Psyllid ID: psy7490

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
MSTLQELEDESHTWIGSDRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASIKSGFQ
ccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccEEEcccEEEEEcccEEEEEEcHHHHHHHcccHHHHHHHHHHHHHccEEEccccEEEEEEEEcHHHHHHHHHHHHHccEEcccccccccEEEEcccEEEEEEccccccccccccccccEEcccEEEEEEEEEcccccccccccccc
cccHHHHcccccccccccccccHHHHHHHHHHHHHHHcHHHHcccccEEEccccEEEEEccccEEEHcHHHHHHHHcccHHHHHHHHHHHHccccccccccEEEEEccccHHHHHHHHHHHHHHHHEcccccccccEEEcccEEEEEEEccccccccHHHHHcccEEEEEEEEEEEcccccccEEEEEccccc
mstlqeledeshtwigsdrdyTYEELLSRVFEIMReknpdmvagkkqkfvmrppqvvrigtkktsfANFTEICKTLHRLPKHLLDFLLAElgtsgsvdgnsqlIIKGRFQQKQIENVLRRYIKEYVtchtcrspdtilqKDTRLFFLqcetcgsrcsvasiksgfqkdTRLFFLQcetcgsrcsvasiksgfq
mstlqeledeshtwigsdrdytYEELLSRVFEIMREKnpdmvagkkqkfvmrppqvvrigtkktsfANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVtchtcrspdtilQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCEtcgsrcsvasiksgfq
MSTLQELEDESHTWIGSDRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASIKSGFQ
************TWIGSDRDYTYEELLSRVFEIMRE*****VAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVA*******
*******************DYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVA**********************************
***********HTWIGSDRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASIKSGFQ
*************WIGSDRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASIK****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSTLQELEDESHTWIGSDRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDTRLFFLQCETCGSRCSVASIKSGFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query193 2.2.26 [Sep-21-2011]
P41375312 Eukaryotic translation in yes N/A 0.823 0.509 0.867 2e-81
Q99L45331 Eukaryotic translation in yes N/A 0.797 0.465 0.870 4e-80
Q5E9D0333 Eukaryotic translation in yes N/A 0.797 0.462 0.870 6e-80
P41035333 Eukaryotic translation in yes N/A 0.797 0.462 0.870 8e-80
P20042333 Eukaryotic translation in yes N/A 0.797 0.462 0.870 1e-79
Q5R4T9333 Eukaryotic translation in yes N/A 0.797 0.462 0.863 2e-79
O24473270 Eukaryotic translation in N/A N/A 0.792 0.566 0.642 1e-57
P55871271 Eukaryotic translation in N/A N/A 0.818 0.583 0.635 3e-57
Q21230250 Eukaryotic translation in yes N/A 0.813 0.628 0.617 2e-55
Q41969268 Eukaryotic translation in yes N/A 0.792 0.570 0.616 3e-55
>sp|P41375|IF2B_DROME Eukaryotic translation initiation factor 2 subunit 2 OS=Drosophila melanogaster GN=eIF-2beta PE=1 SV=1 Back     alignment and function desciption
 Score =  301 bits (770), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 138/159 (86%), Positives = 148/159 (93%)

Query: 8   EDESHTWIGSDRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFA 67
           ED S TW GSDRDYTY+ELL RVFEI+ +KNPDM AG+K KFVMRPPQV+R+GTKKTSFA
Sbjct: 140 EDNSSTWFGSDRDYTYDELLKRVFEIILDKNPDMAAGRKPKFVMRPPQVLRVGTKKTSFA 199

Query: 68  NFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVT 127
           NF +I KTLHRLPKHLLDFLLAELGTSGS+DGN QLIIKGRFQ KQIENVLRRYIKEYVT
Sbjct: 200 NFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLIIKGRFQPKQIENVLRRYIKEYVT 259

Query: 128 CHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQ 166
           CHTCRSP+TILQKDTRLFFLQCE+CGSRCSVASIKSGFQ
Sbjct: 260 CHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGFQ 298
eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This preinitiation complex mediates ribosomal recognition of a start codon during the scanning process of the leader region.
Drosophila melanogaster (taxid: 7227)
>sp|Q99L45|IF2B_MOUSE Eukaryotic translation initiation factor 2 subunit 2 OS=Mus musculus GN=Eif2s2 PE=1 SV=1 Back     alignment and function description
>sp|Q5E9D0|IF2B_BOVIN Eukaryotic translation initiation factor 2 subunit 2 OS=Bos taurus GN=EIF2S2 PE=2 SV=1 Back     alignment and function description
>sp|P41035|IF2B_RABIT Eukaryotic translation initiation factor 2 subunit 2 OS=Oryctolagus cuniculus GN=EIF2S2 PE=1 SV=1 Back     alignment and function description
>sp|P20042|IF2B_HUMAN Eukaryotic translation initiation factor 2 subunit 2 OS=Homo sapiens GN=EIF2S2 PE=1 SV=2 Back     alignment and function description
>sp|Q5R4T9|IF2B_PONAB Eukaryotic translation initiation factor 2 subunit 2 OS=Pongo abelii GN=EIF2S2 PE=2 SV=1 Back     alignment and function description
>sp|O24473|IF2B_WHEAT Eukaryotic translation initiation factor 2 subunit beta OS=Triticum aestivum PE=1 SV=1 Back     alignment and function description
>sp|P55871|IF2B_MALDO Eukaryotic translation initiation factor 2 subunit beta OS=Malus domestica PE=2 SV=2 Back     alignment and function description
>sp|Q21230|IF2B_CAEEL Eukaryotic translation initiation factor 2 subunit 2 OS=Caenorhabditis elegans GN=K04G2.1 PE=3 SV=4 Back     alignment and function description
>sp|Q41969|IF2B_ARATH Eukaryotic translation initiation factor 2 subunit beta OS=Arabidopsis thaliana GN=EMB1401 PE=2 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
193647951 318 PREDICTED: eukaryotic translation initia 0.813 0.493 0.968 2e-87
380029420 315 PREDICTED: eukaryotic translation initia 0.844 0.517 0.920 1e-86
328793438 313 PREDICTED: eukaryotic translation initia 0.844 0.520 0.920 1e-86
350424155 316 PREDICTED: eukaryotic translation initia 0.844 0.515 0.920 2e-86
340722775 315 PREDICTED: LOW QUALITY PROTEIN: eukaryot 0.844 0.517 0.920 2e-86
380029422 317 PREDICTED: eukaryotic translation initia 0.839 0.511 0.932 5e-86
239789408185 ACYPI004549 [Acyrthosiphon pisum] 0.823 0.859 0.955 5e-86
289577258 313 eukaryotic translation initiation factor 0.818 0.504 0.930 2e-85
307207699 317 Eukaryotic translation initiation factor 0.839 0.511 0.904 2e-85
383857281 318 PREDICTED: eukaryotic translation initia 0.839 0.509 0.919 2e-85
>gi|193647951|ref|XP_001943223.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  326 bits (836), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 152/157 (96%), Positives = 155/157 (98%)

Query: 10  ESHTWIGSDRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANF 69
           ESHTW GSDRDYTY+ELL+RVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANF
Sbjct: 148 ESHTWFGSDRDYTYDELLTRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANF 207

Query: 70  TEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCH 129
           TEICKTLHR PKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCH
Sbjct: 208 TEICKTLHRQPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCH 267

Query: 130 TCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQ 166
           TCRSP+TILQKDTRLFFLQCETCGSRCSVASIKSGFQ
Sbjct: 268 TCRSPETILQKDTRLFFLQCETCGSRCSVASIKSGFQ 304

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380029420|ref|XP_003698371.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like isoform 1 [Apis florea] Back     alignment and taxonomy information
>gi|328793438|ref|XP_003251878.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like [Apis mellifera] Back     alignment and taxonomy information
>gi|350424155|ref|XP_003493705.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340722775|ref|XP_003399777.1| PREDICTED: LOW QUALITY PROTEIN: eukaryotic translation initiation factor 2 subunit 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|380029422|ref|XP_003698372.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like isoform 2 [Apis florea] Back     alignment and taxonomy information
>gi|239789408|dbj|BAH71330.1| ACYPI004549 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|289577258|ref|NP_001166186.1| eukaryotic translation initiation factor 2 subunit 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307207699|gb|EFN85336.1| Eukaryotic translation initiation factor 2 subunit 2 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|383857281|ref|XP_003704133.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 2-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
FB|FBgn0004926312 eIF-2beta "Eukaryotic initiati 0.839 0.519 0.858 1.7e-73
UNIPROTKB|Q5E9D0333 EIF2S2 "Eukaryotic translation 0.808 0.468 0.865 4.1e-72
UNIPROTKB|F1PZ47333 EIF2S2 "Uncharacterized protei 0.808 0.468 0.865 4.1e-72
UNIPROTKB|P20042333 EIF2S2 "Eukaryotic translation 0.808 0.468 0.865 4.1e-72
UNIPROTKB|F1S4Y8328 EIF2S2 "Uncharacterized protei 0.808 0.475 0.865 4.1e-72
UNIPROTKB|P41035333 EIF2S2 "Eukaryotic translation 0.808 0.468 0.865 4.1e-72
UNIPROTKB|Q4R5G5333 Q4R5G5 "Macaca fascicularis br 0.808 0.468 0.865 4.1e-72
MGI|MGI:1914454331 Eif2s2 "eukaryotic translation 0.808 0.471 0.865 4.1e-72
RGD|735192333 Eif2s2 "eukaryotic translation 0.808 0.468 0.865 4.1e-72
UNIPROTKB|E1BT82329 EIF2S2 "Uncharacterized protei 0.808 0.474 0.858 8.6e-72
FB|FBgn0004926 eIF-2beta "Eukaryotic initiation factor 2beta" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 742 (266.3 bits), Expect = 1.7e-73, P = 1.7e-73
 Identities = 139/162 (85%), Positives = 149/162 (91%)

Query:     8 EDESHTWIGSDRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFA 67
             ED S TW GSDRDYTY+ELL RVFEI+ +KNPDM AG+K KFVMRPPQV+R+GTKKTSFA
Sbjct:   140 EDNSSTWFGSDRDYTYDELLKRVFEIILDKNPDMAAGRKPKFVMRPPQVLRVGTKKTSFA 199

Query:    68 NFTEICKTLHRLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVT 127
             NF +I KTLHRLPKHLLDFLLAELGTSGS+DGN QLIIKGRFQ KQIENVLRRYIKEYVT
Sbjct:   200 NFMDIAKTLHRLPKHLLDFLLAELGTSGSMDGNQQLIIKGRFQPKQIENVLRRYIKEYVT 259

Query:   128 CHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSGFQKDT 169
             CHTCRSP+TILQKDTRLFFLQCE+CGSRCSVASIKSGFQ  T
Sbjct:   260 CHTCRSPETILQKDTRLFFLQCESCGSRCSVASIKSGFQAVT 301
GO:0005525 "GTP binding" evidence=NAS
GO:0005850 "eukaryotic translation initiation factor 2 complex" evidence=ISS;NAS
GO:0001677 "formation of translation initiation ternary complex" evidence=NAS
GO:0000049 "tRNA binding" evidence=NAS
GO:0003743 "translation initiation factor activity" evidence=IEA;ISS;NAS
GO:0005829 "cytosol" evidence=ISS
GO:0006413 "translational initiation" evidence=IEA;ISS
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0016199 "axon midline choice point recognition" evidence=IMP
GO:0005875 "microtubule associated complex" evidence=IDA
UNIPROTKB|Q5E9D0 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PZ47 EIF2S2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P20042 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4Y8 EIF2S2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P41035 EIF2S2 "Eukaryotic translation initiation factor 2 subunit 2" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R5G5 Q4R5G5 "Macaca fascicularis brain cDNA clone: QorA-11002, similar to human eukaryotic translation initiation factor 2, subunit 2beta, 38kDa (EIF2S2), mRNA, RefSeq: NM_003908.2" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
MGI|MGI:1914454 Eif2s2 "eukaryotic translation initiation factor 2, subunit 2 (beta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|735192 Eif2s2 "eukaryotic translation initiation factor 2, subunit 2 beta" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BT82 EIF2S2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P41035IF2B_RABITNo assigned EC number0.87010.79790.4624yesN/A
Q8TU91IF2B_METACNo assigned EC number0.38800.65800.6287yesN/A
A0B5K5IF2B_METTPNo assigned EC number0.34480.70980.6586yesN/A
P09064IF2B_YEASTNo assigned EC number0.52830.80310.5438yesN/A
Q97W59IF2B_SULSONo assigned EC number0.31290.72021.0yesN/A
O27797IF2B_METTHNo assigned EC number0.33090.68390.9777yesN/A
A3CXJ3IF2B_METMJNo assigned EC number0.35760.67350.6341yesN/A
P56329IF2B_SCHPONo assigned EC number0.63220.79270.4766yesN/A
Q4JA57IF2B_SULACNo assigned EC number0.34530.68910.9432yesN/A
A6VIT7IF2B_METM7No assigned EC number0.31910.69430.9710yesN/A
Q9UYR6IF2B_PYRABNo assigned EC number0.39710.69940.9642yesN/A
Q41969IF2B_ARATHNo assigned EC number0.61680.79270.5708yesN/A
A6URT3IF2B_METVSNo assigned EC number0.31200.69430.9710yesN/A
Q5E9D0IF2B_BOVINNo assigned EC number0.87010.79790.4624yesN/A
Q5R4T9IF2B_PONABNo assigned EC number0.86360.79790.4624yesN/A
Q21230IF2B_CAEELNo assigned EC number0.61720.81340.628yesN/A
C5A2A8IF2B_THEGJNo assigned EC number0.39850.68390.9295yesN/A
Q99L45IF2B_MOUSENo assigned EC number0.87010.79790.4652yesN/A
B0R583IF2B_HALS3No assigned EC number0.38970.67350.9848yesN/A
Q9HQ97IF2B_HALSANo assigned EC number0.38970.67350.9848yesN/A
C3N120IF2B_SULIANo assigned EC number0.31290.72021.0yesN/A
Q8PWV1IF2B_METMANo assigned EC number0.37680.67870.6485yesN/A
O58312IF2B_PYRHONo assigned EC number0.40420.69940.9642yesN/A
Q8U3I5IF2B_PYRFUNo assigned EC number0.39710.69940.9642yesN/A
P41375IF2B_DROMENo assigned EC number0.86790.82380.5096yesN/A
Q6M0H3IF2B_METMPNo assigned EC number0.31910.69430.9710yesN/A
C3MK63IF2B_SULILNo assigned EC number0.31290.72021.0yesN/A
A7I5J0IF2B_METB6No assigned EC number0.37120.64760.6127yesN/A
Q974Z6IF2B_SULTONo assigned EC number0.32390.66320.9208yesN/A
A4YEI1IF2B_METS5No assigned EC number0.33100.72020.9928yesN/A
Q5V323IF2B_HALMANo assigned EC number0.31380.67870.9776yesN/A
A1RX59IF2B_THEPDNo assigned EC number0.32840.68390.9361yesN/A
O27958IF2B_ARCFUNo assigned EC number0.35710.69430.9781yesN/A
C3MU32IF2B_SULIMNo assigned EC number0.31290.72021.0yesN/A
A3DNI8IF2B_STAMFNo assigned EC number0.33090.70460.9577yesN/A
Q2NHD9IF2B_METSTNo assigned EC number0.35970.68390.9295yesN/A
C3N8N2IF2B_SULIYNo assigned EC number0.31290.72021.0yesN/A
C3NMA3IF2B_SULINNo assigned EC number0.31290.72021.0yesN/A
Q8TWR5IF2B_METKANo assigned EC number0.40550.70460.9855yesN/A
Q54T27IF2B_DICDINo assigned EC number0.52280.78230.4763yesN/A
P20042IF2B_HUMANNo assigned EC number0.87010.79790.4624yesN/A
Q5JIT0IF2B_PYRKONo assigned EC number0.36170.69940.9507yesN/A
C4KK87IF2B_SULIKNo assigned EC number0.31290.72021.0yesN/A
A9A7T1IF2B_METM6No assigned EC number0.31910.69430.9710yesN/A
A5UKI8IF2B_METS3No assigned EC number0.34530.68390.9777yesN/A
Q3INQ4IF2B_NATPDNo assigned EC number0.34780.68390.9850yesN/A
A2SSW2IF2B_METLZNo assigned EC number0.37310.65800.6225yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
pfam01873125 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 5e-64
smart00653110 smart00653, eIF2B_5, domain present in translation 3e-60
COG1601151 COG1601, GCD7, Translation initiation factor 2, be 5e-48
PRK03988138 PRK03988, PRK03988, translation initiation factor 2e-43
PRK12336201 PRK12336, PRK12336, translation initiation factor 5e-33
TIGR00311133 TIGR00311, aIF-2beta, translation initiation facto 6e-26
>gnl|CDD|216754 pfam01873, eIF-5_eIF-2B, Domain found in IF2B/IF5 Back     alignment and domain information 
 Score =  193 bits (492), Expect = 5e-64
 Identities = 68/123 (55%), Positives = 87/123 (70%)

Query: 35  REKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTS 94
             +NPD VAG K +F M PPQV   G  KT   NF++I K L+R P+HLL +LLAELGT 
Sbjct: 3   FNQNPDRVAGDKFRFEMPPPQVKIEGKIKTIIVNFSDIAKALNRPPEHLLKYLLAELGTQ 62

Query: 95  GSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGS 154
           GS+DG  +LI+ GRF  K++++VL  YIKEYV CH C+SPDT L K+ RL FL+C+ CG+
Sbjct: 63  GSIDGKGRLIVNGRFTPKKLQDVLDDYIKEYVLCHECKSPDTELIKENRLIFLKCKACGA 122

Query: 155 RCS 157
           R  
Sbjct: 123 RRP 125

This family includes the N terminus of eIF-5, and the C terminus of eIF-2 beta. This region corresponds to the whole of the archaebacterial eIF-2 beta homologue. The region contains a putative zinc binding C4 finger. Length = 125
>gnl|CDD|214764 smart00653, eIF2B_5, domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information
>gnl|CDD|224517 COG1601, GCD7, Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235189 PRK03988, PRK03988, translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>gnl|CDD|183451 PRK12336, PRK12336, translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|129411 TIGR00311, aIF-2beta, translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 193
PRK03988138 translation initiation factor IF-2 subunit beta; V 100.0
KOG2768|consensus231 100.0
TIGR00311133 aIF-2beta translation initiation factor aIF-2, bet 100.0
PRK12336201 translation initiation factor IF-2 subunit beta; P 100.0
smart00653110 eIF2B_5 domain present in translation initiation f 100.0
PF01873125 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: 100.0
COG1601151 GCD7 Translation initiation factor 2, beta subunit 100.0
KOG2767|consensus 400 100.0
KOG2768|consensus231 98.64
PRK03988138 translation initiation factor IF-2 subunit beta; V 98.62
TIGR00311133 aIF-2beta translation initiation factor aIF-2, bet 98.61
PRK12336201 translation initiation factor IF-2 subunit beta; P 98.45
COG1601151 GCD7 Translation initiation factor 2, beta subunit 98.01
smart00653110 eIF2B_5 domain present in translation initiation f 98.0
PF01873125 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: 97.94
TIGR0244359 conserved hypothetical metal-binding protein. Memb 94.36
PF0952671 DUF2387: Probable metal-binding protein (DUF2387); 94.33
PF0125383 SUI1: Translation initiation factor SUI1; InterPro 93.97
COG1326 201 Uncharacterized archaeal Zn-finger protein [Genera 93.91
PF1267749 DUF3797: Domain of unknown function (DUF3797); Int 93.81
PF1435461 Lar_restr_allev: Restriction alleviation protein L 92.79
PF04216290 FdhE: Protein involved in formate dehydrogenase fo 92.7
PRK00464154 nrdR transcriptional regulator NrdR; Validated 91.86
PRK0971064 lar restriction alleviation and modification prote 91.76
PRK03564309 formate dehydrogenase accessory protein FdhE; Prov 91.76
TIGR01562305 FdhE formate dehydrogenase accessory protein FdhE. 91.4
cd0047477 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac 91.35
COG199789 RPL43A Ribosomal protein L37AE/L43A [Translation, 89.08
PF0109639 TFIIS_C: Transcription factor S-II (TFIIS); InterP 88.97
PRK0093999 translation initiation factor Sui1; Reviewed 88.81
PF1371937 zinc_ribbon_5: zinc-ribbon domain 88.62
smart0044040 ZnF_C2C2 C2C2 Zinc finger. Nucleic-acid-binding mo 88.03
PF0827143 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 87.3
TIGR01158101 SUI1_rel translation initation factor SUI1, putati 87.07
TIGR0365553 anti_R_Lar restriction alleviation protein, Lar fa 86.87
COG1198 730 PriA Primosomal protein N' (replication factor Y) 86.59
COG3058308 FdhE Uncharacterized protein involved in formate d 86.27
COG0023104 SUI1 Translation initiation factor 1 (eIF-1/SUI1) 85.27
TIGR01159173 DRP1 density-regulated protein DRP1. This protein 84.94
PF1289884 Stc1: Stc1 domain; InterPro: IPR024630 The domain 83.77
PF0476054 IF2_N: Translation initiation factor IF-2, N-termi 82.91
COG2956389 Predicted N-acetylglucosaminyl transferase [Carboh 82.09
PRK0041559 rps27e 30S ribosomal protein S27e; Reviewed 81.86
TIGR01160110 SUI1_MOF2 translation initiation factor SUI1, euka 81.76
cd0476249 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain 81.59
COG205167 RPS27A Ribosomal protein S27E [Translation, riboso 80.9
PF06573112 Churchill: Churchill protein; InterPro: IPR009508 80.41
>PRK03988 translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information 
Probab=100.00  E-value=2.9e-54  Score=345.12  Aligned_cols=135  Identities=44%  Similarity=0.838  Sum_probs=128.2

Q ss_pred             CccHHHHHHHHHHHHHhcCCCcccCcceeeecCCCeEEEecCeeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecC
Q psy7490          20 DYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDG   99 (193)
Q Consensus        20 ~~~Y~~LL~R~~~~L~~~~p~~~~~~~~R~~mP~p~v~~~Gg~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~   99 (193)
                      +|+|++||+|||+.|    |+.. ++.+||+||+|+|.++| +||+|+||.|||++|||+|+||+|||++||||+|+++ 
T Consensus         4 ~~~Y~~lL~R~~~~l----p~~~-~~~~R~~~p~~~v~~eG-~kTvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i~-   76 (138)
T PRK03988          4 YYDYEELLDRAYEKL----PEKV-FKESRFEVPKPDVRIEG-NRTIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNIE-   76 (138)
T ss_pred             ccCHHHHHHHHHHHC----cccc-CCCcceeCCCCeEEEEc-CcEEEecHHHHHHHHCCCHHHHHHHHHHHhCCceeec-
Confidence            589999999999998    8875 46789999999999997 5899999999999999999999999999999999995 


Q ss_pred             CCeEEEEeeccHHHHHHHHHHHhhhccccCCCCCCcceeEecCceeeccccccccccccccc
Q psy7490         100 NSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASI  161 (193)
Q Consensus       100 ~~~lii~G~~~~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~  161 (193)
                      +|+++|+|+|++++||++|++||++||+|++|+||||.|+|++|+++++|+|||+.+||+++
T Consensus        77 ~~~lii~G~~~~~~i~~~L~~yI~~yVlC~~C~spdT~l~k~~r~~~l~C~ACGa~~~V~~~  138 (138)
T PRK03988         77 GGRLILQGKFSPRVINEKIDRYVKEYVICPECGSPDTKLIKEGRIWVLKCEACGAETPVKPL  138 (138)
T ss_pred             CCEEEEEEeeCHHHHHHHHHHHHHhcEECCCCCCCCcEEEEcCCeEEEEcccCCCCCcCCcC
Confidence            79999999999999999999999999999999999999999999999999999999999764

>KOG2768|consensus Back     alignment and domain information
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology [] Back     alignment and domain information
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2767|consensus Back     alignment and domain information
>KOG2768|consensus Back     alignment and domain information
>PRK03988 translation initiation factor IF-2 subunit beta; Validated Back     alignment and domain information
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative Back     alignment and domain information
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional Back     alignment and domain information
>COG1601 GCD7 Translation initiation factor 2, beta subunit (eIF-2beta)/eIF-5 N-terminal domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5 Back     alignment and domain information
>PF01873 eIF-5_eIF-2B: Domain found in IF2B/IF5; InterPro: IPR002735 The beta subunit of archaeal and eukaryotic translation initiation factor 2 (IF2beta) and the N-terminal domain of translation initiation factor 5 (IF5) show significant sequence homology [] Back     alignment and domain information
>TIGR02443 conserved hypothetical metal-binding protein Back     alignment and domain information
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC Back     alignment and domain information
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation [] Back     alignment and domain information
>COG1326 Uncharacterized archaeal Zn-finger protein [General function prediction only] Back     alignment and domain information
>PF12677 DUF3797: Domain of unknown function (DUF3797); InterPro: IPR024256 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF14354 Lar_restr_allev: Restriction alleviation protein Lar Back     alignment and domain information
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex [] Back     alignment and domain information
>PRK00464 nrdR transcriptional regulator NrdR; Validated Back     alignment and domain information
>PRK09710 lar restriction alleviation and modification protein; Reviewed Back     alignment and domain information
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional Back     alignment and domain information
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE Back     alignment and domain information
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation Back     alignment and domain information
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01096 TFIIS_C: Transcription factor S-II (TFIIS); InterPro: IPR001222 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PRK00939 translation initiation factor Sui1; Reviewed Back     alignment and domain information
>PF13719 zinc_ribbon_5: zinc-ribbon domain Back     alignment and domain information
>smart00440 ZnF_C2C2 C2C2 Zinc finger Back     alignment and domain information
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic Back     alignment and domain information
>TIGR03655 anti_R_Lar restriction alleviation protein, Lar family Back     alignment and domain information
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01159 DRP1 density-regulated protein DRP1 Back     alignment and domain information
>PF12898 Stc1: Stc1 domain; InterPro: IPR024630 The domain contains 8 conserved cysteines that may bind to zinc Back     alignment and domain information
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2 Back     alignment and domain information
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK00415 rps27e 30S ribosomal protein S27e; Reviewed Back     alignment and domain information
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic Back     alignment and domain information
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins Back     alignment and domain information
>COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF06573 Churchill: Churchill protein; InterPro: IPR009508 This family consists of several eukaryotic Churchill proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
2d74_B148 Crystal Structure Of Translation Initiation Factor 6e-24
2nxu_A146 Atomic Structure Of Translation Initiation Factor A 1e-18
2qmu_C138 Structure Of An Archaeal Heterotrimeric Initiation 1e-18
1nee_A138 Structure Of Archaeal Translation Factor Aif2beta F 2e-18
3cw2_K139 Crystal Structure Of The Intact Archaeal Translatio 2e-18
2e9h_A157 Solution Structure Of The Eif-5_eif-2b Domain From 2e-07
2g2k_A170 Nmr Structure Of An N-Terminal Fragment Of The Euka 2e-07
>pdb|2D74|B Chain B, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 148 Back     alignment and structure 
Iteration: 1

 Score =  107 bits (266), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 56/138 (40%), Positives = 84/138 (60%), Gaps = 6/138 (4%)
Query: 21  YTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLP 80
           Y YE+LL + ++ +    P+ V   K +F + P  +V I   KT   NF +I   L+R P
Sbjct: 6   YDYEKLLEKAYQEL----PENVKHHKSRFEV-PGALVTIEGNKTIIENFKDIADALNRDP 60
Query: 81  KHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQK 140
           +HLL FLL E+ T+G+++G  +++++GRF    I N L++YIKEYV C  C SPDT + K
Sbjct: 61  QHLLKFLLREIATAGTLEGR-RVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIK 119
Query: 141 DTRLFFLQCETCGSRCSV 158
             R  FL+CE CG+   +
Sbjct: 120 RDRFHFLKCEACGAETPI 137
>pdb|2NXU|A Chain A, Atomic Structure Of Translation Initiation Factor Aif2 Beta-Subunit From Archaebacteria Sulfolobus Solfataricus: High Resolution Nmr In Solution Length = 146 Back     alignment and structure
>pdb|2QMU|C Chain C, Structure Of An Archaeal Heterotrimeric Initiation Factor 2 Reveals A Nucleotide State Between The Gtp And The Gdp States Length = 138 Back     alignment and structure
>pdb|1NEE|A Chain A, Structure Of Archaeal Translation Factor Aif2beta From Methanobacterium Thermoautrophicum Length = 138 Back     alignment and structure
>pdb|3CW2|K Chain K, Crystal Structure Of The Intact Archaeal Translation Initiation Factor 2 From Sulfolobus Solfataricus . Length = 139 Back     alignment and structure
>pdb|2E9H|A Chain A, Solution Structure Of The Eif-5_eif-2b Domain From Human Eukaryotic Translation Initiation Factor 5 Length = 157 Back     alignment and structure
>pdb|2G2K|A Chain A, Nmr Structure Of An N-Terminal Fragment Of The Eukaryotic Initiation Factor 5 (Eif5) Length = 170 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 1e-59
2d74_B148 Translation initiation factor 2 beta subunit; prot 1e-56
1nee_A138 EIF-2-beta, probable translation initiation factor 7e-54
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 4e-44
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 4e-42
1k8b_A52 EIF-2-beta, probable translation initiation factor 1e-20
1k81_A36 EIF-2-beta, probable translation initiation factor 6e-10
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Length = 139 Back     alignment and structure
 Score =  182 bits (462), Expect = 1e-59
 Identities = 44/144 (30%), Positives = 76/144 (52%), Gaps = 6/144 (4%)

Query: 18  DRDYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLH 77
             +  Y E+L R++  + EK       +K+     P  ++      T   NF E C  + 
Sbjct: 2   SSEKEYVEMLDRLYSKLPEKG------RKEGTQSLPNMIILNIGNTTIIRNFAEYCDRIR 55

Query: 78  RLPKHLLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTI 137
           R  K  + +LL EL   G+VD   +L+I+G+F  + I  ++ R++K YV C TC+S DTI
Sbjct: 56  REDKICMKYLLKELAAPGNVDDKGELVIQGKFSSQVINTLMERFLKAYVECSTCKSLDTI 115

Query: 138 LQKDTRLFFLQCETCGSRCSVASI 161
           L+K+ + +++ C  CG++  V  +
Sbjct: 116 LKKEKKSWYIVCLACGAQTPVKPL 139
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Length = 148 Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Length = 138 Back     alignment and structure
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 157 Back     alignment and structure
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Length = 170 Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Length = 52 Back     alignment and structure
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1 Length = 36 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
2d74_B148 Translation initiation factor 2 beta subunit; prot 100.0
1nee_A138 EIF-2-beta, probable translation initiation factor 100.0
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 100.0
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 100.0
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 100.0
1k8b_A52 EIF-2-beta, probable translation initiation factor 99.88
1k81_A36 EIF-2-beta, probable translation initiation factor 99.51
1k81_A36 EIF-2-beta, probable translation initiation factor 98.7
1nee_A138 EIF-2-beta, probable translation initiation factor 98.45
2d74_B148 Translation initiation factor 2 beta subunit; prot 98.35
3cw2_K139 Translation initiation factor 2 subunit beta; AIF2 98.29
2e9h_A157 EIF-5, eukaryotic translation initiation factor 5; 98.15
2g2k_A170 EIF-5, eukaryotic translation initiation factor 5; 98.09
2fiy_A309 Protein FDHE homolog; FDHE protein, structural gen 94.0
3a43_A139 HYPD, hydrogenase nickel incorporation protein HYP 89.68
2ogh_A108 Eukaryotic translation initiation factor EIF-1; al 88.51
2jrp_A81 Putative cytoplasmic protein; two-zinc binding pro 88.51
1pft_A50 TFIIB, PFTFIIBN; N-terminal domain, transcription 88.09
4h62_V31 Mediator of RNA polymerase II transcription subun; 87.29
1qyp_A57 RNA polymerase II; transcription, RPB9, Zn ribbon, 85.09
1dl6_A58 Transcription factor II B (TFIIB); zinc ribbon, ge 84.77
1tfi_A50 Transcriptional elongation factor SII; transcripti 84.34
2pk7_A69 Uncharacterized protein; NESG, PLR1, putative tetr 83.72
2xzm_F101 EIF1; ribosome, translation; 3.93A {Tetrahymena th 80.1
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Back     alignment and structure
Probab=100.00  E-value=6.2e-56  Score=357.12  Aligned_cols=139  Identities=39%  Similarity=0.762  Sum_probs=129.3

Q ss_pred             CccHHHHHHHHHHHHHhcCCCcccCcceeeecCCCeEEEecCeeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecC
Q psy7490          20 DYTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDG   99 (193)
Q Consensus        20 ~~~Y~~LL~R~~~~L~~~~p~~~~~~~~R~~mP~p~v~~~Gg~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~   99 (193)
                      .|+|++||+|||+.|    |+...++.+||+||+|++.++| +||+|+||.|||++|||+|+||+|||++||||+|++| 
T Consensus         5 ~~~Y~~LL~R~~~~l----p~~~~~~~~RykmP~~~v~~eG-kKTvi~Nf~dIa~~L~R~p~hv~ky~~~ELGt~g~id-   78 (148)
T 2d74_B            5 YYDYEKLLEKAYQEL----PENVKHHKSRFEVPGALVTIEG-NKTIIENFKDIADALNRDPQHLLKFLLREIATAGTLE-   78 (148)
T ss_dssp             TTCHHHHHHTTTSSS----CHHHHSSSCCCCCCCCCEEEET-TEEEESCHHHHHHHHTCCSHHHHHHHHHHSCCCEEEE-
T ss_pred             cccHHHHHHHHHHHC----ccccCCCCCceecCCCeEEEec-CeEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeec-
Confidence            478999999999998    8875246789999999999997 6999999999999999999999999999999999999 


Q ss_pred             CCeEEEEeeccHHHHHHHHHHHhhhccccCCCCCCcceeEecCceeecccccccccccccccccc
Q psy7490         100 NSQLIIKGRFQQKQIENVLRRYIKEYVTCHTCRSPDTILQKDTRLFFLQCETCGSRCSVASIKSG  164 (193)
Q Consensus       100 ~~~lii~G~~~~~~iq~~L~~yI~~YVlC~~C~sPdT~L~k~~rl~~l~C~aCGa~~~V~~~k~~  164 (193)
                      +|+|||||+|++++||++|++||++||+|++|+||||.|++++|+++++|+|||+.+||+++|..
T Consensus        79 ~~rlii~G~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~~V~~~k~~  143 (148)
T 2d74_B           79 GRRVVLQGRFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGAETPIQHLLEH  143 (148)
T ss_dssp             TTEEEESSCCCHHHHHHHHHHHHHHHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCCCCCCC----
T ss_pred             CCEEEEEeeeCHHHHHHHHHHHHHHEEECCCCCCcCcEEEEeCCEEEEEecCCCCCccccchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999998753
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Back     alignment and structure
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Back     alignment and structure
>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta subunit; N-terminal domain, AIF2 subunit beta; NMR {Methanocaldococcus jannaschii} SCOP: d.241.1.1 Back     alignment and structure
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1 Back     alignment and structure
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1 Back     alignment and structure
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1 Back     alignment and structure
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B* Back     alignment and structure
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C* Back     alignment and structure
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens} Back     alignment and structure
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1 Back     alignment and structure
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* Back     alignment and structure
>2ogh_A Eukaryotic translation initiation factor EIF-1; alpha-beta protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2} Back     alignment and structure
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 Back     alignment and structure
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae} Back     alignment and structure
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1 Back     alignment and structure
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A Back     alignment and structure
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1 Back     alignment and structure
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 Back     alignment and structure
>2xzm_F EIF1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_F Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 193
d1neea198 d.241.1.1 (A:1-98) Translation initiation factor 2 3e-38
d1k8ba_52 d.241.1.1 (A:) Translation initiation factor 2 bet 2e-19
d1neea237 g.59.1.1 (A:99-135) Zinc-binding domain of transla 9e-16
d1k81a_36 g.59.1.1 (A:) Zinc-binding domain of translation i 1e-14
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 98 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score =  124 bits (314), Expect = 3e-38
 Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 7/102 (6%)

Query: 23  YEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKH 82
           YE+LL R  + +    P  V   K +F +     V  G  +T   NF E+   L+R P+H
Sbjct: 4   YEKLLERAIDQL----PPEVFETK-RFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQH 57

Query: 83  LLDFLLAELGTSGSVDGNSQLIIKGRFQQKQIENVLRRYIKE 124
           LL FLL ELGT+G+++G  + I++G+F    I   +  Y+ +
Sbjct: 58  LLKFLLRELGTAGNLEGG-RAILQGKFTHFLINERIEDYVNK 98
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 52 Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 37 Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 36 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
d1neea198 Translation initiation factor 2 beta, aIF2beta, N- 100.0
d1k8ba_52 Translation initiation factor 2 beta, aIF2beta, N- 99.87
d1neea237 Zinc-binding domain of translation initiation fact 99.66
d1k81a_36 Zinc-binding domain of translation initiation fact 99.61
d1neea237 Zinc-binding domain of translation initiation fact 99.25
d1k81a_36 Zinc-binding domain of translation initiation fact 99.22
d2fiya1290 FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId 92.48
d1d0qa_102 Zinc-binding domain of DNA primase {Bacillus stear 89.42
d1dl6a_58 Transcription initiation factor TFIIB, N-terminal 89.35
d1pfta_50 Transcription initiation factor TFIIB, N-terminal 88.07
d1qypa_57 RBP9 subunit of RNA polymerase II {Archaeon Thermo 85.52
d1d1ra_83 YciH {Escherichia coli [TaxId: 562]} 84.06
d2if1a_126 Eukaryotic translation initiation factor eIF-1 (SU 83.86
d1tfia_50 Transcriptional factor SII, C-terminal domain {Hum 83.33
d1y0ja139 Erythroid transcription factor GATA-1 {Mouse (Mus 82.75
d2vuti142 Erythroid transcription factor GATA-1 {Emericella 81.85
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=3.5e-36  Score=225.41  Aligned_cols=97  Identities=34%  Similarity=0.638  Sum_probs=89.7

Q ss_pred             ccHHHHHHHHHHHHHhcCCCcccCcceeeecCCCeEEEecCeeeEEeccHHHHHHcCCChHHHHHHHHHhhcCceeecCC
Q psy7490          21 YTYEELLSRVFEIMREKNPDMVAGKKQKFVMRPPQVVRIGTKKTSFANFTEICKTLHRLPKHLLDFLLAELGTSGSVDGN  100 (193)
Q Consensus        21 ~~Y~~LL~R~~~~L~~~~p~~~~~~~~R~~mP~p~v~~~Gg~KTvi~Nf~dIak~L~R~p~hv~ky~~~ELgt~g~id~~  100 (193)
                      .+|++||+|||+.|    |+... +..||+||+|++.++| +||+|.||.|||++|||+|+||+|||++||||+|++| +
T Consensus         2 ~~Y~~LL~R~~~~l----~~~~~-~~~R~~mP~~~v~~eG-kkTii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~-~   74 (98)
T d1neea1           2 DDYEKLLERAIDQL----PPEVF-ETKRFEVPKAYSVIQG-NRTFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-G   74 (98)
T ss_dssp             CSSCCCCCSSSSSS----CTTSC-CCCCCCCSCCCCCEET-TEEEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-T
T ss_pred             ccHHHHHHHHHHHC----CcccC-CCcceecCCceEEEec-ceEEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe-C
Confidence            37999999999998    66543 5679999999998886 7999999999999999999999999999999999998 6


Q ss_pred             CeEEEEeeccHHHHHHHHHHHhhh
Q psy7490         101 SQLIIKGRFQQKQIENVLRRYIKE  124 (193)
Q Consensus       101 ~~lii~G~~~~~~iq~~L~~yI~~  124 (193)
                      |+++|+|+|++++|+++|++||++
T Consensus        75 ~~lii~G~~~~~~i~~~l~~yI~e   98 (98)
T d1neea1          75 GRAILQGKFTHFLINERIEDYVNK   98 (98)
T ss_dssp             TTEEEESSCSSSHHHHHHHHHHTH
T ss_pred             CEEEEEeeeCHHHHHHHHHHHhcC
Confidence            799999999999999999999985
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1k81a_ g.59.1.1 (A:) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2fiya1 e.59.1.1 (A:19-308) FdhE homolog PA4809 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1d0qa_ g.41.3.2 (A:) Zinc-binding domain of DNA primase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1qypa_ g.41.3.1 (A:) RBP9 subunit of RNA polymerase II {Archaeon Thermococcus celer [TaxId: 2264]} Back     information, alignment and structure
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tfia_ g.41.3.1 (A:) Transcriptional factor SII, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure