidence            2334578999999999998   67788888  99999              999999766443110000         00


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .............    ...+             ...++...+++     .+||+.||++|||++|+++
T Consensus       229 ~~~~~~~~~~~~~----~~~~-------------~~~~~~l~~li-----~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          229 TMDFGLNVRGFLD----RYCP-------------PNCPPSFFPIT-----VRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             CTTSSBCHHHHHH----HTCC-------------TTCCTTHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHhhhhhcccc----ccCC-------------CCCCHHHHHHH-----HHHccCChhhCcCHHHHHH
Confidence            0000000000000    0011             11235667888     9999999999999998876

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.90  E-value=5e-25  Score=217.80  Aligned_cols=154  Identities=22%  Similarity=0.346  Sum_probs=111.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++......                       ...
T Consensus       164 ~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  220 (333)
T 2i1m_A          164 RDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMND-----------------------SNY  220 (333)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGC-----------------------TTS
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCeEEECccccccccccc-----------------------cce
Confidence            357889999999999999999999999999999999999999999999855321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|||++ |.+               |
T Consensus       221 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~t~g~~---------------p  266 (333)
T 2i1m_A          221 IVKGNARLPVKWMAPESIF---DCVYTVQS--DVWSY--------------GILLWEIFSLGLN---------------P  266 (333)
T ss_dssp             EECSSCEECGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHTTTSCC---------------S
T ss_pred             eecCCCCCCccccCHHHhc---cCCCChHH--HHHHH--------------HHHHHHHHcCCCC---------------C
Confidence            1233457789999999987   66788888  99999              999999876 443               2


Q ss_pred             CCCchhhhhhhh-hccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQK-FQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+......... .........+..             .++...+++     .+||+.||.+|||++|+++
T Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~l~~  319 (333)
T 2i1m_A          267 YPGILVNSKFYKLVKDGYQMAQPAF-------------APKNIYSIM-----QACWALEPTHRPTFQQICS  319 (333)
T ss_dssp             STTCCSSHHHHHHHHHTCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CcccchhHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHhccChhhCcCHHHHHH
Confidence            222211111111 111112222222             125566777     9999999999999998876

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.90  E-value=9.4e-25  Score=209.19  Aligned_cols=151  Identities=28%  Similarity=0.330  Sum_probs=106.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC---CcccCCCCCcEEEcc--------CCCeEEecccchhhhhhhcCCCccccccCccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG---IIHRDLKPVNIFIDY--------EDHVKIGDFGLATNILQKHAGPLARELTGYILP   70 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g---iiHrDLKp~NILl~~--------~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~   70 (454)
                      ..++.++.|++.||.|||++|   |+||||||+|||++.        ++.+||+|||++.....                
T Consensus       105 ~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~----------------  168 (271)
T 3dtc_A          105 DILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHR----------------  168 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCccccccc----------------
Confidence            468899999999999999999   999999999999986        67899999999985432                


Q ss_pred             CCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHH
Q psy7309          71 PIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEEL  150 (454)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l  150 (454)
                                 .......||+.|+|||++.   +..++.++  ||||+              |++++++++++.      
T Consensus       169 -----------~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~~l~~l~~g~~------  212 (271)
T 3dtc_A          169 -----------TTKMSAAGAYAWMAPEVIR---ASMFSKGS--DVWSY--------------GVLLWELLTGEV------  212 (271)
T ss_dssp             ------------------CCGGGSCHHHHH---HCCCSHHH--HHHHH--------------HHHHHHHHHCCC------
T ss_pred             -----------ccccCCCCccceeCHHHhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCC------
Confidence                       1122457899999999987   66788888  99999              999999766543      


Q ss_pred             HHHhhhcCCCCCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         151 KHNIRRENGPSTGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       151 ~~~i~~~~~p~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                               |+.+........... .......+..             .++...+++     .+||+.||.+|||++|++
T Consensus       213 ---------p~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~e~l  265 (271)
T 3dtc_A          213 ---------PFRGIDGLAVAYGVAMNKLALPIPST-------------CPEPFAKLM-----EDCWNPDPHSRPSFTNIL  265 (271)
T ss_dssp             ---------TTTTSCHHHHHHHHHTSCCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHH
T ss_pred             ---------CCCCCCHHHHHHhhhcCCCCCCCCcc-------------cCHHHHHHH-----HHHhcCCcccCcCHHHHH
Confidence                     232222222222221 1112222222             226667788     999999999999999988


Q ss_pred             cC
Q psy7309         230 CQ  231 (454)
Q Consensus       230 ~h  231 (454)
                      +|
T Consensus       266 ~~  267 (271)
T 3dtc_A          266 DQ  267 (271)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.90  E-value=6.8e-25  Score=216.97  Aligned_cols=109  Identities=25%  Similarity=0.387  Sum_probs=82.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHc---------CCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQ---------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPI   72 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~---------giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~   72 (454)
                      ..+++++.||+.||+|||++         ||+||||||+|||++.++.+||+|||+|+.........             
T Consensus       111 ~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~-------------  177 (336)
T 3g2f_A          111 VSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVR-------------  177 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC--------------
T ss_pred             hHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccC-------------
Confidence            35789999999999999999         99999999999999999999999999998553210000             


Q ss_pred             CCCCcccCCCCCcCcccccceeccccccccc----cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCc
Q psy7309          73 DSTAFYSHDTSHTGQVGTALYAAPELDSHGV----KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDR  143 (454)
Q Consensus        73 ~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~----~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~  143 (454)
                          ...........+||+.|+|||++....    ...++.++  ||||+              ||++|||+++.
T Consensus       178 ----~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~--Diwsl--------------G~il~ell~g~  232 (336)
T 3g2f_A          178 ----PGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQV--DMYAL--------------GLIYWEIFMRC  232 (336)
T ss_dssp             ------------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHH--HHHHH--------------HHHHHHHHTTB
T ss_pred             ----ccccccccccCCCccceeCchhhcCCccccccccccccc--chHHH--------------HHHHHHHHhcC
Confidence                001122334568999999999987210    14667778  99999              99999977654

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.90  E-value=7.3e-25  Score=217.33  Aligned_cols=148  Identities=14%  Similarity=0.045  Sum_probs=105.4

Q ss_pred             hhHHHHHHHHHHHHHHHH-HcCCcccCCCCCcEEEccCC--------------------CeEEecccchhhhhhhcCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIH-SQGIIHRDLKPVNIFIDYED--------------------HVKIGDFGLATNILQKHAGPL   60 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH-~~giiHrDLKp~NILl~~~~--------------------~vKL~DFGla~~~~~~~~~~~   60 (454)
                      ..++.+++||+.||+||| ++||+||||||+|||++.++                    .+||+|||+|+....      
T Consensus       161 ~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~------  234 (336)
T 2vuw_A          161 ATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERD------  234 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEET------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCC------
Confidence            468999999999999999 99999999999999999887                    899999999985421      


Q ss_pred             cccccCccCCCCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhccee-eeee
Q psy7309          61 ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYL-KAEV  139 (454)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~i-l~el  139 (454)
                                              ...+||+.|+|||++.   +.. +.++  ||||+              |++ .+++
T Consensus       235 ------------------------~~~~gt~~y~aPE~~~---g~~-~~~~--Diwsl--------------~~~~~~~~  270 (336)
T 2vuw_A          235 ------------------------GIVVFCDVSMDEDLFT---GDG-DYQF--DIYRL--------------MKKENNNR  270 (336)
T ss_dssp             ------------------------TEEECCCCTTCSGGGC---CCS-SHHH--HHHHH--------------HHHHHTTC
T ss_pred             ------------------------CcEEEeecccChhhhc---CCC-ccce--ehhhh--------------hCCCCccc
Confidence                                    1348999999999997   333 6677  99998              666 5557


Q ss_pred             cCCchhhHHH-----HHHHhhhcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhh
Q psy7309         140 YKDRPKTLEE-----LKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWC  214 (454)
Q Consensus       140 ~~~~~~~~~~-----l~~~i~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  214 (454)
                      +++..+....     +...+.               .... ......+..     |     ...++++.+||     ++|
T Consensus       271 ~~g~~p~~~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~-----~-----~~~s~~~~dli-----~~~  319 (336)
T 2vuw_A          271 WGEYHPYSNVLWLHYLTDKML---------------KQMT-FKTKCNTPA-----M-----KQIKRKIQEFH-----RTM  319 (336)
T ss_dssp             TTSCCTHHHHHHHHHHHHHHH---------------HTCC-CSSCCCSHH-----H-----HHHHHHHHHHH-----HHG
T ss_pred             ccccCCCcchhhhhHHHHhhh---------------hhhc-cCcccchhh-----h-----hhcCHHHHHHH-----HHH
Confidence            7665533221     111111               0000 000000100     1     11236677888     999


Q ss_pred             cCCCCCCCCChhhhh-cCcccc
Q psy7309         215 LNHDPSKRPSSEQNL-CQPISL  235 (454)
Q Consensus       215 L~~dP~~Rpta~e~l-~hp~f~  235 (454)
                      |++|     ||+|+| +||||+
T Consensus       320 L~~d-----sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          320 LNFS-----SATDLLCQHSLFK  336 (336)
T ss_dssp             GGSS-----SHHHHHHHCGGGC
T ss_pred             hccC-----CHHHHHhcCCCcC
Confidence            9987     999999 999995

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.90  E-value=1.2e-24  Score=233.53  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=117.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+......                      ...
T Consensus       436 ~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~----------------------~~~  493 (613)
T 2ozo_A          436 SNVAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADD----------------------SYY  493 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCC----------------------cee
Confidence            4688999999999999999999999999999999999999999999998543210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|+.|+|||++.   +..|+.++  ||||+              ||++|||++ |+.               |
T Consensus       494 ~~~~~~~~~~~y~APE~~~---~~~~~~~s--DvwSl--------------Gv~l~ellt~G~~---------------P  539 (613)
T 2ozo_A          494 TARSAGKWPLKWYAPECIN---FRKFSSRS--DVWSY--------------GVTMWEALSYGQK---------------P  539 (613)
T ss_dssp             --------CCTTSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eeccCCCCccceeCHhhhc---CCCCCcHH--HHHHH--------------HHHHHHHHHCCCC---------------C
Confidence            1223345678999999997   67888888  99999              999999775 543               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh---cCcccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL---CQPISL  235 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l---~hp~f~  235 (454)
                      +.+.........+........|...             ++...++|     .+||+.||++|||+++++   ++.|+.
T Consensus       540 f~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~dP~~RPs~~~l~~~L~~~~~~  599 (613)
T 2ozo_A          540 YKKMKGPEVMAFIEQGKRMECPPEC-------------PPELYALM-----SDCWIYKWEDRPDFLTVEQRMRACYYS  599 (613)
T ss_dssp             TTTCCSHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHTTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCcC-------------CHHHHHHH-----HHHcCCChhHCcCHHHHHHHHHHHHHH
Confidence            4444444555555545444444432             26677888     999999999999999875   444444

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.90  E-value=4.6e-25  Score=219.81  Aligned_cols=169  Identities=14%  Similarity=0.188  Sum_probs=112.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC--CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~--~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++  .+||+|||+|+.+.......                  ..
T Consensus       151 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~------------------~~  212 (345)
T 2v62_A          151 STVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHK------------------QY  212 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCC------------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccc------------------cc
Confidence            46899999999999999999999999999999999887  99999999998653211000                  01


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .........||+.|+|||++.   +..++.++  ||||+              ||++|||++|+.+.....         
T Consensus       213 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~ell~g~~pf~~~~---------  264 (345)
T 2v62_A          213 QENPRKGHNGTIEFTSLDAHK---GVALSRRS--DVEIL--------------GYCMLRWLCGKLPWEQNL---------  264 (345)
T ss_dssp             CCCGGGCSCSCTTTCCHHHHH---TCCCCHHH--HHHHH--------------HHHHHHHHHSSCTTGGGT---------
T ss_pred             hhccccccCCCccccCHHHhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCCCccccc---------
Confidence            112235568999999999988   56788888  99999              999999776554221000         


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                       ............+.    ..++....  .|  ......++...++|     .+||+.||++|||++++++
T Consensus       265 -~~~~~~~~~~~~~~----~~~~~~~~--~~--~~~~~~~~~l~~li-----~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          265 -KDPVAVQTAKTNLL----DELPQSVL--KW--APSGSSCCEIAQFL-----VCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             -TCHHHHHHHHHHHH----HTTTHHHH--HH--SCTTSCCHHHHHHH-----HHHHTCCTTCCCCHHHHHH
T ss_pred             -cccHHHHHHHHhhc----ccccHHHH--hh--ccccccHHHHHHHH-----HHHhhcCcccCCCHHHHHH
Confidence             00000000000110    01111100  00  00012236677888     9999999999999999986

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.89  E-value=3.2e-24  Score=210.35  Aligned_cols=155  Identities=23%  Similarity=0.285  Sum_probs=101.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.|++.||.|||++||+||||||+|||++.++.+||+|||++.....                        ...
T Consensus       134 ~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~------------------------~~~  189 (309)
T 2h34_A          134 PRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTD------------------------EKL  189 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCccccc------------------------ccc
Confidence            46889999999999999999999999999999999999999999999975432                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++++.               |+
T Consensus       190 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~g~~---------------pf  235 (309)
T 2h34_A          190 TQLGNTVGTLYYMAPERFS---ESHATYRA--DIYAL--------------TCVLYECLTGSP---------------PY  235 (309)
T ss_dssp             -------CCGGGCCGGGTC---C----CCC--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             ccccccCCCcCccCHHHHc---CCCCCchH--hHHHH--------------HHHHHHHHHCCC---------------CC
Confidence            2234567999999999998   67788888  99999              999999776543               22


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-Chhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-SSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-ta~e~l~  230 (454)
                      ...........+... ........          ...++...++|     .+||+.||++|| |+++++.
T Consensus       236 ~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~l~~li-----~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          236 QGDQLSVMGAHINQA-IPRPSTVR----------PGIPVAFDAVI-----ARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             CSCHHHHHHHHHHSC-CCCGGGTS----------TTCCTHHHHHH-----HHHTCSSGGGSCSSHHHHHH
T ss_pred             CCchHHHHHHHhccC-CCCccccC----------CCCCHHHHHHH-----HHhccCCHHHHHHhHHHHHH
Confidence            222222111112111 11111110          11236677888     999999999999 7776664

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.89  E-value=1.4e-24  Score=212.92  Aligned_cols=149  Identities=28%  Similarity=0.368  Sum_probs=105.0

Q ss_pred             hhHHHHHHHHHHHHHHHHH---cCCcccCCCCCcEEEccCCC-eEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHS---QGIIHRDLKPVNIFIDYEDH-VKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~---~giiHrDLKp~NILl~~~~~-vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.++.|++.||+|||+   +||+||||||+|||++.++. +||+|||++.....                       
T Consensus       102 ~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~-----------------------  158 (307)
T 2eva_A          102 AHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQT-----------------------  158 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC-----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccccccccc-----------------------
Confidence            3578899999999999999   89999999999999998887 79999999975421                       


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                           ......||+.|+|||++.   +..++.++  ||||+              |+++|||++|+.+            
T Consensus       159 -----~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~g~~p------------  202 (307)
T 2eva_A          159 -----HMTNNKGSAAWMAPEVFE---GSNYSEKC--DVFSW--------------GIILWEVITRRKP------------  202 (307)
T ss_dssp             -----------CCTTSSCHHHHT---CCCCCTHH--HHHHH--------------HHHHHHHHHTCCT------------
T ss_pred             -----ccccCCCCCceEChhhhC---CCCCCcHH--HHHHH--------------HHHHHHHHHCCCC------------
Confidence                 123346899999999998   66788888  99999              9999997765532            


Q ss_pred             CCCCCCc--hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         158 NGPSTGS--NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       158 ~~p~~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                         +...  .................+..             .++...+++     .+||+.||++|||++|+++
T Consensus       203 ---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~dp~~Rps~~ell~  256 (307)
T 2eva_A          203 ---FDEIGGPAFRIMWAVHNGTRPPLIKN-------------LPKPIESLM-----TRCWSKDPSQRPSMEEIVK  256 (307)
T ss_dssp             ---TTTTCSSHHHHHHHHHTTCCCCCBTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             ---chhhCccHHHHHHHHhcCCCCCcccc-------------cCHHHHHHH-----HHHhcCChhhCcCHHHHHH
Confidence               1111  11111112222222222222             125667788     9999999999999999987

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.89  E-value=1e-24  Score=230.34  Aligned_cols=153  Identities=23%  Similarity=0.307  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....                        ..
T Consensus       363 ~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~------------------------~~  418 (535)
T 2h8h_A          363 PQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDN------------------------EY  418 (535)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCH------------------------HH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCC------------------------ce
Confidence            467899999999999999999999999999999999999999999999854211                        01


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......+|..|+|||++.   ...|+.++  ||||+              ||++|||++ |+.               |
T Consensus       419 ~~~~~~~~~~~y~aPE~~~---~~~~~~~s--DvwSl--------------Gv~l~el~t~g~~---------------P  464 (535)
T 2h8h_A          419 TARQGAKFPIKWTAPEAAL---YGRFTIKS--DVWSF--------------GILLTELTTKGRV---------------P  464 (535)
T ss_dssp             HTTCSTTSCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHTTTTCC---------------S
T ss_pred             ecccCCcCcccccCHHHhc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1123345788999999988   66788888  99999              999999876 443               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+......+..+........+...             .+.+.++|     .+||+.||++|||+++++.
T Consensus       465 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~dP~~RPt~~~l~~  516 (535)
T 2h8h_A          465 YPGMVNREVLDQVERGYRMPCPPEC-------------PESLHDLM-----CQCWRKEPEERPTFEYLQA  516 (535)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHcCCChhHCcCHHHHHH
Confidence            4444444444444434333333332             25667788     9999999999999999886

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.89  E-value=8.1e-25  Score=211.66  Aligned_cols=155  Identities=25%  Similarity=0.319  Sum_probs=111.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||.|||++||+||||||+||+++.++.+||+|||++.......                      ...
T Consensus       121 ~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~----------------------~~~  178 (291)
T 1u46_A          121 GTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND----------------------DHY  178 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C----------------------CEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccccccc----------------------cch
Confidence            4678999999999999999999999999999999999999999999987542110                      001


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||..|+|||++.   +..++.++  ||||+              |+++|++++ ++.               |
T Consensus       179 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~~l~~~g~~---------------p  224 (291)
T 1u46_A          179 VMQEHRKVPFAWCAPESLK---TRTFSHAS--DTWMF--------------GVTLWEMFTYGQE---------------P  224 (291)
T ss_dssp             EC-----CCGGGCCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             hhhccCCCCceeeCchhhc---CCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1223456788999999987   66788888  99999              999999776 543               3


Q ss_pred             CCCchhhhhhhhhccCC-CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSP-PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...........+.... ....+..             .++...+++     .+||..||.+|||+.++++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~~l~~~p~~Rps~~~l~~  277 (291)
T 1u46_A          225 WIGLNGSQILHKIDKEGERLPRPED-------------CPQDIYNVM-----VQCWAHKPEDRPTFVALRD  277 (291)
T ss_dssp             TTTCCHHHHHHHHHTSCCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             cccCCHHHHHHHHHccCCCCCCCcC-------------cCHHHHHHH-----HHHccCCcccCcCHHHHHH
Confidence            33333333333332221 1111111             236677888     9999999999999999886

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.89  E-value=2.2e-24  Score=215.36  Aligned_cols=169  Identities=17%  Similarity=0.192  Sum_probs=113.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC--CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~--~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++  .+||+|||+|+.........                  ..
T Consensus       159 ~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~------------------~~  220 (352)
T 2jii_A          159 RSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHV------------------AY  220 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCC------------------CC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccc------------------cc
Confidence            46889999999999999999999999999999999988  89999999998653211000                  01


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .........||+.|+|||++.   +..++.++  ||||+              |+++|||++|+.+.....         
T Consensus       221 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~~g~~pf~~~~---------  272 (352)
T 2jii_A          221 VEGSRSPHEGDLEFISMDLHK---GCGPSRRS--DLQSL--------------GYCMLKWLYGFLPWTNCL---------  272 (352)
T ss_dssp             CTTSSCTTCSCTTTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSCCTTGGGT---------
T ss_pred             cccccccccCCccccCHHHHc---cCCCCchh--hHHHH--------------HHHHHHHHhCCCCcccCC---------
Confidence            112334568999999999988   56788888  99999              999999776553111000         


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                       ............+. .....++...  ..|     ...++...+++     .+||+.||++|||++++++
T Consensus       273 -~~~~~~~~~~~~~~-~~~~~~~~~~--~~~-----~~~~~~l~~li-----~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          273 -PNTEDIMKQKQKFV-DKPGPFVGPC--GHW-----IRPSETLQKYL-----KVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             -TCHHHHHHHHHHHH-HSCCCEECTT--SCE-----ECCCHHHHHHH-----HHHHTCCTTCCCCHHHHHH
T ss_pred             -cCHHHHHHHHHhcc-CChhhhhhhc--ccc-----CCCcHHHHHHH-----HHHHhCChhhCCCHHHHHH
Confidence             00000011111111 1111111111  011     11236677888     9999999999999998875

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.89  E-value=1.3e-24  Score=214.58  Aligned_cols=170  Identities=20%  Similarity=0.269  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++.......                      ...
T Consensus       145 ~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~----------------------~~~  202 (326)
T 2w1i_A          145 IKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDK----------------------EYY  202 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSC----------------------SEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhccccc----------------------ccc
Confidence            3578999999999999999999999999999999999999999999997543110                      000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......+|..|+|||++.   +..++.++  ||||+              |+++|||+++...................
T Consensus       203 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Di~sl--------------G~il~el~tg~~~~~~~~~~~~~~~~~~~  263 (326)
T 2w1i_A          203 KVKEPGESPIFWYAPESLT---ESKFSVAS--DVWSF--------------GVVLYELFTYIEKSKSPPAEFMRMIGNDK  263 (326)
T ss_dssp             ECSSCCSCCGGGCCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHHTTCGGGSHHHHHHHHHCTTC
T ss_pred             ccccCCCCceeEECchhhc---CCCCCchh--hHHHH--------------HHHHHHHHhcCCCCCCCHHHHHHhhcccc
Confidence            1123456788899999987   66788888  99999              99999987765422211111111111111


Q ss_pred             CCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .... .......+........+..             .++...++|     ++||+.||++|||+.|+++
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          264 QGQMIVFHLIELLKNNGRLPRPDG-------------CPDEIYMIM-----TECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             CTHHHHHHHHHHHHTTCCCCCCTT-------------CCHHHHHHH-----HHHSCSSGGGSCCHHHHHH
T ss_pred             chhhhHHHHHHHhhcCCCCCCCCc-------------ccHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            1111 1122223332333323322             226667788     9999999999999998775

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.89  E-value=1.9e-24  Score=233.48  Aligned_cols=153  Identities=19%  Similarity=0.237  Sum_probs=113.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+|||++.++.+||+|||+|+....                        ...
T Consensus       491 ~~~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~------------------------~~~  546 (656)
T 2j0j_A          491 ASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED------------------------STY  546 (656)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCC------------------------Ccc
Confidence            35788999999999999999999999999999999999999999999975421                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              |+++|||++ |.+               |
T Consensus       547 ~~~~~~~~t~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~ellt~g~~---------------P  592 (656)
T 2j0j_A          547 YKASKGKLPIKWMAPESIN---FRRFTSAS--DVWMF--------------GVCMWEILMHGVK---------------P  592 (656)
T ss_dssp             -------CCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eeccCCCCCcceeCHHHhc---CCCCCchh--hHHHH--------------HHHHHHHHHcCCC---------------C
Confidence            1223456788999999997   66788888  99999              999999764 432               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+.......+|...             ++...++|     .+||+.||++|||+.|+++
T Consensus       593 f~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~~l~~dP~~RPs~~el~~  644 (656)
T 2j0j_A          593 FQGVKNNDVIGRIENGERLPMPPNC-------------PPTLYSLM-----TKCWAYDPSRRPRFTELKA  644 (656)
T ss_dssp             TTTCCHHHHHHHHHHTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccc-------------cHHHHHHH-----HHHcCCChhHCcCHHHHHH
Confidence            4444444444444444444444432             26667788     9999999999999998875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.89  E-value=6e-24  Score=208.48  Aligned_cols=160  Identities=21%  Similarity=0.285  Sum_probs=110.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++ ++.+||+|||++........                    ....
T Consensus       130 ~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~--------------------~~~~  188 (319)
T 2y4i_B          130 NKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQA--------------------GRRE  188 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC------------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccccccccc--------------------cccc
Confidence            46899999999999999999999999999999998 78999999999875421100                    0112


Q ss_pred             CCCcCcccccceeccccccccc------cccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGV------KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIR  155 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~------~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~  155 (454)
                      .......||+.|+|||++....      ...|+.++  ||||+              |+++|||++++.           
T Consensus       189 ~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~--Di~sl--------------G~il~el~~g~~-----------  241 (319)
T 2y4i_B          189 DKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHS--DVFAL--------------GTIWYELHAREW-----------  241 (319)
T ss_dssp             CSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHH--HHHHH--------------HHHHHHHHHSSC-----------
T ss_pred             cccccCCCcccccChHHhhhccccccccccCCCchh--hHHHH--------------HHHHHHHHhCCC-----------
Confidence            2344567999999999986211      23567777  99999              999999766543           


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                          |+...........+........+..            ..+....+++     .+||..||.+|||++++++
T Consensus       242 ----p~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~li-----~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          242 ----PFKTQPAEAIIWQMGTGMKPNLSQI------------GMGKEISDIL-----LFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             ----SSSSCCHHHHHHHHHTTCCCCCCCS------------SCCTTHHHHH-----HHHHCSSTTTSCCHHHHHH
T ss_pred             ----CCCCCCHHHHHHHhccCCCCCCCcC------------CCCHHHHHHH-----HHHhcCChhhCcCHHHHHH
Confidence                3333333333333332222222111            1225677888     9999999999999999886

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.89  E-value=3.8e-24  Score=204.37  Aligned_cols=150  Identities=18%  Similarity=0.225  Sum_probs=109.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ..++.++.||+.||+|||++|  |+||||||+|||++.++.++|+|||++...                           
T Consensus       111 ~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~---------------------------  163 (271)
T 3kmu_A          111 SQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSF---------------------------  163 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTT---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeee---------------------------
Confidence            468899999999999999999  999999999999999999999999886532                           


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                         ......||+.|+|||++.......++.++  ||||+              |+++||+++|+.               
T Consensus       164 ---~~~~~~~t~~y~aPE~~~~~~~~~~~~~~--Di~sl--------------G~il~el~~g~~---------------  209 (271)
T 3kmu_A          164 ---QSPGRMYAPAWVAPEALQKKPEDTNRRSA--DMWSF--------------AVLLWELVTREV---------------  209 (271)
T ss_dssp             ---SCTTCBSCGGGSCHHHHHSCGGGSCHHHH--HHHHH--------------HHHHHHHHHCSC---------------
T ss_pred             ---cccCccCCccccChhhhccCCCCCCCchh--hHHHH--------------HHHHHHHHhCCC---------------
Confidence               12235789999999998732223333367  99999              999999776543               


Q ss_pred             CCCCchhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         160 PSTGSNVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       160 p~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      |+............. ......++..             .++...+++     .+||+.||++|||++|+++
T Consensus       210 p~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~li-----~~~l~~~p~~Rps~~~il~  263 (271)
T 3kmu_A          210 PFADLSNMEIGMKVALEGLRPTIPPG-------------ISPHVSKLM-----KICMNEDPAKRPKFDMIVP  263 (271)
T ss_dssp             TTTTSCHHHHHHHHHHSCCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CccccChHHHHHHHHhcCCCCCCCCC-------------CCHHHHHHH-----HHHcCCChhhCcCHHHHHH
Confidence            333322222222221 2223333333             226677888     9999999999999998875

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.89  E-value=4.6e-25  Score=229.96  Aligned_cols=183  Identities=17%  Similarity=0.162  Sum_probs=120.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE---ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl---~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.|+.||+.||+|||++||+||||||+|||+   +.++.+||+|||+|+........                  ..
T Consensus       103 ~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~------------------~~  164 (483)
T 3sv0_A          103 KTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTH------------------QH  164 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTC------------------CB
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccc------------------cc
Confidence            4688999999999999999999999999999999   68889999999999865321100                  00


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      .........+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.+             
T Consensus       165 ~~~~~~~~~~gt~~Y~aPE~~~---~~~~s~~s--DvwSl--------------Gvil~elltG~~P-------------  212 (483)
T 3sv0_A          165 IPYRENKNLTGTARYASVNTHL---GIEQSRRD--DLESL--------------GYVLMYFLRGSLP-------------  212 (483)
T ss_dssp             CCCCCCCCCCSCTTTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSCT-------------
T ss_pred             cccccccccCCCccccCHHHhc---CCCCChHH--HHHHH--------------HHHHHHHHhCCCC-------------
Confidence            1122344678999999999998   67788888  99999              9999997665431             


Q ss_pred             CCCCCch---hhhhhhhhccCCC-CCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc--Cc
Q psy7309         159 GPSTGSN---VQKSLQKFQKSPP-SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC--QP  232 (454)
Q Consensus       159 ~p~~~~~---~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~--hp  232 (454)
                        +.+..   ....+..+..... .......          .....++.++|     .+||+.||.+||+++++++  ..
T Consensus       213 --f~~~~~~~~~~~~~~i~~~~~~~~~~~l~----------~~~p~~l~~li-----~~cl~~dP~~RPs~~el~~~L~~  275 (483)
T 3sv0_A          213 --WQGLKAGTKKQKYEKISEKKVATSIEALC----------RGYPTEFASYF-----HYCRSLRFDDKPDYSYLKRLFRD  275 (483)
T ss_dssp             --TSSCCCSSHHHHHHHHHHHHHHSCHHHHH----------TTSCHHHHHHH-----HHHHTCCTTCCCCHHHHHHHHHH
T ss_pred             --CccccchhHHHHHHHHhhccccccHHHHh----------cCCcHHHHHHH-----HHHhcCChhhCcCHHHHHHHHHH
Confidence              11110   0011111100000 0000000          11125667777     9999999999999998865  22


Q ss_pred             ccccCCCCCCCccCccccc
Q psy7309         233 ISLEGSSSGLSVLGSEQLL  251 (454)
Q Consensus       233 ~f~~~~~~~~~~~~~~~ll  251 (454)
                      .+..........++|+.+.
T Consensus       276 l~~~~~~~~~~~~dW~~~~  294 (483)
T 3sv0_A          276 LFIREGFQFDYVFDWTILK  294 (483)
T ss_dssp             HHHHTTCCCSSCCHHHHHT
T ss_pred             HHHHcCCCccCCcCchhhc
Confidence            3333333333456666443

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.88  E-value=6.3e-25  Score=220.42  Aligned_cols=101  Identities=19%  Similarity=0.233  Sum_probs=85.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-----------CCCeEEecccchhhhhhhcCCCccccccCccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-----------EDHVKIGDFGLATNILQKHAGPLARELTGYILP   70 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-----------~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~   70 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.           ++.+||+|||+|+.....               
T Consensus       172 ~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~---------------  236 (365)
T 3e7e_A          172 GLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLF---------------  236 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGS---------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhcc---------------
Confidence            358999999999999999999999999999999998           899999999999754311               


Q ss_pred             CCCCCCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          71 PIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                              ......+..+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.
T Consensus       237 --------~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--Diwsl--------------G~il~elltg~~  283 (365)
T 3e7e_A          237 --------PKGTIFTAKCETSGFQCVEMLS---NKPWNYQI--DYFGV--------------AATVYCMLFGTY  283 (365)
T ss_dssp             --------CTTEEECCSSCTTSCCCHHHHT---TCCBSTHH--HHHHH--------------HHHHHHHHHSSC
T ss_pred             --------CCCceeeeecCCCCCCChHHhc---CCCCCccc--cHHHH--------------HHHHHHHHhCCC
Confidence                    1122345578999999999998   66789988  99999              999999877653

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.88  E-value=4.6e-24  Score=208.77  Aligned_cols=153  Identities=29%  Similarity=0.450  Sum_probs=102.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||.|||++||+||||||+||+++.++.+||+|||++.....                         ..
T Consensus       136 ~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~-------------------------~~  190 (310)
T 2wqm_A          136 RTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSS-------------------------KT  190 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC-----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecC-------------------------CC
Confidence            35789999999999999999999999999999999999999999999875432                         11


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.   +..++.++  ||||+              |+++|++++++..               +
T Consensus       191 ~~~~~~~~~~~y~aPE~~~---~~~~~~~~--Dv~sl--------------G~il~~l~~g~~p---------------~  236 (310)
T 2wqm_A          191 TAAHSLVGTPYYMSPERIH---ENGYNFKS--DIWSL--------------GCLLYEMAALQSP---------------F  236 (310)
T ss_dssp             --------CCSSCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSCT---------------T
T ss_pred             ccccccCCCeeEeChHHhC---CCCCCchh--hHHHH--------------HHHHHHHHhCCCC---------------C
Confidence            1233457899999999987   56788888  99999              9999997765432               1


Q ss_pred             CCc--hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGS--NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~--~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.  ........+........+.            ...++...+++     .+||+.||++|||++++++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~l~~li-----~~~l~~dp~~Rps~~~il~  290 (310)
T 2wqm_A          237 YGDKMNLYSLCKKIEQCDYPPLPS------------DHYSEELRQLV-----NMCINPDPEKRPDVTYVYD  290 (310)
T ss_dssp             C---CCHHHHHHHHHTTCSCCCCT------------TTSCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             cccchhHHHHHHHhhcccCCCCcc------------cccCHHHHHHH-----HHHcCCChhhCCCHHHHHH
Confidence            111  1111222222222111111            11235677888     9999999999999998875

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.88  E-value=3.2e-24  Score=210.36  Aligned_cols=167  Identities=25%  Similarity=0.252  Sum_probs=111.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++||+||||||+|||++.++.+||+|||++...........                .....
T Consensus       134 ~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~----------------~~~~~  197 (317)
T 2buj_A          134 DQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSR----------------QALTL  197 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHH----------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhccccccccc----------------ccccc
Confidence            46889999999999999999999999999999999999999999998864321000000                00000


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.......++.++  ||||+              |+++|+|++|+.+.......         
T Consensus       198 ~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~--Di~sl--------------G~il~el~~g~~p~~~~~~~---------  252 (317)
T 2buj_A          198 QDWAAQRCTISYRAPELFSVQSHCVIDERT--DVWSL--------------GCVLYAMMFGEGPYDMVFQK---------  252 (317)
T ss_dssp             HHHHHHHSCGGGCCGGGSSCCSEEEECTHH--HHHHH--------------HHHHHHHHHSSCTTHHHHHT---------
T ss_pred             cccccccCCcccCCHhHhccCCCcCCCchh--hHHHH--------------HHHHHHHHhCCCChhhhhcc---------
Confidence            011235679999999998733334577888  99999              99999977765432211100         


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                       ....   ...+..  ...++..           ...++...++|     .+||+.||.+|||++|++++
T Consensus       253 -~~~~---~~~~~~--~~~~~~~-----------~~~~~~l~~li-----~~~l~~dp~~Rps~~~ll~~  300 (317)
T 2buj_A          253 -GDSV---ALAVQN--QLSIPQS-----------PRHSSALWQLL-----NSMMTVDPHQRPHIPLLLSQ  300 (317)
T ss_dssp             -TSCH---HHHHHC--C--CCCC-----------TTSCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             -cchh---hHHhhc--cCCCCcc-----------ccCCHHHHHHH-----HHHhhcChhhCCCHHHHHHH
Confidence             0000   011111  1111111           11235667788     99999999999999999975

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.88  E-value=6.6e-24  Score=206.97  Aligned_cols=143  Identities=22%  Similarity=0.343  Sum_probs=100.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..++.++.||+.||+|||++||+||||||+|||++.   ++.+||+|||+|....                         
T Consensus       117 ~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~-------------------------  171 (299)
T 3m2w_A          117 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-------------------------  171 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECT-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEeccccccccc-------------------------
Confidence            468899999999999999999999999999999998   7889999999886321                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                                               +..|+.++  ||||+              ||++|||++|+.              
T Consensus       172 -------------------------~~~~~~~~--Diwsl--------------G~il~el~tg~~--------------  196 (299)
T 3m2w_A          172 -------------------------GEKYDKSC--DMWSL--------------GVIMYILLCGYP--------------  196 (299)
T ss_dssp             -------------------------TCGGGGHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             -------------------------cccCCchh--hHHHH--------------HHHHHHHHHCCC--------------
Confidence                                     13456677  99999              999999776554              


Q ss_pred             CCCCCchhhhhhhhhc---cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         159 GPSTGSNVQKSLQKFQ---KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~---~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                       |+.............   ......++..    .|     ...++...++|     .+||+.||.+|||++|+++||||.
T Consensus       197 -pf~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~~~~~li-----~~~l~~dP~~Rps~~e~l~hp~~~  261 (299)
T 3m2w_A          197 -PFYSNHGLAISPGMKTRIRMGQYEFPNP----EW-----SEVSEEVKMLI-----RNLLKTEPTQRMTITEFMNHPWIM  261 (299)
T ss_dssp             -SCCC-------CCSCCSSCTTCCSSCHH----HH-----TTSCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSHHHH
T ss_pred             -CCCCCcchhhhHHHHHHHhhccccCCch----hc-----ccCCHHHHHHH-----HHHcccChhhCCCHHHHhcChhhc
Confidence             222211111110000   0111111110    01     12346777888     999999999999999999999998


Q ss_pred             cCCC
Q psy7309         236 EGSS  239 (454)
Q Consensus       236 ~~~~  239 (454)
                      ....
T Consensus       262 ~~~~  265 (299)
T 3m2w_A          262 QSTK  265 (299)
T ss_dssp             TGGG
T ss_pred             cccc
Confidence            6554

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.88  E-value=2.7e-24  Score=209.97  Aligned_cols=100  Identities=28%  Similarity=0.404  Sum_probs=81.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||++......                       ...
T Consensus       133 ~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~-----------------------~~~  189 (307)
T 2nru_A          133 HMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKF-----------------------AQT  189 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSC-----------------------SSC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeecccccccccc-----------------------ccc
Confidence            357899999999999999999999999999999999999999999998754210                       011


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      .......||+.|+|||++.    ..++.++  ||||+              |+++|+|++|.+
T Consensus       190 ~~~~~~~g~~~y~aPE~~~----~~~~~~~--Dv~sl--------------G~il~~l~~g~~  232 (307)
T 2nru_A          190 VMTSRIVGTTAYMAPEALR----GEITPKS--DIYSF--------------GVVLLEIITGLP  232 (307)
T ss_dssp             EECSSCCSCGGGCCHHHHT----TEECTHH--HHHHH--------------HHHHHHHHHCCC
T ss_pred             ccccccCCCcCcCChHHhc----CCCCccc--hhHHH--------------HHHHHHHHHCCC
Confidence            1223457999999999876    3477788  99999              999999766543

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.88  E-value=5.9e-24  Score=210.56  Aligned_cols=175  Identities=19%  Similarity=0.207  Sum_probs=111.3

Q ss_pred             hhHHHHHHHHHHHHHHHH--------HcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIH--------SQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID   73 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH--------~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~   73 (454)
                      .+++.++.|++.||.|||        ++||+||||||+|||++.++.+||+|||++........                
T Consensus       139 ~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~----------------  202 (342)
T 1b6c_B          139 EGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATD----------------  202 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceecccccc----------------
Confidence            468899999999999999        89999999999999999999999999999975432100                


Q ss_pred             CCCcccCCCCCcCcccccceecccccccccc---ccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHH
Q psy7309          74 STAFYSHDTSHTGQVGTALYAAPELDSHGVK---AMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEEL  150 (454)
Q Consensus        74 ~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~---~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l  150 (454)
                           ..........||+.|+|||++.....   ..++.++  ||||+              |+++|||+++.+....  
T Consensus       203 -----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~--Di~sl--------------G~il~el~tg~~~~~~--  259 (342)
T 1b6c_B          203 -----TIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRA--DIYAM--------------GLVFWEIARRCSIGGI--  259 (342)
T ss_dssp             -----EEEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHH--HHHHH--------------HHHHHHHHTTBCBTTB--
T ss_pred             -----ccccccccCCcCcccCCHhhhcccccccccccCCcc--cHHHH--------------HHHHHHHHhccCcCCc--
Confidence                 00112345689999999999872211   1344567  99999              9999998775321000  


Q ss_pred             HHHhhhcCCCCCCc-----hhhhhhhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC
Q psy7309         151 KHNIRRENGPSTGS-----NVQKSLQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS  224 (454)
Q Consensus       151 ~~~i~~~~~p~~~~-----~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt  224 (454)
                         ......|+...     ........+. ....+.++..     |.   .........+++     .+||+.||++|||
T Consensus       260 ---~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~l~~li-----~~cl~~dp~~Rps  323 (342)
T 1b6c_B          260 ---HEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPNIPNR-----WQ---SCEALRVMAKIM-----RECWYANGAARLT  323 (342)
T ss_dssp             ---CCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCCCCGG-----GG---TSHHHHHHHHHH-----HHHCCSSGGGSCC
T ss_pred             ---ccccccCccccCcCcccHHHHHHHHHHHHhCCCCccc-----cc---chhHHHHHHHHH-----HHHhccChhhCCC
Confidence               00001122221     1122222221 1122222221     10   011113445566     9999999999999


Q ss_pred             hhhhhcC
Q psy7309         225 SEQNLCQ  231 (454)
Q Consensus       225 a~e~l~h  231 (454)
                      ++|+++|
T Consensus       324 ~~~i~~~  330 (342)
T 1b6c_B          324 ALRIKKT  330 (342)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9998874

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.87  E-value=1.4e-23  Score=213.29  Aligned_cols=101  Identities=26%  Similarity=0.445  Sum_probs=81.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEE----ccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI----DYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl----~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.++.||+.||+|||++||+||||||+|||+    +.++.+||+|||+|+....                       
T Consensus       112 ~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~-----------------------  168 (396)
T 4eut_A          112 SEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELED-----------------------  168 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCC-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccC-----------------------
Confidence            4688999999999999999999999999999999    7777899999999975421                       


Q ss_pred             ccCCCCCcCcccccceecccccccc-----ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHG-----VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~-----~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                         .......+||+.|+|||++...     ....|+.++  ||||+              ||++|||++|+.
T Consensus       169 ---~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~--DiwSl--------------G~il~el~tg~~  221 (396)
T 4eut_A          169 ---DEQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATV--DLWSI--------------GVTFYHAATGSL  221 (396)
T ss_dssp             ---GGGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHH--HHHHH--------------HHHHHHHHHSSC
T ss_pred             ---CCccccccCCccccCHHHhhccccccccccCCCcHH--HHHHH--------------HHHHHHHHHCCC
Confidence               1123346799999999998611     025678888  99999              888888766543

>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A

Probab=99.87  E-value=2.5e-22  Score=208.42  Aligned_cols=142  Identities=10%  Similarity=0.010  Sum_probs=129.9

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc-C
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQN-G  381 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~-~  381 (454)
                      |..+.+++.|++.++++|+++||.+|.||+|++.+++..+      .+++|+| |.+|+.++||||.|.|++|+++.+ .
T Consensus        46 P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~-d~~~~~l~LRP~~t~~i~~~~~~~~~  124 (471)
T 3a32_A           46 LGGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLF-DIEGHEFAVKPMNCPYHILLFLNEVA  124 (471)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEE-EETTEEEEECSCSHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEE-ecCCcEEEEccccHHHHHHHHHhhhh
Confidence            8888899999999999999999999999999999998543      3689999 999999999999999999998864 1


Q ss_pred             --C---CCceeeEeecCccccCCCC--CC--ccceEEEEEEEEEcCCCCcccH--HHHHHHHHHHHHh-CCC----CCcE
Q psy7309         382 --S---IVSMKRYCIDRVFRERRVL--GF--HPRELYECAFDIVTNTPGVLTM--GSLRRCLMGSFRR-FNY----GNIS  445 (454)
Q Consensus       382 --~---~~~~k~~y~g~vfR~~~~~--~g--~~rE~~Q~g~eiig~~~~~~~d--~e~~~~~~~~l~~-~~~----~~~~  445 (454)
                        .   ..|+|+||+|+|||++.++  .|  |.|||+|+|+|++|.+ +..+|  +|++.++.++|+. ||+    +++.
T Consensus       125 s~r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~~~-~~~~de~~e~i~~~~~~l~~~lGl~~~~~~~~  203 (471)
T 3a32_A          125 KHRSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIVPG-GRVIDVVYDVFEEMKLVLERLFKLGVSSETFK  203 (471)
T ss_dssp             HHGGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEEG-GGHHHHHHHHHHHHHHHHHHTSCCCCSTTTEE
T ss_pred             hccccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEcCh-HHHHHHHHHHHHHHHHHHHHhhCCCcCCCCeE
Confidence              1   4799999999999999888  89  9999999999999987 77888  9999999999999 999    7899


Q ss_pred             EEcCccc
Q psy7309         446 FAPHPRV  452 (454)
Q Consensus       446 i~i~~~~  452 (454)
                      |.+|++.
T Consensus       204 l~i~~~~  210 (471)
T 3a32_A          204 VRLSMSD  210 (471)
T ss_dssp             EEEECCC
T ss_pred             EEEecCC
Confidence            9999974

>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A*

Probab=99.86  E-value=1.6e-22  Score=209.15  Aligned_cols=155  Identities=12%  Similarity=0.049  Sum_probs=137.2

Q ss_pred             hCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeE
Q psy7309         290 FNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIV  363 (454)
Q Consensus       290 f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~  363 (454)
                      +.+...++.|++       |..+.++++|++.+++.|.++||.+|.||+|++.+++..+      .++||+|.|++|+.+
T Consensus        52 i~~~~~G~~d~l-------P~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~  124 (458)
T 2i4l_A           52 LRQEAAGIYAWL-------PLGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKREL  124 (458)
T ss_dssp             EEEEETTEEEEC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEE
T ss_pred             eeccCCcceEEC-------CCHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeE
Confidence            345556677777       8888999999999999999999999999999999987543      368999999999999


Q ss_pred             eeCC---CCCHHHHHHHHHcCCCCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcCCCCcccHHHHHHH---HHH
Q psy7309         364 TLPH---DLRIPFARYLAQNGSIVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTNTPGVLTMGSLRRC---LMG  434 (454)
Q Consensus       364 ~Lr~---d~T~p~aR~~a~~~~~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~~~~~~~d~e~~~~---~~~  434 (454)
                      +|||   |+|.+++|..++.....|+|+||+|+|||++ +++.|  |.|||+|+|++++|.+ +..+|+|++.+   +.+
T Consensus       125 ~LrPt~ee~t~~i~r~~~~s~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~-~~~ad~e~~~~~~~~~~  203 (458)
T 2i4l_A          125 LYGPTNEEMITEIFRAYIKSYKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVD-EAGARKSYNKMFVAYLR  203 (458)
T ss_dssp             EECSCCHHHHHHHHHHHCCBGGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESS-HHHHHHHHHHHHHHHHH
T ss_pred             EECCCChHHHHHHHHHHHhhccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECC-HHHHHHHHHHHHHHHHH
Confidence            9999   9999999998764336899999999999998 88889  9999999999999987 78899998755   999


Q ss_pred             HHHhCCCCCcEEEcCcccc
Q psy7309         435 SFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       435 ~l~~~~~~~~~i~i~~~~~  453 (454)
                      +|+++|++ +.+.+|+++.
T Consensus       204 i~~~lGl~-~~~~~~~~g~  221 (458)
T 2i4l_A          204 TFARMGLK-AIPMRAETGP  221 (458)
T ss_dssp             HHHTTTCC-EEEEECCCCS
T ss_pred             HHHHcCCc-eEEEEccccc
Confidence            99999996 9999988753

>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A*

Probab=99.85  E-value=8.8e-22  Score=211.77  Aligned_cols=143  Identities=11%  Similarity=0.058  Sum_probs=131.3

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCC-CeEeeCCCCCHHHHHHHHHcC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGG-SIVTLPHDLRIPFARYLAQNG  381 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G-~~~~Lr~d~T~p~aR~~a~~~  381 (454)
                      |..+.++++|++.++++|.++||.+|.||.|++.+++..+      .++||++.|.+| +.++|||+.|.+++|.++.+.
T Consensus       268 P~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~  347 (645)
T 1nyr_A          268 PNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKP  347 (645)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSC
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhh
Confidence            8888999999999999999999999999999999998653      368999999999 999999999999999998753


Q ss_pred             C---CCceeeEeecCccccCCCC--CC--ccceEEEEEEEEEcCCCCcccH--HHHHHHHHHHHHhCCCCCcEEEcCccc
Q psy7309         382 S---IVSMKRYCIDRVFRERRVL--GF--HPRELYECAFDIVTNTPGVLTM--GSLRRCLMGSFRRFNYGNISFAPHPRV  452 (454)
Q Consensus       382 ~---~~~~k~~y~g~vfR~~~~~--~g--~~rE~~Q~g~eiig~~~~~~~d--~e~~~~~~~~l~~~~~~~~~i~i~~~~  452 (454)
                      .   ..|+|+||+|+|||++.++  .|  |.|||+|+|++++|.+ +..+|  +|++.++.++|+.+|+++|.+++|++.
T Consensus       348 ~syr~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~Q~d~~~f~~~-~~~~d~~~e~i~~~~~~l~~lGl~~~~~~l~~~~  426 (645)
T 1nyr_A          348 HSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRP-DQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYRD  426 (645)
T ss_dssp             CBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECG-GGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEECC
T ss_pred             hhccCCCeEEEEeccEEecCCCccccCcceeeeEEEccEEEEcCH-HHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            2   4799999999999998876  56  9999999999999987 77888  999999999999999989999999875

>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A*

Probab=99.84  E-value=7.9e-21  Score=193.47  Aligned_cols=152  Identities=8%  Similarity=0.019  Sum_probs=133.3

Q ss_pred             hCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeE
Q psy7309         290 FNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIV  363 (454)
Q Consensus       290 f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~  363 (454)
                      |.+...++.|++       |....+++.|++.++++|.++||.+|.||+|++.+++..+      .++||+ .|.+|+.+
T Consensus        15 ~~~~~~G~~d~l-------P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~-~d~~~~~~   86 (401)
T 1evl_A           15 MQEEAPGMVFWH-------NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFT-TSSENREY   86 (401)
T ss_dssp             CCTTSTTCCEEC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCE-EEETTEEE
T ss_pred             ecCCCCcceEEC-------chHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEe-EecCCceE
Confidence            355556667777       8888899999999999999999999999999999988643      368999 99999999


Q ss_pred             eeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCC--CCC--ccceEEEEEEEEEcCCCCcccHH---HHHHHHH
Q psy7309         364 TLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRV--LGF--HPRELYECAFDIVTNTPGVLTMG---SLRRCLM  433 (454)
Q Consensus       364 ~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~--~~g--~~rE~~Q~g~eiig~~~~~~~d~---e~~~~~~  433 (454)
                      +|||+.|.|++|.++.+..   ..|+|+||+|+|||++.+  +.|  |.|||+|+|++++|.  ...+|+   |++.++.
T Consensus        87 ~LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~p~~Gl~R~reF~q~d~~~f~~--~~~~~~e~~e~i~~~~  164 (401)
T 1evl_A           87 CIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCT--EEQIRDEVNGCIRLVY  164 (401)
T ss_dssp             EECSCSHHHHHHHHTSSCCBGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEEC--GGGHHHHHHHHHHHHH
T ss_pred             EEcCCCCHHHHHHHHhhhhhhhhCChhhccccceecCCCCcccccccccCcEEecceEEeCC--HHHHHHHHHHHHHHHH
Confidence            9999999999999886422   479999999999999884  788  999999999999985  566788   5899999


Q ss_pred             HHHHhCCCCCcEEEcCcc
Q psy7309         434 GSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       434 ~~l~~~~~~~~~i~i~~~  451 (454)
                      ++|+.+|++++.+.+|++
T Consensus       165 ~~~~~lgl~~~~~~~~~~  182 (401)
T 1evl_A          165 DMYSTFGFEKIVVKLSTR  182 (401)
T ss_dssp             HHHHTTTCSCCEEEEECC
T ss_pred             HHHHHcCCCceEEEEecC
Confidence            999999998899999986

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.83  E-value=1.2e-22  Score=220.61  Aligned_cols=144  Identities=25%  Similarity=0.302  Sum_probs=107.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||.|||++|||||||||+|||++.+ .+||+|||+++....                           
T Consensus       182 ~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~---------------------------  233 (681)
T 2pzi_A          182 AEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINS---------------------------  233 (681)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhccc---------------------------
Confidence            4688999999999999999999999999999999874 899999999975421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                        ....+||+.|+|||++.    ..++.++  ||||+              ||++|+|+++.+..               
T Consensus       234 --~~~~~gt~~y~aPE~~~----~~~~~~s--Di~sl--------------G~~l~~l~~g~~~~---------------  276 (681)
T 2pzi_A          234 --FGYLYGTPGFQAPEIVR----TGPTVAT--DIYTV--------------GRTLAALTLDLPTR---------------  276 (681)
T ss_dssp             --CSCCCCCTTTSCTTHHH----HCSCHHH--HHHHH--------------HHHHHHHHSCCCEE---------------
T ss_pred             --CCccCCCccccCHHHHc----CCCCCce--ehhhh--------------HHHHHHHHhCCCCC---------------
Confidence              14467999999999986    2346677  99999              99999977654311               


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+..            ....+...   .+     ...++...++|     .+||+.||++||++.+++.|+|+.
T Consensus       277 ~~~~------------~~~~~~~~---~~-----~~~~~~l~~li-----~~~l~~dP~~R~~~~~~l~~~l~~  325 (681)
T 2pzi_A          277 NGRY------------VDGLPEDD---PV-----LKTYDSYGRLL-----RRAIDPDPRQRFTTAEEMSAQLTG  325 (681)
T ss_dssp             TTEE------------CSSCCTTC---HH-----HHHCHHHHHHH-----HHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             cccc------------cccccccc---cc-----cccCHHHHHHH-----hhhccCChhhCCCHHHHHHHHHHH
Confidence            1000            00011110   00     01124566777     999999999999999999998875

>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A*

Probab=99.83  E-value=7e-21  Score=202.43  Aligned_cols=153  Identities=13%  Similarity=0.069  Sum_probs=133.6

Q ss_pred             CCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEe
Q psy7309         291 NQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVT  364 (454)
Q Consensus       291 ~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~  364 (454)
                      .+..+++.+++       |..+.++++|++.++++|+++||.+|.||+|++.+++..+      .++||+|.|++|+.++
T Consensus        33 ~~~~~G~~~~l-------P~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~  105 (572)
T 2j3l_A           33 RQVAAGIYSYL-------PLANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYI  105 (572)
T ss_dssp             EEEETTEEEEC-------HHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEE
T ss_pred             cccCCCeeeeC-------CHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEE
Confidence            34445666666       8888899999999999999999999999999999987532      3689999999999999


Q ss_pred             eCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCC-CCC--ccceEEEEEEEEEcCCCCcccHHHHH---HHHHHH
Q psy7309         365 LPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRV-LGF--HPRELYECAFDIVTNTPGVLTMGSLR---RCLMGS  435 (454)
Q Consensus       365 Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~-~~g--~~rE~~Q~g~eiig~~~~~~~d~e~~---~~~~~~  435 (454)
                      |||+.|.+++|+++.+..   ..|+|+||+|+|||++.+ +.|  |.|||+|+|++++|.+ +..+|+|++   .++.++
T Consensus       106 LrP~~~~~~~~~~~~~~~s~~~lP~r~~~~g~~fR~E~~~~~Gl~R~ReF~q~d~~~f~~~-~~~~~~e~~~~~~~~~~~  184 (572)
T 2j3l_A          106 LGPTHEETFTELIRDEINSYKRLPLNLYQIQTKYRDEKRSRSGLLRGREFIMKDGYSFHAD-EASLDQSYRDYEKAYSRI  184 (572)
T ss_dssp             ECSCCHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCCTGGGSCSEEEEEEEEEEESS-HHHHHHHHHHHHHHHHHH
T ss_pred             EccccHHHHHHHHHhhccChhhcCHhhheecCeeccCcCcccCccccceeEEeeeEEEcCC-HHHHHHHHHHHHHHHHHH
Confidence            999999999998886532   479999999999999887 467  9999999999999997 788899965   489999


Q ss_pred             HHhCCCCCcEEEcCccc
Q psy7309         436 FRRFNYGNISFAPHPRV  452 (454)
Q Consensus       436 l~~~~~~~~~i~i~~~~  452 (454)
                      |+.||+. |.+.+|+++
T Consensus       185 ~~~lgl~-~~~~~~~~g  200 (572)
T 2j3l_A          185 FERCGLE-FRAIIGDGG  200 (572)
T ss_dssp             HHHTTCC-EEEEECCGG
T ss_pred             HHHcCCc-EEEEecccc
Confidence            9999996 999998865

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.83  E-value=5.6e-22  Score=210.66  Aligned_cols=97  Identities=20%  Similarity=0.227  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      +.+|++||+.||+|+|++|||||||||+|||++.+|++||+|||+|+....                         ....
T Consensus       341 ~~~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~-------------------------~~~~  395 (569)
T 4azs_A          341 REKILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQ-------------------------DCSW  395 (569)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC----------------------------CC
T ss_pred             HHHHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCC-------------------------CCcc
Confidence            457999999999999999999999999999999999999999999985431                         2234


Q ss_pred             CcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK  145 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~  145 (454)
                      .++.+||+.|||||++.    +.+...+  |+||+              |++++++..+...
T Consensus       396 ~~t~vGTp~YmAPE~l~----g~~~~~~--d~~s~--------------g~~~~~l~~~~~~  437 (569)
T 4azs_A          396 PTNLVQSFFVFVNELFA----ENKSWNG--FWRSA--------------PVHPFNLPQPWSN  437 (569)
T ss_dssp             SHHHHHHHHHHHHHHC-------------------------------------CCCCTTHHH
T ss_pred             ccCceechhhccHHHhC----CCCCCcc--ccccc--------------ccchhhhccccch
Confidence            55689999999999987    3466677  99999              9999998765543

>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A

Probab=99.83  E-value=2.4e-20  Score=193.07  Aligned_cols=151  Identities=13%  Similarity=0.027  Sum_probs=131.2

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc-c------ccccEEEEcCC----C
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA-T------SETTASVMTRG----G  360 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~-~------~~~~~~~~d~~----G  360 (454)
                      ++..++.+++       |..+.+++.|++.++++|+++||.+|.||+|++.+++.. +      .++||.|.|.+    |
T Consensus        31 ~~~~G~~d~l-------P~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~  103 (477)
T 1hc7_A           31 GPVRGTIVVR-------PYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELE  103 (477)
T ss_dssp             CSSTTCEEEC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEE
T ss_pred             cCCCCeEEEC-------ccHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCC
Confidence            3456666666       888999999999999999999999999999999999865 2      36899999987    8


Q ss_pred             CeEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCCCCC--ccceEEEEEEEEEcCCCCcccHHHHHHH---H
Q psy7309         361 SIVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRVLGF--HPRELYECAFDIVTNTPGVLTMGSLRRC---L  432 (454)
Q Consensus       361 ~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~~~g--~~rE~~Q~g~eiig~~~~~~~d~e~~~~---~  432 (454)
                      +.++|||+.|.+++|.++.+..   .+|+|+||+|+|||++.+++|  |.|||+|+|++++|.+ ...+|+|++.+   +
T Consensus       104 ~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~-~~~ad~E~~~~l~~~  182 (477)
T 1hc7_A          104 EPLAVRPTSETVIGYMWSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT-REEAEEEVRRMLSIY  182 (477)
T ss_dssp             EEEEECSCSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHHHH
T ss_pred             CeEEEcCCCcHHHHHHHHhhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCC-HHHHHHHHHHHHHHH
Confidence            9999999999999999886522   479999999999999966679  9999999999999988 88899998776   8


Q ss_pred             HHHH-HhCCCCCcEEEcCcc
Q psy7309         433 MGSF-RRFNYGNISFAPHPR  451 (454)
Q Consensus       433 ~~~l-~~~~~~~~~i~i~~~  451 (454)
                      .++| +.||+. +.+.++++
T Consensus       183 ~~i~~~~Lgl~-~~~~~~~~  201 (477)
T 1hc7_A          183 ARLAREYAAIP-VIEGLKTE  201 (477)
T ss_dssp             HHHHHHHHCCC-CEEEECCT
T ss_pred             HHHHHHhcCCe-EEEEeCCh
Confidence            9999 899996 99988874

>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1

Probab=99.81  E-value=6e-20  Score=189.48  Aligned_cols=163  Identities=15%  Similarity=0.122  Sum_probs=139.7

Q ss_pred             ChhHHHHHHH--HhCC--CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc-c-----
Q psy7309         279 SKGYKYLVAA--CFNQ--KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA-T-----  348 (454)
Q Consensus       279 s~~~~~~~~~--~f~q--~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~-~-----  348 (454)
                      +..|.+++..  ++..  +..++.+++       |..+.+++.|++.++++|+++||.+|.||+|++.+++.. .     
T Consensus         8 ~~~~~~l~~~~~li~~~~~~~G~~d~l-------P~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~   80 (459)
T 1nj8_A            8 SEWYSDILEKAEIYDVRYPIKGCGVYL-------PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKG   80 (459)
T ss_dssp             HHHHHHHHHHTSSCBCCSTTSSCCBBC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGG
T ss_pred             cHhHHHHHHhCCCccccCCCCceEEEC-------ChHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccc
Confidence            5566776654  3333  556666666       888899999999999999999999999999999998853 1     


Q ss_pred             -ccccEEEEcCC----CCeEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCC-CCC--ccceEE-EEEEEEE
Q psy7309         349 -SETTASVMTRG----GSIVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRV-LGF--HPRELY-ECAFDIV  416 (454)
Q Consensus       349 -~~~~~~~~d~~----G~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~-~~g--~~rE~~-Q~g~eii  416 (454)
                       .+++|.|.|.+    |+.++|||+.|.+++|+++.+..   ..|+|+||+|+|||++.+ ++|  |.|||+ |++++++
T Consensus        81 ~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~  160 (459)
T 1nj8_A           81 FEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTA  160 (459)
T ss_dssp             GGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEE
T ss_pred             cchhhEEEeccCcccCCCeeEECCCCcHHHHHHHHHhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEE
Confidence             36899999986    89999999999999999986421   579999999999999998 889  999999 9999999


Q ss_pred             cCCCCcccHHH---HHHHHHHHHHhCCCCCcEEEcCc
Q psy7309         417 TNTPGVLTMGS---LRRCLMGSFRRFNYGNISFAPHP  450 (454)
Q Consensus       417 g~~~~~~~d~e---~~~~~~~~l~~~~~~~~~i~i~~  450 (454)
                      |.+ ...+|+|   ++.++.++|+.||+. +.+.+++
T Consensus       161 ~~~-~~~a~~e~~~~i~~~~~~~~~LGl~-~~~~~~~  195 (459)
T 1nj8_A          161 HST-KEEAENQVKEAISIYKKFFDTLGIP-YLISKRP  195 (459)
T ss_dssp             ESS-HHHHHHHHHHHHHHHHHHHHHHTCC-CEEEEEC
T ss_pred             ECC-HHHHHHHHHHHHHHHHHHHHHCCCc-eEEeecC
Confidence            987 7889998   899999999999996 8887765

>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1

Probab=99.76  E-value=1.6e-18  Score=185.72  Aligned_cols=161  Identities=7%  Similarity=0.011  Sum_probs=136.7

Q ss_pred             hHHHHHHH----HhCCCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------cc
Q psy7309         281 GYKYLVAA----CFNQKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SE  350 (454)
Q Consensus       281 ~~~~~~~~----~f~q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~  350 (454)
                      ..+.+...    .|.+..+++.+++       |..+.+++.|++.+++.|.++||.+|.||.|++.+++..+      .+
T Consensus       243 dH~~lg~~l~l~~~~~~~~G~~~~l-------P~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~  315 (642)
T 1qf6_A          243 DHRKIGKQLDLYHMQEEAPGMVFWH-------NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKD  315 (642)
T ss_dssp             CHHHHHHHTTCEECCTTSTTCCEEC-------HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGG
T ss_pred             CHHHHHHhcCccccccCCCCcEEEC-------CcHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccc
Confidence            34555553    2455555566666       8888999999999999999999999999999999998653      36


Q ss_pred             ccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCC--CCC--ccceEEEEEEEEEcCCCCcc
Q psy7309         351 TTASVMTRGGSIVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRV--LGF--HPRELYECAFDIVTNTPGVL  423 (454)
Q Consensus       351 ~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~--~~g--~~rE~~Q~g~eiig~~~~~~  423 (454)
                      +||. .|.+|+.++|||+.|.+++|.++.+..   .+|+|+||+|+|||++.+  +.|  |.|||+|+|++++|.+  ..
T Consensus       316 ~my~-~d~~~~~~~LrP~~~~~~~~~~~~~~~syr~LPlr~~~~g~~fR~E~~g~~~GL~R~ReF~q~d~~~f~~~--~~  392 (642)
T 1qf6_A          316 AMFT-TSSENREYCIKPMNCPGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTE--EQ  392 (642)
T ss_dssp             GCEE-EEETTEEEEECSSSHHHHHHHHTTSCEEGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECG--GG
T ss_pred             ccee-eecCCceEEecCCCCHHHHHHHHhhhhhccccCeEEEEeccEEecCCCccccCCceeeeEEEccEEEEcCH--HH
Confidence            8999 999999999999999999999886421   479999999999999886  678  9999999999999964  46


Q ss_pred             cHHH---HHHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         424 TMGS---LRRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       424 ~d~e---~~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                      +++|   ++.++.++|+.+|+++|.+.++++
T Consensus       393 ~~~e~~~~i~~~~~i~~~lGl~~~~v~l~~~  423 (642)
T 1qf6_A          393 IRDEVNGCIRLVYDMYSTFGFEKIVVKLSTR  423 (642)
T ss_dssp             HHHHHHHHHHHHHHHHGGGTCCCCEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCceEEEEecC
Confidence            7887   599999999999998899999886

>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A*

Probab=99.73  E-value=7.6e-18  Score=173.50  Aligned_cols=141  Identities=9%  Similarity=-0.017  Sum_probs=121.8

Q ss_pred             chhhHHHHHHHHHHHHHH-HhcCCccccCCCcccccccccc------ccccEEEEcC--CCCeEeeCCCCCHHHHHHHHH
Q psy7309         309 SANFSLLESTGDKLRRIF-QLHGGAHFQTPLLTPLNSLTAT------SETTASVMTR--GGSIVTLPHDLRIPFARYLAQ  379 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f-~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~--~G~~~~Lr~d~T~p~aR~~a~  379 (454)
                      |..+.+++.|++.+++.+ +++||.+|.||+|++.+++..+      .++||.+.|.  +|+.++|||+.|.+++++++.
T Consensus        61 P~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~  140 (460)
T 3uh0_A           61 PNGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGK  140 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHh
Confidence            888889999999999999 9999999999999999987542      3689999987  589999999999999998875


Q ss_pred             cCC---CCceeeEeecCccccCCCC--CC--ccceEEEEEEEEEcCCCCcccHHH---HHHHHHHHH-HhCCCC------
Q psy7309         380 NGS---IVSMKRYCIDRVFRERRVL--GF--HPRELYECAFDIVTNTPGVLTMGS---LRRCLMGSF-RRFNYG------  442 (454)
Q Consensus       380 ~~~---~~~~k~~y~g~vfR~~~~~--~g--~~rE~~Q~g~eiig~~~~~~~d~e---~~~~~~~~l-~~~~~~------  442 (454)
                      ...   .+|+|+||+|+|||++.++  .|  |.|||+|.++++++.+  ..+++|   ++.++.+++ +.||+.      
T Consensus       141 ~~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~f~~~--e~~~~e~~~~i~~~~~~~~~~lGl~~~~~~~  218 (460)
T 3uh0_A          141 KDRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHIFCTP--SQVKSEIFNSLKLIDIVYNKIFPFVKGGSGA  218 (460)
T ss_dssp             SCCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEEEECG--GGHHHHHHHHHHHHHHHHTTTSCCC-----C
T ss_pred             ccccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEEEcCH--HHHHHHHHHHHHHHHHHHHHHcCCCCccccc
Confidence            321   4799999999999999875  78  9999999999999875  367777   889999999 999998      


Q ss_pred             --CcEEEcCcc
Q psy7309         443 --NISFAPHPR  451 (454)
Q Consensus       443 --~~~i~i~~~  451 (454)
                        ++.+.+++|
T Consensus       219 ~~~~~~~l~t~  229 (460)
T 3uh0_A          219 ESNYFINFSTR  229 (460)
T ss_dssp             CSSCEEEEECC
T ss_pred             ccceEEEEccC
Confidence              899998876

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.72  E-value=6.4e-19  Score=171.07  Aligned_cols=45  Identities=13%  Similarity=0.186  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEeccc
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFG   47 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFG   47 (454)
                      ++.+++.||+.||+|||++||+||||||+|||++.+|.+||+++|
T Consensus       130 ~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~  174 (286)
T 3uqc_A          130 GAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA  174 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc
Confidence            578899999999999999999999999999999999999998554

>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A*

Probab=99.72  E-value=1.7e-17  Score=172.80  Aligned_cols=162  Identities=15%  Similarity=0.125  Sum_probs=135.8

Q ss_pred             hhHHHHHHHH--hC--CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-------
Q psy7309         280 KGYKYLVAAC--FN--QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-------  348 (454)
Q Consensus       280 ~~~~~~~~~~--f~--q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-------  348 (454)
                      ..|.+++...  +.  ++..++.++.       |..+.+++.|++.++++|++ ||.+|.||+|++.+++...       
T Consensus        42 ~~~~~l~~~~glid~~~~~~G~~~~~-------P~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f  113 (501)
T 1nj1_A           42 EWFHNILEEAEIIDQRYPVKGMHVWM-------PHGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGF  113 (501)
T ss_dssp             HHHHHHHHHTTCEECCCSSTTCCEEC-------HHHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHT
T ss_pred             HhHHHHHHHCCCccccCCCCceEEEC-------ccHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccC
Confidence            5566666542  22  3444455555       88888999999999999999 9999999999999998652       


Q ss_pred             ccccEEEEcCC----CCeEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCC-CCC--ccceEE-EEEEEEEc
Q psy7309         349 SETTASVMTRG----GSIVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRV-LGF--HPRELY-ECAFDIVT  417 (454)
Q Consensus       349 ~~~~~~~~d~~----G~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~-~~g--~~rE~~-Q~g~eiig  417 (454)
                      .+++|.+.|.+    |+.++|||+.|.|++|+++.+..   .+|+|+||+|+|||++.+ ++|  |.|||+ |+++++++
T Consensus       114 ~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~  193 (501)
T 1nj1_A          114 EDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIH  193 (501)
T ss_dssp             TTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEE
T ss_pred             CcceEEEecCCCcccCCeeEEccCCCHHHHHHHHhhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEE
Confidence            36899999876    78999999999999999986522   579999999999999988 889  999999 99999999


Q ss_pred             CCCCcccHHHH---HHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         418 NTPGVLTMGSL---RRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       418 ~~~~~~~d~e~---~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                      .+ ...+++|+   +.++.++|+.||+. |.+.++++
T Consensus       194 ~~-~e~a~~e~~~~l~~~~~i~~~Lgl~-~~~~~~~~  228 (501)
T 1nj1_A          194 AT-ASEAEEQVERAVEIYKEFFNSLGIP-YLITRRPP  228 (501)
T ss_dssp             SS-HHHHHHHHHHHHHHHHHHHHHHTCC-CEEEECCT
T ss_pred             CC-HHHHHHHHHHHHHHHHHHHHHCCCe-EEEEeCCc
Confidence            87 77888885   89999999999996 88877653

>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803}

Probab=99.61  E-value=1.4e-15  Score=157.59  Aligned_cols=156  Identities=12%  Similarity=0.053  Sum_probs=128.1

Q ss_pred             ChhHHHHHHH--HhC--CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------
Q psy7309         279 SKGYKYLVAA--CFN--QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------  348 (454)
Q Consensus       279 s~~~~~~~~~--~f~--q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------  348 (454)
                      +..|++++..  +..  ++.++..+++       |..+.+++.|++.+++.|+++||.+|.||.|++.+++...      
T Consensus        25 ~~wy~~l~~~aglid~r~~~~G~~~~l-------P~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~   97 (518)
T 3ial_A           25 ADWFDAIMDAAELVDRRYPVKGCVVFR-------PYGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKG   97 (518)
T ss_dssp             HHHHHHHHHHTTCEETTSSSTTCCEEC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHH
T ss_pred             cHHHHHHHHHCCCcccCCCCCCeEEEC-------ccHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCccc
Confidence            3455555543  222  4555555555       8888999999999999999999999999999999988532      


Q ss_pred             -ccccEEEEcCC----CCeEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEc
Q psy7309         349 -SETTASVMTRG----GSIVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVT  417 (454)
Q Consensus       349 -~~~~~~~~d~~----G~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig  417 (454)
                       .+++|.+.|.+    |+.++|||..+.+++++++....   .+|+|+|++|+|||++ +++.|  |.|||+|.+.+++|
T Consensus        98 f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~  177 (518)
T 3ial_A           98 FEAECFWVEKGGLQPLEERLALRPTSETAIYSMFSKWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCH  177 (518)
T ss_dssp             HGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEE
T ss_pred             ccccEEEEecCCCcccCcceeECCCCcHHHHHHHHhhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEE
Confidence             37899999876    78999999999999999876421   5799999999999998 67789  99999999999998


Q ss_pred             CCCCcccHHHHHHH---HHHHH-HhCCCC
Q psy7309         418 NTPGVLTMGSLRRC---LMGSF-RRFNYG  442 (454)
Q Consensus       418 ~~~~~~~d~e~~~~---~~~~l-~~~~~~  442 (454)
                      .+ ...+++|+..+   ..+++ +.||+.
T Consensus       178 ~~-~e~a~~e~~~~l~~~~~i~~~~LGlp  205 (518)
T 3ial_A          178 AT-AEDAVSQLSDYWKVIDTIFSDELCFK  205 (518)
T ss_dssp             SS-HHHHHHHHHHHHHHHHHHHTTTTCCC
T ss_pred             CC-HHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            77 77788887665   58899 899984

>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A

Probab=99.57  E-value=5e-15  Score=143.32  Aligned_cols=133  Identities=11%  Similarity=0.014  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCccccccccccc---c-ccEEEEcCCCCeEeeCCCCCHHHHHHHHHc--CCCCcee
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATS---E-TTASVMTRGGSIVTLPHDLRIPFARYLAQN--GSIVSMK  387 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~---~-~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~--~~~~~~k  387 (454)
                      ..+.+++.++++|..+||.+|.||.|++.+.+....   + +++.+.++.++.++|||.++....+.++.+  ....|+|
T Consensus        72 ~~~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~~~~~~~Plr  151 (288)
T 3dsq_A           72 ALLELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWRELERLWDKPIR  151 (288)
T ss_dssp             HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHHTTTSCSCEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHHHhCCCCCEE
Confidence            368899999999999999999999999988764321   1 455555554466899999999888765543  1258999


Q ss_pred             eEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEE
Q psy7309         388 RYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~  447 (454)
                      +|++|+|||++..+.+|.+||+|+++.++|.. ....++|++.++.++|+.+|+++|.+.
T Consensus       152 lfeiG~vFR~E~~~~~r~~EF~qle~~i~g~~-~~~~f~elkg~le~ll~~LGl~~~~~~  210 (288)
T 3dsq_A          152 IFEIGTCYRKESQGAQHLNEFTMLNLTELGTP-LEERHQRLEDMARWVLEAAGIREFELV  210 (288)
T ss_dssp             EEEEEEEECSCCSSSCCCSEEEEEEEEEETCC-GGGHHHHHHHHHHHHHHHHTCCCCEEE
T ss_pred             EEEEeeEEecCCCCCCcCccEEEEEEEEEcCC-chhhHHHHHHHHHHHHHHcCCCCcEEe
Confidence            99999999999888899999999999999986 667899999999999999999777764

>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens}

Probab=99.56  E-value=1.7e-14  Score=149.90  Aligned_cols=159  Identities=11%  Similarity=0.030  Sum_probs=126.9

Q ss_pred             ChhHHHHHHHH--hCC-CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc-c------
Q psy7309         279 SKGYKYLVAAC--FNQ-KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA-T------  348 (454)
Q Consensus       279 s~~~~~~~~~~--f~q-~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~-~------  348 (454)
                      +..|++++...  .+. +.++..++.       |..+.+++.|++.+.+.++++||.+|.||.|++.+++.. +      
T Consensus        32 ~~wy~~l~~~~~lid~~~~~G~~~~l-------P~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f  104 (519)
T 4hvc_A           32 ADWYSQVITKSEMIEYHDISGCYILR-------PWAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADF  104 (519)
T ss_dssp             HHHHHHHHHHTTCEEECSSTTCEEEC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGG
T ss_pred             hHHHHHHHHHCCCeEecCCCCeEEEC-------ccHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccc
Confidence            34566666542  222 344444444       888899999999999999999999999999999999864 2      


Q ss_pred             ccccEEEEcCCCC----eEeeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcC
Q psy7309         349 SETTASVMTRGGS----IVTLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTN  418 (454)
Q Consensus       349 ~~~~~~~~d~~G~----~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~  418 (454)
                      .+++|.+.|.+|+    .++|||..+.+++++++....   .+|+|+|++|+|||++ +++.|  |.|||+|.+.++++.
T Consensus       105 ~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~  184 (519)
T 4hvc_A          105 APEVAWVTRSGKTELAEPIAIRPTSETVMYPAYAKWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFA  184 (519)
T ss_dssp             GGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHHHHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEES
T ss_pred             cccceEEeccCCcccccceeeCCCCcHHHHHHHHhhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEec
Confidence            2689999988754    699999999999999886422   4799999999999998 67788  999999999999887


Q ss_pred             CCCcccHHHHH---HHHHHHHHhC-CCCCcEE
Q psy7309         419 TPGVLTMGSLR---RCLMGSFRRF-NYGNISF  446 (454)
Q Consensus       419 ~~~~~~d~e~~---~~~~~~l~~~-~~~~~~i  446 (454)
                      . ...+++|+.   .+..++++.+ |+ .+.+
T Consensus       185 ~-~e~a~~E~~~~l~~~~~i~~~ll~l-p~~~  214 (519)
T 4hvc_A          185 T-MEEAAEEVLQILDLYAQVYEELLAI-PVVK  214 (519)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHTTSCC-CCEE
T ss_pred             C-HHHHHHHHHHHHHHHHHHHHHhcCC-ccee
Confidence            7 778888854   5677888886 76 3433

>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A

Probab=99.55  E-value=7.3e-15  Score=157.80  Aligned_cols=146  Identities=13%  Similarity=0.039  Sum_probs=118.7

Q ss_pred             CCccccccccccCCchhhHHHHHHHHHHHHHHH-hcCCccccCCCccccccccccc---------------cccEEEEcC
Q psy7309         295 SPADDITYDISLSRSANFSLLESTGDKLRRIFQ-LHGGAHFQTPLLTPLNSLTATS---------------ETTASVMTR  358 (454)
Q Consensus       295 ~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~-~~G~~~i~tp~le~~~~~~~~~---------------~~~~~~~d~  358 (454)
                      .++-||.       |..+.++++|++.+++.|. ..||.+|.||+|+|.+++..++               +++|++ |.
T Consensus        91 ~G~~d~l-------P~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~~~lwk~SGH~~~f~d~m~~~~~~~e~yr~-D~  162 (693)
T 2zt5_A           91 SGLYDFG-------PVGCALKNNIIQTWRQHFIQEEQILEIDCTMLTPEPVLKTSGHVDKFADFMVKDVKNGECFRA-DH  162 (693)
T ss_dssp             TTCEEEC-------HHHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEEHHHHHHHTHHHHCEEEEEEBSSSCCEEEH-HH
T ss_pred             CCeEEEC-------CChHHHHHHHHHHHHHHHHHhcCcEEEEeCCcccHHHHhhcCCcccccccceeeccCCceeec-cH
Confidence            4566666       8888899999999999998 5699999999999999876531               245544 32


Q ss_pred             -------------------------------------------------------------------------CCCeEee
Q psy7309         359 -------------------------------------------------------------------------GGSIVTL  365 (454)
Q Consensus       359 -------------------------------------------------------------------------~G~~~~L  365 (454)
                                                                                               +|+.+.|
T Consensus       163 l~e~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~eel~~li~~~~~~~P~~g~~~~~~~~fnlmf~t~igp~~~~~~~L  242 (693)
T 2zt5_A          163 LLKAHLQKLMSDKKCSVEKKSEMESVLAQLDNYGQQELADLFVNYNVKSPITGNDLSPPVSFNLMFKTFIGPGGNMPGYL  242 (693)
T ss_dssp             HHHHHHHHHHHSTTCCHHHHHHHHHHHTTTTTCCHHHHHHHHHHTTCBCSSSCCBBCCCEEEECCCEEECSSSSSSEEEE
T ss_pred             hHHHHHHHhhccccccHHHHHHHHHHHhhccCCCHHHHHHHHHHcCCCCCCCCCCCCCcchhheeeeccccCCCCcceee
Confidence                                                                                     5789999


Q ss_pred             CCCCCHHH----HHHHHHcCCCCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcCCCCcc-------cHHH----
Q psy7309         366 PHDLRIPF----ARYLAQNGSIVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTNTPGVL-------TMGS----  427 (454)
Q Consensus       366 r~d~T~p~----aR~~a~~~~~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~~~~~~-------~d~e----  427 (454)
                      |||.|.++    +|.+..++...|+|+|++|++||++ +|+.|  |.|||+|+++++++.+....       +|+|    
T Consensus       243 RPEtaqg~f~~f~r~~~~~~~~LP~~~aqiG~~fRnEisPr~GLlR~REF~q~d~e~F~~p~~~~~~~y~~v~da~~~~~  322 (693)
T 2zt5_A          243 RPETAQGIFLNFKRLLEFNQGKLPFAAAQIGNSFRNEISPRSGLIRVREFTMAEIEHFVDPSEKDHPKFQNVADLHLYLY  322 (693)
T ss_dssp             CSCSHHHHHTTHHHHHHHTTTCSCEEEEEEEEEECCCSSCCSGGGSCSEEEEEEEEEEECTTCCCCTTGGGTTTCEEEEE
T ss_pred             ccccchHHHHHHHHHHHHhCcCCCEEEEeecceecCCCCCCCCCccceeeEEccceEEeCcchhcchhHHHHHHHHHhhh
Confidence            99999988    9988776447999999999999998 89999  99999999999999763321       2322    


Q ss_pred             --------------------------------HHHHHHHHHHhCCCCCcEEEc
Q psy7309         428 --------------------------------LRRCLMGSFRRFNYGNISFAP  448 (454)
Q Consensus       428 --------------------------------~~~~~~~~l~~~~~~~~~i~i  448 (454)
                                                      .|.++.+++..+|++...+++
T Consensus       323 ~~~~~~~~~~~~~~~~~ea~~~g~i~~e~~~~~i~~~~~f~~~lGi~~~~~~~  375 (693)
T 2zt5_A          323 SAKAQVSGQSARKMRLGDAVEQGVINNTVLGYFIGRIYLYLTKVGISPDKLRF  375 (693)
T ss_dssp             CHHHHHTTCCCEEEEHHHHHHHTSSCCHHHHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred             hhhhhccccccccchhhhhhhhcccchHHHHHHHHHHHHHHHHcCcCccEEEE
Confidence                                            888999999999997655554

>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}

Probab=99.53  E-value=7.3e-15  Score=149.59  Aligned_cols=137  Identities=8%  Similarity=0.006  Sum_probs=113.9

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc--
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQN--  380 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~--  380 (454)
                      |....+++.|++.+.+.|.++||.+|.||.|++.+++..+      .+++|++.   |+.++|||+.|+|++++++..  
T Consensus       169 p~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~---~~~l~LrPt~e~~i~~~~~~~i~  245 (425)
T 2dq3_A          169 GWGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE---RDNLYLIPTAEVPLTNLYREEIL  245 (425)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT---TTCCEECSSTHHHHHGGGTTEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec---CCeEEEcCCCcHHHHHHHHhhcc
Confidence            7788899999999999999999999999999999987542      36788874   578999999999999998753  


Q ss_pred             -CCCCceeeEeecCccccCCCCCC-------ccceEEEEEEEEEcCCC-CcccHHHHHHHHHHHHHhCCCCCcE-EEcC
Q psy7309         381 -GSIVSMKRYCIDRVFRERRVLGF-------HPRELYECAFDIVTNTP-GVLTMGSLRRCLMGSFRRFNYGNIS-FAPH  449 (454)
Q Consensus       381 -~~~~~~k~~y~g~vfR~~~~~~g-------~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~~~~l~~~~~~~~~-i~i~  449 (454)
                       ....|+|+||+|+|||++..+.|       |.|||.|.+..+++.+. +....+|++.++.++|+.||+. |. +.+.
T Consensus       246 s~~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~pe~s~~~~~e~i~~~~~il~~LGL~-~rvv~l~  323 (425)
T 2dq3_A          246 KEENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVHPDTSYDELEKLVKDAEEVLQLLGLP-YRVVELC  323 (425)
T ss_dssp             ETTTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred             ccccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECCHHHHHHHHHHHHHHHHHHHHHCCCc-eEEEEec
Confidence             11579999999999999875544       88999999999998762 1123489999999999999995 66 4443

>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A*

Probab=99.51  E-value=3.9e-14  Score=147.56  Aligned_cols=146  Identities=12%  Similarity=0.107  Sum_probs=118.2

Q ss_pred             CCccccccccccCCchhhHHHHHHHHHHHHHHH--hcCCccccCCCccccccccccc------cccEE------------
Q psy7309         295 SPADDITYDISLSRSANFSLLESTGDKLRRIFQ--LHGGAHFQTPLLTPLNSLTATS------ETTAS------------  354 (454)
Q Consensus       295 ~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~--~~G~~~i~tp~le~~~~~~~~~------~~~~~------------  354 (454)
                      .++.++.       |....+++.|++.+++.|.  ++||.+|.||.|++.+++..++      +.+++            
T Consensus        29 ~G~~d~~-------P~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~l~~~SGh~~~f~d~m~~~~~~~~~~r~d~  101 (505)
T 1ati_A           29 QGVYDYG-------PLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNRITKKRYRLDH  101 (505)
T ss_dssp             TTCEEEC-------HHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETTHHHHTSHHHHCEEEEEEC-----------
T ss_pred             CCcceeC-------ccHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHHHHHhcCChhhcCccceeccccccccchhh
Confidence            4555555       7788899999999999999  9999999999999999875541      34444            


Q ss_pred             -------------------------E------E-----------------cCC-------------------------CC
Q psy7309         355 -------------------------V------M-----------------TRG-------------------------GS  361 (454)
Q Consensus       355 -------------------------~------~-----------------d~~-------------------------G~  361 (454)
                                               |      .                 +.+                         |+
T Consensus       102 l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~i~~p~~~~~~m~~~~~~cp~~~~~~~~~~~~~fnlmf~t~~gpt~ee~~  181 (505)
T 1ati_A          102 LLKEQPEEVLKRLYRAMEVEEENLHALVQAMMQAPERAGGAMTAAGVLDPASGEPGDWTPPRYFNMMFQDLRGPRGGRGL  181 (505)
T ss_dssp             ---------------------------------------------------------CCCCEEEECBEEEECSSCCCGGG
T ss_pred             hhhhhhhhhccccccccccHHHHHHHHHhhccccccccccccccccccCCccCccccccccchhhhhhhcccCCcccccc
Confidence                                     2      1                 111                         45


Q ss_pred             eEeeCCCCCHHH----HHHHHHcCCCCceeeEeecCccccC-CCCCC--ccceEEEEEEEEEcCCCCccc--HHHHHHHH
Q psy7309         362 IVTLPHDLRIPF----ARYLAQNGSIVSMKRYCIDRVFRER-RVLGF--HPRELYECAFDIVTNTPGVLT--MGSLRRCL  432 (454)
Q Consensus       362 ~~~Lr~d~T~p~----aR~~a~~~~~~~~k~~y~g~vfR~~-~~~~g--~~rE~~Q~g~eiig~~~~~~~--d~e~~~~~  432 (454)
                      .+.|||+.|.++    +|.+..+...+|+|+|++|++||++ +|+.|  |.|||+|.++++++.. ....  +++++.++
T Consensus       182 ~~~LRPE~t~~i~~~~~~~~~sy~r~LP~rl~qig~~FR~E~~pr~GL~R~REF~q~d~~~f~~~-e~~~~~~~~~i~~~  260 (505)
T 1ati_A          182 LAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRP-GEDEYWHRYWVEER  260 (505)
T ss_dssp             EEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECG-GGHHHHHHHHHHHH
T ss_pred             ceeecccchhHHHHHHHHHHHhcCCCCCEEEEEeeceeeCCCCCCCCCCcccceEEeeEEEEECH-HHHHHHHHHHHHHH
Confidence            789999999999    8887776227999999999999998 78889  9999999999999987 5444  88999999


Q ss_pred             HHHHHhCCCCCcEEEc
Q psy7309         433 MGSFRRFNYGNISFAP  448 (454)
Q Consensus       433 ~~~l~~~~~~~~~i~i  448 (454)
                      .++++.||+..+.+.+
T Consensus       261 ~~i~~~LGl~~~~v~~  276 (505)
T 1ati_A          261 LKWWQEMGLSRENLVP  276 (505)
T ss_dssp             HHHHHHTTCCGGGEEE
T ss_pred             HHHHHHcCCCeEEEEE
Confidence            9999999997655544

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.50  E-value=9e-16  Score=161.95  Aligned_cols=92  Identities=18%  Similarity=0.152  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCCC
Q psy7309           4 AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDTS   83 (454)
Q Consensus         4 i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (454)
                      ++.++.|++.||+|||++||+||||||+|||++.  ++||+|||+|+.........                  ......
T Consensus       433 ~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~------------------~~~~~~  492 (540)
T 3en9_A          433 NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKA------------------VDLIVF  492 (540)
T ss_dssp             CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHH------------------HHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccccc------------------cchhhh
Confidence            4579999999999999999999999999999998  99999999998543210000                  000001


Q ss_pred             CcCcccccceeccccccccccccccccCCccccch
Q psy7309          84 HTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSK  118 (454)
Q Consensus        84 ~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl  118 (454)
                      ....+||+.|||||++... ...|+..+  |+||.
T Consensus       493 ~~~~~GT~~y~APEv~~~~-~~~Y~~~~--d~ws~  524 (540)
T 3en9_A          493 KKAVLSTHHEKFDEIWERF-LEGYKSVY--DRWEI  524 (540)
T ss_dssp             HHHHHHHCGGGHHHHHHHH-HHHHHHHC--TTHHH
T ss_pred             hhhhcCCCCcCCHHHHHHH-HHHHHHHH--hHHHH
Confidence            2357899999999999721 25688888  99998

>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A*

Probab=99.43  E-value=1e-12  Score=127.63  Aligned_cols=125  Identities=18%  Similarity=0.192  Sum_probs=104.7

Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCccccccccc-----c---ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC--CC
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA-----T---SETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS--IV  384 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~-----~---~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~--~~  384 (454)
                      ++++++.++++|..+||.+|.||+|+..+.+..     .   .+.++.| |   +..+|||+++.++.+.++++.+  ..
T Consensus        79 ~~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~-~---~~~~LR~slsp~L~~~l~~n~~~~~~  154 (290)
T 3qtc_A           79 LGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRV-D---KNFCLRPMLTPNLYNYLRKLDRALPD  154 (290)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEE-T---TTEEECSCSHHHHHHHHHHHTTTSCS
T ss_pred             HHHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheee-C---CCeeEcccChHHHHHHHHHhhccCCC
Confidence            788999999999999999999999998876421     1   1245555 3   5799999999999999887532  57


Q ss_pred             ceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEE
Q psy7309         385 SMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       385 ~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~  447 (454)
                      |.|+|++|+|||.+....++++||+|++++++|..   ..+.|+..++.++|+.+|+ +|.+.
T Consensus       155 p~rlfeiG~vFR~E~~~~~~~~Ef~ql~~~~~g~~---~~f~elkg~le~ll~~lGl-~~~~~  213 (290)
T 3qtc_A          155 PIKIFEIGPCYRKESDGKEHLEEFTMLVFWQMGSG---CTRENLESIITDFLNHLGI-DFKIV  213 (290)
T ss_dssp             SEEEEEEEEEECCCSCSSSCCSEEEEEEEEEESTT---CCHHHHHHHHHHHHHHHTC-CCEEE
T ss_pred             CeEEEEEcCEEecCCCCCcCcchheEEEEEEEcCC---hHHHHHHHHHHHHHHHcCC-CcEEe
Confidence            89999999999998777789999999999999976   3578999999999999998 56653

>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A

Probab=99.35  E-value=5.7e-13  Score=135.38  Aligned_cols=133  Identities=7%  Similarity=-0.034  Sum_probs=109.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcC-
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNG-  381 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~-  381 (454)
                      |....+++.|++.+.+.+.++||.+|.||.|++.+++..+      .+++|.+.|   +.++|+|..++|++++++... 
T Consensus       163 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d---~~l~L~Pt~e~~~~~~~~~~~~  239 (421)
T 1ses_A          163 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE---TDLYLTGTAEVVLNALHSGEIL  239 (421)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBTT---SSEEECSSTHHHHHHTTTTCEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEcC---CeEEEeecCcHHHHHHhccccc
Confidence            6777899999999999999999999999999999987643      368998854   679999999999999877431 


Q ss_pred             --CCCceeeEeecCccccC-----CCCCC--ccceEEEEEEEEEcCCCCcccHH---HHHHHHHHHHHhCCCCCcE
Q psy7309         382 --SIVSMKRYCIDRVFRER-----RVLGF--HPRELYECAFDIVTNTPGVLTMG---SLRRCLMGSFRRFNYGNIS  445 (454)
Q Consensus       382 --~~~~~k~~y~g~vfR~~-----~~~~g--~~rE~~Q~g~eiig~~~~~~~d~---e~~~~~~~~l~~~~~~~~~  445 (454)
                        ...|+|+|++|+|||++     ++..|  |.|||.|....++..+....+++   |++.++.++|+.||+. |.
T Consensus       240 s~~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~~~~~~il~~LGL~-~r  314 (421)
T 1ses_A          240 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP-YR  314 (421)
T ss_dssp             EGGGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC-EE
T ss_pred             CchhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHHHHHHHHHHHCCCc-eE
Confidence              14799999999999998     56778  99999997666665430024454   8999999999999994 54

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=99.34  E-value=1.5e-12  Score=133.37  Aligned_cols=136  Identities=10%  Similarity=-0.030  Sum_probs=110.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccc------cccEEEEcCCCCeEeeCCCCCHHHHHHHHHc--
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATS------ETTASVMTRGGSIVTLPHDLRIPFARYLAQN--  380 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~------~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~--  380 (454)
                      |....+++.|++.+.+.+.++||.+|.||.|++.+++..++      +++|++.|   +.++|||..++|++++++..  
T Consensus       190 p~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~d---~~l~LrPt~e~~~~~~~~~~~~  266 (455)
T 2dq0_A          190 NEIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVED---EDLYLIPTAEHPLAGMHANEIL  266 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBTT---SSCEECSSTHHHHHHTTTTEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeecC---CcEEEcCcCcHHHHHHHHhCcc
Confidence            67778999999999999999999999999999999986542      57888754   67999999999999988753  


Q ss_pred             -CCCCceeeEeecCccccCCCCCC-------ccceEEEEEEEEEcCCCC-cccHHHHHHHHHHHHHhCCCCCcEEEc
Q psy7309         381 -GSIVSMKRYCIDRVFRERRVLGF-------HPRELYECAFDIVTNTPG-VLTMGSLRRCLMGSFRRFNYGNISFAP  448 (454)
Q Consensus       381 -~~~~~~k~~y~g~vfR~~~~~~g-------~~rE~~Q~g~eiig~~~~-~~~d~e~~~~~~~~l~~~~~~~~~i~i  448 (454)
                       ...+|+|+|++|+|||++.+++|       |.|||.|...-++..+.. .....|++.++.++|+.||+. |.+..
T Consensus       267 s~~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~~f~~pe~s~~~~~e~l~~~~~il~~LGL~-yrv~~  342 (455)
T 2dq0_A          267 DGKDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQFVYSRPEESWEWHEKIIRNAEELFQELEIP-YRVVN  342 (455)
T ss_dssp             ETTTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEEEEECTTTHHHHHHHHHHHHHHHHHHTTCC-EEEEE
T ss_pred             CchhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEEEecCHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEE
Confidence             12589999999999999987666       899999976666665411 122338999999999999994 65544

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.34  E-value=2.5e-13  Score=131.48  Aligned_cols=48  Identities=27%  Similarity=0.446  Sum_probs=45.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      +++..++.|++.||.|||++||+||||||+|||++ ++.+||+|||+|+
T Consensus       193 ~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~  240 (282)
T 1zar_A          193 ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSV  240 (282)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCE
T ss_pred             hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCe
Confidence            35678999999999999999999999999999999 9999999999986

>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*

Probab=99.22  E-value=6.3e-11  Score=114.93  Aligned_cols=122  Identities=14%  Similarity=0.125  Sum_probs=94.3

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccc-cccccc-c---cccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPL-NSLTAT-S---ETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSI  383 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~-~~~~~~-~---~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~  383 (454)
                      ...+.+|.+|.+.++++|..+||.+|+||+|++. +.+... .   .++|.+. -.|+.+.||..-.....+.++  +  
T Consensus        12 ~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~a~~f~~~-~~~~~~~L~~Spe~~~~~l~~--~--   86 (294)
T 1nnh_A           12 SPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVE-IYGVKMRLTHSMILHKQLAIA--M--   86 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEE-ETTEEEEECSCSHHHHHHHHH--T--
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCcceeEEEE-cCCCCEEeccChHHHHHHHhh--c--
Confidence            3566789999999999999999999999999998 655433 1   4566652 345678888554444444443  2  


Q ss_pred             CceeeEeecCccccCCCCC--Cccc-eEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Q psy7309         384 VSMKRYCIDRVFRERRVLG--FHPR-ELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFN  440 (454)
Q Consensus       384 ~~~k~~y~g~vfR~~~~~~--g~~r-E~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~  440 (454)
                      .+.|+|++|+|||+++||.  +|.+ ||+|+++|++|.+     ++|++.++.+.++.++
T Consensus        87 g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~-----~~~l~~~~e~l~~~l~  141 (294)
T 1nnh_A           87 GLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-----MEDIMRLIERLVYGLF  141 (294)
T ss_dssp             TCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC-----HHHHHHHHHHHHHHHH
T ss_pred             CccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC-----HHHHHHHHHHHHHHHH
Confidence            3679999999999998663  6777 9999999999974     7889988888887664

>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A

Probab=99.19  E-value=1.2e-11  Score=128.15  Aligned_cols=131  Identities=11%  Similarity=0.023  Sum_probs=108.6

Q ss_pred             chhhHHHHHHHHHHHH-HHHhcCCccccCCCcccccccccc------ccccEEEE-----c-------------------
Q psy7309         309 SANFSLLESTGDKLRR-IFQLHGGAHFQTPLLTPLNSLTAT------SETTASVM-----T-------------------  357 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~-~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~-----d-------------------  357 (454)
                      |....+++.|.+.+.+ ++.++||.+|.||.|++.+++..+      .+++|.+.     |                   
T Consensus       228 P~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~  307 (522)
T 2cja_A          228 PQSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPT  307 (522)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCH
T ss_pred             chHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhccccccc
Confidence            7777899999999996 689999999999999999987653      36899985     2                   


Q ss_pred             ------CCCCeEeeCCCCCHHHHHHHHHcC---CCCceeeEe-ecCccccCCCC--C--CccceEEEEEEEEEcCCCCcc
Q psy7309         358 ------RGGSIVTLPHDLRIPFARYLAQNG---SIVSMKRYC-IDRVFRERRVL--G--FHPRELYECAFDIVTNTPGVL  423 (454)
Q Consensus       358 ------~~G~~~~Lr~d~T~p~aR~~a~~~---~~~~~k~~y-~g~vfR~~~~~--~--g~~rE~~Q~g~eiig~~~~~~  423 (454)
                            .+++.++|||..+.|++++++...   ...|+|+|+ +|+|||++ ++  .  +|.|||.|.++++++.+ . .
T Consensus       308 ~~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~E-pgs~~GL~R~REF~q~E~~~F~~p-e-~  384 (522)
T 2cja_A          308 KLIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYE-SGGIHGIERVDEFHRIEIVWIGTK-E-E  384 (522)
T ss_dssp             HHHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCC-SSSCCCTTSCSEEEEEEEEEEEEH-H-H
T ss_pred             cccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCC-CCCCCCCeEeEEEEEeeEEEEeCh-H-H
Confidence                  147899999999999999877421   147999999 99999998 65  3  78999999999999965 2 2


Q ss_pred             cH---HHHH-HHHHHHHHhCCCC
Q psy7309         424 TM---GSLR-RCLMGSFRRFNYG  442 (454)
Q Consensus       424 ~d---~e~~-~~~~~~l~~~~~~  442 (454)
                      ++   .+++ ..+..+++.||+.
T Consensus       385 s~ee~ee~i~~~~~~~l~~LGLp  407 (522)
T 2cja_A          385 VLKCAEELHDRYMHIFNDILDIE  407 (522)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCC
Confidence            33   4567 7888899999997

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.06  E-value=7.7e-11  Score=112.22  Aligned_cols=48  Identities=21%  Similarity=0.354  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHHHHH-HcCCcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           3 RAWRLLREIIEGLSHIH-SQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH-~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      .+..++.|++.||.||| ++||+||||||+|||++.  .++|+|||+|...
T Consensus       171 ~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~~--~~~liDFG~a~~~  219 (258)
T 1zth_A          171 DVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID--KVYFIDMGQAVTL  219 (258)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence            57889999999999999 999999999999999997  8999999999743

>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A

Probab=99.06  E-value=4.9e-10  Score=114.20  Aligned_cols=115  Identities=11%  Similarity=0.013  Sum_probs=91.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeC--CCCCHHHHHHHHHcCCCCcee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLP--HDLRIPFARYLAQNGSIVSMK  387 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr--~d~T~p~aR~~a~~~~~~~~k  387 (454)
                      ..+.+|.+|.+.++++|..+||.+|+||.|+....-  ...++|.+ +..|+.+.||  |+++.-  + ++.    .+.|
T Consensus       133 ~~~~~rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e--~~~~~f~~-~~~~~~~~Lr~Spel~~~--~-~~~----g~~r  202 (434)
T 1x54_A          133 AIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVE--GGATLFKL-KYFDKYAYLSQSAQLYLE--A-AIF----GLEK  202 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSS--CGGGCCEE-EETTEEEEECSCSHHHHH--H-HHH----HHSE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCcEEEeecCC--CCceeEEE-eecCCcEEeccChHHHHH--H-Hhc----Cccc
Confidence            455689999999999999999999999999976321  23467777 6778899999  777643  2 332    2569


Q ss_pred             eEeecCccccCCCCCCccc-eEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhC
Q psy7309         388 RYCIDRVFRERRVLGFHPR-ELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRF  439 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~r-E~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~  439 (454)
                      +|++|+|||+++.+.+|.+ ||+|+++|.+|.+     +.|++.++-+.++.+
T Consensus       203 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-----~~dlm~~~e~ll~~l  250 (434)
T 1x54_A          203 VWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMD-----LWDIMKVEEELVSYM  250 (434)
T ss_dssp             EEEEEEEECCCCCCCSSCCSEEEEEEEEEETCC-----HHHHHHHHHHHHHHH
T ss_pred             eEEEecceecCCCCCcccccEEEEeeEEEcCCC-----HHHHHHHHHHHHHHH
Confidence            9999999999988777776 9999999999974     678888777766543

>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}

Probab=98.99  E-value=2e-09  Score=109.42  Aligned_cols=114  Identities=11%  Similarity=0.037  Sum_probs=89.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeC--CCCCHHHHHHHHHcCCCCcee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLP--HDLRIPFARYLAQNGSIVSMK  387 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr--~d~T~p~aR~~a~~~~~~~~k  387 (454)
                      ..+.+|.+|.+.+++.|..+||.+|+||+|+....-  ...++|.+ +..|+.+.||  |+++  ..| ++..    +-|
T Consensus       132 ~~~~~rs~i~~~ir~ff~~~gF~eV~TP~l~~~~~e--~~~~~f~~-~~~~~~~~L~~Spql~--~~~-~~~g----~~r  201 (429)
T 1wyd_A          132 AVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATE--GGAQLFPV-IYFGKEAFLAQSPQLY--KEL-MAGV----VER  201 (429)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSS--TTCCCCEE-EETTEEEEECSCCHHH--HHH-HHHH----HSE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCEEEECCEEEeeCCC--CCceeEEE-ecCCceEEecCCcHHH--HHH-HHhC----cCc
Confidence            445689999999999999999999999999976321  23467777 5678899999  6655  555 4432    569


Q ss_pred             eEeecCccccCCCCCCccc-eEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         388 RYCIDRVFRERRVLGFHPR-ELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~r-E~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      +|++|+|||++..+.+|.+ ||+|+++|..|.+     ..|++.++-+.++.
T Consensus       202 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-----~~dlm~~~e~ll~~  248 (429)
T 1wyd_A          202 VFEVAPAWRAEESDTPFHLAEFISMDVEMAFAD-----YNDVMQLLEKILHN  248 (429)
T ss_dssp             EEEEEEEECCCCCCSSSCCSEEEEEEEEEETCC-----HHHHHHHHHHHHHH
T ss_pred             eEEEcccccccCCccccccceeeEeeeeecCCC-----HHHHHHHHHHHHHH
Confidence            9999999999988777776 9999999999974     57777766665544

>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*

Probab=98.99  E-value=3.7e-10  Score=114.65  Aligned_cols=116  Identities=12%  Similarity=0.021  Sum_probs=62.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeC--CCCCHHHHHHHHHcCCCCcee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLP--HDLRIPFARYLAQNGSIVSMK  387 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr--~d~T~p~aR~~a~~~~~~~~k  387 (454)
                      ..+.+|.+|.+.++++|..+||.+|+||+|+....-  ...++|.+ +..|+.+.||  |+++.   +.++ .+   .-|
T Consensus       123 ~~~~~rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e--~~~~~f~~-~~~g~~~~L~~Spel~~---~~l~-~g---~~r  192 (422)
T 1n9w_A          123 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAE--GGSGLFGV-DYFEKRAYLAQSPQLYK---QIMV-GV---FER  192 (422)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCC-------------------------------CHHHH---HHHH-HH---HSE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEeCCC--CCceeEEE-eeCCCcEEeeeCHHHHH---HHHh-hC---CCc
Confidence            455689999999999999999999999999976321  22356766 5678889999  77763   3444 32   459


Q ss_pred             eEeecCccccCCCCCCccc-eEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhC
Q psy7309         388 RYCIDRVFRERRVLGFHPR-ELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRF  439 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~r-E~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~  439 (454)
                      +|++|+|||+++.+.+|.+ ||+|+++|..|.+ +   ..|++.++-+.++.+
T Consensus       193 vf~ig~~FR~E~~~~~RH~pEFtqle~e~~~~~-d---~~dlm~l~e~ll~~l  241 (422)
T 1n9w_A          193 VYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIA-D---EEDLMRLEEALLAEM  241 (422)
T ss_dssp             EEEEEEC-------------CCEEEEEEEESCS-S---HHHHHHHHHHHHHHH
T ss_pred             eeEEeCceECCCCCCCcccceeEEeeeeeeCCC-C---HHHHHHHHHHHHHHH
Confidence            9999999999988777777 9999999999984 2   577777766665443

>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens}

Probab=98.91  E-value=3.5e-09  Score=109.00  Aligned_cols=137  Identities=9%  Similarity=0.006  Sum_probs=105.2

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcC--------CCCeEeeCCCCCHHHH
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTR--------GGSIVTLPHDLRIPFA  374 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~--------~G~~~~Lr~d~T~p~a  374 (454)
                      |.-..+++.|++-+.+.+.++||.+|.||.|.+.+++...      .+++|++.|.        .++.++|+|--.+|++
T Consensus       198 p~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~  277 (522)
T 3vbb_A          198 GVLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIA  277 (522)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHH
Confidence            5556788899999999999999999999999999986542      3689999875        3678999999999999


Q ss_pred             HHHHHc---CCCCceeeEeecCccccCCCCCC-------ccceEEEEEEEEEcCCCC---cccHHHHHHHHHHHHHhCCC
Q psy7309         375 RYLAQN---GSIVSMKRYCIDRVFRERRVLGF-------HPRELYECAFDIVTNTPG---VLTMGSLRRCLMGSFRRFNY  441 (454)
Q Consensus       375 R~~a~~---~~~~~~k~~y~g~vfR~~~~~~g-------~~rE~~Q~g~eiig~~~~---~~~d~e~~~~~~~~l~~~~~  441 (454)
                      .++...   ...+|+|+|++|+|||++....|       |.|||.|...-++..+..   .....+++.++.++|+.||+
T Consensus       278 ~l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~f~~pe~e~s~~e~e~ml~~~e~il~~LGL  357 (522)
T 3vbb_A          278 ALHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFVYSSPHDNKSWEMFEEMITTAEEFYQSLGI  357 (522)
T ss_dssp             TTSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEEEeCCChHHHHHHHHHHHHHHHHHHHHcCC
Confidence            876532   12589999999999999875433       678999987777766522   22346788899999999999


Q ss_pred             CCcEE
Q psy7309         442 GNISF  446 (454)
Q Consensus       442 ~~~~i  446 (454)
                      . |.+
T Consensus       358 p-yrv  361 (522)
T 3vbb_A          358 P-YHI  361 (522)
T ss_dssp             C-EEE
T ss_pred             c-eEE
Confidence            4 544

>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*

Probab=98.88  E-value=1.2e-08  Score=105.33  Aligned_cols=101  Identities=15%  Similarity=0.116  Sum_probs=80.5

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeC--CCCCHHHHHHHHHcCCCCcee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLP--HDLRIPFARYLAQNGSIVSMK  387 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr--~d~T~p~aR~~a~~~~~~~~k  387 (454)
                      ..+.+|.+|...+++.|..+||.+|+||+|+..+.  ....++|.+- ..|+.+.||  |++-  .-+.++.    ..-|
T Consensus       176 ~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~--~~ga~~f~~~-~~~~~~~L~~Spql~--~k~l~~~----g~~r  246 (487)
T 1eov_A          176 AIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPS--EGGSSVFEVT-YFKGKAYLAQSPQFN--KQQLIVA----DFER  246 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS--SSSSCCCEEE-ETTEEEEECSCTHHH--HHHHHHT----TCCE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecC--CCCcccceec-cCCccEEcccChHHH--HHHHHhc----CCCc
Confidence            45568999999999999999999999999998752  2234677773 478899999  7773  3444442    3459


Q ss_pred             eEeecCccccCCCCCCccc-eEEEEEEEE-EcCC
Q psy7309         388 RYCIDRVFRERRVLGFHPR-ELYECAFDI-VTNT  419 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~r-E~~Q~g~ei-ig~~  419 (454)
                      +|++|+|||+++.+.+|.+ ||+|+++|+ +|.+
T Consensus       247 vy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~  280 (487)
T 1eov_A          247 VYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEH  280 (487)
T ss_dssp             EEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSC
T ss_pred             eEEEeccEecCCCCCCccchhhhhhhhhhhhhcC
Confidence            9999999999988778887 999999998 6754

>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}

Probab=98.87  E-value=3e-09  Score=109.72  Aligned_cols=137  Identities=9%  Similarity=0.005  Sum_probs=110.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------cc-ccEEEEcCCCCeEeeCCCCCHHHHHHHHHc-
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SE-TTASVMTRGGSIVTLPHDLRIPFARYLAQN-  380 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~-~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~-  380 (454)
                      |.-..+.+.|++-+.+.+.++||.+|.||.|.+.+++...      .+ ++|++.|.+|+.++|+|--.+|++.+++.. 
T Consensus       216 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i  295 (501)
T 1wle_A          216 GAGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHS  295 (501)
T ss_dssp             THHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEE
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhcc
Confidence            5666789999999999999999999999999999986542      24 899998777889999999999999887642 


Q ss_pred             --CCCCceeeEeecCccccCCC----CCC--ccceEEEEEEEEEcCC---CCcccHHHHHHHHHHHHHhCCCCCcEE
Q psy7309         381 --GSIVSMKRYCIDRVFRERRV----LGF--HPRELYECAFDIVTNT---PGVLTMGSLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       381 --~~~~~~k~~y~g~vfR~~~~----~~g--~~rE~~Q~g~eiig~~---~~~~~d~e~~~~~~~~l~~~~~~~~~i  446 (454)
                        ...+|+|+|++|+|||++..    ..|  |.|||.|...-++..+   .+.....+++.++.++|+.||+. |.+
T Consensus       296 ~s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~~~~il~~LgLp-yrv  371 (501)
T 1wle_A          296 VAFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSLQMEILTELGLH-FRV  371 (501)
T ss_dssp             EEGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHHHHHHHHHTTCC-EEE
T ss_pred             CCcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHCCCc-EEE
Confidence              11589999999999999754    122  5589999888888765   12345667889999999999994 664

>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*

Probab=98.76  E-value=6.1e-08  Score=100.11  Aligned_cols=118  Identities=14%  Similarity=0.149  Sum_probs=90.1

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEE-cCCCCeEeeCCCCCHHHHHHHHHcCCCCceee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM-TRGGSIVTLPHDLRIPFARYLAQNGSIVSMKR  388 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~-d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~  388 (454)
                      ..+.+|..|...+++.|..+||.+|+||+|++...  ....++|.+- |..|+.+.||----+-.-|.++    ...-|+
T Consensus       172 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~--Ga~a~~F~~~~~~~~~~~yLr~SpqLylk~l~v----~G~~rV  245 (493)
T 3a74_A          172 KTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAG--GAAARPFITHHNALDMTLYMRIAIELHLKRLIV----GGLEKV  245 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC--SSSSCCCEEEETTTTEEEEECSCSHHHHHHHHH----TTCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCC--CCcccceEecccCCCceeEEecCHHHHHHHHhh----cccCce
Confidence            55668999999999999999999999999996532  1124678775 7788999999322223333333    234699


Q ss_pred             EeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         389 YCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       389 ~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      |+||+|||.+.....|..||+|+++|..+.+     ..+++.++-+.+..
T Consensus       246 yeig~~FR~E~~~~rH~pEFT~lE~e~af~d-----~~dlm~l~E~ll~~  290 (493)
T 3a74_A          246 YEIGRVFRNEGISTRHNPEFTMLELYEAYAD-----FRDIMKLTENLIAH  290 (493)
T ss_dssp             EEEEEEECCCCCBTTBCSEEEEEEEEEETCC-----HHHHHHHHHHHHHH
T ss_pred             EEECccccCCCCCcccCCceeEEEEEecCCC-----HHHHHHHHHHHHHH
Confidence            9999999999888899999999999999865     56677666665544

>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A

Probab=98.72  E-value=2.7e-08  Score=101.72  Aligned_cols=136  Identities=11%  Similarity=0.068  Sum_probs=106.4

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc--
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQN--  380 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~--  380 (454)
                      |.-..+++.+++-+.+...++||.+|.||.|.+.+++...      .+++|++.|. ++.++|+|-...|++.+++..  
T Consensus       182 p~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~-~~~~~LipTaE~pl~~l~~~ei~  260 (485)
T 3qne_A          182 NYGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDG-EDEKYLIATSEQPISAYHAGEWF  260 (485)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEET-TEEEEECSSTHHHHHHHTTTCEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCC-CCeEEEeccccHHHHHHHhcccc
Confidence            6666788999999999999999999999999999987543      2689999875 678999999999999886632  


Q ss_pred             C---CCCceeeEeecCccccCCCCCC-------ccceEEEEEEEEEcCCC-CcccHHHHHHHHHHHHHhCCCCCcEE
Q psy7309         381 G---SIVSMKRYCIDRVFRERRVLGF-------HPRELYECAFDIVTNTP-GVLTMGSLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       381 ~---~~~~~k~~y~g~vfR~~~~~~g-------~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~~~~l~~~~~~~~~i  446 (454)
                      .   ..+|+|+|.+++|||++..+.|       |.|||.|...-++..+. +...-.+++.++.++|+.||+. |.+
T Consensus       261 ~S~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~f~~pe~s~~e~e~ml~~~e~il~~LgLp-yrv  336 (485)
T 3qne_A          261 ESPAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFVLTEPEKSWEEFDRMIGCSEEFYQSLGLP-YRV  336 (485)
T ss_dssp             SSHHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCC-EEE
T ss_pred             ccchhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEEEeCHHHHHHHHHHHHHHHHHHHHHCCCc-EEE
Confidence            1   1469999999999999764433       67899988777776541 1223356888899999999994 543

>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*

Probab=98.71  E-value=5e-08  Score=99.79  Aligned_cols=136  Identities=11%  Similarity=0.029  Sum_probs=107.7

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc--
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQN--  380 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~--  380 (454)
                      |.-..+.+.|++-+++...++||.+|.||.|.+.+++...      .+++|++.|. ++.++|+|---.|++-++...  
T Consensus       205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~-~~~~~L~PTaE~~l~~l~~~~i~  283 (484)
T 3lss_A          205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGD-GDKKYLIATSEMPIAAYHRGRWF  283 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESS-SSCEEECSSTHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecC-CcceEEeccCcHHHHHHHhcccc
Confidence            4555688899999999999999999999999999987543      2689999764 778999999999998775531  


Q ss_pred             -CCCCceeeEeecCccccCCCCCC-------ccceEEEEEEEEEcCCCC---cccHHHHHHHHHHHHHhCCCCCcEE
Q psy7309         381 -GSIVSMKRYCIDRVFRERRVLGF-------HPRELYECAFDIVTNTPG---VLTMGSLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       381 -~~~~~~k~~y~g~vfR~~~~~~g-------~~rE~~Q~g~eiig~~~~---~~~d~e~~~~~~~~l~~~~~~~~~i  446 (454)
                       ...+|+|+|.+|+|||++....|       |.|||.|...-++..+..   ...-.+++.++.++|+.||+. |.+
T Consensus       284 sy~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~f~~pe~~~s~~e~e~~~~~~e~il~~LGLp-yrv  359 (484)
T 3lss_A          284 TELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFVVCSPRQEESWRHLEDMITTSEEFNKSLGLP-YRV  359 (484)
T ss_dssp             SCCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEEEECSSTTHHHHHHHHHHHHHHHHHHHHTCC-EEE
T ss_pred             chhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHcCCc-EEE
Confidence             22589999999999999763334       678999988888876532   123456788899999999994 554

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.64  E-value=1.3e-08  Score=102.08  Aligned_cols=49  Identities=24%  Similarity=0.326  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCC----------eEEecccchh
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDH----------VKIGDFGLAT   50 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~----------vKL~DFGla~   50 (454)
                      +.+..++.||+.||.+||++|||||||||.|||++.+|.          +.|+||+-+.
T Consensus       205 ~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V  263 (397)
T 4gyi_A          205 PDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMV  263 (397)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcc
Confidence            356789999999999999999999999999999988763          8899999775

>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A

Probab=98.57  E-value=4.4e-07  Score=93.91  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=88.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEE-cCCCCeEeeCCCCCHHHHHHHHHcCCCCceee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM-TRGGSIVTLPHDLRIPFARYLAQNGSIVSMKR  388 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~-d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~  388 (454)
                      ..+.+|.+|...+++.|..+||.+|+||+|.+...  ....+.|.+- +.-|..+.||----+-.-|.++.    ..-|+
T Consensus       181 ~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~--Ga~ar~F~t~~~~~~~~~yL~~SpqLylk~L~v~----G~~rV  254 (504)
T 1e1o_A          181 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPG--GASARPFITHHNALDLDMYLRIAPELYLKRLVVG----GFERV  254 (504)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCC--SSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHH----TCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCC--CCcccceEeccCCCCceEEeccCHHHHHHHHhhc----CCCcE
Confidence            55668999999999999999999999999986521  1123677664 66788899994433444444443    23499


Q ss_pred             EeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         389 YCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       389 ~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      |+||+|||.+.....|..||+|+++|..+.+     ..+++.++-+.+..
T Consensus       255 yeIg~~FR~E~~~~rH~pEFt~lE~e~af~d-----~~dlm~l~E~li~~  299 (504)
T 1e1o_A          255 FEINRNFRNEGISVRHNPEFTMMELYMAYAD-----YHDLIELTESLFRT  299 (504)
T ss_dssp             EEEEEEECCCCCCC-CCSEEEEEEEEEESCC-----HHHHHHHHHHHHHH
T ss_pred             EEEcccccCCCCCccccCceeeeeeeecCCC-----HHHHHHHHHHHHHH
Confidence            9999999999888899999999999999864     55666666555543

>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A

Probab=98.52  E-value=2.3e-07  Score=96.68  Aligned_cols=134  Identities=7%  Similarity=-0.041  Sum_probs=105.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc--
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQN--  380 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~--  380 (454)
                      |.-..+.+.|++-+++.+.++||.+|.||.|.+.+++...      .+++|++.|   +.++|+|---.|++-++...  
T Consensus       272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~~---~~~~L~PT~E~~~~~l~~~~i~  348 (536)
T 3err_A          272 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIAE---TDLYLTGTAEVVLNALHSGEIL  348 (536)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEETT---TTEEECSSTHHHHHHHTTTCEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEecC---CCEEEccCCcHHHHHHHhcccc
Confidence            4556688999999999999999999999999999986542      368999865   57999999999998775532  


Q ss_pred             -CCCCceeeEeecCccccCCCCCC-------ccceEEEEEEEEEcCCC---CcccHHHHHHHHHHHHHhCCCCCcEE
Q psy7309         381 -GSIVSMKRYCIDRVFRERRVLGF-------HPRELYECAFDIVTNTP---GVLTMGSLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       381 -~~~~~~k~~y~g~vfR~~~~~~g-------~~rE~~Q~g~eiig~~~---~~~~d~e~~~~~~~~l~~~~~~~~~i  446 (454)
                       ...+|+|+|.+|++||++....|       |.|||.|...-++..+.   +...-.+++.++.++|+.||+. |.+
T Consensus       349 s~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~~~~i~~~LgLp-yrv  424 (536)
T 3err_A          349 PYEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP-YRL  424 (536)
T ss_dssp             EGGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC-EEE
T ss_pred             cHhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHHHHHHHHHcCCc-EEE
Confidence             11589999999999999763333       67899999999888762   1223345778899999999994 544

>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*

Probab=98.50  E-value=8.5e-07  Score=87.50  Aligned_cols=119  Identities=15%  Similarity=0.107  Sum_probs=85.1

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEE--c---CCCCeEeeCCCCCHHHHHHHHHcCCC
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM--T---RGGSIVTLPHDLRIPFARYLAQNGSI  383 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~--d---~~G~~~~Lr~d~T~p~aR~~a~~~~~  383 (454)
                      -..+.+|.+|...+++.|..+||.+|+||+|...+.-.. ..++|++-  +   ..+...-|+----+-.-|.++...  
T Consensus        33 ~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a-~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~--  109 (345)
T 3a5y_A           33 IPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDI-HLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGC--  109 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCT-TCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCC-ccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCC--
Confidence            466779999999999999999999999999997653311 23455542  1   122456677444444556666332  


Q ss_pred             CceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHH
Q psy7309         384 VSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFR  437 (454)
Q Consensus       384 ~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~  437 (454)
                        -|+|+||+|||.+.....|..||+|+.+|..+.+     ..+++.++-+.++
T Consensus       110 --~rvyqIg~~FR~E~~~~rH~pEFt~lE~e~af~d-----~~d~m~~~E~li~  156 (345)
T 3a5y_A          110 --GPVFQLCRSFRNEEMGRYHNPEFTMLEWYRPHYD-----MYRLMNEVDDLLQ  156 (345)
T ss_dssp             --CSEEEEEEEECCCCCBTTBCSEEEEEEEEEETCC-----HHHHHHHHHHHHH
T ss_pred             --CcEEEEEcceeCCCCcccccchhheeeeeeeCCC-----HHHHHHHHHHHHH
Confidence              3999999999998887888999999999999864     3445555444443

>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A*

Probab=98.47  E-value=2e-06  Score=84.88  Aligned_cols=123  Identities=15%  Similarity=0.108  Sum_probs=93.4

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCccccc----cc-ccc------ccccEEEEcCCC-----------CeEeeCCCCCH
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLN----SL-TAT------SETTASVMTRGG-----------SIVTLPHDLRI  371 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~----~~-~~~------~~~~~~~~d~~G-----------~~~~Lr~d~T~  371 (454)
                      -...+.+.|+++|...||.++.+|.+++..    .+ ...      ...+|.+.++..           +..+||..++.
T Consensus       102 p~~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp  181 (350)
T 1b7y_A          102 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP  181 (350)
T ss_dssp             HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTH
T ss_pred             HHHHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchH
Confidence            367899999999999999999999997743    22 111      145677776543           67899999999


Q ss_pred             HHHHHHHHcCCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhC-CC
Q psy7309         372 PFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRF-NY  441 (454)
Q Consensus       372 p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~-~~  441 (454)
                      ..+|.++.+  ..|.|+|++|+|||.+.....|..||+|...=++|..   ..-..+..++..+++.+ |.
T Consensus       182 ~llr~l~~~--~~piriFEiGrVFR~d~~d~tH~pEF~qlegl~~g~~---v~f~dLKg~le~ll~~lfG~  247 (350)
T 1b7y_A          182 MQVRYMVAH--TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEG---IAMAHLKGAIYELAQALFGP  247 (350)
T ss_dssp             HHHHHHHHC--CSSEEEEEEEEEECCCCCCSSCCSEEEEEEEEEEETT---CCHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHhc--CCCeeEEEeeeEEECCCCCCCCCChhHEEEEEEECCC---CCHHHHHHHHHHHHHhhcCC
Confidence            999999874  4799999999999986534457789999999999974   12345555666677766 75

>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}

Probab=98.42  E-value=1.3e-06  Score=89.76  Aligned_cols=135  Identities=21%  Similarity=0.235  Sum_probs=101.9

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccC-CCccccc----ccccc-------ccccEEEEcCC------------------
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQT-PLLTPLN----SLTAT-------SETTASVMTRG------------------  359 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~t-p~le~~~----~~~~~-------~~~~~~~~d~~------------------  359 (454)
                      +...-...+++.++++|...||.++.+ |.+|+..    .+...       ...+|.+.++.                  
T Consensus       222 G~lHPl~~v~~~Ir~if~~mGF~Ev~t~~~ves~~~NFDaLn~P~dHPaR~~~Dtfyi~~P~~~~~~~e~~~~~v~~~He  301 (508)
T 3l4g_A          222 GHLHPLLKVRSQFRQIFLEMGFTEMPTDNFIESSFWNFDALFQPQQHPARDQHDTFFLRDPAEALQLPMDYVQRVKRTHS  301 (508)
T ss_dssp             CBCCHHHHHHHHHHHHHHHTTCEECCCCCSEEEHHHHTGGGTCCSSSTTSSTTTSCBBSTTCBCSCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHCcCeEeccCCccccHHHHHHhcCCCCCCcccccCceEEEcCccccccccHHHHHhhhhhhh
Confidence            333468899999999999999999875 7666532    22110       12346665431                  


Q ss_pred             -----------------CCeEeeCCCCCHHHHHHHHHcC---CCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         360 -----------------GSIVTLPHDLRIPFARYLAQNG---SIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       360 -----------------G~~~~Lr~d~T~p~aR~~a~~~---~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                                       ++..+||..+|...+|.++.|.   ...|+|+|++|+|||++.....|..+|+|.+.=++|..
T Consensus       302 ~g~~~s~g~~~~~~~~~~~~~vLRThtsp~~lr~l~~N~~~~~~~PiriFeiGrVFR~d~~DatHlpeFhQlegl~~~~~  381 (508)
T 3l4g_A          302 QGGYGSQGYKYNWKLDEARKNLLRTHTTSASARALYRLAQKKPFTPVKYFSIDRVFRNETLDATHLAEFHQIEGVVADHG  381 (508)
T ss_dssp             TCBTTBCCCCSCCCHHHHTBEEECCCTHHHHHHHHHHHHTSSSCCCEEEEEEEEEECCSCCCSSSCSEEEEEEEEEEEES
T ss_pred             ccccCCccccccccccccccccccCCChHHHHHHHHHhhhhcCCCCceEEEEccEEecCCCCCCcCCeEEEEEEEEECCC
Confidence                             1579999999999999998742   24799999999999998877889999999998888743


Q ss_pred             CCcccHHHHHHHHHHHHHhCCCCCcEEE
Q psy7309         420 PGVLTMGSLRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       420 ~~~~~d~e~~~~~~~~l~~~~~~~~~i~  447 (454)
                         ....++..++..+++.+|+..+.++
T Consensus       382 ---v~f~dLKg~Le~~l~~lG~~~~rfr  406 (508)
T 3l4g_A          382 ---LTLGHLMGVLREFFTKLGITQLRFK  406 (508)
T ss_dssp             ---CCHHHHHHHHHHHHHTTTCCCCEEE
T ss_pred             ---CCHHHHHHHHHHHHHHcCCcceEee
Confidence               4667788888889999987555544

>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A*

Probab=98.37  E-value=1.1e-06  Score=90.78  Aligned_cols=83  Identities=17%  Similarity=0.264  Sum_probs=65.7

Q ss_pred             eEeeCCCCCHHHHHHHHHcCC--CCceeeEeecCccccCCC-CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         362 IVTLPHDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRV-LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       362 ~~~Lr~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~-~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      ..+||+.++..+-..++.|.+  ..|+|+|++|+|||++.. +.++++||.|+++.++|.. .  .-.++..++..+|+.
T Consensus       180 ~svLRTsLlPgLL~~lr~N~~r~~~pvrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~-v--df~dLKgilE~LL~~  256 (534)
T 2du3_A          180 TLTLRSHMTTGWFITLSHIADKLPLPIKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEE-L--SVDDGKAVAEALLRQ  256 (534)
T ss_dssp             EEEECSSHHHHHHHHHHTTTTTSCSSEEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSS-C--CHHHHHHHHHHHHGG
T ss_pred             ccccCccchhhHHHHHHHHHhCCCCCeeEEEEeeEEecCccccccccceeeEEEEEEECCC-C--CHHHHHHHHHHHHHH
Confidence            489999999977766665422  578999999999998766 6778999999999999974 2  246677888888888


Q ss_pred             CCCCCcEEE
Q psy7309         439 FNYGNISFA  447 (454)
Q Consensus       439 ~~~~~~~i~  447 (454)
                      +|+.++.++
T Consensus       257 LGi~~~r~~  265 (534)
T 2du3_A          257 FGFENFRFR  265 (534)
T ss_dssp             GTCCEEEEE
T ss_pred             cCCCeEEEE
Confidence            987655554

>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*

Probab=98.35  E-value=2.9e-06  Score=86.48  Aligned_cols=102  Identities=16%  Similarity=0.143  Sum_probs=75.4

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeE
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      ..+.+|.+|...+++.|..+||.+|+||+|...+.-  +..+.|.+ +--|+.+.||----+-.-+.++.     .-|+|
T Consensus       130 ~~~r~Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~e--G~~~~F~~-~~~g~~~~L~~SpqLylq~l~~g-----~~rvf  201 (435)
T 2xgt_A          130 ALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVE--GGSTLFNL-DYFGEQSFLTQSSQLYLETCIPT-----LGDVF  201 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCSS--CTTSCCEE-EETTEEEEECSCSHHHHHHHHHH-----HCSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCeEeeccCC--Cchhceee-ccCCcccccCCChHHHHHHhhhc-----cCceE
Confidence            556689999999999999999999999999766542  22345554 45678888884433333333432     23999


Q ss_pred             eecCccccCCCCC-CccceEEEEEEEEEcCC
Q psy7309         390 CIDRVFRERRVLG-FHPRELYECAFDIVTNT  419 (454)
Q Consensus       390 y~g~vfR~~~~~~-g~~rE~~Q~g~eiig~~  419 (454)
                      +||+|||.+.... -|+-||+|+++|..+.+
T Consensus       202 eIg~~FR~E~~~t~RH~~EFT~lE~e~af~d  232 (435)
T 2xgt_A          202 CIAQSYRAEKSRTRRHLAEYAHVEAECPFIT  232 (435)
T ss_dssp             EEEEEECCCSSCCTTCCSEEEEEEEEEESCC
T ss_pred             EEecceecCCCCccccccceeEEEEEEecCC
Confidence            9999999987554 34559999999999865

>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*

Probab=98.23  E-value=7.1e-06  Score=83.42  Aligned_cols=103  Identities=16%  Similarity=0.108  Sum_probs=78.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeE
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      +.+.+|..|...+++.|..+||.+|+||+|...+.  .+..++|.+. --|+.+.|+..--+-.-|.++.    ..-|+|
T Consensus       135 ~~~~~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~--eg~~~~f~~~-~~~~~~yL~~Spql~~q~l~~~----g~~rvf  207 (438)
T 3nem_A          135 AIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATAT--EGGTELFPMK-YFEEDAFLAQSPQLYKQIMMAS----GLDRVY  207 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS--SCSSSCCEEE-ETTEEEEECSCSHHHHHHGGGT----TCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcEEEeCCEEecCCC--CCCccceeEe-eCCccEEEecChHHHHHHHHhc----CCCceE
Confidence            44568999999999999999999999999988753  2233566553 3477789996665555555542    234999


Q ss_pred             eecCccccCCCCCC-ccceEEEEEEEEEcCC
Q psy7309         390 CIDRVFRERRVLGF-HPRELYECAFDIVTNT  419 (454)
Q Consensus       390 y~g~vfR~~~~~~g-~~rE~~Q~g~eiig~~  419 (454)
                      +||+|||.+....+ |.-||+|+++|..+.+
T Consensus       208 ~i~~~FR~E~~~t~RH~pEFt~le~e~a~~~  238 (438)
T 3nem_A          208 EIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE  238 (438)
T ss_dssp             EEEEEECCCSSCCTTCCSEEEEEEEEEESCS
T ss_pred             EEcceEECCCCCCcccccceeeeeeeeccCc
Confidence            99999999876544 5569999999999875

>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A*

Probab=98.02  E-value=4.3e-05  Score=73.82  Aligned_cols=121  Identities=14%  Similarity=0.128  Sum_probs=86.9

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCccccc----cc-cccc------cccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCC
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLN----SL-TATS------ETTASVMTRGGSIVTLPHDLRIPFARYLAQNGS  382 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~----~~-~~~~------~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~  382 (454)
                      -..++.+.|+++|...||.++.+|.+++..    .+ ....      .+.+.+.    +..+||+-++..+.|.++.|.+
T Consensus        54 ~~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~l~----e~~vLRtsl~p~ll~~l~~N~~  129 (294)
T 2rhq_A           54 PLTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFYIT----DEILMRTHTSPVQARTMEKRNG  129 (294)
T ss_dssp             HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCBSS----SSEEECSSSHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEEEc----CcceeeccCHHHHHHHHHhcCC
Confidence            367889999999999999999999887742    22 1111      1234442    5679999999999999998743


Q ss_pred             CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhC-CC
Q psy7309         383 IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRF-NY  441 (454)
Q Consensus       383 ~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~-~~  441 (454)
                      ..+.|+|.+|+|||.+.....+..||.|.+.=+.|..   ..-.++..++..+++.+ |+
T Consensus       130 ~~~~riFEiG~Vfr~d~~d~~h~~Ef~~Le~~~~g~~---~df~dlKg~le~ll~~l~g~  186 (294)
T 2rhq_A          130 QGPVKIICPGKVYRRDSDDATHSHQFTQIEGLVVDKN---IKMSDLKGTLELVAKKLFGA  186 (294)
T ss_dssp             CSCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEEESS---CCHHHHHHHHHHHHHHHHCT
T ss_pred             CCCccEEEEcCEEecCCCCCCCCChhhEEEEEEECCC---CCHHHHHHHHHHHHHHHhCC
Confidence            4789999999999975423345569999998888864   12234444555566666 75

>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}

Probab=98.01  E-value=1.8e-05  Score=81.65  Aligned_cols=82  Identities=17%  Similarity=0.238  Sum_probs=62.2

Q ss_pred             eEeeCCCCCHHHHHHHHHcC--CCCceeeEeecCccccCCC-CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         362 IVTLPHDLRIPFARYLAQNG--SIVSMKRYCIDRVFRERRV-LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       362 ~~~Lr~d~T~p~aR~~a~~~--~~~~~k~~y~g~vfR~~~~-~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      ..+||+.++..+...++.|.  +..|+|+|++|+|||.+.. ...+++||.|.+.-++|..   ....++..++-.+|+.
T Consensus       192 ~svLRTsLlPGLL~~vr~N~~r~~~pvrlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~---vdF~DLKG~Le~ll~~  268 (549)
T 2du7_A          192 TLTLRSHMTSGWFITLSSLIKKRKLPLKLFSIDRCFRREQREDRSHLMSYHSASCVVVGED---VSVDDGKVVAEGLLAQ  268 (549)
T ss_dssp             EEECCSTTHHHHHHHHHTTTTTSCSSEEEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTT---CCHHHHHHHHHHHHGG
T ss_pred             ccccccccchhHHHHHHHHHhcCCCCeEEEEEeeEEecCCcccCcCCCcceEEEEEEECCC---CCHHHHHHHHHHHHHH
Confidence            57899999997766666542  1579999999999997653 4567899999999999974   3456677777778888


Q ss_pred             CCCCCcEE
Q psy7309         439 FNYGNISF  446 (454)
Q Consensus       439 ~~~~~~~i  446 (454)
                      +|+..+.+
T Consensus       269 LGi~~~rf  276 (549)
T 2du7_A          269 FGFTKFKF  276 (549)
T ss_dssp             GTCCCCCC
T ss_pred             cCCCeEEE
Confidence            88643433

>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A*

Probab=97.98  E-value=2e-05  Score=76.62  Aligned_cols=134  Identities=9%  Similarity=-0.016  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCC------------------------CCe
Q psy7309         313 SLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRG------------------------GSI  362 (454)
Q Consensus       313 ~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~------------------------G~~  362 (454)
                      .+++.|.+-+++ -..+||++|.+|.+.+.+.+..+      .+++|.+..-.                        +..
T Consensus        65 ~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l~~~d  143 (346)
T 3mf2_A           65 SIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSLSPAD  143 (346)
T ss_dssp             HHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGEEEEE
T ss_pred             HHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhccccccccccCCCC
Confidence            366667777777 77889999999999999987653      26788764322                        347


Q ss_pred             EeeCCCCCHHHHHHHHHc--CCCCceeeEeecCccccCCC-CCCccceEEEEEEEEEcCCCC-cccHHHHHHHHHHHHHh
Q psy7309         363 VTLPHDLRIPFARYLAQN--GSIVSMKRYCIDRVFRERRV-LGFHPRELYECAFDIVTNTPG-VLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       363 ~~Lr~d~T~p~aR~~a~~--~~~~~~k~~y~g~vfR~~~~-~~g~~rE~~Q~g~eiig~~~~-~~~d~e~~~~~~~~l~~  438 (454)
                      ++|.|=.-+|+.-++...  -...|+|+..+|.|||++.. +--|.+||.|..+=+++.... ...-.+++.++.++|+.
T Consensus       144 ~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~~~tpEqs~~e~e~l~~~ae~il~~  223 (346)
T 3mf2_A          144 LVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVCIGTPDDVSDFRERWMVRAQAIARD  223 (346)
T ss_dssp             EEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEEEESHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEEEeCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887742  11458899999999999763 336778999988888886422 22344578899999999


Q ss_pred             CCCCCcEEEc
Q psy7309         439 FNYGNISFAP  448 (454)
Q Consensus       439 ~~~~~~~i~i  448 (454)
                      ||+ .|.+.+
T Consensus       224 LgL-pyrv~~  232 (346)
T 3mf2_A          224 LGL-TFRVDY  232 (346)
T ss_dssp             TTC-CCEEEE
T ss_pred             CCC-CEEEEE
Confidence            999 577765

>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A

Probab=97.97  E-value=3.3e-05  Score=78.88  Aligned_cols=102  Identities=12%  Similarity=0.087  Sum_probs=75.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeE
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      +.+.+|..|...+++.|..+||.+|+||+|...+.-  +..+.|.+ |--|+...|+----+-.-+.++.     --|+|
T Consensus       154 ~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~e--Gg~~~f~~-~~~~~~~~L~~SpqL~lq~l~~g-----~~rVy  225 (456)
T 3m4p_A          154 QVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCE--GGSTLFKL-QYFNEPAYLTQSSQLYLESVIAS-----LGKSF  225 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC--------CCCCEE-EETTEEEEECSCCHHHHHTTHHH-----HSSEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCC--Cccccccc-cccCCCcccccCHHHHHHHHHhc-----cCcEE
Confidence            445689999999999999999999999999665432  22345543 55577788887776666665552     23999


Q ss_pred             eecCccccCCCC-CCccceEEEEEEEEEcCC
Q psy7309         390 CIDRVFRERRVL-GFHPRELYECAFDIVTNT  419 (454)
Q Consensus       390 y~g~vfR~~~~~-~g~~rE~~Q~g~eiig~~  419 (454)
                      +||+|||.+... .-|.-||+|+.+|..+.+
T Consensus       226 eig~~FR~E~~~t~rH~pEFtmlE~e~af~d  256 (456)
T 3m4p_A          226 CMLSSYRAEQSRTVRHLAEYLHLEAELPFIS  256 (456)
T ss_dssp             EEEEEECCCSCCCSSCCSEEEEEEEEEESCC
T ss_pred             EEEhheecCCCCCCcchHHHHHhHHHHhcCC
Confidence            999999997643 345569999999998864

>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B*

Probab=97.93  E-value=1.3e-05  Score=82.10  Aligned_cols=138  Identities=13%  Similarity=0.017  Sum_probs=90.3

Q ss_pred             chhhHHHHHHHHHHHHH-H-HhcCCccccCCCcccccccccc-c----------cc----------cEEEE-cCCCCeEe
Q psy7309         309 SANFSLLESTGDKLRRI-F-QLHGGAHFQTPLLTPLNSLTAT-S----------ET----------TASVM-TRGGSIVT  364 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~-f-~~~G~~~i~tp~le~~~~~~~~-~----------~~----------~~~~~-d~~G~~~~  364 (454)
                      |.-..+++.|++.+.+- | .+.|+.+|+||.+.|.+++..+ .          ++          ++.++ +..++.+.
T Consensus        59 P~G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~  138 (454)
T 1g5h_A           59 PLGVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGK  138 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCE
T ss_pred             chHHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCccee
Confidence            77888999999988877 4 6999999999999998866432 0          11          11111 11235689


Q ss_pred             eCCCCCHHHH--HH---HHHcCCCCceeeEeecCcccc---C-CCCC--CccceEEEEEEEEEcCCCCc-ccHHHHHHHH
Q psy7309         365 LPHDLRIPFA--RY---LAQNGSIVSMKRYCIDRVFRE---R-RVLG--FHPRELYECAFDIVTNTPGV-LTMGSLRRCL  432 (454)
Q Consensus       365 Lr~d~T~p~a--R~---~a~~~~~~~~k~~y~g~vfR~---~-~~~~--g~~rE~~Q~g~eiig~~~~~-~~d~e~~~~~  432 (454)
                      ||| .|.|..  -+   +-.....+|++++++|+|||.   + .+..  -|.|||.|...+++-..... ..-..++...
T Consensus       139 LRP-eta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~F~~pe~~~e~~~~~~~~~  217 (454)
T 1g5h_A          139 LRA-TLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHR  217 (454)
T ss_dssp             ECS-CSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             ecc-cccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEEEeCHhhHHHHHHHHHHHH
Confidence            999 676432  22   112222689999999999993   4 2334  37899999999988653111 1222356777


Q ss_pred             HHHHHhCCCCCcEEE
Q psy7309         433 MGSFRRFNYGNISFA  447 (454)
Q Consensus       433 ~~~l~~~~~~~~~i~  447 (454)
                      .+++..||+....++
T Consensus       218 ~~~~~~lgi~~~~~r  232 (454)
T 1g5h_A          218 LLWWRKFAMSPSNFS  232 (454)
T ss_dssp             HHHHHTTCSSGGGEE
T ss_pred             HHHHHHcCCCceeEE
Confidence            889999999644443

>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}

Probab=97.93  E-value=8.1e-05  Score=77.31  Aligned_cols=104  Identities=13%  Similarity=0.138  Sum_probs=79.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEE-cCCCCeEeeCCCCCHHHHHHHHHcCCCCceee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM-TRGGSIVTLPHDLRIPFARYLAQNGSIVSMKR  388 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~-d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~  388 (454)
                      ..+.+|..|...+++.|..+||.+|+||+|.+...  ....+.|.+- +.-|..+.||----+-.-|.++.    .--|+
T Consensus       174 ~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~g--Ga~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~----g~~rV  247 (521)
T 3bju_A          174 QKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPG--GAVAKPFITYHNELDMNLYMRIAPELYHKMLVVG----GIDRV  247 (521)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCC--SSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHT----TCCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCC--CccccceeeecccCCcceEeeCCHHHHHHHHHhc----CcCce
Confidence            55668999999999999999999999999986531  1123566553 44688889996555555555552    23499


Q ss_pred             EeecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         389 YCIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       389 ~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      |+||+|||.+....-|.-||+|+.++....+
T Consensus       248 yeig~~FR~E~~~trH~pEFtmlE~e~af~d  278 (521)
T 3bju_A          248 YEIGRQFRNEGIDLTHNPEFTTCEFYMAYAD  278 (521)
T ss_dssp             EEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred             EEEEcceeCCCCCCccchhhhhhhhhhhcCC
Confidence            9999999998766677789999999998864

>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}

Probab=97.92  E-value=8.8e-05  Score=76.80  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEE-EcCCCCeEeeCCCCCHHHHHHHHHcCCCCceee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASV-MTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKR  388 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~-~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~  388 (454)
                      ..+.+|..|...+++.|..+||.+|+||+|.+..  .....+.|.. .+.-|..+.||----+-.-|.++..    --|+
T Consensus       202 ~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~~--gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G----~~rV  275 (529)
T 4ex5_A          202 TTFRARTKAIASIRKFMGDADFMEVETPMLHPIP--GGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGG----FERV  275 (529)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC--CSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTT----CSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEeCCeeeccC--CCCcccccccccccCCcceecccCHHHHHHHHHhcC----CCcE
Confidence            5567899999999999999999999999998542  1111245543 3556777888865555555655532    3499


Q ss_pred             EeecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         389 YCIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       389 ~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      |+||+|||.+....-|.-||+|+.++.-..+
T Consensus       276 yeIg~~FR~E~~~~rH~pEFtmlE~e~af~d  306 (529)
T 4ex5_A          276 FEINRNFRNEGVSPRHNPEFTMMEFYAAYTD  306 (529)
T ss_dssp             EEEEEEECCSCCBTTBCSEEEEEEEEEETCC
T ss_pred             EEeehheecCCCCCCcccHhHhhhhhhhcCC
Confidence            9999999998776777889999999998754

>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*

Probab=97.92  E-value=8.1e-05  Score=78.45  Aligned_cols=103  Identities=17%  Similarity=0.184  Sum_probs=73.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEE--cCCCCeEeeCCCCCHHHHHHHHHcCCCCcee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM--TRGGSIVTLPHDLRIPFARYLAQNGSIVSMK  387 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~--d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k  387 (454)
                      ..+.+|..|...+++.|..+||.+|+||+|...+.-.  . +-|.+-  ...|.-.+||---=+-.-|.++.    .--|
T Consensus       136 ~~l~~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eG--A-r~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~----G~~r  208 (585)
T 1c0a_A          136 QRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEG--A-RDYLVPSRVHKGKFYALPQSPQLFKQLLMMS----GFDR  208 (585)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS--S-CCCEEECSSSTTCEEECCSCSHHHHHHHHHT----TCCE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC--C-ccceecccccCCceEeCccCHHHHHHHHHhc----CCCc
Confidence            4456899999999999999999999999998654221  1 224432  23577777884433333444442    2349


Q ss_pred             eEeecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         388 RYCIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      +|+||+|||.+.....|.=||+|+.+|.-..+
T Consensus       209 vfqI~~~FR~E~~~t~r~pEFT~lE~e~af~d  240 (585)
T 1c0a_A          209 YYQIVKCFRDEDLRADRQPEFTQIDVETSFMT  240 (585)
T ss_dssp             EEEEEEEECCCCCBTTBCSEEEEEEEEEESCC
T ss_pred             eEEEeceeecCCCCCCcCcccceeeeeecCCC
Confidence            99999999997755444339999999998864

>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A

Probab=97.89  E-value=8.2e-05  Score=78.21  Aligned_cols=103  Identities=15%  Similarity=0.162  Sum_probs=72.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEc--CCCCeEeeCCCCCHHHHHHHHHcCCCCcee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMT--RGGSIVTLPHDLRIPFARYLAQNGSIVSMK  387 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d--~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k  387 (454)
                      ..+.+|.+|...+++.|..+||.+|+||+|...+.-.  . +-|.+--  ..|.-.+||----+-.-|.++.    .--|
T Consensus       142 ~~l~~Rs~i~~~iR~fl~~~gF~EVeTPiL~~s~~eG--A-r~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~----G~~r  214 (580)
T 1l0w_A          142 ENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEG--A-RDFLVPYRHEPGLFYALPQSPQLFKQMLMVA----GLDR  214 (580)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS--S-CCCEEECTTSTTEEEECCSCSHHHHHHHHHT----TCSE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC--C-CCccccccccCCceeECccCHHHHHHHHHHh----ccCC
Confidence            4456899999999999999999999999998654321  1 2244322  3466677885433333443442    2349


Q ss_pred             eEeecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         388 RYCIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      +|+||+|||.+.....|.=||+|+.+|.-..+
T Consensus       215 vfqI~~~FR~E~~~~~r~pEFT~lE~e~af~d  246 (580)
T 1l0w_A          215 YFQIARCFRDEDLRADRQPDFTQLDLEMSFVE  246 (580)
T ss_dssp             EEEEEEEECCCCCCSSCCSEEEEEEEEEESCC
T ss_pred             eEEEeceeeCCCCCCCcCCCccceeeeecCCC
Confidence            99999999997765544339999999998865

>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}

Probab=97.81  E-value=5.1e-05  Score=73.93  Aligned_cols=117  Identities=16%  Similarity=0.121  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHhcCCccccCCCccccc-cccc---cc-------cccEEEEcCCCCeEeeCCCCCHHHHHHHHHcC
Q psy7309         313 SLLESTGDKLRRIFQLHGGAHFQTPLLTPLN-SLTA---TS-------ETTASVMTRGGSIVTLPHDLRIPFARYLAQNG  381 (454)
Q Consensus       313 ~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~-~~~~---~~-------~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~  381 (454)
                      .-...+.++|+++|...||.++.+|.++... .|..   ..       ..+|.+ +   +..+||..++....|.++.+ 
T Consensus       107 hp~~~~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i-~---e~~vLRThtsp~~lr~l~~~-  181 (327)
T 3pco_A          107 HPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF-D---TTRLLRTQTSGVQIRTMKAQ-  181 (327)
T ss_dssp             CHHHHHHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBS-S---SSCEECSCTHHHHHHHHTTC-
T ss_pred             CHHHHHHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEe-C---CCceecccCCHHHHHHHHhC-
Confidence            3577899999999999999999999986532 1211   00       123333 2   45799999999999998764 


Q ss_pred             CCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhC
Q psy7309         382 SIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRF  439 (454)
Q Consensus       382 ~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~  439 (454)
                       ..|+|.|.+|+|||.+ ....|.-+|.|...=++|..   ..-.++-.++-.+++.+
T Consensus       182 -~~pirifeiGrVyR~d-~d~th~p~fhqlegl~v~~~---v~f~dLKg~Le~~l~~l  234 (327)
T 3pco_A          182 -QPPIRIIAPGRVYRND-YDQTHTPMFHQMEGLIVDTN---ISFTNLKGTLHDFLRNF  234 (327)
T ss_dssp             -CSSCCBCCEECCBCSC-CBTTBCSBCCEEEEEEEETT---CCHHHHHHHHHHHHHHH
T ss_pred             -CCCeeEEeeccEEecC-CCcccCCcccEEEEEEECCC---CCHHHHHHHHHHHHHHH
Confidence             4799999999999986 34566678999866667654   22334444555555555

>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens}

Probab=97.74  E-value=0.00035  Score=73.51  Aligned_cols=118  Identities=15%  Similarity=0.140  Sum_probs=84.1

Q ss_pred             hhhHHHHHHHHHHHHHHH-hcCCccccCCCccccccccccccccEEEE-cCCCCeEeeCCCCCHHHHHHHHHcCCCCcee
Q psy7309         310 ANFSLLESTGDKLRRIFQ-LHGGAHFQTPLLTPLNSLTATSETTASVM-TRGGSIVTLPHDLRIPFARYLAQNGSIVSMK  387 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~-~~G~~~i~tp~le~~~~~~~~~~~~~~~~-d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k  387 (454)
                      ..+.+|..|...+++.|. .+||.+|+||+|...+.-   +.+.|.+- ...|+-+.|+----+-.-+.++.    .--|
T Consensus       146 ~~lr~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st~~---GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~----g~~r  218 (617)
T 4ah6_A          146 YNLRLRSQMVMKMREYLCNLHGFVDIETPTLFKRTPG---GAKEFLVPSREPGKFYSLPQSPQQFKQLLMVG----GLDR  218 (617)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCEECCCCSSBCCCCS---SSCCCEEECSSTTCEEECCSSTTHHHHHHHHT----SCSE
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeEEEeCCeeccCCCC---CCcCceeccccCCcccccccCHHHHHHHHHhc----ccCc
Confidence            445689999999999996 799999999999754321   12334442 23577788885443333344442    2349


Q ss_pred             eEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhC
Q psy7309         388 RYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRF  439 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~  439 (454)
                      +|+||+|||.+.....|.-||+|..+|.-..+     ..+++.++-+.+..+
T Consensus       219 vfqi~~~FR~E~~~t~r~pEFt~lE~e~af~d-----~~d~m~~~E~l~~~~  265 (617)
T 4ah6_A          219 YFQVARCYRDEGSRPDRQPEFTQIDIEMSFVD-----QTGIQSLIEGLLQYS  265 (617)
T ss_dssp             EEEEEEEECCCSSCSSSCSEEEEEEEEEESCC-----HHHHHHHHHHHHHHH
T ss_pred             EEEEEhheecccCCCCcCcceecceeeecCCC-----HHHHHHHHHHHHHHH
Confidence            99999999998777777889999999998864     455666666666554

>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}

Probab=97.70  E-value=0.00014  Score=75.42  Aligned_cols=101  Identities=15%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeE
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      ..+.+|..|...+++.|..+||.+|+||+|.....-  ...+.|.+ +--|..+.|+----+-.-|.++.    ..-|+|
T Consensus       242 ~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~e--gga~~F~v-~~~~~~~yL~~Spql~~k~ll~~----g~~rVf  314 (548)
T 3i7f_A          242 AIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSE--GGSNIFEV-KYFDRKAYLAQSPQLYKQMAIMG----DFRKVF  314 (548)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSBC----------------------CCBCSCTHHHHHHHHTT----TCCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEEeCCEEecccCC--CCcceeEE-ecCCCceEeccCHHHHHHHHHhc----CcCcEE
Confidence            445689999999999999999999999999887632  22345543 33455567775544444455542    235999


Q ss_pred             eecCccccCCCC-CCccceEEEEEEEE-Ec
Q psy7309         390 CIDRVFRERRVL-GFHPRELYECAFDI-VT  417 (454)
Q Consensus       390 y~g~vfR~~~~~-~g~~rE~~Q~g~ei-ig  417 (454)
                      +||+|||.+... .-|.-||+|..+|. ++
T Consensus       315 eI~~~FR~E~~~t~RHl~EFtmlE~e~af~  344 (548)
T 3i7f_A          315 EVGPVFRAENSNTRRHLTEFEGLDIEMEIV  344 (548)
T ss_dssp             EEEEECCCSCCCSSSCCSCEEEEEEEEECS
T ss_pred             EEeeeEecCCCCCCCcchhhhchhhhhhhh
Confidence            999999987643 34567999999996 45

>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}

Probab=97.66  E-value=0.00039  Score=72.36  Aligned_cols=83  Identities=17%  Similarity=0.229  Sum_probs=60.8

Q ss_pred             eEeeCCCCCHHHHHHHHHcC--CCCceeeEeecCccccCCC-CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         362 IVTLPHDLRIPFARYLAQNG--SIVSMKRYCIDRVFRERRV-LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       362 ~~~Lr~d~T~p~aR~~a~~~--~~~~~k~~y~g~vfR~~~~-~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      ..+||+.++..+...++.|.  +..|+|+|.+|+|||.+.. ...++.||.|.+.=++|..   ..-.++-.++-.+|+.
T Consensus       199 ~sVLRTsLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~---vdF~DLKGvLE~LL~~  275 (648)
T 2odr_B          199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG---VDINDGKAIAEGLLSQ  275 (648)
T ss_dssp             SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT---CCHHHHHHHHHHHHHT
T ss_pred             cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCC---CCHHHHHHHHHHHHHH
Confidence            57899999996666655542  1589999999999997543 3456789999999999974   2234556666677788


Q ss_pred             CCCCCcEEE
Q psy7309         439 FNYGNISFA  447 (454)
Q Consensus       439 ~~~~~~~i~  447 (454)
                      +|+..+.++
T Consensus       276 LGi~~vrfr  284 (648)
T 2odr_B          276 FGFTNFKFI  284 (648)
T ss_dssp             TTCCCEEEE
T ss_pred             cCCCeEEEE
Confidence            887555554

>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}

Probab=97.65  E-value=0.00041  Score=72.34  Aligned_cols=83  Identities=17%  Similarity=0.229  Sum_probs=60.8

Q ss_pred             eEeeCCCCCHHHHHHHHHcC--CCCceeeEeecCccccCCC-CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         362 IVTLPHDLRIPFARYLAQNG--SIVSMKRYCIDRVFRERRV-LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       362 ~~~Lr~d~T~p~aR~~a~~~--~~~~~k~~y~g~vfR~~~~-~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      ..+||+.++..+...++.|.  +..|+|+|.+|+|||.+.. ...++.||.|.+.=++|..   ..-.++-.++-.+|+.
T Consensus       199 ~sVLRTSLlPGLL~~lr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~---vdF~DLKGvLE~LL~~  275 (665)
T 2odr_A          199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG---VDINDGKAIAEGLLSQ  275 (665)
T ss_dssp             SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT---CCHHHHHHHHHHHHHT
T ss_pred             cCcccccchhhHHHHHHHHHhcCCCCeEEEEEeeEEecCccccccCCCcceEEEEEEECCC---CCHHHHHHHHHHHHHH
Confidence            57899999996666655542  1589999999999997543 3456789999999999974   2234556666677788


Q ss_pred             CCCCCcEEE
Q psy7309         439 FNYGNISFA  447 (454)
Q Consensus       439 ~~~~~~~i~  447 (454)
                      +|+..+.++
T Consensus       276 LGi~~vrfr  284 (665)
T 2odr_A          276 FGFTNFKFI  284 (665)
T ss_dssp             TTCCCEEEE
T ss_pred             cCCCeEEEE
Confidence            887555554

>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}

Probab=97.64  E-value=0.00042  Score=72.35  Aligned_cols=83  Identities=17%  Similarity=0.229  Sum_probs=60.8

Q ss_pred             eEeeCCCCCHHHHHHHHHcC--CCCceeeEeecCccccCCC-CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         362 IVTLPHDLRIPFARYLAQNG--SIVSMKRYCIDRVFRERRV-LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       362 ~~~Lr~d~T~p~aR~~a~~~--~~~~~k~~y~g~vfR~~~~-~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      ..+||+.++..+...++.|.  +..|+|+|.+|+|||.+.. ...++.||.|.+.=++|..   ..-.++-.++-.+|+.
T Consensus       199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~---vDF~DLKGvLE~LL~~  275 (685)
T 2odr_D          199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG---VDINDGKAIAEGLLSQ  275 (685)
T ss_dssp             SEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT---CCHHHHHHHHHHHHHT
T ss_pred             cCcccccchhhHHHHHHHHHhCCCCCeEEEEeccEEecCccccccCCCcceEEEEEEECCC---CCHHHHHHHHHHHHHH
Confidence            57899999996666655542  1589999999999997543 3456789999999999974   2234556666677788


Q ss_pred             CCCCCcEEE
Q psy7309         439 FNYGNISFA  447 (454)
Q Consensus       439 ~~~~~~~i~  447 (454)
                      +|+..+.++
T Consensus       276 LGi~~vrfr  284 (685)
T 2odr_D          276 FGFTNFKFI  284 (685)
T ss_dssp             TTCCCEEEE
T ss_pred             cCCCeEEEE
Confidence            887555554

>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis}

Probab=97.61  E-value=0.00046  Score=72.20  Aligned_cols=83  Identities=17%  Similarity=0.229  Sum_probs=60.8

Q ss_pred             eEeeCCCCCHHHHHHHHHcC--CCCceeeEeecCccccCCC-CCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHh
Q psy7309         362 IVTLPHDLRIPFARYLAQNG--SIVSMKRYCIDRVFRERRV-LGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRR  438 (454)
Q Consensus       362 ~~~Lr~d~T~p~aR~~a~~~--~~~~~k~~y~g~vfR~~~~-~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~  438 (454)
                      ..+||+.++..+...++.|.  +..|+|+|.+|+|||.+.. ...++.||.|.+.=++|..   ..-.++-.++-.+|+.
T Consensus       199 ~sVLRTSLlPGLL~~vr~N~~R~~~pvRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~---vDF~DLKGvLE~LL~~  275 (701)
T 2odr_C          199 KLTLRSHMTSGWFLTVSDLMNKKPLPFKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEG---VDINDGKAIAEGLLSQ  275 (701)
T ss_dssp             EEEECCCTHHHHHHHHHHHTTTSCSCEEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTT---CCHHHHHHHHHHHHHT
T ss_pred             cCcccccchhhHHHHHHHHHhCCCCCeEEEEEeeEEccCccccccCCCcceEEEEEEECCC---CCHHHHHHHHHHHHHH
Confidence            56899999996666655542  1589999999999997543 3456789999999999974   2234556666677788


Q ss_pred             CCCCCcEEE
Q psy7309         439 FNYGNISFA  447 (454)
Q Consensus       439 ~~~~~~~i~  447 (454)
                      +|+..+.++
T Consensus       276 LGi~~vrfr  284 (701)
T 2odr_C          276 FGFTNFKFI  284 (701)
T ss_dssp             TTCCCEEEE
T ss_pred             cCCCeEEEE
Confidence            887555554

>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis}

Probab=97.51  E-value=0.00092  Score=61.27  Aligned_cols=133  Identities=11%  Similarity=-0.035  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCccccccccc----cccccEEEEcC-CCCeEeeCCCCCHHHHHHHHHcCC--CCcee
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA----TSETTASVMTR-GGSIVTLPHDLRIPFARYLAQNGS--IVSMK  387 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~----~~~~~~~~~d~-~G~~~~Lr~d~T~p~aR~~a~~~~--~~~~k  387 (454)
                      .+++.+++++.+...||.|+.|-+|...+.+..    .....+++.++ +-+.-+||+.+...+.+.++.|.+  ...+|
T Consensus         6 ~~~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~   85 (213)
T 3ica_A            6 RYKWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLY   85 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEE
T ss_pred             HHHHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCee
Confidence            557888999999999999999999977664321    12356788887 566789999999999999987632  34589


Q ss_pred             eEeecCccccCCCC------CCccceEEEEEEEEEcCCC-------CcccHHH-HHHHHHHHHHhCCCC--CcEEE
Q psy7309         388 RYCIDRVFRERRVL------GFHPRELYECAFDIVTNTP-------GVLTMGS-LRRCLMGSFRRFNYG--NISFA  447 (454)
Q Consensus       388 ~~y~g~vfR~~~~~------~g~~rE~~Q~g~eiig~~~-------~~~~d~e-~~~~~~~~l~~~~~~--~~~i~  447 (454)
                      +|.+|+||+.+...      -+.++|....++=+.|...       +...|.. +-.++-.+|+.+|++  ++.++
T Consensus        86 lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~lgi~~~~~~~~  161 (213)
T 3ica_A           86 LFEWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRVGIETGAYTLK  161 (213)
T ss_dssp             EEEEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             EEEeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEe
Confidence            99999999974311      1345788888887888420       2234544 444555678889986  46654

>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis}

Probab=97.48  E-value=0.00085  Score=61.51  Aligned_cols=133  Identities=10%  Similarity=0.023  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCccccccccc----cccccEEEEcC-CCCeEeeCCCCCHHHHHHHHHcCC--CCcee
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA----TSETTASVMTR-GGSIVTLPHDLRIPFARYLAQNGS--IVSMK  387 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~----~~~~~~~~~d~-~G~~~~Lr~d~T~p~aR~~a~~~~--~~~~k  387 (454)
                      .+++.+++++++...||.++.|-.|...+.+..    .....+++.++ +-+.-+||+.+...+.+.++.|.+  ..++|
T Consensus         6 ~~~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~   85 (213)
T 3ig2_A            6 SNKLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLK   85 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCE
T ss_pred             HHHHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCee
Confidence            457888999999999999999999977665421    12457888887 556788999999999999998743  34689


Q ss_pred             eEeecCccccCCCC------CCccceEEEEEEEEEcCCC-------CcccHHHHHH-HHHHHHHhCCCC--CcEEE
Q psy7309         388 RYCIDRVFRERRVL------GFHPRELYECAFDIVTNTP-------GVLTMGSLRR-CLMGSFRRFNYG--NISFA  447 (454)
Q Consensus       388 ~~y~g~vfR~~~~~------~g~~rE~~Q~g~eiig~~~-------~~~~d~e~~~-~~~~~l~~~~~~--~~~i~  447 (454)
                      +|.+|+||+.+...      .+.++|....++=+.|...       +...|..-+. ++-.+|+.+|++  ++.++
T Consensus        86 lFEiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~lg~~~~~~~~~  161 (213)
T 3ig2_A           86 FFEFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRLGLDLHSLVVG  161 (213)
T ss_dssp             EEEEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHTTBCGGGCEEE
T ss_pred             EEEeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHhCCCccceEEe
Confidence            99999999975311      1245788888887778310       1234555444 555577889986  46654

>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}

Probab=97.43  E-value=0.00074  Score=71.37  Aligned_cols=124  Identities=10%  Similarity=0.042  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCcccccc----ccc--cccccEEEEcC-CCCeEeeCCCCCHHHHHHHHHcCC-CCce
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLNS----LTA--TSETTASVMTR-GGSIVTLPHDLRIPFARYLAQNGS-IVSM  386 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~~----~~~--~~~~~~~~~d~-~G~~~~Lr~d~T~p~aR~~a~~~~-~~~~  386 (454)
                      .+++.++++.+|...||.++.|..|...+.    +..  .....+++.++ +-+.-+||+.+...+.+.++.|.+ ..|+
T Consensus       393 ~~~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~v  472 (589)
T 3l4g_B          393 LNKLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPL  472 (589)
T ss_dssp             HHHHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCE
T ss_pred             HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCce
Confidence            456788999999999999999999976542    211  12356788877 445579999999999999998743 3589


Q ss_pred             eeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHH-HHHHHHHHHHhCCCC
Q psy7309         387 KRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGS-LRRCLMGSFRRFNYG  442 (454)
Q Consensus       387 k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e-~~~~~~~~l~~~~~~  442 (454)
                      |+|.+|+|||.+.....+.+|+.+.+.=+.|..    .+.+ +-.++-.+++.+|++
T Consensus       473 rlFEiG~Vf~~d~~~~~~~~e~~~la~~~~g~~----~~f~~lkg~le~ll~~lg~~  525 (589)
T 3l4g_B          473 KLFEISDIVIKDSNTDVGAKNYRHLCAVYYNKN----PGFEIIHGLLDRIMQLLDVP  525 (589)
T ss_dssp             EEEEEEEEEEECTTSTTSEEEEEEEEEEEESSS----CCHHHHHHHHHHHHHHTTCC
T ss_pred             EEEEeeeEEecCCccccCCccccEEEEEEECCC----CCHHHHHHHHHHHHHHcCCC
Confidence            999999999976433345689999988788864    2344 334555677888885

>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens}

Probab=97.36  E-value=0.00049  Score=69.94  Aligned_cols=124  Identities=11%  Similarity=-0.049  Sum_probs=82.2

Q ss_pred             chhhHHHHHHHHHHHHHHHh-cC-CccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc-----C
Q psy7309         309 SANFSLLESTGDKLRRIFQL-HG-GAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQN-----G  381 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~-~G-~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~-----~  381 (454)
                      |.-+.+++.|.+.....|.. .| +.+|+||..+++....  --.-|+        +.||| +|.|..=..-.+     .
T Consensus       101 P~G~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SG--H~d~~~--------~~LRP-eTaqg~~~nfk~~~~s~r  169 (459)
T 3ikl_A          101 PLGVELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLP--GDSAFR--------GGLRE-NLLHGALEHYVNCLDLVN  169 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCS--SCSCCT--------TB-CS-CSHHHHHHHTTTTTGGGT
T ss_pred             CcHHHHHHHHHHHHHHHHhhccCceEeeccccccccccCc--chhhhc--------ceECC-CCChhHHHHHhhhhhhcc
Confidence            78888999999977777775 66 5569999955533211  011222        99999 465554221111     1


Q ss_pred             CCCceeeEeecCccccCC----CCC--CccceEEEEEEEEEcCCCC-cccHHHHHHHHHHHHHhCCCCC
Q psy7309         382 SIVSMKRYCIDRVFRERR----VLG--FHPRELYECAFDIVTNTPG-VLTMGSLRRCLMGSFRRFNYGN  443 (454)
Q Consensus       382 ~~~~~k~~y~g~vfR~~~----~~~--g~~rE~~Q~g~eiig~~~~-~~~d~e~~~~~~~~l~~~~~~~  443 (454)
                      ...|+|+..+|+|||++.    +..  -|-|||.|...+++-.+.. ...-..++..+.+++..||+..
T Consensus       170 ~~LP~~iaqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~F~~Pe~~~e~~~~~~~~~~~~~~~LGi~~  238 (459)
T 3ikl_A          170 KRLPYGLAQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVWFTPPRTSNQWLDFWLRHRLQWWRKFAMSP  238 (459)
T ss_dssp             TBSSEEEEEEEEEECCC----------CCCCEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHHCSSG
T ss_pred             ccCCeEEEEEeeeeecccccccCCCCcccccceeeeeEEEEeChhHHHHHHHHHHHHHHHHHHHhCCCh
Confidence            157999999999999973    333  3569999999999876522 2223457778888999999964

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.30  E-value=0.00011  Score=68.30  Aligned_cols=28  Identities=21%  Similarity=0.205  Sum_probs=25.0

Q ss_pred             CcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          23 IIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        23 iiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      ++|+|++|.||+++.++.++|+|||.|.
T Consensus       186 l~HgDl~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          186 VTHGDACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             EECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             EECCCCCCCcEEEECCcEEEEEcchhcc
Confidence            9999999999999876666799999876

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.25  E-value=0.00018  Score=67.54  Aligned_cols=30  Identities=27%  Similarity=0.268  Sum_probs=25.5

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .+++|+|++|.|||++.++.+.|+||+.+.
T Consensus       183 ~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T 3tm0_A          183 LVFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred             ceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence            458999999999999865556799999875

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.05  E-value=0.0004  Score=68.47  Aligned_cols=31  Identities=23%  Similarity=0.377  Sum_probs=26.3

Q ss_pred             cCCcccCCCCCcEEEccCCC--eEEecccchhh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDH--VKIGDFGLATN   51 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~--vKL~DFGla~~   51 (454)
                      .+++|+|++|.|||++.++.  +.|+||+.|..
T Consensus       216 ~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          216 TSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             CEEECSSCSGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             ceEEeCCCCCCcEEEeCCCCcEEEEECcccccc
Confidence            36899999999999997753  68999998863

>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B*

Probab=96.87  E-value=0.0033  Score=68.59  Aligned_cols=131  Identities=16%  Similarity=0.023  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCcccccccc--ccccc-cEEEEcC-CCCeEeeCCCCCHHHHHHHHHcC--CCCcee
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLT--ATSET-TASVMTR-GGSIVTLPHDLRIPFARYLAQNG--SIVSMK  387 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~--~~~~~-~~~~~d~-~G~~~~Lr~d~T~p~aR~~a~~~--~~~~~k  387 (454)
                      -.+++.++++.+|...||.++.|..|...+.+.  ..... .+++.++ +.+.-+||+.+...+.+.++.|.  +..++|
T Consensus       494 ~~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vr  573 (795)
T 2rhq_B          494 DRQHKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVR  573 (795)
T ss_dssp             HHHHHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeE
Confidence            366788999999999999999999886654331  01234 5788777 44566899999999999998752  257999


Q ss_pred             eEeecCccccCCCCCCccceEEEEEEEEEcCCC-------CcccHHH-HHHHHHHHHHhCCCCCcEE
Q psy7309         388 RYCIDRVFRERRVLGFHPRELYECAFDIVTNTP-------GVLTMGS-LRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       388 ~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~-------~~~~d~e-~~~~~~~~l~~~~~~~~~i  446 (454)
                      +|.+|+|||.+....++ .|+.|.++=+.|...       ....|.. +-.++-.+|+.+|+. +.+
T Consensus       574 lFEiG~Vf~~d~~~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~lG~~-~~~  638 (795)
T 2rhq_B          574 LYEIGRVFFGNGEGELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKLNLE-FSY  638 (795)
T ss_dssp             EEEEEEEEECCCTTSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHHTCC-CEE
T ss_pred             EEEEeeEEecCCcccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHcCCc-EEE
Confidence            99999999964321133 899999998888530       1113444 444555677778874 444

>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B*

Probab=96.21  E-value=0.02  Score=62.24  Aligned_cols=124  Identities=17%  Similarity=0.083  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCccccccc--cccccccEEEEcC-CCCeEeeCCCCCHHHHHHHHHcC--C-CCceee
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLNSL--TATSETTASVMTR-GGSIVTLPHDLRIPFARYLAQNG--S-IVSMKR  388 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~--~~~~~~~~~~~d~-~G~~~~Lr~d~T~p~aR~~a~~~--~-~~~~k~  388 (454)
                      .+++.++++.++...||.++.|-.|...+.+  .......+++.++ +-+.-+||+.+...+.+.++.|.  + ..++|+
T Consensus       491 ~~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrl  570 (785)
T 1b7y_B          491 PYRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALL  570 (785)
T ss_dssp             HHHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEE
Confidence            5678889999999999999998888665432  1112346788876 44566899999999999998762  2 378999


Q ss_pred             EeecCccccCCCCCCccceEEEEEEEEEcCCC------CcccHHH-HHHHHHHHHHhCCCCCcEEE
Q psy7309         389 YCIDRVFRERRVLGFHPRELYECAFDIVTNTP------GVLTMGS-LRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       389 ~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~------~~~~d~e-~~~~~~~~l~~~~~~~~~i~  447 (454)
                      |.+|+||| +       .|+.|.++=+.|...      ....|.. +-.++-.+|+.+|+ ++.++
T Consensus       571 FEiG~Vf~-~-------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~lgi-~~~~~  627 (785)
T 1b7y_B          571 FEVGRVFR-E-------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARLGL-AFRVE  627 (785)
T ss_dssp             EEEEEEES-S-------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHHTC-CCEEE
T ss_pred             EEEeeeec-c-------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHcCC-ceEEe
Confidence            99999999 2       799999999999641      1123444 44455557777887 45543

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=96.05  E-value=0.0053  Score=59.33  Aligned_cols=30  Identities=13%  Similarity=0.283  Sum_probs=27.4

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .++||+|++|.|||++.++.+.|+||+.+.
T Consensus       222 ~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~  251 (346)
T 2q83_A          222 PNLCHQDYGTGNTLLGENEQIWVIDLDTVS  251 (346)
T ss_dssp             CCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred             CceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence            579999999999999878889999999875

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=95.80  E-value=0.0061  Score=58.38  Aligned_cols=30  Identities=33%  Similarity=0.423  Sum_probs=25.7

Q ss_pred             CCcccCCCCCcEEEcc--CCCeEEecccchhh
Q psy7309          22 GIIHRDLKPVNIFIDY--EDHVKIGDFGLATN   51 (454)
Q Consensus        22 giiHrDLKp~NILl~~--~~~vKL~DFGla~~   51 (454)
                      .++|+|++|.||+++.  .+.+.|+||+.+..
T Consensus       192 ~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~  223 (304)
T 3sg8_A          192 CLIHNDFSSDHILFDTEKNTICGIIDFGDAAI  223 (304)
T ss_dssp             EEECSCCCGGGEEEETTTTEEEEECCCTTCEE
T ss_pred             eeEeCCCCcccEEEeCCCCCEEEEEeCCCCcc
Confidence            4799999999999998  45678999998863

>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}

Probab=94.85  E-value=0.014  Score=58.64  Aligned_cols=32  Identities=19%  Similarity=0.342  Sum_probs=27.8

Q ss_pred             HHcCCcccCCCCCcEEEccCCCeEEecccchhh
Q psy7309          19 HSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus        19 H~~giiHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      +...++|+|++|.|||++.++ ++|+||+.+..
T Consensus       230 ~~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~  261 (420)
T 2pyw_A          230 RAQALIHGDLHTGSVMVTQDS-TQVIDPEFSFY  261 (420)
T ss_dssp             BCCEEECSCCSGGGEEECSSC-EEECCCTTCEE
T ss_pred             CCCeEEecCCCCCcEEEeCCC-CEEEeCccccc
Confidence            356799999999999998776 99999998763

>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A

Probab=94.82  E-value=0.03  Score=56.29  Aligned_cols=93  Identities=8%  Similarity=0.036  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHHHHhc--------CCccccC-CCcccccc-ccc----c------ccccEEEEcCCCCeEeeCCCCCHHHH
Q psy7309         315 LESTGDKLRRIFQLH--------GGAHFQT-PLLTPLNS-LTA----T------SETTASVMTRGGSIVTLPHDLRIPFA  374 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~--------G~~~i~t-p~le~~~~-~~~----~------~~~~~~~~d~~G~~~~Lr~d~T~p~a  374 (454)
                      ...+.+.|+++|...        ||.++.+ |.++.... |..    .      ...+|.+ +   ...+||...++-.+
T Consensus        50 l~~~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi-~---~~~vLRThts~~~~  125 (415)
T 3cmq_A           50 LWLIKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYL-N---RTHMLRAHTSAHQW  125 (415)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBS-S---SSEEECSSGGGGHH
T ss_pred             HHHHHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEe-c---CCeEEcCCCcHHHH
Confidence            567777777777776        9999998 77764332 211    0      1234444 2   34899999999999


Q ss_pred             HHHHHcCCCCceeeEeecCccccCCCCCCccceEEEEE-EEE
Q psy7309         375 RYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECA-FDI  415 (454)
Q Consensus       375 R~~a~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g-~ei  415 (454)
                      |.+..+   .| |++.+|+|||.+.....++.+|.|.. +-+
T Consensus       126 ~~l~~~---~~-k~~~~G~VyR~D~~da~h~n~fhQ~egv~l  163 (415)
T 3cmq_A          126 DLLHAG---LD-AFLVVGDVYRRDQIDSQHYPIFHQLEAVRL  163 (415)
T ss_dssp             HHHHTT---CS-EEEEEEEEECCCCCBTTBCSEEEEEEEEEE
T ss_pred             HHHHHC---CC-CEEEeeeEEeccchhhhhhHHhcCCCcEEE
Confidence            998754   34 99999999999877788899999874 444

>3pco_B Phenylalanyl-tRNA synthetase, beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli}

Probab=94.08  E-value=0.13  Score=56.07  Aligned_cols=129  Identities=9%  Similarity=-0.067  Sum_probs=84.0

Q ss_pred             HHHHHHHHHhcCCccccCCCccccccccc--cccccEEEEcC-CCCeEeeCCCCCHHHHHHHHHcCC--CCceeeEeecC
Q psy7309         319 GDKLRRIFQLHGGAHFQTPLLTPLNSLTA--TSETTASVMTR-GGSIVTLPHDLRIPFARYLAQNGS--IVSMKRYCIDR  393 (454)
Q Consensus       319 ~~~l~~~f~~~G~~~i~tp~le~~~~~~~--~~~~~~~~~d~-~G~~~~Lr~d~T~p~aR~~a~~~~--~~~~k~~y~g~  393 (454)
                      .++++..+...||.|+.|-+|...+.+..  ...+.+++.++ +-+.-+||+.+...+-..++.|.+  ..++|+|.+|+
T Consensus       495 ~~~~r~~l~~~G~~Evitysf~~~~~~~~~~~~~~~v~l~NPis~e~svmRtsLlpgLL~~~~~N~~r~~~~v~lFEiG~  574 (795)
T 3pco_B          495 LKRVKTLLNDKGYQEVITYSFVDPKVQQMIHPGVEALLLPSPISVEMSAMRLSLWTGLLATVVYNQNRQQNRVRIFESGL  574 (795)
T ss_dssp             HHHHHHHHHHTTCEECCCCSEECHHHHHHHSSSCCCCBCSSCSCSTTCEECSSSHHHHHHHHHHHHTSSCCCCEEEEEEE
T ss_pred             HHHHHHHHHHCCCeeeeccCcCCHHHHHhhCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCccEEEeee
Confidence            44555566666777776666654433211  12345666666 445678999999999999887633  45799999999


Q ss_pred             ccccCCCCCCccceEEEEEEEEEcCCC-------CcccHHHHHH-HHHHHHHhCCC-CCcEEE
Q psy7309         394 VFRERRVLGFHPRELYECAFDIVTNTP-------GVLTMGSLRR-CLMGSFRRFNY-GNISFA  447 (454)
Q Consensus       394 vfR~~~~~~g~~rE~~Q~g~eiig~~~-------~~~~d~e~~~-~~~~~l~~~~~-~~~~i~  447 (454)
                      ||+.+......++|....++=+.|...       +...|..-+. ++-.+|..+|+ .++.+.
T Consensus       575 Vf~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~dF~dlKg~ve~ll~~lg~~~~~~~~  637 (795)
T 3pco_B          575 RFVPDTQAPLGIRQDLMLAGVICGNRYEEHWNLAKETVDFYDLKGDLESVLDLTGKLNEVEFR  637 (795)
T ss_dssp             EEEECTTSSTTEEEEEEEEEEEESBSSCSCSSSCCCBCCHHHHHHHHHHHTTTSSCCSSCCEE
T ss_pred             EEecCCCcccCcchhheEEEEEECCCcccccccCCCCCCHHHHHHHHHHHHHHcCCCcceEEE
Confidence            998754333457888888888888531       1234555555 45556777886 455554

>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6

Probab=92.61  E-value=0.047  Score=52.37  Aligned_cols=30  Identities=33%  Similarity=0.439  Sum_probs=25.9

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .++||+|++|.|||++.++.+.|+||+.+.
T Consensus       187 ~~liHgDl~~~Nil~~~~~~~~lIDf~~a~  216 (322)
T 2ppq_A          187 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  216 (322)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccCCCCCCccCEEEeCCceEEEecchhcc
Confidence            479999999999999876556899999875

>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6

Probab=92.58  E-value=0.068  Score=51.36  Aligned_cols=28  Identities=21%  Similarity=0.107  Sum_probs=24.8

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .+++|+|++|.|||++ + .+.|+||+.+.
T Consensus       195 ~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~  222 (328)
T 1zyl_A          195 VLRLHGDCHAGNILWR-D-GPMFVDLDDAR  222 (328)
T ss_dssp             CEECCSSCSGGGEEES-S-SEEECCCTTCC
T ss_pred             eeeeeCCCCcccEeEc-C-CCEEEECCCCC
Confidence            4689999999999998 4 89999999875

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=92.31  E-value=0.063  Score=51.46  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=25.8

Q ss_pred             cCCcccCCCCCcEEEcc---CCCe-EEecccchhh
Q psy7309          21 QGIIHRDLKPVNIFIDY---EDHV-KIGDFGLATN   51 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~---~~~v-KL~DFGla~~   51 (454)
                      ..++|+|++|.||+++.   ++.+ .|+||+.+..
T Consensus       190 ~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~  224 (306)
T 3tdw_A          190 PRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI  224 (306)
T ss_dssp             CEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred             CeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence            36899999999999987   4554 8999998763

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=92.25  E-value=0.046  Score=52.87  Aligned_cols=30  Identities=30%  Similarity=0.338  Sum_probs=26.6

Q ss_pred             cCCcccCCCCCcEEEccC----CCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYE----DHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~----~~vKL~DFGla~   50 (454)
                      .+++|+|+.+.|||++.+    +.+.|+||+.+.
T Consensus       183 ~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~  216 (333)
T 3csv_A          183 MVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAK  216 (333)
T ss_dssp             CEEECSCCSGGGEEECTTSCGGGGEEECCCTTCE
T ss_pred             CeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcC
Confidence            479999999999999874    678999999886

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=91.79  E-value=0.058  Score=52.59  Aligned_cols=30  Identities=13%  Similarity=0.170  Sum_probs=25.7

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      ..++|+|++|.|||++.++.+.|+||+.|.
T Consensus       222 ~~l~HgDl~~~Nil~~~~~~~~vIDwe~a~  251 (357)
T 3ats_A          222 PVLLWGDARVGNVLYRDFQPVAVLDWEMVA  251 (357)
T ss_dssp             CEEECSSCSGGGEEEETTEEEEECCGGGCE
T ss_pred             ceEEeCCCCCCeEEEeCCcEEEEEcccccc
Confidence            479999999999999954457899999876

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=90.59  E-value=0.088  Score=48.92  Aligned_cols=28  Identities=21%  Similarity=0.265  Sum_probs=25.0

Q ss_pred             CcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          23 IIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        23 iiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      ++|+|+.|.|||++..+.+-|+||+.+.
T Consensus       195 l~HGDl~~~Nil~~~~~~~~viDwe~a~  222 (272)
T 4gkh_A          195 VTHGDFSLDNLIFDEGKLIGCIDVGRVG  222 (272)
T ss_dssp             EECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEcCCCCCCeEEEECCeEEEEEECcccc
Confidence            7999999999999977667799999876

>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*

Probab=90.36  E-value=0.2  Score=49.06  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=24.4

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .+++|+|++|.|||++.++ +.|+||..|.
T Consensus       212 ~~l~HgDl~~~Nil~~~~~-~~lID~e~a~  240 (369)
T 3c5i_A          212 IVFCHNDLQENNIINTNKC-LRLIDFEYSG  240 (369)
T ss_dssp             EEEECSCCCGGGEEECC-C-EEECCCTTCE
T ss_pred             eEEEeCCCCcccEEecCCc-EEEEEecCCC
Confidence            3699999999999998554 8999998775

>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*

Probab=89.16  E-value=0.17  Score=49.28  Aligned_cols=31  Identities=19%  Similarity=0.294  Sum_probs=27.4

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchhh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLATN   51 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~~   51 (454)
                      .+++|+|+.|.||+++.++.+.|+||+.+..
T Consensus       206 ~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~  236 (339)
T 3i1a_A          206 YVLCHSDIHAGNVLVGNEESIYIIDWDEPML  236 (339)
T ss_dssp             CEEECSCCCGGGEEECGGGCEEECCCSSCEE
T ss_pred             ceeEeCCCCcCCEEEeCCCeEEEEECCCCee
Confidence            3699999999999999878899999987763

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=88.64  E-value=0.25  Score=48.82  Aligned_cols=30  Identities=30%  Similarity=0.372  Sum_probs=25.6

Q ss_pred             HcCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          20 SQGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        20 ~~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      ...++|+|++|.|||++.+ .++|+||..+.
T Consensus       226 ~~~L~HGDl~~~Nil~~~~-~~~lID~e~a~  255 (397)
T 2olc_A          226 AETLIHGDLHTGSIFASEH-ETKVIDPEFAF  255 (397)
T ss_dssp             CCEEECSCCSGGGEEECSS-CEEECCCTTCE
T ss_pred             CCceeeCCCCcCcEEEeCC-CeEEEeCcccc
Confidence            3579999999999999865 48999998765

>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}

Probab=86.75  E-value=0.25  Score=50.28  Aligned_cols=15  Identities=33%  Similarity=0.317  Sum_probs=14.2

Q ss_pred             CCcccCCCCCcEEEc
Q psy7309          22 GIIHRDLKPVNIFID   36 (454)
Q Consensus        22 giiHrDLKp~NILl~   36 (454)
                      .++|+|+.+.|||++
T Consensus       291 v~cHnDl~~gNIL~~  305 (458)
T 2qg7_A          291 VLCHCDLLSSNIINT  305 (458)
T ss_dssp             EEECSCCCGGGEEEC
T ss_pred             eEEecCCCCCcEEee
Confidence            589999999999998

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=86.23  E-value=0.24  Score=49.89  Aligned_cols=29  Identities=28%  Similarity=0.397  Sum_probs=24.6

Q ss_pred             CCcccCCCCCcEEEccC----------------------------CCeEEecccchh
Q psy7309          22 GIIHRDLKPVNIFIDYE----------------------------DHVKIGDFGLAT   50 (454)
Q Consensus        22 giiHrDLKp~NILl~~~----------------------------~~vKL~DFGla~   50 (454)
                      .++|+|+.+.|||++.+                            +.+.|+||..|.
T Consensus       250 v~~H~Dl~~gNiL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lIDfEya~  306 (429)
T 1nw1_A          250 TFCHNDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYAS  306 (429)
T ss_dssp             EEECSCCCGGGEEEEC------------------------------CCEECCCTTCE
T ss_pred             EEEeCCCCCCeEEeeCCccccccccccccccccccccccccccCCCeEEEEecccCC
Confidence            58999999999999875                            678999998876

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=85.64  E-value=0.3  Score=46.30  Aligned_cols=28  Identities=21%  Similarity=0.194  Sum_probs=24.5

Q ss_pred             CCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          22 GIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        22 giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .++|+|+.|.||+ ..++.+.|+||..|.
T Consensus       174 ~l~HgDl~~~Nil-~~~~~~~lID~e~a~  201 (301)
T 3dxq_A          174 AACHCDPLCENFL-DTGERMWIVDWEYSG  201 (301)
T ss_dssp             EEECSCCCGGGEE-ECSSCEEECCCTTCE
T ss_pred             eeeccCCCcCCEE-ECCCCEEEEeccccc
Confidence            4899999999999 557789999999876

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=83.38  E-value=1.1  Score=40.91  Aligned_cols=44  Identities=16%  Similarity=0.175  Sum_probs=31.2

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEec
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGD   45 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~D   45 (454)
                      +++|.++.|.+.+|.-+-. ..-..+=+-|..|++..+|+|...+
T Consensus        49 EqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~   93 (229)
T 2yle_A           49 EQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAP   93 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECC
T ss_pred             HHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceeccc
Confidence            4799999999999887632 1111233346889999999887663

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=83.36  E-value=0.48  Score=46.96  Aligned_cols=29  Identities=28%  Similarity=0.418  Sum_probs=26.3

Q ss_pred             CCcccCCCCCcEEEccC----CCeEEecccchh
Q psy7309          22 GIIHRDLKPVNIFIDYE----DHVKIGDFGLAT   50 (454)
Q Consensus        22 giiHrDLKp~NILl~~~----~~vKL~DFGla~   50 (454)
                      .++|+|+.+.||+++.+    +.+.|+||..|.
T Consensus       221 ~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~  253 (379)
T 3feg_A          221 VFCHNDIQEGNILLLSEPENADSLMLVDFEYSS  253 (379)
T ss_dssp             EEECSCCCGGGEEEESCC---CCEEECCCTTCE
T ss_pred             EEEcCCCCCCeEEEcCCCCccCcEEEEecccCC
Confidence            58999999999999876    689999999886

>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*

Probab=80.69  E-value=0.63  Score=46.28  Aligned_cols=29  Identities=21%  Similarity=0.284  Sum_probs=24.7

Q ss_pred             CCcccCCCCCcEEEc------cCCCeEEecccchh
Q psy7309          22 GIIHRDLKPVNIFID------YEDHVKIGDFGLAT   50 (454)
Q Consensus        22 giiHrDLKp~NILl~------~~~~vKL~DFGla~   50 (454)
                      .++|+|+.+.|||+.      .++.+.++||..|.
T Consensus       245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~  279 (401)
T 3g15_A          245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS  279 (401)
T ss_dssp             EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCE
T ss_pred             eeEEecCCCCeEEEecCcccCcCCeEEEechHhcc
Confidence            368999999999993      45679999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	454
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	5e-19
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-18
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	5e-18
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	2e-17
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	3e-16
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	1e-15
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	3e-15
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	3e-15
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	6e-15
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	7e-15
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	9e-15
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	1e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-14
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	2e-14
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	2e-14
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	8e-14
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	1e-13
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-13
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	3e-13
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	5e-13
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	7e-13
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	8e-13
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	9e-13
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	9e-13
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-12
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-12
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	2e-12
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	3e-12
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-12
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-12
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	4e-12
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	6e-12
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	7e-12
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-12
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	7e-12
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-11
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	2e-11
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-11
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-11
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-11
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	3e-11
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	4e-11
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	5e-11
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	1e-10
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-10
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	2e-10
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	2e-10
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	2e-10
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	3e-10
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	5e-10
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	7e-10
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	9e-10
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	1e-09
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	1e-09
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	2e-09
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	3e-09
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-09
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	7e-09
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	7e-09
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-08
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	2e-08
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	4e-08
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	1e-07
d1usya_	275	d.104.1.1 (A:) ATP phosphoribosyltransferase regul	1e-06
d1z7ma1	318	d.104.1.1 (A:6-323) ATP phosphoribosyltransferase	1e-05

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.7 bits (209), Expect = 5e-19
 Identities = 42/231 (18%), Positives = 72/231 (31%), Gaps = 72/231 (31%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +   + ++ ++ L+++H   IIHRDLK  NI    +  +K+ DFG++             
Sbjct: 111 QIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAK----------- 159

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQ-QK 121
                                    +GT  + APE+       M      + Y  K    
Sbjct: 160 --------------NTRTIQRRDSFIGTPYWMAPEV------VMCETSKDRPYDYKADVW 199

Query: 122 AFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVY 181
           +  + ++ +                             P    N  + L K  KS P   
Sbjct: 200 SLGITLIEMAEIEP------------------------PHHELNPMRVLLKIAKSEPPTL 235

Query: 182 REWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
            +           +   SNF+ FL      K CL  +   R ++ Q L  P
Sbjct: 236 AQP----------SRWSSNFKDFL------KKCLEKNVDARWTTSQLLQHP 270

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (208), Expect = 1e-18
 Identities = 39/242 (16%), Positives = 79/242 (32%), Gaps = 59/242 (24%)

Query: 3   RAWRLLREIIEGLSHIHSQ-GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLA 61
              ++   +I+GL+++  +  I+HRD+KP NI ++    +K+ DFG++  +         
Sbjct: 105 ILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQL--------- 155

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHGVKA--------MYNQF 110
                              D+     VGT  Y +PE      + V++        +    
Sbjct: 156 ------------------IDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMA 197

Query: 111 TPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSL 170
                    +        + L      +V  D  +T    +   R  +     S    ++
Sbjct: 198 V-------GRYPIPPPDAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAI 250

Query: 171 QKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC 230
            +      +       S  +S         FQ F+        CL  +P++R   +Q + 
Sbjct: 251 FELLDYIVNEPPPKLPSGVFS-------LEFQDFV------NKCLIKNPAERADLKQLMV 297

Query: 231 QP 232
             
Sbjct: 298 HA 299

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.6 bits (201), Expect = 5e-18
 Identities = 40/231 (17%), Positives = 70/231 (30%), Gaps = 82/231 (35%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           R    + E+   LS+ HS+ +IHRD+KP N+ +     +KI DFG + +           
Sbjct: 107 RTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHA---------- 156

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQ-NYFSKQQK 121
                              +  T   GT  Y  PE+              + + +S    
Sbjct: 157 -----------------PSSRRTTLCGTLDYLPPEM------IEGRMHDEKVDLWS---- 189

Query: 122 AFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVY 181
                      G L  E    +P               P   +  Q++ ++  +      
Sbjct: 190 ----------LGVLCYEFLVGKP---------------PFEANTYQETYKRISRVEF--- 221

Query: 182 REWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                     T  + +    +  +         L H+PS+RP   + L  P
Sbjct: 222 ----------TFPDFVTEGARDLI------SRLLKHNPSQRPMLREVLEHP 256

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.0 bits (199), Expect = 2e-17
 Identities = 46/230 (20%), Positives = 75/230 (32%), Gaps = 43/230 (18%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
                L +I+ GL +IHS  ++HRDLKP N+ ++    +KI DFGLA      H      
Sbjct: 110 HICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH------ 163

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                            H    T  V T  Y APE+  +                   K+
Sbjct: 164 ----------------DHTGFLTEYVATRWYRAPEIMLNSKGYT--------------KS 193

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
             +  +  +   + +       K   +  ++I    G  +  ++   +    ++      
Sbjct: 194 IDIWSVGCILAEMLSNRPIFPGKHYLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLP 253

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                  W+ +  N  S     L         L  +P KR   EQ L  P
Sbjct: 254 HKNKV-PWNRLFPNADSKALDLL------DKMLTFNPHKRIEVEQALAHP 296

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.6 bits (188), Expect = 3e-16
 Identities = 44/229 (19%), Positives = 70/229 (30%), Gaps = 72/229 (31%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARE 63
           A R   +++ G+ ++H  GI HRD+KP N+ +D  D++KI DFGLAT             
Sbjct: 105 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN-------- 156

Query: 64  LTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAF 123
                          + +       GT  Y APE               + + ++    +
Sbjct: 157 ---------------NRERLLNKMCGTLPYVAPE-----------LLKRREFHAEPVDVW 190

Query: 124 YVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYRE 183
              I  VL   L  E+  D+P    +                               Y +
Sbjct: 191 SCGI--VLTAMLAGELPWDQPSDSCQE------------------------------YSD 218

Query: 184 WRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           W+    +      I S     L         L  +PS R +        
Sbjct: 219 WKEKKTYLNPWKKIDSAPLALL------HKILVENPSARITIPDIKKDR 261

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.6 bits (183), Expect = 1e-15
 Identities = 46/225 (20%), Positives = 79/225 (35%), Gaps = 67/225 (29%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +   + R+  +G+ ++H++ IIHRDLK  NIF+  +  VKIGDFGLAT   +        
Sbjct: 105 KLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSR-------- 156

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                          +S         G+ L+ APE+     K  Y+     + ++     
Sbjct: 157 ---------------WSGSHQFEQLSGSILWMAPEVIRMQDKNPYS--FQSDVYA----- 194

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
           F + +  ++ G L                        P +  N +  +         +  
Sbjct: 195 FGIVLYELMTGQL------------------------PYSNINNRDQIIF-------MVG 223

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
               S + S VR+N     +  +        CL     +RP   Q
Sbjct: 224 RGYLSPDLSKVRSNCPKAMKRLM------AECLKKKRDERPLFPQ 262

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 73.9 bits (181), Expect = 3e-15
 Identities = 42/230 (18%), Positives = 72/230 (31%), Gaps = 77/230 (33%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
               +    ++GL+++HS  +IHRD+K  NI +     VK+GDFG A+ +          
Sbjct: 116 EIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIM---------- 165

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                                    VGT  + APE+     +  Y+     + +S     
Sbjct: 166 -------------------APANSFVGTPYWMAPEVILAMDEGQYD--GKVDVWS----- 199

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
                     G    E+ + +P               P    N   +L    ++     +
Sbjct: 200 ---------LGITCIELAERKP---------------PLFNMNAMSALYHIAQNESPALQ 235

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                        +    F++F+        CL   P  RP+SE  L   
Sbjct: 236 S-----------GHWSEYFRNFV------DSCLQKIPQDRPTSEVLLKHR 268

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.7 bits (180), Expect = 3e-15
 Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 54/233 (23%)

Query: 3   RAWRLLREIIEGLSHIHSQ--------GIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQ 54
              +L      GL+H+H +         I HRDLK  NI +       I D G       
Sbjct: 101 GMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLG------- 153

Query: 55  KHAGPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQN 114
                         L     +A  + D +   +VGT  Y APE+    +   + +     
Sbjct: 154 --------------LAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFK-- 197

Query: 115 YFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQ 174
                 +A    +  V W   +           E+ +                + +   Q
Sbjct: 198 ------RADIYAMGLVFWEIAR---RCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQ 248

Query: 175 KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
           K  P++   W+S      +           ++       C   + + R ++ +
Sbjct: 249 KLRPNIPNRWQSCEALRVMAK---------IMR-----ECWYANGAARLTALR 287

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.0 bits (178), Expect = 6e-15
 Identities = 38/236 (16%), Positives = 75/236 (31%), Gaps = 49/236 (20%)

Query: 1   MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPL 60
           +    R+++ ++ GL +IH   I+HRD+K  N+ I  +  +K+ DFGLA           
Sbjct: 116 LSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAF-------- 167

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQ- 119
                        S A  S    +T +V T  Y  PE               +  +    
Sbjct: 168 -------------SLAKNSQPNRYTNRVVTLWYRPPE-----------LLLGERDYGPPI 203

Query: 120 -QKAFYVEILRVLWGY--LKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKS 176
                   +  +      ++    + +   + +L  +I  E  P+  +       +  K 
Sbjct: 204 DLWGAGCIMAEMWTRSPIMQGNTEQHQLALISQLCGSITPEVWPNVDNYELYEKLELVKG 263

Query: 177 PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                ++   ++                +         L  DP++R  S+  L   
Sbjct: 264 QKRKVKDRLKAYVRD-------PYALDLI------DKLLVLDPAQRIDSDDALNHD 306

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.6 bits (177), Expect = 7e-15
 Identities = 37/230 (16%), Positives = 69/230 (30%), Gaps = 49/230 (21%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
                +   ++GL ++H   I+HRDLKP N+ +D    +K+ DFG               
Sbjct: 101 HIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFG--------------- 145

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                      + +F S + ++T QV T  Y APE                  +      
Sbjct: 146 ----------LAKSFGSPNRAYTHQVVTRWYRAPE-----------LLFGARMYGVGVDM 184

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
           +    +  +   L   V      +  +    I    G  T    ++        P  V  
Sbjct: 185 WA---VGCILAELLLRVPFLPGDSDLDQLTRIFETLGTPT----EEQWPDMCSLPDYVTF 237

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           +         + +    +    +      +     +P  R ++ Q L   
Sbjct: 238 KSFPGIPLHHIFSAAGDDLLDLI------QGLFLFNPCARITATQALKMK 281

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 9e-15
 Identities = 41/230 (17%), Positives = 76/230 (33%), Gaps = 47/230 (20%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
                L ++++GL   HS+ ++HRDLKP N+ I+    +K+ +FGLA             
Sbjct: 102 IVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLA------------- 148

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                        AF      ++ +V T  Y  P++                 +S     
Sbjct: 149 ------------RAFGIPVRCYSAEVVTLWYRPPDV-----------LFGAKLYSTSIDM 185

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
           +      +      A         +++    I R  G  T        +     P   Y 
Sbjct: 186 WSAGC--IFAELANAGRPLFPGNDVDDQLKRIFRLLGTPTEEQWPSMTKLPDYKP---YP 240

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
            + ++     V   + +  +  L      +  L  +P +R S+E+ L  P
Sbjct: 241 MYPATTSLVNVVPKLNATGRDLL------QNLLKCNPVQRISAEEALQHP 284

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 71.8 bits (175), Expect = 1e-14
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 56/234 (23%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
            A   L +++ G+++ H + ++HRDLKP N+ I+ E  +KI DFGLA             
Sbjct: 101 TAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARA----------- 149

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                         F      +T ++ T  Y AP++                    ++ +
Sbjct: 150 --------------FGIPVRKYTHEIVTLWYRAPDV----------------LMGSKKYS 179

Query: 123 FYVEILRVLWGYLKAEVYKDRP----KTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPP 178
             ++I     G + AE+    P     +  +    I R  G     N     +  +  P 
Sbjct: 180 TTIDIWS--VGCIFAEMVNGTPLFPGVSEADQLMRIFRILGTPNSKNWPNVTELPKYDPN 237

Query: 179 SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
               E      W +    +  +    L         L  DP++R +++Q L   
Sbjct: 238 FTVYE---PLPWESFLKGLDESGIDLL------SKMLKLDPNQRITAKQALEHA 282

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 71.6 bits (175), Expect = 1e-14
 Identities = 35/230 (15%), Positives = 62/230 (26%), Gaps = 69/230 (30%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
              +++R ++E +  +H   I+HRDLKP NI +D + ++K+ DFG +             
Sbjct: 111 ETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFS------------- 157

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                                     GT  Y APE                   +     
Sbjct: 158 -------------CQLDPGEKLREVCGTPSYLAPE-----------IIECSMNDNHPGYG 193

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
             V++     G +   +    P               P         L+           
Sbjct: 194 KEVDMWST--GVIMYTLLAGSP---------------PFWHRKQMLMLRMIMSGNYQFGS 236

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                       ++     +  +         L   P KR ++E+ L  P
Sbjct: 237 P---------EWDDYSDTVKDLV------SRFLVVQPQKRYTAEEALAHP 271

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 2e-14
 Identities = 43/232 (18%), Positives = 74/232 (31%), Gaps = 77/232 (33%)

Query: 2   GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLA 61
           G+   + RE ++ L  +HS  +IHRD+K  NI +  +  VK+ DFG    I         
Sbjct: 116 GQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP------- 168

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQ-NYFSKQQ 120
                               +  +  VGT  + APE            + P+ + +S   
Sbjct: 169 ------------------EQSKRSTMVGTPYWMAPE------VVTRKAYGPKVDIWS--- 201

Query: 121 KAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSV 180
                       G +  E+ +  P               P    N  ++L     +    
Sbjct: 202 -----------LGIMAIEMIEGEP---------------PYLNENPLRALYLIATNGTPE 235

Query: 181 YREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
            +              + + F+ FL        CL+ D  KR S+++ L   
Sbjct: 236 LQNPE----------KLSAIFRDFL------NRCLDMDVEKRGSAKELLQHQ 271

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 2e-14
 Identities = 46/232 (19%), Positives = 79/232 (34%), Gaps = 60/232 (25%)

Query: 5   WRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAREL 64
             ++ +++ GL  +HS  ++HRDLKP NI +     +K+ DFGLA               
Sbjct: 119 KDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLAR-------------- 164

Query: 65  TGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFY 124
                        YS   + T  V T  Y AP                     +   A  
Sbjct: 165 ------------IYSFQMALTSVVVTLWYRAP-----------------EVLLQSSYATP 195

Query: 125 VEILRVLWGYLKAEVYKDRP----KTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSV 180
           V++     G + AE+++ +P     +  +    I    G     +  + +     + P  
Sbjct: 196 VDLW--SVGCIFAEMFRRKPLFRGSSDVDQLGKILDVIGLPGEEDWPRDV-----ALPRQ 248

Query: 181 YREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
               +S+        +I    +  L        CL  +P+KR S+   L  P
Sbjct: 249 AFHSKSAQPIEKFVTDIDELGKDLL------LKCLTFNPAKRISAYSALSHP 294

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.8 bits (170), Expect = 8e-14
 Identities = 34/225 (15%), Positives = 63/225 (28%), Gaps = 73/225 (32%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
                  ++ +G+  +  +  +HRDL   N+ + +   VKI DFGLA +I+         
Sbjct: 165 DLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSD------- 217

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                           S+            + APE            +T ++        
Sbjct: 218 ----------------SNYVVRGNARLPVKWMAPE------SLFEGIYTIKSDVW----- 250

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
                    +G L  E+                    P  G  V  +  K  ++   + +
Sbjct: 251 --------SYGILLWEI--------------FSLGVNPYPGIPVDANFYKLIQNGFKMDQ 288

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
            + ++ E               +      + C   D  KRPS   
Sbjct: 289 PFYATEE-----------IYIIM------QSCWAFDSRKRPSFPN 316

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 43/232 (18%), Positives = 71/232 (30%), Gaps = 77/232 (33%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI--DYEDHVKIGDFGLATNILQKHAGPL 60
            A   +R++ +GL H+H    +H DLKP NI       + +K+ DFGL            
Sbjct: 125 EAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLT----------- 173

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQ 120
                          A      S     GTA +AAPE                     + 
Sbjct: 174 ---------------AHLDPKQSVKVTTGTAEFAAPE-----------------VAEGKP 201

Query: 121 KAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSV 180
             +Y ++     G L   +                    P  G N  ++L+  +    ++
Sbjct: 202 VGYYTDM--WSVGVLSYILLSGLS---------------PFGGENDDETLRNVKSCDWNM 244

Query: 181 YREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                         + I  + + F+      +  L  DP+ R +  Q L  P
Sbjct: 245 DDS---------AFSGISEDGKDFI------RKLLLADPNTRMTIHQALEHP 281

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.9 bits (165), Expect = 3e-13
 Identities = 26/130 (20%), Positives = 51/130 (39%), Gaps = 9/130 (6%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +   +LR I  G+ ++     +HRDL   NI ++     K+ DFGL+  +    + P   
Sbjct: 129 QLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYT 188

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQV-----GTALYAAPELDSHGVKAMYNQFTPQNYFS 117
              G  +P   +          T        G  ++   E+ S+G +  Y   T Q+  +
Sbjct: 189 SALGGKIPIRWTAPEAIQYRKFTSASDVWSYGIVMW---EVMSYG-ERPYWDMTNQDVIN 244

Query: 118 KQQKAFYVEI 127
             ++ + +  
Sbjct: 245 AIEQDYRLPP 254

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 68.2 bits (166), Expect = 3e-13
 Identities = 40/217 (18%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLATNILQKHAGPL 60
                +R+  EGL H+H   I+H D+KP NI  + +    VKI DFGLAT +       +
Sbjct: 128 EVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKV 187

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYA-----APELDSHGVKAMYNQFTPQNY 115
                 +  P I         T     +G   Y      +P      ++ + N       
Sbjct: 188 TTATAEFAAPEIVDREPVGFYTD-MWAIGVLGYVLLSGLSPFAGEDDLETLQNVKRCDWE 246

Query: 116 FSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKH--------NIRRENGPSTGSNVQ 167
           F +   +      +     L  +  + R    + L+H        N+      S  + ++
Sbjct: 247 FDEDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDHSNLTSRIPSSRYNKIR 306

Query: 168 KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHF 204
           + +++     P+          +S++R +    +Q +
Sbjct: 307 QKIKEKYADWPAPQPAIGRIANFSSLRKHRPQEYQIY 343

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.2 bits (163), Expect = 5e-13
 Identities = 35/225 (15%), Positives = 64/225 (28%), Gaps = 74/225 (32%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
               + R++  G++++  +  +HRDL   N  +     VKI DFGL+ NI          
Sbjct: 141 EQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSA------- 193

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                            +  +         +  PE         YN++T ++       A
Sbjct: 194 ----------------DYYKADGNDAIPIRWMPPES------IFYNRYTTESDVW----A 227

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
           + V +  +    L+           EE+ + +R  N  +   N    L            
Sbjct: 228 YGVVLWEIFSYGLQP----YYGMAHEEVIYYVRDGNILACPENCPLELYNL--------- 274

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                                        + C +  P+ RPS   
Sbjct: 275 ----------------------------MRLCWSKLPADRPSFCS 291

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 7e-13
 Identities = 43/236 (18%), Positives = 69/236 (29%), Gaps = 84/236 (35%)

Query: 3   RAWRLLREIIEGLSHIHSQG-----IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHA 57
              R++ ++   L   H +      ++HRDLKP N+F+D + +VK+GDFGLA        
Sbjct: 110 FVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLA-------- 161

Query: 58  GPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQN-YF 116
                                   +     VGT  Y +PE            +  ++  +
Sbjct: 162 -----------------RILNHDTSFAKAFVGTPYYMSPEQ------MNRMSYNEKSDIW 198

Query: 117 SKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKS 176
           S               G L  E+    P               P T  + ++   K ++ 
Sbjct: 199 S--------------LGCLLYELCALMP---------------PFTAFSQKELAGKIREG 229

Query: 177 PPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                    S                  +         LN     RPS E+ L  P
Sbjct: 230 KFRRIPYRYS------------DELNEII------TRMLNLKDYHRPSVEEILENP 267

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (162), Expect = 8e-13
 Identities = 35/208 (16%), Positives = 67/208 (32%), Gaps = 8/208 (3%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED--HVKIGDFGLATNILQKHAGPL 60
                + ++ E L  +HS  I H D++P NI         +KI +FG A  +       L
Sbjct: 103 EIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRL 162

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYA-----APELDSHGVKAMYNQFTPQNY 115
                 Y  P +      S   +    +GT +Y       P L     + + N    +  
Sbjct: 163 LFTAPEYYAPEVHQHDVVST-ATDMWSLGTLVYVLLSGINPFLAETNQQIIENIMNAEYT 221

Query: 116 FSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQK 175
           F ++               L  +  K R    E L+H   ++      + V ++L+  + 
Sbjct: 222 FDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIERVSTKVIRTLKHRRY 281

Query: 176 SPPSVYREWRSSFEWSTVRNNIKSNFQH 203
               + ++       + +        Q 
Sbjct: 282 YHTLIKKDLNMVVSAARISCGGAIRSQK 309

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 9e-13
 Identities = 40/234 (17%), Positives = 70/234 (29%), Gaps = 83/234 (35%)

Query: 3   RAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGP 59
                 R+I++GL  +H++   IIHRDLK  NIFI      VKIGD GLAT         
Sbjct: 113 VLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT--------- 163

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQ-NYFSK 118
                                 +     +GT  + APE+          ++    + ++ 
Sbjct: 164 ------------------LKRASFAKAVIGTPEFMAPEM-------YEEKYDESVDVYA- 197

Query: 119 QQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPP 178
               F + +L +                             P +       +        
Sbjct: 198 ----FGMCMLEMATSEY------------------------PYSECQNAAQI-------- 221

Query: 179 SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
             YR   S  + ++         +  +      + C+  +  +R S +  L   
Sbjct: 222 --YRRVTSGVKPASFDKVAIPEVKEII------EGCIRQNKDERYSIKDLLNHA 267

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 9e-13
 Identities = 50/234 (21%), Positives = 77/234 (32%), Gaps = 45/234 (19%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           R   LL +++ G+ H+HS GIIHRDLKP NI +  +  +KI DFGLA             
Sbjct: 120 RMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLAR------------ 167

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPEL---DSHGVKAMYNQFTPQNY-FSK 118
                                 T  V T  Y APE+     +                 +
Sbjct: 168 --------------TAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVR 213

Query: 119 QQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPP 178
            +  F        W  +  ++    P+ +++L+  +R         N  ++  K+     
Sbjct: 214 HKILFPGRDYIDQWNKVIEQLGTPCPEFMKKLQPTVR---------NYVENRPKYAGLTF 264

Query: 179 SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                       S       S  +  L         L  DP+KR S +  L  P
Sbjct: 265 PKLFPDSLFPADSEHNKLKASQARDLL------SKMLVIDPAKRISVDDALQHP 312

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.7 bits (162), Expect = 1e-12
 Identities = 22/50 (44%), Positives = 31/50 (62%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
                  EII GL H+H++ +++RDLKP NI +D   HV+I D GLA + 
Sbjct: 108 DMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDF 157

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (160), Expect = 1e-12
 Identities = 47/234 (20%), Positives = 83/234 (35%), Gaps = 52/234 (22%)

Query: 1   MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPL 60
           +      L ++++GL+  HS  ++HRDLKP N+ I+ E  +K+ DFGLA           
Sbjct: 101 LPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLA----------- 149

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQ 120
                          AF     ++T +V T  Y APE+                  +   
Sbjct: 150 --------------RAFGVPVRTYTHEVVTLWYRAPEILLGC---------KYYSTAVDI 186

Query: 121 KAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG--PSTGSNVQKSLQKFQKSPP 178
            +       ++              +  +    I R  G           S+  ++ S P
Sbjct: 187 WSLGCIFAEMVTRRALF-----PGDSEIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFP 241

Query: 179 SVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
              R+     ++S V   +  + +  L         L++DP+KR S++  L  P
Sbjct: 242 KWARQ-----DFSKVVPPLDEDGRSLL------SQMLHYDPNKRISAKAALAHP 284

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.5 bits (159), Expect = 2e-12
 Identities = 37/200 (18%), Positives = 71/200 (35%), Gaps = 13/200 (6%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGP 59
            A  +++ I E + ++HS  I HRD+KP N+    +     +K+ DFG A      ++  
Sbjct: 112 EASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLT 171

Query: 60  LARELTGYILPPIDSTAFYS--HDTSHTGQV------GTALYAAPELDSHGVKAMYNQFT 111
                  Y+ P +     Y    D    G +      G   + +    +           
Sbjct: 172 TPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTRIRM 231

Query: 112 PQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG--PSTGSNVQKS 169
            Q  F   + +   E +++L   L       R    E + H    ++   P T  +  + 
Sbjct: 232 GQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRV 291

Query: 170 LQKFQKSPPSVYREWRSSFE 189
           L++ ++    V  E  S+  
Sbjct: 292 LKEDKERWEDVKEEMTSALA 311

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (159), Expect = 3e-12
 Identities = 38/231 (16%), Positives = 66/231 (28%), Gaps = 50/231 (21%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLA 61
                + ++   L++IHS GI HRD+KP N+ +D +   +K+ DFG A  +++       
Sbjct: 123 YVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSY 182

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQK 121
                Y  P +   A     +      G  L             +        +      
Sbjct: 183 ICSRYYRAPELIFGATDYTSSIDVWSAGCVLA-----------ELLLGQPI--FPGDSGV 229

Query: 122 AFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVY 181
              VEI++VL    + ++ +  P   E                          K P    
Sbjct: 230 DQLVEIIKVLGTPTREQIREMNPNYTEF-------------------------KFPQIKA 264

Query: 182 REWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
             W   F     R                    L + P+ R +  +     
Sbjct: 265 HPWTKVF-----RPRTPPEAIALC------SRLLEYTPTARLTPLEACAHS 304

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.4 bits (156), Expect = 3e-12
 Identities = 41/227 (18%), Positives = 65/227 (28%), Gaps = 72/227 (31%)

Query: 1   MGRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPL 60
           +G   R   ++ EG+ ++ S+  IHRDL   N+ +   D VKIGDFGL   + Q      
Sbjct: 110 LGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND---- 165

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQ 120
                              H      +     + APE            F+         
Sbjct: 166 ------------------DHYVMQEHRKVPFAWCAPES------LKTRTFSH-------- 193

Query: 121 KAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSV 180
                           ++ +     TL E+         P  G N  + L K  K    +
Sbjct: 194 ---------------ASDTWMF-GVTLWEM---FTYGQEPWIGLNGSQILHKIDKEGERL 234

Query: 181 YREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
            R             +   +  + +        C  H P  RP+   
Sbjct: 235 PRP-----------EDCPQDIYNVM------VQCWAHKPEDRPTFVA 264

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 43/234 (18%), Positives = 63/234 (26%), Gaps = 76/234 (32%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
                  EI+  L ++H +GIIHRDLKP NI ++ + H++I DFG A             
Sbjct: 109 CTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTA------------- 155

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                        +  S        VGTA Y +PEL               +       A
Sbjct: 156 ----------KVLSPESKQARANSFVGTAQYVSPEL------LTEKSACKSSDLW----A 195

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
               I +++ G                          P    N     QK  K       
Sbjct: 196 LGCIIYQLVAGLP------------------------PFRAGNEYLIFQKIIKLEYD--- 228

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE 236
                              +  +      +  L  D +KR   E+         
Sbjct: 229 ----------FPEKFFPKARDLV------EKLLVLDATKRLGCEEMEGYGPLKA 266

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 64.9 bits (157), Expect = 4e-12
 Identities = 38/231 (16%), Positives = 75/231 (32%), Gaps = 41/231 (17%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLA 61
                + EI++ L + HS GI+HRD+KP N+ ID+E   +++ D+GLA            
Sbjct: 130 DIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAE----------- 178

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQK 121
                          FY     +  +V +  +  PEL        Y  +           
Sbjct: 179 ---------------FYHPGQEYNVRVASRYFKGPELLVD-----YQMYDYSLDMWSLGC 218

Query: 122 AFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVY 181
                ++     +       D+   + ++       +     +   +   +F        
Sbjct: 219 MLA-SMIFRKEPFFHGHDNYDQLVRIAKVLGTEDLYDYIDKYNI--ELDPRFNDILGRHS 275

Query: 182 REWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           R+    F  S  ++ +      FL         L +D   R ++ + +  P
Sbjct: 276 RKRWERFVHSENQHLVSPEALDFL------DKLLRYDHQSRLTAREAMEHP 320

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 64.4 bits (156), Expect = 6e-12
 Identities = 32/158 (20%), Positives = 65/158 (41%), Gaps = 14/158 (8%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
            A     +I+    ++HS  +I+RDLKP N+ ID + ++++ DFG A  +  +       
Sbjct: 142 HARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGT 201

Query: 63  ELTGYILPPIDSTAFYSH--DTSHTGQV------GTALYAAPELDSHGVKAMYNQFTPQN 114
                + P I  +  Y+   D    G +      G   + A +      K +  +    +
Sbjct: 202 --PEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQPIQIYEKIVSGKVRFPS 259

Query: 115 YFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKH 152
           +FS   K    ++LR L      + + +    + ++K+
Sbjct: 260 HFSSDLK----DLLRNLLQVDLTKRFGNLKNGVNDIKN 293

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.6 bits (154), Expect = 7e-12
 Identities = 27/225 (12%), Positives = 57/225 (25%), Gaps = 73/225 (32%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
               L+ ++  G+ ++     +HRDL   N+ +  + + KI DFGL+  +          
Sbjct: 108 NIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKAL---------- 157

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                        A  ++  + T       + APE  ++           +        +
Sbjct: 158 ------------RADENYYKAQTHGKWPVKWYAPECINYY----------KFSSKSDVWS 195

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
           F V    ++W          R     E+   + +       +   + +            
Sbjct: 196 FGV----LMWEAFSYGQKPYRGMKGSEVTAMLEKGERMGCPAGCPREMYDL--------- 242

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                                          C  +D   RP    
Sbjct: 243 ----------------------------MNLCWTYDVENRPGFAA 259

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 7e-12
 Identities = 45/230 (19%), Positives = 82/230 (35%), Gaps = 49/230 (21%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           R   L+ ++++GL +IH+ GIIHRDLKP N+ ++ +  +KI DFGLA             
Sbjct: 122 RIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQA---------- 171

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                             D+  TG V T  Y APE+  +                +  + 
Sbjct: 172 ------------------DSEMTGYVVTRWYRAPEVILNW--------------MRYTQT 199

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
             +  +  +   +       +     +    I +  G      VQ+      K+      
Sbjct: 200 VDIWSVGCIMAEMITGKTLFKGSDHLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLP 259

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           E     +++++  N      + L      +  L  D  +R ++ + L  P
Sbjct: 260 ELEKK-DFASILTNASPLAVNLL------EKMLVLDAEQRVTAGEALAHP 302

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.0 bits (155), Expect = 7e-12
 Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 13/158 (8%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           RA     EI+  L ++HS+ +++RD+K  N+ +D + H+KI DFGL    +   A     
Sbjct: 106 RARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTF 165

Query: 63  ELT-GYILPPIDSTAFYSH--DTSHTGQV------GTALYAAPELDSHGVKAMYNQFTPQ 113
             T  Y+ P +     Y    D    G V      G   +   + +      +  +    
Sbjct: 166 CGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDHERLFELILMEEIRFP 225

Query: 114 NYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELK 151
              S + K+     L  L      +     P   +E+ 
Sbjct: 226 RTLSPEAKSL----LAGLLKKDPKQRLGGGPSDAKEVM 259

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 29/211 (13%), Positives = 57/211 (27%), Gaps = 39/211 (18%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID-----YEDHVKIGDFGLATNILQKHA 57
                 ++++  +  IH + +++RD+KP N  I        + + + DFG+         
Sbjct: 102 TVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVK------- 154

Query: 58  GPLARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELD------------SHGV-- 103
                            T  +          GTA Y +                + G   
Sbjct: 155 -----------FYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVF 203

Query: 104 -KAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST 162
              +      Q   +   K  Y  I          E+    P+   +  H  R       
Sbjct: 204 MYFLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFYKYMHYARNLA-FDA 262

Query: 163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTV 193
             +       F K    +      +F+W+ +
Sbjct: 263 TPDYDYLQGLFSKVLERLNTTEDENFDWNLL 293

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 2e-11
 Identities = 31/225 (13%), Positives = 54/225 (24%), Gaps = 77/225 (34%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +      ++  G+ ++  +  IHRDL   NI +      KI DFGL+             
Sbjct: 128 QLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSR------------ 175

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                                 T       + A E  ++ V                   
Sbjct: 176 --------------GQEVYVKKTMGRLPVRWMAIESLNYSVYTT---------------- 205

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
                         ++V+      L E+   +     P  G    +  +K  +       
Sbjct: 206 -------------NSDVWSYGV-LLWEI---VSLGGTPYCGMTCAELYEKLPQGYRLEKP 248

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                        N        +      + C    P +RPS  Q
Sbjct: 249 L------------NCDDEVYDLM------RQCWREKPYERPSFAQ 275

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 19/100 (19%), Positives = 39/100 (39%), Gaps = 24/100 (24%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +   + +++ E + ++ S+  +HRDL   N  ++ +  VK+ DFGL+  +L         
Sbjct: 101 QLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD-------- 152

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHG 102
                              TS  G      ++ PE+  + 
Sbjct: 153 ----------------DEYTSSVGSKFPVRWSPPEVLMYS 176

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (151), Expect = 2e-11
 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 8/155 (5%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
            A     E+   L ++HS+ II+RDLKP NI +D   H+KI DFG A  +          
Sbjct: 105 VAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYT--LC 162

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAA-----PELDSHGVKAMYNQFTPQNYFS 117
               YI P + ST  Y+         G  +Y       P  DS+ +K        +  F 
Sbjct: 163 GTPDYIAPEVVSTKPYNKSIDW-WSFGILIYEMLAGYTPFYDSNTMKTYEKILNAELRFP 221

Query: 118 KQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKH 152
                   ++L  L     ++   +     E++K+
Sbjct: 222 PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 256

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 38/225 (16%), Positives = 66/225 (29%), Gaps = 75/225 (33%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +   +  +I EG++ I  +  IHRDL+  NI +      KI DFGLA  I          
Sbjct: 110 KLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED-------- 161

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                           +  T+  G      + APE  ++G   +                
Sbjct: 162 ----------------NEYTAREGAKFPIKWTAPEAINYGTFTI---------------- 189

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
                        K++V+      L E+   +     P  G    + +Q  ++    V  
Sbjct: 190 -------------KSDVW-SFGILLTEI---VTHGRIPYPGMTNPEVIQNLERGYRMVRP 232

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
           +            N        +      + C    P  RP+ + 
Sbjct: 233 D------------NCPEELYQLM------RLCWKERPEDRPTFDY 259

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 3e-11
 Identities = 30/225 (13%), Positives = 59/225 (26%), Gaps = 74/225 (32%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
                  +I +G++++  + ++HRDL   N+ +    HVKI DFGLA  +  +       
Sbjct: 112 YLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE------- 164

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                             +    G      + A E   H        +T Q+       +
Sbjct: 165 ----------------EKEYHAEGGKVPIKWMALESILHR------IYTHQSDVW----S 198

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
           + V +  ++     ++ Y   P    E+   + +             +            
Sbjct: 199 YGVTVWELMTF--GSKPYDGIP--ASEISSILEKGERLPQPPICTIDVYMI--------- 245

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                                          C   D   RP   +
Sbjct: 246 ----------------------------MVKCWMIDADSRPKFRE 262

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 4e-11
 Identities = 43/229 (18%), Positives = 68/229 (29%), Gaps = 78/229 (34%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           RA     EII GL  +HS+GI++RDLK  NI +D + H+KI DFG+              
Sbjct: 104 RATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMC------------- 150

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                             D       GT  Y APE+               +++S     
Sbjct: 151 ------------KENMLGDAKTNTFCGTPDYIAPEILLGQ-----KYNHSVDWWS----- 188

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
                    +G L  E+   +                P  G + ++     +   P    
Sbjct: 189 ---------FGVLLYEMLIGQS---------------PFHGQDEEELFHSIRMDNP---- 220

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ 231
                         ++   +  L            +P KR     ++ Q
Sbjct: 221 ---------FYPRWLEKEAKDLL------VKLFVREPEKRLGVRGDIRQ 254

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 5e-11
 Identities = 44/231 (19%), Positives = 66/231 (28%), Gaps = 86/231 (37%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLA 61
            A     +++E + H H+ G++HRD+K  NI ID     +K+ DFG              
Sbjct: 111 LARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGA----------- 159

Query: 62  RELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQK 121
                              DT +T   GT +Y+ PE                 Y  +   
Sbjct: 160 ----------------LLKDTVYTDFDGTRVYSPPE-----------WIRYHRYHGRSAA 192

Query: 122 AFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVY 181
            +         G L  ++                    P          Q F        
Sbjct: 193 VWS-------LGILLYDMVCGDI---------------PFEHDEEIIRGQVF-------- 222

Query: 182 REWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
                       R  + S  QH +      +WCL   PS RP+ E+    P
Sbjct: 223 -----------FRQRVSSECQHLI------RWCLALRPSDRPTFEEIQNHP 256

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 1e-10
 Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 79/228 (34%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +   +LR I  G+ ++ +   +HRDL   NI ++     K+ DFGL+  +          
Sbjct: 111 QLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP------ 164

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                               + +G      + APE                   S ++  
Sbjct: 165 ----------------EATYTTSGGKIPIRWTAPE-----------------AISYRKFT 191

Query: 123 FYVEILR---VLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPS 179
              ++     V+W  +          +  E+   I       T  +   ++ +       
Sbjct: 192 SASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQ------- 244

Query: 180 VYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                                    L++      C   + ++RP    
Sbjct: 245 -------------------------LMM-----QCWQQERARRPKFAD 262

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 1e-10
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 24/100 (24%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +   +  +I  G++++     +HRDL+  NI +      K+ DFGLA  I          
Sbjct: 114 QLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED-------- 165

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHG 102
                           +  T+  G      + APE   +G
Sbjct: 166 ----------------NEYTARQGAKFPIKWTAPEAALYG 189

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 2e-10
 Identities = 19/100 (19%), Positives = 36/100 (36%), Gaps = 22/100 (22%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
               LL ++  G+ ++  +  +HRDL   N+ +    + KI DFGL+  +          
Sbjct: 110 NVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD------ 163

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHG 102
                           S+ T+ +       + APE  +  
Sbjct: 164 ----------------SYYTARSAGKWPLKWYAPECINFR 187

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 2e-10
 Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
                  ++ +G++ + S+  IHRDL   NI + +    KI DFGLA +I       +  
Sbjct: 146 DLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKG 205

Query: 63  ELTG---YILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQ 119
                  ++ P       Y+ + S     G  L+   EL S G            ++   
Sbjct: 206 NARLPVKWMAPESIFNCVYTFE-SDVWSYGIFLW---ELFSLGSSPYPGMPVDSKFYKMI 261

Query: 120 QKAFYVEI 127
           ++ F +  
Sbjct: 262 KEGFRMLS 269

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 2e-10
 Identities = 32/159 (20%), Positives = 60/159 (37%), Gaps = 14/159 (8%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNIL--QKHAGPL 60
               +  ++ EG++++    +IHRDL   N  +     +K+ DFG+   +L  Q  +   
Sbjct: 102 TLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTG 161

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQ 120
            +    +  P + S + YS   S     G  ++   E+ S G K  Y   +         
Sbjct: 162 TKFPVKWASPEVFSFSRYSS-KSDVWSFGVLMW---EVFSEG-KIPYENRSNSEVVEDIS 216

Query: 121 KAFYVEILRVLWGYLK-------AEVYKDRPKTLEELKH 152
             F +   R+   ++         E  +DRP     L+ 
Sbjct: 217 TGFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 3e-10
 Identities = 17/47 (36%), Positives = 26/47 (55%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLA 49
                  ++ +G+  + S+  IHRDL   NI +  ++ VKI DFGLA
Sbjct: 135 HLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLA 181

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.8 bits (139), Expect = 5e-10
 Identities = 37/225 (16%), Positives = 68/225 (30%), Gaps = 75/225 (33%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
               +  +I   + ++  +  IHRDL   N  +     VK+ DFGL+  +          
Sbjct: 116 VLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG-------- 167

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                              T+H G      + APE  ++       +F+ ++       A
Sbjct: 168 ----------------DTYTAHAGAKFPIKWTAPESLAYN------KFSIKSDV----WA 201

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
           F V +  +    +      D  +  E L+ + R              +++ +  P  VY 
Sbjct: 202 FGVLLWEIATYGMSPYPGIDLSQVYELLEKDYR--------------MERPEGCPEKVYE 247

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
                                 L+       C   +PS RPS  +
Sbjct: 248 ----------------------LMR-----ACWQWNPSDRPSFAE 265

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 57.5 bits (138), Expect = 7e-10
 Identities = 38/211 (18%), Positives = 62/211 (29%), Gaps = 37/211 (17%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFI---DYEDHVKIGDFGLATNILQKHAGPL 60
              L  ++I  + +IHS+  IHRD+KP N  +      + V I DFGLA           
Sbjct: 105 VLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKY-------- 156

Query: 61  ARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPE------------LDSHGV---KA 105
                         T  +     +    GTA YA+              L+S G      
Sbjct: 157 ----------RDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYF 206

Query: 106 MYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSN 165
                  Q   +  ++  Y  I           + K  P       +  R         +
Sbjct: 207 NLGSLPWQGLKAATKRQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLR-FDDKPD 265

Query: 166 VQKSLQKFQKSPPSVYREWRSSFEWSTVRNN 196
                Q F+         +   F+W+ ++  
Sbjct: 266 YSYLRQLFRNLFHRQGFSYDYVFDWNMLKFG 296

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 57.1 bits (137), Expect = 9e-10
 Identities = 38/170 (22%), Positives = 63/170 (37%), Gaps = 17/170 (10%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           RA  ++ +  + L+  H  GIIHRD+KP NI I   + VK+ DFG+A  I          
Sbjct: 112 RAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQT 171

Query: 63  ELT----GYILPPIDSTAFYSH--DTSHTGQV------GTALYAAPELDSHGVKAMYNQF 110
                   Y+ P            D    G V      G   +      S   + +    
Sbjct: 172 AAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPVSVAYQHVREDP 231

Query: 111 TPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR-ENG 159
            P +   +   A    ++        A+  ++R +T  E++ ++ R  NG
Sbjct: 232 IPPSARHEGLSADLDAVVLKAL----AKNPENRYQTAAEMRADLVRVHNG 277

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (136), Expect = 1e-09
 Identities = 11/50 (22%), Positives = 23/50 (46%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
              +   ++ E + ++     +HRDL   N+ +  ++  K+ DFGL    
Sbjct: 104 CLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEA 153

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 1e-09
 Identities = 14/50 (28%), Positives = 27/50 (54%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
                  ++   L+++ S+  +HRD+   N+ +   D VK+GDFGL+  +
Sbjct: 109 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYM 158

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 54.8 bits (131), Expect = 2e-09
 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 6   RLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGP-LAREL 64
            +L  I+E ++  + +GI+H DL   N+ +  E+ + I DF  +  + ++     L R++
Sbjct: 107 EVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSVEVGEEGWREILERDV 165

Query: 65  T 65
            
Sbjct: 166 R 166

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 3e-09
 Identities = 20/54 (37%), Positives = 29/54 (53%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKH 56
                + EI+  L H+H  GII+RD+K  NI +D   HV + DFGL+   +   
Sbjct: 130 EVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADE 183

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 21/100 (21%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
                  ++ +G+  + S+  +HRDL   N  +D +  VK+ DFGLA ++  K       
Sbjct: 131 DLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKE------ 184

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHG 102
                          +    + TG      + A E     
Sbjct: 185 ---------------FDSVHNKTGAKLPVKWMALESLQTQ 209

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 7e-09
 Identities = 47/230 (20%), Positives = 73/230 (31%), Gaps = 49/230 (21%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
               L+ +I+ GL +IHS  IIHRDLKP N+ ++ +  +KI DFGLA             
Sbjct: 122 HVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLA------------- 168

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                             D   TG V T  Y APE+               N+    Q  
Sbjct: 169 ---------------RHTDDEMTGYVATRWYRAPEI-------------MLNWMHYNQTV 200

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
               +  ++   L             +    I R  G      ++K   +  ++      
Sbjct: 201 DIWSVGCIMAELLTGRTLFP-GTDHIDQLKLILRLVGTPGAELLKKISSESARNYIQSLT 259

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           +      ++ V           L      +  L  D  KR ++ Q L   
Sbjct: 260 QMP-KMNFANVFIGANPLAVDLL------EKMLVLDSDKRITAAQALAHA 302

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (131), Expect = 7e-09
 Identities = 49/261 (18%), Positives = 77/261 (29%), Gaps = 87/261 (33%)

Query: 4   AWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED----HVKIGDFGLATNILQKHAGP 59
           A   L++I+ G+ ++HS  I H DLKP NI +   +     +KI DFGLA  I       
Sbjct: 115 ATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKI------- 167

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQ 119
                                        GT  + APE+        Y     +      
Sbjct: 168 -------------------DFGNEFKNIFGTPEFVAPEI------VNYEPLGLEADMW-- 200

Query: 120 QKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPS 179
             +  V    +L G                          P  G   Q++L         
Sbjct: 201 --SIGVITYILLSGA------------------------SPFLGDTKQETLANVSAVNYE 234

Query: 180 VYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS 239
              E+ S         N  +  + F+      +  L  DP KR + + +L  P       
Sbjct: 235 FEDEYFS---------NTSALAKDFI------RRLLVKDPKKRMTIQDSLQHPW------ 273

Query: 240 SGLSVLGSEQLLTCDHIPPPL 260
             +    ++Q L+     P  
Sbjct: 274 --IKPKDTQQALSSAWSHPQF 292

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 2e-08
 Identities = 33/225 (14%), Positives = 69/225 (30%), Gaps = 74/225 (32%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLAR 62
           +  ++  EI +G++++++   +HRDL   N  +  +  VKIGDFG+  +I +        
Sbjct: 134 KMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET------- 186

Query: 63  ELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKA 122
                            +       +    + +PE    G       FT  +        
Sbjct: 187 ----------------DYYRKGGKGLLPVRWMSPESLKDG------VFTTYSD------- 217

Query: 123 FYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPSVYR 182
                   +W +            L E+     +   P  G + ++ L+   +       
Sbjct: 218 --------VWSF---------GVVLWEIATLAEQ---PYQGLSNEQVLRFVMEGGLLDKP 257

Query: 183 EWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ 227
           +            N        +      + C  ++P  RPS  +
Sbjct: 258 D------------NCPDMLFELM------RMCWQYNPKMRPSFLE 284

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 53.1 bits (127), Expect = 2e-08
 Identities = 42/233 (18%), Positives = 74/233 (31%), Gaps = 78/233 (33%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED---HVKIGDFGLATNILQKHAGP 59
            A RL+ ++++ + ++H  GI+HRDLKP N+     D    + I DFGL+          
Sbjct: 108 DASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSK--------- 158

Query: 60  LARELTGYILPPIDSTAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQ 119
                                 +  +   GT  Y APE+ +             + +S  
Sbjct: 159 -----------------MEDPGSVLSTACGTPGYVAPEVLAQK-----PYSKAVDCWS-- 194

Query: 120 QKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKFQKSPPS 179
                        G +   +    P               P    N  K  ++  K+   
Sbjct: 195 ------------IGVIAYILLCGYP---------------PFYDENDAKLFEQILKAEYE 227

Query: 180 VYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
               +          ++I  + + F+      +  +  DP KR + EQ L  P
Sbjct: 228 FDSPY---------WDDISDSAKDFI------RHLMEKDPEKRFTCEQALQHP 265

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.3 bits (124), Expect = 4e-08
 Identities = 39/239 (16%), Positives = 78/239 (32%), Gaps = 44/239 (18%)

Query: 3   RAWRLLREIIEGLSHIH-SQGIIHRDLKPVNIFIDYED------HVKIGDFGLATNILQK 55
              ++ ++++ GL ++H   GIIH D+KP N+ ++  D       +KI D G A    + 
Sbjct: 126 YVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEH 185

Query: 56  HAGPLARELTGYILPPIDSTAFYSH--DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQ 113
           +    + +   Y  P +   A +    D   T  +                 ++   T  
Sbjct: 186 Y--TNSIQTREYRSPEVLLGAPWGCGADIWSTACL-----------------IFELITGD 226

Query: 114 NYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPSTGSNVQKSLQKF 173
             F   +   Y +    +     A++ +   +    L  N +          + +++ K 
Sbjct: 227 FLFEPDEGHSYTKDDDHI-----AQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKL 281

Query: 174 QKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP 232
           +  P       +  F       +       FL         L  DP KR  +   +  P
Sbjct: 282 KFWPLEDVLTEKYKFS-----KDEAKEISDFL------SPMLQLDPRKRADAGGLVNHP 329

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 1e-07
 Identities = 16/50 (32%), Positives = 28/50 (56%)

Query: 3   RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI 52
                  ++  G+ ++ S+  IHRDL   N+ +  ++ +KI DFGLA +I
Sbjct: 136 DLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDI 185

>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: ATP phosphoribosyltransferase regulatory subunit HisZ
species: Thermotoga maritima [TaxId: 2336]

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 14/97 (14%), Positives = 27/97 (27%), Gaps = 8/97 (8%)

Query: 322 LRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNG 381
                   G + F  P L                + R G++ ++  D       +  +  
Sbjct: 12  FYSKATKKGFSPFFVPALEKAEEPA-----GNFFLDRKGNLFSIREDFTKTVLNHRKRYS 66

Query: 382 SIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTN 418
               +K +  D V+R     G      Y+   + V  
Sbjct: 67  PDSQIKVWYADFVYRYS---GSDLVAEYQLGLEKVPR 100

>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: ATP phosphoribosyltransferase regulatory subunit HisZ
species: Lactococcus lactis [TaxId: 1358]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 22/126 (17%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 301 TYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETT 352
           + +++L++  +   +E    +LR++F L        P        TA          E  
Sbjct: 7   SAEMTLNQVKSLRQIE---GRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKM 63

Query: 353 ASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECA 412
              +   G  +TL +D  +P  R  +Q     S +     ++FR+ +       E Y+  
Sbjct: 64  FQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIG 123

Query: 413 FDIVTN 418
            ++   
Sbjct: 124 IELFGE 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	454
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.98
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.98
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.98
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.97
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.97
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.97
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.97
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.97
d1z7ma1	318	ATP phosphoribosyltransferase regulatory subunit H	99.97
d1wu7a2	327	Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop	99.97
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.97
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.97
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.97
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.97
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.97
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.97
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.97
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.97
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.97
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.96
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.96
d1h4vb2	324	Histidyl-tRNA synthetase (HisRS) {Thermus thermoph	99.96
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.96
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.96
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.96
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.96
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.96
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.96
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.96
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.96
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.96
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.96
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.96
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.96
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.96
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.96
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.96
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.96
d1qe0a2	325	Histidyl-tRNA synthetase (HisRS) {Staphylococcus a	99.96
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.96
d1kmma2	322	Histidyl-tRNA synthetase (HisRS) {Escherichia coli	99.95
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.95
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.95
d1usya_	275	ATP phosphoribosyltransferase regulatory subunit H	99.95
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.95
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.95
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.94
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.94
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.94
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.94
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.93
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.92
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.92
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.38
d1nj8a3	268	Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc	99.06
d1qf6a4	291	Threonyl-tRNA synthetase (ThrRS) {Escherichia coli	98.9
d1nyra4	291	Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a	98.84
d1nj1a3	265	Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth	98.82
d1hc7a2	272	Prolyl-tRNA synthetase (ProRS) {Thermus thermophil	98.67
d1b76a2	331	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	98.46
d1jjca_	266	Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS	98.16
d1c0aa3	346	Aspartyl-tRNA synthetase (AspRS) {Escherichia coli	98.14
d1eova2	353	Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S	98.1
d1e1oa2	342	Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g	98.06
d1b8aa2	335	Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ	98.04
d1nnha_	293	Hypothetical protein PF1951 {Archaeon Pyrococcus f	97.93
d1l0wa3	356	Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph	97.88
d1n9wa2	304	Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph	97.49
d1seta2	311	Seryl-tRNA synthetase (SerRS) {Thermus thermophilu	96.67
d1g5ha2	290	The aaRS-like accessory subunit of mitochondrial p	96.41
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	94.13
d1jjcb5	207	Phenyl-tRNA synthetase (PheRS) beta subunit, PheT,	93.92
d1atia2	394	Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil	93.75
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	90.24
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	90.02
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	88.76
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	86.54

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-36  Score=287.87  Aligned_cols=157  Identities=27%  Similarity=0.427  Sum_probs=127.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+...                           .
T Consensus       106 ~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~---------------------------~  158 (263)
T d2j4za1         106 QRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAP---------------------------S  158 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCC---------------------------C
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecC---------------------------C
Confidence            4688999999999999999999999999999999999999999999997432                           1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       159 ~~~~~~~Gt~~Y~APE~~~---~~~~~~~~--DiwSl--------------Gvilyell~G~~---------------Pf  204 (263)
T d2j4za1         159 SRRTTLCGTLDYLPPEMIE---GRMHDEKV--DLWSL--------------GVLCYEFLVGKP---------------PF  204 (263)
T ss_dssp             CCCEETTEEGGGCCHHHHT---TCCCCTTH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             CcccccCCCCcccCHHHHc---CCCCCchh--hhhhH--------------hHHHHHHhcCCC---------------CC
Confidence            2334568999999999998   67789888  99999              999999877653               45


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      .+.+....+.++.+ ....+|+..             ++.+.+||     .+||+.||++|||++|+|+||||.+..
T Consensus       205 ~~~~~~~~~~~i~~-~~~~~p~~~-------------s~~~~~li-----~~~L~~dp~~R~t~~eil~hp~~~~~s  262 (263)
T d2j4za1         205 EANTYQETYKRISR-VEFTFPDFV-------------TEGARDLI-----SRLLKHNPSQRPMLREVLEHPWITANS  262 (263)
T ss_dssp             CCSSHHHHHHHHHT-TCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHTCHHHHHHC
T ss_pred             CCCCHHHHHHHHHc-CCCCCCccC-------------CHHHHHHH-----HHHccCCHhHCcCHHHHHcCcCcCCcC
Confidence            55555555555543 334444442             37778888     999999999999999999999998643

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-35  Score=288.41  Aligned_cols=160  Identities=26%  Similarity=0.415  Sum_probs=124.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.+|++||+|||+|+.+..                         ..
T Consensus       116 ~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~-------------------------~~  170 (293)
T d1yhwa1         116 GQIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITP-------------------------EQ  170 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS-------------------------TT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeecc-------------------------cc
Confidence            46899999999999999999999999999999999999999999999986531                         22


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       171 ~~~~~~~gt~~Y~aPE~~~---~~~~~~~~--DiwSl--------------GvilyemltG~~---------------Pf  216 (293)
T d1yhwa1         171 SKRSTMVGTPYWMAPEVVT---RKAYGPKV--DIWSL--------------GIMAIEMIEGEP---------------PY  216 (293)
T ss_dssp             CCBCCCCSCGGGCCHHHHS---SSCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             ccccccccCCCccChhhhc---CCCCCchh--ceehH--------------hHHHHHHhhCCC---------------CC
Confidence            3345678999999999998   67889888  99999              999999877654               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.+....+..+.....+.++..           ...++.+.+||     .+||+.||++|||++|+|+||||+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~s~~~~~li-----~~~L~~dP~~R~s~~eil~Hp~~~~  275 (293)
T d1yhwa1         217 LNENPLRALYLIATNGTPELQNP-----------EKLSAIFRDFL-----NRCLDMDVEKRGSAKELLQHQFLKI  275 (293)
T ss_dssp             TTSCHHHHHHHHHHHCSCCCSSG-----------GGSCHHHHHHH-----HHHTCSSTTTSCCHHHHTTCGGGGG
T ss_pred             CCCCHHHHHHHHHhCCCCCCCCc-----------ccCCHHHHHHH-----HHHccCChhHCcCHHHHhcCHhhCC
Confidence            33333333332222222222111           11237778888     9999999999999999999999974

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-36  Score=286.17  Aligned_cols=164  Identities=23%  Similarity=0.343  Sum_probs=121.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       103 ~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~-----------------------~~~  159 (271)
T d1nvra_         103 PDAQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYN-----------------------NRE  159 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEET-----------------------TEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccC-----------------------Ccc
Confidence            468899999999999999999999999999999999999999999999865321                       112


Q ss_pred             CCCcCcccccceeccccccccccccc-cccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMY-NQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~-~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+..+||+.|||||++.   +..| +.++  ||||+              ||++|||++|++               |
T Consensus       160 ~~~~~~~GT~~Y~APE~~~---~~~~~~~~~--DiwSl--------------Gvilyeml~G~~---------------p  205 (271)
T d1nvra_         160 RLLNKMCGTLPYVAPELLK---RREFHAEPV--DVWSC--------------GIVLTAMLAGEL---------------P  205 (271)
T ss_dssp             CCBCCCCSCGGGSCTHHHH---CSSBCHHHH--HHHHH--------------HHHHHHHHHSSC---------------S
T ss_pred             ccccceeeCcCccCHhHhc---CCCCCCCce--eeeHh--------------HHHHHHHHhCCC---------------C
Confidence            3345679999999999987   4454 5678  99999              999999877654               2


Q ss_pred             CCCchh-hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         161 STGSNV-QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       161 ~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      +..... ......+.... ...+.      |.     ..++++.+||     .+||+.||++|||++|+|+||||++...
T Consensus       206 f~~~~~~~~~~~~~~~~~-~~~~~------~~-----~~s~~~~~li-----~~~L~~dP~~R~t~~eil~hpwf~~~l~  268 (271)
T d1nvra_         206 WDQPSDSCQEYSDWKEKK-TYLNP------WK-----KIDSAPLALL-----HKILVENPSARITIPDIKKDRWYNKPLK  268 (271)
T ss_dssp             CSSSSTTSHHHHHHHTTC-TTSTT------GG-----GSCHHHHHHH-----HHHSCSSTTTSCCHHHHTTCTTTTCCCC
T ss_pred             CCCCChHHHHHHHHhcCC-CCCCc------cc-----cCCHHHHHHH-----HHHcCCChhHCcCHHHHhcCHhhCcCCC
Confidence            222111 11111121111 11111      11     1236777888     9999999999999999999999986543

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-35  Score=289.02  Aligned_cols=171  Identities=23%  Similarity=0.351  Sum_probs=136.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.+++||+.||+|||++|||||||||+|||++.+|++||+|||+|+...                         ...
T Consensus       105 ~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~-------------------------~~~  159 (337)
T d1o6la_         105 ERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGI-------------------------SDG  159 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSC-------------------------CTT
T ss_pred             HHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccc-------------------------cCC
Confidence            3689999999999999999999999999999999999999999999998542                         122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       160 ~~~~~~~GT~~Y~aPE~~~---~~~y~~~~--DiwSl--------------Gvilyeml~G~~---------------pf  205 (337)
T d1o6la_         160 ATMKTFCGTPEYLAPEVLE---DNDYGRAV--DWWGL--------------GVVMYEMMCGRL---------------PF  205 (337)
T ss_dssp             CCBCCCEECGGGCCGGGGS---SSCBCTTH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             cccccceeCHHHhhhhhcc---CCCCChhh--cccch--------------hhHHHHHHHCCC---------------CC
Confidence            3455679999999999998   77899998  99999              999999876653               55


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f~~  236 (454)
                      .+.+.......+.. ....+|...             ++++.+||     ++||+.||++|++     ++|+++||||..
T Consensus       206 ~~~~~~~~~~~i~~-~~~~~p~~~-------------s~~~~dli-----~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~  266 (337)
T d1o6la_         206 YNQDHERLFELILM-EEIRFPRTL-------------SPEAKSLL-----AGLLKKDPKQRLGGGPSDAKEVMEHRFFLS  266 (337)
T ss_dssp             CCSSHHHHHHHHHH-CCCCCCTTS-------------CHHHHHHH-----HHHTCSSTTTSTTCSTTTHHHHHTSGGGTT
T ss_pred             CCcCHHHHHHHHhc-CCCCCCccC-------------CHHHHHHH-----HhhccCCchhhcccccccHHHHHcCccccc
Confidence            55555555555443 334555543             37788999     9999999999995     899999999974


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                              ++|+++.+....||
T Consensus       267 --------i~~~~l~~~~~~~p  280 (337)
T d1o6la_         267 --------INWQDVVQKKLLPP  280 (337)
T ss_dssp             --------CCHHHHHTTCSCCS
T ss_pred             --------CCHHHHHhCCCCCC
Confidence                    45666665554443

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-35  Score=282.36  Aligned_cols=168  Identities=28%  Similarity=0.333  Sum_probs=129.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.|++.||+|||++|||||||||+|||++.++.+||+|||+|+.+...                       ...
T Consensus       108 ~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~-----------------------~~~  164 (288)
T d1uu3a_         108 TCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPE-----------------------SKQ  164 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccC-----------------------Ccc
Confidence            468899999999999999999999999999999999999999999999865321                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       165 ~~~~~~~GT~~Y~APE~~~---~~~~~~~~--DiwSl--------------Gvilyell~g~~---------------Pf  210 (288)
T d1uu3a_         165 ARANSFVGTAQYVSPELLT---EKSACKSS--DLWAL--------------GCIIYQLVAGLP---------------PF  210 (288)
T ss_dssp             -----CCCCGGGCCHHHHH---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             cccccccCCccccCceeec---cCCCCccc--ceehh--------------hHHHHHHhhCCC---------------CC
Confidence            2345578999999999998   67889888  99999              999999876653               55


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh------hcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN------LCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~------l~hp~f~  235 (454)
                      .+.+....+.++.+ ....+|+..             ++.+.+||     ++||+.||++|||++|+      ++||||.
T Consensus       211 ~~~~~~~~~~~i~~-~~~~~p~~~-------------s~~~~~li-----~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~  271 (288)
T d1uu3a_         211 RAGNEYLIFQKIIK-LEYDFPEKF-------------FPKARDLV-----EKLLVLDATKRLGCEEMEGYGPLKAHPFFE  271 (288)
T ss_dssp             CCSSHHHHHHHHHT-TCCCCCTTC-------------CHHHHHHH-----HTTSCSSGGGSTTSGGGTCHHHHHTSGGGT
T ss_pred             CCcCHHHHHHHHHc-CCCCCCccC-------------CHHHHHHH-----HHHccCCHhHCcCHHHHcCCHHHHcCCccC
Confidence            55555555555543 334455432             37778898     99999999999999995      6788886


Q ss_pred             cCCCCCCCccCccccccC
Q psy7309         236 EGSSSGLSVLGSEQLLTC  253 (454)
Q Consensus       236 ~~~~~~~~~~~~~~ll~~  253 (454)
                              .++|+.+.+.
T Consensus       272 --------~i~w~~l~~~  281 (288)
T d1uu3a_         272 --------SVTWENLHQQ  281 (288)
T ss_dssp             --------TCCCTTGGGS
T ss_pred             --------CCCHHHhhcC
Confidence                    3677777753

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-35  Score=284.21  Aligned_cols=165  Identities=25%  Similarity=0.345  Sum_probs=127.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++++||+|||+|+.....                         .
T Consensus       110 ~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~-------------------------~  164 (288)
T d2jfla1         110 SQIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRT-------------------------I  164 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHH-------------------------H
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCC-------------------------c
Confidence            468999999999999999999999999999999999999999999999754321                         1


Q ss_pred             CCCcCcccccceecccccccc--ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG--VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~--~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ......+||+.|||||++...  ....|+.++  ||||+              ||++|||++|++               
T Consensus       165 ~~~~~~~Gt~~y~APE~l~~~~~~~~~y~~k~--DiwSl--------------Gvilyemltg~~---------------  213 (288)
T d2jfla1         165 QRRDSFIGTPYWMAPEVVMCETSKDRPYDYKA--DVWSL--------------GITLIEMAEIEP---------------  213 (288)
T ss_dssp             HHHTCCCSCCTTCCHHHHTTCSTTTSSTTTHH--HHHHH--------------HHHHHHHHHSSC---------------
T ss_pred             ccccccccccccCCHHHHhhcccCCCCCChhh--hHHHH--------------HHHHHHHhhCCC---------------
Confidence            122346899999999998521  245688888  99999              999999877654               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      |+.+.+....+.++.....+.++..           ...++++.+||     ++||+.||++|||++|+|+||||+...
T Consensus       214 Pf~~~~~~~~~~~i~~~~~~~~~~~-----------~~~s~~~~~li-----~~~L~~dp~~R~t~~ell~hp~~~~~~  276 (288)
T d2jfla1         214 PHHELNPMRVLLKIAKSEPPTLAQP-----------SRWSSNFKDFL-----KKCLEKNVDARWTTSQLLQHPFVTVDS  276 (288)
T ss_dssp             TTTTSCGGGHHHHHHHSCCCCCSSG-----------GGSCHHHHHHH-----HHHSCSSTTTSCCHHHHTTSGGGCCCC
T ss_pred             CCCCCCHHHHHHHHHcCCCCCCCcc-----------ccCCHHHHHHH-----HHHccCChhHCcCHHHHhcCcccCCCC
Confidence            4445444455555544443332221           12237778888     999999999999999999999998543

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-35  Score=280.32  Aligned_cols=156  Identities=29%  Similarity=0.416  Sum_probs=116.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC-----CcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG-----IIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g-----iiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      ..++.++.||+.||+|||++|     ||||||||+|||++.++.+||+|||+|+.+..                      
T Consensus       109 ~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~----------------------  166 (269)
T d2java1         109 EFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNH----------------------  166 (269)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeeccc----------------------
Confidence            368999999999999999976     99999999999999999999999999986532                      


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhh
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRR  156 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~  156 (454)
                         .....+..+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++            
T Consensus       167 ---~~~~~~~~~gt~~Y~APE~l~---~~~~~~~~--DIwSl--------------Gvilyel~tg~~------------  212 (269)
T d2java1         167 ---DTSFAKAFVGTPYYMSPEQMN---RMSYNEKS--DIWSL--------------GCLLYELCALMP------------  212 (269)
T ss_dssp             ------------CCCSCCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC------------
T ss_pred             ---CCCccccCCCCcccCCHHHHc---CCCCChHH--HHHhh--------------CHHHHHHhhCCC------------
Confidence               122344578999999999998   67899998  99999              999999876553            


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPIS  234 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f  234 (454)
                         |+.+.+......++.......+|...             ++++.+||     ++||+.||++|||++|+|+|||.
T Consensus       213 ---Pf~~~~~~~~~~~i~~~~~~~~~~~~-------------s~~l~~li-----~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         213 ---PFTAFSQKELAGKIREGKFRRIPYRY-------------SDELNEII-----TRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             ---SCCCSSHHHHHHHHHHTCCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             ---CCCCCCHHHHHHHHHcCCCCCCCccc-------------CHHHHHHH-----HHHcCCChhHCcCHHHHHhCCcC
Confidence               45555555555555544444444332             36778888     99999999999999999999995

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=9.3e-35  Score=283.99  Aligned_cols=159  Identities=26%  Similarity=0.378  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||.|||++|||||||||+|||++.++.+||+|||+|....                            
T Consensus       115 ~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~----------------------------  166 (309)
T d1u5ra_         115 VEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMA----------------------------  166 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSS----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccC----------------------------
Confidence            4689999999999999999999999999999999999999999999997432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                       .....+||+.|||||++.......|+.++  ||||+              ||++|||++|+.               |+
T Consensus       167 -~~~~~~GT~~Y~APE~~~~~~~~~y~~~~--DiwSl--------------Gvilyel~~g~~---------------Pf  214 (309)
T d1u5ra_         167 -PANSFVGTPYWMAPEVILAMDEGQYDGKV--DVWSL--------------GITCIELAERKP---------------PL  214 (309)
T ss_dssp             -SBCCCCSCGGGCCHHHHTTTTSCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             -CCCccccCccccCHHHHhccCCCCcCchh--hhhhH--------------HHHHHHHHHCCC---------------CC
Confidence             12345899999999998633345688888  99999              999999876553               33


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      .+.+....+.++.....+.++..            ..++.+.+||     .+||+.||++|||++|+|+||||...
T Consensus       215 ~~~~~~~~~~~i~~~~~~~~~~~------------~~s~~~~~li-----~~~L~~dP~~Rpt~~ell~Hp~~~~~  273 (309)
T d1u5ra_         215 FNMNAMSALYHIAQNESPALQSG------------HWSEYFRNFV-----DSCLQKIPQDRPTSEVLLKHRFVLRE  273 (309)
T ss_dssp             TTSCHHHHHHHHHHSCCCCCSCT------------TSCHHHHHHH-----HHHTCSSGGGSCCHHHHTTCHHHHSC
T ss_pred             CCCCHHHHHHHHHhCCCCCCCCC------------CCCHHHHHHH-----HHHCcCChhHCcCHHHHHhCHHhcCC
Confidence            33333333333333333222221            1236778888     99999999999999999999999753

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2e-34  Score=286.40  Aligned_cols=167  Identities=22%  Similarity=0.214  Sum_probs=131.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||.|||++|||||||||+|||++.+|++||+|||+|+.+.                            
T Consensus       141 ~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~----------------------------  192 (350)
T d1rdqe_         141 PHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVK----------------------------  192 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECS----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeecc----------------------------
Confidence            4689999999999999999999999999999999999999999999998542                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       193 ~~~~~~~Gt~~Y~APE~~~---~~~~~~~~--DiwSl--------------GvilyemltG~~---------------Pf  238 (350)
T d1rdqe_         193 GRTWTLCGTPEALAPEIIL---SKGYNKAV--DWWAL--------------GVLIYEMAAGYP---------------PF  238 (350)
T ss_dssp             SCBCCCEECGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             cccccccCccccCCHHHHc---CCCCCccc--cccch--------------hHHHHHHHhCCC---------------CC
Confidence            1234578999999999998   67899888  99999              999999877654               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      .+.+....+.++... ...+|...             ++++.+||     ++||+.||.+|+     |++|+++||||..
T Consensus       239 ~~~~~~~~~~~i~~~-~~~~p~~~-------------s~~~~~li-----~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~  299 (350)
T d1rdqe_         239 FADQPIQIYEKIVSG-KVRFPSHF-------------SSDLKDLL-----RNLLQVDLTKRFGNLKNGVNDIKNHKWFAT  299 (350)
T ss_dssp             CCSSHHHHHHHHHHC-CCCCCTTC-------------CHHHHHHH-----HHHSCSCTTTCTTSSTTTTHHHHTSGGGTT
T ss_pred             CCcCHHHHHHHHhcC-CCCCCccC-------------CHHHHHHH-----HHHhhhCHHhccccccccHHHHHcCccccC
Confidence            444444444444433 23334332             37778898     999999999995     9999999999974


Q ss_pred             CCCCCCCccCccccccCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIP  257 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~  257 (454)
                              ++|+.+.+....|
T Consensus       300 --------~~~~~~~~~~~~~  312 (350)
T d1rdqe_         300 --------TDWIAIYQRKVEA  312 (350)
T ss_dssp             --------CCHHHHHTTCSCC
T ss_pred             --------CCHHHHHhcCCCc
Confidence                    4566665544433

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-34  Score=279.02  Aligned_cols=184  Identities=23%  Similarity=0.266  Sum_probs=126.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                         ..
T Consensus       100 ~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~-------------------------~~  154 (299)
T d1ua2a_         100 SHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGS-------------------------PN  154 (299)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTS-------------------------CC
T ss_pred             HHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCC-------------------------Cc
Confidence            47899999999999999999999999999999999999999999999985532                         12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|.+     ...+.+..+...
T Consensus       155 ~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--DiwSl--------------Gvil~el~~g~~pf~~~~~~~~l~~i~~~  216 (299)
T d1ua2a_         155 RAYTHQVVTRWYRAPELLFG--ARMYGVGV--DMWAV--------------GCILAELLLRVPFLPGDSDLDQLTRIFET  216 (299)
T ss_dssp             CCCCCSCCCCTTCCHHHHTT--CSCCCHHH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             ccccceecChhhccHHHHcc--CCCCChhh--hhhhc--------------chHHHHHHhCcCCCCCCCHHHHHHHHHHh
Confidence            23445689999999999862  45678888  99999              999999777654     223333333333


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.|..... ..............++    ...+..... ..++.+.+||     ++||+.||++||||+|+|+||||+.
T Consensus       217 ~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~~~~-~~s~~~~dll-----~~~L~~dP~~R~sa~e~L~Hp~f~~  285 (299)
T d1ua2a_         217 LGTPTEEQW-PDMCSLPDYVTFKSFP----GIPLHHIFS-AAGDDLLDLI-----QGLFLFNPCARITATQALKMKYFSN  285 (299)
T ss_dssp             HCCCCTTTS-SSTTSSTTCCCCCCCC----CCCHHHHCT-TCCHHHHHHH-----HHHHCSSTTTSCCHHHHHTSGGGTS
T ss_pred             cCCCChhhc-cchhccchhhhhccCC----CCChHHhcc-cCCHHHHHHH-----HHHccCChhhCcCHHHHhCCHhhCC
Confidence            333322211 0000000000000001    111222221 2246677888     9999999999999999999999986


Q ss_pred             CCC
Q psy7309         237 GSS  239 (454)
Q Consensus       237 ~~~  239 (454)
                      ...
T Consensus       286 ~p~  288 (299)
T d1ua2a_         286 RPG  288 (299)
T ss_dssp             SSC
T ss_pred             CCC
Confidence            543

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.6e-34  Score=281.76  Aligned_cols=168  Identities=30%  Similarity=0.360  Sum_probs=133.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.+++||+.||+|||++|||||||||+|||++.+|.+||+|||+|+...                            
T Consensus       104 ~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~----------------------------  155 (316)
T d1fota_         104 PVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVP----------------------------  155 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECS----------------------------
T ss_pred             cHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEec----------------------------
Confidence            3578899999999999999999999999999999999999999999998542                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       156 ~~~~~~~Gt~~Y~APE~l~---~~~y~~~~--DiwSl--------------GvilyemltG~~---------------Pf  201 (316)
T d1fota_         156 DVTYTLCGTPDYIAPEVVS---TKPYNKSI--DWWSF--------------GILIYEMLAGYT---------------PF  201 (316)
T ss_dssp             SCBCCCCSCTTTCCHHHHT---TCCBCTTH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             cccccccCcccccCHHHHc---CCCCCchh--hcccc--------------chhHHHHHhCCC---------------CC
Confidence            1234578999999999998   67899888  99999              999999877654               45


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCccccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQPISLE  236 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp~f~~  236 (454)
                      .+.+......++... ...+|...             ++++.++|     .+||+.||.+|+     |++|+++||||+.
T Consensus       202 ~~~~~~~~~~~i~~~-~~~~p~~~-------------s~~~~~li-----~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~  262 (316)
T d1fota_         202 YDSNTMKTYEKILNA-ELRFPPFF-------------NEDVKDLL-----SRLITRDLSQRLGNLQNGTEDVKNHPWFKE  262 (316)
T ss_dssp             CCSSHHHHHHHHHHC-CCCCCTTS-------------CHHHHHHH-----HHHTCSCTTTCTTSSTTTTHHHHTSGGGSS
T ss_pred             CCcCHHHHHHHHHcC-CCCCCCCC-------------CHHHHHHH-----HHHhhhCHHhccccchhhHHHHHcCccccc
Confidence            555555555555433 23444432             26778888     999999999996     9999999999974


Q ss_pred             CCCCCCCccCccccccCCCCCC
Q psy7309         237 GSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       237 ~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                              ++|+.+.+....++
T Consensus       263 --------i~~~~l~~~~~~~p  276 (316)
T d1fota_         263 --------VVWEKLLSRNIETP  276 (316)
T ss_dssp             --------CCHHHHHTTCSCCS
T ss_pred             --------CCHHHHHhCCCCcC
Confidence                    56777765554443

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-34  Score=274.33  Aligned_cols=155  Identities=25%  Similarity=0.348  Sum_probs=118.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcC--CcccCCCCCcEEEc-cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQG--IIHRDLKPVNIFID-YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~g--iiHrDLKp~NILl~-~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      +.++.+++||+.||+|||++|  |+||||||+|||++ .++.+||+|||+|+...                         
T Consensus       112 ~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~-------------------------  166 (270)
T d1t4ha_         112 KVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKR-------------------------  166 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceecc-------------------------
Confidence            467899999999999999998  99999999999997 47899999999997431                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|||||++.    ..|+.++  ||||+              ||++|||++|+.              
T Consensus       167 --~~~~~~~~GT~~Y~aPE~~~----~~~~~~~--DIwSl--------------Gvilyel~~g~~--------------  210 (270)
T d1t4ha_         167 --ASFAKAVIGTPEFMAPEMYE----EKYDESV--DVYAF--------------GMCMLEMATSEY--------------  210 (270)
T ss_dssp             --TTSBEESCSSCCCCCGGGGG----TCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CCccCCcccCccccCHHHhC----CCCCCcC--chhhH--------------HHHHHHHHHCCC--------------
Confidence              12334568999999999986    3589888  99999              999999877654              


Q ss_pred             CCCCCch-hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         159 GPSTGSN-VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       159 ~p~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                       |+.+.. .......+.....+   ...   +      ...++++.++|     .+||+.||++|||++|+|+||||+
T Consensus       211 -Pf~~~~~~~~~~~~i~~~~~~---~~~---~------~~~~~~~~~li-----~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         211 -PYSECQNAAQIYRRVTSGVKP---ASF---D------KVAIPEVKEII-----EGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             -TTTTCSSHHHHHHHHTTTCCC---GGG---G------GCCCHHHHHHH-----HHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             -CCCCcccHHHHHHHHHcCCCC---ccc---C------ccCCHHHHHHH-----HHHccCCHhHCcCHHHHhCCcccC
Confidence             333222 22233333322211   110   0      12336778888     999999999999999999999995

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-34  Score=283.42  Aligned_cols=173  Identities=22%  Similarity=0.330  Sum_probs=118.7

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ..++.++.||+.||+|||+ +||+||||||+|||++.++++||+|||+|+.....                         
T Consensus       104 ~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~-------------------------  158 (322)
T d1s9ja_         104 QILGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDS-------------------------  158 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHH-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCC-------------------------
Confidence            4688999999999999997 59999999999999999999999999999976431                         


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhh------HHHHHHHh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKT------LEELKHNI  154 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~------~~~l~~~i  154 (454)
                        ..++.+||+.|||||++.   +..|+.++  ||||+              ||++|||++|+.+.      ..++....
T Consensus       159 --~~~~~~GT~~Y~APEvl~---~~~y~~~~--DiWSl--------------Gvil~ell~G~~Pf~~~~~~~~~~~~~~  217 (322)
T d1s9ja_         159 --MANSFVGTRSYMSPERLQ---GTHYSVQS--DIWSM--------------GLSLVEMAVGRYPIPPPDAKELELMFGC  217 (322)
T ss_dssp             --TC---CCSSCCCCHHHHH---CSCCCTTH--HHHHH--------------HHHHHHHHHSSCCSSCCCTTHHHHHC--
T ss_pred             --ccccccCCccccCchHHc---CCCCCcHH--HHHHH--------------HHHHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence              223569999999999998   67899999  99999              99999977655321      11110000


Q ss_pred             hhcCCCCC---------------------CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhh
Q psy7309         155 RRENGPST---------------------GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKW  213 (454)
Q Consensus       155 ~~~~~p~~---------------------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  213 (454)
                      ...+.+..                     ...............++.++.            ...++++.+||     .+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~s~~~~dli-----~~  280 (322)
T d1s9ja_         218 QVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFELLDYIVNEPPPKLPS------------GVFSLEFQDFV-----NK  280 (322)
T ss_dssp             ----------------------------CCCCHHHHHHHHHTSCCCCCCB------------TTBCHHHHHHH-----HH
T ss_pred             HhcCCcccCCcccccccccccccccccccchhHHHHHhhhhccCCccCcc------------ccCCHHHHHHH-----HH
Confidence            00000000                     000111111111122222221            12346677888     99


Q ss_pred             hcCCCCCCCCChhhhhcCcccccC
Q psy7309         214 CLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       214 ~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      ||+.||++||||+|+|+||||+..
T Consensus       281 ~L~~dP~~R~ta~e~L~Hpf~~~~  304 (322)
T d1s9ja_         281 CLIKNPAERADLKQLMVHAFIKRS  304 (322)
T ss_dssp             HTCSSTTTSCCHHHHHTSHHHHHH
T ss_pred             HcCCChhHCcCHHHHhhCHhhCcC
Confidence            999999999999999999999853

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.4e-34  Score=278.31  Aligned_cols=176  Identities=25%  Similarity=0.381  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.++.+++|++.||+|||++||+||||||+|||++.++.+||+|||+++....                          .
T Consensus       116 ~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~--------------------------~  169 (305)
T d1blxa_         116 ETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSF--------------------------Q  169 (305)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCG--------------------------G
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhhhcc--------------------------c
Confidence            46889999999999999999999999999999999999999999999874321                          2


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|+++     ..+.+..++..
T Consensus       170 ~~~~~~~gT~~Y~APE~~~---~~~y~~~~--DiwSl--------------G~il~ell~g~~pf~~~~~~~~~~~i~~~  230 (305)
T d1blxa_         170 MALTSVVVTLWYRAPEVLL---QSSYATPV--DLWSV--------------GCIFAEMFRRKPLFRGSSDVDQLGKILDV  230 (305)
T ss_dssp             GGGCCCCCCCTTCCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             ccCCCcccChhhcCcchhc---CCCCChhe--hhhch--------------HHHHHHHHHCCCCCCCCCHHHHHHHHHHh
Confidence            2344578999999999998   67899999  99999              9999997776542     22333333332


Q ss_pred             cCCCCCCchhhh---hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         157 ENGPSTGSNVQK---SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~~~~---~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      .+.|........   ....+.......         +.... ...++.+.+||     ++||++||++||||+|+|+|||
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~s~~~~dli-----~~mL~~dP~~R~sa~e~L~Hpf  295 (305)
T d1blxa_         231 IGLPGEEDWPRDVALPRQAFHSKSAQP---------IEKFV-TDIDELGKDLL-----LKCLTFNPAKRISAYSALSHPY  295 (305)
T ss_dssp             HCCCCGGGSCTTCSSCGGGSCCCCCCC---------GGGTC-CSCCHHHHHHH-----HHHSCSSTTTSCCHHHHHTSGG
T ss_pred             hCCCchhcccccccchhhhhccccccc---------hhhcc-ccCCHHHHHHH-----HHHCcCChhHCcCHHHHhcChh
Confidence            222221110000   000000000000         11111 12346677888     9999999999999999999999


Q ss_pred             cccC
Q psy7309         234 SLEG  237 (454)
Q Consensus       234 f~~~  237 (454)
                      |++.
T Consensus       296 f~~i  299 (305)
T d1blxa_         296 FQDL  299 (305)
T ss_dssp             GTTC
T ss_pred             hcCc
Confidence            9854

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.98  E-value=5.6e-34  Score=278.22  Aligned_cols=160  Identities=27%  Similarity=0.400  Sum_probs=113.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc---cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID---YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~---~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+++.+++||+.||+|||++||+||||||+|||+.   .++.+||+|||+|+....                        
T Consensus       107 ~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~------------------------  162 (307)
T d1a06a_         107 RDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDP------------------------  162 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC--------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccC------------------------
Confidence            46889999999999999999999999999999995   467899999999985431                        


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                        .......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|.+              
T Consensus       163 --~~~~~~~~GT~~y~APE~~~---~~~~~~~~--DiwSl--------------Gvilyell~g~~--------------  207 (307)
T d1a06a_         163 --GSVLSTACGTPGYVAPEVLA---QKPYSKAV--DCWSI--------------GVIAYILLCGYP--------------  207 (307)
T ss_dssp             ------------CTTSCHHHHT---TCCCCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             --CCeeeeeeeCccccCcHHHc---CCCCCcHH--Hhhhh--------------hHHHHHHHhCCC--------------
Confidence              22344578999999999998   67899988  99999              999999876654              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       |+.+.........+..... .++...    |     ...++.+.+||     .+||+.||++|||++|+++||||..
T Consensus       208 -Pf~~~~~~~~~~~i~~~~~-~~~~~~----~-----~~~s~~~~~li-----~~~L~~dP~~R~s~~eil~hp~~~~  269 (307)
T d1a06a_         208 -PFYDENDAKLFEQILKAEY-EFDSPY----W-----DDISDSAKDFI-----RHLMEKDPEKRFTCEQALQHPWIAG  269 (307)
T ss_dssp             -SCCCSSHHHHHHHHHTTCC-CCCTTT----T-----TTSCHHHHHHH-----HHHSCSSGGGSCCHHHHHHSTTTTS
T ss_pred             -CCCCCCHHHHHHHHhccCC-CCCCcc----c-----cCCCHHHHHHH-----HHHccCCHhHCcCHHHHhcCHhhCC
Confidence             4544444444444443322 222111    0     12237778888     9999999999999999999999974

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.98  E-value=1.3e-33  Score=280.73  Aligned_cols=162  Identities=28%  Similarity=0.386  Sum_probs=126.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEc--cCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFID--YEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~--~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      .+++.+++||+.||+|||++|||||||||+|||++  .++.+||+|||+|+.+.                          
T Consensus       127 ~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~--------------------------  180 (352)
T d1koba_         127 AEVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLN--------------------------  180 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECC--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecC--------------------------
Confidence            46899999999999999999999999999999998  56899999999998652                          


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .........||+.|+|||++.   +..|+.++  ||||+              ||++|||++|++               
T Consensus       181 ~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------GvilyelltG~~---------------  226 (352)
T d1koba_         181 PDEIVKVTTATAEFAAPEIVD---REPVGFYT--DMWAI--------------GVLGYVLLSGLS---------------  226 (352)
T ss_dssp             TTSCEEEECSSGGGCCHHHHT---TCCBCHHH--HHHHH--------------HHHHHHHHHSCC---------------
T ss_pred             CCCceeeccCcccccCHHHHc---CCCCCCcc--chHHH--------------HHHHHHHHhCCC---------------
Confidence            223445578999999999998   67899999  99999              999999877654               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGS  238 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~  238 (454)
                      |+.+......+..+.... ..++...    |     ...++++.+||     ++||+.||.+|||++|+|+||||+...
T Consensus       227 Pf~~~~~~~~~~~i~~~~-~~~~~~~----~-----~~~s~~~~~li-----~~~L~~dp~~R~s~~eil~Hp~~~~~~  290 (352)
T d1koba_         227 PFAGEDDLETLQNVKRCD-WEFDEDA----F-----SSVSPEAKDFI-----KNLLQKEPRKRLTVHDALEHPWLKGDH  290 (352)
T ss_dssp             SSCCSSHHHHHHHHHHCC-CCCCSST----T-----TTSCHHHHHHH-----HTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             CCCCCCHHHHHHHHHhCC-CCCCccc----c-----cCCCHHHHHHH-----HHHccCChhHCcCHHHHhcCHhhCCCc
Confidence            444444444444444322 2222221    1     12337778898     999999999999999999999998643

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.97  E-value=7.8e-34  Score=282.05  Aligned_cols=163  Identities=27%  Similarity=0.372  Sum_probs=126.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc--CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY--EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~--~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ++++.+++||+.||+|||++|||||||||+|||++.  ++.+||+|||+|+.+.                          
T Consensus       124 ~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~--------------------------  177 (350)
T d1koaa2         124 DEAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLD--------------------------  177 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECC--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecc--------------------------
Confidence            468999999999999999999999999999999964  5789999999998552                          


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ........+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               
T Consensus       178 ~~~~~~~~~gT~~Y~aPEv~~---~~~~~~~~--DiwSl--------------Gvilyell~G~~---------------  223 (350)
T d1koaa2         178 PKQSVKVTTGTAEFAAPEVAE---GKPVGYYT--DMWSV--------------GVLSYILLSGLS---------------  223 (350)
T ss_dssp             TTSCEEEECSCTTTCCHHHHH---TCCBCHHH--HHHHH--------------HHHHHHHHHSSC---------------
T ss_pred             cccccceecCcccccCHHHHc---CCCCChhH--hhhhh--------------hHHHHHHHhCCC---------------
Confidence            123345578999999999998   67888888  99999              999999876653               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccCCC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEGSS  239 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~~~  239 (454)
                      |+.+.+....+..+..... .++...    |     ...++.+.+||     ++||+.||++|||++|+|+||||.....
T Consensus       224 Pf~~~~~~~~~~~i~~~~~-~~~~~~----~-----~~~s~~~~~li-----~~~L~~dP~~R~t~~eil~hp~~~~~~~  288 (350)
T d1koaa2         224 PFGGENDDETLRNVKSCDW-NMDDSA----F-----SGISEDGKDFI-----RKLLLADPNTRMTIHQALEHPWLTPGNA  288 (350)
T ss_dssp             SSCCSSHHHHHHHHHHTCC-CSCCGG----G-----GGCCHHHHHHH-----HHHCCSSGGGSCCHHHHHHSTTTSCTTC
T ss_pred             CCCCCCHHHHHHHHHhCCC-CCCccc----c-----cCCCHHHHHHH-----HHHccCChhHCcCHHHHhcCcccCCCCC
Confidence            4444444444444432222 222111    1     12346778888     9999999999999999999999987654

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-33  Score=276.27  Aligned_cols=170  Identities=29%  Similarity=0.424  Sum_probs=134.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++++||+|||+|+...                         ...
T Consensus       103 ~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~-------------------------~~~  157 (320)
T d1xjda_         103 SRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENM-------------------------LGD  157 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCC-------------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhcc-------------------------ccc
Confidence            4689999999999999999999999999999999999999999999997542                         122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...+..+||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       158 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------GvilyemltG~~---------------PF  203 (320)
T d1xjda_         158 AKTNTFCGTPDYIAPEILL---GQKYNHSV--DWWSF--------------GVLLYEMLIGQS---------------PF  203 (320)
T ss_dssp             CCBCCCCSCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             ccccccCCCCCcCCHHHHc---CCCCCchh--hhhhh--------------hHHHHHHHhCCC---------------CC
Confidence            3345568999999999998   67899888  99999              999999877653               55


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh-hhhcCcccccCCCC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE-QNLCQPISLEGSSS  240 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~-e~l~hp~f~~~~~~  240 (454)
                      .+.+......++... .+.+|...             ++.+.+||     ++||+.||++|||++ |+++||||..    
T Consensus       204 ~~~~~~~~~~~i~~~-~~~~p~~~-------------s~~~~dli-----~~~L~~dP~~R~s~~~~l~~hpff~~----  260 (320)
T d1xjda_         204 HGQDEEELFHSIRMD-NPFYPRWL-------------EKEAKDLL-----VKLFVREPEKRLGVRGDIRQHPLFRE----  260 (320)
T ss_dssp             CCSSHHHHHHHHHHC-CCCCCTTS-------------CHHHHHHH-----HHHSCSSGGGSBTTBSCGGGSGGGTT----
T ss_pred             CCCCHHHHHHHHHcC-CCCCCccC-------------CHHHHHHH-----HHhcccCCCCCcCHHHHHHhCchhcc----
Confidence            555555555554433 34455442             37788999     999999999999996 8999999974    


Q ss_pred             CCCccCccccccCCCCC
Q psy7309         241 GLSVLGSEQLLTCDHIP  257 (454)
Q Consensus       241 ~~~~~~~~~ll~~~~~~  257 (454)
                          ++|+++......|
T Consensus       261 ----~~~~~l~~~~~~p  273 (320)
T d1xjda_         261 ----INWEELERKEIDP  273 (320)
T ss_dssp             ----CCHHHHHTTCSCC
T ss_pred             ----CCHHHHHhcCCCC
Confidence                4566665544433

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.5e-33  Score=279.93  Aligned_cols=169  Identities=24%  Similarity=0.349  Sum_probs=127.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++|||||||||+|||++.+|.+||+|||+|+.+..                           
T Consensus       107 ~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~---------------------------  159 (364)
T d1omwa3         107 ADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSK---------------------------  159 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSS---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCC---------------------------
Confidence            46899999999999999999999999999999999999999999999985421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|+|||++..  +..|+.++  ||||+              ||++|||++|+.               |+
T Consensus       160 ~~~~~~~GT~~y~APE~~~~--~~~~~~~~--DiwSl--------------GvilyemltG~~---------------Pf  206 (364)
T d1omwa3         160 KKPHASVGTHGYMAPEVLQK--GVAYDSSA--DWFSL--------------GCMLFKLLRGHS---------------PF  206 (364)
T ss_dssp             SCCCSCCSCGGGCCHHHHST--TCCCCTHH--HHHHH--------------HHHHHHHHHSSC---------------SS
T ss_pred             CcccccccccccchhHHhhc--CCCCCccc--chhHH--------------HHHHHHHHhCCC---------------CC
Confidence            22345689999999999862  45688888  99999              999999877654               33


Q ss_pred             CCchhhh--hhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCC-----hhhhhcCccc
Q psy7309         162 TGSNVQK--SLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPS-----SEQNLCQPIS  234 (454)
Q Consensus       162 ~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpt-----a~e~l~hp~f  234 (454)
                      .+.....  .+.+........+|..             .++.+.+||     .+||+.||++|||     |+|+++||||
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~s~~~~~li-----~~~L~~dP~~R~t~~~~~a~eil~Hp~f  268 (364)
T d1omwa3         207 RQHKTKDKHEIDRMTLTMAVELPDS-------------FSPELRSLL-----EGLLQRDVNRRLGCLGRGAQEVKESPFF  268 (364)
T ss_dssp             CSSCSSCHHHHHHHSSSCCCCCCSS-------------SCHHHHHHH-----HHHTCSSTTTSTTTSSSTHHHHHTSGGG
T ss_pred             CCCCHHHHHHHHHhcccCCCCCCCC-------------CCHHHHHHH-----HHHcccCHHHhCCCcccCHHHHHcCccc
Confidence            2221111  1111111233333333             237788899     9999999999999     7999999999


Q ss_pred             ccCCCCCCCccCccccccCCCC
Q psy7309         235 LEGSSSGLSVLGSEQLLTCDHI  256 (454)
Q Consensus       235 ~~~~~~~~~~~~~~~ll~~~~~  256 (454)
                      ..        ++|..+......
T Consensus       269 ~~--------i~~~~~~~~~~~  282 (364)
T d1omwa3         269 RS--------LDWQMVFLQKYP  282 (364)
T ss_dssp             TT--------CCHHHHHTTCSC
T ss_pred             cC--------CCHHHHhcCCCC
Confidence            74        566666554443

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-33  Score=272.11  Aligned_cols=161  Identities=26%  Similarity=0.348  Sum_probs=124.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC----CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED----HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAF   77 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~----~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++    .+||+|||+|.....                       
T Consensus       113 ~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~-----------------------  169 (293)
T d1jksa_         113 EEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDF-----------------------  169 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTT-----------------------
T ss_pred             hHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCC-----------------------
Confidence            46899999999999999999999999999999998776    499999999985531                       


Q ss_pred             ccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhc
Q psy7309          78 YSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRE  157 (454)
Q Consensus        78 ~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~  157 (454)
                         ........||+.|+|||++.   +..|+.++  ||||+              ||++|||++|+.             
T Consensus       170 ---~~~~~~~~~t~~y~APE~~~---~~~~~~~~--DiwSl--------------Gvilyell~g~~-------------  214 (293)
T d1jksa_         170 ---GNEFKNIFGTPEFVAPEIVN---YEPLGLEA--DMWSI--------------GVITYILLSGAS-------------  214 (293)
T ss_dssp             ---SCBCSCCCCCGGGCCHHHHT---TCCBCTHH--HHHHH--------------HHHHHHHHHSSC-------------
T ss_pred             ---CccccccCCCCcccCHHHHc---CCCCCCcc--cchhh--------------hHHHHHHHcCCC-------------
Confidence               22344568999999999998   67789888  99999              999999876543             


Q ss_pred             CCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         158 NGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       158 ~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                        |+.+.+....+..+.... ..++...    +     ...++.+.+||     ++||+.||++|||++|+|+||||+..
T Consensus       215 --Pf~~~~~~~~~~~i~~~~-~~~~~~~----~-----~~~s~~~~~li-----~~~L~~dP~~R~s~~eil~hp~~~~~  277 (293)
T d1jksa_         215 --PFLGDTKQETLANVSAVN-YEFEDEY----F-----SNTSALAKDFI-----RRLLVKDPKKRMTIQDSLQHPWIKPK  277 (293)
T ss_dssp             --SSCCSSHHHHHHHHHTTC-CCCCHHH----H-----TTSCHHHHHHH-----HTTSCSSGGGSCCHHHHHHSTTTCC-
T ss_pred             --CCCCCCHHHHHHHHHhcC-CCCCchh----c-----CCCCHHHHHHH-----HHHccCChhHCcCHHHHhcCcccCCC
Confidence              444544444444444322 2222211    0     12346778888     99999999999999999999999753

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=9.1e-33  Score=274.47  Aligned_cols=185  Identities=21%  Similarity=0.319  Sum_probs=130.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++ .+||+|||+|+...                          .
T Consensus       122 ~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~--------------------------~  175 (350)
T d1q5ka_         122 IYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLV--------------------------R  175 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECC--------------------------T
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhcc--------------------------C
Confidence            46889999999999999999999999999999999775 89999999987542                          1


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch-----hhHHHHHHHhh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP-----KTLEELKHNIR  155 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~-----~~~~~l~~~i~  155 (454)
                      .......+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++     ...+.+..++.
T Consensus       176 ~~~~~~~~gt~~y~aPE~~~~--~~~~~~~~--DIwSl--------------G~il~el~~g~~pf~~~~~~~~l~~i~~  237 (350)
T d1q5ka_         176 GEPNVSYICSRYYRAPELIFG--ATDYTSSI--DVWSA--------------GCVLAELLLGQPIFPGDSGVDQLVEIIK  237 (350)
T ss_dssp             TSCCCSCCSCTTSCCHHHHTT--CSSCCTHH--HHHHH--------------HHHHHHHHHTSCSSCCSSHHHHHHHHHH
T ss_pred             CcccccccccccccChHHhhc--ccCCCcce--eeccc--------------ceEEEehhhCCCCCCCCCHHHHHHHHHH
Confidence            223445689999999999862  45688888  99999              999999777654     22334444444


Q ss_pred             hcCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         156 RENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       156 ~~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      ..+.|.. .........+   ....++... ...|........++.+.+||     .+||+.||++||||+|+|+||||.
T Consensus       238 ~~g~~~~-~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~s~~~~dLl-----~~mL~~dP~~R~ta~e~L~Hp~f~  307 (350)
T d1q5ka_         238 VLGTPTR-EQIREMNPNY---TEFKFPQIK-AHPWTKVFRPRTPPEAIALC-----SRLLEYTPTARLTPLEACAHSFFD  307 (350)
T ss_dssp             HHCCCCH-HHHHHHCC------CCCCCCCC-CCCGGGTSCTTSCHHHHHHH-----HHHSCSSGGGSCCHHHHHTSGGGG
T ss_pred             HhCCChH-Hhhhhhccch---hhccccccc-cCchhhhcccCCCHHHHHHH-----HHHccCChhHCcCHHHHhcCHhhc
Confidence            3333322 1121111111   111222211 12344333344557788888     999999999999999999999998


Q ss_pred             cCCCC
Q psy7309         236 EGSSS  240 (454)
Q Consensus       236 ~~~~~  240 (454)
                      +...+
T Consensus       308 ~~~~~  312 (350)
T d1q5ka_         308 ELRDP  312 (350)
T ss_dssp             GGGCT
T ss_pred             cccCC
Confidence            76554

>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: ATP phosphoribosyltransferase regulatory subunit HisZ
species: Lactococcus lactis [TaxId: 1358]

Probab=99.97  E-value=4e-32  Score=266.30  Aligned_cols=144  Identities=15%  Similarity=0.226  Sum_probs=126.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc---c-----ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA---T-----SETTASVMTRGGSIVTLPHDLRIPFARYLAQN  380 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~---~-----~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~  380 (454)
                      |.+...+++|+++++++|++|||.+|.||+||+.+++..   .     .+++|+|.|++|+.++||||+|+|+||++|++
T Consensus        12 ~~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~   91 (318)
T d1z7ma1          12 LNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQI   91 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCCccEEEeeccccchHHHHHHHh
Confidence            777888999999999999999999999999999997642   1     25799999999999999999999999999976


Q ss_pred             CCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         381 GSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       381 ~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                      ....|.|+||+|+|||++++++|++|||+|+|+|+||.+ +..+|+|+|.++.++|+.+|++++.|+|||+++
T Consensus        92 ~~~~~~r~~Y~g~vfR~~~~~~~r~rE~~Q~g~EiiG~~-~~~ad~Eii~l~~e~l~~lgi~~~~i~i~~~~l  163 (318)
T d1z7ma1          92 KDSTSARYSYFGKIFRKEKRHKGRSTENYQIGIELFGES-ADKSELEILSLALQVIEQLGLNKTVFEIGSAKF  163 (318)
T ss_dssp             CSCCCEEEEEEEECCCCCC-------CCEEEEEEEESSC-HHHHHHHHHHHHHHHHHHHTCSSEEEEEEEHHH
T ss_pred             cccCCcccccccceeEEccccccccchhhhhheeccccc-hhhHHHHHHHHHHHHHHHhhhccccccchhhhH
Confidence            546789999999999999999999999999999999988 889999999999999999999999999999864

>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=1.1e-31  Score=264.31  Aligned_cols=154  Identities=16%  Similarity=0.150  Sum_probs=140.5

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-----ccccEEEEcCCCCeEeeC
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-----SETTASVMTRGGSIVTLP  366 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-----~~~~~~~~d~~G~~~~Lr  366 (454)
                      ++..+++|++       |.+...+++|+++++++|++|||.+|.||+||+++++..+     .+++|+|+|++|+.++||
T Consensus         5 ~~~~G~~D~~-------p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~g~~l~LR   77 (327)
T d1wu7a2           5 EKIRGFRDFY-------PEDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLI   77 (327)
T ss_dssp             CCCTTCCCBC-------HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEEC
T ss_pred             CCCCCCccCC-------HHHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhcccchhhccc
Confidence            4566778877       7888899999999999999999999999999999998543     368999999999999999


Q ss_pred             CCCCHHHHHHHHHcCC-CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCC-CCc
Q psy7309         367 HDLRIPFARYLAQNGS-IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNY-GNI  444 (454)
Q Consensus       367 ~d~T~p~aR~~a~~~~-~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~-~~~  444 (454)
                      ||+|+|+||+++.+.. ..|.|+||+|+|||+++++.|++|||+|||+||||.+ +..+|+|+|.++.++++.+|+ +.+
T Consensus        78 pD~T~~iar~~~~~~~~~~p~k~~y~g~VfR~~~~~~g~~re~~Q~G~EiiG~~-~~~~D~Eii~l~~~~l~~~~~~~~~  156 (327)
T d1wu7a2          78 PEATPSTVRMVTSRKDLQRPLRWYSFPKVWRYEEPQAGRYREHYQFNADIFGSD-SPEADAEVIALASSILDRLGLQDIY  156 (327)
T ss_dssp             SCSHHHHHHHHTTCTTCCSSEEEEECCEEECCCCSCSSCCSEEEEEEEEEESCC-SHHHHHHHHHHHHHHHHHTTTTTSE
T ss_pred             ccccchhhhHhhhhhhccccceeeccCcceeccccccCCcchhhhhhhhhcCCc-chHHHHHHHHHHHHHHhccccccce
Confidence            9999999999887543 6799999999999999999999999999999999988 999999999999999999999 678


Q ss_pred             EEEcCcccc
Q psy7309         445 SFAPHPRVL  453 (454)
Q Consensus       445 ~i~i~~~~~  453 (454)
                      .|++||+++
T Consensus       157 ~i~l~~~~i  165 (327)
T d1wu7a2         157 EIRINSRKI  165 (327)
T ss_dssp             EEEEEEHHH
T ss_pred             eecccchhh
Confidence            899999864

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.5e-32  Score=265.30  Aligned_cols=185  Identities=26%  Similarity=0.357  Sum_probs=125.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++|||||||||+|||++.++.+||+|||+|+....                         ..
T Consensus       102 ~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~-------------------------~~  156 (298)
T d1gz8a_         102 PLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGV-------------------------PV  156 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCC-------------------------CS
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccC-------------------------Cc
Confidence            46899999999999999999999999999999999999999999999986531                         22


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...++.++  ||||+              ||++|+|++|+.+     ..+.+...+..
T Consensus       157 ~~~~~~~gt~~y~apE~~~~--~~~~~~~~--DiwSl--------------Gvily~m~~G~~Pf~~~~~~~~~~~i~~~  218 (298)
T d1gz8a_         157 RTYTHEVVTLWYRAPEILLG--CKYYSTAV--DIWSL--------------GCIFAEMVTRRALFPGDSEIDQLFRIFRT  218 (298)
T ss_dssp             BCTTCCBCCCTTCCHHHHTT--CSSCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             ccceeecccceeeehhhhcc--ccCCCccc--ccccc--------------chhhhHHhhCCCCCCCCCHHHHHHHHHHh
Confidence            34455689999999999772  33456778  99999              8888887665542     22333333333


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      .+.|..... .. ..... .....++.... ..+.... ...++.+.+||     ++||+.||++|||++|+|+||||++
T Consensus       219 ~~~~~~~~~-~~-~~~~~-~~~~~~~~~~~-~~~~~~~-~~~s~~~~dll-----~~mL~~dP~~R~t~~ell~H~ff~~  288 (298)
T d1gz8a_         219 LGTPDEVVW-PG-VTSMP-DYKPSFPKWAR-QDFSKVV-PPLDEDGRSLL-----SQMLHYDPNKRISAKAALAHPFFQD  288 (298)
T ss_dssp             HCCCCTTTS-TT-GGGST-TCCTTSCCCCC-CCHHHHS-TTCCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSGGGTT
T ss_pred             cCCCchhhc-cc-ccccc-ccccccccccc-cchhhhc-cCCCHHHHHHH-----HHHccCChhHCcCHHHHhCCHhhcc
Confidence            333322211 11 00010 11111111110 1111111 12336677888     9999999999999999999999986


Q ss_pred             CCC
Q psy7309         237 GSS  239 (454)
Q Consensus       237 ~~~  239 (454)
                      ...
T Consensus       289 ~~~  291 (298)
T d1gz8a_         289 VTK  291 (298)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.3e-33  Score=273.51  Aligned_cols=163  Identities=23%  Similarity=0.327  Sum_probs=122.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.   .+.+||+|||+|+...                         
T Consensus       111 ~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~-------------------------  165 (335)
T d2ozaa1         111 REASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETT-------------------------  165 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECC-------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeecc-------------------------
Confidence            468999999999999999999999999999999986   4569999999998542                         


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                       ........+||+.|||||++.   +..|+.++  ||||+              ||++|+|++|++              
T Consensus       166 -~~~~~~~~~gt~~y~aPE~~~---~~~y~~~~--DiwSl--------------Gvily~lltg~~--------------  211 (335)
T d2ozaa1         166 -SHNSLTTPCYTPYYVAPEVLG---PEKYDKSC--DMWSL--------------GVIMYILLCGYP--------------  211 (335)
T ss_dssp             -CCCCCCCCSCCCSSCCCCCCC---GGGGSHHH--HHHHH--------------HHHHHHHTTSSC--------------
T ss_pred             -CCCccccccCCcccCCcHHHc---CCCCCHHH--HHHhh--------------chhHHHHhhCCC--------------
Confidence             123345578999999999998   77899999  99999              999999887765              


Q ss_pred             CCCCCchhhhhhhh---hccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         159 GPSTGSNVQKSLQK---FQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       159 ~p~~~~~~~~~~~~---~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                       |+.+.+.......   ........+|..    .|     ...++++.+||     ++||+.||++|||++|+|+||||.
T Consensus       212 -Pf~~~~~~~~~~~~~~~i~~~~~~~~~~----~~-----~~~s~~~~~li-----~~~L~~dP~~R~s~~eil~hp~~~  276 (335)
T d2ozaa1         212 -PFYSNHGLAISPGMKTRIRMGQYEFPNP----EW-----SEVSEEVKMLI-----RNLLKTEPTQRMTITEFMNHPWIM  276 (335)
T ss_dssp             -SCEETTCC--------CCCSCSSSCCTT----HH-----HHSCHHHHHHH-----HHHSCSSTTTSCCHHHHHHSHHHH
T ss_pred             -CCCCCCHHHHHHHHHHHHhcCCCCCCCc----cc-----ccCCHHHHHHH-----HHHccCChhHCcCHHHHHcCHHhh
Confidence             2222211111111   111222233322    11     12347788888     999999999999999999999998


Q ss_pred             cCC
Q psy7309         236 EGS  238 (454)
Q Consensus       236 ~~~  238 (454)
                      +..
T Consensus       277 ~~~  279 (335)
T d2ozaa1         277 QST  279 (335)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            544

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.97  E-value=2.2e-32  Score=263.90  Aligned_cols=181  Identities=25%  Similarity=0.362  Sum_probs=121.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++|||||||||+|||++.++.+||+|||.|.....                         ..
T Consensus       100 ~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~-------------------------~~  154 (286)
T d1ob3a_         100 VTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGI-------------------------PV  154 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------------------------
T ss_pred             hhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceeccc-------------------------Cc
Confidence            46899999999999999999999999999999999999999999999986532                         12


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...++.++  ||||+              ||++|||++|+++     ..+.+.+....
T Consensus       155 ~~~~~~~~~~~y~~pE~~~~--~~~~~~~~--Diwsl--------------Gv~l~el~~G~~pf~~~~~~~~~~~i~~~  216 (286)
T d1ob3a_         155 RKYTHEIVTLWYRAPDVLMG--SKKYSTTI--DIWSV--------------GCIFAEMVNGTPLFPGVSEADQLMRIFRI  216 (286)
T ss_dssp             -------CCCTTCCHHHHTT--CCSCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccceecccchhhhHHHHhC--CCCCCcce--eehhc--------------CcHHHHHHHCCCCCCCCCHHHHHHHHHHh
Confidence            23345578999999999872  35678888  99999              9999997776652     23333333333


Q ss_pred             cCCCCCCchh-hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         157 ENGPSTGSNV-QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       157 ~~~p~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+.|...... .....+..    ..+... ....|+.... ..++.+.+||     ++||+.||++||||+|+|+||||+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~-~~s~~~~dli-----~~~L~~dP~~R~s~~ell~Hp~f~  285 (286)
T d1ob3a_         217 LGTPNSKNWPNVTELPKYD----PNFTVY-EPLPWESFLK-GLDESGIDLL-----SKMLKLDPNQRITAKQALEHAYFK  285 (286)
T ss_dssp             HCCCCTTTSTTGGGSTTCC----TTCCCC-CCCCGGGTCC-SCCHHHHHHH-----HHHTCSSTTTSCCHHHHHTSGGGG
T ss_pred             hCCCChhhccchhhhhhcc----cccccc-cCcchhhhcc-cCCHHHHHHH-----HHHccCChhHCcCHHHHhcCcccC
Confidence            3333222111 00111110    000000 0112222222 2236677888     999999999999999999999997


Q ss_pred             c
Q psy7309         236 E  236 (454)
Q Consensus       236 ~  236 (454)
                      +
T Consensus       286 ~  286 (286)
T d1ob3a_         286 E  286 (286)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=4.6e-33  Score=267.20  Aligned_cols=149  Identities=28%  Similarity=0.428  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC-CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE-DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~-~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      ++++.+++||+.||+|||++||+||||||+|||++.+ +.+||+|||+|+...                           
T Consensus       110 ~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~---------------------------  162 (273)
T d1xwsa_         110 ELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLK---------------------------  162 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceecc---------------------------
Confidence            4688999999999999999999999999999999855 789999999997432                           


Q ss_pred             CCCCcCcccccceecccccccccccc-ccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAM-YNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~-~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      ....+..+||+.|+|||++.   +.. ++.++  ||||+              ||++|||++|+.               
T Consensus       163 ~~~~~~~~GT~~y~aPE~~~---~~~~~~~~~--DiwSl--------------Gvilyell~g~~---------------  208 (273)
T d1xwsa_         163 DTVYTDFDGTRVYSPPEWIR---YHRYHGRSA--AVWSL--------------GILLYDMVCGDI---------------  208 (273)
T ss_dssp             SSCBCCCCSCGGGSCHHHHH---HSCBCHHHH--HHHHH--------------HHHHHHHHHSSC---------------
T ss_pred             cccccccccCCCcCCHHHHc---CCCCCCccc--ccccc--------------eeeehhHhhCCC---------------
Confidence            12344578999999999987   344 46677  99999              999999877654               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      |+....  .    +. .....++..             .++++.+||     ++||+.||++|||++|+|+||||+.
T Consensus       209 Pf~~~~--~----i~-~~~~~~~~~-------------~s~~~~~li-----~~~L~~dp~~R~s~~eil~hp~~~~  260 (273)
T d1xwsa_         209 PFEHDE--E----II-RGQVFFRQR-------------VSSECQHLI-----RWCLALRPSDRPTFEEIQNHPWMQD  260 (273)
T ss_dssp             SCCSHH--H----HH-HCCCCCSSC-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHHTSGGGSS
T ss_pred             CCCCch--H----Hh-hcccCCCCC-------------CCHHHHHHH-----HHHccCCHhHCcCHHHHhcCHhhCC
Confidence            222111  0    00 112223333             237778898     9999999999999999999999984

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.97  E-value=1.7e-32  Score=263.70  Aligned_cols=163  Identities=24%  Similarity=0.388  Sum_probs=124.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+.+..                          .
T Consensus       110 ~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~--------------------------~  163 (277)
T d1phka_         110 KETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDP--------------------------G  163 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCT--------------------------T
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccC--------------------------C
Confidence            47899999999999999999999999999999999999999999999986531                          2


Q ss_pred             CCCcCcccccceecccccccc---ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          82 TSHTGQVGTALYAAPELDSHG---VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~---~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      ...+..+||+.|+|||++...   ....|+.++  ||||+              ||++|||++|+.              
T Consensus       164 ~~~~~~~gt~~y~~PE~~~~~~~~~~~~~~~~~--Diwsl--------------Gvilyeml~g~~--------------  213 (277)
T d1phka_         164 EKLREVCGTPSYLAPEIIECSMNDNHPGYGKEV--DMWST--------------GVIMYTLLAGSP--------------  213 (277)
T ss_dssp             CCBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHH--HHHHH--------------HHHHHHHHHSSC--------------
T ss_pred             CceeeeeccCCCCCHHHhhccccccCCCCCchh--eEccc--------------chhhhhhccCCC--------------
Confidence            234557899999999998621   234567778  99999              999999876653              


Q ss_pred             CCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         159 GPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       159 ~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                       |+.+.+.......+.... ..++...    +     ...++++.+||     ++||+.||++|||++|+|+||||++
T Consensus       214 -Pf~~~~~~~~~~~i~~~~-~~~~~~~----~-----~~~s~~~~~li-----~~~L~~~p~~R~s~~eil~h~~~~~  275 (277)
T d1phka_         214 -PFWHRKQMLMLRMIMSGN-YQFGSPE----W-----DDYSDTVKDLV-----SRFLVVQPQKRYTAEEALAHPFFQQ  275 (277)
T ss_dssp             -SSCCSSHHHHHHHHHHTC-CCCCTTT----G-----GGSCHHHHHHH-----HHHCCSSGGGSCCHHHHTTSGGGCT
T ss_pred             -CCCCCCHHHHHHHHHhCC-CCCCCcc----c-----ccCCHHHHHHH-----HHHccCChhHCcCHHHHHcCHHHHH
Confidence             444444444444443222 1122110    1     12347788898     9999999999999999999999985

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.3e-32  Score=267.65  Aligned_cols=186  Identities=22%  Similarity=0.299  Sum_probs=121.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||.|||++||+||||||+|||++.++.+||+|||+|+.+.....                     ...
T Consensus       117 ~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~---------------------~~~  175 (318)
T d3blha1         117 SEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKN---------------------SQP  175 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC--------------------------C
T ss_pred             HHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeecccccc---------------------ccc
Confidence            46889999999999999999999999999999999999999999999975432110                     122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  ...|+.++  ||||+              ||++|||++|++.     ....+......
T Consensus       176 ~~~~~~~gT~~Y~aPE~~~~--~~~~~~k~--DiwSl--------------Gvil~el~~g~~pf~~~~~~~~~~~i~~~  237 (318)
T d3blha1         176 NRYTNRVVTLWYRPPELLLG--ERDYGPPI--DLWGA--------------GCIMAEMWTRSPIMQGNTEQHQLALISQL  237 (318)
T ss_dssp             CCCCSCCSCGGGCCHHHHTT--CSSCCTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             ccccceecCHHHhhHHHHcC--CCCCCcHH--HcccC--------------CceeeeHhhCCCCCCCCCHHHHHHHHHHh
Confidence            33445689999999999872  34688888  99999              9999997766542     22222222222


Q ss_pred             cCCCCCCchhh----hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         157 ENGPSTGSNVQ----KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       157 ~~~p~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      .+.+.......    .....+.....  .+..    ..+.+.....++.+.+||     .+||++||++||||+|+|+||
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~dLl-----~~mL~~dP~~R~sa~elL~Hp  306 (318)
T d3blha1         238 CGSITPEVWPNVDNYELYEKLELVKG--QKRK----VKDRLKAYVRDPYALDLI-----DKLLVLDPAQRIDSDDALNHD  306 (318)
T ss_dssp             HCCCCTTTSTTCCCC-------CCSS--CCBC----HHHHHHHHHCCHHHHHHH-----HHHSCSSTTTSCCHHHHHHSG
T ss_pred             cCCCChhhccccchhhhhhhhccccc--cccc----chhhhccccCCHHHHHHH-----HHHCcCChhHCcCHHHHHcCh
Confidence            22222111000    00000000000  0000    000111112235566777     999999999999999999999


Q ss_pred             ccccC
Q psy7309         233 ISLEG  237 (454)
Q Consensus       233 ~f~~~  237 (454)
                      ||.+.
T Consensus       307 ff~~~  311 (318)
T d3blha1         307 FFWSD  311 (318)
T ss_dssp             GGSSS
T ss_pred             hhccC
Confidence            99853

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.9e-32  Score=266.76  Aligned_cols=187  Identities=29%  Similarity=0.387  Sum_probs=126.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++|||||||||+|||++.++.+||+|||+|+......                      ...
T Consensus       109 ~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~----------------------~~~  166 (345)
T d1pmea_         109 DHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDH----------------------DHT  166 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGG----------------------CBC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCC----------------------ccc
Confidence            4688999999999999999999999999999999999999999999997543211                      122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ......+||+.|+|||++..  +..|+.++  ||||+              ||++|||++|+++     ..+.....+..
T Consensus       167 ~~~~~~~gt~~y~aPE~l~~--~~~~~~~~--DiwSl--------------G~il~eml~g~~pf~~~~~~~~~~~~~~~  228 (345)
T d1pmea_         167 GFLTEYVATRWYRAPEIMLN--SKGYTKSI--DIWSV--------------GCILAEMLSNRPIFPGKHYLDQLNHILGI  228 (345)
T ss_dssp             CTTCCCCSCGGGCCGGGTTT--BCSCSTHH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             eeeccccccceechHHHhhc--CCCCCchh--hhhcc--------------CceehHHhhCCCCCCCCCHHHHHHHHhhh
Confidence            33456789999999999862  45678888  99999              9999997766542     12222222222


Q ss_pred             cCCCCCCchhh----hhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         157 ENGPSTGSNVQ----KSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       157 ~~~p~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      ...|.......    .......     ..+.. ....|....+. .++.+.+||     .+||+.||++||||+|+|+||
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~-~s~~~~~li-----~~~L~~dP~~R~ta~e~L~hp  296 (345)
T d1pmea_         229 LGSPSQEDLNCIINLKARNYLL-----SLPHK-NKVPWNRLFPN-ADSKALDLL-----DKMLTFNPHKRIEVEQALAHP  296 (345)
T ss_dssp             HCSCCHHHHHTCCCHHHHHHHH-----TSCCC-CCCCHHHHCTT-SCHHHHHHH-----HHHSCSSTTTSCCHHHHHTSG
T ss_pred             ccCCChhhhhhhhhhhhhcccc-----cCCcc-CCCCHHHhCCC-CCHHHHHHH-----HHHccCChhHCcCHHHHhcCH
Confidence            22221111000    0000000     00100 00123332222 236677888     999999999999999999999


Q ss_pred             ccccCCCC
Q psy7309         233 ISLEGSSS  240 (454)
Q Consensus       233 ~f~~~~~~  240 (454)
                      ||.+...+
T Consensus       297 f~~~~~~~  304 (345)
T d1pmea_         297 YLEQYYDP  304 (345)
T ss_dssp             GGTTTCCG
T ss_pred             hhccCCCC
Confidence            99866543

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3e-31  Score=262.83  Aligned_cols=176  Identities=27%  Similarity=0.384  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+...                            
T Consensus       121 ~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~----------------------------  172 (346)
T d1cm8a_         121 DRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQAD----------------------------  172 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccC----------------------------
Confidence            4689999999999999999999999999999999999999999999997432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ...+..+||+.|+|||++..  ...++.++  ||||+              ||++|||++|+++     ....+......
T Consensus       173 ~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--DiwSl--------------Gvil~ell~g~~pf~~~~~~~~~~~~~~~  234 (346)
T d1cm8a_         173 SEMTGYVVTRWYRAPEVILN--WMRYTQTV--DIWSV--------------GCIMAEMITGKTLFKGSDHLDQLKEIMKV  234 (346)
T ss_dssp             SSCCSSCSCGGGCCTHHHHT--TTCCCTTH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             CccccccccccccCHHHHcC--CCCCCccc--hhhcc--------------hHHHHHHHHCcCCCCCCChHHHHHHHHhc
Confidence            23456789999999999871  34567888  99999              9999997776542     22233222222


Q ss_pred             cCCCCCCc-------hhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         157 ENGPSTGS-------NVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       157 ~~~p~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      .+.|+...       ........+......         .|..... ..++.+.+||     ++||..||++||||+|+|
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~-~~s~~~~dli-----~~mL~~dP~~R~ta~eiL  299 (346)
T d1cm8a_         235 TGTPPAEFVQRLQSDEAKNYMKGLPELEKK---------DFASILT-NASPLAVNLL-----EKMLVLDAEQRVTAGEAL  299 (346)
T ss_dssp             HCCCCHHHHHTCSCHHHHHHHHHSCCCCCC---------CGGGTCT-TCCHHHHHHH-----HHHSCSSTTTSCCHHHHH
T ss_pred             cCCCcHHHHhhhcchhhhhhhccCCccccc---------chHHhcc-CCCHHHHHHH-----HHHCcCChhHCcCHHHHh
Confidence            22222110       000011111111111         1222221 2236677888     999999999999999999


Q ss_pred             cCcccccCC
Q psy7309         230 CQPISLEGS  238 (454)
Q Consensus       230 ~hp~f~~~~  238 (454)
                      +||||....
T Consensus       300 ~Hp~f~~~~  308 (346)
T d1cm8a_         300 AHPYFESLH  308 (346)
T ss_dssp             HSGGGTTTC
T ss_pred             cChhhCcCC
Confidence            999998654

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.8e-32  Score=261.61  Aligned_cols=158  Identities=24%  Similarity=0.345  Sum_probs=124.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++++++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                        ...
T Consensus       109 ~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~------------------------~~~  164 (272)
T d1qpca_         109 NKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIED------------------------NEY  164 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSS------------------------SCE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccC------------------------Ccc
Confidence            46889999999999999999999999999999999999999999999985532                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-chhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-RPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|||||++.   +..|+.++  ||||+              ||++|||+++ .+               |
T Consensus       165 ~~~~~~~gt~~y~APE~~~---~~~~~~~s--DvwS~--------------Gvvl~ellt~~~~---------------~  210 (272)
T d1qpca_         165 TAREGAKFPIKWTAPEAIN---YGTFTIKS--DVWSF--------------GILLTEIVTHGRI---------------P  210 (272)
T ss_dssp             ECCTTCCCCTTTSCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             ccccccCCcccccChHHHh---CCCCCchh--hhhhh--------------HHHHHHHHhCCCC---------------C
Confidence            2334568899999999998   67789888  99999              9999998763 32               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc--Ccccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC--QPISL  235 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~--hp~f~  235 (454)
                      +...........+........|...             ++.+.+|+     .+||+.||++|||++|+++  |+||.
T Consensus       211 ~~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~~P~~Rpt~~ei~~~L~~~ft  269 (272)
T d1qpca_         211 YPGMTNPEVIQNLERGYRMVRPDNC-------------PEELYQLM-----RLCWKERPEDRPTFDYLRSVLEDFFT  269 (272)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCCCcccC-------------hHHHHHHH-----HHHcCCCHhHCcCHHHHHHHhhhhhh
Confidence            3333444445555544444444442             26677888     9999999999999999988  78886

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.2e-31  Score=255.89  Aligned_cols=184  Identities=22%  Similarity=0.286  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++|++.||+|||++||+||||||+|||++.++.+||+|||.|+....                         ..
T Consensus       101 ~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~-------------------------~~  155 (292)
T d1unla_         101 EIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGI-------------------------PV  155 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCS-------------------------CC
T ss_pred             hHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccC-------------------------CC
Confidence            46889999999999999999999999999999999999999999999985431                         22


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      .......+++.|+|||++..  ...++.++  ||||+              ||++|||++|+.+     ...+....+..
T Consensus       156 ~~~~~~~~~~~~~~pe~~~~--~~~~~~~~--DiwSl--------------G~il~ell~g~~p~~~~~~~~~~~~~~~~  217 (292)
T d1unla_         156 RCYSAEVVTLWYRPPDVLFG--AKLYSTSI--DMWSA--------------GCIFAELANAGRPLFPGNDVDDQLKRIFR  217 (292)
T ss_dssp             SCCCSCCSCGGGCCHHHHTT--CSCCCTHH--HHHHH--------------HHHHHHHTTTSCCSCCCSSHHHHHHHHHH
T ss_pred             ccceeeccccchhhhhHhcc--CCCCCchh--hcccc--------------chHHHHHhhCCCCCCCCCCHHHHHHHHHh
Confidence            23444577899999999872  33467888  99999              9999997765431     22222233333


Q ss_pred             cCCCCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCccccc
Q psy7309         157 ENGPSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLE  236 (454)
Q Consensus       157 ~~~p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~  236 (454)
                      ..++.....+...............+...   .... .....++.+.+||     ++||+.||++||||+|+|+||||++
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~s~~~~dll-----~~mL~~dP~~R~sa~e~L~Hp~f~~  288 (292)
T d1unla_         218 LLGTPTEEQWPSMTKLPDYKPYPMYPATT---SLVN-VVPKLNATGRDLL-----QNLLKCNPVQRISAEEALQHPYFSD  288 (292)
T ss_dssp             HHCCCCTTTCTTGGGSTTCCCCCCCCTTC---CCTT-TSTTCCHHHHHHH-----HHHSCSSGGGSCCHHHHTTSGGGSS
T ss_pred             hcCCCChhhhhhhhhcccccccccccccc---hhhh-ccccCCHHHHHHH-----HHHccCChhHCcCHHHHhcChhhcC
Confidence            33332222221111111111111111110   0001 1122346677888     9999999999999999999999985


Q ss_pred             C
Q psy7309         237 G  237 (454)
Q Consensus       237 ~  237 (454)
                      .
T Consensus       289 ~  289 (292)
T d1unla_         289 F  289 (292)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.8e-32  Score=262.18  Aligned_cols=156  Identities=21%  Similarity=0.305  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.++.||+.||+|||++|||||||||+|||++.++++||+|||+|+.....                       ...
T Consensus       134 ~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~-----------------------~~~  190 (299)
T d1ywna1         134 EHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKD-----------------------PDY  190 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECC------CCSC-----------------------TTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCCCcEEEccCcchhhcccc-----------------------ccc
Confidence            468899999999999999999999999999999999999999999999854321                       122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...+..+||+.|||||++.   +..|+.++  ||||+              ||++|||+++..              .|+
T Consensus       191 ~~~~~~~gt~~y~APE~l~---~~~~~~~s--DiwS~--------------Gvil~ellt~~~--------------~p~  237 (299)
T d1ywna1         191 VRKGDARLPLKWMAPETIF---DRVYTIQS--DVWSF--------------GVLLWEIFSLGA--------------SPY  237 (299)
T ss_dssp             CCTTSCCCGGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSC--------------CSS
T ss_pred             cccCceeeCccccchhHhh---cCCCCccc--ceeeh--------------HHHHHHHHhCCC--------------CCC
Confidence            3345578999999999998   67889888  99999              999999875321              133


Q ss_pred             CCchh-hhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNV-QKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+... ......+.....+..|...             ++++.+++     .+||+.||++|||++|+++|
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         238 PGVKIDEEFCRRLKEGTRMRAPDYT-------------TPEMYQTM-----LDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             TTCCCSHHHHHHHHHTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCCCCCCccC-------------CHHHHHHH-----HHHcCCChhHCcCHHHHHHH
Confidence            33222 2222333334444444432             26677888     99999999999999999876

>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=5.3e-30  Score=251.71  Aligned_cols=154  Identities=12%  Similarity=0.186  Sum_probs=135.7

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCCCCeE
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRGGSIV  363 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~G~~~  363 (454)
                      ++..+++|++       |.+...+++|++++.++|++|||.+|+||+||++++|..+        .+++|+|.|.+|+.+
T Consensus         3 ~~~kG~rD~~-------p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~g~~l   75 (324)
T d1h4vb2           3 RAVRGTKDLF-------GKELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSL   75 (324)
T ss_dssp             CCCTTCCCCC-------HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTTSCEE
T ss_pred             CCCCCCcCCC-------HHHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhccCCccc
Confidence            3456677777       7888899999999999999999999999999999998652        267999999999999


Q ss_pred             eeCCCCCHHHHHHHHHcCC---CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Q psy7309         364 TLPHDLRIPFARYLAQNGS---IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFN  440 (454)
Q Consensus       364 ~Lr~d~T~p~aR~~a~~~~---~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~  440 (454)
                      +||||+|+|+||+++.+..   ..|+|+||+|+|||+++++.|++|||+|+|+|++|.+ +..+|+|++.+++++++.+|
T Consensus        76 ~LRpD~T~~iar~~~~~~~~~~~~p~r~~Y~g~VfR~~~~~~gr~re~~Q~g~EiiG~~-~~~ad~Eii~l~~~~l~~l~  154 (324)
T d1h4vb2          76 TLRPEGTAAMVRAYLEHGMKVWPQPVRLWMAGPMFRAERPQKGRYRQFHQVNYEALGSE-NPILDAEAVVLLYECLKELG  154 (324)
T ss_dssp             EECCCSHHHHHHHHHHTTGGGSSSSEEEEEEEEEECCCCC----CCEEEEEEEEEESCC-CHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccHHHHHHHHhhhhhhchhhhheeeCcccccCcccCCCcceeccccccccCCC-ChHHHHHHHHHHHHHHHHhc
Confidence            9999999999998875431   4789999999999999999999999999999999998 99999999999999999999


Q ss_pred             CCCcEEEcCcccc
Q psy7309         441 YGNISFAPHPRVL  453 (454)
Q Consensus       441 ~~~~~i~i~~~~~  453 (454)
                      ++++.+.||+.++
T Consensus       155 ~~~~~~~i~~~~~  167 (324)
T d1h4vb2         155 LRRLKVKLSSVGD  167 (324)
T ss_dssp             CCSCEEEEEECCC
T ss_pred             ccCcceeeeccCc
Confidence            9999999998764

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.4e-32  Score=264.44  Aligned_cols=155  Identities=22%  Similarity=0.291  Sum_probs=118.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++|||||||||+|||++.++++||+|||+|+.....                       ...
T Consensus       164 ~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~-----------------------~~~  220 (325)
T d1rjba_         164 EDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSD-----------------------SNY  220 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGC-----------------------TTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCchhccccccCCeEEEeeccccccccCC-----------------------Cce
Confidence            358889999999999999999999999999999999999999999999865321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|||||++.   +..|+.++  ||||+              ||++|||++ |++               |
T Consensus       221 ~~~~~~~gt~~y~aPE~l~---~~~~~~~~--DiwS~--------------Gvil~emlt~g~~---------------P  266 (325)
T d1rjba_         221 VVRGNARLPVKWMAPESLF---EGIYTIKS--DVWSY--------------GILLWEIFSLGVN---------------P  266 (325)
T ss_dssp             EEETTEEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHTTTSCC---------------S
T ss_pred             eeeccccCCCccCChHHHc---CCCCCcce--eccch--------------hHHHHHHHhCCCC---------------C
Confidence            2234568899999999998   67899999  99999              999999875 443               3


Q ss_pred             CCCchhhhhhh-hhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQ-KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.+....+. .+........|...             ++++.+||     .+||+.||++|||++|+++|
T Consensus       267 f~~~~~~~~~~~~~~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         267 YPGIPVDANFYKLIQNGFKMDQPFYA-------------TEEIYIIM-----QSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             STTCCCSHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCCCCCCcC-------------CHHHHHHH-----HHHcCCChhHCcCHHHHHHH
Confidence            44333322222 22223333334332             36678888     99999999999999999875

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.96  E-value=1.3e-31  Score=263.55  Aligned_cols=183  Identities=21%  Similarity=0.296  Sum_probs=119.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCC-CeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYED-HVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSH   80 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~-~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++ .+||+|||+|+...                          .
T Consensus       129 ~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~--------------------------~  182 (328)
T d3bqca1         129 YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYH--------------------------P  182 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECC--------------------------T
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceecc--------------------------C
Confidence            46899999999999999999999999999999998765 58999999997542                          1


Q ss_pred             CCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch------hhHHHHHHHh
Q psy7309          81 DTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP------KTLEELKHNI  154 (454)
Q Consensus        81 ~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~------~~~~~l~~~i  154 (454)
                      .......+||+.|+|||++..  ...|+.++  ||||+              ||++||++.|+.      ...+......
T Consensus       183 ~~~~~~~~~t~~y~aPE~~~~--~~~~~~~~--Diwsl--------------G~~l~e~~~g~~pf~~~~~~~~~~~~i~  244 (328)
T d3bqca1         183 GQEYNVRVASRYFKGPELLVD--YQMYDYSL--DMWSL--------------GCMLASMIFRKEPFFHGHDNYDQLVRIA  244 (328)
T ss_dssp             TCCCCSCCSCGGGCCHHHHTT--CCCCCTHH--HHHHH--------------HHHHHHHHHTCSSSSCCSSHHHHHHHHH
T ss_pred             CCcccccccCccccCcccccC--CCCCCccc--chhhh--------------hhhhHHhccCCCCCCCCchhHHHHHHHH
Confidence            233456789999999999872  34578888  99999              999999665443      1122222221


Q ss_pred             hhcCCCCCCchhhhhhhhhccCCCCCCCcc---ccccccccc----cccccccchhHHHHHHHHhhhcCCCCCCCCChhh
Q psy7309         155 RRENGPSTGSNVQKSLQKFQKSPPSVYREW---RSSFEWSTV----RNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQ  227 (454)
Q Consensus       155 ~~~~~p~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~----~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e  227 (454)
                      ...+.|.    ...............+...   .....|...    .....++++.+||     ++||++||++||||+|
T Consensus       245 ~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dli-----~~mL~~dP~~R~ta~e  315 (328)
T d3bqca1         245 KVLGTED----LYDYIDKYNIELDPRFNDILGRHSRKRWERFVHSENQHLVSPEALDFL-----DKLLRYDHQSRLTARE  315 (328)
T ss_dssp             HHHCHHH----HHHHHHHTTCCCCGGGGGTCCCCCCCCGGGGCCTTTGGGCCHHHHHHH-----HHHSCSSGGGSCCHHH
T ss_pred             HHHCCch----hhhhhhhcccccCcccchhcccccccchhhcccccccccCCHHHHHHH-----HHHccCChhHCcCHHH
Confidence            1111110    0000000000000000000   000111111    1122346677888     9999999999999999


Q ss_pred             hhcCcccccC
Q psy7309         228 NLCQPISLEG  237 (454)
Q Consensus       228 ~l~hp~f~~~  237 (454)
                      +|+||||...
T Consensus       316 ~L~Hp~F~~v  325 (328)
T d3bqca1         316 AMEHPYFYTV  325 (328)
T ss_dssp             HHTSGGGTTS
T ss_pred             HhcCcccCCC
Confidence            9999999854

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.2e-32  Score=258.52  Aligned_cols=161  Identities=27%  Similarity=0.344  Sum_probs=112.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+.+++.||+.||+|||++|||||||||+|||++.++++||+|||+|+.....                       ...
T Consensus       104 ~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~-----------------------~~~  160 (276)
T d1uwha_         104 IKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRW-----------------------SGS  160 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeecccc-----------------------CCc
Confidence            467899999999999999999999999999999999999999999999754321                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...+...||+.|||||++.......|+.++  ||||+              ||++|||++|+.               |+
T Consensus       161 ~~~~~~~gt~~y~APE~l~~~~~~~~~~~s--DiwS~--------------Gv~l~el~tg~~---------------Pf  209 (276)
T d1uwha_         161 HQFEQLSGSILWMAPEVIRMQDKNPYSFQS--DVYAF--------------GIVLYELMTGQL---------------PY  209 (276)
T ss_dssp             -----CCCCGGGCCHHHHTTCSSCCCCHHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             ccccccccCcccCCHHHHhcccCCCCCchh--hhhhh--------------HHHHHHHHHCCC---------------CC
Confidence            234567899999999998743345688888  99999              999999877654               33


Q ss_pred             CCchhhh-hhhhhccCC-CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQK-SLQKFQKSP-PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~-~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+..... ....+.... .+..+...          ...++.+.+++     .+||+.||++|||++|++++
T Consensus       210 ~~~~~~~~~~~~~~~~~~~p~~~~~~----------~~~~~~l~~li-----~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         210 SNINNRDQIIFMVGRGYLSPDLSKVR----------SNCPKAMKRLM-----AECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             TTCCCHHHHHHHHHHTSCCCCGGGSC----------TTCCHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCChHHHHHHHHhcCCCCCcchhcc----------ccchHHHHHHH-----HHHcCCCHhHCcCHHHHHHH
Confidence            2222111 111111111 11111111          11236677888     99999999999999999875

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9e-32  Score=258.71  Aligned_cols=159  Identities=19%  Similarity=0.226  Sum_probs=122.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+......                      ...
T Consensus       107 ~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~----------------------~~~  164 (277)
T d1xbba_         107 KNIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADE----------------------NYY  164 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTC----------------------SEE
T ss_pred             HHHHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccc----------------------ccc
Confidence            4688999999999999999999999999999999999999999999998543210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|||||++.   +..|+.++  ||||+              ||++||+++ |++               |
T Consensus       165 ~~~~~~~gt~~y~APE~l~---~~~~~~~s--DiwS~--------------Gv~l~ellt~g~~---------------P  210 (277)
T d1xbba_         165 KAQTHGKWPVKWYAPECIN---YYKFSSKS--DVWSF--------------GVLMWEAFSYGQK---------------P  210 (277)
T ss_dssp             EC----CCCGGGCCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             ccccccCCCceecCchhhc---CCCCCchh--hhccc--------------hhhhhHHhhCCCC---------------C
Confidence            2234467899999999998   67889888  99999              999999765 443               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh---hcCccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN---LCQPIS  234 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~---l~hp~f  234 (454)
                      +.+.+.......+..+..+..|...             ++.+.+|+     .+||+.||++|||++|+   |+|+|+
T Consensus       211 f~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~~~~li-----~~cl~~dp~~RPs~~~i~~~L~~~~~  269 (277)
T d1xbba_         211 YRGMKGSEVTAMLEKGERMGCPAGC-------------PREMYDLM-----NLCWTYDVENRPGFAAVELRLRNYYY  269 (277)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSTTTSCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccc-------------CHHHHHHH-----HHHcCCCHhHCcCHHHHHHHhhCHHh
Confidence            5555555555555555555555543             26677888     99999999999999998   456654

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.5e-32  Score=265.11  Aligned_cols=161  Identities=19%  Similarity=0.240  Sum_probs=124.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccC--CCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCccc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYE--DHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYS   79 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~--~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (454)
                      ++++.+++||+.||+|||++||+||||||+|||++.+  ..+||+|||+++...                          
T Consensus       102 ~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~--------------------------  155 (321)
T d1tkia_         102 REIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLK--------------------------  155 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECC--------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccc--------------------------
Confidence            4689999999999999999999999999999999854  479999999997542                          


Q ss_pred             CCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCC
Q psy7309          80 HDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENG  159 (454)
Q Consensus        80 ~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~  159 (454)
                      .........||+.|+|||++.   +..|+.++  ||||+              ||++|+|++|.+               
T Consensus       156 ~~~~~~~~~~t~~y~ape~~~---~~~~~~~~--DiWSl--------------Gvily~ll~G~~---------------  201 (321)
T d1tkia_         156 PGDNFRLLFTAPEYYAPEVHQ---HDVVSTAT--DMWSL--------------GTLVYVLLSGIN---------------  201 (321)
T ss_dssp             TTCEEEEEESCGGGSCHHHHT---TCEECHHH--HHHHH--------------HHHHHHHHHSSC---------------
T ss_pred             cCCcccccccccccccchhcc---CCCCCchh--hcccH--------------HHHHHHHHhCCC---------------
Confidence            122344568999999999988   67899998  99999              999999876553               


Q ss_pred             CCCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccccC
Q psy7309         160 PSTGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISLEG  237 (454)
Q Consensus       160 p~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~~~  237 (454)
                      |+.+.+....+.++... ...++...    |     ...++++.+||     ++||+.||++|||++|+|+||||.+.
T Consensus       202 Pf~~~~~~~~~~~i~~~-~~~~~~~~----~-----~~~s~~~~~li-----~~~L~~dp~~R~s~~eil~hp~~~~~  264 (321)
T d1tkia_         202 PFLAETNQQIIENIMNA-EYTFDEEA----F-----KEISIEAMDFV-----DRLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             TTCCSSHHHHHHHHHHT-CCCCCHHH----H-----TTSCHHHHHHH-----HTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             CCCCCCHHHHHHHHHhC-CCCCChhh----c-----cCCCHHHHHHH-----HHHccCChhHCcCHHHHhcCHhhccC
Confidence            45554444444444432 22233221    1     11236778888     99999999999999999999999854

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.7e-31  Score=253.38  Aligned_cols=154  Identities=23%  Similarity=0.344  Sum_probs=111.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                        ...
T Consensus       101 ~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~------------------------~~~  156 (263)
T d1sm2a_         101 ETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLD------------------------DQY  156 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC----------------------------------
T ss_pred             HHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccC------------------------CCc
Confidence            45788999999999999999999999999999999999999999999986532                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++||+++ +.+               |
T Consensus       157 ~~~~~~~gt~~y~aPE~l~---~~~~~~k~--DVwS~--------------Gvil~el~t~~~~---------------~  202 (263)
T d1sm2a_         157 TSSTGTKFPVKWASPEVFS---FSRYSSKS--DVWSF--------------GVLMWEVFSEGKI---------------P  202 (263)
T ss_dssp             --------CTTSCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eeecceecCcccCChHHhc---CCCCCchh--hhcch--------------HHHHHHHHHCCCC---------------C
Confidence            2233467999999999998   67899988  99999              999999776 333               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +...+.......+........|...             +++..+++     .+||+.||++|||++|+++|
T Consensus       203 ~~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         203 YENRSNSEVVEDISTGFRLYKPRLA-------------STHVYQIM-----NHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             TCSCCHHHHHHHHHHTCCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCCCcccc-------------CHHHHHHH-----HHHccCCHhHCcCHHHHHHH
Confidence            3333444444444444444444332             26677888     99999999999999999875

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.9e-31  Score=257.39  Aligned_cols=161  Identities=17%  Similarity=0.145  Sum_probs=126.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+......                      ...
T Consensus       109 ~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~----------------------~~~  166 (285)
T d1u59a_         109 SNVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADD----------------------SYY  166 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCS----------------------CEE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccc----------------------ccc
Confidence            4688999999999999999999999999999999999999999999998653210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   ...|+.++  ||||+              ||++||+++ |++               |
T Consensus       167 ~~~~~~~gt~~y~aPE~~~---~~~~~~ks--DVwS~--------------Gv~l~E~lt~G~~---------------P  212 (285)
T d1u59a_         167 TARSAGKWPLKWYAPECIN---FRKFSSRS--DVWSY--------------GVTMWEALSYGQK---------------P  212 (285)
T ss_dssp             CCCCSSCCCGGGCCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             ccccccccCccccChHHHh---CCCCCccc--hhhcc--------------hHHHHHHHhCCCC---------------C
Confidence            2334567899999999998   67899998  99999              999999765 443               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh---hcCccccc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN---LCQPISLE  236 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~---l~hp~f~~  236 (454)
                      +.+....+....+..+..+..|+..             +++..+||     .+||+.||++|||+.++   |+|+|+..
T Consensus       213 f~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~~p~~RPs~~~i~~~L~~~~~~~  273 (285)
T d1u59a_         213 YKKMKGPEVMAFIEQGKRMECPPEC-------------PPELYALM-----SDCWIYKWEDRPDFLTVEQRMRACYYSL  273 (285)
T ss_dssp             TTTCCTHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHTTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCcC-------------CHHHHHHH-----HHHcCCCHhHCcCHHHHHHHHHHHHHHh
Confidence            5555555555566655555555543             26677888     99999999999999888   67888754

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=3.6e-31  Score=255.75  Aligned_cols=154  Identities=21%  Similarity=0.255  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+....                        ...
T Consensus       115 ~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~------------------------~~~  170 (287)
T d1opja_         115 VVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTG------------------------DTY  170 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCS------------------------SSS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCC------------------------CCc
Confidence            35788999999999999999999999999999999999999999999985432                        111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...+...||+.|+|||++.   +..|+.++  ||||+              ||++|||++++.              +++
T Consensus       171 ~~~~~~~g~~~y~aPE~~~---~~~~~~k~--DiwS~--------------Gv~l~ell~~~~--------------p~~  217 (287)
T d1opja_         171 TAHAGAKFPIKWTAPESLA---YNKFSIKS--DVWAF--------------GVLLWEIATYGM--------------SPY  217 (287)
T ss_dssp             EEETTEEECGGGCCHHHHH---HCCCSHHH--HHHHH--------------HHHHHHHHTTSC--------------CSS
T ss_pred             eeeccccccccccChHHHc---CCCCCchh--hhhhH--------------HHHHHHHHhCCC--------------CCC
Confidence            2234457899999999998   67899998  99999              999999776322              122


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.+.......+.....+.+|...             ++.+.+|+     .+||+.||++|||++|+++
T Consensus       218 ~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         218 PGIDLSQVYELLEKDYRMERPEGC-------------PEKVYELM-----RACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             TTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CcchHHHHHHHHhcCCCCCCCccc-------------hHHHHHHH-----HHHcCCCHhHCcCHHHHHH
Confidence            333333444444444444444432             26777888     9999999999999999865

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.5e-31  Score=255.43  Aligned_cols=157  Identities=22%  Similarity=0.237  Sum_probs=110.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.++++||+.||+|||++||+||||||+|||++.++.+||+|||+|+........                    ...
T Consensus       128 ~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~--------------------~~~  187 (299)
T d1jpaa_         128 IQLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSD--------------------PTY  187 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCCCCc--------------------cee
Confidence            467899999999999999999999999999999999999999999999865421100                    111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|||||++.   +..|+.++  ||||+              ||++|||++ |++               |
T Consensus       188 ~~~~~~~~t~~y~aPE~~~---~~~~~~~s--DvwS~--------------Gvvl~el~t~g~~---------------P  233 (299)
T d1jpaa_         188 TSALGGKIPIRWTAPEAIQ---YRKFTSAS--DVWSY--------------GIVMWEVMSYGER---------------P  233 (299)
T ss_dssp             --------CGGGSCHHHHH---SCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eecccccCCccccCHHHHh---cCCCCccc--ccccc--------------hHHHHHHHhCCCC---------------C
Confidence            2233457899999999988   67889888  99999              999999775 443               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.........+..+.....|...             ++.+.+++     .+||+.||++|||++|+++
T Consensus       234 f~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~~P~~RPs~~ei~~  285 (299)
T d1jpaa_         234 YWDMTNQDVINAIEQDYRLPPPMDC-------------PSALHQLM-----LDCWQKDRNHRPKFGQIVN  285 (299)
T ss_dssp             TTTCCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSTTTSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccc-------------hHHHHHHH-----HHHcCCCHhHCcCHHHHHH
Confidence            4455555555555544444444332             26677888     9999999999999998775

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.7e-31  Score=252.98  Aligned_cols=154  Identities=19%  Similarity=0.242  Sum_probs=113.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.++.||+.||+|||++||+||||||+||+++.++.+||+|||+|+....                        ...
T Consensus       108 ~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~------------------------~~~  163 (273)
T d1mp8a_         108 ASLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMED------------------------STY  163 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC------------------------------------
T ss_pred             HHHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccC------------------------Ccc
Confidence            46889999999999999999999999999999999999999999999986532                        112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+...||+.|+|||++.   +..|+.++  ||||+              ||++|||++ |.+               |
T Consensus       164 ~~~~~~~gt~~y~apE~l~---~~~~~~~~--DiwSl--------------Gvil~e~lt~g~~---------------P  209 (273)
T d1mp8a_         164 YKASKGKLPIKWMAPESIN---FRRFTSAS--DVWMF--------------GVCMWEILMHGVK---------------P  209 (273)
T ss_dssp             -------CCGGGCCHHHHH---HCCCSHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eeccceecCcccchhhHhc---cCCCCCcc--ccccc--------------hHHHHHHHhcCCC---------------C
Confidence            2334567899999999998   67899988  99999              999999765 433               5


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.+......++.......+|...             ++.+.+||     .+||+.||++|||++|+++|
T Consensus       210 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~li-----~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         210 FQGVKNNDVIGRIENGERLPMPPNC-------------PPTLYSLM-----TKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             TTTCCGGGHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCCCC-------------CHHHHHHH-----HHHcCCCHhHCcCHHHHHHH
Confidence            5555555666666655555555442             26778888     99999999999999988864

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9.7e-31  Score=252.18  Aligned_cols=156  Identities=19%  Similarity=0.216  Sum_probs=112.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++.+++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+......                      ...
T Consensus       110 ~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~----------------------~~~  167 (283)
T d1mqba_         110 LQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDP----------------------EAT  167 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------------------------------
T ss_pred             HHHHHHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCCC----------------------ccc
Confidence            4678999999999999999999999999999999999999999999998653210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|||||++.   +..|+.++  ||||+              ||++|||++++.              +|+
T Consensus       168 ~~~~~~~gt~~Y~APE~l~---~~~~~~~s--DI~S~--------------Gvil~el~t~~~--------------~~~  214 (283)
T d1mqba_         168 YTTSGGKIPIRWTAPEAIS---YRKFTSAS--DVWSF--------------GIVMWEVMTYGE--------------RPY  214 (283)
T ss_dssp             ------CCCGGGSCHHHHH---SCCCCHHH--HHHHH--------------HHHHHHHHTTSC--------------CTT
T ss_pred             eEeccCCCCccccCHHHHc---cCCCCCcc--ccccc--------------HHHHHHHHhCCC--------------Ccc
Confidence            2233457899999999998   67899988  99999              999999765321              123


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      ...+....+..+........|...             ++...+++     .+||+.||++|||+.|+++
T Consensus       215 ~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         215 WELSNHEVMKAINDGFRLPTPMDC-------------PSAIYQLM-----MQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             TTCCHHHHHHHHHTTCCCCCCTTC-------------BHHHHHHH-----HHHTCSSTTTSCCHHHHHH
T ss_pred             ccCCHHHHHHHHhccCCCCCchhh-------------HHHHHHHH-----HHHCcCCHhHCcCHHHHHH
Confidence            333344444444444444444432             25667788     9999999999999998875

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.1e-31  Score=257.68  Aligned_cols=156  Identities=19%  Similarity=0.237  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++|||||||||+|||++.++++||+|||+|+.....                       ...
T Consensus       111 ~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~-----------------------~~~  167 (317)
T d1xkka_         111 QYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAE-----------------------EKE  167 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTT-----------------------CC-
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccc-----------------------ccc
Confidence            357899999999999999999999999999999999999999999999865321                       111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++|||++ |.+               |
T Consensus       168 ~~~~~~~gt~~y~APE~l~---~~~~~~~s--DvwS~--------------Gvil~el~t~g~~---------------p  213 (317)
T d1xkka_         168 YHAEGGKVPIKWMALESIL---HRIYTHQS--DVWSY--------------GVTVWELMTFGSK---------------P  213 (317)
T ss_dssp             -------CCTTTSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             ccccccccCccccChHHHh---cCCCChhh--hhhhH--------------HHHHHHHHHCCCC---------------C
Confidence            2233457899999999998   67899888  99999              999999876 332               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQP  232 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp  232 (454)
                      +.+.+.......+..+.....|...             ++...+++     .+||+.||++|||+.|++.|.
T Consensus       214 ~~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~~~~li-----~~cl~~dP~~RPs~~eil~~l  267 (317)
T d1xkka_         214 YDGIPASEISSILEKGERLPQPPIC-------------TIDVYMIM-----VKCWMIDADSRPKFRELIIEF  267 (317)
T ss_dssp             TTTSCGGGHHHHHHHTCCCCCCTTB-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccc-------------CHHHHHHH-----HHhCCCChhhCcCHHHHHHHH
Confidence            4444444555555545545445442             26677888     999999999999999999874

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-30  Score=259.55  Aligned_cols=187  Identities=27%  Similarity=0.358  Sum_probs=118.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.+++||+.||+|||++||+||||||+|||++.++.+|++|||+++....                          .
T Consensus       119 ~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~--------------------------~  172 (355)
T d2b1pa1         119 ERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGT--------------------------S  172 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhcccc--------------------------c
Confidence            47899999999999999999999999999999999999999999999885421                          2


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ...+..+||+.|+|||++.   +..|+.++  ||||+              ||+++||+.|++.     ....+...+..
T Consensus       173 ~~~~~~~~t~~y~aPE~l~---~~~~~~~~--DiwSl--------------G~~l~ell~g~~pF~~~~~~~~~~~i~~~  233 (355)
T d2b1pa1         173 FMMTPYVVTRYYRAPEVIL---GMGYKENV--DIWSV--------------GCIMGEMVRHKILFPGRDYIDQWNKVIEQ  233 (355)
T ss_dssp             --------CCTTCCHHHHT---TCCCCTTH--HHHHH--------------HHHHHHHHHSSCSSCCSSHHHHHHHHHHH
T ss_pred             cccccccccccccChhhhc---CCCCCCCc--ccccc--------------cchHHHHhhCCCCCCCCCHHHHHHHHHHh
Confidence            3445668999999999998   67889888  99999              9999997766652     22233333333


Q ss_pred             cCCCCCCch--hhhhhhhhccC----CCCCCCccccc--cccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhh
Q psy7309         157 ENGPSTGSN--VQKSLQKFQKS----PPSVYREWRSS--FEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQN  228 (454)
Q Consensus       157 ~~~p~~~~~--~~~~~~~~~~~----~~~~~p~~~~~--~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~  228 (454)
                      ..+|.....  .......+...    .....+.....  ...........++.+.+||     ++||..||++||||+|+
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dll-----~~mL~~dP~~R~ta~el  308 (355)
T d2b1pa1         234 LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLL-----SKMLVIDPAKRISVDDA  308 (355)
T ss_dssp             HCCCCHHHHTTSCHHHHHHHHTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHH-----HHHSCSSTTTSCCHHHH
T ss_pred             ccCCCHHHHHHhhhhHHHHhhcCccccccccccccccccccccccccccCCHHHHHHH-----HHHCcCChhHCcCHHHH
Confidence            333322100  11111111111    11111111000  0000001112235566777     99999999999999999


Q ss_pred             hcCcccccCC
Q psy7309         229 LCQPISLEGS  238 (454)
Q Consensus       229 l~hp~f~~~~  238 (454)
                      |+||||++..
T Consensus       309 L~Hpw~~~~~  318 (355)
T d2b1pa1         309 LQHPYINVWY  318 (355)
T ss_dssp             HTSTTTGGGC
T ss_pred             hcCcccCCCC
Confidence            9999999754

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-30  Score=247.99  Aligned_cols=154  Identities=19%  Similarity=0.309  Sum_probs=123.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.|++.||+|||++||+||||||+|||++.++.+||+|||+|+....                        ...
T Consensus       100 ~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~------------------------~~~  155 (258)
T d1k2pa_         100 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLD------------------------DEY  155 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSS------------------------SSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccC------------------------CCc
Confidence            46789999999999999999999999999999999999999999999975432                        122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++|||++ |+.               |
T Consensus       156 ~~~~~~~~t~~y~aPE~~~---~~~~~~ks--DiwS~--------------G~~l~el~t~g~~---------------P  201 (258)
T d1k2pa_         156 TSSVGSKFPVRWSPPEVLM---YSKFSSKS--DIWAF--------------GVLMWEIYSLGKM---------------P  201 (258)
T ss_dssp             CCCCCSCCCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eeecccCCCCCcCCcHHhc---CCCCCcce--eeccc--------------chhhHhHHhcCCC---------------C
Confidence            2344568999999999998   67889888  99999              999999765 442               5


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      +.+.+..+...++........|...             ++...+||     ++||+.||++|||++|+++|
T Consensus       202 f~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         202 YERFTNSETAEHIAQGLRLYRPHLA-------------SEKVYTIM-----YSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             TTTSCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHTTCSSGGGSCCHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhCCCCCCcccc-------------cHHHHHHH-----HHHccCCHhHCcCHHHHHHH
Confidence            5555555555666555444444432             26677888     99999999999999999986

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.5e-30  Score=257.74  Aligned_cols=181  Identities=29%  Similarity=0.360  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .+++.+++||+.||+|||++||+||||||+|||++.++.+|++|||+|....                            
T Consensus       121 ~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~----------------------------  172 (348)
T d2gfsa1         121 DHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTD----------------------------  172 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCT----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccC----------------------------
Confidence            4689999999999999999999999999999999999999999999987432                            


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh-----hHHHHHHHhhh
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK-----TLEELKHNIRR  156 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~-----~~~~l~~~i~~  156 (454)
                      ....+..||+.|+|||++..  ...++.++  ||||+              ||++|+|++|++.     .......+...
T Consensus       173 ~~~~~~~g~~~y~apE~~~~--~~~~~~~~--DiwSl--------------Gv~l~~ll~g~~pF~~~~~~~~~~~i~~~  234 (348)
T d2gfsa1         173 DEMTGYVATRWYRAPEIMLN--WMHYNQTV--DIWSV--------------GCIMAELLTGRTLFPGTDHIDQLKLILRL  234 (348)
T ss_dssp             GGGSSSCHHHHTSCHHHHTT--CSCCCTTH--HHHHH--------------HHHHHHHHHSSCSCCCSSHHHHHHHHHHH
T ss_pred             cccccccccccccCchhhcC--CccCCccc--chhhh--------------hHHHHHHHhCCCCCCCCCHHHHHHHHHHh
Confidence            23345689999999999762  34567788  99999              9999997766542     11222222222


Q ss_pred             cCCCCCCch---hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcc
Q psy7309         157 ENGPSTGSN---VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPI  233 (454)
Q Consensus       157 ~~~p~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~  233 (454)
                      ...+.....   .......+. ......+.    ..|+... ...++.+.+||     ++||+.||++||||+|+|+|||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~-~~~s~~~~dli-----~~mL~~dP~~R~ta~elL~Hp~  303 (348)
T d2gfsa1         235 VGTPGAELLKKISSESARNYI-QSLTQMPK----MNFANVF-IGANPLAVDLL-----EKMLVLDSDKRITAAQALAHAY  303 (348)
T ss_dssp             HCCCCHHHHTTCCCHHHHHHH-TTSCCCCC----CCHHHHS-TTCCHHHHHHH-----HHHSCSSGGGSCCHHHHHTSGG
T ss_pred             cCCCChHHhhhccchhhhhhh-hhcccCCC----cchhhhc-CCCCHHHHHHH-----HHHCcCChhhCcCHHHHhcCHh
Confidence            222211000   000000000 00011111    1122211 12346778888     9999999999999999999999


Q ss_pred             cccCCC
Q psy7309         234 SLEGSS  239 (454)
Q Consensus       234 f~~~~~  239 (454)
                      |.+...
T Consensus       304 f~~~~~  309 (348)
T d2gfsa1         304 FAQYHD  309 (348)
T ss_dssp             GTTTCC
T ss_pred             hCCCCC
Confidence            997654

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.4e-30  Score=251.22  Aligned_cols=160  Identities=22%  Similarity=0.285  Sum_probs=119.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      .++++++.||+.||+|||++||+||||||+|||++.++++||+|||+|+....                        ...
T Consensus       113 ~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~------------------------~~~  168 (285)
T d1fmka3         113 PQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIED------------------------NEY  168 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC-------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccC------------------------CCc
Confidence            47889999999999999999999999999999999999999999999986532                        112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCC-chhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKD-RPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~-~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   ...++.++  ||||+              ||++|||+++ ++               |
T Consensus       169 ~~~~~~~gt~~y~aPE~~~---~~~~~~ks--DI~S~--------------Giil~el~t~~~p---------------~  214 (285)
T d1fmka3         169 TARQGAKFPIKWTAPEAAL---YGRFTIKS--DVWSF--------------GILLTELTTKGRV---------------P  214 (285)
T ss_dssp             -------CCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             eeeccccccccccChHHHh---CCCCCcHH--hhhcc--------------hHHHHHHHhCCCC---------------C
Confidence            2344568999999999998   67888888  99999              9999997653 32               3


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc--CcccccC
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC--QPISLEG  237 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~--hp~f~~~  237 (454)
                      +........+..+........+...             ++.+.++|     .+||+.||++|||++++++  |+||...
T Consensus       215 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~l~~li-----~~cl~~dP~~Rps~~~i~~~L~~~~~~~  275 (285)
T d1fmka3         215 YPGMVNREVLDQVERGYRMPCPPEC-------------PESLHDLM-----CQCWRKEPEERPTFEYLQAFLEDYFTST  275 (285)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCTTS-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             CCCCCHHHHHHHHHhcCCCCCCccc-------------CHHHHHHH-----HHHcccCHhHCcCHHHHHHHHhhhhcCC
Confidence            3333444444444444444444432             26677888     9999999999999999987  8888754

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-30  Score=256.67  Aligned_cols=174  Identities=24%  Similarity=0.320  Sum_probs=124.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++.+++||+.||+|||++||+||||||+|||++.++.+||+|||+|+.+..                        ...
T Consensus       129 ~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~------------------------~~~  184 (322)
T d1vzoa_         129 HEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVA------------------------DET  184 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCG------------------------GGG
T ss_pred             HHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcc------------------------ccc
Confidence            35788999999999999999999999999999999999999999999975432                        112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||++.. ....|+.++  ||||+              ||++|||++|..               |+
T Consensus       185 ~~~~~~~g~~~~~~pe~~~~-~~~~~~~ks--DIWSl--------------G~iLyelltG~~---------------PF  232 (322)
T d1vzoa_         185 ERAYDFCGTIEYMAPDIVRG-GDSGHDKAV--DWWSL--------------GVLMYELLTGAS---------------PF  232 (322)
T ss_dssp             GGGCGGGSCCTTCCHHHHTT-CC---CTHH--HHHHH--------------HHHHHHHHHSSC---------------TT
T ss_pred             ccccccccccccchhHHhhc-CCcCCCchh--hhHHH--------------HHHHHHHHhCCC---------------CC
Confidence            22345689999999999872 133466677  99999              999999776553               22


Q ss_pred             CCch----hhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCC-----ChhhhhcCc
Q psy7309         162 TGSN----VQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRP-----SSEQNLCQP  232 (454)
Q Consensus       162 ~~~~----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rp-----ta~e~l~hp  232 (454)
                      .+..    ......... .....+|..             .++.+.+||     ++||+.||++||     ||+|+++||
T Consensus       233 ~~~~~~~~~~~i~~~~~-~~~~~~~~~-------------~s~~~~~li-----~~~l~~dP~~R~s~~~~t~~eil~Hp  293 (322)
T d1vzoa_         233 TVDGEKNSQAEISRRIL-KSEPPYPQE-------------MSALAKDLI-----QRLLMKDPKKRLGCGPRDADEIKEHL  293 (322)
T ss_dssp             SCTTSCCCHHHHHHHHH-HCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSTTSSTTTHHHHHTSG
T ss_pred             CCCCHHHHHHHHHHhcc-cCCCCCccc-------------CCHHHHHHH-----HHHcccCHHHcCCCCcccHHHHHcCH
Confidence            2221    111111111 222333333             237778888     999999999999     589999999


Q ss_pred             ccccCCCCCCCccCccccccCCCCCC
Q psy7309         233 ISLEGSSSGLSVLGSEQLLTCDHIPP  258 (454)
Q Consensus       233 ~f~~~~~~~~~~~~~~~ll~~~~~~~  258 (454)
                      ||+.        ++|+++......+|
T Consensus       294 ff~~--------i~~~~l~~~~~~~p  311 (322)
T d1vzoa_         294 FFQK--------INWDDLAAKKVPAP  311 (322)
T ss_dssp             GGTT--------CCHHHHHTTCSCCS
T ss_pred             hhcC--------CCHHHHHhCCCCcC
Confidence            9974        45556665444433

>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.96  E-value=1.7e-29  Score=248.10  Aligned_cols=153  Identities=11%  Similarity=0.132  Sum_probs=131.4

Q ss_pred             CCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCCCCeEe
Q psy7309         293 KVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRGGSIVT  364 (454)
Q Consensus       293 ~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~G~~~~  364 (454)
                      -+.++.|++       |.+...+++|++++.++|++|||.+|+||+||+++++..+        .+++|++.|++|+.++
T Consensus         4 lP~G~rD~l-------p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~~~~~~   76 (325)
T d1qe0a2           4 IPRGTQDIL-------PEDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSIT   76 (325)
T ss_dssp             CCTTCCCBC-------HHHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEE
T ss_pred             CCCCCcCCC-------HHHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhcccccccc
Confidence            345678888       7778889999999999999999999999999999987542        2579999999999999


Q ss_pred             eCCCCCHHHHHHHHHcCC----CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCC
Q psy7309         365 LPHDLRIPFARYLAQNGS----IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFN  440 (454)
Q Consensus       365 Lr~d~T~p~aR~~a~~~~----~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~  440 (454)
                      ||||+|+|++|.++.+..    ..|+|+||+|+|||+++++.|++|||+|||+||||.+ +..+|+|++.+++++++.+|
T Consensus        77 lr~d~t~~~~r~~~~~~~~~~~~~p~R~~Y~g~VfR~~~~~~~~~rE~~Q~G~EiiG~~-~~~ad~Eii~l~~~~l~~~g  155 (325)
T d1qe0a2          77 LRPEGTAAVVRSYIEHKMQGNPNQPIKLYYNGPMFRYERKQKGRYRQFNQFGVEAIGAE-NPSVDAEVLAMVMHIYQSFG  155 (325)
T ss_dssp             ECSCSHHHHHHHHHHTTGGGCSSCSEEEEEEEEEECC-------CCEEEEEEEEEESCC-CHHHHHHHHHHHHHHHHHTT
T ss_pred             ccccccccHHHHHHhhccccccccchhhheecceeeeccccCCccceeeecceeecCCc-CcHHHHHHHHHHHHHHHhhC
Confidence            999999999998775431    4789999999999999999999999999999999998 99999999999999999999


Q ss_pred             CCCcEEEcCcccc
Q psy7309         441 YGNISFAPHPRVL  453 (454)
Q Consensus       441 ~~~~~i~i~~~~~  453 (454)
                      ++++.+.|||+++
T Consensus       156 ~~~~~i~i~~~~~  168 (325)
T d1qe0a2         156 LKHLKLVINSVGD  168 (325)
T ss_dssp             CCCEEEEEEECCC
T ss_pred             CcCcceeeccccc
Confidence            9999999999875

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.3e-30  Score=250.59  Aligned_cols=155  Identities=19%  Similarity=0.231  Sum_probs=121.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+.++++||+.||+|||++|||||||||+|||++.++.+||+|||+|+.....                       ...
T Consensus       140 ~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~-----------------------~~~  196 (301)
T d1lufa_         140 AEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSA-----------------------DYY  196 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGG-----------------------GCB
T ss_pred             HHHHHHHHHHHHHhhhcccCCeEeeEEcccceEECCCCcEEEccchhheeccCC-----------------------ccc
Confidence            368899999999999999999999999999999999999999999999865431                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ...+...||+.|+|||++.   +..|+.++  ||||+              ||++|||+++.              ..|+
T Consensus       197 ~~~~~~~~~~~y~aPE~~~---~~~~t~ks--DVwS~--------------Gvvl~ell~~~--------------~~p~  243 (301)
T d1lufa_         197 KADGNDAIPIRWMPPESIF---YNRYTTES--DVWAY--------------GVVLWEIFSYG--------------LQPY  243 (301)
T ss_dssp             C----CCBCGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTT--------------CCTT
T ss_pred             cccCCCCcCcCcCCHHHHc---cCCCChhh--hhccc--------------hhhHHHHHccC--------------CCCC
Confidence            2344578999999999998   77899888  99999              99999976542              1345


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      .+.+..+....+.....+..|...             +++..++|     .+||+.||++|||+.|+++
T Consensus       244 ~~~~~~e~~~~v~~~~~~~~p~~~-------------~~~~~~li-----~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         244 YGMAHEEVIYYVRDGNILACPENC-------------PLELYNLM-----RLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             TTSCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCCCCCccc-------------hHHHHHHH-----HHHcCCChhHCcCHHHHHH
Confidence            555555566666555544444442             26677888     9999999999999998864

>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Histidyl-tRNA synthetase (HisRS)
species: Escherichia coli [TaxId: 562]

Probab=99.95  E-value=7.5e-29  Score=243.22  Aligned_cols=150  Identities=13%  Similarity=0.126  Sum_probs=135.4

Q ss_pred             CCCCCccccccccccCCchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc--------ccccEEEEcCCCCeE
Q psy7309         292 QKVSPADDITYDISLSRSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT--------SETTASVMTRGGSIV  363 (454)
Q Consensus       292 q~~~~~~d~~yD~~~~~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~--------~~~~~~~~d~~G~~~  363 (454)
                      |+..+++|++       |.+...+++|+++|+++|++|||.+|.||+||+++++...        .+.++.+.|.+|+.+
T Consensus         3 ~~~~G~~D~l-------p~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g~~l   75 (322)
T d1kmma2           3 QAIRGMNDYL-------PGETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSL   75 (322)
T ss_dssp             CCCTTCCCBC-------HHHHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTSCEE
T ss_pred             CCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcccccc
Confidence            5667788888       8888899999999999999999999999999999987532        257899999999999


Q ss_pred             eeCCCCCHHHHHHHHHcCC--CCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCC
Q psy7309         364 TLPHDLRIPFARYLAQNGS--IVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNY  441 (454)
Q Consensus       364 ~Lr~d~T~p~aR~~a~~~~--~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~  441 (454)
                      +||||+|+|+||.++.+..  ..|.|+||+|+|||+++++.|++|||+|||+||||.+ +..+|+|++.++.++|+.+|+
T Consensus        76 ~Lr~D~T~~iaR~~~~~~~~~~~p~r~~y~g~v~r~~~~~~gr~re~~Q~g~EiiG~~-~~~ad~Eii~l~~~~l~~lgl  154 (322)
T d1kmma2          76 TLRPEGTAGCVRAGIEHGLLYNQEQRLWYIGPMFRHERPQKGRYRQFHQLGCEVFGLQ-GPDIDAELIMLTARWWRALGI  154 (322)
T ss_dssp             EECSCSHHHHHHHHHHTTCSTTCCEEEEEEEEEECCCCCBTTBCSEEEEEEEEEESCC-SHHHHHHHHHHHHHHHHHHTC
T ss_pred             cccccccchhhHHHHhhhhhhhhhhhHhhcccccccCCCCCCccchhhhhhHHHhccc-cchhHHHHHHHHHHHHHhcCC
Confidence            9999999999999987543  6899999999999999999999999999999999988 999999999999999999999


Q ss_pred             CCcEEEcC
Q psy7309         442 GNISFAPH  449 (454)
Q Consensus       442 ~~~~i~i~  449 (454)
                      .++.+.++
T Consensus       155 ~~~~~~~~  162 (322)
T d1kmma2         155 SEHVTLEL  162 (322)
T ss_dssp             GGGCEEEE
T ss_pred             CceeEEec
Confidence            77655443

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.4e-29  Score=245.80  Aligned_cols=154  Identities=23%  Similarity=0.309  Sum_probs=123.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++++++||+.||+|||++|||||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       135 ~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~-----------------------~~~  191 (299)
T d1fgka_         135 KDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHI-----------------------DYY  191 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGC-----------------------CTT
T ss_pred             HHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCCCCeEeccchhhcccccc-----------------------ccc
Confidence            468899999999999999999999999999999999999999999999865431                       122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||+.|+|||++.   +..|+.++  ||||+              ||++|||++ |++               |
T Consensus       192 ~~~~~~~~~~~y~aPE~l~---~~~y~~k~--DiwS~--------------Gvvl~ell~~g~~---------------p  237 (299)
T d1fgka_         192 KKTTNGRLPVKWMAPEALF---DRIYTHQS--DVWSF--------------GVLLWEIFTLGGS---------------P  237 (299)
T ss_dssp             CCCTTSCCGGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             cccccCCCChhhhhhhHhc---CCCCCchh--hhHHh--------------HHHHHHhccCCCC---------------C
Confidence            3345678999999999998   67899999  99999              999999765 343               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +.+.+.......+.....+..|...             ++.+.+||     .+||+.||++|||+.|+++
T Consensus       238 ~~~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         238 YPGVPVEELFKLLKEGHRMDKPSNC-------------TNELYMMM-----RDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             STTCCHHHHHHHHHTTCCCCCCSSC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccc-------------hHHHHHHH-----HHHccCCHhHCcCHHHHHH
Confidence            4445555555555555555555443             26677888     9999999999999998876

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.95  E-value=5.6e-30  Score=245.89  Aligned_cols=163  Identities=26%  Similarity=0.367  Sum_probs=111.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ++++.+++||+.||+|||++||+||||||+|||++.++.++|+|||.+.......                      ...
T Consensus       111 ~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~----------------------~~~  168 (277)
T d1o6ya_         111 KRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSG----------------------NSV  168 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhcccc----------------------ccc
Confidence            4689999999999999999999999999999999999999999999887442110                      122


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      ......+||+.|||||++.   +..|+.++  ||||+              ||++|||++|++               |+
T Consensus       169 ~~~~~~~Gt~~Y~aPE~~~---~~~~~~~~--DiwSl--------------GvilyelltG~~---------------Pf  214 (277)
T d1o6ya_         169 TQTAAVIGTAQYLSPEQAR---GDSVDARS--DVYSL--------------GCVLYEVLTGEP---------------PF  214 (277)
T ss_dssp             ----------TTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC---------------SC
T ss_pred             cccccccCcccccCHHHHc---CCCCCcce--ecccc--------------hHHHHHHHhCCC---------------CC
Confidence            3455678999999999998   67889888  99999              999999877654               44


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcCcccc
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQPISL  235 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~hp~f~  235 (454)
                      .+.+..+.+.+....... .+...    +     ...++.+.++|     .+||+.||++||+..+.+.|+|.+
T Consensus       215 ~~~~~~~~~~~~~~~~~~-~~~~~----~-----~~~s~~l~~li-----~~~L~~dp~~R~~sa~~l~~~l~r  273 (277)
T d1o6ya_         215 TGDSPVSVAYQHVREDPI-PPSAR----H-----EGLSADLDAVV-----LKALAKNPENRYQTAAEMRADLVR  273 (277)
T ss_dssp             CCSSHHHHHHHHHHCCCC-CGGGT----S-----SSCCHHHHHHH-----HHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHhcCCC-CCchh----c-----cCCCHHHHHHH-----HHHccCCHhHCHhHHHHHHHHHHH
Confidence            444443333333322222 11111    0     12336778888     999999999999555555566653

>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: ATP phosphoribosyltransferase regulatory subunit HisZ
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=9.8e-29  Score=236.89  Aligned_cols=129  Identities=13%  Similarity=0.113  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeEeecCc
Q psy7309         315 LESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYCIDRV  394 (454)
Q Consensus       315 ~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~y~g~v  394 (454)
                      .+++.+ +.+++++|||.+|.||+||+.+....   .  .|.|++|+.++||||+|+|+||+++++....|.|+||+|+|
T Consensus         6 ~ek~~s-f~~~~~~~Gy~~i~tP~~E~~e~~~~---~--~F~D~~g~~l~LRpD~T~~iaR~~~~~~~~~p~k~~Y~g~V   79 (275)
T d1usya_           6 FEKVFS-FYSKATKKGFSPFFVPALEKAEEPAG---N--FFLDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFV   79 (275)
T ss_dssp             HHHHHH-HHHHHHHTTCEECCCCSEEECSSCCS---S--CEEETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEE
T ss_pred             HHHHHH-HHHHHHHcCCceeecCcccccccccc---c--eeEcCCCCEEEECCCCcHHHHHHHHHcCCCCCeeeeEEeeE
Confidence            466666 66788899999999999999986542   2  37899999999999999999999987654679999999999


Q ss_pred             cccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEcCcccc
Q psy7309         395 FRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAPHPRVL  453 (454)
Q Consensus       395 fR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~~~  453 (454)
                      ||+++   +++|||+|+|+|+||.+ +..+|+|+|.+++++|+.+|+++++|+|||+++
T Consensus        80 fR~~~---~~~re~~Q~G~EiiG~~-~~~aD~Evi~l~~~~l~~lgi~~~~i~l~~~~i  134 (275)
T d1usya_          80 YRYSG---SDLVAEYQLGLEKVPRN-SLDDSLEVLEIIVESASEFFEGPVIVEIGHTGV  134 (275)
T ss_dssp             EEEET---TEEEEEEEEEEEEESCC-SHHHHHHHHHHHHHHHHHHCCSCEEEEEEETTH
T ss_pred             EEeCC---CcccceeecCceeechh-hHHHHHHHHHHHHHHHHhhcccccEEEecCcch
Confidence            99864   45899999999999987 999999999999999999999999999999874

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4.2e-29  Score=248.23  Aligned_cols=186  Identities=19%  Similarity=0.176  Sum_probs=119.9

Q ss_pred             hhHHHHHHHHHHHHHHHHH-cCCcccCCCCCcEEEccCCC------eEEecccchhhhhhhcCCCccccccCccCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHS-QGIIHRDLKPVNIFIDYEDH------VKIGDFGLATNILQKHAGPLARELTGYILPPIDS   74 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~-~giiHrDLKp~NILl~~~~~------vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~   74 (454)
                      ..++.+++||+.||+|||+ +||+||||||+|||++.++.      +||+|||.|....                     
T Consensus       125 ~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~---------------------  183 (362)
T d1q8ya_         125 IYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYD---------------------  183 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETT---------------------
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccc---------------------
Confidence            4689999999999999998 89999999999999987654      9999999987432                     


Q ss_pred             CCcccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchh---------
Q psy7309          75 TAFYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPK---------  145 (454)
Q Consensus        75 ~~~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~---------  145 (454)
                             ......+||+.|+|||++.   ...|+.++  ||||+              ||++++|++|+..         
T Consensus       184 -------~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~il~el~~g~~pF~~~~~~~~  237 (362)
T d1q8ya_         184 -------EHYTNSIQTREYRSPEVLL---GAPWGCGA--DIWST--------------ACLIFELITGDFLFEPDEGHSY  237 (362)
T ss_dssp             -------BCCCSCCSCGGGCCHHHHH---TCCCCTHH--HHHHH--------------HHHHHHHHHSSCCC--------
T ss_pred             -------cccccccccccccChhhcc---ccCCCccc--cccch--------------HHHHHHHHHCCCCCCCCccccc
Confidence                   1234568999999999988   67889888  99999              8888886655432         


Q ss_pred             --hHHHHHHHhhhcCCCCCCchhhhh--hhhhc-cCCCCCCCcccccccccccc------ccccccchhHHHHHHHHhhh
Q psy7309         146 --TLEELKHNIRRENGPSTGSNVQKS--LQKFQ-KSPPSVYREWRSSFEWSTVR------NNIKSNFQHFLILIHQQKWC  214 (454)
Q Consensus       146 --~~~~l~~~i~~~~~p~~~~~~~~~--~~~~~-~~~~~~~p~~~~~~~~~~~~------~~~~~~~~~~li~~~~~~~~  214 (454)
                        ..+.+...+...+.+. .......  ...+. ...............+....      ....++.+.+||     .+|
T Consensus       238 ~~~~~~~~~~~~~lg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll-----~~m  311 (362)
T d1q8ya_         238 TKDDDHIAQIIELLGELP-SYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFL-----SPM  311 (362)
T ss_dssp             -CHHHHHHHHHHHHCSCC-HHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHH-----GGG
T ss_pred             cchhHHHHHHHHHhCCCC-HHHhhcccccccccccchhhhccccccCCchhhhcccccccCcccCHHHHHHH-----HHH
Confidence              1122222222222221 1111000  00000 00000000000000111100      012235666777     999


Q ss_pred             cCCCCCCCCChhhhhcCcccccCCCC
Q psy7309         215 LNHDPSKRPSSEQNLCQPISLEGSSS  240 (454)
Q Consensus       215 L~~dP~~Rpta~e~l~hp~f~~~~~~  240 (454)
                      |++||.+||||+|+|+||||++....
T Consensus       312 L~~dP~~Rpta~e~L~Hp~f~~~~~~  337 (362)
T d1q8ya_         312 LQLDPRKRADAGGLVNHPWLKDTLGM  337 (362)
T ss_dssp             GCSSTTTCBCHHHHHTCGGGTTCTTC
T ss_pred             CCCChhHCcCHHHHhcCcccCCCCCc
Confidence            99999999999999999999955443

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.5e-29  Score=244.14  Aligned_cols=160  Identities=20%  Similarity=0.311  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+.+++.|++.||+|||+++|+||||||+|||++.++++||+|||+|+.....                       ....
T Consensus       134 ~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~-----------------------~~~~  190 (308)
T d1p4oa_         134 KMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYET-----------------------DYYR  190 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGG-----------------------GCEE
T ss_pred             HHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeecccceeccCC-----------------------ccee
Confidence            57889999999999999999999999999999999999999999999865431                       1112


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......||+.|+|||.+.   +..|+.++  ||||+              ||++|||+++.              ..|+.
T Consensus       191 ~~~~~~~t~~y~aPe~l~---~~~~~~~~--Dv~S~--------------G~il~El~t~~--------------~~p~~  237 (308)
T d1p4oa_         191 KGGKGLLPVRWMSPESLK---DGVFTTYS--DVWSF--------------GVVLWEIATLA--------------EQPYQ  237 (308)
T ss_dssp             GGGSSEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHHTS--------------CCTTT
T ss_pred             eccceecccccCCHHHHc---cCCCCccc--ccccH--------------HHHHHHHHhCC--------------CCCCC
Confidence            234458999999999998   77888888  99999              99999976532              23555


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc------Cccccc
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC------QPISLE  236 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~------hp~f~~  236 (454)
                      +.+....+..+.+......|...             ++.+.++|     .+||+.||++|||++|+++      +|+|.+
T Consensus       238 ~~~~~~~~~~i~~~~~~~~p~~~-------------~~~l~~li-----~~cl~~~P~~RPs~~~il~~L~~~~~~~~~~  299 (308)
T d1p4oa_         238 GLSNEQVLRFVMEGGLLDKPDNC-------------PDMLFELM-----RMCWQYNPKMRPSFLEIISSIKEEMEPGFRE  299 (308)
T ss_dssp             TSCHHHHHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             CCCHHHHHHHHHhCCCCCCcccc-------------hHHHHHHH-----HHHcCCChhHCcCHHHHHHHHHHhcCCCCcC
Confidence            66666666666655554444442             26677888     9999999999999999987      666653

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.2e-29  Score=244.49  Aligned_cols=153  Identities=22%  Similarity=0.231  Sum_probs=120.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..++++++||+.||.|||++||+||||||+|||++.++.+||+|||+|+....                          .
T Consensus       127 ~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~--------------------------~  180 (309)
T d1fvra_         127 QQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEV--------------------------Y  180 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCE--------------------------E
T ss_pred             HHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEEccccccccccc--------------------------c
Confidence            35789999999999999999999999999999999999999999999975421                          1


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPS  161 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~  161 (454)
                      .......||+.|+|||.+.   +..|+.++  ||||+              ||++|||+++.              ..|+
T Consensus       181 ~~~~~~~gt~~y~aPE~l~---~~~~~~~s--DvwSf--------------Gvil~ell~~~--------------~~p~  227 (309)
T d1fvra_         181 VKKTMGRLPVRWMAIESLN---YSVYTTNS--DVWSY--------------GVLLWEIVSLG--------------GTPY  227 (309)
T ss_dssp             CCC----CCTTTCCHHHHH---HCEECHHH--HHHHH--------------HHHHHHHHTTS--------------CCTT
T ss_pred             ccccceecCCcccchHHhc---cCCCCccc--eeehh--------------HHHHHHHHhcC--------------CCCC
Confidence            2223457899999999998   67899888  99999              99999976532              1245


Q ss_pred             CCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         162 TGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      .+.+..+....+..+..+..|...             ++++.+||     .+||+.||++|||++|+++|
T Consensus       228 ~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~li-----~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         228 CGMTCAELYEKLPQGYRLEKPLNC-------------DDEVYDLM-----RQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             TTCCHHHHHHHGGGTCCCCCCTTB-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCCHHHHHHHHHhcCCCCCCccC-------------CHHHHHHH-----HHHcCCChhHCcCHHHHHHH
Confidence            555555555666555555444442             26778888     99999999999999999876

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.4e-29  Score=236.26  Aligned_cols=149  Identities=19%  Similarity=0.268  Sum_probs=115.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+++++.||+.||+|||+++|+||||||+|||++.++++||+|||+++....                           
T Consensus       103 ~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~---------------------------  155 (262)
T d1byga_         103 DCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASS---------------------------  155 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC---------------------------------
T ss_pred             HHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCC---------------------------
Confidence            45789999999999999999999999999999999999999999999985421                           


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                       ......+|+.|+|||++.   +..|+.++  ||||+              ||++|||++ +++               |
T Consensus       156 -~~~~~~~~~~y~aPE~l~---~~~~t~~s--DIwSf--------------G~il~el~t~~~~---------------p  200 (262)
T d1byga_         156 -TQDTGKLPVKWTAPEALR---EKKFSTKS--DVWSF--------------GILLWEIYSFGRV---------------P  200 (262)
T ss_dssp             -------CCTTTSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSCC---------------S
T ss_pred             -CCccccccccCCChHHHh---CCCCChHH--HHHhH--------------HHHHHHHHHCCCC---------------C
Confidence             223346789999999998   67888888  99999              999999876 443               4


Q ss_pred             CCCchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...+.......+.++..+.+|...             +++..+||     ++||+.||++|||+.|+++
T Consensus       201 ~~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~~~li-----~~cl~~dP~~Rps~~~l~~  252 (262)
T d1byga_         201 YPRIPLKDVVPRVEKGYKMDAPDGC-------------PPAVYEVM-----KNCWHLDAAMRPSFLQLRE  252 (262)
T ss_dssp             CTTSCGGGHHHHHTTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCCCCCccC-------------CHHHHHHH-----HHHcccCHhHCcCHHHHHH
Confidence            4455555566666655555555542             27778888     9999999999999998876

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.6e-29  Score=238.03  Aligned_cols=154  Identities=25%  Similarity=0.328  Sum_probs=116.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      +.+.+++.||+.||+|||++||+||||||+|||++.++.+||+|||+|+......                      ...
T Consensus       111 ~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~----------------------~~~  168 (273)
T d1u46a_         111 GTLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQND----------------------DHY  168 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-C----------------------CEE
T ss_pred             HHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCC----------------------Ccc
Confidence            4678999999999999999999999999999999999999999999998653210                      111


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      .......||..|+|||++.   +..|+.++  ||||+              ||++|||++ |.+               |
T Consensus       169 ~~~~~~~~~~~~~aPE~~~---~~~~~~~~--Di~S~--------------Gvil~emlt~G~~---------------P  214 (273)
T d1u46a_         169 VMQEHRKVPFAWCAPESLK---TRTFSHAS--DTWMF--------------GVTLWEMFTYGQE---------------P  214 (273)
T ss_dssp             EC-----CCGGGCCHHHHH---HCEEEHHH--HHHHH--------------HHHHHHHHTTSCC---------------T
T ss_pred             eecCccccCcccCCHHHHh---CCCCCcch--hhhhh--------------HHHHHHHHhCCCC---------------C
Confidence            2334456788999999998   67889888  99999              999999875 433               5


Q ss_pred             CCCchhhhhhhhhccCC-CCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhh
Q psy7309         161 STGSNVQKSLQKFQKSP-PSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNL  229 (454)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l  229 (454)
                      +.+.+..+....+.... .+..+..             .++.+.++|     .+||+.||++|||++|++
T Consensus       215 f~~~~~~~~~~~i~~~~~~~~~~~~-------------~~~~l~~li-----~~cl~~dp~~RPt~~ei~  266 (273)
T d1u46a_         215 WIGLNGSQILHKIDKEGERLPRPED-------------CPQDIYNVM-----VQCWAHKPEDRPTFVALR  266 (273)
T ss_dssp             TTTCCHHHHHHHHHTSCCCCCCCTT-------------CCHHHHHHH-----HHHTCSSGGGSCCHHHHH
T ss_pred             CCCcCHHHHHHHHHhCCCCCCCccc-------------ccHHHHHHH-----HHHcCCChhHCcCHHHHH
Confidence            55555555555554332 2222222             226677888     999999999999999876

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-28  Score=239.60  Aligned_cols=157  Identities=20%  Similarity=0.234  Sum_probs=116.7

Q ss_pred             hHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCCC
Q psy7309           3 RAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHDT   82 (454)
Q Consensus         3 ~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (454)
                      .+.+++.|++.||.|||++||+||||||+|||++.++.+||+|||+++.......                     ....
T Consensus       131 ~~~~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~---------------------~~~~  189 (311)
T d1r0pa_         131 DLIGFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEF---------------------DSVH  189 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTC---------------------CCTT
T ss_pred             HHHHHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhcccccc---------------------ccce
Confidence            5778999999999999999999999999999999999999999999986532111                     1122


Q ss_pred             CCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcCCCCC
Q psy7309          83 SHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRRENGPST  162 (454)
Q Consensus        83 ~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~~p~~  162 (454)
                      ......||+.|+|||++.   ...++.++  ||||+              |+++||+++++.              +|..
T Consensus       190 ~~~~~~gt~~y~aPE~~~---~~~~~~ks--DI~Sf--------------Givl~El~t~~~--------------p~~~  236 (311)
T d1r0pa_         190 NKTGAKLPVKWMALESLQ---TQKFTTKS--DVWSF--------------GVLLWELMTRGA--------------PPYP  236 (311)
T ss_dssp             CTTCSSCCGGGSCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTSC--------------CSCC
T ss_pred             ecccccccccccChHHHh---cCCCCChh--Hhhhh--------------HHHHHHHHHCCC--------------CCCC
Confidence            334568999999999988   67789898  99999              999999766332              1112


Q ss_pred             CchhhhhhhhhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhcC
Q psy7309         163 GSNVQKSLQKFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLCQ  231 (454)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~h  231 (454)
                      ..+.......+..+..+..|...             ++.+.+|+     .+||+.||++|||+.|+++|
T Consensus       237 ~~~~~~~~~~i~~g~~~~~p~~~-------------~~~l~~li-----~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         237 DVNTFDITVYLLQGRRLLQPEYC-------------PDPLYEVM-----LKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             ------CHHHHHTTCCCCCCTTC-------------CHHHHHHH-----HHHTCSSGGGSCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCcccC-------------cHHHHHHH-----HHHcCCCHhHCcCHHHHHHH
Confidence            22222233333334444444332             26677888     99999999999999999987

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=3.7e-29  Score=242.61  Aligned_cols=179  Identities=20%  Similarity=0.188  Sum_probs=119.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc---CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcc
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY---EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFY   78 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~---~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (454)
                      ..+.+++.|++.||+|||++|||||||||+|||++.   +..+||+|||+|+.+......                  ..
T Consensus       103 ~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~------------------~~  164 (299)
T d1ckia_         103 KTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTH------------------QH  164 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTC------------------CB
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccc------------------cc
Confidence            468899999999999999999999999999999864   446999999999865321100                  00


Q ss_pred             cCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCchhhHHHHHHHhhhcC
Q psy7309          79 SHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRPKTLEELKHNIRREN  158 (454)
Q Consensus        79 ~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~~~~~~l~~~i~~~~  158 (454)
                      .........+||+.|||||++.   +..|+.++  ||||+              ||++|||++|+.+             
T Consensus       165 ~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~~l~el~tg~~P-------------  212 (299)
T d1ckia_         165 IPYRENKNLTGTARYASINTHL---GIEQSRRD--DLESL--------------GYVLMYFNLGSLP-------------  212 (299)
T ss_dssp             CCCCBCCSCCCCSSSCCHHHHT---TBCCCHHH--HHHHH--------------HHHHHHHHHSSCT-------------
T ss_pred             eeccccCCcCCCccccCHHHHh---CCCCCChh--hEEec--------------CHHHHHHHhCCCc-------------
Confidence            1223345678999999999998   67799999  99999              9999997765542             


Q ss_pred             CCCCCchhhhh---hhhhc-cCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChh---hhhcC
Q psy7309         159 GPSTGSNVQKS---LQKFQ-KSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSE---QNLCQ  231 (454)
Q Consensus       159 ~p~~~~~~~~~---~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~---e~l~h  231 (454)
                        +........   ..+.. .......+...          ...+++..+++     ..||+.||++||+++   ++|+|
T Consensus       213 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~p~~~~~li-----~~cl~~~p~~RP~~~~i~~~l~~  275 (299)
T d1ckia_         213 --WQGLKAATKRQKYERISEKKMSTPIEVLC----------KGYPSEFATYL-----NFCRSLRFDDKPDYSYLRQLFRN  275 (299)
T ss_dssp             --TCCCC-------HHHHHHHHHHSCHHHHT----------TTSCHHHHHHH-----HHHHHSCTTCCCCHHHHHHHHHH
T ss_pred             --ccccchHHHHHHHHHhhcccCCCChhHhc----------cCCCHHHHHHH-----HHHccCChhHCcCHHHHHHHHHH
Confidence              211110000   00000 00000001000          11225667788     999999999999987   55788


Q ss_pred             cccccCCCCCCCccCcc
Q psy7309         232 PISLEGSSSGLSVLGSE  248 (454)
Q Consensus       232 p~f~~~~~~~~~~~~~~  248 (454)
                      +|........ ..+||+
T Consensus       276 ~~~~~~~~~~-~~~Dw~  291 (299)
T d1ckia_         276 LFHRQGFSYD-YVFDWN  291 (299)
T ss_dssp             HHHHHTCCCS-CCCHHH
T ss_pred             HHHHcCCCCC-CCcCch
Confidence            8876554432 234554

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6e-28  Score=235.56  Aligned_cols=154  Identities=24%  Similarity=0.317  Sum_probs=115.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCCcccCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTAFYSHD   81 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (454)
                      ..+++++.||+.||+|||++||+||||||+|||++.++.+||+|||+++.....                       ...
T Consensus       145 ~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~-----------------------~~~  201 (311)
T d1t46a_         145 EDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKND-----------------------SNY  201 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSC-----------------------TTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecccccccccccccCcccccccchheeccCC-----------------------Ccc
Confidence            367899999999999999999999999999999999999999999999855321                       112


Q ss_pred             CCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecC-CchhhHHHHHHHhhhcCCC
Q psy7309          82 TSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYK-DRPKTLEELKHNIRRENGP  160 (454)
Q Consensus        82 ~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~-~~~~~~~~l~~~i~~~~~p  160 (454)
                      ...+...||+.|+|||++.   +..|+.++  ||||+              ||++|||++ +.+               |
T Consensus       202 ~~~~~~~gt~~y~aPE~~~---~~~~~~~~--DIwS~--------------G~~l~ellt~g~p---------------~  247 (311)
T d1t46a_         202 VVKGNARLPVKWMAPESIF---NCVYTFES--DVWSY--------------GIFLWELFSLGSS---------------P  247 (311)
T ss_dssp             EECSSSEECGGGCCHHHHH---HCCCCHHH--HHHHH--------------HHHHHHHHTTTCC---------------S
T ss_pred             eEeeecccChHHcCHHHhc---CCCCCCcc--cccch--------------HHHHHHHHhCCCC---------------C
Confidence            2334578999999999998   67889999  99999              999999875 333               2


Q ss_pred             CCCchhhhhhh-hhccCCCCCCCccccccccccccccccccchhHHHHHHHHhhhcCCCCCCCCChhhhhc
Q psy7309         161 STGSNVQKSLQ-KFQKSPPSVYREWRSSFEWSTVRNNIKSNFQHFLILIHQQKWCLNHDPSKRPSSEQNLC  230 (454)
Q Consensus       161 ~~~~~~~~~~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~L~~dP~~Rpta~e~l~  230 (454)
                      +...+....+. .+.....+..|..             .++.+.+||     .+||+.||++|||++|+++
T Consensus       248 ~~~~~~~~~~~~~i~~~~~~~~~~~-------------~~~~l~~Li-----~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         248 YPGMPVDSKFYKMIKEGFRMLSPEH-------------APAEMYDIM-----KTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             STTCCSSHHHHHHHHHTCCCCCCTT-------------SCHHHHHHH-----HHHTCSSGGGSCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHhcCCCCCCccc-------------ccHHHHHHH-----HHHcCCChhHCcCHHHHHH
Confidence            22222222222 2222333333332             126677888     9999999999999998775

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-27  Score=232.98  Aligned_cols=105  Identities=27%  Similarity=0.348  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHHHHHHHHH--------cCCcccCCCCCcEEEccCCCeEEecccchhhhhhhcCCCccccccCccCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHS--------QGIIHRDLKPVNIFIDYEDHVKIGDFGLATNILQKHAGPLARELTGYILPPID   73 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~--------~giiHrDLKp~NILl~~~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~   73 (454)
                      +.+++++.|++.||+|+|+        +|||||||||+|||++.++.+||+|||+++.......                
T Consensus       100 ~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~----------------  163 (303)
T d1vjya_         100 EGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATD----------------  163 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCc----------------
Confidence            4678999999999999996        5999999999999999999999999999986532110                


Q ss_pred             CCCcccCCCCCcCcccccceecccccccc---ccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCc
Q psy7309          74 STAFYSHDTSHTGQVGTALYAAPELDSHG---VKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDR  143 (454)
Q Consensus        74 ~~~~~~~~~~~~~~~gT~~Y~aPE~~~~~---~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~  143 (454)
                           .........+||+.|+|||++...   ....++.++  ||||+              ||++|||+++.
T Consensus       164 -----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~k~--Di~S~--------------Gvvl~el~tg~  215 (303)
T d1vjya_         164 -----TIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRA--DIYAM--------------GLVFWEIARRC  215 (303)
T ss_dssp             -----EECC----CCSCGGGCCHHHHTTCSCTTCHHHHHHH--HHHHH--------------HHHHHHHHHTB
T ss_pred             -----ceeccccceecccCcCChhhccccccccCCCcCcch--hhhhh--------------HHHHHHHhhCC
Confidence                 112234457899999999998621   112467777  99999              88888876654

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.92  E-value=5e-27  Score=227.06  Aligned_cols=106  Identities=15%  Similarity=0.169  Sum_probs=84.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEcc-----CCCeEEecccchhhhhhhcCCCccccccCccCCCCCCCC
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDY-----EDHVKIGDFGLATNILQKHAGPLARELTGYILPPIDSTA   76 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~-----~~~vKL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (454)
                      ..+.+++.|++.||+|||++|||||||||+|||++.     .+.+||+|||+|+........                  
T Consensus       101 ~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~------------------  162 (293)
T d1csna_         101 KTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTK------------------  162 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTC------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccc------------------
Confidence            357889999999999999999999999999999974     567999999999865321110                  


Q ss_pred             cccCCCCCcCcccccceeccccccccccccccccCCccccchhhhHHHHHHHHHhcceeeeeecCCch
Q psy7309          77 FYSHDTSHTGQVGTALYAAPELDSHGVKAMYNQFTPQNYFSKQQKAFYVEILRVLWGYLKAEVYKDRP  144 (454)
Q Consensus        77 ~~~~~~~~~~~~gT~~Y~aPE~~~~~~~~~~~~~~~~DiwSl~~~~~~~~~~~~~~G~il~el~~~~~  144 (454)
                      ...........+||+.|||||++.   +..|+.++  ||||+              ||++|||++|..
T Consensus       163 ~~~~~~~~~~~~GT~~y~aPE~~~---~~~~~~~~--DiwSl--------------G~~l~elltg~~  211 (293)
T d1csna_         163 QHIPYREKKNLSGTARYMSINTHL---GREQSRRD--DLEAL--------------GHVFMYFLRGSL  211 (293)
T ss_dssp             CBCCCCCCCCCCSCTTTCCHHHHT---TCCCCHHH--HHHHH--------------HHHHHHHHHSSC
T ss_pred             cceeecccCceEEchhhcCHHHhc---CCCCChHH--HHHHh--------------hHHHHHHHhCCC
Confidence            001223345678999999999998   67799999  99999              999999766543

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.38  E-value=2.9e-14  Score=127.64  Aligned_cols=50  Identities=26%  Similarity=0.419  Sum_probs=44.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHcCCcccCCCCCcEEEccCCCeEEecccchhhh
Q psy7309           2 GRAWRLLREIIEGLSHIHSQGIIHRDLKPVNIFIDYEDHVKIGDFGLATNI   52 (454)
Q Consensus         2 ~~i~~i~~qil~gL~~LH~~giiHrDLKp~NILl~~~~~vKL~DFGla~~~   52 (454)
                      +.+..++.|++.||+|||++||+||||||+|||++.+ .++|+|||+|+..
T Consensus       103 ~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~  152 (191)
T d1zara2         103 ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEV  152 (191)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEET
T ss_pred             HHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccC
Confidence            3577899999999999999999999999999999854 5999999998743

>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]

Probab=99.06  E-value=4.8e-10  Score=105.11  Aligned_cols=139  Identities=14%  Similarity=0.073  Sum_probs=103.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-------ccccEEEEcC----CCCeEeeCCCCCHHHHHHH
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-------SETTASVMTR----GGSIVTLPHDLRIPFARYL  377 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-------~~~~~~~~d~----~G~~~~Lr~d~T~p~aR~~  377 (454)
                      |.-..+++.|++.+++.+.++||.+|.||.|.+.+++..+       .+.++.+.+.    .++.++|||--..++++.+
T Consensus        32 P~G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~  111 (268)
T d1nj8a3          32 PYGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMM  111 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhh
Confidence            7888899999999999999999999999999999986432       2567777643    3456999999999999988


Q ss_pred             HHcCC---CCceeeEeecCccccCCCCCC---ccceEEEE-EEEEEcCCCCcccH---HHHHHHHHHHHHhCCCCCcEEE
Q psy7309         378 AQNGS---IVSMKRYCIDRVFRERRVLGF---HPRELYEC-AFDIVTNTPGVLTM---GSLRRCLMGSFRRFNYGNISFA  447 (454)
Q Consensus       378 a~~~~---~~~~k~~y~g~vfR~~~~~~g---~~rE~~Q~-g~eiig~~~~~~~d---~e~~~~~~~~l~~~~~~~~~i~  447 (454)
                      +....   .+|+|+|++|+|||++..+.+   |-|||+|. ++-++..+ ...++   .+++.+..++++.+|+.-..+.
T Consensus       112 ~~~~~Syr~LP~r~~e~~~~fR~E~~~~~GllR~reF~~~dd~~~~~~~-~~~~~~~~~~~~~~y~~if~~l~l~~~~~~  190 (268)
T d1nj8a3         112 KLWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHST-KEEAENQVKEAISIYKKFFDTLGIPYLISK  190 (268)
T ss_dssp             HTTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHTCCCEEEE
T ss_pred             hhhccchhhhheEEeeccccccccccccccceeEEEEeeechhceeccc-cchhhHHHHHHHHHHHHHHHhcCcceeecc
Confidence            75321   579999999999999854333   78999854 45555443 22222   2344556668888998655544


Q ss_pred             c
Q psy7309         448 P  448 (454)
Q Consensus       448 i  448 (454)
                      .
T Consensus       191 ~  191 (268)
T d1nj8a3         191 R  191 (268)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=2.6e-09  Score=101.02  Aligned_cols=142  Identities=8%  Similarity=0.026  Sum_probs=113.6

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcC-
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQNG-  381 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~-  381 (454)
                      |.-..+++.|.+-+++.+.++||++|.||.|.+.+++..+      .+++|.+.+ .++.++|+|=--.+++.+++... 
T Consensus        27 P~G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~-~~~~~~L~Pt~e~~~~~~~~~~~~  105 (291)
T d1qf6a4          27 NDGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSS-ENREYCIKPMNCPGHVQIFNQGLK  105 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEE-TTEEEEECSSSHHHHHHHHTTSCE
T ss_pred             cCHHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhccccc-cchhhcccccCcHHHHHHHHcccc
Confidence            7777899999999999999999999999999999987643      267888655 46889999999999998776431 


Q ss_pred             --CCCceeeEeecCccccCCCC--CC--ccceEEEEEEEEEcCCCCc-ccHHHHHHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         382 --SIVSMKRYCIDRVFRERRVL--GF--HPRELYECAFDIVTNTPGV-LTMGSLRRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       382 --~~~~~k~~y~g~vfR~~~~~--~g--~~rE~~Q~g~eiig~~~~~-~~d~e~~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                        ..+|+|+|.++++||++..+  .|  |.|||++-+.=++..+... ..-.+++.++.++++.+|+..+.+++..|
T Consensus       106 sy~~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~f~~~e~~~~e~~~~~~~~~~i~~~lGl~~~~v~~s~~  182 (291)
T d1qf6a4         106 SYRDLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHIFCTEEQIRDEVNGCIRLVYDMYSTFGFEKIVVKLSTR  182 (291)
T ss_dssp             EGGGCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHGGGTCCCCEEEEECC
T ss_pred             chhhcCeeEeecceeeecccccccccccccccceeccceeEecchhhHHHHHHHHHHHHHHHHHcCCceEEEEEecC
Confidence              15899999999999997432  24  8899999999998865211 11235778889999999998888877654

>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Threonyl-tRNA synthetase (ThrRS)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.84  E-value=4.1e-09  Score=99.62  Aligned_cols=144  Identities=11%  Similarity=0.050  Sum_probs=114.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEc-CCCCeEeeCCCCCHHHHHHHHHc
Q psy7309         308 RSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMT-RGGSIVTLPHDLRIPFARYLAQN  380 (454)
Q Consensus       308 ~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d-~~G~~~~Lr~d~T~p~aR~~a~~  380 (454)
                      .|.-..+++.|++-+++.+.++||++|.||.|.+.++...+      .+++|.+.+ .+++.++|+|=--.+++.+.+..
T Consensus        26 ~p~G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~  105 (291)
T d1nyra4          26 LPNGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANK  105 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTS
T ss_pred             ehhHHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcE
Confidence            36777899999999999999999999999999999987543      367887764 56889999999888888776643


Q ss_pred             C---CCCceeeEeecCccccCCCCC----CccceEEEEEEEEEcCCC-CcccHHHHHHHHHHHHHhCCCCCcEEEcCcc
Q psy7309         381 G---SIVSMKRYCIDRVFRERRVLG----FHPRELYECAFDIVTNTP-GVLTMGSLRRCLMGSFRRFNYGNISFAPHPR  451 (454)
Q Consensus       381 ~---~~~~~k~~y~g~vfR~~~~~~----g~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~~~~l~~~~~~~~~i~i~~~  451 (454)
                      -   ..+|+|+|.+++|||++..+.    -|-|||.|.+.=++..+. +...-.+++.++.++++.||+..+.+++..+
T Consensus       106 ~~sy~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f~~~eq~~~e~~~~~~~~~~i~~~lGl~~~~v~~~~~  184 (291)
T d1nyra4         106 PHSYRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIFVRPDQIKEEFKRVVNMIIDVYKDFGFEDYSFRLSYR  184 (291)
T ss_dssp             CCBGGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEEECGGGHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEC
T ss_pred             eccccccceEEeeccceeecCCCcccccccceeeeeeeeheeecCCcccHHHHHHHHHHHHHHhhhcCcCceEEEEecC
Confidence            1   158999999999999976332    367999999998887542 1222345777888899999998888877554

>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]

Probab=98.82  E-value=1e-08  Score=95.66  Aligned_cols=139  Identities=16%  Similarity=0.101  Sum_probs=101.2

Q ss_pred             CchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-------ccccEEEE----cCCCCeEeeCCCCCHHHHHH
Q psy7309         308 RSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-------SETTASVM----TRGGSIVTLPHDLRIPFARY  376 (454)
Q Consensus       308 ~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-------~~~~~~~~----d~~G~~~~Lr~d~T~p~aR~  376 (454)
                      .|.-..+++.|++.++... ..||.+|.||+|.+.+.+...       .+++|.+.    |+.++.++|||---.+++.+
T Consensus        29 lP~G~~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~  107 (265)
T d1nj1a3          29 MPHGFMIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPM  107 (265)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEe
Confidence            3888889999999998875 559999999999887755332       26889887    55678899999888888888


Q ss_pred             HHHcC---CCCceeeEeecCccccCCCCCC---ccceEEEEE-EEEEcCCCCcccHH---HHHHHHHHHHHhCCCCCcEE
Q psy7309         377 LAQNG---SIVSMKRYCIDRVFRERRVLGF---HPRELYECA-FDIVTNTPGVLTMG---SLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       377 ~a~~~---~~~~~k~~y~g~vfR~~~~~~g---~~rE~~Q~g-~eiig~~~~~~~d~---e~~~~~~~~l~~~~~~~~~i  446 (454)
                      ++...   ..+|+|+|++|++||++..+..   |.|||+|.- .-++-.+ ...+..   .++....+++..+|+.-..+
T Consensus       108 ~~~~~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~-~~~~~~e~~~~~~~~~~~~~~l~l~~~~~  186 (265)
T d1nj1a3         108 FALWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHAT-ASEAEEQVERAVEIYKEFFNSLGIPYLIT  186 (265)
T ss_dssp             HHHHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHTCCCEEE
T ss_pred             eeeeeccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCC-HHHHHHHhhhhHHHHHHHHhhcCCceeEE
Confidence            77532   1589999999999999854332   789998753 3333333 233333   35566667888888865554


Q ss_pred             Ec
Q psy7309         447 AP  448 (454)
Q Consensus       447 ~i  448 (454)
                      ..
T Consensus       187 ~~  188 (265)
T d1nj1a3         187 RR  188 (265)
T ss_dssp             EC
T ss_pred             Ec
Confidence            44

>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Prolyl-tRNA synthetase (ProRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.67  E-value=8.5e-08  Score=89.39  Aligned_cols=133  Identities=15%  Similarity=0.097  Sum_probs=102.1

Q ss_pred             CchhhHHHHHHHHHHHHHHHhcCCccccCCCcccccccccc-------ccccEEEEcCCC----CeEeeCCCCCHHHHHH
Q psy7309         308 RSANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT-------SETTASVMTRGG----SIVTLPHDLRIPFARY  376 (454)
Q Consensus       308 ~~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~-------~~~~~~~~d~~G----~~~~Lr~d~T~p~aR~  376 (454)
                      .|.-..+++.|++-+.+.+.++||.+|.||.|.+.+.+...       .+++|.+.+.++    +.++|+|--..+++..
T Consensus        36 lP~G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~  115 (272)
T d1hc7a2          36 RPYGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYM  115 (272)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeeh
Confidence            37888899999999999999999999999999998876542       257888887654    4589999999999988


Q ss_pred             HHHcCC---CCceeeEeecCccccCCCCC--CccceEEEEEEEEEcCCCCcccHHH---HHHHHHHHHHhCCC
Q psy7309         377 LAQNGS---IVSMKRYCIDRVFRERRVLG--FHPRELYECAFDIVTNTPGVLTMGS---LRRCLMGSFRRFNY  441 (454)
Q Consensus       377 ~a~~~~---~~~~k~~y~g~vfR~~~~~~--g~~rE~~Q~g~eiig~~~~~~~d~e---~~~~~~~~l~~~~~  441 (454)
                      +.....   .+|+|+|.++.+||++..+.  ++-|+|.+.+++.+... ...++.|   +.....+.+..++.
T Consensus       116 ~~~~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  187 (272)
T d1hc7a2         116 WSKWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT-REEAEEEVRRMLSIYARLAREYAA  187 (272)
T ss_dssp             HHHHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhceeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcc-cccchhHHHHHHHHHHHHHHHhcc
Confidence            775321   58999999999999976544  47799999999999765 4444443   33344445555443

>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=98.46  E-value=1e-07  Score=91.50  Aligned_cols=142  Identities=10%  Similarity=0.041  Sum_probs=100.1

Q ss_pred             chhhHHHHHHHHHHHHHH--HhcCCccccCCCccccccccccc------cccEEEE----------------------cC
Q psy7309         309 SANFSLLESTGDKLRRIF--QLHGGAHFQTPLLTPLNSLTATS------ETTASVM----------------------TR  358 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f--~~~G~~~i~tp~le~~~~~~~~~------~~~~~~~----------------------d~  358 (454)
                      |.-..+++.|++.+++-|  .+.|+.+|.||.+.|.+++..++      +.|+...                      ..
T Consensus        36 P~G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (331)
T d1b76a2          36 PLGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGG  115 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCC
T ss_pred             CcHHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccc
Confidence            677789999999999977  58899999999999998875432      2333221                      12


Q ss_pred             CCCeEeeCCCCCHHHHHHH----HHcCCCCceeeEeecCccccCCCC---CCccceEEEEEEEEEcCCC-CcccHHHHHH
Q psy7309         359 GGSIVTLPHDLRIPFARYL----AQNGSIVSMKRYCIDRVFRERRVL---GFHPRELYECAFDIVTNTP-GVLTMGSLRR  430 (454)
Q Consensus       359 ~G~~~~Lr~d~T~p~aR~~----a~~~~~~~~k~~y~g~vfR~~~~~---~g~~rE~~Q~g~eiig~~~-~~~~d~e~~~  430 (454)
                      .+...-|||...-++--.+    -.....+|+++|++|+|||++..+   -.|.|||+|.+++++-.+. ...--...+.
T Consensus       116 ~~~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s~~~gl~RvReFtq~D~~~F~~~~q~~~~~~~~~~  195 (331)
T d1b76a2         116 RGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRPGEDEYWHRYWVE  195 (331)
T ss_dssp             GGGEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSSCCTTTTSCSEEEEEEEEEEECGGGHHHHHHHHHH
T ss_pred             cCCcccccCcchhhHHHHHHhHHhccccccchhhhhccceecccccccccccccchhhhhhhhhhcCCcchhHHHHHHHH
Confidence            3556677777765543222    222226999999999999985422   2478999999999997642 1122344666


Q ss_pred             HHHHHHHhCCCCCcEEEcCc
Q psy7309         431 CLMGSFRRFNYGNISFAPHP  450 (454)
Q Consensus       431 ~~~~~l~~~~~~~~~i~i~~  450 (454)
                      .+.+.+..+|+.++.++...
T Consensus       196 ~~~~~~~~~g~~~~~lr~~~  215 (331)
T d1b76a2         196 ERLKWWQEMGLSRENLVPYQ  215 (331)
T ss_dssp             HHHHHHHHTTCCGGGEEEEE
T ss_pred             HHHHHHHHhhccchheeeee
Confidence            78888889998777776543

>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS
species: Thermus thermophilus [TaxId: 274]

Probab=98.16  E-value=9.2e-06  Score=74.28  Aligned_cols=130  Identities=15%  Similarity=0.091  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCccccc----ccc-c------cccccEEEEcCC-----------CCeEeeCCCCCH
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLN----SLT-A------TSETTASVMTRG-----------GSIVTLPHDLRI  371 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~----~~~-~------~~~~~~~~~d~~-----------G~~~~Lr~d~T~  371 (454)
                      -...+++.|+++|...||.+++.|-+|...    .+. .      ....+|-+-+..           -..+.||...|.
T Consensus        18 Pl~~~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~   97 (266)
T d1jjca_          18 PITLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSP   97 (266)
T ss_dssp             HHHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTH
T ss_pred             hHHHHHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcH
Confidence            367889999999999999999999877431    111 0      113456554432           135789999999


Q ss_pred             HHHHHHHHcCCCCceeeEeecCccccCCCCCCccceEEEEEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCCcEEEc
Q psy7309         372 PFARYLAQNGSIVSMKRYCIDRVFRERRVLGFHPRELYECAFDIVTNTPGVLTMGSLRRCLMGSFRRFNYGNISFAP  448 (454)
Q Consensus       372 p~aR~~a~~~~~~~~k~~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~~~~~d~e~~~~~~~~l~~~~~~~~~i~i  448 (454)
                      =-+|.+..+  ..|.|+++.|+|||++.....|.-+|+|+..=+++..   ..-+.+..++.++++.++..+++++.
T Consensus        98 ~q~r~~~~~--~~p~~~~~~g~VyRrd~iD~tH~p~FhQ~eg~~vd~~---~~~~~Lk~~l~~~~~~~f~~~~~~R~  169 (266)
T d1jjca_          98 MQVRYMVAH--TPPFRIVVPGRVFRFEQTDATHEAVFHQLEGLVVGEG---IAMAHLKGAIYELAQALFGPDSKVRF  169 (266)
T ss_dssp             HHHHHHHHS--CSSEEEEEEEEEECCSCCCSSCCSEEEEEEEEEEETT---CCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHHhcc--CCCceEEecccceecCCCCCcccccceeeeeeecccc---ccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            889987765  4799999999999998888999999999999888875   24466777888888887655655543

>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=9.3e-06  Score=78.01  Aligned_cols=103  Identities=17%  Similarity=0.186  Sum_probs=79.3

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEE-cCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeE
Q psy7309         311 NFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM-TRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       311 ~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~-d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      .+.+|..|...+++.|...||.+|+||+|...+.-  +....+... +..|+...|+---.+..=|.++..    --|.|
T Consensus        31 ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~--g~~~~~~~~~~~~~~~~~L~~Spel~lk~ll~~g----~~~Vf  104 (346)
T d1c0aa3          31 RLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPE--GARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSG----FDRYY  104 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSS--SSCCCEEECSSSTTCEEECCSCSHHHHHHHHHTT----CCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCc--cccccccccccCCCccccCCcCHHHHHHHHhhcC----CCceE
Confidence            44589999999999999999999999999665432  122333332 456888888887777777766632    24999


Q ss_pred             eecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         390 CIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       390 y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      +||+|||.+.....|--||+++.++..+.+
T Consensus       105 ~i~~~FR~E~~~~~H~~EFtmLE~e~a~~~  134 (346)
T d1c0aa3         105 QIVKCFRDEDLRADRQPEFTQIDVETSFMT  134 (346)
T ss_dssp             EEEEEECCCCCBTTBCSEEEEEEEEEESCC
T ss_pred             EEeeeccccccCchhhhHhhhhcccccccc
Confidence            999999998777777789999999988864

>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.10  E-value=1e-05  Score=77.95  Aligned_cols=102  Identities=15%  Similarity=0.138  Sum_probs=74.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeEe
Q psy7309         311 NFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRYC  390 (454)
Q Consensus       311 ~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~y  390 (454)
                      .+.+|.+|...+++.|...||.+|+||+|.....  ....+.|.+.-- +...-|+----+..-|.++..    --|.|+
T Consensus        43 ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~~--eg~~~~f~~~~~-~~~~yL~~Spel~lk~ll~~g----~~~vf~  115 (353)
T d1eova2          43 IFRIQAGVCELFREYLATKKFTEVHTPKLLGAPS--EGGSSVFEVTYF-KGKAYLAQSPQFNKQQLIVAD----FERVYE  115 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCS--SSSSCCCEEEET-TEEEEECSCTHHHHHHHHHTT----CCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCC--cchhccccceee-CCcceeccchhhhhhhhhhcc----ccccee
Confidence            3558999999999999999999999999976653  222345554333 334457776666666776643    239999


Q ss_pred             ecCccccCCCCCC-ccceEEEEEEEEEcCC
Q psy7309         391 IDRVFRERRVLGF-HPRELYECAFDIVTNT  419 (454)
Q Consensus       391 ~g~vfR~~~~~~g-~~rE~~Q~g~eiig~~  419 (454)
                      ||+|||.+..... |.-||+++.++..+.+
T Consensus       116 I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d  145 (353)
T d1eova2         116 IGPVFRAENSNTHRHMTEFTGLDMEMAFEE  145 (353)
T ss_dssp             EEEEECCCCCCCTTCCSEEEEEEEEEECSS
T ss_pred             echhhhccccccccccchhcccccccccch
Confidence            9999998665443 5469999999988765

>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Lysyl-tRNA synthetase (LysRS)
species: Escherichia coli, gene lysU [TaxId: 562]

Probab=98.06  E-value=1.9e-05  Score=75.70  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=78.0

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEE-cCCCCeEeeCCCCCHHHHHHHHHcCCCCceee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVM-TRGGSIVTLPHDLRIPFARYLAQNGSIVSMKR  388 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~-d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~  388 (454)
                      ..+.+|..|...+++.|..+||.+|+||+|...+.  ......|.+- +..|....|+.---+..-+.++...    -|+
T Consensus        21 ~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~--~~~~~~f~~~~~~~~~~~yL~~Spql~~k~~l~~g~----~~v   94 (342)
T d1e1oa2          21 QTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPG--GASARPFITHHNALDLDMYLRIAPELYLKRLVVGGF----ERV   94 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCC--SSCCCCCEEEETTTTEEEEECSCSHHHHHHHHHHTC----CEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCC--CCCCcceeecccCCCcccccchhhHHHHHHHhhhcc----cce
Confidence            34568999999999999999999999999854321  1223455543 4566677788777666666666432    499


Q ss_pred             EeecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         389 YCIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       389 ~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      |++|+|||.+....-|.-||+|..+|..+.+
T Consensus        95 f~i~p~FR~E~~~~rHl~EFtmlE~e~a~~~  125 (342)
T d1e1oa2          95 FEINRNFRNEGISVRHNPEFTMMELYMAYAD  125 (342)
T ss_dssp             EEEEEEECCCCCCC-CCSEEEEEEEEEESCC
T ss_pred             eeeccccccccccccchHHHHHHHHHHHhhh
Confidence            9999999987665667789999999998864

>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]

Probab=98.04  E-value=1.5e-05  Score=76.20  Aligned_cols=103  Identities=16%  Similarity=0.109  Sum_probs=77.2

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeE
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      ..+.+|..|...|++.|..+||.+|+||+|.....-  .....+.+. ..|+.+-|+-.-.+..-|.+|..    --|.|
T Consensus        32 ~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~--~~~~~f~~~-~~~~~~yL~~SpE~~lkrll~~g----~~~if  104 (335)
T d1b8aa2          32 AIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATE--GGTELFPMK-YFEEDAFLAESPQLYKEIMMASG----LDRVY  104 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCS--SSSSCCEEE-ETTEEEEECSCSHHHHHHGGGTT----CCEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCc--hhhhhcccc-ccccccccccChHHHHHHHHhhh----hhhHH
Confidence            345689999999999999999999999999766532  223445543 45777889988777777777642    24999


Q ss_pred             eecCccccCCCCCC-ccceEEEEEEEEEcCC
Q psy7309         390 CIDRVFRERRVLGF-HPRELYECAFDIVTNT  419 (454)
Q Consensus       390 y~g~vfR~~~~~~g-~~rE~~Q~g~eiig~~  419 (454)
                      +||+|||.+..+.. +..||++...+.....
T Consensus       105 ~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~  135 (335)
T d1b8aa2         105 EIAPIFRAEEHNTTRHLNEAWSIDSEMAFIE  135 (335)
T ss_dssp             EEEEEECCCSSCCSSCCSEEEEEEEEEESCS
T ss_pred             HhhcccccccccccccchHHHhhhHHHHHHH
Confidence            99999998765554 4569999877766543

>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Hypothetical protein PF1951
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.93  E-value=3.6e-05  Score=71.93  Aligned_cols=105  Identities=13%  Similarity=0.140  Sum_probs=75.6

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccc-----cccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCC
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTA-----TSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIV  384 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~-----~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~  384 (454)
                      +.+.+|..|...+++.|...||.+|+||++.+...-..     ..-..+++ +-.|+.+.|+.---+-.=|.+|...   
T Consensus        12 ~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~-~~~~~~~yL~~SPel~lk~lla~g~---   87 (293)
T d1nnha_          12 PTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV-EIYGVKMRLTHSMILHKQLAIAMGL---   87 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEE-EETTEEEEECSCSHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCccccccc-cCCCceeecccChhhhHHHHHHhcc---
Confidence            45568999999999999999999999999987543111     11223333 5568889999766666666666432   


Q ss_pred             ceeeEeecCccccCCCCC---CccceEEEEEEEEEcCC
Q psy7309         385 SMKRYCIDRVFRERRVLG---FHPRELYECAFDIVTNT  419 (454)
Q Consensus       385 ~~k~~y~g~vfR~~~~~~---g~~rE~~Q~g~eiig~~  419 (454)
                       -|.|+||+|||.+....   -|.-||++..++....+
T Consensus        88 -~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d  124 (293)
T d1nnha_          88 -KKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK  124 (293)
T ss_dssp             -CEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC
T ss_pred             -ccceeechhhhcCcccCCCCccchhhhhhcccccccc
Confidence             39999999999754322   25569999999987643

>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-1 [TaxId: 274]

Probab=97.88  E-value=4.8e-05  Score=73.15  Aligned_cols=104  Identities=13%  Similarity=0.165  Sum_probs=78.8

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEE-EcCCCCeEeeCCCCCHHHHHHHHHcCCCCceee
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASV-MTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKR  388 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~-~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~  388 (454)
                      .-+.+|..|...+++.|..+||.+|+||+|...+.-  .....+.. .+..|...-|+----+-.-|.++..    --|.
T Consensus        38 ~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~e--g~~~~~~~~~~~~~~~~yL~~Spel~lk~ll~~g----~~~V  111 (356)
T d1l0wa3          38 ENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPE--GARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAG----LDRY  111 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSS--SSCCCEEECTTSTTEEEECCSCSHHHHHHHHHTT----CSEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCc--ccccchhhhhcccccccCCCcChhHHHHHhhhcc----cCcE
Confidence            445589999999999999999999999999655432  12233333 3567777778777666666666632    2499


Q ss_pred             EeecCccccCCCCCCccceEEEEEEEEEcCC
Q psy7309         389 YCIDRVFRERRVLGFHPRELYECAFDIVTNT  419 (454)
Q Consensus       389 ~y~g~vfR~~~~~~g~~rE~~Q~g~eiig~~  419 (454)
                      |++|+|||.+..+.-|--||++..++..+.+
T Consensus       112 f~i~~~FRaE~~~t~H~~EFtmLE~e~~~~~  142 (356)
T d1l0wa3         112 FQIARCFRDEDLRADRQPDFTQLDLEMSFVE  142 (356)
T ss_dssp             EEEEEEECCCCCCSSCCSEEEEEEEEEESCC
T ss_pred             EEEeccccccccCCcchhhhhHHHHhhhHHH
Confidence            9999999998766667779999999999875

>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Thermus thermophilus, AspRS-2 [TaxId: 274]

Probab=97.49  E-value=0.00012  Score=68.68  Aligned_cols=102  Identities=12%  Similarity=0.062  Sum_probs=50.3

Q ss_pred             hhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccccccEEEEcCCCCeEeeCCCCCHHHHHHHHHcCCCCceeeE
Q psy7309         310 ANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATSETTASVMTRGGSIVTLPHDLRIPFARYLAQNGSIVSMKRY  389 (454)
Q Consensus       310 ~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~~~~~~~k~~  389 (454)
                      +...+|.+|...+++.|...||.+|+||+|.....-  .....+.+ +.-|+.+-|+.--.+ .-|.++...    -|.|
T Consensus        13 ~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e--~~~~~f~~-~~~~~~~~L~~Spel-~k~ll~~g~----~~if   84 (304)
T d1n9wa2          13 APLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAE--GGSGLFGV-DYFEKRAYLAQSPQL-YKQIMVGVF----ERVY   84 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCEECCCC-------------------------------CHH-HHHHHHHHH----SEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCC--CCCceECC-cccccchhccccHHH-HHHHhhccc----ccce
Confidence            345689999999999999999999999999654321  11233332 334555666655555 356555432    2899


Q ss_pred             eecCccccCCCCC-CccceEEEEEEEEEcCC
Q psy7309         390 CIDRVFRERRVLG-FHPRELYECAFDIVTNT  419 (454)
Q Consensus       390 y~g~vfR~~~~~~-g~~rE~~Q~g~eiig~~  419 (454)
                      ++|+|||.+.... .|..||++..++.....
T Consensus        85 ~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~  115 (304)
T d1n9wa2          85 EVAPVWRMEEHHTSRHLNEYLSLDVEMGFIA  115 (304)
T ss_dssp             EEEEC-------------CCEEEEEEEESCS
T ss_pred             eehhhcccccccccccccHHHHHHHHHhhhh
Confidence            9999999865333 46679999999987643

>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Seryl-tRNA synthetase (SerRS)
species: Thermus thermophilus, strain hb27 [TaxId: 274]

Probab=96.67  E-value=0.002  Score=60.01  Aligned_cols=126  Identities=7%  Similarity=-0.034  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHHHhcCCccccCCCcccccccccc------ccccEEEEcCCCCeEeeCCCCCHHHHHHHHHc---CCCC
Q psy7309         314 LLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTAT------SETTASVMTRGGSIVTLPHDLRIPFARYLAQN---GSIV  384 (454)
Q Consensus       314 ~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~------~~~~~~~~d~~G~~~~Lr~d~T~p~aR~~a~~---~~~~  384 (454)
                      +..-+.+-..+...++||.+|.+|.|...+++...      .+++|...   +..+.|+|=--+|++-+.+..   ...+
T Consensus        58 Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~~---~~~~~LipTsE~~l~~~~~~~i~~~~~L  134 (311)
T d1seta2          58 YELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA---ETDLYLTGTAEVVLNALHSGEILPYEAL  134 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT---TSSEEECSSTHHHHHHTTTTCEEEGGGC
T ss_pred             HHHHHHHHHHHhhhcccceEEeechhhccchhhhccccccccccccccc---ccceeecccccchhhhhhhhhhhhhhhc
Confidence            44456777777788899999999999998876532      25677663   345899998888877655421   1148


Q ss_pred             ceeeEeecCccccCCCCC-----C--ccceEEEEEEEEEcCCCCccc---HHHHHHHHHHHHHhCCCC
Q psy7309         385 SMKRYCIDRVFRERRVLG-----F--HPRELYECAFDIVTNTPGVLT---MGSLRRCLMGSFRRFNYG  442 (454)
Q Consensus       385 ~~k~~y~g~vfR~~~~~~-----g--~~rE~~Q~g~eiig~~~~~~~---d~e~~~~~~~~l~~~~~~  442 (454)
                      |+|++.+++|||++....     |  |-+||...-.-++.......+   -.|++..+.++++.|++.
T Consensus       135 Plr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~~~~~~~~L~lp  202 (311)
T d1seta2         135 PLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLENAEEILRLLELP  202 (311)
T ss_dssp             SEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHHHHHHHHhhCCc
Confidence            999999999999875332     2  347888877767764412223   446888899999999984

>d1g5ha2 d.104.1.1 (A:41-330) The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: The aaRS-like accessory subunit of mitochondrial polymerase gamma, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.41  E-value=0.0016  Score=60.14  Aligned_cols=139  Identities=10%  Similarity=0.006  Sum_probs=87.8

Q ss_pred             chhhHHHHHHHHHHHHHHHhcCCccccCCCccccccccccc-cccEEEE------------------------cCCCCeE
Q psy7309         309 SANFSLLESTGDKLRRIFQLHGGAHFQTPLLTPLNSLTATS-ETTASVM------------------------TRGGSIV  363 (454)
Q Consensus       309 ~~~~~~~~~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~~~-~~~~~~~------------------------d~~G~~~  363 (454)
                      |.-..+++.|++.+.+.|..-. ..|.+|-.-+.+++.++. ..-+...                        .-+++..
T Consensus        35 P~G~~Lk~ni~~~w~~~~v~~~-~~v~~~d~~~~~~~~~sgh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (290)
T d1g5ha2          35 PLGVELRKNLASQWWSSMVVFR-EQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSG  113 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTC-TTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSC
T ss_pred             CcHHHHHHHHHHHHHHHHHhcc-CceeeccccccccCCCccccchhhhccccccccccccccchhhhhhcceeccccccc
Confidence            5566789999999999875443 456565544444444321 1112221                        1123345


Q ss_pred             eeCCCCCHH----HHHHHHHcCCCCceeeEeecCccccCC----CCC--CccceEEEEEEEEEcCCC-CcccHHHHHHHH
Q psy7309         364 TLPHDLRIP----FARYLAQNGSIVSMKRYCIDRVFRERR----VLG--FHPRELYECAFDIVTNTP-GVLTMGSLRRCL  432 (454)
Q Consensus       364 ~Lr~d~T~p----~aR~~a~~~~~~~~k~~y~g~vfR~~~----~~~--g~~rE~~Q~g~eiig~~~-~~~~d~e~~~~~  432 (454)
                      .|||+....    |.+..-......|++...+|+|||++.    +..  -|.|||.|..++++..+. +...-...+..+
T Consensus       114 yLRPetaqg~~~~fkn~~~~~~~~LPf~iaq~g~~fR~E~~~~~~~~gl~RvReF~q~E~~~F~~pe~~~~~~~~~~~~~  193 (290)
T d1g5ha2         114 KLRATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVWFTPTRTSSQWLDFWLRHR  193 (290)
T ss_dssp             EECSCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEEEECHHHHHHHHHHHHHHH
T ss_pred             eeccccchhHHHHHHHHHhhccCCCCcEEEEeccccccccccCCcccccceeeEeEeeeeEEEeCCcchHHHHHHHHHHH
Confidence            799986543    222221122269999999999999643    222  367999999999998753 233456678899


Q ss_pred             HHHHHhCCCCCcEEEc
Q psy7309         433 MGSFRRFNYGNISFAP  448 (454)
Q Consensus       433 ~~~l~~~~~~~~~i~i  448 (454)
                      .+.++++|+..-.+++
T Consensus       194 ~~~~~~lGi~~~~~~~  209 (290)
T d1g5ha2         194 LLWWRKFAMSPSNFSS  209 (290)
T ss_dssp             HHHHHTTCSSGGGEEE
T ss_pred             HHHHHHcCCChhheee
Confidence            9999999996555544

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.13  E-value=0.0095  Score=54.95  Aligned_cols=30  Identities=33%  Similarity=0.439  Sum_probs=27.0

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .|+||.|+.+.||+++.++..-|.||+.|.
T Consensus       183 ~giIHgDl~~dNvl~~~~~v~gvIDF~~~~  212 (316)
T d2ppqa1         183 AGVIHADLFQDNVFFLGDELSGLIDFYFAC  212 (316)
T ss_dssp             EEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred             cccccCCcchhhhhcccccceeEecccccc
Confidence            489999999999999987767899999886

>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.92  E-value=0.092  Score=45.29  Aligned_cols=121  Identities=17%  Similarity=0.125  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHhcCCccccCCCccccccccc--cccccEEEEcC-CCCeEeeCCCCCHHHHHHHHHcCC---CCceeeEe
Q psy7309         317 STGDKLRRIFQLHGGAHFQTPLLTPLNSLTA--TSETTASVMTR-GGSIVTLPHDLRIPFARYLAQNGS---IVSMKRYC  390 (454)
Q Consensus       317 ~i~~~l~~~f~~~G~~~i~tp~le~~~~~~~--~~~~~~~~~d~-~G~~~~Lr~d~T~p~aR~~a~~~~---~~~~k~~y  390 (454)
                      +.+++|++.+...||.|+.|-+|...+....  ..+..+++.++ +-+.-+||+.+...+.+.++.|.+   ....|+|.
T Consensus        19 ~~~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlpgLL~~~~~N~~r~~~~~~~lFE   98 (207)
T d1jjcb5          19 RKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFE   98 (207)
T ss_dssp             HHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSGGGSEECSCSHHHHHHHHHHHHHHSCCSEEEEEE
T ss_pred             HHHHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCCCCcEEEeCCcchhhhhhhhhcchHHHHHHHhCcccccccceeeEe
Confidence            4567788888889999999999977665432  12346788887 455668999999999999886521   23479999


Q ss_pred             ecCccccCCCCCCccceEEEEEEEEEcCCC------CcccHH-HHHHHHHHHHHhCCCCCcEE
Q psy7309         391 IDRVFRERRVLGFHPRELYECAFDIVTNTP------GVLTMG-SLRRCLMGSFRRFNYGNISF  446 (454)
Q Consensus       391 ~g~vfR~~~~~~g~~rE~~Q~g~eiig~~~------~~~~d~-e~~~~~~~~l~~~~~~~~~i  446 (454)
                      +|+||+...       |-..+++- .|...      ....|. ++-.++..++..+|+. +.+
T Consensus        99 iG~vf~~~~-------~~~~~~~~-~g~~~~~~~~~~~~~df~~~Kg~v~~ll~~lg~~-~~~  152 (207)
T d1jjcb5          99 VGRVFRERE-------ETHLAGLL-FGEGVGLPWAKERLSGYFLLKGYLEALFARLGLA-FRV  152 (207)
T ss_dssp             EEEEESSSE-------EEEEEEEE-EESCBSCTTSSCCBCHHHHHHHHHHHHHHHHTCC-EEE
T ss_pred             eeeeeeccc-------cccchhhh-hhcccccccccccchhHHHHHHHHHHHHHhhhcc-ccc
Confidence            999998532       22334433 33210      112344 3555666677888873 444

>d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Glycyl-tRNA synthetase (GlyRS)
species: Thermus thermophilus [TaxId: 274]

Probab=93.75  E-value=0.067  Score=50.53  Aligned_cols=93  Identities=11%  Similarity=0.082  Sum_probs=64.5

Q ss_pred             ccEEEE-cCC---CCeEeeCCCCCH----HHHHHHHHcCCCCceeeEeecCccccCC-CCC--CccceEEEEEEEEEcCC
Q psy7309         351 TTASVM-TRG---GSIVTLPHDLRI----PFARYLAQNGSIVSMKRYCIDRVFRERR-VLG--FHPRELYECAFDIVTNT  419 (454)
Q Consensus       351 ~~~~~~-d~~---G~~~~Lr~d~T~----p~aR~~a~~~~~~~~k~~y~g~vfR~~~-~~~--g~~rE~~Q~g~eiig~~  419 (454)
                      -||+.. ...   +...-|||+..-    .|.+.+-.+....|+=..++|++||.+= |..  -|.|||.|+-+|++-.+
T Consensus       167 LMF~T~iGp~~~~~~~~yLRPETAQGiFvnF~~~l~~~r~KlPFGiAQIGk~FRNEIsPr~~l~R~REF~q~EiE~Fv~P  246 (394)
T d1atia2         167 MMFQDLRGPRGGRGLLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEITPRNFIFRVREFEQMEIEYFVRP  246 (394)
T ss_dssp             CBEEEECSSCCCGGGEEEECSSSHHHHHHTHHHHHHHHTCCSSEEEEEEEEEEBCCSSCCTGGGSCSEEEEEEEEEEECG
T ss_pred             hhccccccccccccceeEEChhhhhHHHHHHHHHHHHcccCCCceeeeeccccccccCcccCCcccccceeeeeEEEEeC
Confidence            355544 332   347889999764    4455443333379999999999999843 334  48899999999999765


Q ss_pred             C-CcccHHHHHHHHHHHHHhCCCCC
Q psy7309         420 P-GVLTMGSLRRCLMGSFRRFNYGN  443 (454)
Q Consensus       420 ~-~~~~d~e~~~~~~~~l~~~~~~~  443 (454)
                      . ....-+.-+.-....+.++|+..
T Consensus       247 ~~~~~~~~yw~~~~~~f~~~lGi~~  271 (394)
T d1atia2         247 GEDEYWHRYWVEERLKWWQEMGLSR  271 (394)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTTCCG
T ss_pred             CcchHHHHHHHHHHHHHHHHhcCCc
Confidence            2 22344455667788899999954

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.24  E-value=0.047  Score=48.30  Aligned_cols=29  Identities=28%  Similarity=0.296  Sum_probs=25.2

Q ss_pred             CCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          22 GIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        22 giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .++|+|+.|.|||++.++.+-|+||+.+.
T Consensus       184 ~l~HgD~~~~Nil~~~~~~~~lIDwe~a~  212 (263)
T d1j7la_         184 VFSHGDLGDSNIFVKDGKVSGFIDLGRSG  212 (263)
T ss_dssp             EEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred             EEEEeeccCcceeecCCceEEEeechhcc
Confidence            48999999999999976666799999876

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=90.02  E-value=0.044  Score=48.23  Aligned_cols=29  Identities=21%  Similarity=0.161  Sum_probs=25.4

Q ss_pred             CCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          22 GIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        22 giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .+||+|+.|.|||++.++.+-|+||+.+.
T Consensus       176 ~liHgD~~~~Nvl~~~~~~~~iID~~~~~  204 (255)
T d1nd4a_         176 VVTHGDACLPNIMVENGRFSGFIDCGRLG  204 (255)
T ss_dssp             EEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred             eEEeCCCCCcceEEeCCceEEEEEchhcc
Confidence            48999999999999976667899999875

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=88.76  E-value=0.11  Score=47.73  Aligned_cols=28  Identities=21%  Similarity=0.060  Sum_probs=23.2

Q ss_pred             cCCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          21 QGIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        21 ~giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .++||+|+.|.|||++. + ..++||+-++
T Consensus       192 ~~liHgDlh~~NvL~~~-~-~~~IDFdd~~  219 (325)
T d1zyla1         192 VLRLHGDCHAGNILWRD-G-PMFVDLDDAR  219 (325)
T ss_dssp             CEECCSSCSGGGEEESS-S-EEECCCTTCC
T ss_pred             ceeecCCCCcccEEEeC-C-ceEEechhcc
Confidence            36899999999999973 3 4589999775

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=86.54  E-value=0.12  Score=48.94  Aligned_cols=28  Identities=32%  Similarity=0.366  Sum_probs=24.9

Q ss_pred             CCcccCCCCCcEEEccCCCeEEecccchh
Q psy7309          22 GIIHRDLKPVNIFIDYEDHVKIGDFGLAT   50 (454)
Q Consensus        22 giiHrDLKp~NILl~~~~~vKL~DFGla~   50 (454)
                      .++|+|++|.|||++.+ .++|+||..|.
T Consensus       224 ~LiHGDl~~gNIlv~~~-~~~vID~E~a~  251 (392)
T d2pula1         224 TLIHGDLHTGSIFASEH-ETKVIDPEFAF  251 (392)
T ss_dssp             EEECSCCCGGGEEECSS-CEEECCCTTCE
T ss_pred             ceeccCCcCCceeEcCC-ceEEechhhcc
Confidence            69999999999999865 48999998876