Psyllid ID: psy7683

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
Protein Sequence
MSSINTNIALAPSSSNSNNSTTSQIQSSMNSQKPVLFLLLGITCLALAPSSSNSNNSTTSQIQSSMNSQKPVSSVAPTALHEQQQALVFQAASTKVHPVQPITLMSTSQQLSSVKDNKNDRTESHTDSETLSPKPALPPKPAVPIKSTPPPPPRQSNISSVDTNEEEVKNTTQVVDAKGNLDMVKTGQLEQRIFNLNLRDSDNNKRLNGSIAISTQELDGSQPRRATLSIVTKDTSCPPPLPTTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHcccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHccccEEEEEccHHHHHHHccccccccHHHHHHccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccEEccccHHHHHHHHHHccHHHHHHHccccccccccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHccccccccccHHHHHHHHHHHccccHHHEEEEcccEccccccEccEccccEEEEccccccccccEEEEEEccEEEEEEHHHEEcccccccccccc
Coil and Loop (DISEMBL)
mssintnialapsssnsnnsttSQIQSSMNSQKPVLFLLLGITClalapsssnsnnsttSQIQSsmnsqkpvssvaptALHEQQQALVFQAAstkvhpvqpitlmstsqqlssvkdnkndrteshtdsetlspkpalppkpavpikstppppprqsnissvdtneeevkNTTQVVDakgnldmvktGQLEQRIFNlnlrdsdnnkrlngsiaistqeldgsqprratlsivtkdtscppplptteppsddninnniedikedktsdfstespdqtdrvinsspsdsnnQEIAEIKSALKsgklgkkrcvsfdPLALLLDASLEGELELVMKTARlvkdpsaandegITALHNAICAGHFDIVRFLVQFgcdvnaqdsdgwmplhcaaSCNNLAMVRFLVEHGACifatthsdhetaavkceedeegfeGCSEFLYSVQEKLgilnngavyalydyeanntdelsfktGECIIVLRKGDENEREWWWSKLnnkegyvprnllglyprvqpsatpq
Flexible Loop (DISEMBL)
mssintnialapsssnsnnSTTSQIQSSMNSQKPVLFLLLGITCLALAPSSSNSNNSTTSQIQSSMNSQKPVSSVAPTALHEQQQALVFQAASTKVHPVQPITLMSTSQQLSSVKDNKNDRTeshtdsetlspkpalppkpavpikstppppprqsnissvdtneeevknttqvvdakgnldmVKTGQLEQRIFnlnlrdsdnnkRLNGSIAistqeldgsqprrATLSivtkdtscppplptteppsddninNNIEDIkedktsdfstespdqtdrvinsspsdsnnqeIAEIKSalksgklgkkRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLnnkegyvprnllglyprvqpsatpq
Low Complexity Region (SEG)
MSSINTNIALAPsssnsnnsttsqiqssmnsqKPVLFLLLGITCLALAPsssnsnnsttsqiqssmnsqKPVSSVAPTALHEQQQALVFQAASTKVHPVQPITLMSTSQQLSSVKDNKNDRTESHTDSETLSpkpalppkpavpIKSTPPPPPRQSNISSVDTNEEEVKNTTQVVDAKGNLDMVKTGQLEQRIFNLNLRDSDNNKRLNGSIAISTQELDGSQPRRATLSIVTKDTSCppplptteppSddninnniedikedkTSDFSTESPDQTDRVINSSPSDSNNQEIAEIksalksgklgkkRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKceedeegfegcsefLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ
Disordered region (IsUnstruct)
**********************************VLFLLLGITCLAL*********************************************************************************************************************************************LEQRIFNL***********************************************************************************************************GKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP*********
Disordered Region (DISOPRED)
***********************************************************************************************************************************************************************VKNTTQVVDAKGNLDMVKTGQLEQRIFNLNLRDSDNNKRLNGSIAISTQELDGSQPRRATLSIVTKDTSCPPPLPTTEPPSDDNINNNIEDIKEDKT***********DRVINSSPSDSNNQEIAEIKSAL**********VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP**Q******
Disordered Region (DISEMBL)
******************************SQKPVLFLLLGITCLALAP****************************TALHEQQQALVFQAASTKVHPVQPITLMSTS***************************ALPPKPAVPIK************************TTQVVDAKGNLDMVKTGQLEQRIFNLNLRDSDNNKRLNGSIAISTQELDGSQPRRATLSIVTKDTSCPPPLPTTEPPSDDNINNNIEDIKED****************INSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH**************EGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ
Disordered Region (DISPRO)
*************************************************************************************************************************************************************************************DMVKTGQLEQRIFNLN***********GSIAISTQ*************************************************************VINS*******QEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSINTNIALAPSSSNSNNSTTSQIQSSMNSQKPVLFLLLGITCLALAPSSSNSNNSTTSQIQSSMNSQKPVSSVAPTALHEQQQALVFQAASTKVHPVQPITLMSTSQQLSSVKDNKNDRTESHTDSETLSPKPALPPKPAVPIKSTPPPPPRQSNISSVDTNEEEVKNTTQVVDAKGNLDMVKTGQLEQRIFNLNLRDSDNNKRLNGSIAISTQELDGSQPRRATLSIVTKDTSCPPPLPTTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	514	2.2.26 [Sep-21-2011]
Q13625	1128	Apoptosis-stimulating of	no	N/A	0.408	0.186	0.638	4e-85
Q62415	1087	Apoptosis-stimulating of	yes	N/A	0.529	0.250	0.551	1e-84
Q96KQ4	1090	Apoptosis-stimulating of	no	N/A	0.408	0.192	0.633	3e-82
Q8CG79	1128	Apoptosis-stimulating of	no	N/A	0.391	0.178	0.666	5e-76
Q8WUF5	828	RelA-associated inhibitor	no	N/A	0.422	0.262	0.527	7e-68
Q5I1X5	824	RelA-associated inhibitor	no	N/A	0.420	0.262	0.520	1e-66
Q9XVN3	769	Apoptotic enhancer 1 prot	yes	N/A	0.398	0.266	0.586	4e-62
O14974	1030	Protein phosphatase 1 reg	no	N/A	0.165	0.082	0.407	2e-16
Q10728	1032	Protein phosphatase 1 reg	no	N/A	0.161	0.080	0.407	2e-16
Q9DBR7	1029	Protein phosphatase 1 reg	no	N/A	0.171	0.085	0.407	3e-16

>sp|Q13625|ASPP2_HUMAN Apoptosis-stimulating of p53 protein 2 OS=Homo sapiens GN=TP53BP2 PE=1 SV=2

 Score =  315 bits (808), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 134/210 (63%), Positives = 167/210 (79%)

Query: 300  SGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHF 359
            S ++     V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH 
Sbjct: 913  SERIAHGMRVKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHT 972

Query: 360  DIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVK 419
            +IV+FLVQFG +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K
Sbjct: 973  EIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADK 1032

Query: 420  CEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE 479
            CEE EEG+  CS+FLY VQEK+GI+N G +YAL+DYE  N DEL  K G+C+ ++ + DE
Sbjct: 1033 CEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDE 1092

Query: 480  NEREWWWSKLNNKEGYVPRNLLGLYPRVQP 509
            +E EWWW++LN+KEGYVPRNLLGLYPR++P
Sbjct: 1093 DEIEWWWARLNDKEGYVPRNLLGLYPRIKP 1122

Regulator that plays a central role in regulation of apoptosis and cell growth via its interactions. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo. Inhibits the ability of APPBP1 to conjugate NEDD8 to CUL1, and thereby decreases APPBP1 ability to induce apoptosis. Impedes cell cycle progression at G2/M. Its apoptosis-stimulating activity is inhibited by its interaction with DDX42.
Homo sapiens (taxid: 9606)

>sp|Q62415|ASPP1_MOUSE Apoptosis-stimulating of p53 protein 1 OS=Mus musculus GN=Ppp1r13b PE=1 SV=2

 Score =  314 bits (805), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 154/279 (55%), Positives = 196/279 (70%), Gaps = 7/279 (2%)

Query: 237  CPPPLPTTEPPSDDNINNNIEDIKE-DKTSDFSTESPDQTDRVINS--SPSDSNNQEIAE 293
            CP     T  P++DN NNN+  +   ++      E+P + D+V  +  SP        A 
Sbjct: 804  CPQTTHQTAEPTEDN-NNNVAPVPSTEQIPSPVAEAPSEEDQVPPAPLSPVIHPPAASAS 862

Query: 294  IKSALK---SGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITAL 350
             ++ LK   S + G    V F+PLALLLDASLEGE +LV +    V+DPS  NDEGIT L
Sbjct: 863  KRTNLKKPNSERTGHGLRVRFNPLALLLDASLEGEFDLVQRIIYEVEDPSKPNDEGITPL 922

Query: 351  HNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTH 410
            HNA+CAGH  IV+FL+ FG +VNA DSDGW PLHCAASCN++ + + LVE GA IFA+T 
Sbjct: 923  HNAVCAGHHHIVKFLLDFGVNVNAADSDGWTPLHCAASCNSVHLCKQLVESGAAIFASTI 982

Query: 411  SDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGEC 470
            SD ETAA KCEE EEG+  CS+FLY VQEKLG++N G VYAL+DYEA N+DELSF  G+ 
Sbjct: 983  SDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKGTVYALWDYEAQNSDELSFHEGDA 1042

Query: 471  IIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 509
            I +LR+ DENE EWWW++L ++EGYVP+NLLGLYPR++P
Sbjct: 1043 ITILRRKDENETEWWWARLGDREGYVPKNLLGLYPRIKP 1081

Regulator that plays a central role in regulation of apoptosis via its interaction with p53/TP53. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo.

Mus musculus (taxid: 10090)

>sp|Q96KQ4|ASPP1_HUMAN Apoptosis-stimulating of p53 protein 1 OS=Homo sapiens GN=PPP1R13B PE=1 SV=3

 Score =  306 bits (784), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 133/210 (63%), Positives = 165/210 (78%)

Query: 300  SGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHF 359
            S + G    V F+PLALLLDASLEGE +LV +    V+DPS  NDEGIT LHNA+CAGH 
Sbjct: 875  SERTGHGLRVRFNPLALLLDASLEGEFDLVQRIIYEVEDPSKPNDEGITPLHNAVCAGHH 934

Query: 360  DIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVK 419
             IV+FL+ FG +VNA DSDGW PLHCAASCN++ + + LVE GA IFA+T SD ETAA K
Sbjct: 935  HIVKFLLDFGVNVNAADSDGWTPLHCAASCNSVHLCKQLVESGAAIFASTISDIETAADK 994

Query: 420  CEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE 479
            CEE EEG+  CS+FLY VQEKLG++N G  YAL+DYEA N+DELSF  G+ + +LR+ DE
Sbjct: 995  CEEMEEGYIQCSQFLYGVQEKLGVMNKGVAYALWDYEAQNSDELSFHEGDALTILRRKDE 1054

Query: 480  NEREWWWSKLNNKEGYVPRNLLGLYPRVQP 509
            +E EWWW++L ++EGYVP+NLLGLYPR++P
Sbjct: 1055 SETEWWWARLGDREGYVPKNLLGLYPRIKP 1084

Regulator that plays a central role in regulation of apoptosis via its interaction with p53/TP53. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo.

Homo sapiens (taxid: 9606)

>sp|Q8CG79|ASPP2_MOUSE Apoptosis-stimulating of p53 protein 2 OS=Mus musculus GN=Tp53bp2 PE=1 SV=3

 Score =  285 bits (729), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 134/201 (66%), Positives = 164/201 (81%)

Query: 309  VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
            V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct: 922  VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 981

Query: 369  GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFE 428
            G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA KCEE EEG+ 
Sbjct: 982  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 1041

Query: 429  GCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
             CS+FLY VQEK+GI+N G +YAL+DYE  + DEL  K G+C+ V+R+ DE E EWWW++
Sbjct: 1042 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQHDDELLMKEGDCMTVIRREDEEEIEWWWAR 1101

Query: 489  LNNKEGYVPRNLLGLYPRVQP 509
            LN+KEGYVPRNLLGLYPR++P
Sbjct: 1102 LNDKEGYVPRNLLGLYPRIKP 1122

Regulator that plays a central role in regulation of apoptosis and cell growth via its interactions. Regulates p53/TP53 by enhancing the DNA binding and transactivation function of p53/TP53 on the promoters of proapoptotic genes in vivo. Inhibits the ability of APPBP1 to conjugate NEDD8 to CUL1, and thereby decreases APPBP1 ability to induce apoptosis. Impedes cell cycle progression at G2/M. Its apoptosis-stimulating activity is inhibited by its interaction with DDX42.

Mus musculus (taxid: 10090)

>sp|Q8WUF5|IASPP_HUMAN RelA-associated inhibitor OS=Homo sapiens GN=PPP1R13L PE=1 SV=4

 Score =  258 bits (659), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 115/218 (52%), Positives = 153/218 (70%), Gaps = 1/218 (0%)

Query: 293 EIKSAL-KSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALH 351
           E++S L K+G   K R    +PL LLLDA+L GELE+V +  + + DPS  N+EGITALH
Sbjct: 606 EMRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALH 665

Query: 352 NAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
           NAIC  ++ IV FL+  G +VN+ DS GW PLHCAASCN+  +   LV+HGA IFATT S
Sbjct: 666 NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 725

Query: 412 DHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECI 471
           D  TA  KC+   EG+  C+ +L  V++ +G++N+GAVYAL+DY A   DELSF+ GE +
Sbjct: 726 DGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESV 785

Query: 472 IVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 509
            VLR+    E +WWW+ L+ +EGYVPRN  GL+PRV+P
Sbjct: 786 TVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 823

Regulator that plays a central role in regulation of apoptosis and transcription via its interaction with NF-kappa-B and p53/TP53 proteins. Blocks transcription of HIV-1 virus by inhibiting the action of both NF-kappa-B and SP1. Also inhibits p53/TP53 function, possibly by preventing the association between p53/TP53 and ASPP1 or ASPP2, and therefore suppressing the subsequent activation of apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q5I1X5|IASPP_MOUSE RelA-associated inhibitor OS=Mus musculus GN=Ppp1r13l PE=1 SV=1

 Score =  254 bits (648), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 113/217 (52%), Positives = 151/217 (69%), Gaps = 1/217 (0%)

Query: 293 EIKSAL-KSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALH 351
           E++S L K G   K R    +PL LLLDA+L GEL++V +  + + DPS  N+EGITALH
Sbjct: 602 EMRSVLRKVGSPRKARRARLNPLVLLLDAALTGELDVVQQAVKEMNDPSQPNEEGITALH 661

Query: 352 NAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
           NAIC  ++ IV FL+  G +VN+ DS GW PLHCAASCN+ A+   LV+HGA IFATT S
Sbjct: 662 NAICGANYPIVDFLIAAGANVNSPDSHGWTPLHCAASCNDTAICTALVQHGAAIFATTLS 721

Query: 412 DHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECI 471
           D  TA  KC+   EG+  C+ +L  V++ +G+++NG VYAL+DY A   DELSF+ GE +
Sbjct: 722 DGATAIEKCDPYREGYADCATYLADVEQSMGLMHNGVVYALWDYSAEFGDELSFREGESV 781

Query: 472 IVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
            VLR+    E +WWW+ L+ +EGYVPRN  GL+PRV+
Sbjct: 782 TVLRRDGPEETDWWWASLHGQEGYVPRNYFGLFPRVK 818

Regulator that plays a central role in regulation of apoptosis and transcription via its interaction with NF-kappa-B and p53/TP53 proteins. Inhibits p53/TP53 function, possibly by preventing the association between p53/TP53 and ASPP1 or ASPP2, and therefore suppressing the subsequent activation of apoptosis.

Mus musculus (taxid: 10090)

>sp|Q9XVN3|IASPP_CAEEL Apoptotic enhancer 1 protein OS=Caenorhabditis elegans GN=ape-1 PE=1 SV=1

 Score =  239 bits (610), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 122/208 (58%), Positives = 150/208 (72%), Gaps = 3/208 (1%)

Query: 302 KLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI 361
           K+ K R + FDPLALLLDA+LEGEL+LV  +A  + D S ANDEGITALHNAICAGH++I
Sbjct: 543 KMNKGR-IEFDPLALLLDAALEGELDLVRSSASKLTDVSQANDEGITALHNAICAGHYEI 601

Query: 362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCE 421
           VRFL++   DVNAQDSDGW PLHCAASCNNL MVR LVE G C+ A+T SD ET   KCE
Sbjct: 602 VRFLIENDADVNAQDSDGWTPLHCAASCNNLPMVRQLVEGGGCVLASTLSDMETPVEKCE 661

Query: 422 EDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENE 481
           EDE+G++GC ++L +     G +N G VYA Y YEA   DELSF  G+ + V+ K D+ +
Sbjct: 662 EDEDGYDGCLKYLSAAHNSTGSINTGKVYAAYGYEAAFEDELSFDAGDELTVIEK-DKVD 720

Query: 482 REWWWSKLNNKE-GYVPRNLLGLYPRVQ 508
           + WW  + NN E G VPR  L LYP ++
Sbjct: 721 KNWWTCEKNNGEKGQVPRTYLALYPSLK 748

Inhibitor of cep-1, which prevents the activation of apoptosis.

Caenorhabditis elegans (taxid: 6239)

>sp|O14974|MYPT1_HUMAN Protein phosphatase 1 regulatory subunit 12A OS=Homo sapiens GN=PPP1R12A PE=1 SV=1

 Score = 87.8 bits (216), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%)

Query: 305 KKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF 364
           +K  V FD  A+ L A   G+ + V+K      D + AN +G+TALH A    + D+V+F
Sbjct: 32  QKTKVKFDDGAVFLAACSSGDTDEVLKLLHRGADINYANVDGLTALHQACIDDNVDMVKF 91

Query: 365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           LV+ G ++N  D++GW+PLH AASC  L +  FL+  GA + A
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEFLIGQGAHVGA 134

Key regulator of protein phosphatase 1C (PPP1C). Mediates binding to myosin. As part of the PPP1C complex, involved in dephosphorylation of PLK1. Capable of inhibiting HIF1AN-dependent suppression of HIF1A activity.

Homo sapiens (taxid: 9606)

>sp|Q10728|MYPT1_RAT Protein phosphatase 1 regulatory subunit 12A OS=Rattus norvegicus GN=Ppp1r12a PE=1 SV=2

 Score = 87.4 bits (215), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%)

Query: 305 KKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF 364
           +K  V FD  A+ L A   G+ + V+K      D + AN +G+TALH A    + D+V+F
Sbjct: 32  QKTKVKFDDGAVFLAACSSGDTDEVLKLLHRGADINYANVDGLTALHQACIDDNVDMVKF 91

Query: 365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           LV+ G ++N  D++GW+PLH AASC  L +  FL+  GA + A
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEFLIGQGAHVGA 134

Key regulator of protein phosphatase 1C (PPP1C). Mediates binding to myosin. As part of the PPP1C complex, involved in dephosphorylation of PLK1. Capable of inhibiting HIF1AN-dependent suppression of HIF1A activity.

Rattus norvegicus (taxid: 10116)

>sp|Q9DBR7|MYPT1_MOUSE Protein phosphatase 1 regulatory subunit 12A OS=Mus musculus GN=Ppp1r12a PE=1 SV=2

 Score = 87.4 bits (215), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 62/103 (60%)

Query: 305 KKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF 364
           +K  V FD  A+ L A   G+ + V+K      D + AN +G+TALH A    + D+V+F
Sbjct: 32  QKTKVKFDDGAVFLAACSSGDTDEVLKLLHRGADINYANVDGLTALHQACIDDNVDMVKF 91

Query: 365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           LV+ G ++N  D++GW+PLH AASC  L +  FL+  GA + A
Sbjct: 92  LVENGANINQPDNEGWIPLHAAASCGYLDIAEFLIGQGAHVGA 134

Key regulator of protein phosphatase 1C (PPP1C). Mediates binding to myosin. As part of the PPP1C complex, involved in dephosphorylation of PLK1. Capable of inhibiting HIF1AN-dependent suppression of HIF1A activity.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
340719671	1289	PREDICTED: hypothetical protein LOC10064	0.482	0.192	0.707	1e-107
350400919	1292	PREDICTED: hypothetical protein LOC10074	0.482	0.191	0.707	1e-107
380029713	1308	PREDICTED: uncharacterized protein LOC10	0.433	0.170	0.782	1e-107
383862741	1287	PREDICTED: uncharacterized protein LOC10	0.463	0.184	0.741	1e-107
328785901	1329	PREDICTED: hypothetical protein LOC41022	0.482	0.186	0.707	1e-107
307177764	1216	Apoptosis-stimulating of p53 protein 1 [	0.398	0.168	0.815	1e-107
332018007	1074	Apoptosis-stimulating of p53 protein 1 [	0.385	0.184	0.838	1e-106
328722181	1041	PREDICTED: hypothetical protein LOC10016	0.428	0.211	0.788	1e-105
242010471	908	apoptosis stimulating of P53, putative [	0.815	0.461	0.476	1e-105
270005081	891	hypothetical protein TcasGA2_TC007089 [T	0.463	0.267	0.721	1e-104

>gi|340719671|ref|XP_003398271.1| PREDICTED: hypothetical protein LOC100646232 [Bombus terrestris]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 214/256 (83%), Gaps = 8/256 (3%)

Query: 255  NIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPL 314
            NIED  + K      ES  +T+  ++   ++   ++   +KS+  +GK    R VSFDPL
Sbjct: 1039 NIEDKAKAK------ESERRTELEVDGKSNEVMRRKKGNLKSS--TGKANLSRRVSFDPL 1090

Query: 315  ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA 374
            ALLLDASLEGELELV KTA+ V +PS+ANDEGITALHNAICAGH +IV+FLV+FGCDVNA
Sbjct: 1091 ALLLDASLEGELELVKKTAKEVANPSSANDEGITALHNAICAGHLEIVKFLVEFGCDVNA 1150

Query: 375  QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL 434
            QDSDGW PLHCAASCNNL+MVRFLVEHGACIFATT SDHETAA KCEEDEEGF+GCSE+L
Sbjct: 1151 QDSDGWTPLHCAASCNNLSMVRFLVEHGACIFATTLSDHETAAEKCEEDEEGFDGCSEYL 1210

Query: 435  YSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG 494
            YSVQEKLGI+NNG VYA++DYEA ++DEL+ K G+ ++VLRKGD+NEREWWWSKL +KEG
Sbjct: 1211 YSVQEKLGIMNNGQVYAVFDYEAQHSDELTLKNGDSLVVLRKGDDNEREWWWSKLGHKEG 1270

Query: 495  YVPRNLLGLYPRVQPS 510
            YVPRNLLGLYPRVQP+
Sbjct: 1271 YVPRNLLGLYPRVQPA 1286

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400919|ref|XP_003486003.1| PREDICTED: hypothetical protein LOC100743731 [Bombus impatiens]

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 214/256 (83%), Gaps = 8/256 (3%)

Query: 255  NIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPL 314
            NIED  + K      ES  +T+  ++   ++   ++   +KS+  +GK    R VSFDPL
Sbjct: 1042 NIEDKAKAK------ESERRTELEVDGKSNEVMRRKKGNLKSS--TGKANLSRRVSFDPL 1093

Query: 315  ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA 374
            ALLLDASLEGELELV KTA+ V +PS+ANDEGITALHNAICAGH +IV+FLV+FGCDVNA
Sbjct: 1094 ALLLDASLEGELELVKKTAKEVANPSSANDEGITALHNAICAGHLEIVKFLVEFGCDVNA 1153

Query: 375  QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL 434
            QDSDGW PLHCAASCNNL+MVRFLVEHGACIFATT SDHETAA KCEEDEEGF+GCSE+L
Sbjct: 1154 QDSDGWTPLHCAASCNNLSMVRFLVEHGACIFATTLSDHETAAEKCEEDEEGFDGCSEYL 1213

Query: 435  YSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG 494
            YSVQEKLGI+NNG VYA++DYEA ++DEL+ K G+ ++VLRKGD+NEREWWWSKL +KEG
Sbjct: 1214 YSVQEKLGIMNNGQVYAVFDYEAQHSDELTLKNGDSLVVLRKGDDNEREWWWSKLGHKEG 1273

Query: 495  YVPRNLLGLYPRVQPS 510
            YVPRNLLGLYPRVQP+
Sbjct: 1274 YVPRNLLGLYPRVQPA 1289

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029713|ref|XP_003698511.1| PREDICTED: uncharacterized protein LOC100870125 [Apis florea]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 176/225 (78%), Positives = 199/225 (88%), Gaps = 2/225 (0%)

Query: 288  NQEIAEIKSALKS--GKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDE 345
            N+ +   K  LKS  GK    R VSFDPLALLLDASLEGELELV KTA+ V +PS+ANDE
Sbjct: 1081 NEVMRRKKGNLKSSTGKANLSRRVSFDPLALLLDASLEGELELVKKTAKEVANPSSANDE 1140

Query: 346  GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
            GITALHNAICAGH +IV+FLV+FGCDVNAQDSDGW PLHCAASCNNL+MVRFLVEHGACI
Sbjct: 1141 GITALHNAICAGHLEIVKFLVEFGCDVNAQDSDGWTPLHCAASCNNLSMVRFLVEHGACI 1200

Query: 406  FATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSF 465
            FATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA ++DEL+ 
Sbjct: 1201 FATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHSDELTL 1260

Query: 466  KTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 510
            K G+ ++VLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1261 KNGDSLVVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1305

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862741|ref|XP_003706842.1| PREDICTED: uncharacterized protein LOC100877563 [Megachile rotundata]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 178/240 (74%), Positives = 202/240 (84%), Gaps = 2/240 (0%)

Query: 273  DQTDRVINSSPSDSNNQEIAEIKSALKS--GKLGKKRCVSFDPLALLLDASLEGELELVM 330
            D   R   +     +N+ +   K  LKS  GK    R VSFDPLALLLDASLEGELELV 
Sbjct: 1045 DSERRTTETEVESKSNEVMRRKKGNLKSSTGKANLSRRVSFDPLALLLDASLEGELELVK 1104

Query: 331  KTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
            KTA+ V +PS+ANDEGITALHNAICAGH +IV FLV+FGCDVNAQDSDGW PLHCAASCN
Sbjct: 1105 KTAKEVANPSSANDEGITALHNAICAGHLEIVMFLVEFGCDVNAQDSDGWTPLHCAASCN 1164

Query: 391  NLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVY 450
            NL+MVRFLVEHGACIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VY
Sbjct: 1165 NLSMVRFLVEHGACIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVY 1224

Query: 451  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 510
            A++DYEA ++DEL+ K G+ ++VLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1225 AVFDYEAQHSDELTLKNGDSLVVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1284

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785901|ref|XP_393703.4| PREDICTED: hypothetical protein LOC410220 [Apis mellifera]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/256 (70%), Positives = 213/256 (83%), Gaps = 8/256 (3%)

Query: 255  NIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPL 314
            NIED  + K S+  TE        ++   ++   ++   +KS+  +GK    R VSFDPL
Sbjct: 1079 NIEDKVKAKDSERRTELE------VDGKSNEVMRRKKGNLKSS--TGKANLSRRVSFDPL 1130

Query: 315  ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA 374
            ALLLDASLEGELELV KTA+ V +PS+ANDEGITALHNAICAGH +IV+FLV+FGCDVNA
Sbjct: 1131 ALLLDASLEGELELVKKTAKEVANPSSANDEGITALHNAICAGHLEIVKFLVEFGCDVNA 1190

Query: 375  QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL 434
            QDSDGW PLHCAASCNNL+MVRFLVEHGACIFATT SDHETAA KCEEDEEGF+GCSE+L
Sbjct: 1191 QDSDGWTPLHCAASCNNLSMVRFLVEHGACIFATTLSDHETAAEKCEEDEEGFDGCSEYL 1250

Query: 435  YSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG 494
            YSVQEKLGI+NNG VYA++DYEA ++DEL+ K G+ ++VLRKGD+NEREWWWSKL +KEG
Sbjct: 1251 YSVQEKLGIMNNGQVYAVFDYEAQHSDELTLKNGDSLVVLRKGDDNEREWWWSKLGHKEG 1310

Query: 495  YVPRNLLGLYPRVQPS 510
            YVPRNLLGLYPRVQP+
Sbjct: 1311 YVPRNLLGLYPRVQPA 1326

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307177764|gb|EFN66761.1| Apoptosis-stimulating of p53 protein 1 [Camponotus floridanus]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 172/211 (81%), Positives = 192/211 (90%)

Query: 302  KLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI 361
            K+   R VSFDPLALLLDASLEGELELV KTA+ V +PS+ANDEGITALHNAICAGH +I
Sbjct: 1004 KVNLSRRVSFDPLALLLDASLEGELELVKKTAKEVANPSSANDEGITALHNAICAGHLEI 1063

Query: 362  VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCE 421
            V+FLV+FGCDVNAQDSDGW PLHCAASCNNL+MVRFLVEHGACIFATT SDHETAA KCE
Sbjct: 1064 VKFLVEFGCDVNAQDSDGWTPLHCAASCNNLSMVRFLVEHGACIFATTLSDHETAAEKCE 1123

Query: 422  EDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENE 481
            EDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA + DELS K G+ ++VLRKGD+NE
Sbjct: 1124 EDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHADELSLKNGDSVVVLRKGDDNE 1183

Query: 482  REWWWSKLNNKEGYVPRNLLGLYPRVQPSAT 512
            REWWWSKL +KEGYVPRNLLGLYPRVQP+ T
Sbjct: 1184 REWWWSKLGHKEGYVPRNLLGLYPRVQPAKT 1214

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018007|gb|EGI58636.1| Apoptosis-stimulating of p53 protein 1 [Acromyrmex echinatior]

 Score =  392 bits (1007), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 171/204 (83%), Positives = 189/204 (92%)

Query: 307  RCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLV 366
            R VSFDPLALLLDASLEGELELV KTA+ V +PS+ANDEGITALHNAICAGH +IV+FLV
Sbjct: 867  RRVSFDPLALLLDASLEGELELVKKTAKEVANPSSANDEGITALHNAICAGHLEIVKFLV 926

Query: 367  QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEG 426
            +FGCDVNAQDSDGW PLHCAASCNNL+MVRFLVEHGACIFATT SDHETAA KCEEDEEG
Sbjct: 927  EFGCDVNAQDSDGWTPLHCAASCNNLSMVRFLVEHGACIFATTLSDHETAAEKCEEDEEG 986

Query: 427  FEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 486
            F+GCSE+LYSVQEKLGI+NNG VYA++DYEA + DELS K G+ +IVLRKGD+NEREWWW
Sbjct: 987  FDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHADELSLKNGDSVIVLRKGDDNEREWWW 1046

Query: 487  SKLNNKEGYVPRNLLGLYPRVQPS 510
            SKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1047 SKLGHKEGYVPRNLLGLYPRVQPA 1070

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722181|ref|XP_001946955.2| PREDICTED: hypothetical protein LOC100161456 [Acyrthosiphon pisum]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 175/222 (78%), Positives = 196/222 (88%), Gaps = 2/222 (0%)

Query: 288  NQEIAEIKSALK--SGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDE 345
            N+ +   K  LK   G +G KR VSFDPLALLLDASLEGELELVM+TA  V +PSAANDE
Sbjct: 811  NRLVVRKKGNLKESGGSIGHKRRVSFDPLALLLDASLEGELELVMRTAEQVGNPSAANDE 870

Query: 346  GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
            GITALHNAICAGH DIV+FLV+FGCDVNAQDSDGW PLHCAASCNNLAMVRFLVEHGACI
Sbjct: 871  GITALHNAICAGHIDIVKFLVKFGCDVNAQDSDGWTPLHCAASCNNLAMVRFLVEHGACI 930

Query: 406  FATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSF 465
            FATT SD ETAA KCEEDEEGF+GCSEFLYSVQEKLGI+NNGAVYA++ YEA+N DEL+F
Sbjct: 931  FATTLSDQETAAEKCEEDEEGFDGCSEFLYSVQEKLGIMNNGAVYAVFGYEAHNQDELTF 990

Query: 466  KTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 507
              G+ I+VLRKGD+ EREWWWS+++++EGYVPRNLLGLYPRV
Sbjct: 991  DDGDRIVVLRKGDDTEREWWWSRIDDREGYVPRNLLGLYPRV 1032

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010471|ref|XP_002425991.1| apoptosis stimulating of P53, putative [Pediculus humanus corporis] gi|212509982|gb|EEB13253.1| apoptosis stimulating of P53, putative [Pediculus humanus corporis]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 231/485 (47%), Positives = 302/485 (62%), Gaps = 66/485 (13%)

Query: 62  IQSSMNSQKPVSSVAPTALHEQQQ-------------ALVFQAASTKVHPVQPITLMSTS 108
           + +S +S KP+SSVAPT++ ++               + ++Q +STK+ PVQP TL    
Sbjct: 443 VSTSNSSGKPISSVAPTSIVQKLSPKNFLTSIDKPNPSSIYQTSSTKILPVQPQTL--GG 500

Query: 109 QQLSSVKDNKNDRTESHTDSETLSPKPALPPKPAVPIKSTPPPPPRQSNISSVDTNEEEV 168
           +QL S      + TES       + KPALPPKPAVPIK +PPPPPR  +      ++  V
Sbjct: 501 EQLISNHLMIAEGTESK------NKKPALPPKPAVPIKPSPPPPPRLGHPPECPESKGFV 554

Query: 169 KNTTQVVDAKGNLDMVKTGQLEQRIFNLNLRDSDNNKR---------------------L 207
           + T +      +LD    G+L   + N  + +  +N+                       
Sbjct: 555 EITAE------SLDQALGGKLPGVVLNCKMDEVPSNREPSRSPTPPPPPPPTSEPPPDDY 608

Query: 208 NGSIAISTQELDGSQPRRATL---------SIVTKDTSCPPPLPTTEPPSDDNINNNIED 258
           N ++ +   +LD    +   +         ++V  + S    +    PP+       + +
Sbjct: 609 NSTMMMDNFDLDVKDDKSVNVDNNISNQSSNLVNSNESGTTLINNYMPPAFMYPETEVNN 668

Query: 259 IKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLL 318
           +K++       +  ++T+ V+    +DS      E+ + + +G     R VSFDPLALLL
Sbjct: 669 VKDENDKYIMGKKFEETEEVVLKYSNDS-----PEVHNNIGNGC----RRVSFDPLALLL 719

Query: 319 DASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD 378
           DASLEGELELV+KTA  V +PSAANDEGITALHNAICAGH +IV+FLV+FGCDVNAQDSD
Sbjct: 720 DASLEGELELVIKTASQVANPSAANDEGITALHNAICAGHLEIVKFLVEFGCDVNAQDSD 779

Query: 379 GWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ 438
           GW PLHCAASCNNLAMVRFLVEHGACIFATT SDHETAA KCEEDEEGF+GCSE+LYS+Q
Sbjct: 780 GWTPLHCAASCNNLAMVRFLVEHGACIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSIQ 839

Query: 439 EKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 498
           EKLGILNNG VYA+YDY A+N DELSF  G+ +I+LRKGDE EREWWWS+L +KEGY PR
Sbjct: 840 EKLGILNNGMVYAVYDYTAHNNDELSFSEGDRLIILRKGDEMEREWWWSRLQDKEGYTPR 899

Query: 499 NLLGL 503
           NLLG+
Sbjct: 900 NLLGV 904

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005081|gb|EFA01529.1| hypothetical protein TcasGA2_TC007089 [Tribolium castaneum]

 Score =  384 bits (986), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 184/255 (72%), Positives = 204/255 (80%), Gaps = 17/255 (6%)

Query: 261 EDKTSDFSTESP-DQTDRVINSSPSDSNNQEIAE-------IKSALKSGKLGKKRCVSFD 312
           E+K+ D     P D+ DRV          +EI E        K  LKSGK    R VSFD
Sbjct: 641 EEKSDDDCGSKPVDEPDRV---------EEEIEENGVIRRCKKGNLKSGKSNLARRVSFD 691

Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PLALLLDASLEGELELV KTA  V +PSAANDEGITALHNAICAGHF+IV++LV+FGCDV
Sbjct: 692 PLALLLDASLEGELELVKKTATQVTNPSAANDEGITALHNAICAGHFEIVKYLVEFGCDV 751

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSE 432
           NAQDSDGW PLHCAASCNN++MV+FLVEHGACIFATT SDHETAA KCEEDEEGF+GCSE
Sbjct: 752 NAQDSDGWTPLHCAASCNNVSMVKFLVEHGACIFATTLSDHETAAEKCEEDEEGFDGCSE 811

Query: 433 FLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK 492
           +LYSVQEKLGIL+ G VYA++DY A   DELSFK G+ + VLRKGDENEREWWWSKL +K
Sbjct: 812 YLYSVQEKLGILSGGVVYAVFDYTAQQPDELSFKAGQQLTVLRKGDENEREWWWSKLGDK 871

Query: 493 EGYVPRNLLGLYPRV 507
           EGYVPRNLLGLYPRV
Sbjct: 872 EGYVPRNLLGLYPRV 886

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	514
FB|FBgn0034606	1069	ASPP "Ankyrin-repeat, SH3-doma	0.472	0.227	0.607	3.9e-76
RGD|1305461	1122	Tp53bp2 "tumor protein p53 bin	0.391	0.179	0.616	2.1e-68
UNIPROTKB|F1MWG7	1134	TP53BP2 "Uncharacterized prote	0.391	0.177	0.621	3.5e-68
UNIPROTKB|F1P2P1	1101	TP53BP2 "Uncharacterized prote	0.391	0.182	0.628	6.1e-68
UNIPROTKB|Q13625	1128	TP53BP2 "Apoptosis-stimulating	0.391	0.178	0.616	9.1e-68
UNIPROTKB|B7Z2E9	367	TP53BP2 "cDNA FLJ50500, highly	0.391	0.547	0.616	2.4e-67
UNIPROTKB|F1NWV9	1094	PPP1R13B "Uncharacterized prot	0.391	0.183	0.626	3.1e-67
UNIPROTKB|F1S642	1135	TP53BP2 "Uncharacterized prote	0.391	0.177	0.621	5.6e-67
UNIPROTKB|F1P985	1124	TP53BP2 "Uncharacterized prote	0.391	0.178	0.621	6.7e-67
MGI|MGI:2138319	1128	Trp53bp2 "transformation relat	0.391	0.178	0.621	1.9e-66

FB|FBgn0034606 ASPP "Ankyrin-repeat, SH3-domain, and Proline-rich-region containing Protein" [Drosophila melanogaster (taxid:7227)]

 Score = 767 (275.1 bits), Expect = 3.9e-76, P = 3.9e-76
 Identities = 158/260 (60%), Positives = 181/260 (69%)

Query:   265 SDFSTESPDQTDRVINSSPSDSNNQEIAEIXXXXXXXXXXXX--------------RCVS 310
             S  S  S D+TDR++  +PS + +Q+                              R VS
Sbjct:   805 SPSSESSADETDRMV--APSITTSQQETSTSATSTTTTVTTSNIKERTGNGKPKLGRRVS 862

Query:   311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
             FDPLALLLDASLEGELELV KTA  V +PSAANDEGITALHNAICAGH DIV+FLV+FGC
Sbjct:   863 FDPLALLLDASLEGELELVKKTAMQVANPSAANDEGITALHNAICAGHIDIVKFLVEFGC 922

Query:   371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXXXX 430
             DVNAQDSDGW PLHCAASCNNL+MV+FLVE GAC+FA+T SDHET A K           
Sbjct:   923 DVNAQDSDGWTPLHCAASCNNLSMVKFLVESGACLFASTLSDHETPAEKCEEDEEGFDGC 982

Query:   431 XXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-L 489
                LYS+QEKLGIL+NG VYA++ YEA N DELSF   E +IVLRKGD+ E EWWW++  
Sbjct:   983 SEYLYSIQEKLGILHNGDVYAVFSYEAQNGDELSFHVNEPLIVLRKGDDAENEWWWARNA 1042

Query:   490 NNKEGYVPRNLLGLYPRVQP 509
               +EGYVPRNLLGLYPRV P
Sbjct:  1043 AGEEGYVPRNLLGLYPRVPP 1062

GO:0061098 "positive regulation of protein tyrosine kinase activity" evidence=IGI

GO:0030296 "protein tyrosine kinase activator activity" evidence=IDA

GO:0005912 "adherens junction" evidence=IDA

RGD|1305461 Tp53bp2 "tumor protein p53 binding protein, 2" [Rattus norvegicus (taxid:10116)]

 Score = 682 (245.1 bits), Expect = 2.1e-68, Sum P(2) = 2.1e-68
 Identities = 124/201 (61%), Positives = 154/201 (76%)

Query:   309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
             V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct:   916 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 975

Query:   369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
             G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K         
Sbjct:   976 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 1035

Query:   429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                  LY VQEK+GI+N G +YAL+DY+  + DEL  K G+C+ V+R+ DE+E EWWW++
Sbjct:  1036 QCSQFLYGVQEKMGIMNKGVIYALWDYQPQHDDELLLKEGDCMAVVRREDEDETEWWWAR 1095

Query:   489 LNNKEGYVPRNLLGLYPRVQP 509
             LN+KEGYVPRNLLGLYPR++P
Sbjct:  1096 LNDKEGYVPRNLLGLYPRIKP 1116

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=IEA;ISO

GO:0007417 "central nervous system development" evidence=IEA;ISO

GO:0007507 "heart development" evidence=IEA;ISO

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA;ISO

GO:0010212 "response to ionizing radiation" evidence=IEA;ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA;ISO

GO:0051059 "NF-kappaB binding" evidence=IEA;ISO

UNIPROTKB|F1MWG7 TP53BP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 687 (246.9 bits), Expect = 3.5e-68, Sum P(2) = 3.5e-68
 Identities = 125/201 (62%), Positives = 154/201 (76%)

Query:   309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
             V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct:   928 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 987

Query:   369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
             G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K         
Sbjct:   988 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 1047

Query:   429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                  LY VQEK+GI+N G +YAL+DYE  N DEL  K G+C+ ++R+ DE+E EWWW++
Sbjct:  1048 QCSQFLYGVQEKMGIMNKGIIYALWDYEPQNDDELPMKEGDCMTIVRREDEDEIEWWWAR 1107

Query:   489 LNNKEGYVPRNLLGLYPRVQP 509
             LN+KEGYVPRNLLGLYPR++P
Sbjct:  1108 LNDKEGYVPRNLLGLYPRIKP 1128

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1P2P1 TP53BP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 696 (250.1 bits), Expect = 6.1e-68, P = 6.1e-68
 Identities = 127/202 (62%), Positives = 157/202 (77%)

Query:   309 VSFDPLALLLDASLEGELELVMKTA-RLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
             V F+PLALLLD+SLEGE +LV +    +V+DPS  NDEGITALHNA+CAGH +IV+FLVQ
Sbjct:   894 VKFNPLALLLDSSLEGEFDLVQRIIYEVVEDPSMPNDEGITALHNAVCAGHTEIVKFLVQ 953

Query:   368 FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXX 427
             FG +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K        
Sbjct:   954 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGY 1013

Query:   428 XXXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS 487
                   LY VQEK+GI+N G +Y L+DYEA N DELS K G+C+ +LR+ DE+E EWWW+
Sbjct:  1014 TQCSQFLYGVQEKMGIMNKGVIYGLWDYEAQNDDELSMKEGDCMTILRREDEDEIEWWWA 1073

Query:   488 KLNNKEGYVPRNLLGLYPRVQP 509
             +LN+KEGYVPRNLLGLYPR++P
Sbjct:  1074 RLNDKEGYVPRNLLGLYPRIKP 1095

GO:0007165 "signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

UNIPROTKB|Q13625 TP53BP2 "Apoptosis-stimulating of p53 protein 2" [Homo sapiens (taxid:9606)]

 Score = 684 (245.8 bits), Expect = 9.1e-68, Sum P(2) = 9.1e-68
 Identities = 124/201 (61%), Positives = 153/201 (76%)

Query:   309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
             V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct:   922 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 981

Query:   369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
             G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K         
Sbjct:   982 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 1041

Query:   429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                  LY VQEK+GI+N G +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++
Sbjct:  1042 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR 1101

Query:   489 LNNKEGYVPRNLLGLYPRVQP 509
             LN+KEGYVPRNLLGLYPR++P
Sbjct:  1102 LNDKEGYVPRNLLGLYPRIKP 1122

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0045786 "negative regulation of cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005070 "SH3/SH2 adaptor activity" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

UNIPROTKB|B7Z2E9 TP53BP2 "cDNA FLJ50500, highly similar to Apoptosis-stimulating of p53 protein 2" [Homo sapiens (taxid:9606)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 124/201 (61%), Positives = 153/201 (76%)

Query:   309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
             V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct:   161 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 220

Query:   369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
             G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K         
Sbjct:   221 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 280

Query:   429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                  LY VQEK+GI+N G +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++
Sbjct:   281 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR 340

Query:   489 LNNKEGYVPRNLLGLYPRVQP 509
             LN+KEGYVPRNLLGLYPR++P
Sbjct:   341 LNDKEGYVPRNLLGLYPRIKP 361

GO:0007417 "central nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

UNIPROTKB|F1NWV9 PPP1R13B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 675 (242.7 bits), Expect = 3.1e-67, Sum P(2) = 3.1e-67
 Identities = 126/201 (62%), Positives = 151/201 (75%)

Query:   309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
             V F+PLALLLDASLEGE +LV +    V DPS  NDEGIT LHNA+CAGH  IV+FL+ F
Sbjct:   888 VKFNPLALLLDASLEGEFDLVQRIIYEVDDPSKPNDEGITPLHNAVCAGHHHIVKFLLDF 947

Query:   369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
             G +VNA DSDGW PLHCAASCN++ + + LVE GA IFA+T SD ETAA K         
Sbjct:   948 GVNVNAADSDGWTPLHCAASCNSVHLCKLLVESGAAIFASTISDIETAADKCEEMEEGYI 1007

Query:   429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                  LY VQEKLG++N G VYAL+DYEA N DELSF  G+ I +LR+ D+NE EWWW++
Sbjct:  1008 QCSQFLYGVQEKLGVMNKGVVYALWDYEAQNNDELSFHEGDAITILRRKDDNETEWWWAR 1067

Query:   489 LNNKEGYVPRNLLGLYPRVQP 509
             LN+KEGYVP+NLLGLYPR++P
Sbjct:  1068 LNDKEGYVPKNLLGLYPRIKP 1088

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

UNIPROTKB|F1S642 TP53BP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 688 (247.2 bits), Expect = 5.6e-67, P = 5.6e-67
 Identities = 125/201 (62%), Positives = 154/201 (76%)

Query:   309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
             V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct:   929 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 988

Query:   369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
             G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K         
Sbjct:   989 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 1048

Query:   429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                  LY VQEK+GI+N G +YAL+DYE  N DEL  K G+C+ ++R+ DE+E EWWW++
Sbjct:  1049 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIVRREDEDEIEWWWAR 1108

Query:   489 LNNKEGYVPRNLLGLYPRVQP 509
             LN+KEGYVPRNLLGLYPR++P
Sbjct:  1109 LNDKEGYVPRNLLGLYPRIKP 1129

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P985 TP53BP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 687 (246.9 bits), Expect = 6.7e-67, P = 6.7e-67
 Identities = 125/201 (62%), Positives = 155/201 (77%)

Query:   309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
             V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct:   918 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 977

Query:   369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
             G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FATT+SD +TAA K         
Sbjct:   978 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFATTYSDMQTAADKCEEMEEGYT 1037

Query:   429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                  LY VQEK+GI+N G +YAL+DYE  N DEL  + G+C+ V+R+ DE+E EWWW++
Sbjct:  1038 QCSQFLYGVQEKMGIMNKGVLYALWDYEPQNGDELPMREGDCMTVIRREDEDETEWWWAR 1097

Query:   489 LNNKEGYVPRNLLGLYPRVQP 509
             L++KEGYVPRNLLGLYPR++P
Sbjct:  1098 LHDKEGYVPRNLLGLYPRIKP 1118

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:2138319 Trp53bp2 "transformation related protein 53 binding protein 2" [Mus musculus (taxid:10090)]

 Score = 683 (245.5 bits), Expect = 1.9e-66, P = 1.9e-66
 Identities = 125/201 (62%), Positives = 153/201 (76%)

Query:   309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
             V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct:   922 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 981

Query:   369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
             G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K         
Sbjct:   982 GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 1041

Query:   429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                  LY VQEK+GI+N G +YAL+DYE  + DEL  K G+C+ V+R+ DE E EWWW++
Sbjct:  1042 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQHDDELLMKEGDCMTVIRREDEEEIEWWWAR 1101

Query:   489 LNNKEGYVPRNLLGLYPRVQP 509
             LN+KEGYVPRNLLGLYPR++P
Sbjct:  1102 LNDKEGYVPRNLLGLYPRIKP 1122

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007417 "central nervous system development" evidence=IMP

GO:0007507 "heart development" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IGI

GO:0010212 "response to ionizing radiation" evidence=IMP

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q62415	ASPP1_MOUSE	No assigned EC number	0.5519	0.5291	0.2502	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	514
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	1e-33
cd11953	57	cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of	2e-26
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	2e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-22
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-21
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	2e-20
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-20
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-17
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	1e-15
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-15
smart00326	56	smart00326, SH3, Src homology 3 domains	2e-14
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	6e-13
pfam00018	47	pfam00018, SH3_1, SH3 domain	1e-12
cd11800	57	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src	2e-11
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	3e-11
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	5e-11
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	6e-11
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	8e-11
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-10
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	4e-10
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	7e-10
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	9e-10
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	9e-10
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	1e-09
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	1e-09
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	1e-09
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	2e-09
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	2e-09
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	3e-09
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	4e-09
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	4e-09
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	7e-09
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	7e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-08
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	1e-08
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	1e-08
cd12024	53	cd12024, SH3_NoxO1_2, Second or C-terminal Src hom	2e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-08
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	2e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-08
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	2e-08
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	2e-08
cd12141	57	cd12141, SH3_DNMBP_C2, Second C-terminal Src homol	2e-08
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	3e-08
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	4e-08
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	4e-08
cd11764	54	cd11764, SH3_Eps8, Src Homology 3 domain of Epider	4e-08
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	4e-08
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	7e-08
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	7e-08
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	8e-08
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	9e-08
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	1e-07
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-07
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	2e-07
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	2e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-07
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	3e-07
cd11973	73	cd11973, SH3_ASEF, Src homology 3 domain of APC-St	3e-07
cd12001	68	cd12001, SH3_BCAR1, Src homology 3 domain of the C	3e-07
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	3e-07
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	3e-07
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	3e-07
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	4e-07
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	4e-07
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	4e-07
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	4e-07
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	4e-07
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	4e-07
cd12003	62	cd12003, SH3_EFS, Src homology 3 domain of CAS (Cr	5e-07
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	6e-07
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	7e-07
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	7e-07
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	7e-07
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	8e-07
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	8e-07
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	8e-07
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	8e-07
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	8e-07
cd11974	54	cd11974, SH3_ASEF2, Src homology 3 domain of APC-S	9e-07
cd11878	54	cd11878, SH3_Bem1p_1, First Src Homology 3 domain	1e-06
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	1e-06
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	1e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	2e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	2e-06
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	2e-06
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	2e-06
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	2e-06
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	3e-06
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	3e-06
cd12000	57	cd12000, SH3_CASS4, Src homology 3 domain of CAS (	3e-06
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	3e-06
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	4e-06
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	5e-06
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	5e-06
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	5e-06
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	5e-06
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	6e-06
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	6e-06
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	6e-06
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	6e-06
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	7e-06
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	7e-06
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	7e-06
cd12012	62	cd12012, SH3_RIM-BP_2, Second Src homology 3 domai	7e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	8e-06
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	8e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
cd11908	56	cd11908, SH3_ITK, Src Homology 3 domain of Interle	1e-05
cd11965	57	cd11965, SH3_ASAP1, Src homology 3 domain of ArfGA	1e-05
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	1e-05
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	1e-05
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	1e-05
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	1e-05
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	1e-05
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	1e-05
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	1e-05
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	1e-05
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	1e-05
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	1e-05
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	2e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-05
cd12002	57	cd12002, SH3_NEDD9, Src homology 3 domain of CAS (	2e-05
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	2e-05
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	2e-05
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	2e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	2e-05
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	2e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	3e-05
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	3e-05
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	3e-05
PHA02798	489	PHA02798, PHA02798, ankyrin-like protein; Provisio	3e-05
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	3e-05
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	4e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	4e-05
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	4e-05
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	4e-05
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	4e-05
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	4e-05
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	4e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	5e-05
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-05
smart00248	30	smart00248, ANK, ankyrin repeats	5e-05
cd11765	51	cd11765, SH3_Nck_1, First Src Homology 3 domain of	5e-05
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	6e-05
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	6e-05
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	6e-05
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	7e-05
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	7e-05
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	9e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-04
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	1e-04
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	1e-04
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-04
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	1e-04
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	1e-04
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	2e-04
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	2e-04
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	2e-04
cd11941	57	cd11941, SH3_ARHGEF37_C2, Second C-terminal Src ho	2e-04
cd12016	54	cd12016, SH3_Tks_2, Second Src homology 3 domain o	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
cd11912	55	cd11912, SH3_Bzz1_1, First Src Homology 3 domain o	3e-04
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	3e-04
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	3e-04
cd11911	55	cd11911, SH3_CIP4-like, Src Homology 3 domain of C	3e-04
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	3e-04
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	3e-04
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	4e-04
cd11788	59	cd11788, SH3_RasGAP, Src Homology 3 domain of Ras	4e-04
cd11888	54	cd11888, SH3_ARHGAP9_like, Src Homology 3 domain o	4e-04
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	5e-04
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	5e-04
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	5e-04
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	6e-04
cd11802	52	cd11802, SH3_Endophilin_B, Src homology 3 domain o	6e-04
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	7e-04
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	7e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	8e-04
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	8e-04
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	9e-04
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	0.001
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	0.001
cd11757	52	cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3	0.001
cd12077	54	cd12077, SH3_Tks5_2, Second Src homology 3 domain	0.001
cd11889	53	cd11889, SH3_Cyk3p-like, Src Homology 3 domain of	0.001
cd12074	53	cd12074, SH3_Tks5_1, First Src homology 3 domain o	0.001
cd11895	58	cd11895, SH3_FCHSD1_2, Second Src Homology 3 domai	0.002
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.002
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	0.002
cd12015	53	cd12015, SH3_Tks_1, First Src homology 3 domain of	0.002
cd11857	55	cd11857, SH3_DBS, Src homology 3 domain of DBL's B	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.002
cd12078	53	cd12078, SH3_Tks4_3, Third Src homology 3 domain o	0.002
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.003
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	0.003
cd11835	54	cd11835, SH3_ARHGAP32_33, Src homology 3 domain of	0.003
cd11885	55	cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 d	0.003
cd11978	56	cd11978, SH3_VAV3_2, C-terminal (or second) Src ho	0.003
cd11886	55	cd11886, SH3_BOI, Src Homology 3 domain of fungal	0.003
cd11810	50	cd11810, SH3_RUSC1_like, Src homology 3 domain of	0.003
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	0.004
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	0.004
cd12079	54	cd12079, SH3_Tks5_3, Third Src homology 3 domain o	0.004

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score =  121 bits (305), Expect = 1e-33
 Identities = 41/57 (71%), Positives = 50/57 (87%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           G VYAL+DYEA N DELSF+ G+ + VLRKGD++E EWWW++LN+KEGYVPRNLLGL
Sbjct: 1   GVVYALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVPRNLLGL 57

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212886 cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of Apoptosis Stimulating of p53 protein 2

 Score =  101 bits (252), Expect = 2e-26
 Identities = 39/57 (68%), Positives = 49/57 (85%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           G VYAL+DYE  + DELSFK G+C+ +LR+ DE+E EWWW++LN+KEGYVPRNLLGL
Sbjct: 1   GVVYALWDYEGESDDELSFKEGDCMTILRREDEDETEWWWARLNDKEGYVPRNLLGL 57

ASPP2 is the full length form of the previously-identified tumor supressor, p53-binding protein 2 (p53BP2). ASPP2 activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). It plays a central role in regulating apoptosis and cell growth; ASPP2-deficient mice show postnatal death. Downregulated expression of ASPP2 is frequently found in breast tumors, lung cancer, and diffuse large B-cell lymphoma where it is correlated with a poor clinical outcome. ASPP2 contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP2 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score =  101 bits (252), Expect = 2e-26
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           G VYAL+DYEA N DELSF+ G+ I +LR+ D++E EWWW++LN+KEGYVP+NLLGL
Sbjct: 1   GMVYALWDYEAQNADELSFQEGDAITILRRKDDSETEWWWARLNDKEGYVPKNLLGL 57

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 92.8 bits (231), Expect = 1e-22
 Identities = 41/100 (41%), Positives = 59/100 (59%), Gaps = 7/100 (7%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+  G LE+V     L++   D +A +++G T LH A   GH +IV+ L++ G DVNA+D
Sbjct: 14  AASNGHLEVVK---LLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARD 70

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
            DG  PLH AA   NL +V+ L++HGA + A    D  T 
Sbjct: 71  KDGNTPLHLAARNGNLDVVKLLLKHGADVNARD-KDGRTP 109

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 32/76 (42%), Positives = 47/76 (61%), Gaps = 1/76 (1%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
           A +++G T LH A   GH ++V+ L++ G DVNA+D+DG  PLH AA   +L +V+ L+E
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 401 HGACIFATTHSDHETA 416
            GA + A    D  T 
Sbjct: 62  KGADVNARDK-DGNTP 76

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 84.2 bits (208), Expect = 2e-20
 Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           G VYAL+DY A   DELSFK G+ + VLRK D    +WWW+ L  +EGYVPRN  GL
Sbjct: 1   GVVYALWDYSAEFPDELSFKEGDMVTVLRK-DGEGTDWWWASLCGREGYVPRNYFGL 56

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 84.2 bits (209), Expect = 5e-20
 Identities = 38/92 (41%), Positives = 51/92 (55%), Gaps = 2/92 (2%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L  A+  G LELV        D +  + +  TALH A   G+ +IV+ L++ G DVNA+D
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
            DG   LH AA   NL +V+ L+EHGA I   
Sbjct: 59  KDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 33/83 (39%), Positives = 50/83 (60%), Gaps = 6/83 (7%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+  G LE+V     L++   D +A + +G T LH A   G+ D+V+ L++ G DVNA+D
Sbjct: 47  AAKNGHLEIV---KLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARD 103

Query: 377 SDGWMPLHCAASCNNLAMVRFLV 399
            DG  PLH AA   +L +V+ L+
Sbjct: 104 KDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 70.6 bits (174), Expect = 1e-15
 Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRN 499
             ALYDYEA + DELSFK G+ I VL K D+    WW       +EG  P N
Sbjct: 2   ARALYDYEAQDDDELSFKKGDIITVLEKDDDG---WWEGELNGGREGLFPAN 50

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 69.2 bits (170), Expect = 4e-15
 Identities = 21/52 (40%), Positives = 33/52 (63%)

Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
           TALH A  +G  ++V++L++ G D+N  D DG   LH AA   NL +++ L+
Sbjct: 3   TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 67.2 bits (165), Expect = 2e-14
 Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRN 499
           V ALYDY A + DELSFK G+ I VL K D+    WW       KEG  P N
Sbjct: 5   VRALYDYTAQDPDELSFKKGDIITVLEKSDDG---WWKGRLGRGKEGLFPSN 53

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 63.0 bits (154), Expect = 6e-13
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           ALYDYEA   D+LSFK G+ + +L   D    +WW        KEGY+P N
Sbjct: 4   ALYDYEARTDDDLSFKKGDRLQILDDSDG---DWWLARHLSTGKEGYIPSN 51

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 62.2 bits (152), Expect = 1e-12
 Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS--KLNNKEGYVP 497
           ALYDY A   DELSFK G+ IIVL K D+     WW       KEG +P
Sbjct: 2   ALYDYTAREPDELSFKKGDIIIVLEKSDDG----WWKGRLKGGKEGLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212734 cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 58.9 bits (143), Expect = 2e-11
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLG 502
            YALY +EA +  ELS   G+ + VL K D +   EWW  +   K+GYVP N L 
Sbjct: 2   YYALYTFEARSPGELSVTEGQVVTVLEKHDLKGNPEWWLVEDRGKQGYVPSNYLA 56

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 58.6 bits (142), Expect = 3e-11
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 502
             A+ D+ A +  +LSF++G+ ++VLRK      +WWW++ N   GY+P + L 
Sbjct: 2   YVAIADFVATDDSQLSFESGDKLLVLRK---PSVDWWWAEHNGCCGYIPASHLH 52

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 57.5 bits (139), Expect = 5e-11
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALYD+     ++LSF+ G+ I+V    D    EW   +LN +EG  PR 
Sbjct: 4   ALYDFTGETEEDLSFQRGDRILVTEHLDA---EWSRGRLNGREGIFPRA 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 57.3 bits (139), Expect = 6e-11
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
            A+ DYEA   DE+S + GE + VL K   N+  WW+ +  +KEG+VP + L
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEK---NDSGWWYVRKGDKEGWVPASYL 51

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 57.0 bits (138), Expect = 8e-11
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY Y+A +TDELSF  G+ I +L+   E+   WW  +L  KEG  P N
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILK---EDPSGWWTGRLRGKEGLFPGN 49

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCA 386
           D +A +  G T LH A   G  ++V++L++ G D+N +DSDG   L  A
Sbjct: 8   DLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 499
           V ALYDY AN +DEL+   G+ I VL K ++N   WW+  L N ++GY P N
Sbjct: 2   VVALYDYTANRSDELTIHRGDIIRVLYKDNDN---WWFGSLVNGQQGYFPAN 50

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 54.3 bits (131), Expect = 7e-10
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V AL+ Y A N DELSF+ G+ I VL K D    +WW  +LN + G  P N
Sbjct: 2   VIALFPYTAQNEDELSFQKGDIINVLSKDDP---DWWRGELNGQTGLFPSN 49

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
            L+DYEA N DEL+ + G+ + +L K D  ++ WW  +LN K G  P N
Sbjct: 4   VLFDYEAENEDELTLREGDIVTILSK-DCEDKGWWKGELNGKRGVFPDN 51

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 53.8 bits (130), Expect = 9e-10
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)

Query: 449 VY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V+ ALYDYEA + DELSF+ G+ + +  K D N   WW +    K G +P N
Sbjct: 1   VFRALYDYEAQHPDELSFEEGDLLYISDKSDPN---WWKATCGGKTGLIPSN 49

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           AL+ YE  N DEL FK GE I+++ K D  E  WW  +LN KEG  P N
Sbjct: 6   ALFHYEGTNEDELDFKEGEIILIISK-DTGEPGWWKGELNGKEGVFPDN 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 54.0 bits (130), Expect = 1e-09
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYD+EA   +EL+FK GE I VL   D N   WW    +  EG  P N
Sbjct: 3   VRALYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGSNHRGEGLFPAN 50

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 53.8 bits (130), Expect = 1e-09
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYD+      EL F+ G+ I VL   D +   WW  +L  + G  P N
Sbjct: 2   VQALYDFNPQEPGELEFRRGDIITVLDSSDPD---WWKGELRGRVGIFPAN 49

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYDYE   +DELSFK G+  I+ +  +E+E+ W   +L+ + G  P N
Sbjct: 2   VRALYDYEGQESDELSFKAGD--ILTKLEEEDEQGWCKGRLDGRVGLYPAN 50

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY Y AN  DELS + G+ I V  K D+    WW  +LN K+G  P  
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDG---WWLGELNGKKGIFPAT 49

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYDY A+  DELSF+ G+ I V +K D+    W+   LN   G  P N
Sbjct: 2   VVALYDYTADKDDELSFQEGDIIYVTKKNDDG---WYEGVLNGVTGLFPGN 49

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 51.9 bits (125), Expect = 4e-09
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW 485
           V ALYD +A+N DEL+F  GE I+V  + D+   EWW
Sbjct: 2   VRALYDCQADNDDELTFSEGEIIVVTGEEDD---EWW 35

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 52.3 bits (125), Expect = 4e-09
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
             V A+YDY ANN DELSF  G+ I VL K D    +WW  ++N   G  P N + +
Sbjct: 1   CQVIAMYDYTANNEDELSFSKGQLINVLNKDDP---DWWQGEINGVTGLFPSNYVKM 54

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 51.5 bits (124), Expect = 7e-09
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 500
           V A +++E  N DELSF  G+ I V +     E  WW   LN K G+ P N 
Sbjct: 2   VRAKFNFEGTNEDELSFDKGDIITVTQV---VEGGWWEGTLNGKTGWFPSNY 50

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
            LYDY A   DELS   G+ + V+ KG++    WW  + N ++G VP   L  
Sbjct: 4   VLYDYTAQEDDELSISKGDVVAVIEKGEDG---WWTVERNGQKGLVPGTYLEK 53

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G LE+V     L++   D +A + +G TALH A   G+ +IV+ L++ G D+N
Sbjct: 32  LHLAARNGNLEIVK---LLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Query: 374 AQD 376
            +D
Sbjct: 89  LKD 91

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 24/76 (31%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 338 DPSAANDEGITALHNAI--CAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN--NLA 393
           + +A ++ GIT L  AI   +  + IV +L+  G +VN ++SDG   LH     N  +L 
Sbjct: 98  NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK 157

Query: 394 MVRFLVEHGACIFATT 409
           +++ L++ G  I A  
Sbjct: 158 ILKLLIDKGVDINAKN 173

Length = 422

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
             +D+ A+  DELSFK G+ + +L     ++  W+ ++LN +EGYVP+N +
Sbjct: 4   GKFDFTASGEDELSFKKGDVLKIL----SSDDIWFKAELNGEEGYVPKNFV 50

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALYD+E  N  EL FK G+ I +  + DEN   W+   +N + G+ P N
Sbjct: 5   ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMVNGQSGFFPVN 50

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212957 cd12024, SH3_NoxO1_2, Second or C-terminal Src homology 3 domain of NADPH oxidase (Nox) Organizing protein 1

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           YA   YEA   DELS   G  + VL+K D     WW  + N + GYVP   L
Sbjct: 3   YATRAYEAQKEDELSVPAGVVVEVLQKSD---NGWWLIRYNGRAGYVPSMYL 51

Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1 is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. NoxO1 contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of NoxO1. The tandem SH3 domains of NoxO1 interact with the PRR of p22phox, which also complexes with Nox1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           +G T LH A   GH ++V+ L++ G DVNA+D
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 50.5 bits (121), Expect = 2e-08
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           ALYD+      +L+F+ G+ I +L+K D    +WW  ++  +EG  P N +
Sbjct: 4   ALYDFAGEQPGDLAFQKGDIITILKKSDSQN-DWWTGRIGGREGIFPANYV 53

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 36/170 (21%), Positives = 64/170 (37%), Gaps = 9/170 (5%)

Query: 242 PTTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSG 301
           P+       N       +        S +  + +D+ +N     +     +  +  LK  
Sbjct: 3   PSLSALLLINKCFLDLLLVALLLLL-SLDLSNPSDKKLNLYLELALLPAASLSELLLKLI 61

Query: 302 KLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAI-----CA 356
                     D    L  A+ +G+ ++V        D +A + +G T LH A        
Sbjct: 62  VDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPE 121

Query: 357 GHFDIVRFLVQFG---CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           G+ ++ + L++ G      N +D DG  PLH AA   +  +V  L+E GA
Sbjct: 122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171

Length = 235

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
            ++DY A + +ELS K G+ + VL K D     WW  +   + G VP + +
Sbjct: 4   VIFDYVATDPNELSLKKGDVVKVLDKDDNG---WWEGERGGRRGLVPSSYV 51

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY+YE     +LSFK G+ I++ ++ DEN   W+  + N K+G+ P +
Sbjct: 4   ALYNYEGKEPGDLSFKKGDIILLRKRIDEN---WYHGECNGKQGFFPAS 49

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213017 cd12141, SH3_DNMBP_C2, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDEN-EREWWWSKLNNKEGYVPRNLLG 502
           YA+Y ++A + +ELS    + + +L   D    +EWW ++ N ++GYVP N + 
Sbjct: 3   YAVYTFKARSPNELSVSANQRVRILEFSDLTGNKEWWLAEANGQKGYVPSNYIR 56

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A +D++A   DELSFK G  + VL   D  +  W+ ++L+ KEG +P+N
Sbjct: 4   AKHDFKATAEDELSFKKGSILKVLNMED--DPNWYKAELDGKEGLIPKN 50

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 10/57 (17%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK------EGYVPRNLL 501
           AL+D++A   +ELSF+ G+   +  +      +WW +   ++      +G+VP N L
Sbjct: 4   ALWDFKARGDEELSFQAGDQFRIAER----SGDWWTALKLDRAGGVVAQGFVPNNYL 56

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           AL+D+   + +EL FK G+ I VL   D ++++WWW  + ++EG+ P
Sbjct: 4   ALWDHVTMDPEELGFKAGDVIEVL---DMSDKDWWWGSIRDEEGWFP 47

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212698 cd11764, SH3_Eps8, Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 9/56 (16%)

Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLY 504
           LYD+ A N+ ELS   GE + VL    ++ R+WW  K+ N   + GYVP N+L  Y
Sbjct: 5   LYDFTARNSKELSVLKGEYLEVL----DDSRQWW--KVRNSRGQVGYVPHNILEPY 54

This group is composed of Eps8 and Eps8-like proteins including Eps8-like 1-3, among others. These proteins contain N-terminal Phosphotyrosine-binding (PTB), central SH3, and C-terminal effector domains. Eps8 binds either Abi1 (also called E3b1) or Rab5 GTPase activating protein RN-tre through its SH3 domain. With Abi1 and Sos1, it becomes part of a trimeric complex that is required to activate Rac. Together with RN-tre, it inhibits the internalization of EGFR. The SH3 domains of Eps8 and similar proteins recognize peptides containing a PxxDY motif, instead of the classical PxxP motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 49.3 bits (117), Expect = 4e-08
 Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 2/51 (3%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           A YD++A   DELSFK G+ + VL   +E ++ W+ ++LN K+G++P+N +
Sbjct: 5   AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKNYI 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 48.7 bits (116), Expect = 7e-08
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRK-----GDENEREWWWSKLNNKEGYVPRN 499
           AL+DY+A   DEL+ + G+ + VL K     GDE    WW  K+ +K G  P N
Sbjct: 4   ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEG---WWTGKIGDKVGIFPSN 54

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           L+DY     DEL+ K G+ I V+ K  E+E  WW  +LN + G+ P N
Sbjct: 5   LFDYNPVAPDELALKKGDVIEVISKETEDE-GWWEGELNGRRGFFPDN 51

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK---EGYVPRNLL 501
            LY YEA   DEL+   GE + V+  GD +     W K  NK    GYVP N L
Sbjct: 6   VLYSYEAQRPDELTITEGEELEVIEDGDGDG----WVKARNKSGEVGYVPENYL 55

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 48.4 bits (115), Expect = 9e-08
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           ALY ++A   D+L F  GE I V+   D++  EWW  K+  K GY P N +
Sbjct: 4   ALYRFKALEKDDLDFHPGERITVI---DDSNEEWWRGKIGEKTGYFPMNFI 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
            L+ Y   N DEL  K G+ I VL    E E  WW  KLN K G  P N
Sbjct: 4   VLFSYTPQNEDELELKVGDTIEVL---GEVEEGWWEGKLNGKVGVFPSN 49

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 47.7 bits (113), Expect = 1e-07
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V ALY Y+  + D+LSFK GE + V+    E   EWW ++     KEG++P N
Sbjct: 2   VVALYPYDGIHEDDLSFKKGEKLKVI----EEHGEWWKARSLTTKKEGFIPSN 50

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 46.8 bits (112), Expect = 2e-07
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACIFATTH 410
           DG  PLH AA   +L +V+ L+E GA + A   
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNKEGYVP 497
           V ALYDYEA + +ELSF  G  I +LRK D    + WW  + N + G  P
Sbjct: 2   VRALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFP 51

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYD+EA   DEL F +G+ I VL   D +   WW  +L+ K G  P N
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVL---DSSNPSWWKGRLHGKLGLFPAN 49

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 17/114 (14%)

Query: 304 GKKRCVSFDPLALLLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAG--- 357
             +RC  F PL L L          V+K   L+K   D +A +  G T LH  +      
Sbjct: 78  APERC-GFTPLHLYL---YNATTLDVIKL--LIKAGADVNAKDKVGRTPLH--VYLSGFN 129

Query: 358 -HFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN--LAMVRFLVEHGACIFAT 408
            +  ++R L++ G DVNA D  G  PL       N  + ++R L++ GA ++A 
Sbjct: 130 INPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV 183

Length = 471

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 497
            LYD++A + DEL+ K G+ + +L   D+  ++WW  +     KEG VP
Sbjct: 5   VLYDFDAQSDDELTVKEGDVVYILD--DKKSKDWWMVENVSTGKEGVVP 51

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212906 cd11973, SH3_ASEF, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor

 Score = 47.7 bits (113), Expect = 3e-07
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 9/71 (12%)

Query: 439 EKLGI---LNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK 492
           E+L I   +++G+V    AL+D+   +  EL FK G+ I V+   D   +EWWW ++ + 
Sbjct: 4   EQLAINELISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNKEWWWGRVLDS 60

Query: 493 EGYVPRNLLGL 503
           EG+ P + + L
Sbjct: 61  EGWFPASFVRL 71

ASEF, also called ARHGEF4, exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli). GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF can activate Rac1 or Cdc42. Truncated ASEF, which is found in colorectal cancers, is constitutively active and has been shown to promote angiogenesis and cancer cell migration. ASEF contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 73

>gnl|CDD|212934 cd12001, SH3_BCAR1, Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1

 Score = 47.3 bits (112), Expect = 3e-07
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLYPR 506
           ALYD  A + DELSF+ G+ + VL +  +    WW   L+ ++G VP N    L+G+Y +
Sbjct: 7   ALYDNVAESPDELSFRKGDIMTVLERDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDK 66

BCAR1, also called p130cas or CASS1, is the founding member of the CAS family of scaffolding proteins and was originally identified through its ability to associate with Crk. The name BCAR1 was designated because the human gene was identified in a screen for genes that promote resistance to tamoxifen. It is widely expressed and its deletion is lethal in mice. It plays a role in regulating cell motility, survival, proliferation, transformation, cancer progression, and bacterial pathogenesis. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           V  +YDY A N DEL+F  G+ I VL K D    +WW  +LN + G  P N + L
Sbjct: 3   VIGMYDYTAQNDDELAFSKGQIINVLNKEDP---DWWKGELNGQVGLFPSNYVKL 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 46.9 bits (111), Expect = 3e-07
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRK-----GDENEREWWWSKLNNKEGYVPRN 499
           ALYDYEA+  DELS + G+ + VL +     GD+    WW  K+ ++ G  P N
Sbjct: 4   ALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDG---WWAGKIRHRLGIFPAN 54

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 18/53 (33%), Positives = 36/53 (67%), Gaps = 2/53 (3%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           ALY ++A  +DEL F+ G+ + +L    E+++ W+ ++L  +EGY+P+N + +
Sbjct: 4   ALYSFQATESDELPFQKGDILKILNM--EDDQNWYKAELQGREGYIPKNYIKV 54

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVPRNLL 501
           ALYD+  +  +ELS K  + + +++K    +  WW +K  +  KEG+VP   L
Sbjct: 4   ALYDFAGSVANELSLKKDDIVYIVQK---EDNGWWLAKKLDESKEGWVPAAYL 53

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
            L+D   N  DELSFK G+ I ++ K + +   WW  +LN K G VP++ L
Sbjct: 4   GLWDCSGNEPDELSFKRGDLIYIISK-EYDSFGWWVGELNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 46.9 bits (111), Expect = 4e-07
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           V ALYD+EA   +EL+FK GE IIVL   D+++  WW  + +   G  P N +
Sbjct: 4   VRALYDFEAVEDNELTFKHGEIIIVL---DDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 8/54 (14%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRK-----GDENEREWWWSKLNNKEGYVPRN 499
           A++DYEA+  DEL+ + G+ + VL K     GDE    WW  K+N++ G  P N
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEG---WWTGKINDRVGIFPSN 54

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVP 497
           V AL+D+  N+ ++L FK GE + V+RK +E     WW+  N+  K G +P
Sbjct: 3   VRALFDFPGNDDEDLPFKKGEILTVIRKPEEQ----WWNARNSEGKTGMIP 49

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALYD+   N DELSFK G+ I  L   DE   EW   +L  K G  P+N
Sbjct: 4   ALYDFTGENEDELSFKAGDIITELESIDE---EWMSGELRGKSGIFPKN 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212936 cd12003, SH3_EFS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate

 Score = 46.4 bits (110), Expect = 5e-07
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           ALYD  A + +ELSF+ G+ ++VL++   +   WW   L+ ++G  P N L L P
Sbjct: 5   ALYDNAAESPEELSFRRGDVLMVLKREHGSLPGWWLCSLHGQQGIAPANRLRLLP 59

EFS is also called HEFS, CASS3 (Cas scaffolding protein family member 3) or SIN (Src-interacting protein). It was identified based on interactions with the Src kinases, Fyn and Yes. It plays a role in thymocyte development and acts as a negative regulator of T cell proliferation. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 7/77 (9%)

Query: 334 RLVKDPSAANDEGI---TALH---NAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA 387
           RL+   +  N  G    T LH   +       DIVR L++ G DVNA +  G+ PLH   
Sbjct: 32  RLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYL 91

Query: 388 SCNN-LAMVRFLVEHGA 403
                L +++ L++ GA
Sbjct: 92  YNATTLDVIKLLIKAGA 108

Length = 471

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 46.2 bits (109), Expect = 7e-07
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
           A++D+      EL+FK G+ I VL   D + ++WWW +++++EG+ P + + L+
Sbjct: 9   AVWDHVTMANRELAFKAGDVIKVL---DASNKDWWWGQIDDEEGWFPASFVRLW 59

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 45.7 bits (108), Expect = 7e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           V A+YD+EA   +EL+FK G+ I +L   D N   WW  +     G  P N +
Sbjct: 3   VRAIYDFEAAEDNELTFKAGDIITILDDSDPN---WWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 46.1 bits (110), Expect = 7e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 451 ALYDYE-ANNTDELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 499
           ALYD+   N   ELS K G+ + VL K D    + EWW  +  + + G+ P N
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSN 56

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 47.8 bits (114), Expect = 8e-07
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA---AVKC 420
           NA+D DG  PLH AAS  +L +V+ L+E+GA + A  + D  T    A K 
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKN 50

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 45.6 bits (108), Expect = 8e-07
 Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           V ALYDY+  +  E+S K G+ + +L   + + ++WW  ++N+++G+VP   +
Sbjct: 2   VVALYDYQEKSPREVSMKKGDILTLL---NSSNKDWWKVEVNDRQGFVPAAYV 51

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 45.7 bits (108), Expect = 8e-07
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 9/57 (15%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           V ALYDY+    DELSFK G+ +  L   DE+E+ W   +L++ +       +GLYP
Sbjct: 3   VRALYDYDGQEQDELSFKAGDELTKL--EDEDEQGWCKGRLDSGQ-------VGLYP 50

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 45.6 bits (108), Expect = 8e-07
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
            V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN
Sbjct: 1   YVQALFDFDPQEDGELGFRRGDFIEVMDNSDPN---WWKGACHGQTGMFPRN 49

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 45.8 bits (109), Expect = 8e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           ALYD  A + DEL+F+ G+ + VL +       WW   L  ++G  P N L L
Sbjct: 4   ALYDNVAESPDELAFRRGDILTVLEQNTAGLEGWWLCSLRGRQGIAPGNRLKL 56

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212907 cd11974, SH3_ASEF2, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor 2

 Score = 45.4 bits (107), Expect = 9e-07
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           AL+D+   +  EL+FK G+ I VL   + + ++WWW +  ++E + P + + L
Sbjct: 5   ALWDHVTMDDQELAFKAGDVIRVL---EASNKDWWWGRNEDREAWFPASFVRL 54

ASEF2, also called Spermatogenesis-associated protein 13 (SPATA13), is a GEF that localizes with actin at the leading edge of cells and is important in cell migration and adhesion dynamics. GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF2 can activate both Rac 1 and Cdc42, but only Rac1 activation is necessary for increased cell migration and adhesion turnover. Together with APC (adenomatous polyposis coli) and Neurabin2, a scaffold protein that binds F-actin, it is involved in regulating HGF-induced cell migration. ASEF2 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212811 cd11878, SH3_Bem1p_1, First Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--WSKLNNKEGYVPRN 499
           ALYDY A    ELSF  G+   V+  G+E++ EW+   + +  K G VP++
Sbjct: 4   ALYDYRAQTPGELSFSKGDFFHVI--GEEDQGEWYEATNPVTGKRGLVPKS 52

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 45.4 bits (107), Expect = 1e-06
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVPRN 499
           ALYDYEA  T++LSFK GE   ++   +  E +WW ++     K GY+P N
Sbjct: 5   ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKNGYIPSN 52

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 45.3 bits (107), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           L+ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L
Sbjct: 5   LFPYEAQNEDELTIKEGDIVTLISK-DCIDAGWWEGELNGRRGVFPDNFVKL 55

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           ALYDY+A   +E+SF  G+ I  + + DE    WW        G   +   GL+P
Sbjct: 4   ALYDYQAAEDNEISFVEGDIITQIEQIDEG---WW-------LGVNAKGQKGLFP 48

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V   +DY+A   DEL+ K G+ I  ++K +E    WW   LN K G  P N
Sbjct: 2   VIVEFDYDAEEPDELTLKVGDIITNVKKMEEG---WWEGTLNGKRGMFPDN 49

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 44.4 bits (105), Expect = 2e-06
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 498
           V AL+ YEA+  ++L F+ G+ I+VL K +E   +W   +   K G  P 
Sbjct: 2   VVALFSYEASQPEDLEFQKGDVILVLSKVNE---DWLEGQCKGKIGIFPS 48

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNKEGYVPRN 499
           V A+YDY     DELSFK GE   +L+  DE+E+ W          G  P N
Sbjct: 4   VRAVYDYTGQEPDELSFKAGE--ELLKVEDEDEQGWCKGVTDGGAVGLYPAN 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 9/57 (15%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           V ALYDY     DELSFK GE +  L+ G+E+E+ W   +L +         +GLYP
Sbjct: 4   VRALYDYTGQEADELSFKAGEEL--LKIGEEDEQGWCKGRLLSGR-------IGLYP 51

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           A Y++ A+   ELSF+ G+ I + R+ DEN   W+  ++  ++G  P
Sbjct: 4   AKYNFNADTGVELSFRKGDVITLTRRVDEN---WYEGRIGGRQGIFP 47

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY +EA N DE+SF+ G+ I V       E  W   +L  K G+ P N
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDES-QVAEPGWLAGELKGKTGWFPAN 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212933 cd12000, SH3_CASS4, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4

 Score = 44.1 bits (104), Expect = 3e-06
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           ALYD +A+ +DEL+F+ G+ + VL +       WW   L+ ++G  P N L L
Sbjct: 5   ALYDNKADCSDELAFRRGDILTVLEQNVPGSEGWWKCLLHGRQGLAPANRLQL 57

CASS4, also called HEPL (HEF1-EFS-p130Cas-like), localizes to focal adhesions and plays a role in regulating FAK activity, focal adhesion integrity, and cell spreading. It is most abundant in blood cells and lung tissue, and is also found in high levels in leukemia and ovarian cell lines. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A YD+ A +  +LSF+ G+ I VL   D N   WW  +++ + G+ PRN
Sbjct: 2   VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPN---WWRGRISGRVGFFPRN 49

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 501
           V ALY YE ++  +L F+ GE + +L    E   EWW ++     +EG++P N +
Sbjct: 2   VVALYSYEPSHDGDLGFEKGEKLRIL----EQSGEWWKAQSLTTGQEGFIPFNFV 52

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           ALY YE     +L F  G+ II+ RK DEN   W+  +LN   G++P
Sbjct: 5   ALYSYEGKEPGDLKFNKGDIIILRRKVDEN---WYHGELNGCHGFLP 48

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V ALYDY   N  +L  + GE  ++L + +     WW ++  N +EGY+P N
Sbjct: 3   VVALYDYTPMNAQDLQLRKGEEYVILEESNLP---WWRARDKNGREGYIPSN 51

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 451 ALYDYEANNTDE---LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           ALYD+E  + DE   L+FK G+ I V+R+ DEN   W   +L +K G  P
Sbjct: 4   ALYDFEMKDEDEKDCLTFKKGDVITVIRRVDEN---WAEGRLGDKIGIFP 50

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 43.3 bits (102), Expect = 5e-06
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
            L+D   +N DELSF+ G+ I +L K + N   WW  +LN   G VP++ L
Sbjct: 4   GLWDCFGDNPDELSFQRGDLIYILSK-EYNMYGWWVGELNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 43.1 bits (102), Expect = 6e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVP 497
           V ALYD+++  + ELS + GE + + R   ++  + W    N+  + G  P
Sbjct: 2   VRALYDFDSQPSGELSLRAGEVLTITR---QDVGDGWLEGRNSRGEVGLFP 49

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           V ALYDYE    DELSF  G  I +L K ++++  +W  + N + G  P  L+
Sbjct: 2   VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 54

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 43.0 bits (102), Expect = 6e-06
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
               ++YEA   DELS + G+ ++VL K  +    WW  + N + G+ P N
Sbjct: 2   AVVKFNYEAQREDELSLRKGDRVLVLEKSSDG---WWRGECNGQVGWFPSN 49

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           ALYDY+A + DE+SF   + I  +   DE    WW      K G  P N + L
Sbjct: 4   ALYDYQAADDDEISFDPDDIITNIEMIDEG---WWRGVCRGKYGLFPANYVEL 53

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 43.3 bits (102), Expect = 7e-06
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVPRN 499
           V A+YD++     +L  +TGE  ++L K D +    WW   +   KEGY+P N
Sbjct: 3   VVAMYDFQPTEPHDLRLETGEEYVILEKNDVH----WWKARDKYGKEGYIPSN 51

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-------NKEGYVPRN 499
           ALYDYE    DEL+ +  + + +L K D+   +WW  KL           G VP  
Sbjct: 4   ALYDYEPQTEDELTIQEDDILYLLEKSDD---DWWKVKLKVNSSDDDEPVGLVPAT 56

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 12/30 (40%), Positives = 20/30 (66%)

Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNA 374
           +G T LH A   G+ ++V+ L++ G D+NA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADINA 30

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|212945 cd12012, SH3_RIM-BP_2, Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 43.0 bits (102), Expect = 7e-06
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)

Query: 451 ALYDYEAN----NTD----ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 500
           AL+DY+      N D    EL FK G+ I V   GD++   ++  ++N + G VP N+
Sbjct: 4   ALFDYDPLTMSPNPDAAEEELPFKEGQLIKVY--GDKDADGFYLGEINGRRGLVPCNM 59

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 42.7 bits (101), Expect = 8e-06
 Identities = 20/53 (37%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 365 LVQFG-CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           L++ G  D+NA D +G  PLH AA    L +V++L++ G  +     SD  TA
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRD-SDGLTA 52

Length = 56

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.4 bits (115), Expect = 8e-06
 Identities = 26/69 (37%), Positives = 34/69 (49%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           DP+  + +G T LH A   GH  +VR L++FG D    D DG  PL  A       +V+ 
Sbjct: 107 DPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQL 166

Query: 398 LVEHGACIF 406
           L  H  C F
Sbjct: 167 LSRHSQCHF 175

Length = 664

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 37/154 (24%), Positives = 62/154 (40%), Gaps = 14/154 (9%)

Query: 265 SDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEG 324
           S  S  +    ++        +    ++   S     KL     ++  P A L +  L+ 
Sbjct: 1   SKPSLSALLLINKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKL 60

Query: 325 ELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLH 384
            ++         +  +A + +G   LH+A   G   IV+ L+  G DVNA+D+DG  PLH
Sbjct: 61  IVD---------RHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLH 111

Query: 385 CAASCNNL-----AMVRFLVEHGACIFATTHSDH 413
            AA   N       + + L+E GA +      D 
Sbjct: 112 LAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Length = 235

>gnl|CDD|212841 cd11908, SH3_ITK, Src Homology 3 domain of Interleukin-2-inducible T-cell Kinase

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 501
           V ALYDY+ N+  EL+ +  E   +L   D +E  WW  +  N  EGYVP + L
Sbjct: 3   VIALYDYQTNDPQELALRYNEEYHLL---DSSEIHWWRVQDKNGHEGYVPSSYL 53

ITK (also known as Tsk or Emt) is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. ITK is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, ITK plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, ITK is crucial for the development of T-helper(Th)2 effector responses. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212898 cd11965, SH3_ASAP1, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 1

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 8/57 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           V  +YD +A+N DEL+F  GE IIV   G+E++ EWW   + + EG   R   G++P
Sbjct: 2   VKTIYDCQADNDDELTFVEGEVIIV--TGEEDQ-EWW---IGHIEGQPERK--GVFP 50

ASAP1 is also called DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6. However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 502
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N + 
Sbjct: 5   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 55

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           +DY+A + DEL+   G+ I  ++K D     WW  ++  + G  P N +
Sbjct: 6   FDYKAQHEDELTITVGDIITKIKKDDGG---WWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V A YD+  +N  +L  K GE + VL+     + EWW +K     KEGY+P N
Sbjct: 2   VIAQYDFVPSNERDLQLKKGEKLQVLKS----DGEWWLAKSLTTGKEGYIPSN 50

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A+YDY  +  DELSF+ G  I V++K D+    W+   +N   G  P N
Sbjct: 5   VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGN 52

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
            V ALYDYEA   DE+S + G+ I V+R  D +   W + ++N  +G  P +
Sbjct: 1   YVEALYDYEAQGDDEISIRVGDRIAVIRGDDGS--GWTYGEINGVKGLFPTS 50

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
           ALYD+++   + LSF  GE  ++L + + +    WW  +  + + GYVP N +
Sbjct: 4   ALYDFKSAEPNTLSFSEGETFLLLERSNAH----WWLVTNHSGETGYVPANYV 52

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRN 499
            V ALY +   N +ELSF+ GE + ++ K  E++ +WW ++      G VPRN
Sbjct: 1   VVVALYPFTGENDEELSFEKGERLEIIEK-PEDDPDWWKARNALGTTGLVPRN 52

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW-WSKLNNKEGYVPRN 499
           V ALY + ++N +EL+F+ GE + V+ K  EN+ EWW   K N + G VP+N
Sbjct: 3   VQALYPFSSSNDEELNFEKGEVMDVIEK-PENDPEWWKCRKANGQVGLVPKN 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           ALYDY+    DE+SF   E I  +   DE    WW    +   G  P N + L
Sbjct: 5   ALYDYQGEGDDEISFDPQETITDIEMVDEG---WWKGTCHGHRGLFPANYVEL 54

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALY +E     +LSF+ G+ I VL + D ++ +WW  +L  + G  P N
Sbjct: 2   VTALYSFEGQQPCDLSFQAGDRITVLTRTD-SQFDWWEGRLRGRVGIFPAN 51

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 19/65 (29%), Positives = 32/65 (49%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             +  G T LH A+   + + V++L+  G + N  +  G  PLH A   NN  + + L+ 
Sbjct: 187 IKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN 246

Query: 401 HGACI 405
           +G  I
Sbjct: 247 NGPSI 251

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.9 bits (112), Expect = 2e-05
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 3/86 (3%)

Query: 334 RLVKDPSAANDEGITALHNA--ICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN 391
           R   DP+A +  G T LH+     +    +V  L+  G  +NA++  G  PLH AA  NN
Sbjct: 210 RAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNN 269

Query: 392 LAMVRFLVEHGACIFATTHSDHETAA 417
               R L+  GA I A + SD  T  
Sbjct: 270 PRACRRLIALGADINAVS-SDGNTPL 294

Length = 471

>gnl|CDD|212935 cd12002, SH3_NEDD9, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Neural precursor cell Expressed, Developmentally Down-regulated 9

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           ALYD      +EL+F+ G+ + V+ +       WW   L+ ++G  P N L L
Sbjct: 4   ALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIAPGNRLKL 56

NEDD9 is also called human enhancer of filamentation 1 (HEF1) or CAS-L (Crk-associated substrate in lymphocyte). It was first described as a gene predominantly expressed in early embryonic brain, and was also isolated from a screen of human proteins that regulate filamentous budding in yeast, and as a tyrosine phosphorylated protein in lymphocytes. It promotes metastasis in different solid tumors. NEDD9 localizes in focal adhesions and associates with FAK and Abl kinase. It also interacts with SMAD3 and the proteasomal machinery which allows its rapid turnover; these interactions are not shared by other CAS proteins. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           ALY+YE     +L F  G+ II+ R+ DEN   W+  ++N   G+ P N +
Sbjct: 5   ALYNYEGKEPGDLKFSKGDIIILRRQVDEN---WYHGEVNGIHGFFPTNFV 52

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A+Y YE+N   +L+F+ G+ I+V +K    + +WW   + +K G  P N
Sbjct: 4   AMYTYESNEQGDLTFQQGDVILVTKK----DGDWWTGTVGDKTGVFPSN 48

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 47.0 bits (112), Expect = 2e-05
 Identities = 46/180 (25%), Positives = 72/180 (40%), Gaps = 40/180 (22%)

Query: 258 DIKEDKTSDFSTESPDQTDR-VINSSPSDSNNQEIAEI-KSALKSGKLGKKRCVSFDPLA 315
           D++E K  +     PD+  R  +  +  ++ N E+ E+  +    G +G           
Sbjct: 36  DLEEPKKLNI--NCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGD---------T 84

Query: 316 LLLDASLE--GELELVM----KTARLVKDPSAANDE-------GITALHNAICAGHFDIV 362
           LL   SLE    +E ++       R       AND+       GITALH A    +++IV
Sbjct: 85  LLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIV 144

Query: 363 RFLVQFGCDVNA----------QDSD----GWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
           + L++ G  V A          Q  D    G  PL+ AA   + ++V  L E  A I   
Sbjct: 145 KLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTA 204

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 46.5 bits (110), Expect = 2e-05
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
           + E  T LH AI  G  + ++ L ++G DVN +D +G  P+H A   N   +++ L+E G
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 403 A 403
           A
Sbjct: 181 A 181

Length = 434

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 501
           AL D++A    +LSFK GE + ++ K       WW ++      G VP+  L
Sbjct: 4   ALSDFQAEQEGDLSFKKGEVLRIISK---RADGWWLAENSKGNRGLVPKTYL 52

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 499
              ALY + A   + LSF  G+ I VL + +     WW+ +L   +EG+ P++
Sbjct: 1   TATALYPWRAKKENHLSFAKGDIITVLEQQE----MWWFGELEGGEEGWFPKS 49

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 15/26 (57%), Positives = 18/26 (69%)

Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGA 403
           DG  PLH AA   NL +V+ L+EHGA
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGA 26

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 451 ALYDYEAN----NTD---ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           AL+DY+      N D   ELSF+ G+ I V   G+ +E  +++ +LN + G VP N L
Sbjct: 4   ALFDYDPRESSPNVDAEVELSFRAGDIITVF--GEMDEDGFYYGELNGQRGLVPSNFL 59

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 41.5 bits (97), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           A+ DYE ++  E++ KTG+ + V+ K   +E  WW+ +L  K G+VP + L
Sbjct: 4   AIADYEKSSKSEMALKTGDVVEVVEK---SENGWWFCQLKAKRGWVPASYL 51

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional

 Score = 46.0 bits (109), Expect = 3e-05
 Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 4/64 (6%)

Query: 348 TALHNAICAGH-FDIVRFLVQFGCDVNAQDSDGWMPLHCAAS---CNNLAMVRFLVEHGA 403
           T L N     H  DIV+ L++ G D+N ++SDG  PL+C  S    NNL ++ F++E+GA
Sbjct: 77  TILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGA 136

Query: 404 CIFA 407
               
Sbjct: 137 DTTL 140

Length = 489

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 41.1 bits (96), Expect = 3e-05
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           L++Y   N DEL  K G+ I +    +E E  WW   LN K G  P N +
Sbjct: 6   LFEYVPQNEDELELKVGDIIDIN---EEVEEGWWSGTLNGKSGLFPSNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 12/54 (22%)

Query: 433 FLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 486
            LY V+            A +DY A +TDEL+F+ G+ I+V+   D  E++  W
Sbjct: 1   VLYKVR------------ATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGW 42

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 41.2 bits (96), Expect = 4e-05
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A ++++  N DELSF  G+ I V R  +     WW    N + G+ P N
Sbjct: 2   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 49

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY ++    ++L  + G+ I +L   +E+   WW  K+ ++ G+ P N
Sbjct: 4   ALYKFKPQENEDLEMRPGDKITLLDDSNED---WWKGKIEDRVGFFPAN 49

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRN 499
            V ALYDY A   DELSF     I  + K D     WW      K + + P N
Sbjct: 1   TVKALYDYRAQRPDELSFCKHAIITNVEKEDGG---WWRGDYGGKKQKWFPAN 50

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A +D+E    DELSF  G+ I +     E   EW   +LN K G  P N
Sbjct: 4   ARFDFEGEQEDELSFSEGDVITLKEYVGE---EWAKGELNGKIGIFPLN 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK---EGYVPRN 499
           V ALYD++     +L  + GE  +VL   D++   WW  +  +K   EGY+P N
Sbjct: 2   VVALYDFQPIEPGDLPLEKGEEYVVL---DDSNEHWW--RARDKNGNEGYIPSN 50

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW------SKLNNKEGYVPRN 499
           V ALYD+   + ++LSFK G+ I VL K        WW      S    K G+ P N
Sbjct: 2   VVALYDFTPKSKNQLSFKAGDIIYVLNKDPSG----WWDGVIISSSGKVKRGWFPSN 54

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.7 bits (96), Expect = 5e-05
 Identities = 16/53 (30%), Positives = 28/53 (52%)

Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLV 366
              L  A++ G LELV        D +  +++G TALH A   G+ ++++ L+
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           A +DY   +  ELSFK G+ + + R+  +   +WW  +LN ++G VP
Sbjct: 4   AQFDYTGRSERELSFKKGDSLTLYRQVSD---DWWRGQLNGQDGLVP 47

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAAND----EGITALHNAICAGHFDIVRFLVQFGCDV 372
           L DA  EG+   V     L+     A+D    +G+T LH A      DI++ L+  G D 
Sbjct: 72  LHDAVEEGD---VKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP 128

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +  ++D + PLH A    ++  +  L++H AC+
Sbjct: 129 DIPNTDKFSPLHLAVMMGDIKGIELLIDHKACL 161

Length = 413

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNA 374
           +G T LH A   G+ ++V+ L+  G D+NA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|212699 cd11765, SH3_Nck_1, First Src Homology 3 domain of Nck adaptor proteins

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW-WSKLNNKEGYVPRN 499
           V A YDY A    ELS K  E + +L    ++ + WW     +N+ GYVP N
Sbjct: 2   VVAKYDYTAQGDQELSIKKNEKLTLL----DDSKHWWKVQNSSNQTGYVPSN 49

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The first SH3 domain of Nck proteins preferentially binds the PxxDY sequence, which is present in the CD3e cytoplasmic tail. This binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 40.6 bits (95), Expect = 6e-05
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYDY+A   +ELSF   + II +   D++   WW  + +   G  P N
Sbjct: 2   AKALYDYDAAEDNELSFFENDKIINIEFVDDD---WWLGECHGSRGLFPSN 49

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 40.4 bits (94), Expect = 6e-05
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A+YDY  +  DELSF  G  I V++K D+    W+    N   G  P N
Sbjct: 2   VVAIYDYSKDKDDELSFMEGAIIYVIKKNDDG---WYEGVCNGVTGLFPGN 49

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           ALYDY+A +  E+SF  G+ I  + + DE    WW        G  P    GL+P
Sbjct: 4   ALYDYQAADDTEISFDPGDIITDIEQIDEG---WW-------RGTGPDGTYGLFP 48

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 40.3 bits (94), Expect = 7e-05
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKEGYVP 497
           V ALY+  A+N DEL+F  GE IIV     E ++EWW   ++    + G  P
Sbjct: 2   VKALYNCVADNPDELTFSEGEIIIV---DGEEDKEWWIGHIDGEPTRRGAFP 50

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 40.1 bits (94), Expect = 7e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRN 499
             ALYDY+    +ELSF  G+ + V    D+++ +W     N  + G+VP N
Sbjct: 2   AKALYDYDKQTEEELSFNEGDTLDVY---DDSDSDWILVGFNGTQFGFVPAN 50

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 39.7 bits (93), Expect = 9e-05
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY YE+N   +L+F  G+ I+V +K    + EWW   + ++ G  P N
Sbjct: 4   ALYPYESNEPGDLTFNAGDVILVTKK----DGEWWTGTIGDRTGIFPSN 48

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.2 bits (104), Expect = 1e-04
 Identities = 27/83 (32%), Positives = 45/83 (54%)

Query: 323 EGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMP 382
           +G+LE +        D +  +D G   +H AI    FDI++ L++ G   N +D++G  P
Sbjct: 134 KGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESP 193

Query: 383 LHCAASCNNLAMVRFLVEHGACI 405
           LH AA   + A ++ L++HG  I
Sbjct: 194 LHNAAEYGDYACIKLLIDHGNHI 216

Length = 434

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS-CNNLAMVRFLVEHGACIFA 407
           LH+A+   +  IV  L++ G   +A+D  G  PLH +   C +  +++ L+EHG  + A
Sbjct: 205 LHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNA 263

Length = 477

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
              ALYDYE+    +LSFK GE + ++   +  E +WW   S    + GY+P N
Sbjct: 1   TFVALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGQTGYIPSN 51

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           A+YD++A  + ELSFK G+ + +LRK D+N   W+  + + + G  P
Sbjct: 5   AVYDFKAQTSKELSFKKGDTVYILRKIDQN---WYEGEHHGRVGIFP 48

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 40.0 bits (93), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A ++++  N DELS   G+ I V R  +     WW   LN K G+ P N
Sbjct: 4   VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGKTGWFPSN 51

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 449 VYALYDYEANNTD--ELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRNLLGL 503
             ALY Y+A+  D  ELSF+ GE   +L   D + + WW ++ +N E G  P N L L
Sbjct: 2   ARALYPYDASPDDPNELSFEKGE---ILEVSDTSGK-WWQARKSNGETGICPSNYLQL 55

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 498
           L+D   +  DELSFK G+ I +L K + N   WW  ++    G VP+
Sbjct: 5   LWDCTGDQPDELSFKRGDTIYILSK-EYNRFGWWVGEMKGTIGLVPK 50

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 8/56 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-----NNKEGYVPRN 499
           V ALY YE+++ D+L+F  G+ I V  + D    +W++ +      N KEG  P+N
Sbjct: 4   VKALYPYESDHEDDLNFDVGQLITVTEEEDA---DWYFGEYVDSNGNTKEGIFPKN 56

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY ++A +  ELS K G+ I + R+ D+N   W+  + N + G  P +
Sbjct: 4   ALYPFKAQSAKELSLKKGDIIYIRRQIDKN---WYEGEHNGRVGIFPAS 49

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           YDY+A + DEL+ + GE I  ++K +E    W   +LN + G  P N +
Sbjct: 6   YDYDAVHEDELTIRVGEIIRNVKKLEEE--GWLEGELNGRRGMFPDNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212874 cd11941, SH3_ARHGEF37_C2, Second C-terminal Src homology 3 domain of Rho guanine nucleotide exchange factor 37

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDEN-EREWWWSKLNNKEGYVPRNLL 501
           V A Y + A +  E+S + G+ + VL   D+    EW   ++N + GYVP + L
Sbjct: 2   VVAAYPFTARSKHEVSLQAGQPVTVLEPHDKKGSPEWSLVEVNGQRGYVPSSYL 55

ARHGEF37 contains a RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. Its specific function is unknown. Its domain architecture is similar to the C-terminal half of DNMBP or Tuba, a cdc42-specific GEF that provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics, and plays an important role in regulating cell junction configuration. GEFs activate small GTPases by exchanging bound GDP for free GTP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212949 cd12016, SH3_Tks_2, Second Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
             Y+A N DE+ F+TG  + V++K   N   WW  +   KEG+ P   L
Sbjct: 7   QAYKAENEDEIGFETGVVVEVIQK---NLDGWWKIRYQGKEGWAPATYL 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the second SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGA 403
           DG  PLH AA   NL +V+ L++ GA
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGA 26

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|212845 cd11912, SH3_Bzz1_1, First Src Homology 3 domain of Bzz1 and similar domains

 Score = 38.7 bits (91), Expect = 3e-04
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVP 497
            LYDY A+  DE+S   GE + VL   D +     W+K+ N   +EG VP
Sbjct: 4   VLYDYTASGDDEVSISEGEEVTVLEPDDGSG----WTKVRNGSGEEGLVP 49

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the first C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 38.7 bits (90), Expect = 3e-04
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDEN---EREWWWSKLNNKEGYVPRN 499
           ALY +EA N DE+SF  G+ I V    DE    E  W +       G+ P N
Sbjct: 6   ALYPFEARNHDEMSFNAGDIIQV----DEKTVGEPGWLYGSFQGNFGWFPCN 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
             + Y   N DEL  K G+ I V+    E E  WW   LN K G  P N +
Sbjct: 4   VAFSYLPQNEDELELKVGDIIEVV---GEVEEGWWEGVLNGKTGMFPSNFI 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212844 cd11911, SH3_CIP4-like, Src Homology 3 domain of Cdc42-Interacting Protein 4

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 11/52 (21%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRK--GDENEREWWWSKL---NNKEGYVP 497
           ALYD++  +   LS + GE ++VL +  GD       W+++   N  EGYVP
Sbjct: 4   ALYDFDGTSEGTLSMEEGEILLVLEEDGGDG------WTRVRKNNGDEGYVP 49

This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. It functions downstream of Cdc42 in PDGF-dependent actin reorganization and cell migration, and also regulates the activity of PDGFRbeta. It uses Src as a substrate in regulating the invasiveness of breast tumor cells. CIP4 may also play a role in the pathogenesis of Huntington's disease. Members of this subfamily typically contain an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of CIP4 associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 38.4 bits (89), Expect = 3e-04
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLL 501
           A+YDY A + DE+SFK G+ I+ ++  DE    W +  +    K G +P N +
Sbjct: 6   AMYDYRAADDDEVSFKDGDTIVNVQTIDEG---WMYGTVQRTGKTGMLPANYV 55

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 502
           + + +++A   D +SF+ G+ + V+   D+N   WW+ K++ KEG+ P + + 
Sbjct: 3   FTIGEFQATIQDGISFQKGQKVEVI---DKNPSGWWYVKIDGKEGWAPSSYIE 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 38.0 bits (89), Expect = 4e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY  +A +  ELSF+ G+ I  ++  D  E  W    LN + G +P N
Sbjct: 2   ARALYACKAEDESELSFEPGQIITNVQPSD--EPGWLEGTLNGRTGLIPEN 50

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212722 cd11788, SH3_RasGAP, Src Homology 3 domain of Ras GTPase-Activating Protein 1

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 460 TDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
           TDELSF+ G+  +V    +E E  W W  S    + G V R+L+
Sbjct: 16  TDELSFQKGDIFVVH---NELEDGWLWVTSLRTGESGLVFRDLV 56

RasGAP, also called Ras p21 protein activator, RASA1, or p120RasGAP, is part of the GAP1 family of GTPase-activating proteins. It is a 120kD cytosolic protein containing an SH3 domain flanked by two SH2 domains at the N-terminal end, a pleckstrin homology (PH) domain, a calcium dependent phospholipid binding domain (CaLB/C2), and a C-terminal catalytic GAP domain. It stimulates the GTPase activity of normal RAS p21. It acts as a positive effector of Ras in tumor cells. It also functions as a regulator downstream of tyrosine receptors such as those of PDGF, EGF, ephrin, and insulin, among others. The SH3 domain of RasGAP is unable to bind proline-rich sequences but have been shown to interact with protein partners such as the G3BP protein, Aurora kinases, and the Calpain small subunit 1. The RasGAP SH3 domain is necessary for the downstream signaling of Ras and it also influences Rho-mediated cytoskeletal reorganization. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212821 cd11888, SH3_ARHGAP9_like, Src Homology 3 domain of Rho GTPase-activating protein 9 and similar proteins

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 449 VYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V  LY +E    +  ++S K GE  ++L+K ++   +WW  +   ++K  YVP  
Sbjct: 2   VVVLYPFEYTGKDGRKVSIKEGERFLLLKKSND---DWWQVRRPGDSKPFYVPAQ 53

This subfamily is composed of Rho GTPase-activating proteins including mammalian ARHGAP9, and vertebrate ARHGAPs 12 and 27. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP9 functions as a GAP for Rac and Cdc42, but not for RhoA. It negatively regulates cell migration and adhesion. It also acts as a docking protein for the MAP kinases Erk2 and p38alpha, and may facilitate cross-talk between the Rho GTPase and MAPK pathways to control actin remodeling. ARHGAP27, also called CAMGAP1, shows GAP activity towards Rac1 and Cdc42. It binds the adaptor protein CIN85 and may play a role in clathrin-mediated endocytosis. ARHGAP12 has been shown to display GAP activity towards Rac1. It plays a role in regulating HFG-driven cell growth and invasiveness. ARHGAPs in this subfamily contain SH3, WW, Pleckstin homology (PH), and RhoGAP domains. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 37.9 bits (88), Expect = 5e-04
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 486
            V ALYDY A  +DELSF  G  I  + K    E   WW
Sbjct: 1   TVKALYDYRAKRSDELSFCKGALIHNVSK----ETGGWW 35

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V A+  Y   +   LSF  G+ I +L K    +  W +  L+ + G  P+        VQ
Sbjct: 2   VVAVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEY------VQ 55

Query: 509 P 509
           P
Sbjct: 56  P 56

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           A +DY   +  ELSFK G  +++  +  +   +WW  + N  +G VP
Sbjct: 4   AKFDYVGRSARELSFKKGASLLLYHRASD---DWWEGRHNGIDGLVP 47

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 13/55 (23%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDE------NEREWWWSKLNNKEGYVPRN 499
           A+YDY A + DE+SF+ G+ II +   D+       +R         + G +P N
Sbjct: 4   AMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQR-------TGQSGMLPAN 51

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212736 cd11802, SH3_Endophilin_B, Src homology 3 domain of Endophilin-B

 Score = 37.7 bits (88), Expect = 6e-04
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 498
            LYDY+A ++ ELS    E I V      +E ++   +  ++ G VP 
Sbjct: 4   VLYDYDAEDSTELSLLADEVITVYELPGMDE-DYMMGERGSQRGKVPV 50

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           A +DY      ELSFK G+ +++  K      +WW  + N   G +P
Sbjct: 6   ACFDYTGRTAQELSFKRGDVLLLHSKASS---DWWRGEHNGMRGLIP 49

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 37.2 bits (86), Expect = 7e-04
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           AL +Y  +N  +L F  G+ I++ R+ DEN   W+  ++N   G  P +
Sbjct: 5   ALCNYRGHNPGDLKFNKGDVILLRRQLDEN---WYLGEINGVSGIFPAS 50

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 18/88 (20%)

Query: 337 KDPSAANDEGITALHNAICAGHF--------DIVRFLVQFGCDVNAQDSDGWMPLHCAA- 387
            D  A +D   + LH      H          IVR L++ GCD  A D  G  PLH  A 
Sbjct: 178 ADVYAVDDRFRSLLH------HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMAT 231

Query: 388 --SCNNLAMVRFLVEHGACIFATTHSDH 413
             SC    +V  L+  G  I A      
Sbjct: 232 GSSCKRS-LVLPLLIAGISINARNRYGQ 258

Length = 471

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 37.2 bits (86), Expect = 8e-04
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 451 ALYDYEANNTDELSFKTGECI-IVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A YD+ A +  ELS K G+ + I  +KG +    WW  ++N + G+ P  
Sbjct: 4   ARYDFCARDMRELSLKEGDVVKIYNKKGQQG---WWRGEINGRIGWFPST 50

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 36.9 bits (85), Expect = 9e-04
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY Y ++   +L+F  GE I+V +K    + EWW   + ++ G  P N
Sbjct: 4   ALYPYSSSEPGDLTFNEGEEILVTQK----DGEWWTGSIEDRTGIFPSN 48

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A YD+ A +  ELS K G+ I +L K  +    WW  ++  + G+ P N
Sbjct: 4   ARYDFCARDRSELSLKEGDIIKILNKKGQQ--GWWRGEIYGRVGWFPAN 50

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
            +Y Y A + DE++ + G  + V++K   N   WW  +   KEG+ P + L
Sbjct: 5   VIYPYTARDQDEINLEKGAVVEVIQK---NLEGWWKIRYQGKEGWAPASYL 52

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212691 cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3 domain-binding protein 4

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           V A+ DY   N   L F  G+ + VL   D +  EWW++    + GY+P
Sbjct: 2   VVAIKDYCPTNFTTLKFSKGDHLYVL---DTSGGEWWYAHNTTEMGYIP 47

SH3 domain-binding protein 4 (SH3BP4) is also called transferrin receptor trafficking protein (TTP). SH3BP4 is an endocytic accessory protein that interacts with endocytic proteins including clathrin and dynamin, and regulates the internalization of the transferrin receptor (TfR). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|213010 cd12077, SH3_Tks5_2, Second Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 36.9 bits (85), Expect = 0.001
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 455 YEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           Y +   DE+ F+ G  + V++K   N   WW+ +   KEG+ P + L
Sbjct: 9   YTSQGKDEIGFEKGVTVEVIQK---NLEGWWYIRYLGKEGWAPASYL 52

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the second SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212822 cd11889, SH3_Cyk3p-like, Src Homology 3 domain of Cytokinesis protein 3 and similar proteins

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
           V A+Y +      +L F  G+ I VL  GD +   WW  KL  N  EG  P N
Sbjct: 2   VKAVYSWAGETEGDLGFLEGDLIEVLSIGDGS---WWSGKLRRNGAEGIFPSN 51

Cytokinesis protein 3 (Cyk3 or Cyk3p) is a component of the actomyosin ring independent cytokinesis pathway in yeast. It interacts with Inn1 and facilitates its recruitment to the bud neck, thereby promoting cytokinesis. Cyk3p contains an N-terminal SH3 domain and a C-terminal transglutaminase-like domain. The Cyk3p SH3 domain binds to the C-terminal proline-rich region of Inn1. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 53

>gnl|CDD|213007 cd12074, SH3_Tks5_1, First Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 454 DYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           +YE     E+S + GE + V+ K   NE  WW+     ++G+VP   L
Sbjct: 7   NYEKQENSEISLQAGEVVDVIEK---NESGWWFVSTAEEQGWVPATYL 51

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the first SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212828 cd11895, SH3_FCHSD1_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 1

 Score = 36.5 bits (84), Expect = 0.002
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVL-RKGDENEREWWWSKLNNKEGYVP 497
             ALY Y   + +ELSF  G  I +L R  D  +  +W  +   + G  P
Sbjct: 2   ARALYSYTGQSPEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFP 51

FCHSD1 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 36.4 bits (84), Expect = 0.002
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           L+D+ A ++D+LS  +GE + +L K D    EW+  K  N  G  P N
Sbjct: 5   LHDFPAEHSDDLSLNSGEIVYLLEKIDT---EWYRGKCKNTTGIFPAN 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.6 bits (95), Expect = 0.002
 Identities = 27/125 (21%), Positives = 49/125 (39%), Gaps = 31/125 (24%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL  +  G   L+ +  +   DP   + +G T LH A   G+ D V  L++  C+V+ +D
Sbjct: 529 LLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD 588

Query: 377 SDG----------------WMPLHC---------------AASCNNLAMVRFLVEHGACI 405
           ++G                 +  H                AA  N+L  ++ L++ G  +
Sbjct: 589 ANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNV 648

Query: 406 FATTH 410
            +  H
Sbjct: 649 DSEDH 653

Length = 823

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 36.2 bits (83), Expect = 0.002
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           N   Y  ++Y A   DELS   G  +IV+ K  +    WW    N + G+ P N
Sbjct: 1   NLPAYVKFNYTAEREDELSLVKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSN 51

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212948 cd12015, SH3_Tks_1, First Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 35.9 bits (83), Expect = 0.002
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 454 DYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 502
           DY+    +E+S + G+ + V+ K   NE  WW+  L +++G+VP   L 
Sbjct: 7   DYKKQQPNEISLRAGDVVDVIEK---NENGWWFVSLEDEQGWVPATYLE 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the first SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212791 cd11857, SH3_DBS, Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLL 501
            + DYE    D+L+ K+G+ + ++ +GD  E +W    L+  KEG+VP   L
Sbjct: 4   VVADYEKGGPDDLTVKSGDLVQLIHEGD--EGQWLVKNLSTRKEGWVPAANL 53

DBS, also called MCF2L (MCF2-transforming sequence-like protein) or OST, is a Rho GTPase guanine nucleotide exchange factor (RhoGEF), facilitating the exchange of GDP and GTP. It was originally isolated from a cDNA screen for sequences that cause malignant growth. It plays roles in regulating clathrin-mediated endocytosis and cell migration through its activation of Rac1 and Cdc42. Depending on cell type, DBS can also activate RhoA and RhoG. DBS contains a Sec14-like domain, spectrin-like repeats, a RhoGEF [or Dbl homology (DH)] domain, a Pleckstrin homology (PH) domain, and an SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)

Query: 338 DPSAANDEGITALHNAICAGHF-DIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
           D +AA+   IT LH A       DIV  L++ G +VNA+D     P+H AA  NN+ ++ 
Sbjct: 333 DVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIIN 392

Query: 397 FLVEHGACIFATTH 410
            L+++GA I A + 
Sbjct: 393 TLLDYGADIEALSQ 406

Length = 682

>gnl|CDD|213011 cd12078, SH3_Tks4_3, Third Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 35.8 bits (82), Expect = 0.002
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           Y + D++    D +SF+ G  + V+ K   N   WW+ ++ +KEG+ P   +
Sbjct: 3   YTIADFQTTIPDGISFQAGLKVEVIEK---NLSGWWYIQIEDKEGWAPATFI 51

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the third SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 18/66 (27%), Positives = 33/66 (50%)

Query: 316 LLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
           LL  A+   +L  + +  +   +  + + +G TAL  A+   H D+VR L+  G DV+  
Sbjct: 625 LLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA 684

Query: 376 DSDGWM 381
           ++D   
Sbjct: 685 NTDDDF 690

Length = 823

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 32/100 (32%)

Query: 345 EGITALHNAICAGHFDIVRFLVQF-------------------------------GCDVN 373
            G TAL NAI A H  I R L  F                               G +V+
Sbjct: 590 NGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD 649

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA-CIFATTHSD 412
           ++D  G   L  A + +++ MVR L+ +GA    A T  D
Sbjct: 650 SEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDD 689

Length = 823

>gnl|CDD|212769 cd11835, SH3_ARHGAP32_33, Src homology 3 domain of Rho GTPase-activating proteins 32 and 33, and similar proteins

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 498
           A + +  Y A   DELS + G+ + V+      E  WW  K   + G+ P 
Sbjct: 1   AAHVIKRYTAQAPDELSLEVGDIVSVIDMPPPEESTWWRGKKGFQVGFFPS 51

Members of this family contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP32 is also called RICS, PX-RICS, p250GAP, or p200RhoGAP. It is a Rho GTPase-activating protein for Cdc42 and Rac1, and is implicated in the regulation of postsynaptic signaling and neurite outgrowth. PX-RICS, a variant of RICS that contain PX and SH3 domains, is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. ARHGAP33, also called sorting nexin 26 or TCGAP (Tc10/CDC42 GTPase-activating protein), is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212818 cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains

 Score = 35.8 bits (83), Expect = 0.003
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRNL 500
           A  D+E     ELSF+ G+ I ++  GD      W+   SK + + G+VP N 
Sbjct: 4   AKMDFEGVEPGELSFRQGDSIEII--GDLIPGLQWFVGRSKSSGRVGFVPTNH 54

This subfamily is composed of vertebrate SH3TC proteins and hypothetical fungal proteins containing BAR and SH3 domains. Mammals contain two SH3TC proteins, SH3TC1 and SH3TC2. The function of SH3TC1 is unknown. SH3TC2 is localized in Schwann cells in the peripheral nervous system, where it interacts with Rab11 and plays a role in peripheral nerve myelination. Mutations in SH3TC2 are associated with Charcot-Marie-Tooth disease type 4C, a severe hereditary peripheral neuropathy with symptoms that include progressive scoliosis, delayed age of walking, muscular atrophy, distal weakness, and reduced nerve conduction velocity. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212911 cd11978, SH3_VAV3_2, C-terminal (or second) Src homology 3 domain of VAV3 protein

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           G   A YD+ A +  ELS   G+ + +  K   N   WW  ++N + G+ P
Sbjct: 1   GIAIARYDFCARDMRELSLLKGDVVKIYTKMSTN--GWWRGEVNGRVGWFP 49

VAV3 is ubiquitously expressed and functions as a phosphorylation-dependent guanine nucleotide exchange factor (GEF) for RhoA, RhoG, and Rac1. It has been implicated to function in the hematopoietic, bone, cerebellar, and cardiovascular systems. VAV3 is essential in axon guidance in neurons that control blood pressure and respiration. It is overexpressed in prostate cancer cells and it plays a role in regulating androgen receptor transcriptional activity. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212819 cd11886, SH3_BOI, Src Homology 3 domain of fungal BOI-like proteins

 Score = 35.4 bits (82), Expect = 0.003
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 14/61 (22%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL----GLYPR 506
            ++D+ A + DEL+ K G+ I ++   +E    W          Y+ RNL     GL+P 
Sbjct: 4   VIHDFNARSEDELTLKPGDKIELIEDDEEFGDGW----------YLGRNLRTGETGLFPV 53

Query: 507 V 507
           V
Sbjct: 54  V 54

This subfamily includes the Saccharomyces cerevisiae proteins BOI1 and BOI2, and similar proteins. They contain an N-terminal SH3 domain, a Sterile alpha motif (SAM), and a Pleckstrin homology (PH) domain at the C-terminus. BOI1 and BOI2 interact with the SH3 domain of Bem1p, a protein involved in bud formation. They promote polarized cell growth and participates in the NoCut signaling pathway, which is involved in the control of cytokinesis. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212744 cd11810, SH3_RUSC1_like, Src homology 3 domain of RUN and SH3 domain-containing proteins 1 and 2

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
            V AL  + A ++ +LSF+ G+ + V+ + D+   +W      + +G VP
Sbjct: 1   VVRALCHHVATDSGQLSFRKGDILRVIARVDD---DWLLCTRGSTKGLVP 47

RUSC1 and RUSC2, that were originally characterized in silico. They are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC2, also called Iporin, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 35.3 bits (82), Expect = 0.004
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKE-GYVPRN 499
           A YD+ A + DELSF+ G+ + +  K  +   R W  + ++ ++ G VP N
Sbjct: 4   AEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPAN 54

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 497
           G   A Y++ A+   ELS + G+ +++L++ D+N   W+  K+   N++G  P
Sbjct: 1   GEAVAKYNFNADTNVELSLRKGDRVVLLKQVDQN---WYEGKIPGTNRQGIFP 50

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213012 cd12079, SH3_Tks5_3, Third Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 35.4 bits (81), Expect = 0.004
 Identities = 13/48 (27%), Positives = 29/48 (60%), Gaps = 3/48 (6%)

Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           Y + ++++  +D +SF+ G+   V+   ++N   WW+ ++  KEG+ P
Sbjct: 4   YTIAEFQSCISDGISFRGGQKAEVI---EKNSGGWWYVQIGEKEGWAP 48

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the third SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	514
KOG0515|consensus	752		100.0
KOG4412|consensus	226		99.94
KOG4412|consensus	226		99.94
KOG0509|consensus	600		99.93
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.89
PHA02791	284	ankyrin-like protein; Provisional	99.89
PHA02878	477	ankyrin repeat protein; Provisional	99.89
KOG0509|consensus	600		99.89
PHA02946	446	ankyin-like protein; Provisional	99.88
PHA02791	284	ankyrin-like protein; Provisional	99.88
PHA02874	434	ankyrin repeat protein; Provisional	99.88
PHA02875	413	ankyrin repeat protein; Provisional	99.88
PHA03095	471	ankyrin-like protein; Provisional	99.88
PHA03100	480	ankyrin repeat protein; Provisional	99.88
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.88
PHA02875	413	ankyrin repeat protein; Provisional	99.87
PHA02878	477	ankyrin repeat protein; Provisional	99.87
PHA03100	480	ankyrin repeat protein; Provisional	99.86
KOG0508|consensus	615		99.86
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.86
PHA02859	209	ankyrin repeat protein; Provisional	99.85
PHA03095	471	ankyrin-like protein; Provisional	99.85
PHA02946	446	ankyin-like protein; Provisional	99.84
PHA02798	489	ankyrin-like protein; Provisional	99.84
KOG0508|consensus	615		99.83
PHA02743	166	Viral ankyrin protein; Provisional	99.83
PHA02989	494	ankyrin repeat protein; Provisional	99.83
PHA02917	661	ankyrin-like protein; Provisional	99.83
KOG0510|consensus	929		99.82
PHA02989	494	ankyrin repeat protein; Provisional	99.82
PHA02798	489	ankyrin-like protein; Provisional	99.82
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.82
PHA02741	169	hypothetical protein; Provisional	99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.82
PHA02876	682	ankyrin repeat protein; Provisional	99.81
KOG0512|consensus	228		99.79
KOG0502|consensus	296		99.79
PHA02795	437	ankyrin-like protein; Provisional	99.79
KOG0502|consensus	296		99.79
PHA02795	437	ankyrin-like protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.79
KOG0195|consensus	448		99.77
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.76
PHA02917	661	ankyrin-like protein; Provisional	99.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
KOG0514|consensus	452		99.76
KOG0505|consensus	527		99.76
KOG0514|consensus	452		99.75
PHA02743	166	Viral ankyrin protein; Provisional	99.75
PHA02884	300	ankyrin repeat protein; Provisional	99.74
KOG4177|consensus	1143		99.74
KOG0512|consensus	228		99.74
PHA02730	672	ankyrin-like protein; Provisional	99.73
PHA02730	672	ankyrin-like protein; Provisional	99.73
KOG0510|consensus	929		99.72
KOG4177|consensus	1143		99.71
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.69
PHA02884	300	ankyrin repeat protein; Provisional	99.67
PHA02792	631	ankyrin-like protein; Provisional	99.66
PHA02792	631	ankyrin-like protein; Provisional	99.65
PHA02736	154	Viral ankyrin protein; Provisional	99.65
PHA02741	169	hypothetical protein; Provisional	99.65
KOG0195|consensus	448		99.64
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.63
KOG0507|consensus	854		99.63
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.62
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.61
KOG0505|consensus	527		99.61
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.59
KOG3676|consensus	782		99.56
KOG4214|consensus	117		99.56
KOG0507|consensus	854		99.52
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
KOG3676|consensus	782		99.46
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.43
KOG4214|consensus	117		99.4
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.4
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.39
KOG1710|consensus	396		99.38
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.33
KOG1710|consensus	396		99.33
KOG4369|consensus	2131		99.3
KOG0515|consensus	752		99.3
KOG4369|consensus	2131		99.27
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.27
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.27
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.17
KOG0506|consensus	622		98.84
KOG0783|consensus	1267		98.8
KOG0783|consensus	1267		98.78
KOG0818|consensus	669		98.76
KOG0705|consensus	749		98.65
KOG0818|consensus	669		98.64
KOG0782|consensus	1004		98.58
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	98.57
KOG0506|consensus	622		98.56
PF13606	30	Ank_3: Ankyrin repeat	98.56
PF13606	30	Ank_3: Ankyrin repeat	98.54
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.53
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.48
KOG0522|consensus	560		98.48
KOG0705|consensus	749		98.39
KOG0782|consensus	1004		98.36
KOG0520|consensus	975		98.34
KOG2384|consensus	223		98.29
KOG0511|consensus	516		98.23
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	98.21
KOG3609|consensus	822		98.12
KOG0511|consensus	516		98.1
KOG0521|consensus	785		98.06
KOG0521|consensus	785		98.04
KOG2199|consensus	462		98.02
KOG0522|consensus	560		98.01
KOG3609|consensus	822		98.0
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	97.98
KOG2070|consensus	661		97.92
KOG1029|consensus	1118		97.89
KOG4348|consensus	627		97.75
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	97.71
KOG4225|consensus	489		97.65
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	97.65
KOG2856|consensus	472		97.58
KOG0162|consensus	1106		97.54
KOG2384|consensus	223		97.41
KOG1118|consensus	366		97.41
KOG2996|consensus	865		97.38
KOG0520|consensus	975		97.34
KOG4226|consensus	379		97.18
KOG4792|consensus	293		97.15
KOG3875|consensus	362		97.13
KOG1029|consensus	1118		97.12
KOG4226|consensus	379		96.88
KOG4348|consensus	627		96.8
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.61
KOG2505|consensus	591		96.58
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.47
KOG1264|consensus	1267		95.89
KOG1843|consensus	473		95.77
KOG2546|consensus	483		95.64
KOG2505|consensus	591		95.55
KOG4225|consensus	489		95.53
KOG3601|consensus	222		95.22
KOG1702|consensus	264		94.6
KOG2222|consensus	848		94.5
KOG3557|consensus	721		94.41
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.3
KOG3655|consensus	484		93.73
KOG3523|consensus	695		93.27
KOG3632|consensus	1335		92.75
KOG4773|consensus	386		92.73
KOG4575|consensus	874		92.43
KOG3771|consensus	460		91.83
KOG4278|consensus	1157		91.81
KOG4429|consensus	421		90.67
KOG0197|consensus	468		88.27
KOG3725|consensus	375		85.62
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	84.35
KOG4792|consensus	293		82.23
KOG2528|consensus	490		82.09
KOG1451|consensus	812		81.86
KOG3601|consensus	222		81.54
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	80.3

>KOG0515|consensus

Probab=100.00  E-value=7.1e-35  Score=300.62  Aligned_cols=205  Identities=64%  Similarity=1.145  Sum_probs=197.4

Q ss_pred             cCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHh
Q psy7683         308 CVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA  387 (514)
Q Consensus       308 ~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa  387 (514)
                      ...++++.+|..|+..|.+++|+.++..--|+..-+..|.|+||-|++.||++||+|||++|++||..|.+||||||+|+
T Consensus       545 RvrfnPLaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  545 RVRFNPLALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAA  624 (752)
T ss_pred             ceecchHHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhh
Confidence            45578999999999999999999999998899999999999999999999999999999999999999999999999999


Q ss_pred             hcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhccccccccccc
Q psy7683         388 SCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKT  467 (514)
Q Consensus       388 ~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~eL~~k~  467 (514)
                      .++++.+++.|++.||.|.+....+..++..-|+..+.|+.+|..||.......++.|.+.+||||||.+...+||.|+.
T Consensus       625 SCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqesmG~mN~G~vYAlwdYeaqf~DELsf~e  704 (752)
T KOG0515|consen  625 SCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQESMGSMNKGVVYALWDYEAQFEDELSFDE  704 (752)
T ss_pred             hcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHHHhhcccccceeEEeecccccccccccccC
Confidence            99999999999999999999999999999999988899999999999999999999999999999999999999999999


Q ss_pred             CceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCCCC
Q psy7683         468 GECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSAT  512 (514)
Q Consensus       468 g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~~~  512 (514)
                      |+.+.|+++.|+.|.+|||+|++|++||+|++|+++|+|+.|+.+
T Consensus       705 Gd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPriKprqr  749 (752)
T KOG0515|consen  705 GDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRIKPRQR  749 (752)
T ss_pred             CceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccccchhh
Confidence            999999999999999999999999999999999999999998753

>KOG4412|consensus

Probab=99.94  E-value=5.4e-27  Score=215.19  Aligned_cols=160  Identities=19%  Similarity=0.225  Sum_probs=89.1

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      ++.-|..+.+..++.+-++... ..|..||+|||.||..|+.++|+.|+.+ |+|+|..+..|+|+||||+..|+.++++
T Consensus        45 a~S~g~~eiv~fLlsq~nv~~d-dkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaq  123 (226)
T KOG4412|consen   45 ACSFGHVEIVYFLLSQPNVKPD-DKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQ  123 (226)
T ss_pred             eeecCchhHHHHHHhcCCCCCC-CccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHH
Confidence            4444555555555543322222 2244555555555555555555555555 5555555555555555555555555555


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|+.++.+|..|.||||.|+..|.+++++||+..|+.+|..|..|+||++++.   ..|+.++..+|+++||++++
T Consensus       124 lLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al---~e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  124 LLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHAL---AEGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             HHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHH---hccCchHHHHHHHhccceee
Confidence            555555555555555555555555555555555555555555555555555555552   23455555555555555555


Q ss_pred             ccccc
Q psy7683         444 LNNGA  448 (514)
Q Consensus       444 ~d~~g  448 (514)
                      .|+.|
T Consensus       201 edke~  205 (226)
T KOG4412|consen  201 EDKEG  205 (226)
T ss_pred             ccccC
Confidence            55555

>KOG4412|consensus

Probab=99.94  E-value=2.6e-26  Score=210.70  Aligned_cols=182  Identities=24%  Similarity=0.203  Sum_probs=154.4

Q ss_pred             cHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhh
Q psy7683         290 EIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTA-RLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF  368 (514)
Q Consensus       290 ~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL-~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~  368 (514)
                      ....+.++++..........+.+|+++|||||..|+.++|.||+ +.+..+|.+|..||||||+||..|+.++|+.|+.+
T Consensus        15 ~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r   94 (226)
T KOG4412|consen   15 EEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNR   94 (226)
T ss_pred             hHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcC
Confidence            34455566665532333344458999999999999999999999 45788999999999999999999999999999988


Q ss_pred             -CCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccccccc
Q psy7683         369 -GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNG  447 (514)
Q Consensus       369 -Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~  447 (514)
                       |+|+|..+..|.|+||||+..|+++|+.+||++|+.++.+|..|.||+|.++   ..|..++++||+..|+.++..|..
T Consensus        95 ~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAA---avGklkvie~Li~~~a~~n~qDk~  171 (226)
T KOG4412|consen   95 SGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAA---AVGKLKVIEYLISQGAPLNTQDKY  171 (226)
T ss_pred             CCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHH---hccchhhHHHHHhcCCCCCccccc
Confidence             9999999999999999999999999999999999999999999999999887   789999999999999999999999


Q ss_pred             chhhhhhhhccccc---ccccccCceEEEe
Q psy7683         448 AVYALYDYEANNTD---ELSFKTGECIIVL  474 (514)
Q Consensus       448 g~taL~d~~~~~~~---eL~~k~g~~i~vl  474 (514)
                      |+|+|+.+-.....   .+.++.|..+.+.
T Consensus       172 G~TpL~~al~e~~~d~a~lLV~~gAd~~~e  201 (226)
T KOG4412|consen  172 GFTPLHHALAEGHPDVAVLLVRAGADTDRE  201 (226)
T ss_pred             CccHHHHHHhccCchHHHHHHHhccceeec
Confidence            99999877433322   2344555444443

>KOG0509|consensus

Probab=99.93  E-value=9.2e-26  Score=240.02  Aligned_cols=214  Identities=22%  Similarity=0.237  Sum_probs=182.7

Q ss_pred             chhhhhhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHH
Q psy7683         274 QTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAN-DEGITALHN  352 (514)
Q Consensus       274 ~~~~il~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d-~~G~TpLh~  352 (514)
                      +.+..+.....+..+|+++.++.+++.. ....+..|.+|.++|||||.+++++++++|+++|+++|..+ .-+.|||||
T Consensus        40 e~d~~~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHW  118 (600)
T KOG0509|consen   40 EEDSSLDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHW  118 (600)
T ss_pred             ccchhhhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchH
Confidence            4455667778899999999999999983 23344455699999999999999999999999999999998 568999999


Q ss_pred             HHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHH
Q psy7683         353 AICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSE  432 (514)
Q Consensus       353 Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~  432 (514)
                      ||++|++.+|++|+++|||++.+|.+|.++||+|++.|+.-+|-|||.+|+|++.+|++|+|++++++   .+|+...++
T Consensus       119 Aar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAa---ykg~~~~v~  195 (600)
T KOG0509|consen  119 AARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAA---YKGFALFVR  195 (600)
T ss_pred             HHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHH---HhcccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999988   778877799


Q ss_pred             HHHhhhhhccccc-ccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         433 FLYSVQEKLGILN-NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       433 lLl~~GAd~~i~d-~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      +|++.|+.+...| ..|.|||+.+......+       .+.++.++...      ....+..|-.|.++++++
T Consensus       196 ~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~-------~v~Ll~~g~~~------~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  196 RLLKFGASLLLTDDNHGNTPLHWAVVGGNLT-------AVKLLLEGGAD------LDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             HHHHhcccccccccccCCchHHHHHhcCCcc-------eEehhhhcCCc------ccccccCCCCHHHHHHHh
Confidence            9999999999988 89999998777555444       33444443221      134456688999888665

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=201.70  Aligned_cols=169  Identities=14%  Similarity=0.117  Sum_probs=148.2

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcC--CHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHc--
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEG--ELELVMKTARLVKDPSAAN-DEGITALHNAICA--  356 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g--~~~~V~~LL~~gad~n~~d-~~G~TpLh~Aa~~--  356 (514)
                      +..++..++++.++.+++.+     +..+..|.||||+|+..+  +.+++++|+++|++++.++ ..|+||||+|+..  
T Consensus        25 L~~A~~~~~~~~vk~Li~~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~   99 (209)
T PHA02859         25 LFYYVEKDDIEGVKKWIKFV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNK   99 (209)
T ss_pred             HHHHHHhCcHHHHHHHHHhh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCc
Confidence            44567789999999999753     234567999999999854  8999999999999999997 4899999998864  


Q ss_pred             -CChhHHHHHHhhCCCCcccCCCCCchhhhHhh--cCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHH
Q psy7683         357 -GHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS--CNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEF  433 (514)
Q Consensus       357 -g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~--~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~l  433 (514)
                       ++.+++++|+++|+++|.+|..|.||||+|+.  .++.+++++|+++|++++.+|..|.|+++.++  ...++.+++++
T Consensus       100 ~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a--~~~~~~~iv~~  177 (209)
T PHA02859        100 NVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYI--LFHSDKKIFDF  177 (209)
T ss_pred             cccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHH--HhcCCHHHHHH
Confidence             47899999999999999999999999999886  46899999999999999999999999998655  25789999999


Q ss_pred             HHhhhhhcccccccchhhhhhhhc
Q psy7683         434 LYSVQEKLGILNNGAVYALYDYEA  457 (514)
Q Consensus       434 Ll~~GAd~~i~d~~g~taL~d~~~  457 (514)
                      |+++|++++.+|..|.+++..+..
T Consensus       178 Ll~~Gadi~~~d~~g~tpl~la~~  201 (209)
T PHA02859        178 LTSLGIDINETNKSGYNCYDLIKF  201 (209)
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHhh
Confidence            999999999999999999876544

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.89  E-value=8.8e-23  Score=218.13  Aligned_cols=171  Identities=20%  Similarity=0.228  Sum_probs=150.5

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCC-----------------------C
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVK-----------------------D  338 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~ga-----------------------d  338 (514)
                      +..+...|+.+.++.+++.|...  +..+..|.++||.|+..|+.+++++|+++|+                       +
T Consensus        39 L~~A~~~g~~~iv~~Ll~~Ga~~--n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d  116 (434)
T PHA02874         39 LIDAIRSGDAKIVELFIKHGADI--NHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGID  116 (434)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCC
Confidence            33477889999999999988432  3345678899999999999999999887764                       4


Q ss_pred             CCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhh
Q psy7683         339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAV  418 (514)
Q Consensus       339 ~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~  418 (514)
                      ++.++..|.||||+||..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.|+++.
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~  196 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHN  196 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            56778889999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhc
Q psy7683         419 KCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEA  457 (514)
Q Consensus       419 aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~  457 (514)
                      ++   ..|+.+++++|++.|++++..+..|.++|+.+..
T Consensus       197 A~---~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~  232 (434)
T PHA02874        197 AA---EYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAII  232 (434)
T ss_pred             HH---HcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHH
Confidence            87   7899999999999999999999999999886654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.2e-22  Score=205.57  Aligned_cols=159  Identities=16%  Similarity=0.175  Sum_probs=82.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..++.+.++.+++.|.....    .++.||||+|+..|+.++|++|++.|++++.+|..|+||||+||..|+.+++++
T Consensus        37 Aa~~g~~eiv~~Ll~~ga~~n~----~d~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~  112 (284)
T PHA02791         37 AIADNNVRLVCTLLNAGALKNL----LENEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKL  112 (284)
T ss_pred             HHHcCCHHHHHHHHHCcCCCcC----CCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            3344555555555555532111    123455555555555555555555555555555555555555555555555555


Q ss_pred             HHhhCCCCcccCCCCC-chhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         365 LVQFGCDVNAQDSDGW-MPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~-TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      |+++|++++.++..|+ ||||+|+..|+.++|++|+++|++.... ..|.||++.|+   ..|+.+++++|+++|++++.
T Consensus       113 Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~-~~g~TpLh~Aa---~~g~~eiv~lLL~~gAd~n~  188 (284)
T PHA02791        113 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI---KNGHVDMMILLLDYMTSTNT  188 (284)
T ss_pred             HHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccccc-ccCccHHHHHH---HcCCHHHHHHHHHCCCCCCc
Confidence            5555555555555553 5555555555555555555554332100 12445554444   45555555555555555555


Q ss_pred             ccccchhh
Q psy7683         444 LNNGAVYA  451 (514)
Q Consensus       444 ~d~~g~ta  451 (514)
                      .+..|.++
T Consensus       189 ~d~~g~t~  196 (284)
T PHA02791        189 NNSLLFIP  196 (284)
T ss_pred             ccCCCCCh
Confidence            55444443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.89  E-value=9.8e-23  Score=220.42  Aligned_cols=203  Identities=18%  Similarity=0.120  Sum_probs=162.9

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCH-----------------------------------
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGEL-----------------------------------  326 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~-----------------------------------  326 (514)
                      +..++..|+.+.++.|++.|..  .+..+..|.||||+||..|+.                                   
T Consensus        41 Lh~A~~~g~~e~vk~Ll~~gad--vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei~~  118 (477)
T PHA02878         41 LHQAVEARNLDVVKSLLTRGHN--VNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEIFK  118 (477)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHHHH
Confidence            3447788999999999998832  334567899999999876543                                   


Q ss_pred             -----------------------------HHHHHHHHcCCCCCCCCCC-CCcHHHHHHHcCChhHHHHHHhhCCCCcccC
Q psy7683         327 -----------------------------ELVMKTARLVKDPSAANDE-GITALHNAICAGHFDIVRFLVQFGCDVNAQD  376 (514)
Q Consensus       327 -----------------------------~~V~~LL~~gad~n~~d~~-G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D  376 (514)
                                                   +++++|+++|++++.++.. |+||||+||..|+.+++++|+++|++++..|
T Consensus       119 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d  198 (477)
T PHA02878        119 IILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPD  198 (477)
T ss_pred             HHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcC
Confidence                                         2677788889999999988 9999999999999999999999999999999


Q ss_pred             CCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccc-cchhhhhhh
Q psy7683         377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNN-GAVYALYDY  455 (514)
Q Consensus       377 ~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~-~g~taL~d~  455 (514)
                      ..|+||||+|+..|+.+++++|+++|++++.+|..|.|+++.++  ...++.+++++|+++|++++..+. .|.++|+.+
T Consensus       199 ~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~--~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A  276 (477)
T PHA02878        199 KTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV--GYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS  276 (477)
T ss_pred             CCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH--HhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999887  234689999999999999999876 789999877


Q ss_pred             hcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         456 EANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       456 ~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      .. ..        +++.+|.+.+..      -...+..|.+|.+++..
T Consensus       277 ~~-~~--------~~v~~Ll~~gad------in~~d~~g~TpL~~A~~  309 (477)
T PHA02878        277 IK-SE--------RKLKLLLEYGAD------INSLNSYKLTPLSSAVK  309 (477)
T ss_pred             cc-CH--------HHHHHHHHCCCC------CCCcCCCCCCHHHHHHH
Confidence            32 22        122333221110      12345678888877653

>KOG0509|consensus

Probab=99.89  E-value=5.7e-23  Score=218.82  Aligned_cols=202  Identities=21%  Similarity=0.205  Sum_probs=174.3

Q ss_pred             hhhhhHHHhhhcCCC-CCCCCCCcchhhhhhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHH
Q psy7683         251 NINNNIEDIKEDKTS-DFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELV  329 (514)
Q Consensus       251 ~~~~~i~~~~~~~~~-~~~~~~~d~~~~il~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V  329 (514)
                      ...|.+++.+++.+. ......+|+  .-...+.-++.+++++.++.+++.|...... .+.-+.|||||||++|++.+|
T Consensus        52 ~q~G~l~~v~~lve~~g~~v~~~D~--~g~tlLHWAAiNNrl~v~r~li~~gadvn~~-gG~l~stPLHWAar~G~~~vv  128 (600)
T KOG0509|consen   52 TQYGELETVKELVESEGESVNNPDR--EGVTLLHWAAINNRLDVARYLISHGADVNAI-GGVLGSTPLHWAARNGHISVV  128 (600)
T ss_pred             hhcchHHHHHHHHhhcCcCCCCCCc--CCccceeHHHHcCcHHHHHHHHHcCCCcccc-CCCCCCCcchHHHHcCcHHHH
Confidence            345677777777777 333344443  3344566688899999999999998543332 236789999999999999999


Q ss_pred             HHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCccccccc
Q psy7683         330 MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT  409 (514)
Q Consensus       330 ~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d  409 (514)
                      .+|+++|||++.+|..|.++||.||..|+.-+|-|||.+|+|+|.+|.+|+||||||+..|+...++.||+.|+.+...|
T Consensus       129 ~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  129 DLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             HHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999888999999999999999


Q ss_pred             -CCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcc
Q psy7683         410 -HSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       410 -~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~  458 (514)
                       +.|.||+|+++   ..|+..++.+|++.|++.+..|.+|.+++.-++.+
T Consensus       209 ~~~g~TpLHwa~---~~gN~~~v~Ll~~g~~~~d~~~~~g~tp~~LA~~~  255 (600)
T KOG0509|consen  209 DNHGNTPLHWAV---VGGNLTAVKLLLEGGADLDKTNTNGKTPFDLAQER  255 (600)
T ss_pred             cccCCchHHHHH---hcCCcceEehhhhcCCcccccccCCCCHHHHHHHh
Confidence             88899999887   78999999988899999999999999998776654

>PHA02946 ankyin-like protein; Provisional

Probab=99.88  E-value=1.8e-22  Score=216.76  Aligned_cols=203  Identities=16%  Similarity=0.098  Sum_probs=164.2

Q ss_pred             CcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC--hhHHHH
Q psy7683         287 NNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGH--FDIVRF  364 (514)
Q Consensus       287 ~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~--~eiVkl  364 (514)
                      ...+.+.++.+++.|..  .+..+..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..++  .+++++
T Consensus        48 ~~~~~~iv~~Ll~~Gad--vn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~l  125 (446)
T PHA02946         48 KGLDERFVEELLHRGYS--PNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINL  125 (446)
T ss_pred             cCCCHHHHHHHHHCcCC--CCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHH
Confidence            34567788999998843  34556789999999999999999999999999999999999999999998764  789999


Q ss_pred             HHhhCCCCcc-cCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         365 LVQFGCDVNA-QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       365 LL~~Gadvn~-~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      |+++|++++. .|..|.|||| ||..|+.+++++|+++|++++..|..|.++++.++. ...+..+++++|+++|++++.
T Consensus       126 Ll~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~-~~~~~~~~v~~Ll~~Gadin~  203 (446)
T PHA02946        126 LVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLM-SDNPKASTISWMMKLGISPSK  203 (446)
T ss_pred             HHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHH-hcCCCHHHHHHHHHcCCCCcc
Confidence            9999999995 6899999998 666799999999999999999999999999987763 345667899999999999999


Q ss_pred             ccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .|..|.|+|+.+........     +++.++..+-+       ....+..|.+|++++....
T Consensus       204 ~d~~G~TpLH~Aa~~~~~~~-----~iv~lLl~gad-------in~~d~~G~TpLh~A~~~~  253 (446)
T PHA02946        204 PDHDGNTPLHIVCSKTVKNV-----DIINLLLPSTD-------VNKQNKFGDSPLTLLIKTL  253 (446)
T ss_pred             cCCCCCCHHHHHHHcCCCcH-----HHHHHHHcCCC-------CCCCCCCCCCHHHHHHHhC
Confidence            99999999987764421111     12222222111       1335678899998876653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.88  E-value=2.3e-22  Score=203.50  Aligned_cols=158  Identities=12%  Similarity=0.007  Sum_probs=140.0

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCChhHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGI-TALHNAICAGHFDIV  362 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~-TpLh~Aa~~g~~eiV  362 (514)
                      .++..++.+.++.++..|..  .+..+..|.|+||+||..|+.+++++|+++|++++.++..|+ ||||+|+..|+.++|
T Consensus        67 ~Aa~~g~~eiV~lLL~~Gad--vn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eiv  144 (284)
T PHA02791         67 QAATLEDTKIVKILLFSGMD--DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV  144 (284)
T ss_pred             HHHHCCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHH
Confidence            36678899999999998843  234567899999999999999999999999999999998885 899999999999999


Q ss_pred             HHHHhhCCCCcccC-CCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCch-hhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         363 RFLVQFGCDVNAQD-SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHET-AAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       363 klLL~~Gadvn~~D-~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~-l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      ++|+++|.+.  .| ..|.||||+|+..|+.+++++||++||+++..+..|.+| ++.++   ..|+.+++++|+++|++
T Consensus       145 k~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa---~~~~~e~v~lLl~~Ga~  219 (284)
T PHA02791        145 SYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAI---DNKDLEMLQALFKYDIN  219 (284)
T ss_pred             HHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHH---HcCCHHHHHHHHHCCCC
Confidence            9999987654  23 358999999999999999999999999999999999988 55554   89999999999999999


Q ss_pred             cccccccc
Q psy7683         441 LGILNNGA  448 (514)
Q Consensus       441 ~~i~d~~g  448 (514)
                      ++..|.++
T Consensus       220 in~~~~~~  227 (284)
T PHA02791        220 IYSVNLEN  227 (284)
T ss_pred             CccCcccC
Confidence            99998865

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.88  E-value=2.3e-22  Score=214.88  Aligned_cols=171  Identities=20%  Similarity=0.185  Sum_probs=153.5

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .+...|+++.++.+++.+... .+..+..+.|+||.|+..|+.++|++|++.|++++..+..|.||||+|+..|+.++++
T Consensus         7 ~ai~~gd~~~v~~ll~~~~~~-~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~   85 (434)
T PHA02874          7 MCIYSGDIEAIEKIIKNKGNC-INISVDETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIK   85 (434)
T ss_pred             HHHhcCCHHHHHHHHHcCCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            467789999999999876432 2334567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCC-----------------------CCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhh
Q psy7683         364 FLVQFGC-----------------------DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       364 lLL~~Ga-----------------------dvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      +|+++|+                       +++.+|..|.||||+|+..|+.++|++|+++|++++..+..|.|+++.++
T Consensus        86 ~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~  165 (434)
T PHA02874         86 LLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAI  165 (434)
T ss_pred             HHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            9987664                       56778899999999999999999999999999999999999999999887


Q ss_pred             hhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcc
Q psy7683         421 EEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       421 ~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~  458 (514)
                         ..|+.+++++|+++|++++..+..|.++|+.+...
T Consensus       166 ---~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~  200 (434)
T PHA02874        166 ---KHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEY  200 (434)
T ss_pred             ---HCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc
Confidence               78999999999999999999999999999866643

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.88  E-value=3.6e-22  Score=211.63  Aligned_cols=169  Identities=17%  Similarity=0.213  Sum_probs=147.8

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..+...|+++.++.+++.|.... ...+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.++
T Consensus        72 L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~  150 (413)
T PHA02875         72 LHDAVEEGDVKAVEELLDLGKFAD-DVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKG  150 (413)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCccc-ccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHH
Confidence            344677889999999999884332 2234568999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       362 VklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|++++++.+  ...|+.+++++|+++|+++
T Consensus       151 v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A--~~~~~~~iv~~Ll~~gad~  228 (413)
T PHA02875        151 IELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYA--IENNKIDIVRLFIKRGADC  228 (413)
T ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHH--HHcCCHHHHHHHHHCCcCc
Confidence            99999999999999999999999999999999999999999999999999887766533  3789999999999999999


Q ss_pred             ccc---cccchhhhh
Q psy7683         442 GIL---NNGAVYALY  453 (514)
Q Consensus       442 ~i~---d~~g~taL~  453 (514)
                      ++.   ++.+.+++.
T Consensus       229 n~~~~~~~~~~t~l~  243 (413)
T PHA02875        229 NIMFMIEGEECTILD  243 (413)
T ss_pred             chHhhcCCCchHHHH
Confidence            875   455556654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.88  E-value=3.5e-22  Score=214.68  Aligned_cols=171  Identities=20%  Similarity=0.164  Sum_probs=147.9

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-C
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAG-H  358 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g-~  358 (514)
                      ..+...++++.++.+++.|..  .+..+..|.|+||+|+..+   +.+++++|++.|+++|.++..|+||||+|+..| +
T Consensus        19 ~~~~~~~~~~~v~~Ll~~ga~--vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~   96 (471)
T PHA03095         19 LLNASNVTVEEVRRLLAAGAD--VNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATT   96 (471)
T ss_pred             HHcCCCCCHHHHHHHHHcCCC--cccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCc
Confidence            456778899999999998843  3344567899999999988   899999999999999999999999999999999 5


Q ss_pred             hhHHHHHHhhCCCCcccCCCCCchhhhHh--hcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         359 FDIVRFLVQFGCDVNAQDSDGWMPLHCAA--SCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       359 ~eiVklLL~~Gadvn~~D~~G~TPLh~Aa--~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      .+++++|+++|++++.+|..|+||||+|+  ..++.+++++|+++|++++..+..|.|+++.++.. ..+..+++++|++
T Consensus        97 ~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~-~~~~~~iv~~Ll~  175 (471)
T PHA03095         97 LDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKS-RNANVELLRLLID  175 (471)
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCCCHHHHHHHHH
Confidence            99999999999999999999999999999  56688999999999999999999999999877632 2456789999999


Q ss_pred             hhhhcccccccchhhhhhhh
Q psy7683         437 VQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       437 ~GAd~~i~d~~g~taL~d~~  456 (514)
                      +|++++..+..|.++++.+.
T Consensus       176 ~g~~~~~~d~~g~t~Lh~~~  195 (471)
T PHA03095        176 AGADVYAVDDRFRSLLHHHL  195 (471)
T ss_pred             cCCCCcccCCCCCCHHHHHH
Confidence            99999888888888886544

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.88  E-value=3e-22  Score=215.92  Aligned_cols=203  Identities=21%  Similarity=0.198  Sum_probs=154.7

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHH--HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--Chh
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDAS--LEGELELVMKTARLVKDPSAANDEGITALHNAICAG--HFD  360 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa--~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g--~~e  360 (514)
                      +...++.+.++.+++.|...  +..+..|.||||+|+  ..|+.+++++|+++|++++..+..|.||||+|+..|  +.+
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i--~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~  157 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANV--NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK  157 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCC--CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH
Confidence            55677888888888887433  445667888888888  888888888888888888888888889999988888  888


Q ss_pred             HHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCC------CchhhhhhhhhhcCc--hhhHH
Q psy7683         361 IVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD------HETAAVKCEEDEEGF--EGCSE  432 (514)
Q Consensus       361 iVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g------~t~l~~aa~a~~~g~--~~~v~  432 (514)
                      ++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..+      .++++.++   ..|+  .++++
T Consensus       158 iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~---~~~~~~~~iv~  234 (480)
T PHA03100        158 ILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAA---CYNEITLEVVN  234 (480)
T ss_pred             HHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHH---HhCcCcHHHHH
Confidence            8888888888888888888899999888888888898888888888888777      66666665   6677  88889


Q ss_pred             HHHhhhhhcccccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         433 FLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       433 lLl~~GAd~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      +|+++|++++..|..|.++|+.+......+       ++..+.+.+.      -....+..|.+|.+++...+
T Consensus       235 ~Ll~~g~din~~d~~g~TpL~~A~~~~~~~-------iv~~Ll~~ga------d~n~~d~~g~tpl~~A~~~~  294 (480)
T PHA03100        235 YLLSYGVPINIKDVYGFTPLHYAVYNNNPE-------FVKYLLDLGA------NPNLVNKYGDTPLHIAILNN  294 (480)
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCHH-------HHHHHHHcCC------CCCccCCCCCcHHHHHHHhC
Confidence            999988888888888888887666544333       2222222110      01234567788887765433

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.88  E-value=3.6e-22  Score=223.39  Aligned_cols=165  Identities=15%  Similarity=0.084  Sum_probs=140.8

Q ss_pred             CcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCC--HHHHHHHHHcCCCCCCCCCCCCcHHHHH-----------
Q psy7683         287 NNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGE--LELVMKTARLVKDPSAANDEGITALHNA-----------  353 (514)
Q Consensus       287 ~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~--~~~V~~LL~~gad~n~~d~~G~TpLh~A-----------  353 (514)
                      ..++.+.++.|++.|..  .+..+..|.||||+|+..|+  .++|++|+++|+++|.+|..|+||||+|           
T Consensus       188 ~~~~~eIVklLLe~GAD--VN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EI  265 (764)
T PHA02716        188 MYVDIDILEWLCNNGVN--VNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEI  265 (764)
T ss_pred             ccCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHH
Confidence            34577888889988832  33455689999999999985  4899999999999999999999999975           


Q ss_pred             --------------------------HHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhh--cCchHHHHHHHhcCccc
Q psy7683         354 --------------------------ICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS--CNNLAMVRFLVEHGACI  405 (514)
Q Consensus       354 --------------------------a~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~--~g~~eivklLL~~GAdi  405 (514)
                                                +..|+.++|++|+++|++++.+|..|+||||+|+.  .++.+++++|+++|+++
T Consensus       266 vkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADI  345 (764)
T PHA02716        266 TNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDL  345 (764)
T ss_pred             HHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCC
Confidence                                      34577889999999999999999999999999764  46789999999999999


Q ss_pred             ccccCCCCchhhhhhhh-----------hhcCchhhHHHHHhhhhhcccccccchhhhh
Q psy7683         406 FATTHSDHETAAVKCEE-----------DEEGFEGCSEFLYSVQEKLGILNNGAVYALY  453 (514)
Q Consensus       406 n~~d~~g~t~l~~aa~a-----------~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~  453 (514)
                      +.+|..|.||++.++..           ...++.+++++|+++|++++..|..|.++|+
T Consensus       346 N~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        346 NEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             ccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            99999999999876521           1246889999999999999999999999997

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.87  E-value=7.1e-22  Score=209.42  Aligned_cols=194  Identities=19%  Similarity=0.223  Sum_probs=152.8

Q ss_pred             hhhHHHhhhcCCCCCCCCCCcchhhhhhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHH
Q psy7683         253 NNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKT  332 (514)
Q Consensus       253 ~~~i~~~~~~~~~~~~~~~~d~~~~il~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~L  332 (514)
                      .+..+.++.+....+.....+.  .-...+..++..++.+.++.+++.|.....  .+..+.++||.|+..|+.++|++|
T Consensus        12 ~g~~~iv~~Ll~~g~~~n~~~~--~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~~~t~L~~A~~~g~~~~v~~L   87 (413)
T PHA02875         12 FGELDIARRLLDIGINPNFEIY--DGISPIKLAMKFRDSEAIKLLMKHGAIPDV--KYPDIESELHDAVEEGDVKAVEEL   87 (413)
T ss_pred             hCCHHHHHHHHHCCCCCCccCC--CCCCHHHHHHHcCCHHHHHHHHhCCCCccc--cCCCcccHHHHHHHCCCHHHHHHH
Confidence            4455555555555443332221  111222346677888889989888854322  235678899999999999999999


Q ss_pred             HHcCCCCC-CCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCC
Q psy7683         333 ARLVKDPS-AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS  411 (514)
Q Consensus       333 L~~gad~n-~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~  411 (514)
                      ++.|++.+ ..+..|+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|+++|++++..|..
T Consensus        88 l~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~  167 (413)
T PHA02875         88 LDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCC  167 (413)
T ss_pred             HHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC
Confidence            99887654 45667999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhh
Q psy7683         412 DHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALY  453 (514)
Q Consensus       412 g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~  453 (514)
                      |.||++.|+   ..|+.+++++|+++|++++..+..|.++++
T Consensus       168 g~TpL~~A~---~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l  206 (413)
T PHA02875        168 GCTPLIIAM---AKGDIAICKMLLDSGANIDYFGKNGCVAAL  206 (413)
T ss_pred             CCCHHHHHH---HcCCHHHHHHHHhCCCCCCcCCCCCCchHH
Confidence            999999887   788999999999999999988877654433

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.2e-21  Score=212.05  Aligned_cols=161  Identities=19%  Similarity=0.149  Sum_probs=143.6

Q ss_pred             cHHHHHHHHHcCCCCCCccCCCC-chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhh
Q psy7683         290 EIAEIKSALKSGKLGKKRCVSFD-PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF  368 (514)
Q Consensus       290 ~i~~ik~lL~~g~~~~~~~~~~~-g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~  368 (514)
                      +.+.++.+++.|...  +..+.. |.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       146 ~~~iv~~Ll~~gadi--n~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~  223 (477)
T PHA02878        146 EAEITKLLLSYGADI--NMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN  223 (477)
T ss_pred             HHHHHHHHHHcCCCC--CccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            345788888887432  223344 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCchhhhHhhc-CchHHHHHHHhcCcccccccC-CCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccc
Q psy7683         369 GCDVNAQDSDGWMPLHCAASC-NNLAMVRFLVEHGACIFATTH-SDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNN  446 (514)
Q Consensus       369 Gadvn~~D~~G~TPLh~Aa~~-g~~eivklLL~~GAdin~~d~-~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~  446 (514)
                      |++++.+|..|+||||+|+.. ++.+++++|+++|++++..+. .|.||++.++     ++.+++++|+++|++++..|.
T Consensus       224 ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A~-----~~~~~v~~Ll~~gadin~~d~  298 (477)
T PHA02878        224 GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI-----KSERKLKLLLEYGADINSLNS  298 (477)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHHc-----cCHHHHHHHHHCCCCCCCcCC
Confidence            999999999999999999975 789999999999999999986 6888888774     567899999999999999999


Q ss_pred             cchhhhhhhhc
Q psy7683         447 GAVYALYDYEA  457 (514)
Q Consensus       447 ~g~taL~d~~~  457 (514)
                      .|.|+++.+..
T Consensus       299 ~g~TpL~~A~~  309 (477)
T PHA02878        299 YKLTPLSSAVK  309 (477)
T ss_pred             CCCCHHHHHHH
Confidence            99999976653

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.86  E-value=2e-21  Score=209.55  Aligned_cols=169  Identities=22%  Similarity=0.226  Sum_probs=155.8

Q ss_pred             cc--CcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChh
Q psy7683         285 DS--NNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEG--ELELVMKTARLVKDPSAANDEGITALHNAICAGHFD  360 (514)
Q Consensus       285 ~~--~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g--~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~e  360 (514)
                      ++  ..++.+.++.+++.|..  .+..+..|.++||+|+..|  +.+++++|+++|++++.+|..|.||||+|+..|+.+
T Consensus       113 A~~~~~~~~~iv~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~  190 (480)
T PHA03100        113 AISKKSNSYSIVEYLLDNGAN--VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNID  190 (480)
T ss_pred             HHhcccChHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHH
Confidence            55  78999999999998843  3345578999999999999  999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCcccCCCC------CchhhhHhhcCc--hHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHH
Q psy7683         361 IVRFLVQFGCDVNAQDSDG------WMPLHCAASCNN--LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSE  432 (514)
Q Consensus       361 iVklLL~~Gadvn~~D~~G------~TPLh~Aa~~g~--~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~  432 (514)
                      ++++|+++|++++..+..|      .||||+|+..|+  .+++++|+++|++++.+|..|.||++.|+   ..|+.++++
T Consensus       191 iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~---~~~~~~iv~  267 (480)
T PHA03100        191 VIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAV---YNNNPEFVK  267 (480)
T ss_pred             HHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcCCHHHHH
Confidence            9999999999999999999      899999999999  99999999999999999999999999887   788999999


Q ss_pred             HHHhhhhhcccccccchhhhhhhhcc
Q psy7683         433 FLYSVQEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       433 lLl~~GAd~~i~d~~g~taL~d~~~~  458 (514)
                      +|+++|++++..+..|.+++..+...
T Consensus       268 ~Ll~~gad~n~~d~~g~tpl~~A~~~  293 (480)
T PHA03100        268 YLLDLGANPNLVNKYGDTPLHIAILN  293 (480)
T ss_pred             HHHHcCCCCCccCCCCCcHHHHHHHh
Confidence            99999999999999999998766543

>KOG0508|consensus

Probab=99.86  E-value=9.7e-22  Score=202.20  Aligned_cols=171  Identities=20%  Similarity=0.221  Sum_probs=150.5

Q ss_pred             CCcccCcccHHHHHHHHHcCCC--C-----CCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKL--G-----KKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAI  354 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~--~-----~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa  354 (514)
                      +..++.+|..+.++.+++....  .     ..+.....|-++|..|+..||+++|+.|+++|+++|.......|||-.||
T Consensus        46 L~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraAC  125 (615)
T KOG0508|consen   46 LLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAAC  125 (615)
T ss_pred             eeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHH
Confidence            4456789999999999984311  1     12222356789999999999999999999999999998888889999999


Q ss_pred             HcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHH
Q psy7683         355 CAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL  434 (514)
Q Consensus       355 ~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lL  434 (514)
                      ..|++++|++|+++|+|++..|+.|.|.||+||..||.+|+++|++.|||+|.++..|.|++|.++   +.|+.+++++|
T Consensus       126 fDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~ca---EsG~vdivq~L  202 (615)
T KOG0508|consen  126 FDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCA---ESGSVDIVQLL  202 (615)
T ss_pred             hcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhh---hcccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999887   88999999999


Q ss_pred             Hhhhhhcccccccchhhhhhhh
Q psy7683         435 YSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       435 l~~GAd~~i~d~~g~taL~d~~  456 (514)
                      +++|+.+.+.. .|.++|..+.
T Consensus       203 l~~ga~i~~d~-~GmtPL~~Aa  223 (615)
T KOG0508|consen  203 LKHGAKIDVDG-HGMTPLLLAA  223 (615)
T ss_pred             HhCCceeeecC-CCCchHHHHh
Confidence            99999987544 4888887655

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.86  E-value=3.7e-21  Score=215.33  Aligned_cols=168  Identities=13%  Similarity=0.137  Sum_probs=146.7

Q ss_pred             CcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh--hHH
Q psy7683         287 NNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASL--EGELELVMKTARLVKDPSAANDEGITALHNAICAGHF--DIV  362 (514)
Q Consensus       287 ~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~--~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~--eiV  362 (514)
                      ..++++.++.|++.|..+.....+..|.|+||+|+.  .++.++|++|+++|++++.+|..|+||||+|+..|+.  ++|
T Consensus       151 ~~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIV  230 (764)
T PHA02716        151 RGIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVI  230 (764)
T ss_pred             cCCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHH
Confidence            458999999999998433332335789999999865  4678999999999999999999999999999999964  899


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhH-------------------------------------hhcCchHHHHHHHhcCccc
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCA-------------------------------------ASCNNLAMVRFLVEHGACI  405 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~A-------------------------------------a~~g~~eivklLL~~GAdi  405 (514)
                      ++|+++||++|.+|..|+||||+|                                     +..|+.+++++|+++|+++
T Consensus       231 klLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI  310 (764)
T PHA02716        231 KKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL  310 (764)
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce
Confidence            999999999999999999999975                                     3457789999999999999


Q ss_pred             ccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhh
Q psy7683         406 FATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDY  455 (514)
Q Consensus       406 n~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~  455 (514)
                      +.+|..|+|+++.++.+ ..++.+++++|+++|++++..|..|.++|+.+
T Consensus       311 N~kD~~G~TPLH~Aaa~-~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A  359 (764)
T PHA02716        311 HYKDSAGRTCLHQYILR-HNISTDIIKLLHEYGNDLNEPDNIGNTVLHTY  359 (764)
T ss_pred             eccCCCCCCHHHHHHHH-hCCCchHHHHHHHcCCCCccCCCCCCCHHHHH
Confidence            99999999999987632 45688999999999999999999999999754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.85  E-value=3.8e-21  Score=186.44  Aligned_cols=177  Identities=18%  Similarity=0.170  Sum_probs=142.3

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--ChhHHHHHHhhCCCCcccC-CCCCchhhhHh
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAG--HFDIVRFLVQFGCDVNAQD-SDGWMPLHCAA  387 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g--~~eiVklLL~~Gadvn~~D-~~G~TPLh~Aa  387 (514)
                      ..+.+|||+|+..|+.++|+.|++.   ++..|..|.||||+|+..+  +.+++++|+++|++++.++ ..|+||||+|+
T Consensus        19 ~~~~~pL~~A~~~~~~~~vk~Li~~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         19 YRYCNPLFYYVEKDDIEGVKKWIKF---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             hccCcHHHHHHHhCcHHHHHHHHHh---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            3568999999999999999999985   4667889999999999854  8999999999999999997 48999999987


Q ss_pred             hc---CchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccccccc
Q psy7683         388 SC---NNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELS  464 (514)
Q Consensus       388 ~~---g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~eL~  464 (514)
                      ..   ++.+++++|+++|++++.+|..|.|+++.++. ...++.+++++|+++|++++.+|..|.++++.+......   
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~-~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~---  171 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMC-NFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSD---  171 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH-hccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCC---
Confidence            64   47999999999999999999999999997762 245789999999999999999999999999865432211   


Q ss_pred             cccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         465 FKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       465 ~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                         .+++.+|.+.+.    .  ....+..|.+|.+++..
T Consensus       172 ---~~iv~~Ll~~Ga----d--i~~~d~~g~tpl~la~~  201 (209)
T PHA02859        172 ---KKIFDFLTSLGI----D--INETNKSGYNCYDLIKF  201 (209)
T ss_pred             ---HHHHHHHHHcCC----C--CCCCCCCCCCHHHHHhh
Confidence               112233322110    1  13456789999988754

>PHA03095 ankyrin-like protein; Provisional

Probab=99.85  E-value=9.7e-21  Score=203.52  Aligned_cols=168  Identities=17%  Similarity=0.141  Sum_probs=148.2

Q ss_pred             cccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCChhHHHH
Q psy7683         288 NQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEG-ELELVMKTARLVKDPSAANDEGITALHNAI--CAGHFDIVRF  364 (514)
Q Consensus       288 ~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g-~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa--~~g~~eiVkl  364 (514)
                      .+..+.++.+++.|...  +..+..|.||||+|+..| ..+++++|+++|++++.+|..|+||||+|+  ..++.+++++
T Consensus        60 ~~~~~iv~~Ll~~Gadi--n~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~  137 (471)
T PHA03095         60 EKVKDIVRLLLEAGADV--NAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRL  137 (471)
T ss_pred             CChHHHHHHHHHCCCCC--CCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHH
Confidence            45888999999998433  334458999999999999 599999999999999999999999999999  5568899999


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcC--chHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCN--NLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g--~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      |+++|++++..|..|.||||+|+..+  +.+++++|+++|++++..+..|.++++.++. ...+..+++++|+++|++++
T Consensus       138 Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~-~~~~~~~i~~~Ll~~g~~~~  216 (471)
T PHA03095        138 LLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQ-SFKPRARIVRELIRAGCDPA  216 (471)
T ss_pred             HHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHH-HCCCcHHHHHHHHHcCCCCc
Confidence            99999999999999999999998866  5799999999999999999889999988773 24678899999999999999


Q ss_pred             cccccchhhhhhhhcc
Q psy7683         443 ILNNGAVYALYDYEAN  458 (514)
Q Consensus       443 i~d~~g~taL~d~~~~  458 (514)
                      ..|..|.++|+.+...
T Consensus       217 ~~d~~g~tpLh~Aa~~  232 (471)
T PHA03095        217 ATDMLGNTPLHSMATG  232 (471)
T ss_pred             ccCCCCCCHHHHHHhc
Confidence            9999999999866643

>PHA02946 ankyin-like protein; Provisional

Probab=99.84  E-value=1.5e-20  Score=201.86  Aligned_cols=201  Identities=16%  Similarity=0.141  Sum_probs=155.2

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChh
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASL--EGELELVMKTARLVKDPSAANDEGITALHNAICAGHFD  360 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~--~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~e  360 (514)
                      ..+...++++.++.++.....       ....++||.++.  .++.++|++|+++|+++|.+|..|+||||+||..|+.+
T Consensus        14 ~~~~~~~n~~~~~~~l~~~~~-------~g~~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~e   86 (446)
T PHA02946         14 YAKYNSKNLDVFRNMLQAIEP-------SGNYHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNR   86 (446)
T ss_pred             HHHHccCcHHHHHHHHhccCC-------CCCChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHH
Confidence            345566778888888875421       224688887764  44679999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCCcccCCCCCchhhhHhhcC--chHHHHHHHhcCccccc-ccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         361 IVRFLVQFGCDVNAQDSDGWMPLHCAASCN--NLAMVRFLVEHGACIFA-TTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       361 iVklLL~~Gadvn~~D~~G~TPLh~Aa~~g--~~eivklLL~~GAdin~-~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      +|++|+++|+++|.+|..|+||||+|+..+  ..+++++|+++|++++. .+..|.++++ +|   ..|..+++++|+++
T Consensus        87 iv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa---~~~~~~vv~~Ll~~  162 (446)
T PHA02946         87 IVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-AC---TDPSERVFKKIMSI  162 (446)
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HH---HCCChHHHHHHHhc
Confidence            999999999999999999999999998765  47999999999999996 5667777774 44   56889999999999


Q ss_pred             hhhcccccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         438 QEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       438 GAd~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      |++++..|..|.++|+.+........     +++..+.+.+.      -....+..|.+|++++...+
T Consensus       163 gad~~~~d~~G~t~Lh~A~~~~~~~~-----~~v~~Ll~~Ga------din~~d~~G~TpLH~Aa~~~  219 (446)
T PHA02946        163 GFEARIVDKFGKNHIHRHLMSDNPKA-----STISWMMKLGI------SPSKPDHDGNTPLHIVCSKT  219 (446)
T ss_pred             cccccccCCCCCCHHHHHHHhcCCCH-----HHHHHHHHcCC------CCcccCCCCCCHHHHHHHcC
Confidence            99999999999999976554322111     01112211100      01234668999999877543

>PHA02798 ankyrin-like protein; Provisional

Probab=99.84  E-value=1.1e-20  Score=205.06  Aligned_cols=166  Identities=16%  Similarity=0.165  Sum_probs=139.2

Q ss_pred             cCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC---
Q psy7683         286 SNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLE-----GELELVMKTARLVKDPSAANDEGITALHNAICAG---  357 (514)
Q Consensus       286 ~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g---  357 (514)
                      ...++.+.++.+++.|..  .+..+..|.||||.|+..     +..+++++|+++|+|+|.+|..|+||||+|+..+   
T Consensus        46 ~~~~~~~iv~~Ll~~Gad--vn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~  123 (489)
T PHA02798         46 RDSPSTDIVKLFINLGAN--VNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYIN  123 (489)
T ss_pred             CCCCCHHHHHHHHHCCCC--CCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcC
Confidence            345688999999999853  334457899999998754     6789999999999999999999999999999876   


Q ss_pred             ChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc---hHHHHHHHhcCcccccccC-CCCchhhhhhhh-hhcCchhhHH
Q psy7683         358 HFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN---LAMVRFLVEHGACIFATTH-SDHETAAVKCEE-DEEGFEGCSE  432 (514)
Q Consensus       358 ~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~---~eivklLL~~GAdin~~d~-~g~t~l~~aa~a-~~~g~~~~v~  432 (514)
                      +.+++++|+++|++++..|..|.||||+|+..++   .+++++|+++|++++..+. .|.++++.++.. ...++.++++
T Consensus       124 ~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk  203 (489)
T PHA02798        124 NLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILK  203 (489)
T ss_pred             hHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHH
Confidence            6899999999999999999999999999999988   9999999999999998865 456666655422 2456789999


Q ss_pred             HHHhhhhhcccccccchhhhh
Q psy7683         433 FLYSVQEKLGILNNGAVYALY  453 (514)
Q Consensus       433 lLl~~GAd~~i~d~~g~taL~  453 (514)
                      +|+++|++++..+..+.++++
T Consensus       204 ~Li~~Ga~i~~~~~~~~~~~~  224 (489)
T PHA02798        204 LFVDNGFIINKENKSHKKKFM  224 (489)
T ss_pred             HHHHCCCCcccCCccccchHH
Confidence            999999999887766666554

>KOG0508|consensus

Probab=99.83  E-value=3.6e-21  Score=198.07  Aligned_cols=175  Identities=21%  Similarity=0.277  Sum_probs=147.0

Q ss_pred             ccCcccHHHHHHHHHcCC---CCCCccCCCCchhHHHHHHHcCCHHHHHHHHH-cCCCCCCC--------CCCCCcHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGK---LGKKRCVSFDPLALLLDASLEGELELVMKTAR-LVKDPSAA--------NDEGITALHN  352 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~---~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~-~gad~n~~--------d~~G~TpLh~  352 (514)
                      +...|.+..++.++-...   +...-.....|.|||..||++|+.++|++|++ .++++...        ...|-+||..
T Consensus        11 aa~~g~l~~l~~ll~~~s~~ei~~l~~~~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWa   90 (615)
T KOG0508|consen   11 AARDGKLQLLAKLLINSSNEEIISLIGEVQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWA   90 (615)
T ss_pred             HhhhhhHHHHHHHHhCCchHHHHHHhccccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhH
Confidence            445566666666554421   11111112467799999999999999999999 47776543        3468899999


Q ss_pred             HHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHH
Q psy7683         353 AICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSE  432 (514)
Q Consensus       353 Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~  432 (514)
                      |+..||+++|++|+++|++||.......|||--||.-|++++|+||+++|||++..|..|+|.++.+|   .+|+.++++
T Consensus        91 AsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~---ykGh~~I~q  167 (615)
T KOG0508|consen   91 ASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIAC---YKGHVDIAQ  167 (615)
T ss_pred             HhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeee---ccCchHHHH
Confidence            99999999999999999999999888999999999999999999999999999999999999999998   899999999


Q ss_pred             HHHhhhhhcccccccchhhhhhhhcccccc
Q psy7683         433 FLYSVQEKLGILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       433 lLl~~GAd~~i~d~~g~taL~d~~~~~~~e  462 (514)
                      ||++.|||++.++..|.|||+++......+
T Consensus       168 yLle~gADvn~ks~kGNTALH~caEsG~vd  197 (615)
T KOG0508|consen  168 YLLEQGADVNAKSYKGNTALHDCAESGSVD  197 (615)
T ss_pred             HHHHhCCCcchhcccCchHHHhhhhcccHH
Confidence            999999999999999999999998544443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.83  E-value=1.9e-20  Score=175.04  Aligned_cols=137  Identities=18%  Similarity=0.138  Sum_probs=123.1

Q ss_pred             CCCchhHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH---HHHHHhhCCCCcccC-CCCCc
Q psy7683         310 SFDPLALLLDASLEGEL----ELVMKTARLVKDPSAANDEGITALHNAICAGHFDI---VRFLVQFGCDVNAQD-SDGWM  381 (514)
Q Consensus       310 ~~~g~t~Lh~Aa~~g~~----~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei---VklLL~~Gadvn~~D-~~G~T  381 (514)
                      +..+.+.||.||..|++    +++++|++.|++++.+|..|+||||+||..|+.++   +++|+++|+++|.+| ..|.|
T Consensus        17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~T   96 (166)
T PHA02743         17 DEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNT   96 (166)
T ss_pred             ccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCc
Confidence            34567889999999998    56667888899999999999999999999998654   899999999999998 58999


Q ss_pred             hhhhHhhcCchHHHHHHHh-cCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccch
Q psy7683         382 PLHCAASCNNLAMVRFLVE-HGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAV  449 (514)
Q Consensus       382 PLh~Aa~~g~~eivklLL~-~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~  449 (514)
                      |||+|+..|+.+++++|+. .|++++..+..|.|++++++   ..++.+++++|+.+|++++..+..|.
T Consensus        97 pLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~---~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743         97 LLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAY---KMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             HHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            9999999999999999995 89999999999999999887   77899999999999999988876653

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.83  E-value=2.5e-20  Score=202.67  Aligned_cols=167  Identities=16%  Similarity=0.181  Sum_probs=136.3

Q ss_pred             CcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcC------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---C
Q psy7683         287 NNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEG------ELELVMKTARLVKDPSAANDEGITALHNAICA---G  357 (514)
Q Consensus       287 ~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g------~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~---g  357 (514)
                      ..+..+.++.||+.|......  + .+.||||.|+..+      +.++|++|+++|+|+|.+|..|+||||+|+..   |
T Consensus        46 ~~~~~~iv~~Ll~~GAdvn~~--~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~  122 (494)
T PHA02989         46 KDVKIKIVKLLIDNGADVNYK--G-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNIN  122 (494)
T ss_pred             CCCChHHHHHHHHcCCCccCC--C-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccC
Confidence            345788899999998543322  2 3578999887654      46899999999999999999999999988765   6


Q ss_pred             ChhHHHHHHhhCCCC-cccCCCCCchhhhHhhc--CchHHHHHHHhcCccccc-ccCCCCchhhhhhhh-hhcCchhhHH
Q psy7683         358 HFDIVRFLVQFGCDV-NAQDSDGWMPLHCAASC--NNLAMVRFLVEHGACIFA-TTHSDHETAAVKCEE-DEEGFEGCSE  432 (514)
Q Consensus       358 ~~eiVklLL~~Gadv-n~~D~~G~TPLh~Aa~~--g~~eivklLL~~GAdin~-~d~~g~t~l~~aa~a-~~~g~~~~v~  432 (514)
                      +.++|++|+++|||+ +.+|..|+||||+|+..  ++.++|++|+++|++++. .+..|.||++.++.. ...++.++++
T Consensus       123 ~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~  202 (494)
T PHA02989        123 NCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIK  202 (494)
T ss_pred             cHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHH
Confidence            789999999999999 78999999999998754  688999999999999998 577888888876532 2356889999


Q ss_pred             HHHhhhhhcccccccchhhhhhhh
Q psy7683         433 FLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       433 lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      +|++.|++++..+.++.++++.+.
T Consensus       203 ~Ll~~Ga~vn~~~~~~~t~l~~~~  226 (494)
T PHA02989        203 YLIKKGVNIETNNNGSESVLESFL  226 (494)
T ss_pred             HHHhCCCCccccCCccccHHHHHH
Confidence            999999999998887777776543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.83  E-value=5.5e-20  Score=205.73  Aligned_cols=172  Identities=11%  Similarity=0.073  Sum_probs=119.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHH----HHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChh
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFD  360 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~----~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~e  360 (514)
                      ++..++.+.++.+|+.|...  +..+..|+||||+|+..|+.+    ++++|++.+...+..+.  .+++|+|+..|+.+
T Consensus        42 ~~~~~~~~~v~~Ll~~ga~v--~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~--~~~~~~a~~~~~~e  117 (661)
T PHA02917         42 NEHCNNVEVVKLLLDSGTNP--LHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDF--NIFSYMKSKNVDVD  117 (661)
T ss_pred             hhhcCcHHHHHHHHHCCCCc--cccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCc--chHHHHHhhcCCHH
Confidence            34445566666666655322  233455666666666665532    34455554333333221  24455566666788


Q ss_pred             HHHHHHhhCCCCcccCCCCCchhhhHh--hcCchHHHHHHHhcCcccccccCC---C-----------Cchhhhhhhh--
Q psy7683         361 IVRFLVQFGCDVNAQDSDGWMPLHCAA--SCNNLAMVRFLVEHGACIFATTHS---D-----------HETAAVKCEE--  422 (514)
Q Consensus       361 iVklLL~~Gadvn~~D~~G~TPLh~Aa--~~g~~eivklLL~~GAdin~~d~~---g-----------~t~l~~aa~a--  422 (514)
                      +|++|+++|+|+|.+|..|+||||+|+  ..|+.+++++|+++||+++..+..   |           +|+++.++..  
T Consensus       118 ~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~  197 (661)
T PHA02917        118 LIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHL  197 (661)
T ss_pred             HHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcc
Confidence            999999999999999999999999654  578999999999999999866543   2           4888877631  


Q ss_pred             ------hhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         423 ------DEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       423 ------~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                            +..++.+++++|+++|++++..|..|.++|+.+.....
T Consensus       198 ~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~  241 (661)
T PHA02917        198 YSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSH  241 (661)
T ss_pred             cccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCC
Confidence                  12468899999999999999999999999987775543

>KOG0510|consensus

Probab=99.82  E-value=3.2e-20  Score=201.37  Aligned_cols=170  Identities=22%  Similarity=0.205  Sum_probs=152.5

Q ss_pred             cCCcccCcccHHHHHHHHHcCCCCC-------------CccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Q psy7683         281 SSPSDSNNQEIAEIKSALKSGKLGK-------------KRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGI  347 (514)
Q Consensus       281 ~~~~~~~~g~i~~ik~lL~~g~~~~-------------~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~  347 (514)
                      .+..+...|+++.++.+|+.|.-..             .+..|.+|.||||+||+.|+.++|..|+..|++++.++.++.
T Consensus       228 pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~  307 (929)
T KOG0510|consen  228 PLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEE  307 (929)
T ss_pred             chhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCC
Confidence            3455788899999999998874332             233577899999999999999999999999999999999999


Q ss_pred             cHHHHHHHcCChhHHHHHHh-hC-CCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccc---cccCCCCchhhhhhhh
Q psy7683         348 TALHNAICAGHFDIVRFLVQ-FG-CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIF---ATTHSDHETAAVKCEE  422 (514)
Q Consensus       348 TpLh~Aa~~g~~eiVklLL~-~G-advn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin---~~d~~g~t~l~~aa~a  422 (514)
                      ||||+||.+|++++|+.||+ .| ...|..|..|+||||+|+..||.+++++||..||+..   ..|.+|.|++|.|+  
T Consensus       308 spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa--  385 (929)
T KOG0510|consen  308 SPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAA--  385 (929)
T ss_pred             CchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHH--
Confidence            99999999999999999998 44 4578899999999999999999999999999999988   45888999999887  


Q ss_pred             hhcCchhhHHHHHhhhhhcccccccchhhhh
Q psy7683         423 DEEGFEGCSEFLYSVQEKLGILNNGAVYALY  453 (514)
Q Consensus       423 ~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~  453 (514)
                       ..|+..+|++|+.+||+++..|..|.+|+.
T Consensus       386 -~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  386 -KYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             -HhccHHHHHHHHHcCCceeecccccccccc
Confidence             899999999999999999999999988875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.82  E-value=6.6e-20  Score=199.38  Aligned_cols=168  Identities=13%  Similarity=0.173  Sum_probs=128.7

Q ss_pred             cccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHc---CCHHHHHHHHHcCCCC-CCCCCCCCcHHHHHHHc--CChhH
Q psy7683         288 NQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLE---GELELVMKTARLVKDP-SAANDEGITALHNAICA--GHFDI  361 (514)
Q Consensus       288 ~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~---g~~~~V~~LL~~gad~-n~~d~~G~TpLh~Aa~~--g~~ei  361 (514)
                      .+..+.++.|++.|..  .+..+..|.||||.|+..   |+.++|++|+++|+|+ +.+|..|+||||+|+..  ++.++
T Consensus        85 ~~~~~iv~~Ll~~Gad--in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~i  162 (494)
T PHA02989         85 NKIKKIVKLLLKFGAD--INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDV  162 (494)
T ss_pred             hhHHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHH
Confidence            3456677778887743  233445678888877654   5688888888888888 77888888888887654  57788


Q ss_pred             HHHHHhhCCCCcc-cCCCCCchhhhHhhcC----chHHHHHHHhcCcccccc----------------------------
Q psy7683         362 VRFLVQFGCDVNA-QDSDGWMPLHCAASCN----NLAMVRFLVEHGACIFAT----------------------------  408 (514)
Q Consensus       362 VklLL~~Gadvn~-~D~~G~TPLh~Aa~~g----~~eivklLL~~GAdin~~----------------------------  408 (514)
                      |++|+++|++++. .+..|.||||+|+..+    +.+++++|+++|++++..                            
T Consensus       163 v~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~  242 (494)
T PHA02989        163 IKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNF  242 (494)
T ss_pred             HHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHH
Confidence            8888888888887 5778888888877653    778888888888776544                            


Q ss_pred             ----------cCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         409 ----------THSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       409 ----------d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                                |..|.||++.++   ..|+.+++++|+++|++++..+..|.++|+.+.....
T Consensus       243 l~~~advn~~d~~G~TpL~~Aa---~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~  301 (494)
T PHA02989        243 ILKYIKINKKDKKGFNPLLISA---KVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGN  301 (494)
T ss_pred             HHhCCCCCCCCCCCCCHHHHHH---HhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence                      445778887776   7789999999999999999999999999876654443

>PHA02798 ankyrin-like protein; Provisional

Probab=99.82  E-value=9.3e-20  Score=197.93  Aligned_cols=166  Identities=17%  Similarity=0.262  Sum_probs=142.3

Q ss_pred             ccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---hhHH
Q psy7683         289 QEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAGH---FDIV  362 (514)
Q Consensus       289 g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~---~eiV  362 (514)
                      +..+.++.+++.|..  .+..+..|.||||+|+..+   +.+++++|+++|++++.+|..|.||||+|+..|+   .+++
T Consensus        87 ~~~~iv~~Ll~~Gad--iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv  164 (489)
T PHA02798         87 HMLDIVKILIENGAD--INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEII  164 (489)
T ss_pred             hHHHHHHHHHHCCCC--CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHH
Confidence            457888999998843  3445678999999999876   7899999999999999999999999999999998   9999


Q ss_pred             HHHHhhCCCCcccC-CCCCchhhhHhhc----CchHHHHHHHhcCcccc-------------------------------
Q psy7683         363 RFLVQFGCDVNAQD-SDGWMPLHCAASC----NNLAMVRFLVEHGACIF-------------------------------  406 (514)
Q Consensus       363 klLL~~Gadvn~~D-~~G~TPLh~Aa~~----g~~eivklLL~~GAdin-------------------------------  406 (514)
                      ++|+++|++++..+ ..|.||||+++..    ++.+++++|+++|++++                               
T Consensus       165 ~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~  244 (489)
T PHA02798        165 KLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDF  244 (489)
T ss_pred             HHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHH
Confidence            99999999999885 5789999998764    47889999988887554                               


Q ss_pred             --------cccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhccc
Q psy7683         407 --------ATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANN  459 (514)
Q Consensus       407 --------~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~  459 (514)
                              .+|..|.||++.|+   ..|+.+++++|+++||+++..+..|.|+|+.+....
T Consensus       245 l~~~~dvN~~d~~G~TPL~~A~---~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~  302 (489)
T PHA02798        245 IFSYIDINQVDELGFNPLYYSV---SHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENE  302 (489)
T ss_pred             HHhcCCCCCcCcCCccHHHHHH---HcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcC
Confidence                    45667888888777   788999999999999999999999999998666443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.82  E-value=8.4e-20  Score=209.90  Aligned_cols=164  Identities=20%  Similarity=0.136  Sum_probs=147.0

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      ..++..|+.+.++.+++.|..  .+..+..|.|+||+|+..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++
T Consensus       530 ~~Aa~~g~~~~l~~Ll~~G~d--~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv  607 (823)
T PLN03192        530 LTVASTGNAALLEELLKAKLD--PDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIF  607 (823)
T ss_pred             HHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHH
Confidence            336678999999999999843  334567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      ++|++.++..+.  ..|.++||+|+..|+.+++++|+++|++++..|..|.|+++.|+   ..|+.+++++|+++|++++
T Consensus       608 ~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~---~~g~~~iv~~Ll~~GAdv~  682 (823)
T PLN03192        608 RILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAM---AEDHVDMVRLLIMNGADVD  682 (823)
T ss_pred             HHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---HCCcHHHHHHHHHcCCCCC
Confidence            999988876653  45779999999999999999999999999999999999999887   8899999999999999999


Q ss_pred             cccccc-hhhhh
Q psy7683         443 ILNNGA-VYALY  453 (514)
Q Consensus       443 i~d~~g-~taL~  453 (514)
                      ..+..+ .+++.
T Consensus       683 ~~~~~g~~t~~~  694 (823)
T PLN03192        683 KANTDDDFSPTE  694 (823)
T ss_pred             CCCCCCCCCHHH
Confidence            998776 55543

>PHA02741 hypothetical protein; Provisional

Probab=99.82  E-value=1e-19  Score=170.37  Aligned_cols=130  Identities=17%  Similarity=0.240  Sum_probs=119.0

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcHHHHHHHcCC----hhHHHHHHhhCCCCcccCC-
Q psy7683         309 VSFDPLALLLDASLEGELELVMKTAR------LVKDPSAANDEGITALHNAICAGH----FDIVRFLVQFGCDVNAQDS-  377 (514)
Q Consensus       309 ~~~~g~t~Lh~Aa~~g~~~~V~~LL~------~gad~n~~d~~G~TpLh~Aa~~g~----~eiVklLL~~Gadvn~~D~-  377 (514)
                      .+..|.++||+|+..|+.++|++|+.      .|++++.+|..|+||||+|+..|+    .+++++|+++|++++.+|. 
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~   96 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEML   96 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcC
Confidence            34679999999999999999999854      368899999999999999999999    5899999999999999985 


Q ss_pred             CCCchhhhHhhcCchHHHHHHHh-cCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         378 DGWMPLHCAASCNNLAMVRFLVE-HGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       378 ~G~TPLh~Aa~~g~~eivklLL~-~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      .|+||||+|+..++.+++++|+. .|++++..|..|.|+++.++   ..++.+++++|+++++..
T Consensus        97 ~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~---~~~~~~iv~~L~~~~~~~  158 (169)
T PHA02741         97 EGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAI---DNEDVAMMQILREIVATS  158 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHH---HCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999997 59999999999999999887   788999999999998764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.82  E-value=1.1e-19  Score=205.10  Aligned_cols=144  Identities=24%  Similarity=0.163  Sum_probs=79.4

Q ss_pred             CCchhHHHHHHHcC-CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC-ChhHHHHHHhhCCCCcccCCCCCchhhhHhh
Q psy7683         311 FDPLALLLDASLEG-ELELVMKTARLVKDPSAANDEGITALHNAICAG-HFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS  388 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g-~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g-~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~  388 (514)
                      ..|.||||+|+..| +.++++.|+..|++++..|..|+||||+|+..+ +.+++++|+++|++++.+|..|+||||+|+.
T Consensus       305 ~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~  384 (682)
T PHA02876        305 IKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAV  384 (682)
T ss_pred             CCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHH
Confidence            44555555555555 355555555555555555555555555555432 3455555555555555555555555555555


Q ss_pred             cCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         389 CNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       389 ~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      .|+.+++++|+++|++++..+..|+|++++++  ...+...++++|+++|++++..|..|.|+|+.+.
T Consensus       385 ~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~--~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa  450 (682)
T PHA02876        385 RNNVVIINTLLDYGADIEALSQKIGTALHFAL--CGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYAC  450 (682)
T ss_pred             cCCHHHHHHHHHCCCCccccCCCCCchHHHHH--HcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHH
Confidence            55555666666556555555555555555544  1233344555566666666656655666655443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.81  E-value=1.3e-19  Score=204.50  Aligned_cols=169  Identities=17%  Similarity=0.150  Sum_probs=140.6

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .+...++.+.++.+++.|..  .+..+..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+..|+.++++
T Consensus       151 ~~i~~~~~~i~k~Ll~~Gad--vn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~L~~A~~~~~~~ivk  228 (682)
T PHA02876        151 ERIQQDELLIAEMLLEGGAD--VNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIK  228 (682)
T ss_pred             HHHHCCcHHHHHHHHhCCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCHHHHHHHcCCHHHHH
Confidence            34567888889999988843  3344568999999999999999999999999999999999999999999888877665


Q ss_pred             HH-----------------------------HhhCCCCcccCCCCCchhhhHhhcCch-HHHHHHHhcCcccccccCCCC
Q psy7683         364 FL-----------------------------VQFGCDVNAQDSDGWMPLHCAASCNNL-AMVRFLVEHGACIFATTHSDH  413 (514)
Q Consensus       364 lL-----------------------------L~~Gadvn~~D~~G~TPLh~Aa~~g~~-eivklLL~~GAdin~~d~~g~  413 (514)
                      +|                             ++.|++++..|..|+||||+|+..++. +++++|+++|++++..|..|.
T Consensus       229 ~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~  308 (682)
T PHA02876        229 AIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGE  308 (682)
T ss_pred             HHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCC
Confidence            54                             445667788888899999999998886 588999999999999999999


Q ss_pred             chhhhhhhhhhcC-chhhHHHHHhhhhhcccccccchhhhhhhhc
Q psy7683         414 ETAAVKCEEDEEG-FEGCSEFLYSVQEKLGILNNGAVYALYDYEA  457 (514)
Q Consensus       414 t~l~~aa~a~~~g-~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~  457 (514)
                      |+++.++   ..| ..+++++|+..|++++..+..|.++|+.+..
T Consensus       309 TpLh~Aa---~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~  350 (682)
T PHA02876        309 TPLYLMA---KNGYDTENIRTLIMLGADVNAADRLYITPLHQAST  350 (682)
T ss_pred             CHHHHHH---HhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHH
Confidence            9988877   555 5788888999999988888888888876653

>KOG0512|consensus

Probab=99.79  E-value=1.9e-19  Score=164.55  Aligned_cols=146  Identities=27%  Similarity=0.342  Sum_probs=122.5

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhc
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVKD-PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~gad-~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~  389 (514)
                      .+....+.+|+..+.+..|+.||+..++ +|.+|.+|+||||.|+++||+++|+.|+..||+++.+...||||||-||..
T Consensus        61 ~dp~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   61 KDPIRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             cCHHHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcc
Confidence            3566778889999999999999988775 899999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHH-hhhhhcccccccchhhhhhhhcc
Q psy7683         390 NNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLY-SVQEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       390 g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl-~~GAd~~i~d~~g~taL~d~~~~  458 (514)
                      ++.+|+.+||++|||+++......||++.+|  ...+....+++|+ ..+.+....++.+.+++..+...
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa--~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT  208 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAA--GNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT  208 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhh--cccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence            9999999999999999999888888888887  3445556666665 56777887887777776554443

>KOG0502|consensus

Probab=99.79  E-value=1.9e-19  Score=170.07  Aligned_cols=141  Identities=18%  Similarity=0.183  Sum_probs=95.2

Q ss_pred             cCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHh
Q psy7683         308 CVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA  387 (514)
Q Consensus       308 ~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa  387 (514)
                      ..+..+++++.+++..-+++.+..+.+  ..+|..|..|.|||.||+.+|++++|++||+.|||++...+...++|.+|+
T Consensus       124 evs~~p~s~~slsVhql~L~~~~~~~~--n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt  201 (296)
T KOG0502|consen  124 EVSLMPWSPLSLSVHQLHLDVVDLLVN--NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLAT  201 (296)
T ss_pred             ccccccCChhhHHHHHHHHHHHHHHhh--ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHh
Confidence            344566677777766666666555544  345666777777777777777777777777777777776666667777777


Q ss_pred             hcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhh
Q psy7683         388 SCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALY  453 (514)
Q Consensus       388 ~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~  453 (514)
                      +.|..++|++||.++.|+|..|.+|+|++.+++   +.++.+|++.|+..||+++..+..|++.+.
T Consensus       202 ~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAv---rgnhvkcve~Ll~sGAd~t~e~dsGy~~md  264 (296)
T KOG0502|consen  202 RGGYTDIVELLLTREVDVNVYDWNGGTPLLYAV---RGNHVKCVESLLNSGADVTQEDDSGYWIMD  264 (296)
T ss_pred             cCChHHHHHHHHhcCCCcceeccCCCceeeeee---cCChHHHHHHHHhcCCCcccccccCCcHHH
Confidence            777777777777777777777777777776665   666777777777777777766666665543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.79  E-value=8.5e-19  Score=185.25  Aligned_cols=166  Identities=11%  Similarity=-0.005  Sum_probs=140.3

Q ss_pred             ccHHHHHHHHHcCCCCC----CccCCCCchhHHHHHHH--cCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         289 QEIAEIKSALKSGKLGK----KRCVSFDPLALLLDASL--EGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       289 g~i~~ik~lL~~g~~~~----~~~~~~~g~t~Lh~Aa~--~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      ...+.++.++..|....    .-.......|+||.++.  .|+.++|++|+++|||++..  ++.||||+|+..|+.+++
T Consensus        88 ~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIV  165 (437)
T PHA02795         88 TYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVV  165 (437)
T ss_pred             chHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHH
Confidence            34455566666664322    00244568999999999  89999999999999999884  458999999999999999


Q ss_pred             HHHHhhCCCCc-cc-----CCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         363 RFLVQFGCDVN-AQ-----DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       363 klLL~~Gadvn-~~-----D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      ++|+++|++.+ ..     +..|.|++|.|+..++.+++++|+++||+++.+|..|.|+++.++   ..|+.+++++|++
T Consensus       166 k~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa---~~g~~eiVelLL~  242 (437)
T PHA02795        166 EFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAI---YAGYIDLVSWLLE  242 (437)
T ss_pred             HHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHH---HcCCHHHHHHHHH
Confidence            99999998543 22     134789999999999999999999999999999999999999887   7899999999999


Q ss_pred             hhhhcccccccchhhhhhhhccc
Q psy7683         437 VQEKLGILNNGAVYALYDYEANN  459 (514)
Q Consensus       437 ~GAd~~i~d~~g~taL~d~~~~~  459 (514)
                      +|++++..+..|.++|+.+...+
T Consensus       243 ~GAdIN~~d~~G~TpLh~Aa~~g  265 (437)
T PHA02795        243 NGANVNAVMSNGYTCLDVAVDRG  265 (437)
T ss_pred             CCCCCCCcCCCCCCHHHHHHHcC
Confidence            99999999999999998776544

>KOG0502|consensus

Probab=99.79  E-value=2.1e-19  Score=169.70  Aligned_cols=140  Identities=22%  Similarity=0.172  Sum_probs=127.3

Q ss_pred             CCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchh
Q psy7683         304 GKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL  383 (514)
Q Consensus       304 ~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPL  383 (514)
                      +..+..++.|.|+|+||+..|++.+|++||+.|+|++...++..++|++|+..|..++|++||.++.|+|..|.+|.|||
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpL  230 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPL  230 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCcee
Confidence            34566778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccccccc
Q psy7683         384 HCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNG  447 (514)
Q Consensus       384 h~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~  447 (514)
                      -||++.||.+||+.||..||+++..+..|.+.+..+.   ..|+. +|+..++.-+.....|+.
T Consensus       231 lyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAV---alGyr-~Vqqvie~h~lkl~Q~~~  290 (296)
T KOG0502|consen  231 LYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAV---ALGYR-IVQQVIEKHALKLCQDSE  290 (296)
T ss_pred             eeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHH---HhhhH-HHHHHHHHHHHHHhhccc
Confidence            9999999999999999999999999999999998887   66766 777777776666555543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.79  E-value=7.1e-19  Score=185.85  Aligned_cols=166  Identities=16%  Similarity=0.094  Sum_probs=138.5

Q ss_pred             hhhhhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCC-CC-----CCCCCcH
Q psy7683         276 DRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPS-AA-----NDEGITA  349 (514)
Q Consensus       276 ~~il~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n-~~-----d~~G~Tp  349 (514)
                      +.++..+.... .++++.++.|++.|.....    .++.|+||.|+..|+.+++++|+.+|++.+ ..     +..|.|+
T Consensus       117 ~~~L~~~~~n~-~n~~eiV~~LI~~GADIn~----~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~  191 (437)
T PHA02795        117 QDLLLYYLSNA-YVEIDIVDFMVDHGAVIYK----IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTR  191 (437)
T ss_pred             cHHHHHHHHhc-CCCHHHHHHHHHCCCCCCC----CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccch
Confidence            33444433333 4899999999999955433    245899999999999999999999998533 22     1347899


Q ss_pred             HHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhh-----h
Q psy7683         350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEED-----E  424 (514)
Q Consensus       350 Lh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~-----~  424 (514)
                      +|.|+..++.+++++|+++||++|.+|..|.||||+|+..|+.+++++|+++||+++.++..|.|+++.|+...     .
T Consensus       192 l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~  271 (437)
T PHA02795        192 GFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARR  271 (437)
T ss_pred             hHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888321     1


Q ss_pred             cCchhhHHHHHhhhhhcccccc
Q psy7683         425 EGFEGCSEFLYSVQEKLGILNN  446 (514)
Q Consensus       425 ~g~~~~v~lLl~~GAd~~i~d~  446 (514)
                      .++.+++++|+++|++++....
T Consensus       272 ~~~~eIvelLL~~gadI~~~~~  293 (437)
T PHA02795        272 ETHLKILEILLREPLSIDCIKL  293 (437)
T ss_pred             ccHHHHHHHHHhCCCCCCchhH
Confidence            2357999999999999876553

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=2e-19  Score=165.34  Aligned_cols=130  Identities=18%  Similarity=0.182  Sum_probs=111.0

Q ss_pred             cCCCCchhHHHHHHHcCCHHHHHHHHHcCC--C-----CCCCCCCCCcHHHHHHHcCCh---hHHHHHHhhCCCCcccC-
Q psy7683         308 CVSFDPLALLLDASLEGELELVMKTARLVK--D-----PSAANDEGITALHNAICAGHF---DIVRFLVQFGCDVNAQD-  376 (514)
Q Consensus       308 ~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~ga--d-----~n~~d~~G~TpLh~Aa~~g~~---eiVklLL~~Gadvn~~D-  376 (514)
                      ..+..|.|+||+||..|+.  +.+++..+.  +     ++.+|..|+||||+||..|+.   +++++|+++|++++.+| 
T Consensus        12 ~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         12 EPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             hcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            3456899999999999984  333332222  2     234688999999999999987   46899999999999998 


Q ss_pred             CCCCchhhhHhhcCchHHHHHHHh-cCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         377 SDGWMPLHCAASCNNLAMVRFLVE-HGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       377 ~~G~TPLh~Aa~~g~~eivklLL~-~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      ..|+||||+|+..|+.+++++|+. .|++++..+..|.|+++.++   ..|+.+++++|+.+|++.+
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~---~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVAC---ERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHH---HcCCHHHHHHHHHcCCCCC
Confidence            499999999999999999999998 49999999999999999988   7889999999999998875

>KOG0195|consensus

Probab=99.77  E-value=1.1e-18  Score=170.38  Aligned_cols=197  Identities=20%  Similarity=0.179  Sum_probs=147.4

Q ss_pred             ccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhH
Q psy7683         307 RCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCA  386 (514)
Q Consensus       307 ~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~A  386 (514)
                      +..+..|..+|||||+.|+..+|+.||.+|+.+|..+....||||+|+.+||.++|+.||++.+|+|+.+..|+||||||
T Consensus        28 n~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhya  107 (448)
T KOG0195|consen   28 NVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYA  107 (448)
T ss_pred             ccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhh
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccc-----------hhhhhhh
Q psy7683         387 ASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA-----------VYALYDY  455 (514)
Q Consensus       387 a~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g-----------~taL~d~  455 (514)
                      |..|...+++-|+..||.++..+.+|.+|+..+.....   ..+.++--++|..++......           ...|-.|
T Consensus       108 cfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~---~~l~e~aek~gq~~nripfkdt~wkgtktr~rdatlsr~  184 (448)
T KOG0195|consen  108 CFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLK---NTLLEIAEKHGQSPNRIPFKDTTWKGTKTRTRDATLSRY  184 (448)
T ss_pred             hhhcHHHHHHHHHhccceeeecccCCCCchhhhchHHH---HHHHHHHHHhCCCCCcccccccccccccccccccccccc
Confidence            99999999999999999999999999999875542111   122233334565555432211           1112223


Q ss_pred             hcccccccccccCceEEEeecCCcccccceeeccCCC------------CCCchhhhhhcCCCCCCCCCC
Q psy7683         456 EANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK------------EGYVPRNLLGLYPRVQPSATP  513 (514)
Q Consensus       456 ~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~------------~G~~P~~~l~~~~~~~~~~~~  513 (514)
                      .+-+...|     +.+.-+.+  ...++.|.||-+|-            ....-++|-+++++++-|+-|
T Consensus       185 ~gid~~~l-----nl~tkl~e--~hsgelwrgrwqgndivakil~vr~~t~risrdfneefp~lrifshp  247 (448)
T KOG0195|consen  185 TGIDVSSL-----NLITKLAE--SHSGELWRGRWQGNDIVAKILNVREVTARISRDFNEEFPALRIFSHP  247 (448)
T ss_pred             cCcchhhh-----hhhhhhcc--CCCcccccccccCcchhhhhhhhhhcchhhcchhhhhCcceeeecCC
Confidence            33222222     23333333  34677999987653            223445888888888877655

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.76  E-value=3.7e-18  Score=196.33  Aligned_cols=144  Identities=20%  Similarity=0.210  Sum_probs=131.1

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcC
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN  390 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g  390 (514)
                      ....+.||.||..|+.++++.|++.|+++|..|..|+||||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..|
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAK  602 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhC
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhccc
Q psy7683         391 NLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANN  459 (514)
Q Consensus       391 ~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~  459 (514)
                      +.+++++|++.++..+.  ..++++++.++   ..|+.+++++|+++|++++..|..|.++|+.+....
T Consensus       603 ~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa---~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g  666 (823)
T PLN03192        603 HHKIFRILYHFASISDP--HAAGDLLCTAA---KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAED  666 (823)
T ss_pred             CHHHHHHHHhcCcccCc--ccCchHHHHHH---HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCC
Confidence            99999999998887654  34566666655   899999999999999999999999999998766543

>PHA02917 ankyrin-like protein; Provisional

Probab=99.76  E-value=5e-18  Score=190.04  Aligned_cols=124  Identities=15%  Similarity=0.108  Sum_probs=109.3

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH--HcCChhHHHHHHhhCCCCcccCC---CC----------
Q psy7683         315 ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAI--CAGHFDIVRFLVQFGCDVNAQDS---DG----------  379 (514)
Q Consensus       315 t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa--~~g~~eiVklLL~~Gadvn~~D~---~G----------  379 (514)
                      .++|+|+..|+.++|++|+++|+|+|.+|..|+||||+|+  ..|+.++|++|+++||++|..|.   .|          
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~  184 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRN  184 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccc
Confidence            6678899999999999999999999999999999999654  57899999999999999987654   34          


Q ss_pred             -CchhhhHhh-----------cCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCch--hhHHHHHhhhhhcc
Q psy7683         380 -WMPLHCAAS-----------CNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFE--GCSEFLYSVQEKLG  442 (514)
Q Consensus       380 -~TPLh~Aa~-----------~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~--~~v~lLl~~GAd~~  442 (514)
                       .||||+|+.           .++.++|++|+++||+++..|..|.||++.++   ..|+.  ++|++|++ |++.+
T Consensus       185 ~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~---~~g~~~~eivk~Li~-g~d~~  257 (661)
T PHA02917        185 CGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYI---KSSHIDIDIVKLLMK-GIDNT  257 (661)
T ss_pred             cccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHH---HcCCCcHHHHHHHHh-CCccc
Confidence             599999986           46899999999999999999999999999988   66764  79999975 87764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=4e-18  Score=141.88  Aligned_cols=89  Identities=38%  Similarity=0.521  Sum_probs=83.1

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHH
Q psy7683         317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR  396 (514)
Q Consensus       317 Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivk  396 (514)
                      ||+||..|+++++++|++.+.+++.    |+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~   76 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVK   76 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            7999999999999999999988876    899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCccccccc
Q psy7683         397 FLVEHGACIFATT  409 (514)
Q Consensus       397 lLL~~GAdin~~d  409 (514)
                      +|+++|++++.+|
T Consensus        77 ~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   77 LLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHTTT-TTSS-
T ss_pred             HHHHcCCCCCCcC
Confidence            9999999998765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG0514|consensus

Probab=99.76  E-value=1.7e-17  Score=166.57  Aligned_cols=154  Identities=21%  Similarity=0.184  Sum_probs=133.2

Q ss_pred             CccCCCCchhHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHc-----CChhHHHHHHhhCCCCcccC-CC
Q psy7683         306 KRCVSFDPLALLLDASLEGELELVMKTARLV-KDPSAANDEGITALHNAICA-----GHFDIVRFLVQFGCDVNAQD-SD  378 (514)
Q Consensus       306 ~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~g-ad~n~~d~~G~TpLh~Aa~~-----g~~eiVklLL~~Gadvn~~D-~~  378 (514)
                      ++..|..|.|+|||++.++++++|+.||+.| +++|..++-|+||+++|+..     .+.++|..|++.| |||++- ..
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~  339 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQH  339 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhh
Confidence            4455778999999999999999999999997 58999999999999999864     3577888888765 788764 46


Q ss_pred             CCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh-hhhcccccccchhhhhhhhc
Q psy7683         379 GWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV-QEKLGILNNGAVYALYDYEA  457 (514)
Q Consensus       379 G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~-GAd~~i~d~~g~taL~d~~~  457 (514)
                      |.|+||+|+.+|+.++|+.||..|||+|.+|.+|-|+++.+|   ++|+.+++++||.. ++|..+.|.+|.|||..+-.
T Consensus       340 gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~---EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  340 GQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAA---EHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             cchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhh---hhChHHHHHHHhccCcccceeecCCCchhhhhHHh
Confidence            999999999999999999999999999999999999998777   89999999999976 68999999999999875544


Q ss_pred             cccccc
Q psy7683         458 NNTDEL  463 (514)
Q Consensus       458 ~~~~eL  463 (514)
                      ....++
T Consensus       417 agh~eI  422 (452)
T KOG0514|consen  417 AGHREI  422 (452)
T ss_pred             cCchHH
Confidence            444443

>KOG0505|consensus

Probab=99.76  E-value=2.1e-18  Score=180.69  Aligned_cols=170  Identities=21%  Similarity=0.273  Sum_probs=150.8

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..+...++.+++..++..|...  +..+.+|+|+||.+|...+.+||++|+++|+++|..|..||||||.|+..||..+
T Consensus        44 ~l~A~~~~d~~ev~~ll~~ga~~--~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i  121 (527)
T KOG0505|consen   44 FLEACSRGDLEEVRKLLNRGASP--NLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNI  121 (527)
T ss_pred             HHhccccccHHHHHHHhccCCCc--cccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHH
Confidence            45578889999999999988333  5567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccC-----------------------------------------------------------CCCCch
Q psy7683         362 VRFLVQFGCDVNAQD-----------------------------------------------------------SDGWMP  382 (514)
Q Consensus       362 VklLL~~Gadvn~~D-----------------------------------------------------------~~G~TP  382 (514)
                      +++|+.+|+++-..+                                                           ..|.|.
T Consensus       122 ~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~  201 (527)
T KOG0505|consen  122 VEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATA  201 (527)
T ss_pred             HHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchH
Confidence            999999987533322                                                           248899


Q ss_pred             hhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         383 LHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       383 Lh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      ||.|+..|..++.++|+++|.+++.+|.+||+|+|.++   .-|..+++++|+.+|++++.....|.+++--+.
T Consensus       202 lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA---~Wg~~~~~elL~~~ga~~d~~t~~g~~p~dv~d  272 (527)
T KOG0505|consen  202 LHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA---HWGQEDACELLVEHGADMDAKTKMGETPLDVAD  272 (527)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHH---HhhhHhHHHHHHHhhcccchhhhcCCCCccchh
Confidence            99999999999999999999999999999999999887   778899999999999999998888777764433

>KOG0514|consensus

Probab=99.75  E-value=4.7e-18  Score=170.61  Aligned_cols=147  Identities=25%  Similarity=0.324  Sum_probs=127.8

Q ss_pred             cCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHc-----CCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCCh
Q psy7683         286 SNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLE-----GELELVMKTARLVKDPSAAND-EGITALHNAICAGHF  359 (514)
Q Consensus       286 ~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~-----g~~~~V~~LL~~gad~n~~d~-~G~TpLh~Aa~~g~~  359 (514)
                      ...++++.++.+|+.|-.+ ++..+..|+|++++++..     .+..+|..|...| |+|++-. .|+|+|++|+.+|+.
T Consensus       276 VSHaNF~VV~~LLDSgvC~-VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~  353 (452)
T KOG0514|consen  276 VSHANFDVVSILLDSGVCD-VDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRV  353 (452)
T ss_pred             ecccchHHHHHHhccCccc-ccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcH
Confidence            3467899999999998333 333456788888887754     4578899999886 8888754 699999999999999


Q ss_pred             hHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhc-CcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         360 DIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH-GACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       360 eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~-GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      ++|+.||.+|||||.+|.+|.|+||+||.+||.|+|++||.. ++|+...|.+|-|++..+.   ..|+.+|.-+|+.+
T Consensus       354 d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAl---eagh~eIa~mlYa~  429 (452)
T KOG0514|consen  354 DMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIAL---EAGHREIAVMLYAH  429 (452)
T ss_pred             HHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHH---hcCchHHHHHHHHH
Confidence            999999999999999999999999999999999999999977 8999999999999998887   77999999888766

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.75  E-value=6.6e-18  Score=157.90  Aligned_cols=127  Identities=15%  Similarity=0.122  Sum_probs=108.1

Q ss_pred             ccCcccHHHHHH----HHHcCCCCCCccCCCCchhHHHHHHHcCCHHH---HHHHHHcCCCCCCCC-CCCCcHHHHHHHc
Q psy7683         285 DSNNQEIAEIKS----ALKSGKLGKKRCVSFDPLALLLDASLEGELEL---VMKTARLVKDPSAAN-DEGITALHNAICA  356 (514)
Q Consensus       285 ~~~~g~i~~ik~----lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~---V~~LL~~gad~n~~d-~~G~TpLh~Aa~~  356 (514)
                      ++..++++.++.    +++.|.  .....+..|+|+||+|+..|+.+.   +++|++.|++++.+| ..|.||||+|+..
T Consensus        27 a~~~g~~~~l~~~~~~l~~~g~--~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~  104 (166)
T PHA02743         27 ICRTGNIYELMEVAPFISGDGH--LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAAST  104 (166)
T ss_pred             HHHcCCHHHHHHHHHHHhhcch--hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHh
Confidence            445677755544    334442  234456789999999999988654   899999999999998 5899999999999


Q ss_pred             CChhHHHHHHh-hCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCC
Q psy7683         357 GHFDIVRFLVQ-FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH  413 (514)
Q Consensus       357 g~~eiVklLL~-~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~  413 (514)
                      |+.+++++|+. .|++++.+|..|+||||+|+..++.+++++|+++|++++.++..|.
T Consensus       105 g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  162 (166)
T PHA02743        105 KNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGL  162 (166)
T ss_pred             CCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCc
Confidence            99999999995 8999999999999999999999999999999999999999887764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.74  E-value=1.3e-17  Score=169.56  Aligned_cols=107  Identities=21%  Similarity=0.224  Sum_probs=94.4

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHcCChhHHHHHHhhCCCCccc-CCCCCchhhhHhh
Q psy7683         314 LALLLDASLEGELELVMKTARLVKDPSAAN----DEGITALHNAICAGHFDIVRFLVQFGCDVNAQ-DSDGWMPLHCAAS  388 (514)
Q Consensus       314 ~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d----~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~-D~~G~TPLh~Aa~  388 (514)
                      .++||.|+..|+.+++++|+++|++++.++    ..|.||||+|+..|+.+++++|+++||++|.+ +..|.||||+|+.
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~  113 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVL  113 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHH
Confidence            456777888889999999999999998874    57999999999999999999999999999986 4579999999999


Q ss_pred             cCchHHHHHHHhcCcccccccCCCCchhhhhh
Q psy7683         389 CNNLAMVRFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       389 ~g~~eivklLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      .|+.+++++|+.+|++++..+..|.|+++.++
T Consensus       114 ~~~~eivklLL~~GAdin~kd~~G~TpL~~A~  145 (300)
T PHA02884        114 HGCLKCLEILLSYGADINIQTNDMVTPIELAL  145 (300)
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            99999999999999999999999999988876

>KOG4177|consensus

Probab=99.74  E-value=5.8e-18  Score=193.50  Aligned_cols=168  Identities=22%  Similarity=0.264  Sum_probs=148.4

Q ss_pred             hcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q psy7683         280 NSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHF  359 (514)
Q Consensus       280 ~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~  359 (514)
                      ..+..+..+|+.+.++.+++.+.+..  .....++++||.|...+...+++.++++|++++.++.+|.||||+||.+|++
T Consensus       476 T~Lhlaaq~Gh~~~~~llle~~~~~~--~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v  553 (1143)
T KOG4177|consen  476 TPLHLAAQEGHTEVVQLLLEGGANDN--LDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNV  553 (1143)
T ss_pred             cchhhhhccCCchHHHHhhhcCCccC--ccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCc
Confidence            34555788899999998888873332  2335789999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhh
Q psy7683         360 DIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE  439 (514)
Q Consensus       360 eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA  439 (514)
                      .+|++||++|+|++.+|+.|+||||.||..|+.+|+++|+++||++|..+.+|.|+++.++   ..|+.+++++|+..++
T Consensus       554 ~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~---~lg~~~~~k~l~~~~~  630 (1143)
T KOG4177|consen  554 DLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAV---RLGYLSVVKLLKVVTA  630 (1143)
T ss_pred             hHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHH---HhcccchhhHHHhccC
Confidence            9999999999999999999999999999999999999999999999999999999999887   8999999999999999


Q ss_pred             h-----cccccccchhhh
Q psy7683         440 K-----LGILNNGAVYAL  452 (514)
Q Consensus       440 d-----~~i~d~~g~taL  452 (514)
                      .     ....+..|.++.
T Consensus       631 ~~~~~~~~~e~~~g~~p~  648 (1143)
T KOG4177|consen  631 TPAATDPVKENRKGAVPE  648 (1143)
T ss_pred             ccccccchhhhhcccChh
Confidence            8     444444444443

>KOG0512|consensus

Probab=99.74  E-value=6.7e-18  Score=154.50  Aligned_cols=154  Identities=23%  Similarity=0.266  Sum_probs=129.2

Q ss_pred             hhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q psy7683         279 INSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGH  358 (514)
Q Consensus       279 l~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~  358 (514)
                      ...+.-++..+.+.+|+.+|++.. +.++..+.++.|+||.|+++|++++|+.|+..|++++.+...||||||-||...+
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~a-n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKA-NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhcc-ccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            334455778889999999998863 4456677899999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhCCCCcccCCCCCchhhhHhhcCch-HHHHHHH-hcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         359 FDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNL-AMVRFLV-EHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       359 ~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~-eivklLL-~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      .+|+-+||++|+|||+.....+||||+||...+. ..+++|+ ..+.+....++.+.++...+.      +..+..+|.+
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iAR------RT~~s~~lfe  216 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIAR------RTSMSHYLFE  216 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHH------HhhhhHHHHH
Confidence            9999999999999999999999999999987654 4566665 558888888888888887654      3445566666


Q ss_pred             hhh
Q psy7683         437 VQE  439 (514)
Q Consensus       437 ~GA  439 (514)
                      .+.
T Consensus       217 ~~e  219 (228)
T KOG0512|consen  217 IVE  219 (228)
T ss_pred             HHH
Confidence            543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.73  E-value=2.6e-17  Score=181.57  Aligned_cols=168  Identities=16%  Similarity=0.142  Sum_probs=136.5

Q ss_pred             chhhhhhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCC----HHHHHHHHHcCC--CCCCCCCCCC
Q psy7683         274 QTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGE----LELVMKTARLVK--DPSAANDEGI  347 (514)
Q Consensus       274 ~~~~il~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~----~~~V~~LL~~ga--d~n~~d~~G~  347 (514)
                      ..+.++..........+++.++.|++.|.....  . ..|.||||+|+..++    .+++++|+++|+  +++.+|..|.
T Consensus       342 ~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~--k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~  418 (672)
T PHA02730        342 IVQAMLINYLHYGDMVSIPILRCMLDNGATMDK--T-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGR  418 (672)
T ss_pred             HHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCc--C-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCC
Confidence            344455555554445679999999999954443  2 578999999988875    899999999998  6899999999


Q ss_pred             cHHHH---HHHcC---------ChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccC-CCCc
Q psy7683         348 TALHN---AICAG---------HFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTH-SDHE  414 (514)
Q Consensus       348 TpLh~---Aa~~g---------~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~-~g~t  414 (514)
                      ||||.   |...+         ..+++++|+.+|+++|.+|..|+||||+|+..++.+++++|+++||+++..+. .|.|
T Consensus       419 T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~T  498 (672)
T PHA02730        419 LCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINT  498 (672)
T ss_pred             chHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcC
Confidence            99994   33332         23569999999999999999999999999999999999999999999999997 4788


Q ss_pred             hhhhhhhhhhcCchhhHHHHHhhhhhccccc
Q psy7683         415 TAAVKCEEDEEGFEGCSEFLYSVQEKLGILN  445 (514)
Q Consensus       415 ~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d  445 (514)
                      +++.++. ...++.+++++|+++|+++....
T Consensus       499 aL~~Aa~-~~~~~~eIv~~LLs~ga~i~~I~  528 (672)
T PHA02730        499 AIQKSSY-RRENKTKLVDLLLSYHPTLETMI  528 (672)
T ss_pred             HHHHHHH-hhcCcHHHHHHHHHcCCCHHHHH
Confidence            8876652 13578999999999999876443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.73  E-value=1.6e-17  Score=183.25  Aligned_cols=147  Identities=14%  Similarity=0.036  Sum_probs=124.2

Q ss_pred             HHHHHHHHHcC-CCCCCccCCCCchhHHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC--ChhHHHH
Q psy7683         291 IAEIKSALKSG-KLGKKRCVSFDPLALLLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAG--HFDIVRF  364 (514)
Q Consensus       291 i~~ik~lL~~g-~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g--~~eiVkl  364 (514)
                      ..+++..++.. +.+  +..+..|.|+||+|+..|   +.++|++||++||+++.+|..|+||||+|+..+  +.++|++
T Consensus        20 ~~~~~~~~~~~~~in--~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~   97 (672)
T PHA02730         20 YKKIKLEIETCHNLS--KHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHL   97 (672)
T ss_pred             HHHHHHHHHHhcchh--hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHH
Confidence            34567777765 333  455678999999999997   599999999999999999999999999999976  7999999


Q ss_pred             HHhhCC--CCcccCCCCCchhhhHhh--cCchHHHHHHHh-cCcccccccC-----CCCchhhhhhhhhhcCchhhHHHH
Q psy7683         365 LVQFGC--DVNAQDSDGWMPLHCAAS--CNNLAMVRFLVE-HGACIFATTH-----SDHETAAVKCEEDEEGFEGCSEFL  434 (514)
Q Consensus       365 LL~~Ga--dvn~~D~~G~TPLh~Aa~--~g~~eivklLL~-~GAdin~~d~-----~g~t~l~~aa~a~~~g~~~~v~lL  434 (514)
                      |+++|+  +++..|..+.+|||.++.  .++.++|++|+. .|++++...+     .|-++..++.   ..++.++|++|
T Consensus        98 Ll~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~---~~~~~eIvklL  174 (672)
T PHA02730         98 LISSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTT---PNPRPEVLLWL  174 (672)
T ss_pred             HHhcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhc---CCCchHHHHHH
Confidence            999965  558888889999999988  899999999997 6789877643     5566666655   89999999999


Q ss_pred             Hhhhhhcc
Q psy7683         435 YSVQEKLG  442 (514)
Q Consensus       435 l~~GAd~~  442 (514)
                      ++.|++++
T Consensus       175 i~~g~~v~  182 (672)
T PHA02730        175 LKSECYST  182 (672)
T ss_pred             HHcCCccc
Confidence            99999984

>KOG0510|consensus

Probab=99.72  E-value=1.6e-17  Score=180.57  Aligned_cols=208  Identities=19%  Similarity=0.207  Sum_probs=117.6

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHH---------
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAI---------  354 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa---------  354 (514)
                      -+...+.++.++.+++.|  ...+..+..+.||||.||..++.+..+.|++.|+++-..|.+|++++|.|+         
T Consensus       127 ~A~~~~~~s~L~~Ll~~~--~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mE  204 (929)
T KOG0510|consen  127 LAADSGNYSCLKLLLDYG--ADVNLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECME  204 (929)
T ss_pred             hccccchHHHHHHHHHhc--CCccccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhh
Confidence            345566677777777776  334445566777777777777777667777777766555545544444444         


Q ss_pred             -----------------------------HcCChhHHHHHHhhCCC---------------CcccCCCCCchhhhHhhcC
Q psy7683         355 -----------------------------CAGHFDIVRFLVQFGCD---------------VNAQDSDGWMPLHCAASCN  390 (514)
Q Consensus       355 -----------------------------~~g~~eiVklLL~~Gad---------------vn~~D~~G~TPLh~Aa~~g  390 (514)
                                                   ..|+.++++.+|+.|+.               +|..|++|.||||+||+.|
T Consensus       205 i~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G  284 (929)
T KOG0510|consen  205 IFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQG  284 (929)
T ss_pred             hhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcC
Confidence                                         44555555555544322               3444556666666666666


Q ss_pred             chHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh-hh-hhcccccccchhhhhhhhcccccccccccC
Q psy7683         391 NLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS-VQ-EKLGILNNGAVYALYDYEANNTDELSFKTG  468 (514)
Q Consensus       391 ~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~-~G-Ad~~i~d~~g~taL~d~~~~~~~eL~~k~g  468 (514)
                      +.++++.|+.+||+++.++.++.+|+|.|+   ..|++++|+-|++ .| ...+..|..|.++++-+...+.+.      
T Consensus       285 ~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA---~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~------  355 (929)
T KOG0510|consen  285 GPESVDNLLGFGASINSKNKDEESPLHFAA---IYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDR------  355 (929)
T ss_pred             ChhHHHHHHHcCCcccccCCCCCCchHHHH---HcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHH------
Confidence            666666666666666666666666666555   5666666666666 22 222333444555555444332221      


Q ss_pred             ceEEEeecCCcccccceee-ccCCCCCCchhhhhhcCCCC
Q psy7683         469 ECIIVLRKGDENEREWWWS-KLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       469 ~~i~vl~~~~~~e~~ww~~-r~~g~~G~~P~~~l~~~~~~  507 (514)
                       ++.+|.+.+.    .... .-.+..|.+++++++.++..
T Consensus       356 -v~qlLl~~GA----~~~~~~e~D~dg~TaLH~Aa~~g~~  390 (929)
T KOG0510|consen  356 -VVQLLLNKGA----LFLNMSEADSDGNTALHLAAKYGNT  390 (929)
T ss_pred             -HHHHHHhcCh----hhhcccccccCCchhhhHHHHhccH
Confidence             2233322110    0110 01167889999999888764

>KOG4177|consensus

Probab=99.71  E-value=2.1e-17  Score=188.95  Aligned_cols=202  Identities=20%  Similarity=0.235  Sum_probs=159.4

Q ss_pred             HHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCC
Q psy7683         291 IAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC  370 (514)
Q Consensus       291 i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Ga  370 (514)
                      .+....++..|..  .+.....|.|+||.|+..|+.+++..|++.++..+.....|.++||.|...++..+++.++++|+
T Consensus       454 ~~~~~~l~~~g~~--~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga  531 (1143)
T KOG4177|consen  454 LQIARLLLQYGAD--PNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGA  531 (1143)
T ss_pred             hhhhhhHhhcCCC--cchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCC
Confidence            3333444444422  23344689999999999999999999999998888877889999999999999999999999999


Q ss_pred             CCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchh
Q psy7683         371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVY  450 (514)
Q Consensus       371 dvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~t  450 (514)
                      +++.++..|.||||.||..|+..+|++||++|||++.+++.|+||+|.+|   ..|+.+|+++|+++||+++..+-.+.+
T Consensus       532 ~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa---~~G~~~i~~LLlk~GA~vna~d~~g~T  608 (1143)
T KOG4177|consen  532 NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAA---QQGHNDIAELLLKHGASVNAADLDGFT  608 (1143)
T ss_pred             ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHH---HcChHHHHHHHHHcCCCCCcccccCcc
Confidence            99999999999999999999999999999999999999999999999998   888999999999999999999999999


Q ss_pred             hhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       451 aL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      +|..+.........    +.+.+.  +.+..  --+.-...++|-+|.++.+++-
T Consensus       609 pL~iA~~lg~~~~~----k~l~~~--~~~~~--~~~~~~e~~~g~~p~~v~e~~~  655 (1143)
T KOG4177|consen  609 PLHIAVRLGYLSVV----KLLKVV--TATPA--ATDPVKENRKGAVPEDVAEELD  655 (1143)
T ss_pred             hhHHHHHhcccchh----hHHHhc--cCccc--cccchhhhhcccChhhHHHHhh
Confidence            99776654433211    011111  11100  1112334678888887766553

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.69  E-value=3.6e-17  Score=186.34  Aligned_cols=171  Identities=19%  Similarity=0.094  Sum_probs=136.1

Q ss_pred             cCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-
Q psy7683         281 SSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLL-DASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGH-  358 (514)
Q Consensus       281 ~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh-~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~-  358 (514)
                      .+..++..|+++.++.+++.+.....++.+..|.|+|| .|+..++.+++++|++.|+    .+..|.|+||+|+..++ 
T Consensus        20 ~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~   95 (743)
T TIGR00870        20 AFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVD   95 (743)
T ss_pred             HHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHH
Confidence            34558889999999999988544455667788999999 8888999999999999987    56789999999997322 


Q ss_pred             --hhHHHHHHhhCCC------Ccc----cCCCCCchhhhHhhcCchHHHHHHHhcCcccccccC--------------CC
Q psy7683         359 --FDIVRFLVQFGCD------VNA----QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTH--------------SD  412 (514)
Q Consensus       359 --~eiVklLL~~Gad------vn~----~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~--------------~g  412 (514)
                        ..++++++..+.+      ++.    .+..|.||||+||.+|+.++|++|+++||+++.++.              .|
T Consensus        96 ~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g  175 (743)
T TIGR00870        96 AVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHG  175 (743)
T ss_pred             HHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccccc
Confidence              2344444444422      111    234699999999999999999999999999986532              47


Q ss_pred             CchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcc
Q psy7683         413 HETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       413 ~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~  458 (514)
                      .++++.++   ..|+.+++++|++.|++++..|..|.++++.+...
T Consensus       176 ~tpL~~Aa---~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~  218 (743)
T TIGR00870       176 ESPLNAAA---CLGSPSIVALLSEDPADILTADSLGNTLLHLLVME  218 (743)
T ss_pred             ccHHHHHH---HhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhh
Confidence            78887776   77899999999999999999999999999866544

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.67  E-value=6.5e-16  Score=157.18  Aligned_cols=144  Identities=17%  Similarity=0.074  Sum_probs=119.7

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCcc--CCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCChhH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRC--VSFDPLALLLDASLEGELELVMKTARLVKDPSAAN-DEGITALHNAICAGHFDI  361 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~--~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d-~~G~TpLh~Aa~~g~~ei  361 (514)
                      +...++.+.++.+++.|.......  .+..|.||||+|+..|+.+++++|+++|+++|.++ ..|.||||+|+..|+.++
T Consensus        40 A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~ei  119 (300)
T PHA02884         40 SIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKC  119 (300)
T ss_pred             HHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHH
Confidence            556788999999999995433221  24579999999999999999999999999999864 579999999999999999


Q ss_pred             HHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhh
Q psy7683         362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE  439 (514)
Q Consensus       362 VklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA  439 (514)
                      +++|+++|++++.+|..|+||||+|+..++.+++.+++.  +.+   +..+.++...+      +..+++++|+.++.
T Consensus       120 vklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~------~n~ei~~~Lish~v  186 (300)
T PHA02884        120 LEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICD--NEI---SNFYKHPKKIL------INFDILKILVSHFI  186 (300)
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcC--Ccc---cccccChhhhh------ccHHHHHHHHHHHH
Confidence            999999999999999999999999999999988876653  332   33445555432      35789999999988

>PHA02792 ankyrin-like protein; Provisional

Probab=99.66  E-value=1.1e-15  Score=167.33  Aligned_cols=199  Identities=14%  Similarity=0.040  Sum_probs=130.1

Q ss_pred             hhhHHHhhhcCCCCCCCCCCcchhhhhhcCCcccCcccHHHHHHHHHcCCCCC---------------------------
Q psy7683         253 NNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGK---------------------------  305 (514)
Q Consensus       253 ~~~i~~~~~~~~~~~~~~~~d~~~~il~~~~~~~~~g~i~~ik~lL~~g~~~~---------------------------  305 (514)
                      .++++-.+.+......-+..+...... .......+++.+.++.||+.|....                           
T Consensus        82 n~~lElvk~LI~~GAdvN~~~n~~~~~-l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  160 (631)
T PHA02792         82 NIDIELLKLLISKGLEINSIKNGINIV-EKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELD  160 (631)
T ss_pred             cccHHHHHHHHHcCCCcccccCCCCcc-eeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhcc
Confidence            345555555555544433332221111 1122356789999999999984310                           


Q ss_pred             -------CccCCCCchhHHHHHHHcC-------CHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc---------------
Q psy7683         306 -------KRCVSFDPLALLLDASLEG-------ELELVMKTARLVKDPSAANDEGITALHNAICA---------------  356 (514)
Q Consensus       306 -------~~~~~~~g~t~Lh~Aa~~g-------~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~---------------  356 (514)
                             .+..+..|.|+||+|+..+       +.++++.|+.+|++++.+|..|.||||+|+.+               
T Consensus       161 ~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~  240 (631)
T PHA02792        161 DYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSN  240 (631)
T ss_pred             ccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhcc
Confidence                   1123455899999999999       89999999999999999999999999999876               


Q ss_pred             --------------------------------------------------------------------------------
Q psy7683         357 --------------------------------------------------------------------------------  356 (514)
Q Consensus       357 --------------------------------------------------------------------------------  356 (514)
                                                                                                      
T Consensus       241 ~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~  320 (631)
T PHA02792        241 YSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVY  320 (631)
T ss_pred             ccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCcc
Confidence                                                                                            


Q ss_pred             -----------------------------CChhHHHHHHhhCCCCcccCCCC--CchhhhHhhcCch---HHHHHHHhcC
Q psy7683         357 -----------------------------GHFDIVRFLVQFGCDVNAQDSDG--WMPLHCAASCNNL---AMVRFLVEHG  402 (514)
Q Consensus       357 -----------------------------g~~eiVklLL~~Gadvn~~D~~G--~TPLh~Aa~~g~~---eivklLL~~G  402 (514)
                                                   |+.++|++|+++||+++.+|.+|  .||||+|+..+..   +++++|+++|
T Consensus       321 ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~G  400 (631)
T PHA02792        321 INVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYI  400 (631)
T ss_pred             HHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcC
Confidence                                         34455666666666666666554  3666665554433   3456666666


Q ss_pred             cccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhh
Q psy7683         403 ACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDY  455 (514)
Q Consensus       403 Adin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~  455 (514)
                      |+++.+|..|.||++.++   ..++.+++++|+++|++++..+..|.+++..+
T Consensus       401 ADIN~kD~~G~TPLh~Aa---~~~n~eivelLLs~GADIN~kD~~G~TpL~~A  450 (631)
T PHA02792        401 DDINKIDKHGRSILYYCI---ESHSVSLVEWLIDNGADINITTKYGSTCIGIC  450 (631)
T ss_pred             CccccccccCcchHHHHH---HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHH
Confidence            666666666666666655   55666666666666666666666666666543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.65  E-value=9.1e-16  Score=167.96  Aligned_cols=151  Identities=17%  Similarity=0.149  Sum_probs=129.1

Q ss_pred             cccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC--CcHHHHHHHcCCh---hHH
Q psy7683         288 NQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEG--ITALHNAICAGHF---DIV  362 (514)
Q Consensus       288 ~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G--~TpLh~Aa~~g~~---eiV  362 (514)
                      .-+++.++.+++.|....    ...+...++.||..|+.++|++|+++||+++.+|..|  .||||+|+.....   +++
T Consensus       318 ~v~ieiIK~LId~Ga~~~----r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~Il  393 (631)
T PHA02792        318 TVYINVIKCMIDEGATLY----RFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSIL  393 (631)
T ss_pred             CccHHHHHHHHHCCCccc----cCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHH
Confidence            457889999999995432    2346778999999999999999999999999998775  6999998876654   468


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhh-------cCchhhHHHHH
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDE-------EGFEGCSEFLY  435 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~-------~g~~~~v~lLl  435 (514)
                      ++|+++||++|.+|..|+||||+|+..++.+++++|+++|++++..+..|.|+++.++....       +...+++++|+
T Consensus       394 klLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLL  473 (631)
T PHA02792        394 KLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIIL  473 (631)
T ss_pred             HHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999998875332       33456799999


Q ss_pred             hhhhhcc
Q psy7683         436 SVQEKLG  442 (514)
Q Consensus       436 ~~GAd~~  442 (514)
                      ++|.++.
T Consensus       474 s~~p~i~  480 (631)
T PHA02792        474 SKLPTIE  480 (631)
T ss_pred             hcCCChh
Confidence            9997764

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.65  E-value=2e-16  Score=145.46  Aligned_cols=99  Identities=16%  Similarity=0.100  Sum_probs=91.8

Q ss_pred             cCCCCchhHHHHHHHcCCH---HHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCChhHHHHHHh-hCCCCcccCCCCCch
Q psy7683         308 CVSFDPLALLLDASLEGEL---ELVMKTARLVKDPSAAN-DEGITALHNAICAGHFDIVRFLVQ-FGCDVNAQDSDGWMP  382 (514)
Q Consensus       308 ~~~~~g~t~Lh~Aa~~g~~---~~V~~LL~~gad~n~~d-~~G~TpLh~Aa~~g~~eiVklLL~-~Gadvn~~D~~G~TP  382 (514)
                      ..+..|.|+||+|+..|+.   +++++|++.|++++.++ ..|+||||+|+..|+.+++++|+. .|++++.+|..|+||
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tp  129 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP  129 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCH
Confidence            3467899999999999987   46889999999999998 489999999999999999999997 599999999999999


Q ss_pred             hhhHhhcCchHHHHHHHhcCcccc
Q psy7683         383 LHCAASCNNLAMVRFLVEHGACIF  406 (514)
Q Consensus       383 Lh~Aa~~g~~eivklLL~~GAdin  406 (514)
                      ||+|+..|+.+++++|+++|++++
T Consensus       130 L~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        130 YYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999875

>PHA02741 hypothetical protein; Provisional

Probab=99.65  E-value=8.3e-16  Score=143.94  Aligned_cols=123  Identities=21%  Similarity=0.118  Sum_probs=106.0

Q ss_pred             cccCcccHHHHHHHHHcC----CCCCCccCCCCchhHHHHHHHcCC----HHHHHHHHHcCCCCCCCCC-CCCcHHHHHH
Q psy7683         284 SDSNNQEIAEIKSALKSG----KLGKKRCVSFDPLALLLDASLEGE----LELVMKTARLVKDPSAAND-EGITALHNAI  354 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g----~~~~~~~~~~~g~t~Lh~Aa~~g~----~~~V~~LL~~gad~n~~d~-~G~TpLh~Aa  354 (514)
                      .++..|+.+.++.++...    .....+..+..|.|+||+|+..|+    .+++++|++.|++++.++. .|+||||+|+
T Consensus        27 ~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~  106 (169)
T PHA02741         27 EAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAA  106 (169)
T ss_pred             HHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHH
Confidence            367788888888775421    112234556789999999999999    5899999999999999985 8999999999


Q ss_pred             HcCChhHHHHHHh-hCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccc
Q psy7683         355 CAGHFDIVRFLVQ-FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIF  406 (514)
Q Consensus       355 ~~g~~eiVklLL~-~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin  406 (514)
                      ..++.+++++|++ .|++++..|.+|+||||+|+..++.+++++|+++++...
T Consensus       107 ~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741        107 HRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATSR  159 (169)
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            9999999999997 599999999999999999999999999999999887643

>KOG0195|consensus

Probab=99.64  E-value=6.4e-17  Score=158.14  Aligned_cols=151  Identities=25%  Similarity=0.273  Sum_probs=130.6

Q ss_pred             HHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHH
Q psy7683         321 SLEGELELVMKTAR-LVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV  399 (514)
Q Consensus       321 a~~g~~~~V~~LL~-~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL  399 (514)
                      |+.|+.-.|++-|+ ..-|.|.-|..|.+||||||..||..+|++||.+|+.+|..+....||||+|+.+||.++|..||
T Consensus         8 cregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll   87 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLL   87 (448)
T ss_pred             hhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHH
Confidence            45565544554444 35688999999999999999999999999999999999999998899999999999999999999


Q ss_pred             hcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh---cccccccccccCceEEEe
Q psy7683         400 EHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE---ANNTDELSFKTGECIIVL  474 (514)
Q Consensus       400 ~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~---~~~~~eL~~k~g~~i~vl  474 (514)
                      ++.+|+|+.+..|.+|++++|   .-|+..+++-|+..||.+++.++.|.+++-.+.   .+.-.+++-+.|+....+
T Consensus        88 ~~kadvnavnehgntplhyac---fwgydqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nri  162 (448)
T KOG0195|consen   88 SRKADVNAVNEHGNTPLHYAC---FWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRI  162 (448)
T ss_pred             HHhcccchhhccCCCchhhhh---hhcHHHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCcc
Confidence            999999999999999999999   789999999999999999999999999987555   344556666677665544

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.63  E-value=4e-15  Score=128.14  Aligned_cols=123  Identities=34%  Similarity=0.456  Sum_probs=114.5

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhc
Q psy7683         310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       310 ~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~  389 (514)
                      +..|.++||+|+..++.+++++|++.|.+.+.++..|.++||+|+..++.+++++|++.|++++..+..|.||+|+|+..
T Consensus         4 ~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204           4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence            35789999999999999999999999999899999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHH
Q psy7683         390 NNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLY  435 (514)
Q Consensus       390 g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl  435 (514)
                      ++.+++++|+.+|.+++..+..+.++++.+.   ..+..+++++|+
T Consensus        84 ~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~~Ll  126 (126)
T cd00204          84 GNLDVVKLLLKHGADVNARDKDGRTPLHLAA---KNGHLEVVKLLL  126 (126)
T ss_pred             CcHHHHHHHHHcCCCCcccCCCCCCHHHHHH---hcCCHHHHHHhC
Confidence            9999999999999999999999998888776   557888888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507|consensus

Probab=99.63  E-value=4.5e-16  Score=168.34  Aligned_cols=153  Identities=20%  Similarity=0.245  Sum_probs=139.3

Q ss_pred             CcccCcccHHHHHHHHHcC-----------CCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHH
Q psy7683         283 PSDSNNQEIAEIKSALKSG-----------KLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALH  351 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g-----------~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh  351 (514)
                      .++...|+++.+..+|+..           .....++.+..|.|+||.||.+|+..++++|++..+-++..|..|.+|||
T Consensus         8 ~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plh   87 (854)
T KOG0507|consen    8 IDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLH   87 (854)
T ss_pred             HHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEE
Confidence            4467778888888888653           22335566789999999999999999999999999989999999999999


Q ss_pred             HHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhH
Q psy7683         352 NAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCS  431 (514)
Q Consensus       352 ~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v  431 (514)
                      +|++.|+.++|++|+..+..+|..+..|.||||.|+++||.+++.+||.+|+|...+++.+++++.++|   +.|..+++
T Consensus        88 laaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~---qfgr~~Vv  164 (854)
T KOG0507|consen   88 LAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLAS---RFGRAEVV  164 (854)
T ss_pred             ehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHH---HhhhhHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999988   88999999


Q ss_pred             HHHHhhh
Q psy7683         432 EFLYSVQ  438 (514)
Q Consensus       432 ~lLl~~G  438 (514)
                      ++|+...
T Consensus       165 q~ll~~~  171 (854)
T KOG0507|consen  165 QMLLQKK  171 (854)
T ss_pred             HHHhhhc
Confidence            9999873

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.62  E-value=1.3e-15  Score=126.72  Aligned_cols=89  Identities=31%  Similarity=0.464  Sum_probs=82.4

Q ss_pred             HHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchh
Q psy7683         350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEG  429 (514)
Q Consensus       350 Lh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~  429 (514)
                      ||+||..|+.+++++|++.|.+++.    |.||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAA---ENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHH---HTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHH---HcCCHH
Confidence            7999999999999999999998887    889999999999999999999999999999999999999987   889999


Q ss_pred             hHHHHHhhhhhccccc
Q psy7683         430 CSEFLYSVQEKLGILN  445 (514)
Q Consensus       430 ~v~lLl~~GAd~~i~d  445 (514)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            9999999999998765

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.61  E-value=2e-15  Score=172.02  Aligned_cols=169  Identities=24%  Similarity=0.230  Sum_probs=125.9

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcC---CHHHHHHHHHcCCC------CC----CCCCCCCcHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEG---ELELVMKTARLVKD------PS----AANDEGITALH  351 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g---~~~~V~~LL~~gad------~n----~~d~~G~TpLh  351 (514)
                      +..+++.+.++.+++.|.      .+..|.|+||.|+..+   ...++..++..+.+      ++    ..+..|.||||
T Consensus        60 A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLh  133 (743)
T TIGR00870        60 AIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALH  133 (743)
T ss_pred             HHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHH
Confidence            556667777777777764      4567999999998722   12333444443322      11    12346999999


Q ss_pred             HHHHcCChhHHHHHHhhCCCCcccC--------------CCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhh
Q psy7683         352 NAICAGHFDIVRFLVQFGCDVNAQD--------------SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAA  417 (514)
Q Consensus       352 ~Aa~~g~~eiVklLL~~Gadvn~~D--------------~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~  417 (514)
                      +||..|+.++|++|+++|++++.++              ..|.||||+|+..|+.+++++|+++|+|++..|..|+|+++
T Consensus       134 lAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh  213 (743)
T TIGR00870       134 LAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLH  213 (743)
T ss_pred             HHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHH
Confidence            9999999999999999999998754              25889999999999999999999999999999999999999


Q ss_pred             hhhhhhh------cCchhhHHHHHhhhhhc-------ccccccchhhhhhhhccc
Q psy7683         418 VKCEEDE------EGFEGCSEFLYSVQEKL-------GILNNGAVYALYDYEANN  459 (514)
Q Consensus       418 ~aa~a~~------~g~~~~v~lLl~~GAd~-------~i~d~~g~taL~d~~~~~  459 (514)
                      .++....      .....|.++++..+++.       ++.|..|.++++.+....
T Consensus       214 ~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g  268 (743)
T TIGR00870       214 LLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEG  268 (743)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcC
Confidence            8874311      11345778888887775       667888888887665443

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0505|consensus

Probab=99.61  E-value=1.5e-15  Score=159.44  Aligned_cols=144  Identities=33%  Similarity=0.562  Sum_probs=128.2

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhc
Q psy7683         310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       310 ~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~  389 (514)
                      .+..--.+..||..|+++-|..||..|++++..+.+|.|+||-||...+.+||++|+++|++||..|..||||||.|+.+
T Consensus        37 ~f~~sa~~l~A~~~~d~~ev~~ll~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   37 RFEDSAVFLEACSRGDLEEVRKLLNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             cCCchHHHHhccccccHHHHHHHhccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhccc
Confidence            34555667789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCccccccc-----------------------------------------------------------C
Q psy7683         390 NNLAMVRFLVEHGACIFATT-----------------------------------------------------------H  410 (514)
Q Consensus       390 g~~eivklLL~~GAdin~~d-----------------------------------------------------------~  410 (514)
                      ||..++++|+.+||++...+                                                           .
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA  196 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence            99999999999999875542                                                           3


Q ss_pred             CCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         411 SDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       411 ~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      .|.|.+|.++   ..|+.++.++|+.+|.++++.|.+|+++|+.+.
T Consensus       197 rG~T~lHvAa---a~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA  239 (527)
T KOG0505|consen  197 RGATALHVAA---ANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAA  239 (527)
T ss_pred             ccchHHHHHH---hhhHHHHHHHHHHhccCcccccccCCCcccHHH
Confidence            3566666555   789999999999999999999999999987444

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.59  E-value=1.7e-14  Score=136.42  Aligned_cols=130  Identities=24%  Similarity=0.262  Sum_probs=121.2

Q ss_pred             CccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC-----hhHHHHHHhhCC---CCcccCC
Q psy7683         306 KRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGH-----FDIVRFLVQFGC---DVNAQDS  377 (514)
Q Consensus       306 ~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~-----~eiVklLL~~Ga---dvn~~D~  377 (514)
                      ....+..+.+++|.++..+...++.+++..|++++.++..|.|+||+|+..++     .+++++|++.|+   ..+.+|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            33444668899999999999999999999999999999999999999999999     999999999999   5666799


Q ss_pred             CCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhh
Q psy7683         378 DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ  438 (514)
Q Consensus       378 ~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~G  438 (514)
                      .|+||||+|+..|+.+++++|++.|++++..+..|.|+++.++   ..++.+++++|+..+
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~---~~~~~~~~~~l~~~~  203 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAA---KNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhc---ccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999988   889999999999987

>KOG3676|consensus

Probab=99.56  E-value=9.6e-15  Score=159.89  Aligned_cols=178  Identities=19%  Similarity=0.130  Sum_probs=142.5

Q ss_pred             hhhhhcCCcccCcccHHHHHHHHHcC---CCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC---------
Q psy7683         276 DRVINSSPSDSNNQEIAEIKSALKSG---KLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAN---------  343 (514)
Q Consensus       276 ~~il~~~~~~~~~g~i~~ik~lL~~g---~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d---------  343 (514)
                      +..+....-....+.-+.++.+|+.-   -.+......+.|.++||.|+.+.+.++|++|++.|||++++.         
T Consensus       144 ET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~d  223 (782)
T KOG3676|consen  144 ETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDD  223 (782)
T ss_pred             hhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCccc
Confidence            33444444444444545666666543   222333445789999999999999999999999999996531         


Q ss_pred             --------------CCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcc--ccc
Q psy7683         344 --------------DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC--IFA  407 (514)
Q Consensus       344 --------------~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAd--in~  407 (514)
                                    ..|..||.+||+.++.+|+++|+++|||++++|..|+|.||..+.+-..+|..++|++|++  ...
T Consensus       224 qk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v  303 (782)
T KOG3676|consen  224 QKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHV  303 (782)
T ss_pred             ccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence                          2478999999999999999999999999999999999999999999999999999999999  999


Q ss_pred             ccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         408 TTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       408 ~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      +|+.|-||+.+||   ..|+.++.+.+++........-+.-...+|+..
T Consensus       304 ~N~qgLTPLtLAa---klGk~emf~~ile~~k~~~W~YGpvtsslYpL~  349 (782)
T KOG3676|consen  304 RNNQGLTPLTLAA---KLGKKEMFQHILERRKFTDWAYGPVTSSLYPLN  349 (782)
T ss_pred             cccCCCChHHHHH---HhhhHHHHHHHHHhhcccceeecccccccccch
Confidence            9999999999988   889999999999996555554444444455444

>KOG4214|consensus

Probab=99.56  E-value=9.1e-15  Score=121.18  Aligned_cols=98  Identities=22%  Similarity=0.288  Sum_probs=87.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHH
Q psy7683         316 LLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMV  395 (514)
Q Consensus       316 ~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eiv  395 (514)
                      -+.|+..+|.++.|+..+..|.++|..- .|++|||||+-+|+.+++++|+..||+++.+|+.|-|||.-|++.||.+||
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            4678999999999999999988877554 799999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccccccCCCCc
Q psy7683         396 RFLVEHGACIFATTHSDHE  414 (514)
Q Consensus       396 klLL~~GAdin~~d~~g~t  414 (514)
                      ++||+.||+.....-+|.+
T Consensus        84 klLL~~GAdrt~~~PdG~~  102 (117)
T KOG4214|consen   84 KLLLQNGADRTIHAPDGTA  102 (117)
T ss_pred             HHHHHcCcccceeCCCchh
Confidence            9999999998776544433

>KOG0507|consensus

Probab=99.52  E-value=3.2e-14  Score=154.17  Aligned_cols=167  Identities=24%  Similarity=0.178  Sum_probs=141.7

Q ss_pred             cCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChh
Q psy7683         281 SSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFD  360 (514)
Q Consensus       281 ~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~e  360 (514)
                      .+.-++-.|+.+.++.++.++  ...+...+.|.++||.|++.|+.++|.+||.+|+|+-.++..+.|+|-+||+.|..+
T Consensus        85 plhlaaw~g~~e~vkmll~q~--d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~  162 (854)
T KOG0507|consen   85 PLHLAAWNGNLEIVKMLLLQT--DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAE  162 (854)
T ss_pred             eEEehhhcCcchHHHHHHhcc--cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhH
Confidence            344567788999999988888  445556678999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhCCCC--------cccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHH
Q psy7683         361 IVRFLVQFGCDV--------NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSE  432 (514)
Q Consensus       361 iVklLL~~Gadv--------n~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~  432 (514)
                      +|++|+....++        ..++-.+.+|||+|+++||.+|++.|+++|.++|... ..++.+|.++   ..|..+||.
T Consensus       163 Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t-~~gtalheaa---lcgk~evvr  238 (854)
T KOG0507|consen  163 VVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTT-EDGTALHEAA---LCGKAEVVR  238 (854)
T ss_pred             HHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCccccc-ccchhhhhHh---hcCcchhhh
Confidence            999998763221        2344567899999999999999999999999999976 5678888766   779999999


Q ss_pred             HHHhhhhhcccccccchhhhh
Q psy7683         433 FLYSVQEKLGILNNGAVYALY  453 (514)
Q Consensus       433 lLl~~GAd~~i~d~~g~taL~  453 (514)
                      +|++.|.+..+.|..+.+++.
T Consensus       239 ~ll~~gin~h~~n~~~qtald  259 (854)
T KOG0507|consen  239 FLLEIGINTHIKNQHGQTALD  259 (854)
T ss_pred             HHHhhccccccccccchHHHH
Confidence            999999999999999888873

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=2.3e-13  Score=153.16  Aligned_cols=102  Identities=27%  Similarity=0.353  Sum_probs=95.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHH
Q psy7683         316 LLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMV  395 (514)
Q Consensus       316 ~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eiv  395 (514)
                      .|+.|+..|+.++|++|++.|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv  164 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVV  164 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHH
Confidence            58889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhc-------CcccccccCCCCchhh
Q psy7683         396 RFLVEH-------GACIFATTHSDHETAA  417 (514)
Q Consensus       396 klLL~~-------GAdin~~d~~g~t~l~  417 (514)
                      ++|+++       |++.+..+..|.++..
T Consensus       165 ~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~  193 (664)
T PTZ00322        165 QLLSRHSQCHFELGANAKPDSFTGKPPSL  193 (664)
T ss_pred             HHHHhCCCcccccCCCCCccccCCCCccc
Confidence            999999       8888888776665544

>KOG3676|consensus

Probab=99.46  E-value=1.4e-13  Score=150.94  Aligned_cols=175  Identities=23%  Similarity=0.207  Sum_probs=138.2

Q ss_pred             ccCcccHHHHHHHHHcCC-------CCCCccCCCCchhHHHHHHHc---CCHHHHHHHHHcCC----CCCCC-CCCCCcH
Q psy7683         285 DSNNQEIAEIKSALKSGK-------LGKKRCVSFDPLALLLDASLE---GELELVMKTARLVK----DPSAA-NDEGITA  349 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~-------~~~~~~~~~~g~t~Lh~Aa~~---g~~~~V~~LL~~ga----d~n~~-d~~G~Tp  349 (514)
                      +...+.++.+..+++.+.       ....+..+..|.|.||.|..+   ++-++++.||+.-.    |+-.- ...|.||
T Consensus       108 ~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSa  187 (782)
T KOG3676|consen  108 ADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSA  187 (782)
T ss_pred             ccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcch
Confidence            334445555544444432       234555578899999999874   45588999988632    22222 2469999


Q ss_pred             HHHHHHcCChhHHHHHHhhCCCCcccCC-----------------------CCCchhhhHhhcCchHHHHHHHhcCcccc
Q psy7683         350 LHNAICAGHFDIVRFLVQFGCDVNAQDS-----------------------DGWMPLHCAASCNNLAMVRFLVEHGACIF  406 (514)
Q Consensus       350 Lh~Aa~~g~~eiVklLL~~Gadvn~~D~-----------------------~G~TPLh~Aa~~g~~eivklLL~~GAdin  406 (514)
                      ||+|+.+.+.++|++|++.||||+++-.                       .|..||.+||..++.+|+++|+++|||++
T Consensus       188 LHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~  267 (782)
T KOG3676|consen  188 LHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPN  267 (782)
T ss_pred             HHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCC
Confidence            9999999999999999999999987531                       37799999999999999999999999999


Q ss_pred             cccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh--cccccccchhhhhhhhcccccc
Q psy7683         407 ATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK--LGILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       407 ~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd--~~i~d~~g~taL~d~~~~~~~e  462 (514)
                      ++|..|+|-+|.+.   ..-..++..+++++|++  ..++|+.|.|+|.-++.....+
T Consensus       268 aqDS~GNTVLH~lV---i~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~e  322 (782)
T KOG3676|consen  268 AQDSNGNTVLHMLV---IHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKE  322 (782)
T ss_pred             ccccCCChHHHHHH---HHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHH
Confidence            99999999998877   44678899999999999  8899999999998777554444

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.43  E-value=6.6e-13  Score=114.22  Aligned_cols=115  Identities=30%  Similarity=0.451  Sum_probs=104.9

Q ss_pred             CCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhh
Q psy7683         341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       341 ~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      .+|..|.||||+|+..|+.+++++|++.|++.+..+..|.||||+|+..++.+++++|+++|++++..+..+.++++.++
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999988998888877


Q ss_pred             hhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcc
Q psy7683         421 EEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       421 ~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~  458 (514)
                         ..++.+++++|+..|.+.+..+..+.++++.+...
T Consensus        82 ---~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~  116 (126)
T cd00204          82 ---RNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKN  116 (126)
T ss_pred             ---HcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence               77889999999999999888888888888766544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4214|consensus

Probab=99.40  E-value=2.9e-13  Score=112.32  Aligned_cols=102  Identities=24%  Similarity=0.284  Sum_probs=93.2

Q ss_pred             HHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCch
Q psy7683         349 ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFE  428 (514)
Q Consensus       349 pLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~  428 (514)
                      -+.|++.+|.++-|+..+..|.++|..- .|++|||||+.+|..++++||+..||+++.+|..|-||++.+.   .+|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAv---wEGH~   80 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAV---WEGHR   80 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHH---HHhhH
Confidence            4689999999999999999998888764 8999999999999999999999999999999999999998877   88999


Q ss_pred             hhHHHHHhhhhhcccccccchhhhhh
Q psy7683         429 GCSEFLYSVQEKLGILNNGAVYALYD  454 (514)
Q Consensus       429 ~~v~lLl~~GAd~~i~d~~g~taL~d  454 (514)
                      +||++|+..||+..+.-.+|.+.+-.
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHHhh
Confidence            99999999999999888888766543

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.40  E-value=2e-13  Score=104.60  Aligned_cols=55  Identities=44%  Similarity=0.544  Sum_probs=32.8

Q ss_pred             HHHcC-CCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhH
Q psy7683         332 TARLV-KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCA  386 (514)
Q Consensus       332 LL~~g-ad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~A  386 (514)
                      ||++| ++++.+|..|+||||+||.+|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            57777 88999999999999999999999999999999999999999999999987

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.39  E-value=4.9e-13  Score=101.40  Aligned_cols=54  Identities=48%  Similarity=0.815  Sum_probs=41.6

Q ss_pred             CCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHH
Q psy7683         346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV  399 (514)
Q Consensus       346 G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL  399 (514)
                      |+|+||+||..|+.+++++|+++|+++|.+|.+|+||||+|+..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            678888888888888888888888888888888888888888888888888886

...

>KOG1710|consensus

Probab=99.38  E-value=1.7e-12  Score=127.32  Aligned_cols=122  Identities=19%  Similarity=0.177  Sum_probs=95.6

Q ss_pred             hhhhhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCC-CCCCCcHHHHHH
Q psy7683         276 DRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAA-NDEGITALHNAI  354 (514)
Q Consensus       276 ~~il~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~-d~~G~TpLh~Aa  354 (514)
                      +.....+.+....++.+....+|..  +...++.|.+|+++|..|++.|++++|++||+.|+|+|.. +..++||||+|+
T Consensus        10 d~~~~~Lle~i~Kndt~~a~~LLs~--vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen   10 DAPKSPLLEAIDKNDTEAALALLST--VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             cchhhHHHHHHccCcHHHHHHHHHH--hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            3344445556777788888888776  3445667778888888888888888888888888888754 556888888888


Q ss_pred             HcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHH
Q psy7683         355 CAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV  399 (514)
Q Consensus       355 ~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL  399 (514)
                      ..|+.++.++|++.|+.+...+.-|+|+-..|+.-|+.+||..+=
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            888888888888888888888888888888888888888888653

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.33  E-value=7.8e-12  Score=118.23  Aligned_cols=116  Identities=27%  Similarity=0.311  Sum_probs=103.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCC-----HHHHHHHHHcCC---CCCCCCCCCCcHHHHHHHc
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGE-----LELVMKTARLVK---DPSAANDEGITALHNAICA  356 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~-----~~~V~~LL~~ga---d~n~~d~~G~TpLh~Aa~~  356 (514)
                      +...++.+.++.++..|...  ...+..|.|+||+|+..++     .+++++||+.|+   +.+.+|..|+||||+|+..
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~--~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~  157 (235)
T COG0666          80 AASKGDDKIVKLLLASGADV--NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALN  157 (235)
T ss_pred             HHHcCcHHHHHHHHHcCCCc--ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHc
Confidence            44456666777777777433  5566899999999999999     999999999999   5666699999999999999


Q ss_pred             CChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcC
Q psy7683         357 GHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG  402 (514)
Q Consensus       357 g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~G  402 (514)
                      |+.+++++|++.|++++..+..|.|+|++|+..++.+++++|++.+
T Consensus       158 ~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         158 GDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999987

>KOG1710|consensus

Probab=99.33  E-value=2.9e-12  Score=125.73  Aligned_cols=123  Identities=24%  Similarity=0.401  Sum_probs=110.8

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcc-cCCCCCchhhhHhhcC
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA-QDSDGWMPLHCAASCN  390 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~-~D~~G~TPLh~Aa~~g  390 (514)
                      ....+|..+...++.+....||...-++|.+|..|.++|..|+..|+.++|++||+.|+|||. ++..+.||||+|+..|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            456789999999999999999988667999999999999999999999999999999999997 4567889999999999


Q ss_pred             chHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         391 NLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       391 ~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      +.++.++|++.|+.....+.-|+|+...++   .-|+.+||..+-.+
T Consensus        91 n~dvcrllldaGa~~~~vNsvgrTAaqmAA---FVG~H~CV~iINN~  134 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLVNSVGRTAAQMAA---FVGHHECVAIINNH  134 (396)
T ss_pred             CchHHHHHHhccCccccccchhhhHHHHHH---HhcchHHHHHHhcc
Confidence            999999999999999999999999998887   67888888766443

>KOG4369|consensus

Probab=99.30  E-value=1.7e-12  Score=144.46  Aligned_cols=174  Identities=18%  Similarity=0.145  Sum_probs=140.3

Q ss_pred             hcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCC
Q psy7683         280 NSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAN-DEGITALHNAICAGH  358 (514)
Q Consensus       280 ~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d-~~G~TpLh~Aa~~g~  358 (514)
                      .-+..+..-|.++.|..+|..|.....+....-|..||++|...|+...++.||+.|.|+|..- .+.+|+|-+||..|+
T Consensus       859 tPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr  938 (2131)
T KOG4369|consen  859 TPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGR  938 (2131)
T ss_pred             CchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCc
Confidence            3344466778888999999999766666777788999999999999999999999999998753 467899999999999


Q ss_pred             hhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccC--CCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         359 FDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTH--SDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       359 ~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~--~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      .++|.+||.+.+++..+-+.|.|||+-++..|.+++-++||..|||++..--  ...|.+...+   ..|+...|++|+.
T Consensus       939 ~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPvp~T~dtalti~a---~kGh~kfv~~lln 1015 (2131)
T KOG4369|consen  939 PEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPVPNTWDTALTIPA---NKGHTKFVPKLLN 1015 (2131)
T ss_pred             chHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCCCCcCCccceeec---CCCchhhhHHhhC
Confidence            9999999999999999999999999999999999999999999999876432  2233443333   7788888888888


Q ss_pred             hhhhcccccccchhhhhhhh
Q psy7683         437 VQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       437 ~GAd~~i~d~~g~taL~d~~  456 (514)
                      ..|-+.+.|.+|+++|+..+
T Consensus      1016 ~~atv~v~NkkG~T~Lwla~ 1035 (2131)
T KOG4369|consen 1016 GDATVRVPNKKGCTVLWLAS 1035 (2131)
T ss_pred             CccceecccCCCCcccchhc
Confidence            88888888888877776433

>KOG0515|consensus

Probab=99.30  E-value=4.9e-12  Score=132.35  Aligned_cols=121  Identities=17%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             hhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC
Q psy7683         279 INSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGH  358 (514)
Q Consensus       279 l~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~  358 (514)
                      +..+..++.+|.++.|+..+.+-..  ...-+..|.|+||-|++.||+++|+||++.|+++|..|.+||||||+|+..++
T Consensus       551 LaLLLDaaLeGEldlVq~~i~ev~D--pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNn  628 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIYEVTD--PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNN  628 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHHhhcC--CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCc
Confidence            3456668889999999999987532  22345689999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhhCCCCcccC-CCCCchhhhHh--hcCchHHHHHHHhc
Q psy7683         359 FDIVRFLVQFGCDVNAQD-SDGWMPLHCAA--SCNNLAMVRFLVEH  401 (514)
Q Consensus       359 ~eiVklLL~~Gadvn~~D-~~G~TPLh~Aa--~~g~~eivklLL~~  401 (514)
                      +.+|+.|++.|+-|-+.. .++.|+..-+-  ..|..+|.+||-..
T Consensus       629 v~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  629 VPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             hHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence            999999999999886644 46678876543  35788999999643

>KOG4369|consensus

Probab=99.27  E-value=4.7e-12  Score=140.92  Aligned_cols=172  Identities=17%  Similarity=0.126  Sum_probs=122.4

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++.-|++..|..+++.... .....+.++.|+|-+||..|..++|++||..|++-..++...+|||.+|...|..++|.+
T Consensus       797 aatagh~tvV~~llk~ha~-veaQsdrtkdt~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~  875 (2131)
T KOG4369|consen  797 AATAGHITVVQDLLKAHAD-VEAQSDRTKDTMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHA  875 (2131)
T ss_pred             hcccCchHHHHHHHhhhhh-hhhhcccccCceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHH
Confidence            4445566666666655422 122234566666777777777777777777777766677677777777777777777777


Q ss_pred             HHhhCCCCcccC--CCCCchhhhHhhcCchHHHHHHHhcCcccccccCC-CCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         365 LVQFGCDVNAQD--SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS-DHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       365 LL~~Gadvn~~D--~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~-g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      ||.+|+.||.+.  +.|-.||++|.++||.+.++.||+.|-|+|..-.- .+|.+.++|   ..|+.+++.+||.+.+++
T Consensus       876 llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~---fqgr~evv~lLLa~~anv  952 (2131)
T KOG4369|consen  876 LLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLAL---FQGRPEVVFLLLAAQANV  952 (2131)
T ss_pred             HhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecc---ccCcchHHHHHHHHhhhh
Confidence            777777777654  35678888888888888888888888888765443 345555555   788999999999999999


Q ss_pred             ccccccchhhhhhhhcccc
Q psy7683         442 GILNNGAVYALYDYEANNT  460 (514)
Q Consensus       442 ~i~d~~g~taL~d~~~~~~  460 (514)
                      ..+...|.++|+.+.....
T Consensus       953 ehRaktgltplme~AsgGy  971 (2131)
T KOG4369|consen  953 EHRAKTGLTPLMEMASGGY  971 (2131)
T ss_pred             hhhcccCCcccchhhcCCc
Confidence            9999999999987664433

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.27  E-value=9.2e-12  Score=140.26  Aligned_cols=106  Identities=23%  Similarity=0.237  Sum_probs=96.4

Q ss_pred             cHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCc
Q psy7683         348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGF  427 (514)
Q Consensus       348 TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~  427 (514)
                      +.||.|+..|+.++|++|+++|+++|.+|..|+||||+||..|+.+++++|+++|++++..|..|.|++++++   ..|+
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~---~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAE---ENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---HCCc
Confidence            3589999999999999999999999999999999999999999999999999999999999999999999887   7899


Q ss_pred             hhhHHHHHhh-------hhhcccccccchhhhhhhh
Q psy7683         428 EGCSEFLYSV-------QEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       428 ~~~v~lLl~~-------GAd~~i~d~~g~taL~d~~  456 (514)
                      .+++++|+++       |++.+..+..|.+++....
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999999999       8888877776666654333

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.27  E-value=8.9e-12  Score=94.44  Aligned_cols=54  Identities=35%  Similarity=0.410  Sum_probs=46.6

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHH
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLV  366 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL  366 (514)
                      |+|+||+||..|+.+++++|++.|++++.+|.+|+||||+||..|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            679999999999999999999999999999999999999999999999999996

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.17  E-value=1.6e-11  Score=94.10  Aligned_cols=55  Identities=36%  Similarity=0.474  Sum_probs=33.0

Q ss_pred             HHhhC-CCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhh
Q psy7683         365 LVQFG-CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVK  419 (514)
Q Consensus       365 LL~~G-advn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~a  419 (514)
                      ||++| ++++.+|..|.||||+||..|+.++|++|+++|++++.+|..|+||+++|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            67888 99999999999999999999999999999999999999999999999864

>KOG0506|consensus

Probab=98.84  E-value=3.4e-09  Score=110.27  Aligned_cols=90  Identities=28%  Similarity=0.380  Sum_probs=67.2

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHh-hCCCCcccCCCCCchhhhHhhcC
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ-FGCDVNAQDSDGWMPLHCAASCN  390 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~-~Gadvn~~D~~G~TPLh~Aa~~g  390 (514)
                      ++.-.+++|++.|++..++.+.-.|.|++.+|.+.+|+||.||..|++++|++||+ .+.+++.+|++|+|||.-|..++
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~  584 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFK  584 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcC
Confidence            34556677777777777777777777777777777777777777777777777775 47777777777777777777777


Q ss_pred             chHHHHHHHhc
Q psy7683         391 NLAMVRFLVEH  401 (514)
Q Consensus       391 ~~eivklLL~~  401 (514)
                      |.+++++|-++
T Consensus       585 h~~v~k~L~~~  595 (622)
T KOG0506|consen  585 HKEVVKLLEEA  595 (622)
T ss_pred             cHHHHHHHHHH
Confidence            77777777654

>KOG0783|consensus

Probab=98.80  E-value=2.3e-09  Score=117.40  Aligned_cols=96  Identities=21%  Similarity=0.193  Sum_probs=76.0

Q ss_pred             HHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCChhHHHHHHhhCCC
Q psy7683         293 EIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAND-EGITALHNAICAGHFDIVRFLVQFGCD  371 (514)
Q Consensus       293 ~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~-~G~TpLh~Aa~~g~~eiVklLL~~Gad  371 (514)
                      .++.++.....+..+..|..|+++||.|+..+...+++|||++|+|++.+|. .|+||||.|..+|+++|+-+||.+|+.
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            4677776665555666677788888888888888888888888888888876 488888888888888888888888888


Q ss_pred             CcccCCCCCchhhhHhh
Q psy7683         372 VNAQDSDGWMPLHCAAS  388 (514)
Q Consensus       372 vn~~D~~G~TPLh~Aa~  388 (514)
                      +..+|++|..||.+-++
T Consensus       112 L~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  112 LRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             eEEecccCCCHHHHHhh
Confidence            88888888888887665

>KOG0783|consensus

Probab=98.78  E-value=2.7e-09  Score=116.85  Aligned_cols=83  Identities=25%  Similarity=0.366  Sum_probs=79.3

Q ss_pred             CCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCC-CCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhh
Q psy7683         339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDS-DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAA  417 (514)
Q Consensus       339 ~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~-~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~  417 (514)
                      .|.+|..|+|+||+|+..+..+++++||++|+|++.+|. .|+||||.|..+|+++|+-+||++|+.+...|.+|..|+.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            678999999999999999999999999999999999997 5999999999999999999999999999999999999998


Q ss_pred             hhhh
Q psy7683         418 VKCE  421 (514)
Q Consensus       418 ~aa~  421 (514)
                      ..+.
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8874

>KOG0818|consensus

Probab=98.76  E-value=2.2e-08  Score=104.62  Aligned_cols=87  Identities=29%  Similarity=0.342  Sum_probs=80.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchH
Q psy7683         315 ALLLDASLEGELELVMKTARLVKDPSAAND-EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLA  393 (514)
Q Consensus       315 t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~-~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~e  393 (514)
                      .-||..++.|+++..-.||..||++|..+. .|.||||.|+..|+.--+++|+-+|||++..|.+|+||+.||-..||.+
T Consensus       135 rQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~  214 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHE  214 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchH
Confidence            358999999999999999999999999876 5999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHhc
Q psy7683         394 MVRFLVEH  401 (514)
Q Consensus       394 ivklLL~~  401 (514)
                      +.+-|++.
T Consensus       215 laeRl~e~  222 (669)
T KOG0818|consen  215 LAERLVEI  222 (669)
T ss_pred             HHHHHHHH
Confidence            88777764

>KOG0705|consensus

Probab=98.65  E-value=5e-08  Score=103.70  Aligned_cols=90  Identities=24%  Similarity=0.316  Sum_probs=79.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCC--CC--CCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         316 LLLDASLEGELELVMKTARLVKD--PS--AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       316 ~Lh~Aa~~g~~~~V~~LL~~gad--~n--~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      -|..|....++..+.+||.+|..  +|  ..+.+|+|+||+||..|++.+.++|+-+|+|+-.+|..|+|+|.||-+.|.
T Consensus       627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~s  706 (749)
T KOG0705|consen  627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGS  706 (749)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhccc
Confidence            45668888889999999999864  33  235678999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCccc
Q psy7683         392 LAMVRFLVEHGACI  405 (514)
Q Consensus       392 ~eivklLL~~GAdi  405 (514)
                      -+|+.+||.+|+..
T Consensus       707 qec~d~llq~gcp~  720 (749)
T KOG0705|consen  707 QECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHHcCCCc
Confidence            99999999999865

>KOG0818|consensus

Probab=98.64  E-value=1.1e-07  Score=99.48  Aligned_cols=100  Identities=25%  Similarity=0.327  Sum_probs=88.0

Q ss_pred             CCCCCCCCCcH------HHHHHHcCChhHHHHHHhhCCCCcccCC-CCCchhhhHhhcCchHHHHHHHhcCcccccccCC
Q psy7683         339 PSAANDEGITA------LHNAICAGHFDIVRFLVQFGCDVNAQDS-DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS  411 (514)
Q Consensus       339 ~n~~d~~G~Tp------Lh~Aa~~g~~eiVklLL~~Gadvn~~D~-~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~  411 (514)
                      .-.+|.+|.++      ||.+++.|+.++.-.||..||++|..+- .|.||||.|++.|+.--+++|+-+|||+...|.+
T Consensus       120 ~~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~  199 (669)
T KOG0818|consen  120 LPCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSS  199 (669)
T ss_pred             CCCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCC
Confidence            44567777664      9999999999999889999999998774 6899999999999999999999999999999999


Q ss_pred             CCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         412 DHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       412 g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      |.||+.++-   ..|+.++.+.|++..-++
T Consensus       200 GmtP~~~AR---~~gH~~laeRl~e~~y~v  226 (669)
T KOG0818|consen  200 GMTPVDYAR---QGGHHELAERLVEIQYEL  226 (669)
T ss_pred             CCcHHHHHH---hcCchHHHHHHHHHHHHH
Confidence            999998886   789999999888875443

>KOG0782|consensus

Probab=98.58  E-value=1.2e-07  Score=100.43  Aligned_cols=118  Identities=24%  Similarity=0.275  Sum_probs=100.9

Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCC--CcccCCCCCchhhhHhhcCchHH
Q psy7683         317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCD--VNAQDSDGWMPLHCAASCNNLAM  394 (514)
Q Consensus       317 Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gad--vn~~D~~G~TPLh~Aa~~g~~ei  394 (514)
                      +..|+..+++--++.+...|.++-.++.+..+.||||+..|+-++|+|+|++|..  +++.|..|.|+||-|+..++..+
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~v  949 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAV  949 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHH
Confidence            5567778887777777778888888888899999999999999999999999864  57788899999999999999999


Q ss_pred             HHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         395 VRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       395 vklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      ..+|++.||.+...|..|.||-..+-   ..|..+++.||-.+
T Consensus       950 c~~lvdagasl~ktd~kg~tp~eraq---qa~d~dlaayle~r  989 (1004)
T KOG0782|consen  950 CQLLVDAGASLRKTDSKGKTPQERAQ---QAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHhcchhheecccCCCChHHHHH---hcCCchHHHHHhhh
Confidence            99999999999999999999887654   67888888888654

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=98.57  E-value=2e-08  Score=74.82  Aligned_cols=49  Identities=49%  Similarity=0.999  Sum_probs=42.7

Q ss_pred             hhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       451 aL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                      |+|+|.+...++|.|+.|+++.|+.+.+++   ||+++..|+.|+||.+||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSDDG---WWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESSTS---EEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCCCC---EEEEEECCEEEEECHHhCC
Confidence            578999999999999999999999886555   9999999999999999974

...

>KOG0506|consensus

Probab=98.56  E-value=8.7e-08  Score=99.96  Aligned_cols=96  Identities=17%  Similarity=0.171  Sum_probs=87.4

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhc-CcccccccCCCCchhhhhhhh
Q psy7683         344 DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH-GACIFATTHSDHETAAVKCEE  422 (514)
Q Consensus       344 ~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~-GAdin~~d~~g~t~l~~aa~a  422 (514)
                      .++...+++|+..|.+..++.+.-.|.|++.+|.+.+|+||.|+..|+.+++++||+. +.+++.+|.+|++|+..+.  
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~--  581 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK--  581 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH--
Confidence            4566789999999999999998889999999999999999999999999999999987 8999999999999998776  


Q ss_pred             hhcCchhhHHHHHhhhhhcc
Q psy7683         423 DEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       423 ~~~g~~~~v~lLl~~GAd~~  442 (514)
                       ..++.+|+++|.++.....
T Consensus       582 -~F~h~~v~k~L~~~~~~y~  600 (622)
T KOG0506|consen  582 -HFKHKEVVKLLEEAQYPYT  600 (622)
T ss_pred             -hcCcHHHHHHHHHHhcccc
Confidence             8899999999988765443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.56  E-value=6.9e-08  Score=64.42  Aligned_cols=28  Identities=46%  Similarity=0.810  Sum_probs=15.6

Q ss_pred             CCcHHHHHHHcCChhHHHHHHhhCCCCc
Q psy7683         346 GITALHNAICAGHFDIVRFLVQFGCDVN  373 (514)
Q Consensus       346 G~TpLh~Aa~~g~~eiVklLL~~Gadvn  373 (514)
                      |+||||+||..|+.++|++||++|+|+|
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            5555555555555555555555555554

>PF13606 Ank_3: Ankyrin repeat

Probab=98.54  E-value=6e-08  Score=64.72  Aligned_cols=30  Identities=50%  Similarity=0.780  Sum_probs=28.2

Q ss_pred             CCCchhhhHhhcCchHHHHHHHhcCccccc
Q psy7683         378 DGWMPLHCAASCNNLAMVRFLVEHGACIFA  407 (514)
Q Consensus       378 ~G~TPLh~Aa~~g~~eivklLL~~GAdin~  407 (514)
                      +|+||||+||..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999873

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.53  E-value=1e-07  Score=64.75  Aligned_cols=31  Identities=52%  Similarity=0.794  Sum_probs=19.2

Q ss_pred             CCcHHHHHHHcCChhHHHHHHhhCCCCcccC
Q psy7683         346 GITALHNAICAGHFDIVRFLVQFGCDVNAQD  376 (514)
Q Consensus       346 G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D  376 (514)
                      |+||||+||..|+.+++++|+++|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666666554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.48  E-value=1.1e-07  Score=64.64  Aligned_cols=33  Identities=42%  Similarity=0.604  Sum_probs=31.0

Q ss_pred             CCCchhhhHhhcCchHHHHHHHhcCcccccccC
Q psy7683         378 DGWMPLHCAASCNNLAMVRFLVEHGACIFATTH  410 (514)
Q Consensus       378 ~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~  410 (514)
                      +|+||||+|+..|+.+++++||++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522|consensus

Probab=98.48  E-value=2.3e-07  Score=98.33  Aligned_cols=87  Identities=26%  Similarity=0.382  Sum_probs=75.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCch
Q psy7683         315 ALLLDASLEGELELVMKTARL--VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNL  392 (514)
Q Consensus       315 t~Lh~Aa~~g~~~~V~~LL~~--gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~  392 (514)
                      .+||++....+.+-+..++..  +..++.+|..|+||||+|+..|+.++++.|+..||++..+|..||++||.|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            568889888887666654433  457889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhc
Q psy7683         393 AMVRFLVEH  401 (514)
Q Consensus       393 eivklLL~~  401 (514)
                      +++..+|.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            888777754

>KOG0705|consensus

Probab=98.39  E-value=6.2e-07  Score=95.57  Aligned_cols=132  Identities=19%  Similarity=0.141  Sum_probs=96.0

Q ss_pred             CCCCCCCCCCchhhhhhHHHhhhcCCCCCCCCCCcchhhhhhcCCcccCcccHHHHHHHHHcCCC--CCCccCCCCchhH
Q psy7683         239 PPLPTTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKL--GKKRCVSFDPLAL  316 (514)
Q Consensus       239 ~~~~~s~~s~~~~~~~~i~~~~~~~~~~~~~~~~d~~~~il~~~~~~~~~g~i~~ik~lL~~g~~--~~~~~~~~~g~t~  316 (514)
                      -..+++..+.-++....|...++.+-+-....+.+  ..+-..+..+....|+..+..||..|..  ....+.+-+|.|+
T Consensus       587 G~~KPs~~s~REEkErwIr~KYeqklFLaPl~~te--~~lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~  664 (749)
T KOG0705|consen  587 GQTKPSPDSSREEKERWIRAKYEQKLFLAPLPCTE--EPLGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTA  664 (749)
T ss_pred             CCcCCCccccHHHHHHHHHHHHHHHhhcCCCCCCC--CchHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcch
Confidence            33444555555555566776666555543333222  1122223345566778888888888732  2333445677999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCC
Q psy7683         317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV  372 (514)
Q Consensus       317 Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadv  372 (514)
                      ||+||..|++.+.++|+-+|+|+-.+|..|+|+|.||-..|..+|+..||.+|+.-
T Consensus       665 LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~  720 (749)
T KOG0705|consen  665 LHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPD  720 (749)
T ss_pred             hhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCc
Confidence            99999999999999999999999999999999999999999999999999999754

>KOG0782|consensus

Probab=98.36  E-value=5.2e-07  Score=95.71  Aligned_cols=112  Identities=22%  Similarity=0.278  Sum_probs=93.2

Q ss_pred             cccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCC--CCCCCCCCCcHHHHHHHcCChhHHHHH
Q psy7683         288 NQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKD--PSAANDEGITALHNAICAGHFDIVRFL  365 (514)
Q Consensus       288 ~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad--~n~~d~~G~TpLh~Aa~~g~~eiVklL  365 (514)
                      .+|+-.+++.-..|...  -..+.+..++||+|+..|+-++|+++|++|..  ++..|..|.|+||.|+..++..++.+|
T Consensus       876 ~~D~~klqE~h~~gg~l--l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~l  953 (1004)
T KOG0782|consen  876 SSDLMKLQETHLNGGSL--LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLL  953 (1004)
T ss_pred             hccHHHHHHHHhcCCce--EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHH
Confidence            34444444444444222  22345778999999999999999999999863  677888999999999999999999999


Q ss_pred             HhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhc
Q psy7683         366 VQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH  401 (514)
Q Consensus       366 L~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~  401 (514)
                      ++.|+.+...|..|.||-..|-+.|..+++.||-.+
T Consensus       954 vdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  954 VDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999999999999998654

>KOG0520|consensus

Probab=98.34  E-value=6.6e-07  Score=101.45  Aligned_cols=130  Identities=22%  Similarity=0.248  Sum_probs=103.3

Q ss_pred             CCCccCCCCchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHH-hhCCCCcccCCCCCc
Q psy7683         304 GKKRCVSFDPLALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWM  381 (514)
Q Consensus       304 ~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL-~~Gadvn~~D~~G~T  381 (514)
                      .........|++.+|+++..++..+++.+++- |......|.+|.-.+|+ |..++++++-+|+ -.|..++.+|..|||
T Consensus       565 ~~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~t  643 (975)
T KOG0520|consen  565 NLSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWT  643 (975)
T ss_pred             hccccCCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCc
Confidence            33445567899999999999999999999996 66666778888889999 5556666665555 479999999999999


Q ss_pred             hhhhHhhcCchHHHHHHHhcCcccccccC------CCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         382 PLHCAASCNNLAMVRFLVEHGACIFATTH------SDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       382 PLh~Aa~~g~~eivklLL~~GAdin~~d~------~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      |||||+.+|+..++..|++.|++.....+      .|.|....+.   ..|+.++..||-+.
T Consensus       644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~---s~g~~gia~~lse~  702 (975)
T KOG0520|consen  644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLAR---ANGHKGIAGYLSEK  702 (975)
T ss_pred             ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhh---cccccchHHHHhhh
Confidence            99999999999999999998887654322      3455554443   78888888888766

>KOG2384|consensus

Probab=98.29  E-value=1.3e-06  Score=81.90  Aligned_cols=86  Identities=24%  Similarity=0.224  Sum_probs=73.5

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhC-CCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCc
Q psy7683         336 VKDPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHE  414 (514)
Q Consensus       336 gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~G-advn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t  414 (514)
                      +.++|.+|..|||+|+.|+..|..+.|.||+.+| ++|...|..|.+++.+|-+.|+.++|+.|.+.-.+-...++.-.+
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~nss~~   81 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMNSSRD   81 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcccCCCC
Confidence            4578999999999999999999999999999999 899999999999999999999999999999886666666666666


Q ss_pred             hhhhhhh
Q psy7683         415 TAAVKCE  421 (514)
Q Consensus       415 ~l~~aa~  421 (514)
                      ....+|+
T Consensus        82 e~lfyCE   88 (223)
T KOG2384|consen   82 EALFYCE   88 (223)
T ss_pred             Cccchhh
Confidence            6666664

>KOG0511|consensus

Probab=98.23  E-value=2.4e-06  Score=87.37  Aligned_cols=126  Identities=20%  Similarity=0.192  Sum_probs=85.7

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCch
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNL  392 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~  392 (514)
                      +.--|+.||+.|+++.|+.|++.|.++|.+|.....||.+|+..||.++|++||++||-...-..+|... ||++.+.  
T Consensus        36 ~f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC-~YgaLnd--  112 (516)
T KOG0511|consen   36 PFGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC-HYGALND--  112 (516)
T ss_pred             chHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh-hhhhhhH--
Confidence            3556899999999999999999999999999999999999999999999999999998766555566554 5555443  


Q ss_pred             HHHHHHHhcCcccccccCCCCchhhhhh--hhhhcCchhhHHHHHhhhhhcc
Q psy7683         393 AMVRFLVEHGACIFATTHSDHETAAVKC--EEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       393 eivklLL~~GAdin~~d~~g~t~l~~aa--~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      .|=+.||.+..-. +.|.......+.-.  .....|...-+.++...|+.++
T Consensus       113 ~IR~mllsydi~K-A~d~~qP~aahi~s~l~dt~l~~~~di~f~~q~g~~f~  163 (516)
T KOG0511|consen  113 RIRRMLLSYDILK-AFDARQPPAAHIQSSLRDTFLGCCHDIDFLQQEGANFD  163 (516)
T ss_pred             HHHHHHHHHHHHH-HhhccCCcchHHHHHhhccccccccchHHHhhcccccc
Confidence            3445666653221 11111111111111  1122344445667777777764

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=98.21  E-value=4.6e-07  Score=69.03  Aligned_cols=51  Identities=41%  Similarity=0.841  Sum_probs=42.9

Q ss_pred             hhhhhhhcccccccccccCceEEEe-ecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         450 YALYDYEANNTDELSFKTGECIIVL-RKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       450 taL~d~~~~~~~eL~~k~g~~i~vl-~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      .++++|.+....+|.|++|+++.|+ .+.++   +||+++..|+.|+||.+||++
T Consensus         3 ~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~~---~ww~~~~~g~~G~~P~~~v~~   54 (55)
T PF07653_consen    3 RAIFDYVAEDPDELSFKKGDVIEVLGEKDDD---GWWLGENNGRRGWFPSSYVEE   54 (55)
T ss_dssp             EESSSBESSSTTB-EB-TTEEEEEEEEECST---SEEEEEETTEEEEEEGGGEEE
T ss_pred             EEeEEECCCCCCceEEecCCEEEEEEeecCC---CEEEEEECCcEEEEcHHHEEE
Confidence            4678899999999999999999999 55444   499999999999999999875

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG3609|consensus

Probab=98.12  E-value=2.6e-06  Score=94.98  Aligned_cols=121  Identities=22%  Similarity=0.180  Sum_probs=100.5

Q ss_pred             CCcccCcccHHHHHHHHHcCCC--CCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKL--GKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHF  359 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~--~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~  359 (514)
                      +..+..+|++..+++.++....  ...+|.|.-|+++|+.|..+.+.+++++|+++....       .-+|.+|+..|.+
T Consensus        29 fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v  101 (822)
T KOG3609|consen   29 FLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSV  101 (822)
T ss_pred             HHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHH
Confidence            4446788999999999988765  667888999999999999999999999999987654       2489999999999


Q ss_pred             hHHHHHHhhCCCCc----c------cCCCCCchhhhHhhcCchHHHHHHHhcCccccccc
Q psy7683         360 DIVRFLVQFGCDVN----A------QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT  409 (514)
Q Consensus       360 eiVklLL~~Gadvn----~------~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d  409 (514)
                      ++|++++.+-....    .      .-.-+.|||++||..+++||+++||.+|+++....
T Consensus       102 ~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~PH  161 (822)
T KOG3609|consen  102 PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIPH  161 (822)
T ss_pred             HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCCc
Confidence            99999998643321    1      11246799999999999999999999999986543

>KOG0511|consensus

Probab=98.10  E-value=8.8e-06  Score=83.29  Aligned_cols=69  Identities=16%  Similarity=0.050  Sum_probs=37.4

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAIC  355 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~  355 (514)
                      .++..|+++.++.+++.|  ...+..+.....||.+|+..||.++|++||++||-...-..+|.- .||++.
T Consensus        42 eacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~R-C~YgaL  110 (516)
T KOG0511|consen   42 EACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDR-CHYGAL  110 (516)
T ss_pred             HHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcch-hhhhhh
Confidence            355666666666666655  122233344455666666666666666666666644433333432 234444

>KOG0521|consensus

Probab=98.06  E-value=3.8e-06  Score=95.66  Aligned_cols=101  Identities=26%  Similarity=0.228  Sum_probs=83.0

Q ss_pred             HcCCHHHHHHHHHcCCCCCCC--CCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHH
Q psy7683         322 LEGELELVMKTARLVKDPSAA--NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV  399 (514)
Q Consensus       322 ~~g~~~~V~~LL~~gad~n~~--d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL  399 (514)
                      .......+..=+..++++|..  -..|.|+||.|+..|..-++++|+++|+++|..|..|+||||.+...|+...+.+|+
T Consensus       630 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll  709 (785)
T KOG0521|consen  630 DGECLPRIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLL  709 (785)
T ss_pred             CccchhhhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhc
Confidence            334455555555566666653  236889999999999999999999999999999999999999999999999999999


Q ss_pred             hcCcccccccCCCCchhhhhhhh
Q psy7683         400 EHGACIFATTHSDHETAAVKCEE  422 (514)
Q Consensus       400 ~~GAdin~~d~~g~t~l~~aa~a  422 (514)
                      ++||+.++.+..|..++..+..+
T Consensus       710 ~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  710 KRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             cccccccccCccCcchhhHHhhh
Confidence            99999999999999998887743

>KOG0521|consensus

Probab=98.04  E-value=5.6e-06  Score=94.29  Aligned_cols=88  Identities=33%  Similarity=0.353  Sum_probs=67.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      .|.++||.|+..|..-++++||+.|+++|.+|..|++|||.+...|+...+.+|+++|++.++.|.+|.++|++|....+
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhcc
Confidence            45777888888888888888888888888888888888888888888888888888888888888888888888876666


Q ss_pred             hHHHHHHH
Q psy7683         392 LAMVRFLV  399 (514)
Q Consensus       392 ~eivklLL  399 (514)
                      .+++-+|.
T Consensus       735 ~d~~~l~~  742 (785)
T KOG0521|consen  735 ADIVLLLR  742 (785)
T ss_pred             ccHHHHHh
Confidence            55555443

>KOG2199|consensus

Probab=98.02  E-value=2.7e-06  Score=87.38  Aligned_cols=54  Identities=43%  Similarity=0.746  Sum_probs=50.0

Q ss_pred             ccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       446 ~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                      .+.+.||||+.+....||.|++|++|.||+..+.+   ||-|++.+..|+||++||-
T Consensus       215 ~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~---WWKG~~~~~~GlFPsnfVT  268 (462)
T KOG2199|consen  215 VRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPN---WWKGENHRGIGLFPSNFVT  268 (462)
T ss_pred             chhhhhhhcccccCCCccceecCcEEEEcccCCcc---hhccccCCcccccchhhhh
Confidence            46789999999999999999999999999888777   9999999999999999963

>KOG0522|consensus

Probab=98.01  E-value=8e-06  Score=86.85  Aligned_cols=87  Identities=18%  Similarity=0.215  Sum_probs=71.4

Q ss_pred             cHHHHHHHcCChhHHHHHH--hhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhc
Q psy7683         348 TALHNAICAGHFDIVRFLV--QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEE  425 (514)
Q Consensus       348 TpLh~Aa~~g~~eiVklLL--~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~  425 (514)
                      -+||+++.....+-+..++  +.+..++.+|..|+||||+|+..|+.++++.|+.+||++..+++.|+++++.++   ..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv---~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAV---ST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHH---Hc
Confidence            4699999988776554433  456778999999999999999999999999999999999999999999999887   56


Q ss_pred             CchhhHHHHHhh
Q psy7683         426 GFEGCSEFLYSV  437 (514)
Q Consensus       426 g~~~~v~lLl~~  437 (514)
                      |+..++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            666555444433

>KOG3609|consensus

Probab=98.00  E-value=1.1e-05  Score=89.97  Aligned_cols=127  Identities=17%  Similarity=0.102  Sum_probs=103.5

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcC----CCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhh
Q psy7683         313 PLALLLDASLEGELELVMKTARLV----KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS  388 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~g----ad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~  388 (514)
                      +..-...||..|+...|+.+++..    .++|.+|.-|+++||.|..+.+.+++++|++++..+  .     -+|.+|+.
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--g-----dALL~aI~   97 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--G-----DALLLAIA   97 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--c-----hHHHHHHH
Confidence            344566799999999999998873    357889999999999999999999999999987665  2     48999999


Q ss_pred             cCchHHHHHHHhcCccc----------ccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccch
Q psy7683         389 CNNLAMVRFLVEHGACI----------FATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAV  449 (514)
Q Consensus       389 ~g~~eivklLL~~GAdi----------n~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~  449 (514)
                      .|..++|++|+.+-...          ...-..+-||+.+||   ..++.+|+++|++.|+.+-....-++
T Consensus        98 ~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAA---h~NnyEil~~Ll~kg~~i~~PH~~~C  165 (822)
T KOG3609|consen   98 VGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAA---HLNNFEILQCLLTRGHCIPIPHDIRC  165 (822)
T ss_pred             HHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHH---HhcchHHHHHHHHcCCCCCCCccccc
Confidence            99999999999875443          122334677777776   88999999999999999876655443

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=97.98  E-value=2.7e-06  Score=62.90  Aligned_cols=45  Identities=53%  Similarity=1.029  Sum_probs=39.8

Q ss_pred             hhhhhhcccccccccccCceEEEeecCCcccccceeeccC--CCCCCchh
Q psy7683         451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPR  498 (514)
Q Consensus       451 aL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~  498 (514)
                      |+|+|.+....+|.|+.|+.+.|+.+.+++   ||+++..  +++|+||.
T Consensus         2 Alydf~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    2 ALYDFDAEDPDELSFKKGDIIEVLEKSDDG---WWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             ESSCBETSSTTBSEB-TTEEEEEEEESSSS---EEEEEETTTTEEEEEEG
T ss_pred             CCeeeCCCCCCEEeEECCCEEEEEEecCCC---EEEEEECCCCcEEEeeC
Confidence            789999999999999999999999988765   9999975  58999994

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2070|consensus

Probab=97.92  E-value=5e-06  Score=87.32  Aligned_cols=60  Identities=33%  Similarity=0.662  Sum_probs=52.4

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA  511 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~~  511 (514)
                      +.|-|.+.+.+.++|.|.+||++.|....   ||+||+|.++|+.||||.+||.++....|..
T Consensus        20 vrAkf~F~gsNnDELsf~KgDvItVTq~e---eGGWWEGTlng~TGWFPsnYV~eik~e~pLs   79 (661)
T KOG2070|consen   20 VRAKFNFQGSNNDELSFSKGDVITVTQVE---EGGWWEGTLNGRTGWFPSNYVREIKSEKPLS   79 (661)
T ss_pred             EEEEeecccCCCceeccccCCEEEEEEec---cCcceeccccCccCccchHHHHHHhhcCCCC
Confidence            35568899999999999999999999875   5669999999999999999999988666654

>KOG1029|consensus

Probab=97.89  E-value=4.4e-06  Score=91.57  Aligned_cols=55  Identities=49%  Similarity=0.828  Sum_probs=49.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .+.++|||.+.+.++|.|++|+++.|+.+++.   +||.|.++|+.|+||.+||..+.
T Consensus      1055 qviamYdY~AqndDELsF~kgdiI~Vlnkdep---eWW~Ge~ng~sGLFPSNYV~k~t 1109 (1118)
T KOG1029|consen 1055 QVIAMYDYEAQNDDELSFKKGDIINVLNKDEP---EWWSGERNGKSGLFPSNYVQKQT 1109 (1118)
T ss_pred             eeEEeeccccCCcccccccCCCEEEecCCCCh---hhhcccccCccccCccccccccc
Confidence            45689999999999999999999999988755   49999999999999999996543

>KOG4348|consensus

Probab=97.75  E-value=1.4e-05  Score=82.82  Aligned_cols=56  Identities=34%  Similarity=0.701  Sum_probs=51.3

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      +..+|.|.+++.++|.|+.|++++++.+ ++++.+||+|.++|++|.||-+|+..++
T Consensus       264 crv~F~Ye~qndDELt~KEgdil~lItK-~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  264 CRVKFVYEPQNDDELTLKEGDILILITK-NCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             eeeeeeecCCCccceeeccccEEEEecc-cccccceeeeeecCccccCCchhhhhcC
Confidence            4567899999999999999999998874 7899999999999999999999999876

>smart00326 SH3 Src homology 3 domains

Probab=97.71  E-value=2e-05  Score=59.07  Aligned_cols=52  Identities=52%  Similarity=0.901  Sum_probs=45.4

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-CCCCCchhhhhhc
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-g~~G~~P~~~l~~  503 (514)
                      ..++++|.+....+|.|+.|+++.++.+.+   .+||.++.. ++.|+||..|+..
T Consensus         5 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~---~~w~~~~~~~~~~G~vP~~~v~~   57 (58)
T smart00326        5 VRALYDYTAQDPDELSFKKGDIITVLEKSD---DGWWKGRLGRGKEGLFPSNYVEE   57 (58)
T ss_pred             EEEeeeeCCCCCCCCCCCCCCEEEEEEcCC---CCeEEEEeCCCCEEEEchHHEEE
Confidence            457889999999999999999999998864   459999987 9999999999865

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG4225|consensus

Probab=97.65  E-value=3.2e-05  Score=80.52  Aligned_cols=55  Identities=31%  Similarity=0.660  Sum_probs=52.6

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      -.++|++.++...||.|++|+++-|+.+.|++   |++|.++|+.|+||.+||+.++.
T Consensus       233 aralf~F~~qt~kEL~~~kGDIVyI~rkvD~n---WyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  233 ARALFDFEAQTPKELPFNKGDIVYILRKVDQN---WYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             hhheeccccCCccccccCCCCEEEEEeeccCc---eeeeeecceecceechheeecCc
Confidence            57899999999999999999999999999888   99999999999999999999987

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=97.65  E-value=2.3e-05  Score=58.03  Aligned_cols=50  Identities=50%  Similarity=0.906  Sum_probs=43.5

Q ss_pred             hhhhhhhcccccccccccCceEEEeecCCcccccceeeccCC-CCCCchhhhhh
Q psy7683         450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLG  502 (514)
Q Consensus       450 taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g-~~G~~P~~~l~  502 (514)
                      .++++|.+....+|.|..|+++.++...+.   +||+++..+ +.|+||..|++
T Consensus         3 ~a~~~~~~~~~~~l~~~~Gd~v~v~~~~~~---~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           3 RALYDYDARDPDELSFKKGDIIEVLEKSDD---GWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEeeCCCCCCCCCCCCCCEEEEEEcCCC---CeEEEEECCCCEEEEccccCc
Confidence            468899999999999999999999988544   499999766 99999998875

>KOG2856|consensus

Probab=97.58  E-value=1.8e-05  Score=80.65  Aligned_cols=56  Identities=38%  Similarity=0.633  Sum_probs=50.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-CCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-g~~G~~P~~~l~~~~  505 (514)
                      .+.+||||.+...++|+|+.|+.+..|.+.|  +.+|+-||+. |+.|++|.+||++.+
T Consensus       416 ~vraLYDY~gqE~DElsfkaGd~l~kl~eeD--eqGWC~Grl~~G~vGLyPAnYVe~~g  472 (472)
T KOG2856|consen  416 RVRALYDYAGQEGDELSFKAGDELEKLEEED--EQGWCKGRLDSGRVGLYPANYVECIG  472 (472)
T ss_pred             eEEeeeccCcccccchhhccccHhhhcCCcc--ccccccccccCCcccccchhhhhccC
Confidence            4678999999999999999999999997654  6789999998 999999999999864

>KOG0162|consensus

Probab=97.54  E-value=3.9e-05  Score=84.03  Aligned_cols=55  Identities=45%  Similarity=0.852  Sum_probs=50.3

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ..+.|+|+|.+++.+||.|++|+++.|+.++..+   ||.|+.+|++|+||-+|+.++
T Consensus      1052 p~~~A~Y~y~gq~~dEls~~~~diIei~~edpSG---Ww~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1052 PVCEALYDYPGQDVDELSFKKGDIIEIMREDPSG---WWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             cceeeeccCCCCCcccccccCCCEEEEeccCCCc---chhhccCCccccccccccccC
Confidence            4578899999999999999999999999988776   999999999999999998764

>KOG2384|consensus

Probab=97.41  E-value=0.00037  Score=65.69  Aligned_cols=72  Identities=15%  Similarity=0.020  Sum_probs=63.0

Q ss_pred             CccCCCCchhHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCC
Q psy7683         306 KRCVSFDPLALLLDASLEGELELVMKTARLV-KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDS  377 (514)
Q Consensus       306 ~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~g-ad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~  377 (514)
                      .+..|..|||+|+.|+..|..+.+.+|+.+| +.+...|..|.+++.+|-..|+.++|+.|.+.-.+-...+.
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            3445678999999999999999999999999 89999999999999999999999999999987555444443

>KOG1118|consensus

Probab=97.41  E-value=5e-05  Score=75.90  Aligned_cols=58  Identities=33%  Similarity=0.632  Sum_probs=51.8

Q ss_pred             ccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      .+.--+.++|++...+..+|.|+.|+++.+...=|++   ||+|+..|+.|+||.+|+.-+
T Consensus       304 ~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIden---WyeG~~~g~sG~FPvnYv~vl  361 (366)
T KOG1118|consen  304 MDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDEN---WYEGEKHGESGMFPVNYVEVL  361 (366)
T ss_pred             ccchhheeeeccCCCCCCccCcccCceeeehhhcCcc---hhhheecCccCccccceeEEe
Confidence            3445578999999999999999999999999888887   999999999999999998643

>KOG2996|consensus

Probab=97.38  E-value=8.8e-05  Score=79.52  Aligned_cols=55  Identities=27%  Similarity=0.587  Sum_probs=47.9

Q ss_pred             hhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       450 taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .+-|++++.+..+|+|+.|++++++.+-+ ++++||.|..+||.||||..||++..
T Consensus       809 varYdf~ard~~eLSlk~GDvV~i~~k~g-~d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  809 VARYDFCARDMRELSLKEGDVVKIYDKVG-EDQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             eeccccCCCchhhcccccCCEEEEehhcc-ccCceecceecCcccccccccccccC
Confidence            34588899999999999999999997744 35789999999999999999998764

>KOG0520|consensus

Probab=97.34  E-value=0.00012  Score=83.68  Aligned_cols=95  Identities=18%  Similarity=0.164  Sum_probs=73.8

Q ss_pred             CccCCCCchhHHHHHHHcCCHHHHHHH-HHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcc------cCCC
Q psy7683         306 KRCVSFDPLALLLDASLEGELELVMKT-ARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA------QDSD  378 (514)
Q Consensus       306 ~~~~~~~g~t~Lh~Aa~~g~~~~V~~L-L~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~------~D~~  378 (514)
                      ....+.+|+..+|+++ .++++...+| +-.|..++.+|..||||||||+.+|+..++..|++.|++.+.      ..-.
T Consensus       601 ~~eld~d~qgV~hfca-~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~  679 (975)
T KOG0520|consen  601 DLELDRDGQGVIHFCA-ALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPG  679 (975)
T ss_pred             chhhcccCCChhhHhh-hcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCC
Confidence            3445677888899855 4555554444 455888999999999999999999999999999988876543      3346


Q ss_pred             CCchhhhHhhcCchHHHHHHHhc
Q psy7683         379 GWMPLHCAASCNNLAMVRFLVEH  401 (514)
Q Consensus       379 G~TPLh~Aa~~g~~eivklLL~~  401 (514)
                      |.|+-.+|...|+..+.-+|-+.
T Consensus       680 g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  680 GKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CCchhhhhhcccccchHHHHhhh
Confidence            88999999999998877777653

>KOG4226|consensus

Probab=97.18  E-value=0.00011  Score=72.35  Aligned_cols=57  Identities=37%  Similarity=0.757  Sum_probs=50.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~  506 (514)
                      +.+||.+...+.+||.|++|+++.|+++- +++.+||.+| .+|+.|++|++|+..+..
T Consensus       194 VvaLYsFsssndeELsFeKGerleivd~P-e~DPdWwkarn~~G~vGLVPrNYv~vl~d  251 (379)
T KOG4226|consen  194 VVALYSFSSSNDEELSFEKGERLEIVDKP-ENDPDWWKARNARGQVGLVPRNYVVVLSD  251 (379)
T ss_pred             EEEEecccCCChhhcccccCceeEeccCC-CCCchHHhhcccCCccceeecceEEEecc
Confidence            57899999999999999999999999774 5678899998 689999999999887754

>KOG4792|consensus

Probab=97.15  E-value=0.00016  Score=69.50  Aligned_cols=57  Identities=32%  Similarity=0.701  Sum_probs=49.7

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~  508 (514)
                      +.++|++.+...++|-|++|+++.|+.+.++.   ||.+| -.|+.|.+|..||+++-+-.
T Consensus       127 vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeq---WW~Arns~Gk~GmIPvpYVe~~~~~~  184 (293)
T KOG4792|consen  127 VRALFDFNGNDEEDLPFKKGEILRIRDKPEEQ---WWNARNSEGKRGMIPVPYVEKYRPAS  184 (293)
T ss_pred             eeeeeccCCCccccCCcccCcEEEEecCcHHH---hhhhhccCCcccceechHHHhhhhhh
Confidence            35599999999999999999999999887655   99998 57999999999999876543

>KOG3875|consensus

Probab=97.13  E-value=0.00035  Score=70.04  Aligned_cols=59  Identities=31%  Similarity=0.493  Sum_probs=51.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCccccc--ceeecc--CCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWWSKL--NNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~--ww~~r~--~g~~G~~P~~~l~~~~~  506 (514)
                      -..|+||+.+.++.|++|++||.+.|+.|.+....+  ||..+-  .+..|+||.+|+..++|
T Consensus       270 ~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  270 FARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            357899999999999999999999999998865555  998774  46799999999999998

>KOG1029|consensus

Probab=97.12  E-value=0.00034  Score=77.20  Aligned_cols=59  Identities=29%  Similarity=0.664  Sum_probs=51.4

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA  511 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~~  511 (514)
                      +.|+|.|.+....+|.|.+|+++.||.+.+    .||.|...|+.||||..||-+++-+.-.+
T Consensus       816 ~iA~y~wrakke~dLsFskgd~I~Vlekqe----mwW~G~v~g~~GwFPksYVk~~~~~t~st  874 (1118)
T KOG1029|consen  816 AIALYPWRAKKENDLSFSKGDTITVLEKQE----MWWFGEVAGEIGWFPKSYVKEVGAITGST  874 (1118)
T ss_pred             HHhhccccccccccccccCCCeeeeehhcc----ceecccccCccCcCcHHhhhhcccccccc
Confidence            456889999999999999999999998844    49999999999999999999887665443

>KOG4226|consensus

Probab=96.88  E-value=0.00052  Score=67.66  Aligned_cols=51  Identities=29%  Similarity=0.655  Sum_probs=47.0

Q ss_pred             hhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       453 ~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      |.|.++-.+||.+.+|..+.|+++..++   ||.|.-+|+.||||.+|+.+...
T Consensus       114 f~Y~a~~eDELsLtKGtrv~vmEKssDG---WWrG~~ng~VGWFPSNYv~E~~d  164 (379)
T KOG4226|consen  114 FNYVAEREDELSLTKGTRVTVMEKSSDG---WWRGSYNGQVGWFPSNYVTEEVD  164 (379)
T ss_pred             EeeccccccccccccCcEEEEEEeccCc---ceecccCCeeccccccceehhcc
Confidence            6788999999999999999999999887   99999999999999999887654

>KOG4348|consensus

Probab=96.80  E-value=0.0002  Score=74.45  Aligned_cols=58  Identities=33%  Similarity=0.646  Sum_probs=50.9

Q ss_pred             ccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       446 ~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ...+.++|.|..++.++|.|+.|+++.+..+-+++   ||.|.++|..|+||.+||-+++.
T Consensus       100 ~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEeG---Ww~G~Lngk~GmFPsNFVkel~~  157 (627)
T KOG4348|consen  100 ARICVVTFAYSPQNDDELELKVGDIIELISEVEEG---WWKGKLNGKVGMFPSNFVKELPT  157 (627)
T ss_pred             ceeEEEEEeecCCCCceeeeeeccHHHhhhHhhhh---hhhceecCcccccchhhceecCC
Confidence            34567789999999999999999999999776555   99999999999999999988764

>smart00248 ANK ankyrin repeats

Probab=96.61  E-value=0.0032  Score=38.77  Aligned_cols=27  Identities=37%  Similarity=0.671  Sum_probs=14.1

Q ss_pred             CCcHHHHHHHcCChhHHHHHHhhCCCC
Q psy7683         346 GITALHNAICAGHFDIVRFLVQFGCDV  372 (514)
Q Consensus       346 G~TpLh~Aa~~g~~eiVklLL~~Gadv  372 (514)
                      |.|+||+|+..++.+++++|+++|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            445555555555555555555554443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.58  E-value=0.004  Score=66.32  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=57.7

Q ss_pred             HHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHH
Q psy7683         326 LELVMKTARLVKDPSA------ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV  399 (514)
Q Consensus       326 ~~~V~~LL~~gad~n~------~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL  399 (514)
                      .+.|++|.+++.+.|.      .+..--|+||||+..|..++|.+||+.|+|+..+|..|+||..++.   +.++-..++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA---NKDVKSIFI  480 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc---cHHHHHHHH
Confidence            5778888888876653      3445679999999999999999999999999999999999999887   344444444

>smart00248 ANK ankyrin repeats

Probab=96.47  E-value=0.003  Score=38.87  Aligned_cols=29  Identities=48%  Similarity=0.714  Sum_probs=26.1

Q ss_pred             CCCchhhhHhhcCchHHHHHHHhcCcccc
Q psy7683         378 DGWMPLHCAASCNNLAMVRFLVEHGACIF  406 (514)
Q Consensus       378 ~G~TPLh~Aa~~g~~eivklLL~~GAdin  406 (514)
                      .|.|+||+|+..++.+++++|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG1264|consensus

Probab=95.89  E-value=0.0052  Score=68.65  Aligned_cols=57  Identities=35%  Similarity=0.644  Sum_probs=49.8

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCC-CCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~-~G~~P~~~l~~~~~  506 (514)
                      -.+.|||+|.+...+||+|-++.++.++.+.   +++||.|+-.|+ .||||.+||+++-.
T Consensus       775 vt~kAL~~Yka~r~DELSFpk~aiItnv~ke---eg~wWrGdYGg~iq~wfPsnyVeei~~  832 (1267)
T KOG1264|consen  775 VTVKALYDYKAKRSDELSFPKGAIITNVSKE---EGGWWRGDYGGRIQQWFPSNYVEEIST  832 (1267)
T ss_pred             hhhhhhhccccCCcccccccccceeEeeecc---CCceeecccccceeeeccHHHhhhhcc
Confidence            4578999999999999999999999999886   456999998776 78999999988754

>KOG1843|consensus

Probab=95.77  E-value=0.0038  Score=64.93  Aligned_cols=77  Identities=30%  Similarity=0.622  Sum_probs=57.8

Q ss_pred             CchhhHHHHHhhhhhccccc-ccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         426 GFEGCSEFLYSVQEKLGILN-NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       426 g~~~~v~lLl~~GAd~~i~d-~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      ++..|-.+=...|+-+...- .+-.+++|++.++..-++.|.+|+++.++.+.+. ...||.++.++++|+||.+|+..
T Consensus       395 ~~~~~~~~s~skgaf~~~Sl~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s-~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  395 GYSKCGTYSASKGAFVGCSLEPNIATALYSFAGEQPGDLSFQKGDIITILKKSDS-ANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             cccccccccCCCCcccccccCcceeeeeehhccCCCCCcccccCceEEEecCCcc-hhhHHHhhccccccccccceecc
Confidence            33333333334444443322 2357899999999999999999999999988764 46799999999999999998753

>KOG2546|consensus

Probab=95.64  E-value=0.0063  Score=63.66  Aligned_cols=56  Identities=36%  Similarity=0.651  Sum_probs=51.3

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.++|+|.+...++|.|..|.++-|+.+.|++   ||+|-+.|..|+||-+|++.+..
T Consensus       425 kVv~iydy~~~KddeLsf~E~ailyv~kknddg---w~EgV~~~VTglFpgnyve~~~~  480 (483)
T KOG2546|consen  425 KVVAIYDYTADKDDELSFAEGAILYVLKKNDDG---WYEGVQDGVTGLFPGNYVEPLKA  480 (483)
T ss_pred             HHHhhcccccccccccccccccEEEEEEecCCc---chhheecCcceeccCcccccccc
Confidence            478899999999999999999999999998887   99999999999999999987643

>KOG2505|consensus

Probab=95.55  E-value=0.02  Score=61.15  Aligned_cols=62  Identities=18%  Similarity=0.080  Sum_probs=53.2

Q ss_pred             hhHHHHHHhhCCCCccc------CCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhh
Q psy7683         359 FDIVRFLVQFGCDVNAQ------DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       359 ~eiVklLL~~Gadvn~~------D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      ...|++|.+++++.|..      +.--.|+||+|+..|..+||.+||+.|+|+...|..|.||+.+..
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            56788999988877542      334569999999999999999999999999999999999998665

>KOG4225|consensus

Probab=95.53  E-value=0.0071  Score=63.50  Aligned_cols=52  Identities=35%  Similarity=0.615  Sum_probs=48.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceee--ccCCCCCCchhhhhhc
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS--KLNNKEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~--r~~g~~G~~P~~~l~~  503 (514)
                      +.|||.|..++.++|-|..||++.|+++=|++   |+.|  ++-|.-|.||-+||+-
T Consensus       435 yrAly~Y~pqnedeLEl~egDii~VmeKcddg---WfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  435 YRALYSYRPQNEDELELREGDIIDVMEKCDDG---WFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             ceeccccCCCCchhheeccCCEEeeeecccCc---ceeccceecccccccCcccccc
Confidence            68999999999999999999999999999888   9999  8889999999999863

>KOG3601|consensus

Probab=95.22  E-value=0.0094  Score=57.19  Aligned_cols=55  Identities=25%  Similarity=0.550  Sum_probs=49.0

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .-++|+.....+.++.|..|+.+.++..++..   ||.|+.-|+.|+||..++.-+-+
T Consensus       166 qQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~---ww~Gs~lg~agiFpagyv~p~d~  220 (222)
T KOG3601|consen  166 QQALYDFQPQPPGQLAFRRGQQIQVLDSSSPF---WWFGSKLGRAGIFPAGYVAPSDL  220 (222)
T ss_pred             hhhcCCCCCCCchhhccccCCcceeecCCCcc---hhhccccCceeeecCcccccccc
Confidence            45688999999999999999999999998877   99999999999999998865543

>KOG1702|consensus

Probab=94.60  E-value=0.029  Score=53.50  Aligned_cols=55  Identities=29%  Similarity=0.628  Sum_probs=48.7

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      ..+.+.|+|.+.+.+++.|..|+.+.....-+++   |++|.+  .|..|..|.+|++.+
T Consensus       208 ktyra~ydysaqdedevsF~dgd~ivnvq~iddG---Wmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  208 KTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDG---WMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             ccchhhccCcccCcceeEEecCCeEEEEEeccCC---ceeeEEEeccccCCCchhheeeC
Confidence            5578999999999999999999999988887776   999985  689999999998753

>KOG2222|consensus

Probab=94.50  E-value=0.07  Score=56.70  Aligned_cols=56  Identities=29%  Similarity=0.593  Sum_probs=50.3

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .+..||+|+...+.+++.|++.+++.++...|+.   -|.|.++|-+||||.-||+.+-
T Consensus       549 krakal~df~r~dddelgfrkndiitiisekdeh---cwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  549 KRAKALHDFAREDDDELGFRKNDIITIISEKDEH---CWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             HHHHHHhhhhhccccccccccccEEEEeecCCcc---eeeeccccccccchHHHHHHHH
Confidence            4457899999999999999999999999988877   8999999999999999988654

>KOG3557|consensus

Probab=94.41  E-value=0.016  Score=63.49  Aligned_cols=57  Identities=40%  Similarity=0.747  Sum_probs=48.8

Q ss_pred             hhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCCC
Q psy7683         450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       450 taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      ..+|++.+++..+|.+.+|+++.|+..    ++.||.+| ..|+.||+|.+.++.++-.+.-
T Consensus       504 ~~~Ydf~arNs~ELsV~k~E~LEvl~d----~R~WW~~kn~~G~~GyvP~nIL~~~~~~~~~  561 (721)
T KOG3557|consen  504 LVLYDFQARNSSELSVKKGEVLEVLDD----GRKWWKVKNGHGRAGYVPSNILAPLQPEHTG  561 (721)
T ss_pred             eeehhhhcccchhhhhhhhhhhhhhhc----cccceeccCccCCCCCcchhhhccCCCcccc
Confidence            456899999999999999999999965    56699888 5789999999999988776653

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.30  E-value=0.087  Score=51.37  Aligned_cols=94  Identities=15%  Similarity=0.239  Sum_probs=59.3

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC----CCCCcHHHHHHHc--CChhHHHHHHhhC-CCCcc---cCCCCC
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVKDPSAAN----DEGITALHNAICA--GHFDIVRFLVQFG-CDVNA---QDSDGW  380 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d----~~G~TpLh~Aa~~--g~~eiVklLL~~G-advn~---~D~~G~  380 (514)
                      ....++|.++...+..+++.+||..- +....|    ..+.--+-|+...  .+..+++++|.+| +++|.   +-..|.
T Consensus       177 kdA~~Am~~si~~~K~dva~~lls~f-~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGd  255 (284)
T PF06128_consen  177 KDAHQAMWLSIGNAKEDVALYLLSKF-NFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGD  255 (284)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhhc-ceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcc
Confidence            34567777788777788888887651 222222    1122234444332  3456777777776 45654   345678


Q ss_pred             chhhhHhhcCchHHHHHHHhcCccc
Q psy7683         381 MPLHCAASCNNLAMVRFLVEHGACI  405 (514)
Q Consensus       381 TPLh~Aa~~g~~eivklLL~~GAdi  405 (514)
                      |-|.-|...++.+++.+||++||-.
T Consensus       256 tMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  256 TMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             hHHHhHHhcCcHHHHHHHHHcCccc
Confidence            8888888888888888888888743

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG3655|consensus

Probab=93.73  E-value=0.032  Score=59.35  Aligned_cols=55  Identities=33%  Similarity=0.662  Sum_probs=48.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeecc-CCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~-~g~~G~~P~~~l~~~  504 (514)
                      ..-.|+|+|.+-+..++.|--++.+.++..-|++   ||.|.. .|+.|+||.+||+++
T Consensus       428 q~A~A~~dyqAAddtEisf~p~d~it~Id~vdeg---ww~g~~pdG~~glfPaNyV~li  483 (484)
T KOG3655|consen  428 QTARALYDYQAADDTEISFDPPDAITLIDQVDEG---WWTGQGPDGEVGLFPANYVELI  483 (484)
T ss_pred             CCccccccccccCCcccccCCccccccccccCCc---cccccCCCCCcCcccccccccC
Confidence            3457899999999999999999999999888776   999987 689999999999875

>KOG3523|consensus

Probab=93.27  E-value=0.03  Score=61.10  Aligned_cols=55  Identities=22%  Similarity=0.472  Sum_probs=48.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~  506 (514)
                      +-+...|.+..++++.++.++++.|+.+..+|   |.+|.+  +|..||||.+|++++..
T Consensus       611 v~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DG---Wl~GeRl~Dge~GWFP~~~veeI~~  667 (695)
T KOG3523|consen  611 VQCVHSYKAKQPDELTLELADVVNVLQKTPDG---WLEGERLRDGERGWFPSSYVEEITN  667 (695)
T ss_pred             hheeeccccCCCceeeeehhhhhhhhhcCCCc---cccccccccCccCcchHHHHHHhcC
Confidence            44556888999999999999999999999888   999864  78899999999988764

>KOG3632|consensus

Probab=92.75  E-value=0.06  Score=61.63  Aligned_cols=57  Identities=30%  Similarity=0.631  Sum_probs=45.8

Q ss_pred             chhhhhhhhc--------ccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEA--------NNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~--------~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      -+.|||||..        ....||.|+.|++++|+-.  ..+.+++.|.++|+.|++|.++|++++.
T Consensus      1140 ifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GD--kDadgFY~GE~ngr~GlIPcNmvae~~v 1204 (1335)
T KOG3632|consen 1140 IFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGD--KDADGFYMGELNGRRGLIPCNMVAEQPV 1204 (1335)
T ss_pred             eeEeeeccCccccCCCCChhhhccccccCcEEEEecc--ccccceeecccccccccccccccccccC
Confidence            3567777763        2456999999999999944  3355699999999999999999998764

>KOG4773|consensus

Probab=92.73  E-value=0.035  Score=56.93  Aligned_cols=53  Identities=23%  Similarity=0.508  Sum_probs=47.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ..+++++.+....+|.|..|+++-++.+.+..   ||+|+.+|..||+|..|+.-+
T Consensus       178 ~~a~~df~gns~~EL~l~agdV~~~~~r~ek~---W~~gk~R~~~g~yp~sF~~~l  230 (386)
T KOG4773|consen  178 AEASFDFPGNSKLELNLVAGDVEFLLSRDEKY---WLLGKVRGLTGYYPDSFVKQL  230 (386)
T ss_pred             HHhhccCCCCccceeeeehhhHHHHHhhcccc---eeeeeeccccccccHHhhhhh
Confidence            56788999999999999999999999987665   999999999999999988766

>KOG4575|consensus

Probab=92.43  E-value=0.065  Score=58.68  Aligned_cols=55  Identities=27%  Similarity=0.559  Sum_probs=44.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cC--CCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LN--NKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~--g~~G~~P~~~l~~~~~  506 (514)
                      .+.|+|.|.+....++.|..||.+.+++-+|    +|||+. .+  +..||||.+|++++..
T Consensus        10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~d----gkwwi~lhrNk~~~g~fpsNFvhcLd~   67 (874)
T KOG4575|consen   10 MVRALYAWPGEREGDLKFTEGDLIEQTRIED----GKWWILLHRNKDEDGLFPSNFVHCLDK   67 (874)
T ss_pred             eEEeeccCCCCcccccceecccceeEEeecc----ceeeeeeeecccccccCcccceeeccc
Confidence            3678999999999999999999999998754    366554 33  5689999999977653

>KOG3771|consensus

Probab=91.83  E-value=0.073  Score=56.78  Aligned_cols=52  Identities=37%  Similarity=0.387  Sum_probs=43.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhh
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL  501 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l  501 (514)
                      .++++|+|.+.+.++|.|..|++|.|....  ...+||.|++.|..|-++..|+
T Consensus       402 ~v~a~~dy~a~~~deLsf~~gd~i~vi~s~--~~~e~~eg~~mg~ke~~~~~~~  453 (460)
T KOG3771|consen  402 KVKALHDYAAQDTDELSFEAGDVILVIPSD--NPEEQDEGWLMGVKESDWNGLF  453 (460)
T ss_pred             ceeccccccccccccccccCCCEEEEecCC--CccchhhHHHhhhcccccccce
Confidence            378899999999999999999999999843  3567999999988776665554

>KOG4278|consensus

Probab=91.81  E-value=0.091  Score=58.07  Aligned_cols=59  Identities=32%  Similarity=0.556  Sum_probs=48.6

Q ss_pred             cccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         445 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       445 d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      |-+-+.||||+.+.....|.+.+|+.++||  +...-++|+++|-.+-.||+|.+|+.-|-
T Consensus        89 dpNLFVALYDFvasGdntLSitKGeklRvL--GYN~NgEWcEartKNGqGWVPSNyItPvN  147 (1157)
T KOG4278|consen   89 DPNLFVALYDFVASGDNTLSITKGEKLRVL--GYNKNGEWCEARTKNGQGWVPSNYITPVN  147 (1157)
T ss_pred             CCceeEeeeeeeccccceeeeecCceEEEe--eecCCCcceeecccCCCcccccccccccc
Confidence            344678999999999999999999999999  44556789999975445999999976553

>KOG4429|consensus

Probab=90.67  E-value=0.21  Score=50.18  Aligned_cols=53  Identities=21%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      +.++|.+.+...++|...+|++.++-++...+   ||+||+.|..|-||..++++.
T Consensus       366 cdafYSfqarqddel~~e~gditif~Ekkeeg---~~f~rl~gd~~hf~Aa~iEea  418 (421)
T KOG4429|consen  366 CDAFYSFQARQDDELGGEIGDITIFDEKKEEG---PTFCRLLGDFEHFHAAEIEEA  418 (421)
T ss_pred             hhhhhccccccccccCCcccceeeecCcccCC---CceeeeccccCCCcHHHHHHh
Confidence            46688999999999999999999998776655   999999999999999998864

>KOG0197|consensus

Probab=88.27  E-value=0.22  Score=53.78  Aligned_cols=55  Identities=35%  Similarity=0.805  Sum_probs=46.0

Q ss_pred             cchhhhhhhhcccccccccccCce-EEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGEC-IIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~-i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      .-+.++|++.+....+|.|.+|++ ..++...   +..||++|.  -++.||+|.+++++.
T Consensus        12 ~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~---~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   12 TIVVALYDYASRTPEDLSFRKGDVVLILLETT---NGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             ceEEEeccccCCCccccccccCceEEEeeccC---ChhHHHHHHhhcCCCCcCcCceeecc
Confidence            346789999999999999999999 6776554   456999885  589999999999876

>KOG3725|consensus

Probab=85.62  E-value=0.42  Score=47.28  Aligned_cols=55  Identities=35%  Similarity=0.529  Sum_probs=48.0

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ...||||.+....++++...++++|+.--+ -+..|.+|...+++|-+|..|++.+
T Consensus       320 ArVlyDYdAa~s~ElslladeiitVyslpG-MD~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  320 ARVLYDYDAALSQELSLLADEIITVYSLPG-MDADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             eeeeecccccchhhhhhhhcceEEEEecCC-CChHHhhhhhcCCCCCcchhHHHhc
Confidence            456899999999999999999999987644 3567999999999999999999875

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=84.35  E-value=3.1  Score=39.57  Aligned_cols=111  Identities=12%  Similarity=0.005  Sum_probs=65.2

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH----HHHHhhCCCCcccCCC--CCchhhh
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV----RFLVQFGCDVNAQDSD--GWMPLHC  385 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV----klLL~~Gadvn~~D~~--G~TPLh~  385 (514)
                      ..+.++-.||...+.++|+|+-+.   +...  +-.+-+-.|.....+++.    .+++++...-...|..  -.--|.+
T Consensus        75 ~~q~LFElAC~~qkydiV~WI~qn---L~i~--~~~~iFdIA~~~kDlsLyslGY~l~~~~~~~~~~~d~~~ll~~hl~~  149 (192)
T PF03158_consen   75 LNQELFELACEEQKYDIVKWIGQN---LHIY--NPEDIFDIAFAKKDLSLYSLGYKLLFNRMMSEHNEDPTSLLTQHLEK  149 (192)
T ss_pred             HHHHHHHHHHHHccccHHHHHhhc---cCCC--CchhhhhhhhhccchhHHHHHHHHHHhhcccccccCHHHHHHHHHHH
Confidence            456778889999999999998443   2211  122345566666665542    2233332211111100  0123667


Q ss_pred             HhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         386 AASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       386 Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      |+..|-+..+.-.|++|.+++.      +.+..|+   ..++..++.+++.
T Consensus       150 a~~kgll~F~letlkygg~~~~------~vls~Av---~ynhRkIL~yfi~  191 (192)
T PF03158_consen  150 AAAKGLLPFVLETLKYGGNVDI------IVLSQAV---KYNHRKILDYFIR  191 (192)
T ss_pred             HHHCCCHHHHHHHHHcCCcccH------HHHHHHH---HhhHHHHHHHhhc
Confidence            8888888888888888888764      3344433   6777777777754

These proteins may be involved in promoting survival of infected macrophages [].

>KOG4792|consensus

Probab=82.23  E-value=1  Score=43.87  Aligned_cols=49  Identities=22%  Similarity=0.384  Sum_probs=40.0

Q ss_pred             cccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         459 NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       459 ~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      +...|.++.|++++|..+--.+   -|+|.++|+.|.||..+|..+-.-.|+
T Consensus       242 DkTaL~levGdiVkVTk~ninG---qwegElnGk~G~fPfThvrf~d~~~~d  290 (293)
T KOG4792|consen  242 DKTALALEVGDIVKVTKKNING---QWEGELNGKIGHFPFTHVRFTDVQNPD  290 (293)
T ss_pred             ChhhhhhhcCcEEEEEeeccCc---eeeeeecCccccccceeEEeeccCCcC
Confidence            4566899999999999876554   899999999999999888776554443

>KOG2528|consensus

Probab=82.09  E-value=0.96  Score=48.13  Aligned_cols=63  Identities=19%  Similarity=0.342  Sum_probs=52.7

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQPSATP  513 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~~~~~  513 (514)
                      ..++|++...+..++.+..++++.+.....  ..+||.++ ..|..|.||.+|++.+...++.+++
T Consensus         5 ~RamyDf~~E~~sElsi~~~evl~i~~e~~--~~GwLeg~Nsrge~GlfPa~yVeV~~~a~~sSs~   68 (490)
T KOG2528|consen    5 ARAMYDFQSEGHSELSIWEGEVLSITSEDV--IEGWLEGSNSRGERGLFPASYVEVTRLAVASSSL   68 (490)
T ss_pred             hhhhcchhhcccccccccccceeeecCccc--ccccccCCCccCccCCCcccceeeeccccchhcc
Confidence            357889998899999999999999987654  45699988 5899999999999998877776653

>KOG1451|consensus

Probab=81.86  E-value=1  Score=49.40  Aligned_cols=55  Identities=33%  Similarity=0.541  Sum_probs=45.8

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      .....+|.+.+....++.|..|.++.-....  ++.+|..|+++|..|++|.+||+-
T Consensus       757 rk~k~lyAc~a~h~selsf~~gt~f~nv~~S--~e~Gwl~GtLnGktglip~nyve~  811 (812)
T KOG1451|consen  757 RRVKTLYACTADHHSELSFEPGTIFTNVYES--NEDGWLVGTLNGKTGLIPSNYVEP  811 (812)
T ss_pred             ccccceeccCCCCcccccccCcceeeeeccc--CCCCceeeecCCCcccCcccccCc
Confidence            3456678888999999999999998876533  456799999999999999999874

>KOG3601|consensus

Probab=81.54  E-value=0.59  Score=45.13  Aligned_cols=51  Identities=33%  Similarity=0.649  Sum_probs=42.7

Q ss_pred             hhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       450 taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                      .++++..+...+||.|.+|+.++++...|+.  -|....+.|.+|++|.+++.
T Consensus         4 ~a~n~f~a~i~dELsFlkg~~lk~l~~~d~~--nw~~ael~g~~g~~P~Nai~   54 (222)
T KOG3601|consen    4 VAKNDFLAGIRDELSFLKGDNLKILNMEDDI--NWYKAELDGPEGFIPKNAIR   54 (222)
T ss_pred             hhhhhhhhcCcccceeecCCceEecchHHhh--hhhhHhhcCccccCcccccc
Confidence            4577888899999999999999999876632  37778889999999998873

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=80.30  E-value=1.1  Score=37.39  Aligned_cols=42  Identities=31%  Similarity=0.365  Sum_probs=28.5

Q ss_pred             ccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhh
Q psy7683         458 NNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLG  502 (514)
Q Consensus       458 ~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~  502 (514)
                      ....+|.++.|+.+.|+...+.+   -|++| ..|+.||+++.++.
T Consensus        28 ~G~kDLpi~~GE~LeVI~~t~~~---kvlCRN~~GKYGYV~~~~L~   70 (89)
T PF14603_consen   28 WGGKDLPIKPGEILEVIQFTDDN---KVLCRNSEGKYGYVLRSHLL   70 (89)
T ss_dssp             --TTB----TT-B-EEEEESSSS---EEEEEETTTEEEEEEGGGS-
T ss_pred             CCcccCCcCCCCEEEEEEeCCCC---eEEEeCCCCceeEEEHHHcc
Confidence            35678999999999999887655   88888 68999999998874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	514
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		1e-74
1ycs_B	239	P53-53bp2 Complex Length = 239		4e-73
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		1e-58
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		6e-15
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		4e-12
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		8e-12
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-11
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-11
2xee_A	157	Structural Determinants For Improved Thermal Stabil		2e-11
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-11
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		4e-11
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-11
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-11
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-10
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		1e-10
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		3e-10
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-10
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-10
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-10
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		5e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		6e-10
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		7e-10
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-09
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		3e-09
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-09
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		5e-09
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		5e-09
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-09
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		6e-09
1uoh_A	226	Human Gankyrin Length = 226		6e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-09
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		7e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-09
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		1e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		3e-08
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		6e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		6e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		8e-08
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-07
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		2e-07
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		2e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		2e-07
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		3e-07
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		4e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		4e-07
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		9e-07
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-06
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-06
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		1e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-06
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		2e-06
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		3e-06
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		5e-06
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		5e-06
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		6e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		7e-06
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		7e-06
1gri_A	217	Grb2 Length = 217		9e-06
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-05
1bu1_A	57	Src Family Kinase Hck Sh3 Domain Length = 57		1e-05
1wyx_A	69	The Crystal Structure Of The P130cas Sh3 Domain At		1e-05
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		1e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-05
4hck_A	72	Human Hck Sh3 Domain, Nmr, 25 Structures Length = 7		1e-05
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		2e-05
2pz1_A	466	Crystal Structure Of Auto-Inhibited Asef Length = 4		2e-05
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		2e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		2e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-05
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		2e-05
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		2e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		3e-05
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		3e-05
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		3e-05
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		3e-05
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		3e-05
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		3e-05
4esr_A	69	Molecular And Structural Characterization Of The Sh		3e-05
3nmz_D	116	Crytal Structure Of Apc Complexed With Asef Length		3e-05
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		4e-05
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		4e-05
2hda_A	64	Yes Sh3 Domain Length = 64		4e-05
1aze_A	56	Nmr Structure Of The Complex Between The C32s-Y7v M		4e-05
1wa7_A	65	Sh3 Domain Of Human Lyn Tyrosine Kinase Length = 65		4e-05
2oi3_A	86	Nmr Structure Analysis Of The Hematopoetic Cell Kin		5e-05
2dx1_A	482	Crystal Structure Of Rhogef Protein Asef Length = 4		5e-05
2jte_A	64	Third Sh3 Domain Of Cd2ap Length = 64		6e-05
2kgt_A	72	Solution Structure Of Sh3 Domain Of Ptk6 Length = 7		6e-05
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		7e-05
2ysq_A	81	Solution Structure Of The Sh3 Domain From Rho Guani		8e-05
3rea_B	61	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		9e-05
2xmf_A	60	Myosin 1e Sh3 Length = 60		1e-04
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		1e-04
3reb_B	90	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		1e-04
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		1e-04
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		1e-04
1x2p_A	68	Solution Structure Of The Sh3 Domain Of The Protein		2e-04
2dl7_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		2e-04
3m0s_A	57	Crystal Structure Of The R21d Mutant Of Alpha-Spect		2e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		2e-04
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		2e-04
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		2e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		2e-04
3m0p_A	62	Crystal Structure Of The R21d Mutant Of Alpha-Spect		2e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		2e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		2e-04
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		2e-04
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		2e-04
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		2e-04
3so8_A	162	Crystal Structure Of Ankra Length = 162		2e-04
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		2e-04
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		2e-04
1uhc_A	79	Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of		2e-04
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		2e-04
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-04
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		2e-04
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		3e-04
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		3e-04
2k2m_A	68	Structural Basis Of Pxxdy Motif Recognition In Sh3		3e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-04
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		3e-04
2rol_A	64	Structural Basis Of Pxxdy Motif Recognition In Sh3		3e-04
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		3e-04
1hd3_A	62	A-Spectrin Sh3 Domain F52y Mutant Length = 62		4e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		4e-04
1fyn_A	62	Phosphotransferase Length = 62		4e-04
2krn_A	60	High Resolution Structure Of The Second Sh3 Domain		5e-04
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		5e-04
3ua6_A	64	Crystal Structure Of The Human Fyn Sh3 Domain Lengt		5e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		5e-04
1avz_C	57	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 D		5e-04
1a0n_B	69	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		6e-04
1azg_B	67	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		6e-04
1shf_A	59	Crystal Structure Of The Sh3 Domain In Human Fyn; C		6e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		6e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		7e-04
1m27_C	61	Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX		7e-04
1uue_A	62	A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length =		7e-04
1pwt_A	61	Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Tw		8e-04
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		8e-04
3rbb_B	61	Hiv-1 Nef Protein In Complex With Engineered Hck Sh		8e-04
3h0f_A	73	Crystal Structure Of The Human Fyn Sh3 R96w Mutant		8e-04
3i9q_A	57	Crystal Structure Of The Triple Mutant S19g-P20d-R2		8e-04
3h0h_A	73	Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Le		8e-04
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		9e-04
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		9e-04

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score =  277 bits (708), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 124/201 (61%), Positives = 153/201 (76%)
Query: 309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
           V F+PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQF
Sbjct: 33  VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQF 92
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXX 428
           G +VNA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K         
Sbjct: 93  GVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT 152
Query: 429 XXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK 488
                LY VQEK+GI+N G +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++
Sbjct: 153 QCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWAR 212
Query: 489 LNNKEGYVPRNLLGLYPRVQP 509
           LN+KEGYVPRNLLGLYPR++P
Sbjct: 213 LNDKEGYVPRNLLGLYPRIKP 233

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score =  272 bits (695), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 122/197 (61%), Positives = 150/197 (76%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQFG +V
Sbjct: 37  PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXXXXXXXX 432
           NA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA K             
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156
Query: 433 XLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK 492
            LY VQEK+GI+N G +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++LN+K
Sbjct: 157 FLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDK 216
Query: 493 EGYVPRNLLGLYPRVQP 509
           EGYVPRNLLGLYPR++P
Sbjct: 217 EGYVPRNLLGLYPRIKP 233

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score =  224 bits (570), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 105/203 (51%), Positives = 136/203 (66%)
Query: 307 RCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLV 366
           R    +PL LLLDA+L GELE+V +  + + DPS  N+EGITALHNAIC  ++ IV FL+
Sbjct: 15  RRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLI 74
Query: 367 QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKXXXXXXX 426
             G +VN+ DS GW PLHCAASCN+  +   LV+HGA IFATT SD  TA  K       
Sbjct: 75  TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREG 134
Query: 427 XXXXXXXLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 486
                  L  V++ +G++N+GAVYAL+DY A   DELSF+ GE + VLR+    E +WWW
Sbjct: 135 YADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWW 194
Query: 487 SKLNNKEGYVPRNLLGLYPRVQP 509
           + L+ +EGYVPRN  GL+PRV+P
Sbjct: 195 AALHGQEGYVPRNYFGLFPRVKP 217

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 79.0 bits (193), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/98 (39%), Positives = 59/98 (60%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
           FD  A+ L A   G+ E V++      D + AN +G+TALH A    + D+V+FLV+ G 
Sbjct: 38  FDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGA 97
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
           ++N  D++GW+PLH AASC  L +  +L+  GA + A 
Sbjct: 98  NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+  G+LE+V    +   D +A++  GIT LH A   GH +IV  L++ G DV
Sbjct: 42  PLHL---AAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADV 98
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           NA D  GW PLH AA    L +V  L++HGA + A
Sbjct: 99  NAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
           + PL L   A+  G LE+V    +   D +A++  GIT LH A   GH +IV  L++ G 
Sbjct: 48  YTPLHL---AASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGA 104
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           DVNA D+DG  PLH AA   +L +V  L++HGA + A
Sbjct: 105 DVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
           + PL L   A+ EG LE+V    +   D +A + +G T LH A   GH +IV  L++ G 
Sbjct: 36  YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           DVNA+D DG+ PLH AA   +L +V  L++ GA + A
Sbjct: 93  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
           + PL L   A+ EG LE+V    +   D +A + +G T LH A   GH +IV  L++ G 
Sbjct: 48  YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 104
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           DVNA+D DG+ PLH AA   +L +V  L++ GA + A
Sbjct: 105 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 141

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 40/97 (41%), Positives = 57/97 (58%), Gaps = 3/97 (3%)
Query: 311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
           + PL L   A+ EG LE+V    +   D +A + +G T LH A   GH +IV  L++ G 
Sbjct: 36  YTPLHL---AAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 92
Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           DVNA+D DG+ PLH AA   +L +V  L++ GA + A
Sbjct: 93  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 129

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 56/91 (61%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +D+G T LH A   GH +IV  L++ G DVNA+D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           +DGW PLH AA   +L +V  L+++GA + A
Sbjct: 78  TDGWTPLHLAADNGHLEIVEVLLKYGADVNA 108

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L+++    G LE++    +   D +A++  G T LH A   GH +IV  L+++G DV
Sbjct: 50  PLHLVVN---NGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           NA D  G+ PLH AA   +L +V  L+++GA
Sbjct: 107 NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGA 137

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 35/84 (41%), Positives = 50/84 (59%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
           A+  G LE+V    R   D +A +  G T LH A   GH +IV  L+++G DVNA+D+ G
Sbjct: 42  AAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATG 101
Query: 380 WMPLHCAASCNNLAMVRFLVEHGA 403
             PL+ AA   +L +V  L++HGA
Sbjct: 102 ITPLYLAAYWGHLEIVEVLLKHGA 125

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/95 (43%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+  G LE+V    +   D  A++  G T LH A   GH +IV  L++ G DV
Sbjct: 50  PLHL---AAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           NA DSDG  PLH AA    L +V  L++HGA + A
Sbjct: 107 NAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
           V + PL L   A+  G LE+V    +   D +A +  G+T LH A   GH ++V  L++ 
Sbjct: 46  VGWTPLHL---AAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           G DVNA D +G+ PLH AA+  +L +V  L++HGA
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGA 137

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+++G LE+V    +   D +AA+  G T LH A   GH +IV  L++ G DV
Sbjct: 50  PLHL---AAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           NA D+ G+ PLH AA   +L +V  L+++GA + A
Sbjct: 107 NATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNA 141

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +D G+T LH A   GH +IV  L++ G DVNA D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           S G  PLH AA+  +L +V  L+E+GA + A
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A++ G LE+V    +   D  AA+  G T LH A   GH +IV  L+++G DV
Sbjct: 50  PLHL---AAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           NA D  G  PLH AA   +L +V  L+++GA
Sbjct: 107 NAFDMTGSTPLHLAADEGHLEIVEVLLKYGA 137

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 56/91 (61%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +++G+T LH A   GH +IV  L+++G DVNA+D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           + G  PLH AA   +L +V  L++HGA + A
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNA 108

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 52/87 (59%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +D G+T LH A   GH +IV  L++ G DVNA+D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
             G  PLH AA+  +L +V  L+E+GA
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGA 104

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+  G LE+V        D +A +  G T LH A   GH ++V+ L++ G DV
Sbjct: 5   PLHL---AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           NA+D +G  PLH AA   +L +V+ L+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+  G LE+V        D +A +  G T LH A   GH ++V+ L++ G DV
Sbjct: 5   PLHL---AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           NA+D +G  PLH AA   +L +V+ L+E GA + A
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 62.4 bits (150), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 56/95 (58%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+  G LE+V    +   D +A ++ G T LH A   GH +IV  L++ G DV
Sbjct: 50  PLHL---AAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           NA+D +G+ PLH AA   +L +V  L+++GA + A
Sbjct: 107 NAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/91 (40%), Positives = 53/91 (58%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +D G+T LH A   GH +IV  L++ G DVNA D
Sbjct: 18  LLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
             G  PLH AA+  +L +V  L+E+GA + A
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNA 108

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
           A+ EG  E+V        D +A + +G T LH A   GH +IV+ L+  G DVNA+DSDG
Sbjct: 44  AAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDG 103
Query: 380 WMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHET 415
             PLH AA   +  +V+ L+  GA +  T+ SD  T
Sbjct: 104 RTPLHYAAKEGHKEIVKLLISKGADV-NTSDSDGRT 138

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/66 (43%), Positives = 41/66 (62%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           DP+A + +G T LH A   GH ++V+ L+  G D NA+DSDG  PLH AA   +  +V+ 
Sbjct: 62  DPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 398 LVEHGA 403
           L+  GA
Sbjct: 122 LLSQGA 127

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/92 (39%), Positives = 53/92 (57%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +  G T LH A   GH +IV  L++ G DVNA+D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFAT 408
           S G  PLH AA   +L +V  L+++GA + A+
Sbjct: 78  SLGVTPLHLAARRGHLEIVEVLLKNGADVNAS 109

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 55/95 (57%), Gaps = 3/95 (3%)
Query: 309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
           V + PL L   A+  G LE+V    +   D +A +  G T LH A   GH +IV  L++ 
Sbjct: 46  VGWTPLHL---AAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           G DVNA+D +G  PLH AA+  +L +V  L+++GA
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGA 137

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+  G LE+V    +   D +A +  G T LH A   GH +IV  L+++G DV
Sbjct: 50  PLHL---AARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           NA D+ G  PLH AA   +L +V  L+++GA + A
Sbjct: 107 NADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNA 141

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 334 RLVKDPSAA---NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
           R++ D S A   + +  TALH A  AGH +IV FL+Q G  VN +D  GW PLH AAS  
Sbjct: 25  RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 391 NLAMVRFLVEHGACIFAT 408
              +V+ L+  GA + A 
Sbjct: 85  RDEIVKALLVKGAHVNAV 102

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 35/87 (40%), Positives = 49/87 (56%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +  G+T LH A   GH +IV  L++ G DVNA D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAID 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
             G  PLH AA   +L +V  L++HGA
Sbjct: 78  IXGSTPLHLAALIGHLEIVEVLLKHGA 104

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 37/61 (60%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           TALH A  AGH +IV FL+Q G  VN +D  GW PLH AAS     +V+ L+  GA + A
Sbjct: 43  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 102
Query: 408 T 408
Sbjct: 103 V 103

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
Query: 334 RLVKDPSAA---NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
           R++ D S A   + +  TALH A  AGH +IV FL+Q G  VN +D  GW PLH AAS  
Sbjct: 25  RILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAG 84
Query: 391 NLAMVRFLVEHGACIFAT 408
              +V+ L+  GA + A 
Sbjct: 85  XDEIVKALLVKGAHVNAV 102

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 30/61 (49%), Positives = 37/61 (60%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           TALH A  AGH +IV FL+Q G  VN +D  GW PLH AAS     +V+ L+  GA + A
Sbjct: 42  TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA 101
Query: 408 T 408
Sbjct: 102 V 102

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 53/91 (58%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L++A+  G  + V        D +A++ +G T LH+A   GH ++V+ L+  G DVNA+D
Sbjct: 8   LIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           SDG  PLH AA   +  +V+ L+  GA + A
Sbjct: 68  SDGRTPLHHAAENGHKEVVKLLISKGADVNA 98

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+  G LE+V    +   D +A +  G T LH A   GH +IV  L++ G DV
Sbjct: 50  PLHL---AATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           NA D+ G  PLH AA   +L +V  L++HGA
Sbjct: 107 NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGA 137

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 58.5 bits (140), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 3/95 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+  G LE+V    +   D +A +  G+T L  A   GH +IV  L++ G DV
Sbjct: 50  PLHL---AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           NA D +G  PLH AA   +L +V  L+++GA + A
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/87 (39%), Positives = 50/87 (57%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L++A+  G  + V        DP+A++ +G T LH A   GH +IV+ L+  G D NA+D
Sbjct: 8   LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKD 67
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
           SDG  PLH AA   +  +V+ L+  GA
Sbjct: 68  SDGRTPLHYAAENGHKEIVKLLLSKGA 94

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Query: 317 LLDASLEG---ELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           LL+A+  G   E+ ++M       D +A ++ G+T L+ A   GH +IV  L++ G DVN
Sbjct: 18  LLEAARAGQDDEVRILMANG---ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           A D+ G+ PLH AA   +L +   L++HGA
Sbjct: 75  AVDAIGFTPLHLAAFIGHLEIAEVLLKHGA 104

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/91 (39%), Positives = 52/91 (57%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A + +G T LH A    H +IV  L++ G DVNA D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           +DG  PLH AA   +L +V  L++HGA + A
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNA 108

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 55.1 bits (131), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 3/97 (3%)
Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PL L   A+ EG  E+V        + +  N  G+T LH     GH  +   L++ G  V
Sbjct: 248 PLHL---AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 304
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
           +A    G+ PLH A+   N+ +V+FL++H A + A T
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +P   +  G   +H+A  AG  D ++ L++F  DVN +D++G +PLH AA   +L +V F
Sbjct: 62  NPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGA 403
           LV+H A
Sbjct: 122 LVKHTA 127

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +P   +  G   +H+A  AG  D ++ L++F  DVN +D++G +PLH AA   +L +V F
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGACIFATTHSDHE 414
           LV+H A      H +H+
Sbjct: 122 LVKHTAS--NVGHRNHK 136

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +P   +  G   +H+A  AG  D ++ L++F  DVN +D++G +PLH AA   +L +V F
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGACIFATTHSDHE 414
           LV+H A      H +H+
Sbjct: 122 LVKHTAS--NVGHRNHK 136

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 51/91 (56%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +  G T LH A   GH +IV  L++ G DVNA  
Sbjct: 18  LLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           + G  PLH AA  ++L +V  L++HGA + A
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNA 108

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYDY+A   DEL+FK G+ IIV +K   +   WW  +LN K G+VP N
Sbjct: 7   VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPAN 54

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYDY+A   DEL+FK G+ IIV +K   +   WW  +LN K G+VP N
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPAN 53

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +P   +  G   +H+A  AG  D ++ L++F  DVN +D++G +PLH AA   +L +V F
Sbjct: 62  NPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGA 403
           LV+H A
Sbjct: 122 LVKHTA 127

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 50/91 (54%), Gaps = 5/91 (5%)
Query: 328 LVMKTARLVKDPSAAND----EGITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMP 382
           LV K A++  D +A  D    +G TALH A    +  IV++LV + G + + QD DG  P
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 383 LHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
           +  AA    + +V +L++ GA + A   +DH
Sbjct: 317 IXLAAQEGRIEVVXYLIQQGASVEAVDATDH 347

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+A+  G+ + V        D +A +  G+T LH A    H +IV  L++ G DVNA D
Sbjct: 18  LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
           + G  PLH  A   +L +V  L++HGA
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGA 104

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 1/92 (1%)
Query: 317 LLDASLEGELELVMKTAR-LVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
           LL+A+  G  E +M     L  +  A++    T LH A       IV+ L+Q G DV+A+
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK 87
Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           D  G +PLH A S  +  +   L++HGAC+ A
Sbjct: 88  DKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEG--ITALHNAICAGHFDIVRFLVQFGCDVNA 374
           LL+A+  G++E V K    V+  +  + EG   T LH A       +V +L+Q G DV+A
Sbjct: 16  LLEAAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 74
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +D  G +PLH A S  +  +   LV+HGA +
Sbjct: 75  KDKGGLVPLHNACSYGHYEVAELLVKHGAVV 105

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEG--ITALHNAICAGHFDIVRFLVQFGCDVNA 374
           LL+A+  G++E V K    V+  +  + EG   T LH A       +V +L+Q G DV+A
Sbjct: 14  LLEAAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 72
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +D  G +PLH A S  +  +   LV+HGA +
Sbjct: 73  KDKGGLVPLHNACSYGHYEVAELLVKHGAVV 103

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEG--ITALHNAICAGHFDIVRFLVQFGCDVNA 374
           LL+A+  G++E V K    V+  +  + EG   T LH A       +V +L+Q G DV+A
Sbjct: 12  LLEAAKAGDVETVKKLCT-VQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70
Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +D  G +PLH A S  +  +   LV+HGA +
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 40/66 (60%)
Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +P   +  G   +H+A  AG  D ++ L++   DVN +D++G +PLH AA   +L +V F
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Query: 398 LVEHGA 403
           LV+H A
Sbjct: 122 LVKHTA 127

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V A+YDY ANN DELSF  G+ I V+ K D +   WW  ++N   G  P N + +     
Sbjct: 21  VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSNYVKMTTDSD 77
Query: 509 PS 510
           PS
Sbjct: 78  PS 79

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%)
Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
           N  G T LH A   G    V +L+Q G D N +D  GW PLH A +  +L +V  L++H 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHK 66
Query: 403 ACIFATTHSD 412
           A +  T + +
Sbjct: 67  ALVNTTGYQN 76

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 7/91 (7%)
Query: 317 LLDASLEGELELV---MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDV 372
           L++A+    LE V   +K   LV DP  A  EG T LH A   GH+++V++L+  G  DV
Sbjct: 48  LMEAAENNHLEAVKYLIKAGALV-DPKDA--EGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104
Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           N QD  GW P+  A    ++ +V+ L+  G+
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGS 135

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           A YD++A   DELSFK G+ + VL   +E ++ W+ ++LN K+G++P+N + + P
Sbjct: 14  AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKNYIEMKP 66

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           V A+YDY ANN DELSF  G+ I V+ K D    +WW  ++N   G  P N + +
Sbjct: 37  VIAMYDYAANNEDELSFSKGQLINVMNKDDP---DWWQGEINGVTGLFPSNYVKM 88

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALYD+EA   DEL F++GE + VL   D +   WW  +L+NK G  P N
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 51

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALYD+EA   DEL F++GE + VL   D +   WW  +L+NK G  P N
Sbjct: 8   ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 53

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALYD+EA   DEL F++GE + VL   D +   WW  +L+NK G  P N
Sbjct: 10  ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 55

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 35/99 (35%), Positives = 54/99 (54%), Gaps = 12/99 (12%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  LLD++  G L+L            A N +G+TALH A+     + V+ L++ G D++
Sbjct: 95  LRALLDSAAPGTLDL-----------EARNYDGLTALHVAVNTECQETVQLLLERGADID 143
Query: 374 AQD-SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS 411
           A D   G  PL  A   N+L+MV+ L++HGA + A  +S
Sbjct: 144 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS 182

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALYD+EA   DEL F++GE + VL   D +   WW  +L+NK G  P N
Sbjct: 7   ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 52

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           A YD++A   DELSFK G+ + VL   +E ++ W+ ++LN K+G++P+N + + P
Sbjct: 5   AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKNYIEMKP 57

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
           A+ +G L +V++  +   DPS  + EG + +H A   GH  IV +L+  G DV+  D +G
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNG 142
Query: 380 WMPLHCAA 387
             PL  AA
Sbjct: 143 MTPLMWAA 150

>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain Length = 57

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+P N
Sbjct: 3   VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 51

>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A Resolution Length = 69

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLYPR 506
           ALYD  A + DELSF+ G+ + VL +  +    WW   L+ ++G VP N    L+G+Y +
Sbjct: 8   ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDK 67

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N +  Y
Sbjct: 7   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVAPY 59

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
            + +G T LHNA   GH + V+ L+  G DVNA+  DG  PLH AA   +  +V+ L+  
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 402 GACIFATT 409
           GA + A +
Sbjct: 65  GADVNARS 72

>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures Length = 72

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+P N
Sbjct: 12  VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 60

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 2/109 (1%)
Query: 310 SFDPLALLLDASL--EGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
            + P+ L   A+L  + ++E V++  RL    + A+  G TAL  A+  G  D+V+ L+ 
Sbjct: 145 GYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLA 204
Query: 368 FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
              DVN QD DG   L CA    +  +   L+   +C  + T  D  TA
Sbjct: 205 CEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA 253

>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef Length = 466

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 443 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ++++G+V    AL+D+   +  EL FK G+ I V+   D   REWWW ++ + EG+ P +
Sbjct: 24  LISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPAS 80
Query: 500 LLGL 503
            + L
Sbjct: 81  FVRL 84

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N +  Y
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY 57

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L +++  S    LEL+ + A     P+  +  G + +H+A   G  D ++ LV+ G DVN
Sbjct: 40  LQVMMFGSTAIALELLKQGA----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 95
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
             D  G +P+H A    + A+V FL
Sbjct: 96  VPDGTGALPIHLAVQEGHTAVVSFL 120

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L +++  S    LEL+ + A     P+  +  G + +H+A   G  D ++ LV+ G DVN
Sbjct: 46  LQVMMFGSTAIALELLKQGA----SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
             D  G +P+H A    + A+V FL
Sbjct: 102 VPDGTGALPIHLAVQEGHTAVVSFL 126

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 502
           V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+P N + 
Sbjct: 5   VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 56

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 501
           V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+P N +
Sbjct: 11  VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYV 61

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 35/58 (60%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           L  A  AG  D VR L+  G DVNA+D DG+ PLH AA   +L +V  L++ GA + A
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 63

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L +++  S    LEL+ + A     P+  +  G + +H+A   G  D ++ LV+ G DVN
Sbjct: 46  LQVMMFGSPAVALELLKQGA----SPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 101
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
           A DS G +P+H A    + ++V FL
Sbjct: 102 ALDSTGSLPIHLAIREGHSSVVSFL 126

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L +++  S    LEL+ + A     P+  +  G + +H+A   G  D ++ LV+ G DVN
Sbjct: 48  LQVMMFGSPAVALELLKQGA----SPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 103
Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
           A DS G +P+H A    + ++V FL
Sbjct: 104 ALDSTGSLPIHLAIREGHSSVVSFL 128

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY++      +L+FK G+ I +L+K D ++ +WW  + N KEG  P N
Sbjct: 8   ALYNFAGEQPGDLAFKKGDVITILKKSD-SQNDWWTGRTNGKEGIFPAN 55

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V  +YDY A N DEL+F  G+ I VL K D +   WW  +++ + G  P N + L   + 
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDPD---WWKGEVSGQVGLFPSNYVKLTTDMD 61
Query: 509 PS 510
           PS
Sbjct: 62  PS 63

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N +  Y
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY 57

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 499
           V ALYDY AN +DEL+   G+ I V  K +E   +WW+  +   +EGY P N
Sbjct: 9   VVALYDYTANRSDELTIHRGDIIRVFFKDNE---DWWYGSIGKGQEGYFPAN 57

>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef Length = 116

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 443 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ++++G+V    AL+D+   +  EL FK G+ I V+   D   REWWW ++ + EG+ P +
Sbjct: 30  LISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPAS 86
Query: 500 LLGL 503
            + L
Sbjct: 87  FVRL 90

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 442 GILNNGA----VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGY 495
           GI   G+    V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY
Sbjct: 1   GIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGY 56
Query: 496 VPRNLL 501
           +P N +
Sbjct: 57  IPSNYV 62

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA  T++LSFK GE   ++   +  E +WW ++     K GY+P N
Sbjct: 32  ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKSGYIPSN 79

>pdb|2HDA|A Chain A, Yes Sh3 Domain Length = 64

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA  T++LSFK GE   ++   +  E +WW ++     K GY+P N
Sbjct: 10  ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKNGYIPSN 57

>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10 Structures Length = 56

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 36/51 (70%), Gaps = 2/51 (3%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           A  D++A   DELSFK G+ + VL   +E+++ W+ ++LN K+G++P+N +
Sbjct: 5   AKVDFKATADDELSFKRGDILKVL--NEESDQNWYKAELNGKDGFIPKNYI 53

>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3 Domain Complexed With An Artificial High Affinity Ligand (Pd1) Length = 86

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/53 (45%), Positives = 34/53 (64%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+P N
Sbjct: 28  VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 76

>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef Length = 482

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 443 ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ++++G+V    AL+D+   +  EL FK G+ I V    D   REWWW ++ + EG+ P +
Sbjct: 61  LISDGSVVCAEALWDHVTXDDQELGFKAGDVIEVX---DATNREWWWGRVADGEGWFPAS 117
Query: 500 LLGL 503
            + L
Sbjct: 118 FVRL 121

>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap Length = 64

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 500
           L+ Y   N DEL+F+ GE I ++ K +  E  WW  +LN KEG  P N 
Sbjct: 12  LFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWKGELNGKEGVFPDNF 59

>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6 Length = 72

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 10/58 (17%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK------EGYVPRNLLG 502
            L+D+++   +ELSF+ G+   V RK    E +WWW+ L ++      +GYVP N L 
Sbjct: 15  GLWDFKSRTDEELSFRAGDVFHVARK----EEQWWWATLLDEAGGAVAQGYVPHNYLA 68

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           ALY +    + +L F+ G+ I +L+K D ++ +WW  ++N +EG  P N + L
Sbjct: 8   ALYSFAGEESGDLPFRKGDVITILKKSD-SQNDWWTGRVNGREGIFPANYVEL 59

>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine Nucleotide Exchange Factor 9 Length = 81

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 504
           A++D+      EL+FK G+ I VL   D + ++WWW +++++EG+ P + + L+
Sbjct: 15  AVWDHVTMANRELAFKAGDVIKVL---DASNKDWWWGQIDDEEGWFPASFVRLW 65

>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 61

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V ALYDY + + D+LSF+ G+ ++VL    E   EWW ++     KEGY+P N
Sbjct: 6   VVALYDYVSWSPDDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 54

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 442 GILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           G L +    ALY Y+A +TDELSF   + I +++   E+   WW  +L  K+G  P N
Sbjct: 1   GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIK---EDPSGWWTGRLRGKQGLFPNN 55

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L P ++
Sbjct: 8   IFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63

>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 90

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V ALYDY + + D+LSF+ G+ ++VL    E   EWW ++     KEGY+P N
Sbjct: 6   VVALYDYVSWSPDDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 54

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L P
Sbjct: 9   IFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLP 61

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD-SDGWMPLHCAASCNNLAMVRFLV 399
           A N  G T LH A   G+  IV  LV  G DVNAQ+  +G   LH A    N  +V  L+
Sbjct: 112 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 171
Query: 400 EHGACIFATTHSDH 413
           + GA +   T+  +
Sbjct: 172 KCGADVNRVTYQGY 185

>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein Arginine N-Methyltransferase 2 Length = 68

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 502
           A+ DY A +  +LSF  GE I++LR   +   +WWW +     GY+P N +G
Sbjct: 12  AIADYAATDETQLSFLRGEKILILR---QTTADWWWGERAGCCGYIPANHVG 60

>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Kiaa0769 Protein Length = 73

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           V ALYDYE    DELSF  G  I +L K ++++  +W  + N + G  P  L+
Sbjct: 11  VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63

>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 7 Length = 57

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           V ALYDY+  + DE++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 4   VLALYDYQEKSPDEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 49

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           L  A  AG  D VR L+  G DV A+D +G  PLH AA   +L +V+ L+E GA + A
Sbjct: 28  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA 85

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           V ALYD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N +
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSNFV 57

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           V A+YD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N +
Sbjct: 20  VRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSNFV 69

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 324 GELELV--MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM 381
           G LE+V  +    L  D +   ++G+T LH A+    F++ +FL++ G  V  +D    +
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 382 PLHCAASCNNLAMVRFLVEHG 402
           PLH AAS  +L ++  L   G
Sbjct: 143 PLHRAASVGSLKLIELLCGLG 163

>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 4. Length = 62

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           V ALYDY+  + DE++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 9   VLALYDYQEKSPDEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 324 GELELV--MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM 381
           G LE+V  +    L  D +   ++G+T LH A+    F++ +FL++ G  V  +D    +
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 382 PLHCAASCNNLAMVRFLVEHG 402
           PLH AAS  +L ++  L   G
Sbjct: 143 PLHRAASVGSLKLIELLCGLG 163

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 2/81 (2%)
Query: 324 GELELV--MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM 381
           G LE+V  +    L  D +   ++G+T LH A+    F++ +FL++ G  V  +D    +
Sbjct: 83  GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQI 142
Query: 382 PLHCAASCNNLAMVRFLVEHG 402
           PLH AAS  +L ++  L   G
Sbjct: 143 PLHRAASVGSLKLIELLCGLG 163

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +     +Q
Sbjct: 9   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 65

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +     +Q
Sbjct: 8   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           V ALYDY+    DELSFK G+ +  L  G+E+E+ W   +L++ +       LGLYP
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKL--GEEDEQGWCRGRLDSGQ-------LGLYP 53

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG 369
            F PL   + A+  G++ +V    +   DP        +AL  A   G+ DIV+ L+  G
Sbjct: 34  GFTPL---MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 90
Query: 370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
            DVN  D +G  PL  A   N++  V+ L+E GA
Sbjct: 91  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 124

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L P
Sbjct: 15  IFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLP 67

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG 369
            F PL   + A+  G++ +V    +   DP        +AL  A   G+ DIV+ L+  G
Sbjct: 52  GFTPL---MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 108
Query: 370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
            DVN  D +G  PL  A   N++  V+ L+E GA
Sbjct: 109 VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 142

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG 369
            F PL   + A+  G++ +V    +   DP        +AL  A   G+ DIV+ L+  G
Sbjct: 36  GFTPL---MWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCG 92
Query: 370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
            DVN  D +G  PL  A   N++  V+ L+E GA
Sbjct: 93  VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGA 126

>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of Kiaa1010 Protein [homo Sapiens] Length = 79

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLL 501
           N   +A+Y ++A N +ELS    + + +L   D     EWW +++N K+GYVP N +
Sbjct: 13  NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/61 (44%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Query: 444 LNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 500
           LNN     V ALYD+EA   +EL+FK GE IIVL   D N   WW  + +   G  P N 
Sbjct: 12  LNNKVARKVRALYDFEAVEDNELTFKHGEIIIVLDDSDAN---WWKGENHRGIGLFPSNF 68
Query: 501 L 501
           +
Sbjct: 69  V 69

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD-SDGWMPLHCAASCNNLAMVRFLV 399
           A N  G T LH A   G+  IV  LV  G DVNAQ+  +G   LH A    N  +V  L+
Sbjct: 109 ATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 168
Query: 400 EHGACIFATTHSDH 413
           + GA +   T+  +
Sbjct: 169 KCGADVNRVTYQGY 182

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           ALYDY A N DEL    G+ + V+ +G++    WW  + N + G+VP + L
Sbjct: 13  ALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGSYL 60

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 328 LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA 387
           L+M+ AR+    +  N    T LH A   GH DIV+ L+Q+  D+NA +  G +PLH A 
Sbjct: 53  LIMRGARI----NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC 108
Query: 388 SCNNLAMVRFLVEHGACI 405
                 +   LV +GA +
Sbjct: 109 FWGQDQVAEDLVANGALV 126

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 32/97 (32%), Positives = 46/97 (47%), Gaps = 5/97 (5%)
Query: 310 SFDPLALLLDASLEGELE-LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF 368
            F PL           +E L+M+ AR+    +  N    T LH A   GH DIV+ L+Q+
Sbjct: 39  GFSPLHWACREGRSAVVEMLIMRGARI----NVMNRGDDTPLHLAASHGHRDIVQKLLQY 94
Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
             D+NA +  G +PLH A       +   LV +GA +
Sbjct: 95  KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV 131

>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding Length = 68

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 8/68 (11%)
Query: 442 GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVP 497
           G L +GA   V   YD++A N+ ELS K  + + VL    ++ R+WW  +    +EGYVP
Sbjct: 1   GPLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVL----DDSRKWWKVRDPAGQEGYVP 56
Query: 498 RNLLGLYP 505
            N+L  YP
Sbjct: 57  YNILTPYP 64

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           T LH A   GH +IV  L++ G DVNA+D      LH A   N+  +V  L+++GA
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA 124

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           ALY ++A   DEL+ + G+ +I+  K +E    WW+  LN K+G+ P
Sbjct: 12  ALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFP 55

>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding Length = 64

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP 505
           YD++A N+ ELS K  + + VL    ++ R+WW  +    +EGYVP N+L  YP
Sbjct: 14  YDFQARNSSELSVKQRDVLEVL----DDSRKWWKVRDPAGQEGYVPYNILTPYP 63

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
           L  A  AG  D VR L+  G DV A+D +G  PLH AA   +L +V+ L+E GA + A
Sbjct: 10  LLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNA 67

>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant Length = 62

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++GYVP
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGYVP 54

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L+ AS  GE+E V        DP     E  +AL  A   G+ DIV  L++   D+N  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
            +G  PL  A   N++  V  L+  GA +  TT +D
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGADL--TTEAD 133

>pdb|1FYN|A Chain A, Phosphotransferase Length = 62

Iteration: 1
 Score = 42.7 bits (99), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N
Sbjct: 9   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 56

>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of Cd2ap Length = 60

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           L+DY   N DEL    G+ I V+   +E E  WW   LNNK G  P N +
Sbjct: 10  LFDYSPQNEDELELIVGDVIDVI---EEVEEGWWSGTLNNKLGLFPSNFV 56

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           V ALYDYE    DELSFK G+ +  +   DE+E+ W   +L+N +       +GLYP
Sbjct: 431 VRALYDYEGQEHDELSFKAGDELTKME--DEDEQGWCKGRLDNGQ-------VGLYP 478

>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain Length = 64

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N
Sbjct: 10  ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 57

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L+ AS  GE+E V        DP     E  +AL  A   G+ DIV  L++   D+N  D
Sbjct: 40  LIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99
Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
            +G  PL  A   N++  V  L+  GA +  TT +D
Sbjct: 100 WNGGTPLLYAVHGNHVKCVEALLARGADL--TTEAD 133

>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain Length = 57

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N
Sbjct: 5   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 52

>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures Length = 69

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +     +Q
Sbjct: 10  ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 66

>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3-Kinase, Minimized Average (Probmap) Structure Length = 67

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 508
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +     +Q
Sbjct: 8   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64

>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin Length = 59

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N
Sbjct: 6   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 53

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.4 bits (98), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 43/89 (48%)
Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
           A+L G  +L+    +   +  A N +    LH A   GHF +V+ L+      N +D  G
Sbjct: 93  AALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSG 152
Query: 380 WMPLHCAASCNNLAMVRFLVEHGACIFAT 408
             PL  A S  +  +V  L++HGA I A+
Sbjct: 153 NTPLIYACSGGHHELVALLLQHGASINAS 181

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           +DY+A + DEL+   GE I  +RK D     WW  ++N + G  P N +
Sbjct: 8   FDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDNFV 53

>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX Length = 61

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N
Sbjct: 6   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 53

>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length = 62

Iteration: 1
 Score = 42.0 bits (97), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           V ALYDY+  +  E++ K G+ + +L   +   ++WW +++N ++G+VP
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKTEVNGRQGFVP 54

>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of Its Circular Permutants With Different Loop Lengths: Discerning The Reasons For Rapid Folding In Proteins Length = 61

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 8   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 53

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN---LLGLYPRV 507
           ALYD+E  N  EL FK G+ I +  + DEN   W+   L+   G+ P N   +L   P  
Sbjct: 12  ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALPHS 68
Query: 508 QPSA 511
            PS+
Sbjct: 69  GPSS 72

>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3 Domain Length = 61

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 6/53 (11%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           V ALYDY +  + +LSF+ G+ ++VL    E   EWW ++     KEGY+P N
Sbjct: 6   VVALYDYYSPFSWDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSN 54

>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant Length = 73

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N
Sbjct: 20  ALYDYEAWTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 67

>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of Alpha Spectrin Sh3 Domain Length = 57

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 497
           V ALYDY+     E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 4   VLALYDYQEKGDSEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 49

>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Length = 73

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 499
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N
Sbjct: 20  ALYDYEAITEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 67

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 503
           ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L
Sbjct: 13  IFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKL 63

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALYD+E  N  EL FK G+ I +  + DEN   W+   L+ + G+ P N
Sbjct: 16  ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGQSGFFPIN 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	514
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-78
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	8e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-72
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-25
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-17
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-13
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-24
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-18
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-24
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-22
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-08
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-23
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-22
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-23
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-21
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	8e-20
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	1e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-22
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-20
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	4e-22
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-19
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-15
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-22
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-21
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-20
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-21
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	7e-21
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	4e-21
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-21
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-19
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-11
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-17
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-21
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-15
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-21
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-19
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-16
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-21
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-19
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-21
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-21
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-19
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-04
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	8e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-21
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-20
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	9e-21
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-09
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-18
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-20
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-19
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-19
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-14
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-20
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-19
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-16
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-19
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-18
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-17
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	8e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	7e-20
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-17
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-19
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-07
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-19
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	9e-19
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-13
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-13
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	1e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-18
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-08
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	4e-18
2etb_A	256	Transient receptor potential cation channel subfam	1e-17
2etb_A	256	Transient receptor potential cation channel subfam	2e-17
2etb_A	256	Transient receptor potential cation channel subfam	8e-17
2etb_A	256	Transient receptor potential cation channel subfam	7e-14
2etb_A	256	Transient receptor potential cation channel subfam	5e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-08
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	2e-17
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	2e-17
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	2e-17
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	2e-17
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	3e-17
2rfa_A	232	Transient receptor potential cation channel subfa	4e-17
2rfa_A	232	Transient receptor potential cation channel subfa	1e-16
2rfa_A	232	Transient receptor potential cation channel subfa	4e-16
2rfa_A	232	Transient receptor potential cation channel subfa	5e-15
2rfa_A	232	Transient receptor potential cation channel subfa	2e-13
2rfa_A	232	Transient receptor potential cation channel subfa	4e-06
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	6e-17
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-16
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	1e-16
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	1e-16
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	1e-16
1wxb_A	68	Epidermal growth factor receptor pathway substrate	1e-16
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	2e-16
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	2e-16
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	2e-16
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	2e-16
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	3e-16
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	3e-16
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	3e-16
2pnn_A	273	Transient receptor potential cation channel subfa	4e-15
2pnn_A	273	Transient receptor potential cation channel subfa	1e-14
2pnn_A	273	Transient receptor potential cation channel subfa	7e-12
2pnn_A	273	Transient receptor potential cation channel subfa	7e-09
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	3e-16
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	4e-16
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	4e-16
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	4e-16
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	5e-16
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	6e-16
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	6e-16
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	6e-16
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	6e-16
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	6e-16
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	7e-16
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	7e-16
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	8e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-16
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-13
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-12
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	8e-16
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	8e-16
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	8e-16
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	9e-16
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	1e-15
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-15
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	1e-15
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	1e-15
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	1e-15
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	1e-15
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	1e-15
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	1e-15
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	2e-15
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	2e-15
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-15
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	2e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	2e-15
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	2e-15
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	2e-15
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	2e-15
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-15
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	3e-15
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	3e-15
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	3e-15
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	3e-15
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	3e-15
1i07_A	60	Epidermal growth factor receptor kinase substrate	4e-15
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	5e-15
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	5e-15
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	6e-15
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	6e-15
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	7e-15
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	7e-15
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	7e-15
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	7e-15
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	8e-15
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	8e-15
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	1e-14
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	1e-14
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	1e-14
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	1e-14
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	1e-14
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	1e-14
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	2e-14
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	2e-14
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	2e-14
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	2e-14
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	2e-14
3u23_A	65	CD2-associated protein; structural genomics, struc	2e-14
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	2e-14
1awj_A	77	ITK; transferase, regulatory intramolecular comple	2e-14
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	2e-14
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	2e-14
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	2e-14
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	3e-14
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	3e-14
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	3e-14
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	3e-14
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	3e-14
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	3e-14
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	4e-14
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	4e-14
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	5e-14
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	5e-14
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	6e-14
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	6e-14
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	6e-14
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	7e-14
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	7e-14
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	7e-14
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	9e-14
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	9e-14
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	1e-13
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-13
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	1e-13
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	2e-13
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	2e-13
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	2e-13
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	2e-13
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	2e-13
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	2e-13
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-13
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	3e-13
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	3e-13
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	2e-11
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	4e-13
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	5e-13
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	6e-13
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	6e-13
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	6e-13
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	7e-13
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	8e-13
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	8e-13
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	1e-12
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	9e-13
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	1e-12
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-11
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	1e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-05
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	1e-12
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	2e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-10
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	2e-12
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-12
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	2e-12
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	3e-12
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	3e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-09
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	6e-12
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	6e-12
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	7e-12
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	9e-12
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	1e-11
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	1e-11
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	1e-11
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	1e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	1e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-09
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	1e-11
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	2e-11
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	3e-11
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-11
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	4e-11
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-11
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	7e-07
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	5e-11
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	6e-11
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	9e-11
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	1e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-10
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	6e-07
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	1e-10
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	1e-10
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	1e-10
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	2e-10
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	2e-10
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-10
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	3e-10
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	3e-10
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	4e-10
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	5e-10
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	5e-10
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	6e-10
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	1e-09
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	1e-09
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-09
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-09
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-06
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	2e-09
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	3e-09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	4e-09
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	1e-07
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	8e-09
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	1e-08
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	3e-08
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	3e-08
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	1e-07
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	2e-07
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	5e-07
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	1e-06
1u3o_A	82	Huntingtin-associated protein-interacting protein;	6e-06
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	1e-05
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	2e-05
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	3e-05
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	1e-04
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	7e-04

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  243 bits (622), Expect = 7e-78
 Identities = 134/235 (57%), Positives = 171/235 (72%), Gaps = 15/235 (6%)

Query: 284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPL--ALLLDASLEGELELVMKTARLVK---D 338
             +N ++    +       +     V F+PL  ALLLD+SLEGE +LV    R++    D
Sbjct: 13  KRTNLRKTGSER-------IAHGMRVKFNPLPLALLLDSSLEGEFDLV---QRIIYEVDD 62

Query: 339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
           PS  NDEGITALHNA+CAGH +IV+FLVQFG +VNA DSDGW PLHCAASCNN+ + +FL
Sbjct: 63  PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 399 VEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN 458
           VE GA +FA T+SD +TAA KCEE EEG+  CS+FLY VQEK+GI+N G +YAL+DYE  
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ 182

Query: 459 NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATP 513
           N DEL  K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR++P    
Sbjct: 183 NDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQRS 237

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.0 bits (180), Expect = 8e-15
 Identities = 6/60 (10%), Positives = 15/60 (25%), Gaps = 1/60 (1%)

Query: 344 DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
             G  +L               +  G  V   +      L  ++      +V+ ++    
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVD 61

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 47.2 bits (113), Expect = 3e-06
 Identities = 5/41 (12%), Positives = 9/41 (21%), Gaps = 2/41 (4%)

Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           +  G + L      N        + HG  +           
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLAL 40

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  229 bits (586), Expect = 1e-72
 Identities = 112/208 (53%), Positives = 145/208 (69%), Gaps = 6/208 (2%)

Query: 305 KKRCVSFDPLALLLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDI 361
           K R    +PL LLLDA+L GELE+V    + VK   DPS  N+EGITALHNAIC  ++ I
Sbjct: 13  KARRARLNPLVLLLDAALTGELEVV---QQAVKEMNDPSQPNEEGITALHNAICGANYSI 69

Query: 362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCE 421
           V FL+  G +VN+ DS GW PLHCAASCN+  +   LV+HGA IFATT SD  TA  KC+
Sbjct: 70  VDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129

Query: 422 EDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENE 481
              EG+  C+ +L  V++ +G++N+GAVYAL+DY A   DELSF+ GE + VLR+    E
Sbjct: 130 PYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVTVLRRDGPEE 189

Query: 482 REWWWSKLNNKEGYVPRNLLGLYPRVQP 509
            +WWW+ L+ +EGYVPRN  GL+PRV+P
Sbjct: 190 TDWWWAALHGQEGYVPRNYFGLFPRVKP 217

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 3/47 (6%)

Query: 362 VRFLVQFGCDVNAQDS---DGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +R +++             +  + L  AA    L +V+  V+     
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP 47

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  106 bits (266), Expect = 1e-25
 Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 11/120 (9%)

Query: 287 NNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVK---DPSAAN 343
            ++   E           KK  V FD  A+ L A   G+ E V    RL++   D + AN
Sbjct: 19  GSETDLEP---PVVK--RKKTKVKFDDGAVFLAACSSGDTEEV---LRLLERGADINYAN 70

Query: 344 DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
            +G+TALH A    + D+V+FLV+ G ++N  D++GW+PLH AASC  L +  +L+  GA
Sbjct: 71  VDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGA 130

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 92.9 bits (232), Expect = 3e-21
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 7/109 (6%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +       G TALH A   G+ ++++ L+Q   DVN +D DGW PLH AA        R 
Sbjct: 191 NDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250

Query: 398 LVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNN 446
           LVE+   + A      +TA    +ED         +L  +Q+K  +L++
Sbjct: 251 LVENLCDMEAVNK-VGQTAFDVADED------ILGYLEELQKKQNLLHS 292

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 86.8 bits (216), Expect = 4e-19
 Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 9/97 (9%)

Query: 320 ASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
           A ++  ++    LV   A    + +  ++EG   LH A   G+ DI  +L+  G  V A 
Sbjct: 80  ACIDDNVDMVKFLVENGA----NINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAV 135

Query: 376 DSDGWMPLHCAASCNNLAMVRFLV-EHGACIFATTHS 411
           +S+G  PL  A       +++  V   G  I A    
Sbjct: 136 NSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 22/64 (34%), Positives = 33/64 (51%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
              +       A  +G  + V  L++ G D+N  + DG   LH A   +N+ MV+FLVE+
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

Query: 402 GACI 405
           GA I
Sbjct: 96  GANI 99

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 6/89 (6%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L  A  E   EL+      V   +    +   A          D  ++L     +     
Sbjct: 143 LDIAEEEAMEELL---QNEV---NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHA 196

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACI 405
             G   LH AA+     +++ L++    +
Sbjct: 197 KSGGTALHVAAAKGYTEVLKLLIQARYDV 225

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 68.7 bits (169), Expect = 5e-13
 Identities = 13/65 (20%), Positives = 19/65 (29%), Gaps = 1/65 (1%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
            A+ +           G    +   V        +  DG      A S  +   V  L+E
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLE 61

Query: 401 HGACI 405
            GA I
Sbjct: 62  RGADI 66

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 98.3 bits (246), Expect = 3e-24
 Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 6/87 (6%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           AS  GE+E V     L++   DP     E  +AL  A   G+ DIV  L++   D+N  D
Sbjct: 43  ASAFGEIETVRF---LLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYD 99

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
            +G  PL  A   N++  V  L+  GA
Sbjct: 100 WNGGTPLLYAVRGNHVKCVEALLARGA 126

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 5e-22
 Identities = 19/91 (20%), Positives = 39/91 (42%), Gaps = 7/91 (7%)

Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           +   + +GEL+ +      ++      +  ++ G T L  A   G  + VRFL+++G D 
Sbjct: 6   IHQLAAQGELDQL---KEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP 62

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           +    +    L  A++     +V  L+E   
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDV 93

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 89.8 bits (224), Expect = 3e-21
 Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  AS  G  ++V     L++   D +  +  G T L  A+   H   V  L+  G D+ 
Sbjct: 73  LSLASTGGYTDIV-GL--LLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT 129

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
            +   G+ P+  A +     + + +  H   +F + 
Sbjct: 130 TEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSN 165

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 80.5 bits (200), Expect = 5e-18
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 346 GITALHNAICAGHFDIVRFLVQFGCD-VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
              ++H     G  D ++  ++ G + VN  D  G+ PL  A++   +  VRFL+E GA
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGA 60

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 64.0 bits (157), Expect = 3e-12
 Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           LL A     ++ V     L+    D +   D G T +  A+  G+  + + +      + 
Sbjct: 106 LLYAVRGNHVKCVE---ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF 162

Query: 374 AQDSDGWMP 382
             +     P
Sbjct: 163 QSNLVPADP 171

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 40.1 bits (95), Expect = 4e-04
 Identities = 5/38 (13%), Positives = 12/38 (31%)

Query: 379 GWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
             + +H  A+   L  ++  +  G  +         T 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTP 39

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 97.1 bits (243), Expect = 7e-24
 Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+  G++ +V     L++   DP        +AL  A   G+ DIV+ L+  G DVN  D
Sbjct: 43  AAAHGQIAVVEF---LLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYD 99

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
            +G  PL  A   N++  V+ L+E GA
Sbjct: 100 WNGGTPLLYAVHGNHVKCVKMLLESGA 126

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 92.1 bits (230), Expect = 5e-22
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           +   + +GE+  +   A  ++     +  ++EG T L  A   G   +V FL+Q G D  
Sbjct: 7   VHQLAAQGEMLYL---ATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ 63

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
                    L  A S     +V+ L++ G 
Sbjct: 64  LLGKGRESALSLACSKGYTDIVKMLLDCGV 93

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 89.4 bits (223), Expect = 3e-21
 Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 6/96 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A  +G  ++V K   L+    D +  +  G T L  A+   H   V+ L++ G D  
Sbjct: 73  LSLACSKGYTDIV-KM--LLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT 129

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
            +   G+  +  A +    ++ + +  H   +    
Sbjct: 130 IETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNI 165

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.3 bits (215), Expect = 5e-20
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
              ++H     G    +   ++    +N  D +G+ PL  AA+   +A+V FL+++GA  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 53.5 bits (130), Expect = 1e-08
 Identities = 11/65 (16%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           LL A     ++  +K   L++   DP+   D G  ++  A+  G+  + + +      + 
Sbjct: 106 LLYAVHGNHVK-CVKM--LLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162

Query: 374 AQDSD 378
               +
Sbjct: 163 QNIKE 167

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 4/28 (14%), Positives = 10/28 (35%)

Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACI 405
              + +H  A+   +  +   +E    I
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVI 29

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 94.8 bits (237), Expect = 1e-23
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
            + A   G+L+ V K    V    D +   + G   LH A   G  +I+ FL+  G D+N
Sbjct: 11  FMWALKNGDLDEV-KD--YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           A D     PL  A    +++ V+ L+  GA
Sbjct: 68  APDKHHITPLLSAVYEGHVSCVKLLLSKGA 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 90.1 bits (225), Expect = 7e-22
 Identities = 22/65 (33%), Positives = 27/65 (41%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
                       A+  G  D V+  V  G DVN     G  PLH AA C  L ++ FL+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 401 HGACI 405
            GA I
Sbjct: 62  KGADI 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 73.6 bits (182), Expect = 4e-16
 Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 6/83 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G+LE +++   L+    D +A +   IT L +A+  GH   V+ L+  G D  
Sbjct: 44  LHYAADCGQLE-ILEF--LLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT 100

Query: 374 AQDSDGWMPLHCAASCNNLAMVR 396
            +  DG        +    A+++
Sbjct: 101 VKGPDGLTAFEATDNQAIKALLQ 123

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 93.6 bits (234), Expect = 6e-23
 Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 6/87 (6%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           AS++G++  V     L++   DP+  +  G T LH A   GH  +V  L+Q    VN   
Sbjct: 17  ASIKGDIPSVEY---LLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG 73

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
                PLH AA   ++ +V+ L+ +GA
Sbjct: 74  YQNDSPLHDAAKNGHVDIVKLLLSYGA 100

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 88.6 bits (221), Expect = 4e-21
 Identities = 25/65 (38%), Positives = 34/65 (52%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             N  G T LH A   G    V +L+Q G D N +D  GW PLH A +  +L +V  L++
Sbjct: 5   FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQ 64

Query: 401 HGACI 405
           H A +
Sbjct: 65  HKALV 69

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 84.8 bits (211), Expect = 8e-20
 Identities = 20/90 (22%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L +A   G L++V     L++     +    +  + LH+A   GH DIV+ L+ +G   N
Sbjct: 47  LHEACNHGHLKVV---ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRN 103

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           A +  G  P+      +  +++    ++ +
Sbjct: 104 AVNIFGLRPVDYTDDESMKSLLLLPEKNES 133

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 90.1 bits (224), Expect = 1e-22
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LL 501
           N    ALYD  A + DELSF+ G+ + VL +  +    WW   L+ ++G VP N    L+
Sbjct: 3   NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62

Query: 502 GLYPR 506
           G+Y +
Sbjct: 63  GMYDK 67

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 90.5 bits (226), Expect = 2e-22
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 8/91 (8%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A+  G LE    L+   A    D +A +  G T LH A   GH ++V+ L++ G DV
Sbjct: 6   LHLAARNGHLEVVKLLLEAGA----DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           NA+D +G  PLH AA   +L +V+ L+E GA
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 85.1 bits (212), Expect = 2e-20
 Identities = 27/60 (45%), Positives = 39/60 (65%)

Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           G T LH A   GH ++V+ L++ G DVNA+D +G  PLH AA   +L +V+ L+E GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.4 bits (109), Expect = 1e-06
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +G  PLH AA   +L +V+ L+E GA +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV 28

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 91.7 bits (229), Expect = 4e-22
 Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 8/93 (8%)

Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A+  G+++ V    RL+      P A N  G TAL      G   I   L++ G   
Sbjct: 6   LSGAAARGDVQEV---RRLLHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASP 61

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           N QD+ G  P+H AA    L  ++ LVEHGA +
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV 94

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 87.5 bits (218), Expect = 1e-20
 Identities = 21/64 (32%), Positives = 33/64 (51%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
            P+  +  G + +H+A   G  D ++ LV+ G DVN  D  G +P+H A    + A+V F
Sbjct: 60  SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF 119

Query: 398 LVEH 401
           L   
Sbjct: 120 LAAE 123

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 82.5 bits (205), Expect = 7e-19
 Identities = 25/88 (28%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           + DA+  G L+ + K   LV+   D +  +  G   +H A+  GH  +V FL     D++
Sbjct: 72  VHDAARTGFLDTL-KV--LVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLH 127

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEH 401
            +D+ G  PL  A       +V  L  H
Sbjct: 128 RRDARGLTPLELALQRGAQDLVDILQGH 155

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 73.2 bits (181), Expect = 1e-15
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 348 TALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
             L  A   G    VR L+ +     +A +  G   L       + A+   L++ GA  
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASP 61

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 90.9 bits (227), Expect = 4e-22
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G LE+V K   L++   D +A +  G T LH A   GH ++V+ L++ G DVN
Sbjct: 39  LHLAARNGHLEVV-KL--LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 95

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           A+D +G  PLH AA   +L +V+ L+E GA
Sbjct: 96  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 88.9 bits (222), Expect = 2e-21
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G LE+V K   L++   D +A +  G T LH A   GH ++V+ L++ G DVN
Sbjct: 6   LHLAARNGHLEVV-KL--LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           A+D +G  PLH AA   +L +V+ L+E GA
Sbjct: 63  AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 85.5 bits (213), Expect = 3e-20
 Identities = 27/58 (46%), Positives = 38/58 (65%)

Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           G T LH A   GH ++V+ L++ G DVNA+D +G  PLH AA   +L +V+ L+E GA
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.4 bits (109), Expect = 4e-06
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +G  PLH AA   +L +V+ L+E GA +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADV 28

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.0 bits (227), Expect = 1e-21
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 8/90 (8%)

Query: 320 ASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
           A  EG       L+M+ A      +  N    T LH A   GH DIV+ L+Q+  D+NA 
Sbjct: 46  ACREGRSAVVEMLIMRGA----RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV 101

Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +  G +PLH A       +   LV +GA +
Sbjct: 102 NEHGNVPLHYACFWGQDQVAEDLVANGALV 131

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 90.2 bits (225), Expect = 3e-21
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 7/93 (7%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           +     EG        +  T     D +  +D G + LH A   G   +V  L+  G  +
Sbjct: 9   IFTQCREGNAVAVRLWLDNTE---NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI 65

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           N  +     PLH AAS  +  +V+ L+++ A I
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI 98

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 89.8 bits (224), Expect = 3e-21
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+  G  ++V K   L++   D +A N+ G   LH A   G   +   LV  G  V+  +
Sbjct: 79  AASHGHRDIVQK---LLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICN 135

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
             G MP+  A +     +     + G  +    + D
Sbjct: 136 KYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 82.9 bits (206), Expect = 8e-19
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFG-CDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
            + E +  +      G+   VR  +     D+N  D  G+ PLH A      A+V  L+ 
Sbjct: 1   GSPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 401 HGACI 405
            GA I
Sbjct: 61  RGARI 65

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.0 bits (240), Expect = 1e-21
 Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 6/96 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+ EG  E+V   A L+    + +  N  G+T LH     GH  +   L++ G  V+
Sbjct: 249 LHLAAQEGHAEMV---ALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 305

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
           A    G+ PLH A+   N+ +V+FL++H A + A T
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.3 bits (238), Expect = 3e-21
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 7/103 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  AS  G L +V     L++    P+ +N +  T LH A  AGH ++ ++L+Q    VN
Sbjct: 18  LHVASFMGHLPIVK---NLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 74

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           A+  D   PLHCAA   +  MV+ L+E+ A     T     T 
Sbjct: 75  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT-AGHTP 116

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.9 bits (237), Expect = 4e-21
 Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A     L++V     L+     P +    G T LH A      ++ R L+Q+G   N
Sbjct: 183 LHVAVHHNNLDIVK---LLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSAN 239

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           A+   G  PLH AA   +  MV  L+   A  
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANG 271

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 27/92 (29%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+ EG +E V     L++     +    +G T LH A   G   +   L++     N
Sbjct: 117 LHIAAREGHVETV---LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN 173

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           A   +G  PLH A   NNL +V+ L+  G   
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.9 bits (232), Expect = 2e-20
 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G   +V     L++   +P+ A   G T LH A   GH + V  L++      
Sbjct: 84  LHCAARIGHTNMVKL---LLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA 140

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
                G+ PLH AA    + +   L+E  A  
Sbjct: 141 CMTKKGFTPLHVAAKYGKVRVAELLLERDAHP 172

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.9 bits (232), Expect = 2e-20
 Identities = 20/68 (29%), Positives = 33/68 (48%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
                 + G+T LH A   GH  IV+ L+Q G   N  +     PLH AA   +  + ++
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65

Query: 398 LVEHGACI 405
           L+++ A +
Sbjct: 66  LLQNKAKV 73

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.9 bits (232), Expect = 2e-20
 Identities = 37/132 (28%), Positives = 59/132 (44%), Gaps = 15/132 (11%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
            + EG +  V     L+K      A    G T LH A   G+  +V+FL+Q   DVNA+ 
Sbjct: 285 VAQEGHVP-VADV--LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKT 341

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA---AVKCEEDEEGFEGCSEF 433
             G+ PLH AA   +  +V  L+++GA     + SD  T    A +      G+   ++ 
Sbjct: 342 KLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS-SDGTTPLAIAKR-----LGYISVTDV 395

Query: 434 LYSVQEKLGILN 445
           L  V ++   + 
Sbjct: 396 LKVVTDETSFVL 407

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 92.2 bits (230), Expect = 3e-20
 Identities = 28/93 (30%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A+  G++     L+ + A     P+AA   G+T LH A+   + DIV+ L+  G   
Sbjct: 150 LHVAAKYGKVRVAELLLERDA----HPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           ++   +G+ PLH AA  N + + R L+++G   
Sbjct: 206 HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.2 bits (225), Expect = 1e-19
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G  E+      L++     +A   +  T LH A   GH ++V+ L++   + N
Sbjct: 51  LHMAARAGHTEVA---KYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPN 107

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
              + G  PLH AA   ++  V  L+E  A
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEA 137

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.5 bits (223), Expect = 2e-19
 Identities = 23/87 (26%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+ + ++E V ++  L++     +A + +G+T LH A   GH ++V  L+    + N  +
Sbjct: 219 AAKQNQVE-VARS--LLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 275

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
             G  PLH  A   ++ +   L++HG 
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKHGV 302

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 57.9 bits (141), Expect = 4e-09
 Identities = 13/48 (27%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           G         G  PLH A+   +L +V+ L++ GA    +     ET 
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSN-VKVETP 50

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 3e-08
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 18/93 (19%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQF---GC 370
           L  A+ +G  ++V     L+K    P+  + +G T L  A   G+  +   L        
Sbjct: 348 LHQAAQQGHTDIV---TLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404

Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
            V   D                  V  +++   
Sbjct: 405 FVLVSDKHRMSFPE---------TVDEILDVSE 428

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 88.8 bits (221), Expect = 1e-21
 Identities = 26/68 (38%), Positives = 35/68 (51%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
             +    L  A  AG  D VR L+  G DV A+D +G  PLH AA   +L +V+ L+E G
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG 80

Query: 403 ACIFATTH 410
           A + A   
Sbjct: 81  ADVXAQDK 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.6 bits (166), Expect = 3e-14
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           LL+A+  G+ + V +   L+    D +A +  G T LH A   GH ++V+ L++ G DV 
Sbjct: 28  LLEAARAGQDDEV-RI--LMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX 84

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFL 398
           AQD  G      +    N  +   L
Sbjct: 85  AQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 64.9 bits (159), Expect = 4e-13
 Identities = 13/49 (26%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 357 GHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
            H      LV  G  + +   D    L  AA       VR L+ +GA +
Sbjct: 5   HHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADV 50

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 89.4 bits (223), Expect = 2e-21
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 8/91 (8%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G++E V    +L++   DP+A N  G   +      G   +   L+  G + N
Sbjct: 16  LATAAARGQVETV---RQLLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPN 71

Query: 374 AQDSDGW-MPLHCAASCNNLAMVRFLVEHGA 403
             D      P+H AA    L  +  L   GA
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGA 102

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 87.5 bits (218), Expect = 7e-21
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
                       L  A   G  + VR L++ G D NA +  G  P+       +  +   
Sbjct: 4   GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAEL 62

Query: 398 LVEHGA 403
           L+ HGA
Sbjct: 63  LLLHGA 68

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 84.8 bits (211), Expect = 6e-20
 Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 1/67 (1%)

Query: 338 DPSAANDEGIT-ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
           +P+ A+   +T  +H+A   G  D +  L + G  ++  D+ G +P+  A    +  + R
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIAR 128

Query: 397 FLVEHGA 403
           +L     
Sbjct: 129 YLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 55.9 bits (136), Expect = 8e-10
 Identities = 9/35 (25%), Positives = 14/35 (40%)

Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
              ++         L  AA+   +  VR L+E GA
Sbjct: 2   SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGA 36

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.3 bits (111), Expect = 2e-06
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 6/58 (10%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
           + DA+ EG L+ +     L +        +  G   +  A   GH DI R+L     D
Sbjct: 82  VHDAAREGFLDTL---VVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 88.6 bits (221), Expect = 2e-21
 Identities = 33/90 (36%), Positives = 46/90 (51%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L +A+  G  E V K   L+    D +A + +G T LH A   GH +IV+ L+  G DVN
Sbjct: 13  LHNAAKNGHAEEV-KK--LLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN 69

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           A+  DG  P H A    +  +V+ L   GA
Sbjct: 70  ARSKDGNTPEHLAKKNGHHEIVKLLDAKGA 99

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 87.4 bits (218), Expect = 4e-21
 Identities = 26/62 (41%), Positives = 36/62 (58%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
            + +G T LHNA   GH + V+ L+  G DVNA+  DG  PLH AA   +  +V+ L+  
Sbjct: 5   GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 402 GA 403
           GA
Sbjct: 65  GA 66

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.4 bits (153), Expect = 3e-12
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+  G  E+V K   L+    D +A + +G T  H A   GH +IV+ L   G DVNA+ 
Sbjct: 49  AAKNGHAEIV-KL--LLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARS 105

Query: 377 SDGWMPLH 384
                  H
Sbjct: 106 WGSSHHHH 113

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 48.1 bits (116), Expect = 3e-07
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
                DG  PLH AA   +   V+ L+  GA +
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV 35

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 89.8 bits (224), Expect = 2e-21
 Identities = 23/97 (23%), Positives = 36/97 (37%), Gaps = 8/97 (8%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G +E V     L++   +P+A N  G   +      G   +   L+  G + N
Sbjct: 16  LATAAARGRVEEV---RALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPN 71

Query: 374 AQDSDGW-MPLHCAASCNNLAMVRFLVEHGACIFATT 409
             D      P+H AA    L  +  L   GA +    
Sbjct: 72  CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD 108

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 89.5 bits (223), Expect = 3e-21
 Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 338 DPSAANDEGIT-ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
           +P+ A+   +T  +H+A   G  D +  L + G  ++ +D+ G +P+  A    +  + R
Sbjct: 69  EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVAR 128

Query: 397 FLVEHGACIFATTHSDHETAA 417
           +L         + H     AA
Sbjct: 129 YLRAAAGGTRGSNH-ARIDAA 148

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 84.5 bits (210), Expect = 2e-19
 Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
               ++ +     L  A   G  + VR L++ G + NA +S G  P+       +  +  
Sbjct: 3   PAAGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM-GSARVAE 61

Query: 397 FLVEHGA 403
            L+ HGA
Sbjct: 62  LLLLHGA 68

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 11/82 (13%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           + DA+ EG L+ +     L +        +  G   +  A   GH D+ R+L        
Sbjct: 82  VHDAAREGFLDTL---VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138

Query: 374 AQDSDGWMPLHCAASCNNLAMV 395
             +          A+     + 
Sbjct: 139 GSN-----HARIDAAEGPSDIP 155

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 371 DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
              +        L  AA+   +  VR L+E GA  
Sbjct: 4   AAGSSMEPSADWLATAAARGRVEEVRALLEAGANP 38

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 93.3 bits (233), Expect = 2e-21
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 6/97 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           + +A++ G    + +   L+      +    + ++ LH A   GH   V+ L++ G  VN
Sbjct: 63  MHEAAIHGHQLSL-RN--LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTH 410
              +D   PL  A    +   V  L++HGA +   + 
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 13/136 (9%)

Query: 284 SDSNNQEIAEI---KSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPS 340
           S  ++   +     + +  +   GK+     D           G   L            
Sbjct: 3   SSHHHHHHSSGLVPRGSHMASMDGKQG--GMDGSKPAGPRDFPGIRLLS-------NPLM 53

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
                  + +H A   GH   +R L+  G  VN   +D   PLH A    +L+ V+ L++
Sbjct: 54  GDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLK 113

Query: 401 HGACIFATTHSDHETA 416
           HGA +   T +D  T 
Sbjct: 114 HGAQVNGVT-ADWHTP 128

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 17/64 (26%), Positives = 31/64 (48%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
              +  + +H A   GH + V  L+ +G +++ + S    PL+ A      A V+ L+E 
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLES 212

Query: 402 GACI 405
           GA +
Sbjct: 213 GADV 216

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 82.5 bits (205), Expect = 1e-17
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 7/92 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           + +A+  G +E  + +  L+    +         T L+ A        V+ L++ G DVN
Sbjct: 161 IHEAARRGHVE-CVNS--LIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
            Q      PLH      +  +   L++ GA  
Sbjct: 218 -QGKGQDSPLHAVVRTASEELACLLMDFGADT 248

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 79.8 bits (198), Expect = 7e-17
 Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
                 + LH  +     ++   L+ FG D  A++++G  P+      + LA + FL   
Sbjct: 218 QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLERE 276

Query: 402 GACI 405
           GA +
Sbjct: 277 GASL 280

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 17/95 (17%), Positives = 25/95 (26%), Gaps = 32/95 (33%)

Query: 353 AICAGHFDIVRFLVQFGCDVNAQDS-----DGWMPL------------------------ 383
                H      LV  G  + + D      DG  P                         
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 384 --HCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
             H AA   +   +R L+  G  +   T +DH + 
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIIT-ADHVSP 95

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 2e-21
 Identities = 26/68 (38%), Positives = 37/68 (54%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D  A +  G+  LHNA   GH+++   L++ G  VNA D   + PLH AAS N + +   
Sbjct: 83  DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL 142

Query: 398 LVEHGACI 405
           L+ HGA  
Sbjct: 143 LLSHGADP 150

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 94.5 bits (236), Expect = 2e-21
 Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 5/92 (5%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           LL+A+  G  E +M    L     +  A++    T LH A       IV+ L+Q G DV+
Sbjct: 28  LLEAARSGNEEKLMAL--LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH 85

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           A+D  G +PLH A S  +  +   L++HGAC+
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLLKHGACV 117

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 90.6 bits (226), Expect = 5e-20
 Identities = 24/79 (30%), Positives = 37/79 (46%), Gaps = 1/79 (1%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           + +  N + +T LH A    H D++  L + G  +NA DS G   LH AA   +L   R 
Sbjct: 239 NVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRL 298

Query: 398 LVEHGACIFATTHSDHETA 416
           L+ +G+     +     TA
Sbjct: 299 LLSYGSDPSIISL-QGFTA 316

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 85.6 bits (213), Expect = 2e-18
 Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 3/92 (3%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHF---DIVRFLVQFGCDVN 373
           LL A+ E +L  V KT  L            TALH A+ + H     +   L++ G +VN
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
            ++ D   PLH AA   +  ++  L +HGA +
Sbjct: 242 EKNKDFMTPLHVAAERAHNDVMEVLHKHGAKM 273

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.9 bits (211), Expect = 4e-18
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 13/118 (11%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A   G  E+  +   L+K     +A +    T LH A      ++   L+  G D    +
Sbjct: 98  ACSYGHYEVT-EL--LLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA-------AVKCEEDEEGF 427
             G   +  A +      + +  +  + + A   +D            +  ++ +   
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHE 212

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.2 bits (204), Expect = 3e-17
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 5/80 (6%)

Query: 331 KTARLVKDPSA----ANDEGITALHNAICAGHFD-IVRFLVQFGCDVNAQDSDGWMPLHC 385
           K+A  + DPSA      +     L  A  +G+ + ++  L     + +A D     PLH 
Sbjct: 5   KSALDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHL 64

Query: 386 AASCNNLAMVRFLVEHGACI 405
           AA  N + +V+ L++HGA +
Sbjct: 65  AAGYNRVRIVQLLLQHGADV 84

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.3 bits (181), Expect = 2e-14
 Identities = 21/87 (24%), Positives = 33/87 (37%), Gaps = 11/87 (12%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+     + VM+   L K     +A +  G TALH A  AGH    R L+ +G D +   
Sbjct: 254 AAERAHND-VMEV--LHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
             G+              V+ ++    
Sbjct: 311 LQGFTAAQMGNEA-----VQQILSEST 332

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 54.4 bits (132), Expect = 3e-08
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 13/75 (17%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+L G L+   +   L+    DPS  + +G TA          + V+ ++     +   D
Sbjct: 287 AALAGHLQTC-RL--LLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSD 338

Query: 377 SDGWMPLHCAASCNN 391
            D    L  A+   +
Sbjct: 339 VDY--RLLEASKAGD 351

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 92.9 bits (232), Expect = 3e-21
 Identities = 19/66 (28%), Positives = 28/66 (42%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           DP      G T    A  AG   +++  +  G DVN  D  G+     AA    +  ++F
Sbjct: 64  DPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF 123

Query: 398 LVEHGA 403
           L + GA
Sbjct: 124 LYKRGA 129

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.5 bits (218), Expect = 2e-19
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLHCAASCNNLAMVRFLVE 400
           A  E    L  A+     D+V+ L++ G +VN Q+ + GW PLH A   +   +V  L+ 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 401 HGACIFATTHSDHETA 416
           HGA        +  T 
Sbjct: 61  HGADPVLRK-KNGATP 75

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.4 bits (215), Expect = 4e-19
 Identities = 18/61 (29%), Positives = 30/61 (49%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
            + G T LHNA+     DIV  L++ G D   +  +G  P   AA   ++ +++  +  G
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKG 95

Query: 403 A 403
           A
Sbjct: 96  A 96

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 86.0 bits (214), Expect = 7e-19
 Identities = 24/94 (25%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 317 LLDASLEGELELVMKTAR-LVK---DPSAANDEGITALHNAICAGHFDIVRFLV-QFGCD 371
           L+ A L  +   V      L+    D +   + G T L  A+   H  +V+ L+ Q   +
Sbjct: 186 LIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE 245

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +N  DSDG   L  A       +   L + GA  
Sbjct: 246 INDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.4 bits (197), Expect = 1e-16
 Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 12/98 (12%)

Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFD----IVRFLVQF 368
           L+DA+ +G +E++     L+     D +A ++ G  AL +A+ +        I   L+  
Sbjct: 152 LMDAAEKGHVEVL---KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH-GACI 405
           G DVN +   G  PL  A    +L +V+ L+E     I
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEI 246

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 74.8 bits (185), Expect = 4e-15
 Identities = 23/102 (22%), Positives = 42/102 (41%), Gaps = 19/102 (18%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
            L A++ G ++     + K A    D +  +  G TA   A   G    ++FL + G +V
Sbjct: 76  FLLAAIAGSVKLLKLFLSKGA----DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANV 131

Query: 373 NAQD----------SDGWMPLHCAASCNNLAMVRFLVEH-GA 403
           N +             G   L  AA   ++ +++ L++  GA
Sbjct: 132 NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 49.0 bits (118), Expect = 1e-06
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L+ A  +  L LV    RL++    + +  + +G TAL  A+      I   L + G   
Sbjct: 223 LILAVEKKHLGLV---QRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST 279

Query: 373 NAQD 376
           +  D
Sbjct: 280 DCGD 283

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 89.0 bits (222), Expect = 6e-21
 Identities = 34/93 (36%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           LL+A+  G  +    L+   A    D +A +  G T LH A   GH +IV  L++ G DV
Sbjct: 18  LLEAARAGRDDEVRILMANGA----DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           NA D  G  PL  AA   +L +V  L+++GA +
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV 106

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 35/90 (38%), Positives = 52/90 (57%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+  G LE +++   L+K   D +A +  G+T L  A   GH +IV  L++ G DVN
Sbjct: 51  LHLAAFNGHLE-IVEV--LLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           A D +G  PLH AA   +L +V  L+++GA
Sbjct: 108 ANDMEGHTPLHLAAMFGHLEIVEVLLKNGA 137

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 83.2 bits (207), Expect = 6e-19
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+L G LE+V +   L+K   D +A + EG T LH A   GH +IV  L++ G DVN
Sbjct: 84  LRLAALFGHLEIV-EV--LLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN 140

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEH 401
           AQD  G      +    N  +   L + 
Sbjct: 141 AQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 82.8 bits (206), Expect = 8e-19
 Identities = 26/63 (41%), Positives = 36/63 (57%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
             +    L  A  AG  D VR L+  G DVNA+D+ GW PLH AA   +L +V  L+++G
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70

Query: 403 ACI 405
           A +
Sbjct: 71  ADV 73

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 49.7 bits (120), Expect = 3e-07
 Identities = 11/36 (30%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 369 GCDVN-AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           G   +    SD    L  AA       VR L+ +GA
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGA 38

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 88.6 bits (221), Expect = 6e-21
 Identities = 26/66 (39%), Positives = 41/66 (62%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +P   +  G   +H+A  AG  D ++ L++F  DVN +D++G +PLH AA   +L +V F
Sbjct: 62  NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121

Query: 398 LVEHGA 403
           LV+H A
Sbjct: 122 LVKHTA 127

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 84.7 bits (211), Expect = 2e-19
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 9/91 (9%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A+  G+LE    L+        + +A N  G TAL      G+ +I R L+  G + 
Sbjct: 9   LASAAARGDLEQLTSLLQNNV----NVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANP 63

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           + +D  G+  +H AA    L  ++ L+E  A
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQA 94

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 83.2 bits (207), Expect = 4e-19
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDV 372
           + DA+  G L+ + +T  L++   D +  ++EG   LH A   GH  +V FLV+    +V
Sbjct: 74  IHDAARAGFLDTL-QT--LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV 130

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
             ++  G      A       +V  +  +GA
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 80.9 bits (201), Expect = 3e-18
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
            +     L +A   G  + +  L+Q   +VNAQ+  G   L       N  + R L+  G
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG 60

Query: 403 ACI 405
           A  
Sbjct: 61  ANP 63

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 89.4 bits (223), Expect = 7e-21
 Identities = 20/92 (21%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 315 ALLLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
           ALL  A+     ++      L          + EG T L+ A+     +I + L+  G D
Sbjct: 8   ALLEAANQRDTKKVK---EILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD 64

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           +N Q+S    P   A +     ++ ++++H  
Sbjct: 65  INLQNSISDSPYLYAGAQGRTEILAYMLKHAT 96

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 84.4 bits (210), Expect = 5e-19
 Identities = 14/61 (22%), Positives = 25/61 (40%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
             E    L  A       +   L      V+  D++G  PL+ A   N++ + + L++ G
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG 62

Query: 403 A 403
           A
Sbjct: 63  A 63

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.1 bits (204), Expect = 3e-18
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG-CD 371
           L  A    ++E    L+ + A    D +  N    +    A   G  +I+ ++++    D
Sbjct: 43  LNIAVHNNDIEIAKALIDRGA----DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD 98

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA---AVKCEEDEEGFE 428
           +N  +  G   L  AA   ++  V+ L+E G       +    TA   AV   E  + ++
Sbjct: 99  LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQ 158

Query: 429 GCSEFLYS 436
              + L  
Sbjct: 159 DIVKLLME 166

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 79.4 bits (197), Expect = 2e-17
 Identities = 22/95 (23%), Positives = 42/95 (44%), Gaps = 14/95 (14%)

Query: 317 LLDASLEGELELVMKTARL-----VKDPSAANDEGITALHNAICA-----GHFDIVRFLV 366
           L+ A+ +G ++      +L      +D    ND G TAL  A+        + DIV+ L+
Sbjct: 110 LIPAAEKGHID----NVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM 165

Query: 367 QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
           + G D + +D+ G   +  A       + + L ++
Sbjct: 166 ENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.4 bits (101), Expect = 1e-04
 Identities = 3/31 (9%), Positives = 9/31 (29%)

Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +  +    L  A   +   +   L +    +
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQV 32

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 85.5 bits (212), Expect = 8e-21
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRV 507
            +A+Y ++A N +ELS    + + +L   D     EWW +++N K+GYVP N +      
Sbjct: 16  YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG 75

Query: 508 QPS 510
             S
Sbjct: 76  PSS 78

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.0 bits (232), Expect = 8e-21
 Identities = 17/68 (25%), Positives = 28/68 (41%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +   ++DE +  +H A   G  D VR L++ G     Q+  G   LH A     +   ++
Sbjct: 12  NRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKY 71

Query: 398 LVEHGACI 405
           L   G   
Sbjct: 72  LASVGEVH 79

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 90.7 bits (226), Expect = 4e-20
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 5/102 (4%)

Query: 317 LLDASLEGELELV---MKTARLVK--DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD 371
           L+ A      E +   M T           AN +G + LH AI     D+    V+ G D
Sbjct: 177 LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGID 236

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
           VN +D++  +PL+ +     + + + L++            H
Sbjct: 237 VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.8 bits (208), Expect = 9e-18
 Identities = 7/69 (10%), Positives = 19/69 (27%)

Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
                     +  +  A      ++++ L +   +V    + G             A+ R
Sbjct: 281 TTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKR 340

Query: 397 FLVEHGACI 405
             +   A +
Sbjct: 341 MKLAPSAPV 349

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 8/90 (8%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           +  A+ +G+ + V    RL++    P+  N  G TALH A   G  D  ++L   G   +
Sbjct: 24  IHVAARKGQTDEV---RRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
                G  P+H A   N   +V  LVE   
Sbjct: 81  LW--HGQKPIHLAVMANKTDLVVALVEGAK 108

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 79.5 bits (197), Expect = 3e-16
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 13/96 (13%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAG--HFDIVRFLVQFGCDVNA 374
               +   E E+              + +G TALH  +  G  + ++++ LVQ G    A
Sbjct: 115 ESLLNECDEREVNEI------GSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA 168

Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVE-----HGACI 405
           +D     PL  A    N   +  +++         +
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.1 bits (183), Expect = 2e-14
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 19/102 (18%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQ--------- 367
           A L    ++ M   R V+   D +  ++E    L+ ++ A    + + L+Q         
Sbjct: 218 AILINWEDVAM---RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274

Query: 368 ----FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
                G  V          +  AA  +   +++ L E    +
Sbjct: 275 CPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEV 316

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 59.9 bits (146), Expect = 6e-10
 Identities = 3/49 (6%), Positives = 10/49 (20%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCA 386
           +   + + G              + R  +     V  +          +
Sbjct: 315 EVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 5e-09
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
             +    D +    +H AA       VR L+E G   
Sbjct: 10  KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP 46

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.2 bits (126), Expect = 2e-07
 Identities = 13/78 (16%), Positives = 21/78 (26%), Gaps = 16/78 (20%)

Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE---- 400
            G   +H A+ A   D+V  LV+           G MP      C+   +          
Sbjct: 83  HGQKPIHLAVMANKTDLVVALVEGA------KERGQMPESLLNECDEREVNEIGSHVKHC 136

Query: 401 ------HGACIFATTHSD 412
                 H        + +
Sbjct: 137 KGQTALHWCVGLGPEYLE 154

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 90.6 bits (226), Expect = 8e-21
 Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 5/94 (5%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
              A           L+   A    D  A N +G+TALH A+     + V+ L++ G D+
Sbjct: 83  AHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI 142

Query: 373 NAQDS-DGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +A D   G  PL  A   N+L+MV+ L++HGA +
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANV 176

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 86.0 bits (214), Expect = 3e-19
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 4/83 (4%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFG----CDVNAQDSDGWMPLHCAASCNNLA 393
            P A +  G TA H A        +R L+        D+ A++ DG   LH A +     
Sbjct: 71  SPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE 130

Query: 394 MVRFLVEHGACIFATTHSDHETA 416
            V+ L+E GA I A       + 
Sbjct: 131 TVQLLLERGADIDAVDIKSGRSP 153

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 85.6 bits (213), Expect = 4e-19
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQF----GCDVNAQDSDGWMPLHCAASCNNLAMVR 396
            A+++G T LH A+  G+   V  LV      G +++  ++    PLH A      ++VR
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 397 FLVEHGACI 405
            LV  GA  
Sbjct: 64  LLVTAGASP 72

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 85.2 bits (212), Expect = 6e-19
 Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L+ A     L     L+   A    + +A    G +ALH+A   G   +VR LV+ G D 
Sbjct: 154 LIHAVENNSLSMVQLLLQHGA----NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADS 209

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           + ++     PL  A S   + ++R      A
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.8 bits (211), Expect = 7e-19
 Identities = 18/66 (27%), Positives = 26/66 (39%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +    N+   T LH A+      +VR LV  G    A D  G    H A    +   +R 
Sbjct: 38  ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRA 97

Query: 398 LVEHGA 403
           L++  A
Sbjct: 98  LLDSAA 103

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.4 bits (210), Expect = 9e-19
 Identities = 22/61 (36%), Positives = 31/61 (50%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
              G + L +A+      +V+ L+Q G +VNAQ   G   LH A+    L +VR LV  G
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG 206

Query: 403 A 403
           A
Sbjct: 207 A 207

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 14/49 (28%), Positives = 17/49 (34%), Gaps = 5/49 (10%)

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVE----HGACIFATTHSDHETA 416
               D DG  PLH A    NL  V  LV      G  +    +   +T 
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN-LRQTP 49

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 90.4 bits (225), Expect = 9e-21
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 317 LLDASLEGELELVMKTARLVKDPSA-ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
            L    +G               +A    E  T    A        +  L++   DV+A 
Sbjct: 19  YLIEWKDGHSPSW----VPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAV 73

Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           D +G   L   A   +   VR L E GA +         TA
Sbjct: 74  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA 114

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 83.0 bits (206), Expect = 3e-18
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDE-GITALHNAICAGHFDIVRFLVQFGCDV 372
           LL  +  G  + V     L +   D    +   G+TALH A      ++V  LV+ G D+
Sbjct: 81  LLFVAGLGSDKCVRL---LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 137

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
             +D  G   L  A            ++ G  I
Sbjct: 138 EVEDERGLTALELAREILKTTPKGNPMQFGRRI 170

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 67.6 bits (166), Expect = 6e-13
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 6/75 (8%)

Query: 331 KTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
           +  +++   S    EG          GH            DV +   +   P   AA   
Sbjct: 2   EVNKIIG--SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKA 56

Query: 391 NLAMVRFLVEHGACI 405
           +   +  L+     +
Sbjct: 57  DEQALSQLL-EDRDV 70

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 15/101 (14%), Positives = 24/101 (23%), Gaps = 25/101 (24%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDS-------------------- 377
           D    ++ G+TAL  A            +QFG  +  +                      
Sbjct: 136 DIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEK 195

Query: 378 --DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
              G    +     +          H A   A    D+E  
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVA---KDYEDG 233

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 8/72 (11%), Positives = 19/72 (26%), Gaps = 10/72 (13%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           +L+  +    E+         +      +G    +        D          +  A+D
Sbjct: 178 VLEGQVFEYAEVD--------EIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD 229

Query: 377 SDGWMPLHCAAS 388
            +    L  A +
Sbjct: 230 YED--GLEYAVA 239

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 88.7 bits (221), Expect = 1e-20
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 6/101 (5%)

Query: 317 LLDASLEGELELVMKTARLVKDPSA-ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
            L    +G               +A    E  T    A        +  L++   DV+A 
Sbjct: 18  YLIEWKDGHSPSW----VPSSYIAADVVSEYETPWWTAARKADEQALSQLLE-DRDVDAV 72

Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           D +G   L   A   +   VR L E GA +         TA
Sbjct: 73  DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA 113

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 82.9 bits (206), Expect = 1e-18
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDE-GITALHNAICAGHFDIVRFLVQFGCDV 372
           LL  +  G  + V     L +   D    +   G+TALH A      ++V  LV+ G D+
Sbjct: 80  LLFVAGLGSDKCV---RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADI 136

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
             +D  G   L  A            ++ G  I
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFGRRI 169

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.9 bits (167), Expect = 2e-13
 Identities = 11/66 (16%), Positives = 17/66 (25%), Gaps = 4/66 (6%)

Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
           S    EG          GH            DV +   +   P   AA   +   +  L+
Sbjct: 8   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL 64

Query: 400 EHGACI 405
                +
Sbjct: 65  -EDRDV 69

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 42.5 bits (101), Expect = 7e-05
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+     E+V     LV+   D    ++ G+TAL  A            +QFG  + 
Sbjct: 114 LHMAAGYVRPEVV---EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170

Query: 374 AQD 376
            + 
Sbjct: 171 LEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 3/32 (9%), Positives = 6/32 (18%)

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
            +    +G M         +           A
Sbjct: 7   GSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA 38

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.2 bits (225), Expect = 1e-20
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 8/91 (8%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           ++ A+    ++    L+ K +    D +  ++E    LH A  +G  DI   L+   CD+
Sbjct: 115 MIWATEYKHVDLVKLLLSKGS----DINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           +A +  G  PLH AA  N    V   +   +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDS 201

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 89.8 bits (224), Expect = 1e-20
 Identities = 23/68 (33%), Positives = 35/68 (51%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +    +    + LH A  AGH DI   LVQ G +++    D   PL  AA  N+L  V++
Sbjct: 3   NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKY 62

Query: 398 LVEHGACI 405
           L++ GA +
Sbjct: 63  LIKAGALV 70

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 89.4 bits (223), Expect = 2e-20
 Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 6/87 (6%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           A+  G +++      LV+   +    +++  T L  A    H + V++L++ G  V+ +D
Sbjct: 18  AAEAGHVDICHM---LVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKD 74

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
           ++G   LH AA   +  +V++L+ +G 
Sbjct: 75  AEGSTCLHLAAKKGHYEVVQYLLSNGQ 101

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.9 bits (219), Expect = 7e-20
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A+ +G  E    L+        D +  +D G T +  A    H D+V+ L+  G D+
Sbjct: 81  LHLAAKKGHYEVVQYLLSNGQ---MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI 137

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           N +D++  + LH AA    + +   L+     +
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCDL 170

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 82.1 bits (204), Expect = 6e-18
 Identities = 20/91 (21%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A+  G ++    L+        D  A N  G + LH A     +D V   +    DV
Sbjct: 148 LHWAAFSGCVDIAEILLAAKC----DLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDV 203

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
             ++ +G  PL CA+  + +     + +   
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 89.4 bits (223), Expect = 1e-20
 Identities = 21/66 (31%), Positives = 36/66 (54%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +   ++G+T LH A+    F++ +FL++ G  V  +D    +PLH AAS  +L ++  
Sbjct: 99  DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158

Query: 398 LVEHGA 403
           L   G 
Sbjct: 159 LCGLGK 164

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 82.1 bits (204), Expect = 4e-18
 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 336 VKDPSAANDEGITALHNAICAGHFDIVRFLVQ--FGCDVNAQDSDGWMPLHCAASCNNLA 393
           V      +D G T  H A   G+ ++V+ L       D+N   + G   LH A       
Sbjct: 62  VNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFE 121

Query: 394 MVRFLVEHGACI 405
           + +FL+E+GA +
Sbjct: 122 VSQFLIENGASV 133

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 82.1 bits (204), Expect = 5e-18
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 8/93 (8%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A +E E   V +   L          + +G   LH ++     +I  FL+    +VN
Sbjct: 6   LHQACMENEFFKVQEL--LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63

Query: 374 AQDS---DGWMPLHCAASCNNLAMVRFLVEHGA 403
             D     GW P H A S  NL +V+ L +   
Sbjct: 64  LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPL 96

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 79.0 bits (196), Expect = 6e-17
 Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 11/103 (10%)

Query: 320 ASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDVNA 374
           A  +   E    L+   A         +      LH A   G   ++  L   G   VN 
Sbjct: 114 AVGKKWFEVSQFLIENGA----SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

Query: 375 QDSDGWMPLHCAASCNNLAMVRFLVE-HGACIFATTHSDHETA 416
           QD  GW PL  A +  +      LVE +GA      +     A
Sbjct: 170 QDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN-KGAKA 211

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.3 bits (194), Expect = 1e-16
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 346 GITALHNAICAGHFDIVR-FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
               LH A     F  V+  L      +  +D DG +PLH + S     +  FL+    
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 68.6 bits (169), Expect = 2e-13
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
             +  + +G T L +A+  GH D    LV ++G + +  D+ G      A    N  + +
Sbjct: 166 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKK 222

Query: 397 FLVEH 401
           F + +
Sbjct: 223 FFLNN 227

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 89.4 bits (223), Expect = 2e-20
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             +D     +  A   G ++  R LV+ G DV   D +    LH AA  N + +V++ + 
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYIS 63

Query: 401 HGA 403
            GA
Sbjct: 64  KGA 66

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 88.6 bits (221), Expect = 3e-20
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           ++ A+  G  E       LV+   D    + E +T LH A      D+V++ +  G  V+
Sbjct: 13  IVKATQYGIYERC---RELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD 69

Query: 374 AQDSD-GWMPLHCAASCNNLAMVRFLVEHGA 403
               D    PLH A    +L+MV  L+++GA
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGA 100

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 88.3 bits (220), Expect = 5e-20
 Identities = 19/64 (29%), Positives = 31/64 (48%)

Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
               D   T LH A   GH  +V  L+++G D +  D +G   +H AA   + ++V +L+
Sbjct: 70  QLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 400 EHGA 403
             G 
Sbjct: 130 AKGQ 133

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 86.7 bits (216), Expect = 2e-19
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 7/104 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+ +G L  ++    L+K   DPS  + EG + +H A   GH  IV +L+  G DV+
Sbjct: 80  LHWATRQGHLS-MVVQ--LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136

Query: 374 AQDSDGWMPLHCAASCNN-LAMVRFLVEHGACIFATTHSDHETA 416
             D +G  PL  AA   + +   R L+     +         TA
Sbjct: 137 MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTA 180

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 85.6 bits (213), Expect = 4e-19
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
                TALH A+ AG+  ++  L++ G +V+AQ+  G   L  A    N+ M+  L E  
Sbjct: 174 KYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR 233

Query: 403 A 403
            
Sbjct: 234 Q 234

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 82.1 bits (204), Expect = 6e-18
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGH-FDIVRFLVQFGCDV 372
           +  A+  G   +V   A L+    D    +  G+T L  A    H  D  R L+ F   V
Sbjct: 113 IHLAAQFGHTSIV---AYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSV 169

Query: 373 NAQD-SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           N  D       LH A    N  ++  L+E GA + A      E+A
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI-KGESA 213

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 7/32 (21%), Positives = 9/32 (28%)

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           +   D      +  A         R LVE G 
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGY 33

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 42.8 bits (102), Expect = 1e-04
 Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 8/64 (12%)

Query: 317 LLDASLEGELE----LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A L G       L+   A    +  A N +G +AL  A    +  ++  L +     
Sbjct: 181 LHWAVLAGNTTVISLLLEAGA----NVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236

Query: 373 NAQD 376
              +
Sbjct: 237 GYDN 240

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 12/94 (12%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
              G T LH A+ A    ++  L++ G D  A+   G  PL  A    N  + R L  HG
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG 248

Query: 403 ACI------------FATTHSDHETAAVKCEEDE 424
           A               + + SD +      E D+
Sbjct: 249 APEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYDD 282

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 89.1 bits (222), Expect = 6e-20
 Identities = 18/63 (28%), Positives = 21/63 (33%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             ND G TALH A   G    V  L   G  V   +  G   LH A           L++
Sbjct: 40  LQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ 99

Query: 401 HGA 403
              
Sbjct: 100 PRP 102

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 86.8 bits (216), Expect = 3e-19
 Identities = 26/136 (19%), Positives = 43/136 (31%), Gaps = 17/136 (12%)

Query: 284 SDSNNQEIAEI----------KSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTA 333
                   A +           ++       +            +D+    E E      
Sbjct: 86  CRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEP--- 142

Query: 334 RLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLHCAASC 389
           R         A N +G T LH A+     ++VR L   G D+N  +   G  PLH A   
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA 202

Query: 390 NNLAMVRFLVEHGACI 405
              +++  L++ GA  
Sbjct: 203 QAASVLELLLKAGADP 218

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 86.4 bits (215), Expect = 4e-19
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCD---VNAQDSDGWMPLHCAASCNNLAMVRF 397
              ++G TALH A+   H   + FL+ F      ++ Q+  G   LH AA     + V  
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 398 LVEHGA 403
           L   GA
Sbjct: 64  LYAAGA 69

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 8e-15
 Identities = 15/76 (19%), Positives = 27/76 (35%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             +     A  ++      +       +   + A++ DG  PLH A    +  MVR L +
Sbjct: 120 TPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRD 179

Query: 401 HGACIFATTHSDHETA 416
            GA +     +   T 
Sbjct: 180 AGADLNKPEPTCGRTP 195

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 72.2 bits (178), Expect = 3e-14
 Identities = 14/65 (21%), Positives = 23/65 (35%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           DP+A    G T L +A+   +  + R L   G        D   P   + S ++      
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDE 276

Query: 398 LVEHG 402
             E+ 
Sbjct: 277 GDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.2 bits (152), Expect = 7e-11
 Identities = 20/106 (18%), Positives = 28/106 (26%), Gaps = 20/106 (18%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A++ GE   V K   L         A   G TALH A           L+Q      
Sbjct: 49  LHLAAILGEASTVEK---LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHP 105

Query: 374 AQDSDGWM-------------PLHCAASCNNLA-MVRFLVEHGACI 405
              SD ++             P    +  N          +    +
Sbjct: 106 RDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQL 151

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 48.7 bits (117), Expect = 1e-06
 Identities = 8/32 (25%), Positives = 11/32 (34%)

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
                 DG   LH A    +   + FL+   A
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSA 33

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 88.6 bits (221), Expect = 2e-20
 Identities = 21/79 (26%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +A +D G +ALH A    + D    L++ G + + Q++    PL  AA   +    + 
Sbjct: 117 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 176

Query: 398 LVEHGACIFATTHSDHETA 416
           L++H A    T H      
Sbjct: 177 LLDHFANRDITDH-MDRLP 194

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.9 bits (214), Expect = 2e-19
 Identities = 14/73 (19%), Positives = 26/73 (35%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +    N+   T L  A   G ++  + L+    + +  D    +P   A    +  +VR 
Sbjct: 150 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 209

Query: 398 LVEHGACIFATTH 410
           L E+        H
Sbjct: 210 LDEYNLVRSPQLH 222

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 85.5 bits (213), Expect = 3e-19
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             +  G TALH A      D  + L++   D N QD+ G  PLH A S +   + + L+ 
Sbjct: 20  QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 79

Query: 401 HGA 403
           + A
Sbjct: 80  NRA 82

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 84.8 bits (211), Expect = 6e-19
 Identities = 22/69 (31%), Positives = 31/69 (44%)

Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
            D  A   +G T L  A       ++  L+    DVNA D  G   LH AA+ NN+    
Sbjct: 83  TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 142

Query: 397 FLVEHGACI 405
            L+++GA  
Sbjct: 143 VLLKNGANK 151

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 81.7 bits (203), Expect = 7e-18
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDVNAQDSDGWMPLHCAASCNNLAMVR 396
           D +  ++ G T LH A+ A    + + L++    D++A+  DG  PL  AA      M+ 
Sbjct: 50  DANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE 109

Query: 397 FLVEHGA 403
            L+   A
Sbjct: 110 DLINSHA 116

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.4 bits (153), Expect = 2e-11
 Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 356 AGHFDIVRFLVQFGCDV-NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
                ++   +  G  + N  D  G   LH AA  +     + L+E  A  
Sbjct: 1   GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA 51

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 88.1 bits (219), Expect = 4e-20
 Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 6/90 (6%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
               + +G   L+          +   +     LH A   G+   +R  +     VN  D
Sbjct: 49  WWKGTSKGRTGLIPSN-----YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLD 103

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEH-GACI 405
             G   L+ A    +  +V  L       +
Sbjct: 104 KAGSTALYWACHGGHKDIVEMLFTQPNIEL 133

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 84.6 bits (210), Expect = 7e-19
 Identities = 16/76 (21%), Positives = 33/76 (43%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           + +  N  G TALH A   G+ DIV+ L+  G   + ++ +  +    A +    ++++ 
Sbjct: 132 ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKK 191

Query: 398 LVEHGACIFATTHSDH 413
                A    +   D+
Sbjct: 192 KQGTDAVRTLSNAEDY 207

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 76.1 bits (188), Expect = 5e-16
 Identities = 16/87 (18%), Positives = 25/87 (28%), Gaps = 5/87 (5%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           +  A    E     +      D     D   T        G   ++         V  Q 
Sbjct: 16  VFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSN-----YVAEQA 70

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
                PLH AA   NL+ +R  +++  
Sbjct: 71  ESIDNPLHEAAKRGNLSWLRECLDNRV 97

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 6/78 (7%), Positives = 13/78 (16%), Gaps = 6/78 (7%)

Query: 339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
           P      G   +  A+          L     D+               S     ++   
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLI--- 61

Query: 399 VEHGACIFATTHSDHETA 416
                 +        +  
Sbjct: 62  --PSNYVAEQAE-SIDNP 76

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 61.5 bits (150), Expect = 6e-11
 Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A+ +G  ++V     L+         N E   A   A  A    +++          
Sbjct: 144 LHAAAWKGYADIV---QLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200

Query: 374 AQDSDGWMPLHCAA 387
             +++ ++    + 
Sbjct: 201 LSNAEDYLDDEDSD 214

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 85.5 bits (213), Expect = 6e-20
 Identities = 24/66 (36%), Positives = 33/66 (50%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
              A      T LH A   GH +IV  L++ G DVNA+D      LH A   N+  +V  
Sbjct: 59  SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118

Query: 398 LVEHGA 403
           L+++GA
Sbjct: 119 LIKYGA 124

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 21/65 (32%), Positives = 32/65 (49%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             +  G + LH A   GHF     L++ G   +A+      PLH AAS  +  +V  L++
Sbjct: 29  TTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLK 88

Query: 401 HGACI 405
           HGA +
Sbjct: 89  HGADV 93

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 75.1 bits (186), Expect = 3e-16
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +A +   +TALH A    H ++V  L+++G DV+ Q          +    N  +   
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

Query: 398 L 398
           L
Sbjct: 152 L 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 73.2 bits (181), Expect = 1e-15
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           +    L  A  AG  D VR L+  G      D  G  PLH AA   + +    L+  G 
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 9/28 (32%), Positives = 11/28 (39%)

Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACI 405
           D    L  AA       VR L+ +GA  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPF 28

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 85.9 bits (214), Expect = 6e-20
 Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 7/93 (7%)

Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           LL+A+  G++E V    +L      +         T LH A       +V +L+Q G DV
Sbjct: 12  LLEAAKAGDVETV---KKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           +A+D  G +PLH A S  +  +   LV+HGA +
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV 101

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 84.7 bits (211), Expect = 1e-19
 Identities = 24/66 (36%), Positives = 36/66 (54%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D  A +  G+  LHNA   GH+++   LV+ G  VN  D   + PLH AA+     + + 
Sbjct: 67  DVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKL 126

Query: 398 LVEHGA 403
           L++HGA
Sbjct: 127 LLQHGA 132

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 80.5 bits (200), Expect = 5e-18
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
             + A+    T LH A   G ++I + L+Q G D   ++ DG  PL       +  +   
Sbjct: 100 VVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDL 158

Query: 398 LVEHGA 403
           L    A
Sbjct: 159 LRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 79.0 bits (196), Expect = 2e-17
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQF-GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
           N E    L  A  AG  + V+ L      +    +     PLH AA  N +++V +L++H
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH 64

Query: 402 GACI 405
           GA +
Sbjct: 65  GADV 68

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 42.4 bits (101), Expect = 8e-05
 Identities = 7/35 (20%), Positives = 13/35 (37%), Gaps = 3/35 (8%)

Query: 369 GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           G   N+   +    L  AA   ++  V+ L    +
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQS 32

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 84.7 bits (211), Expect = 7e-20
 Identities = 28/68 (41%), Positives = 43/68 (63%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +A ++ G+T L+ A   GH +IV  L++ G DVNA D+ G+ PLH AA   +L +   
Sbjct: 39  DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEV 98

Query: 398 LVEHGACI 405
           L++HGA +
Sbjct: 99  LLKHGADV 106

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 78.2 bits (194), Expect = 1e-17
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
             L  A  AG  D VR L+  G DVNA+D  G  PL+ A +  +L +V  L+++GA +
Sbjct: 16  KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV 73

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 77.4 bits (192), Expect = 2e-17
 Identities = 21/64 (32%), Positives = 29/64 (45%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +A +  G T LH A   GH +I   L++ G DVNAQD  G      +    N  +   
Sbjct: 72  DVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131

Query: 398 LVEH 401
           L + 
Sbjct: 132 LQKL 135

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 44.7 bits (107), Expect = 6e-06
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 1/38 (2%)

Query: 369 GCDVN-AQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           G   +    SD    L  AA       VR L+ +GA +
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADV 40

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 88.0 bits (219), Expect = 1e-19
 Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM-PLHCAASCNNLAMVR 396
           D S  +D+G TAL+ A+ +G+   V+  V+    +      GW    + A   N++++V 
Sbjct: 87  DDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS 146

Query: 397 FLVEHGA 403
           + +    
Sbjct: 147 YFLSEIP 153

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 87.6 bits (218), Expect = 2e-19
 Identities = 16/71 (22%), Positives = 27/71 (38%)

Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
               LH A       IV+ L+  G D +  D  G   L+ A    N+  V+  V+    +
Sbjct: 62  NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 121

Query: 406 FATTHSDHETA 416
                +  +T+
Sbjct: 122 MFYGKTGWKTS 132

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 82.2 bits (204), Expect = 1e-17
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D   A+  G +A + AI   +  +V  L+  G   N    +   PLH AA+  +  +V+ 
Sbjct: 23  DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKI 80

Query: 398 LVEHGACI 405
           L+  G   
Sbjct: 81  LLFSGLDD 88

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 81.4 bits (202), Expect = 2e-17
 Identities = 13/71 (18%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMP-LHCAASCNNLAMVRFLV 399
                 ++ +H  I  GH D++  L+ +    N  +S  ++P +  A    ++ M++ L 
Sbjct: 156 FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF 215

Query: 400 EHGACIFATTH 410
           ++   I++   
Sbjct: 216 KYDINIYSANL 226

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 77.2 bits (191), Expect = 6e-16
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 8/91 (8%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGI-TALHNAICAGHFDIVRFLVQFGCDV 372
           L  A   G ++  +K    VK           G  T+ ++A+      IV + +      
Sbjct: 99  LYYAVDSGNMQ-TVKL--FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI-PS 154

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
               +     +H      ++ M+  L+++  
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMT 185

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.1 bits (157), Expect = 1e-11
 Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 3/60 (5%)

Query: 346 GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           G+              ++  +    D    D  G    + A + NN+ +V  L+  GA  
Sbjct: 1   GMDLSRIN--TWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 5/67 (7%), Positives = 22/67 (32%), Gaps = 8/67 (11%)

Query: 338 DPSAANDEGIT-ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
             +  N       +  AI     ++++ L ++  ++ +               ++  + +
Sbjct: 186 STNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS-------ANLENVLLDDAEIAK 238

Query: 397 FLVEHGA 403
            ++E   
Sbjct: 239 MIIEKHV 245

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 52.1 bits (126), Expect = 1e-07
 Identities = 2/45 (4%), Positives = 15/45 (33%)

Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNL 392
           +A    +     +I + +++   +  +      + +      + +
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEI 267

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 85.9 bits (214), Expect = 1e-19
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           + +  +  G T L  +I  G+ ++  FL++ G +VN ++ +G  PL  A+      +V+ 
Sbjct: 93  NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKK 152

Query: 398 LVEHGA 403
           L+E GA
Sbjct: 153 LLELGA 158

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 85.5 bits (213), Expect = 2e-19
 Identities = 14/63 (22%), Positives = 24/63 (38%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             +    T L  A   G  + +  LV+    +  +D +G   L  A   N L +   L+ 
Sbjct: 30  YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89

Query: 401 HGA 403
            G+
Sbjct: 90  KGS 92

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.4 bits (210), Expect = 4e-19
 Identities = 22/68 (32%), Positives = 30/68 (44%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
                + EG TAL  A+      I   L+  G +VN +D  G  PL  +       M  F
Sbjct: 60  KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF 119

Query: 398 LVEHGACI 405
           L+EHGA +
Sbjct: 120 LLEHGANV 127

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 78.6 bits (195), Expect = 4e-17
 Identities = 17/66 (25%), Positives = 29/66 (43%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           + +  N EG T L  A   G  +IV+ L++ G D++A+D  G      A       +++ 
Sbjct: 126 NVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185

Query: 398 LVEHGA 403
             E   
Sbjct: 186 FTEVRR 191

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.5 bits (148), Expect = 6e-11
 Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 6/64 (9%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
            +  G               + FL       N +DS    PL  A        +  LVE+
Sbjct: 4   MDKNGEIVEKIKDEKSINQNLDFLR------NYRDSYNRTPLMVACMLGMENAIDKLVEN 57

Query: 402 GACI 405
              +
Sbjct: 58  FDKL 61

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 86.8 bits (216), Expect = 1e-19
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 4/88 (4%)

Query: 320 ASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ 375
           A +  E  L M+  R VK      +  N+   T LH A+     +I   L+  GCD   +
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 376 DSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           D  G  PLH A     LA V  L +   
Sbjct: 75  DFRGNTPLHLACEQGCLASVGVLTQSCT 102

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 83.8 bits (208), Expect = 2e-18
 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 320 ASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCD----- 371
           A +  + E+      L+    DP   +  G T LH A   G    V  L Q         
Sbjct: 52  AVITNQPEIAE---ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHS 108

Query: 372 -VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
            + A + +G   LH A+    L +V  LV  GA + A    +  TA
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTA 154

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 5e-18
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 341 AANDEGITALHNAICAGH----FDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
              ++G + LH AI         +++R +      +N Q++    PLH A   N   +  
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 397 FLVEHGACI 405
            L+  G   
Sbjct: 63  ALLGAGCDP 71

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 82.2 bits (204), Expect = 5e-18
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
              G TALH A+   + D+V  L++ G DVN     G+ P        +  + + L +  
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 207

Query: 403 ACIFATT----HSDHETAAVKCEEDEE 425
                        +      +  E  E
Sbjct: 208 LENLQMLPESEDEESYDTESEFTEFTE 234

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.5 bits (119), Expect = 7e-07
 Identities = 5/58 (8%), Positives = 11/58 (18%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMV 395
           D +    +G +            I + L Q   +      +                 
Sbjct: 176 DVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEFT 233

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.8 bits (211), Expect = 9e-19
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +A +D G +ALH A    + D    L++ G + + Q++    PL  AA   +    + 
Sbjct: 149 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208

Query: 398 LVEHGA 403
           L++H A
Sbjct: 209 LLDHFA 214

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 84.4 bits (210), Expect = 1e-18
 Identities = 20/64 (31%), Positives = 30/64 (46%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             +  G TALH A      D  + L++   D N QD+ G  PLH A S +   + + L+ 
Sbjct: 52  QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR 111

Query: 401 HGAC 404
           + A 
Sbjct: 112 NRAT 115

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 83.7 bits (208), Expect = 2e-18
 Identities = 22/67 (32%), Positives = 31/67 (46%)

Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
            D  A   +G T L  A       ++  L+    DVNA D  G   LH AA+ NN+    
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAV 174

Query: 397 FLVEHGA 403
            L+++GA
Sbjct: 175 VLLKNGA 181

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.9 bits (206), Expect = 5e-18
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFG-CDV 372
           L  A+     +      RL++   D +  ++ G T LH A+ A    + + L++    D+
Sbjct: 61  LHLAARYSRSDAAK---RLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDL 117

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           +A+  DG  PL  AA      M+  L+   A
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHA 148

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 79.8 bits (198), Expect = 5e-17
 Identities = 12/66 (18%), Positives = 23/66 (34%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +    N+   T L  A   G ++  + L+    + +  D    +P   A    +  +VR 
Sbjct: 182 NKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRL 241

Query: 398 LVEHGA 403
           L     
Sbjct: 242 LDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.8 bits (172), Expect = 1e-13
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 14/82 (17%)

Query: 338 DPSAANDEGITALHNAICAG-------------HFDIVRFLVQFGCDV-NAQDSDGWMPL 383
           D +    +G T L  A C+G                ++   +  G  + N  D  G   L
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETAL 61

Query: 384 HCAASCNNLAMVRFLVEHGACI 405
           H AA  +     + L+E  A  
Sbjct: 62  HLAARYSRSDAAKRLLEASADA 83

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 52.9 bits (128), Expect = 6e-08
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 13/59 (22%)

Query: 371 DVNAQDSDGWMPLHCAASC-------------NNLAMVRFLVEHGACIFATTHSDHETA 416
           DVN +  DG+ PL  A+               +  A++   +  GA +   T    ETA
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETA 60

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 84.5 bits (209), Expect = 9e-19
 Identities = 33/126 (26%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
             +  + +  TALH A  AGH +IV FL+Q G  VN +D  GW PLH AAS     +V+ 
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKA 91

Query: 398 LVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEA 457
           L+  GA + A   +             +     +  L          ++    A++   A
Sbjct: 92  LLVKGAHVNAVNQNGCTPLHYAA---SKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148

Query: 458 NNTDEL 463
               ++
Sbjct: 149 KGNLKM 154

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 77.2 bits (190), Expect = 3e-16
 Identities = 12/63 (19%), Positives = 22/63 (34%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
               I   + A      ++   ++         D D    LH A S  +  +V FL++ G
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLG 63

Query: 403 ACI 405
             +
Sbjct: 64  VPV 66

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 68.7 bits (168), Expect = 2e-13
 Identities = 33/143 (23%), Positives = 54/143 (37%), Gaps = 3/143 (2%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L  A+  G  E+V          +A N  G T LH A      +I   L++ G + +A+D
Sbjct: 77  LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS 436
                 +H AA+  NL MV  L+ + A         +    + C   +E     ++FL +
Sbjct: 137 HYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC---DEERVEEAKFLVT 193

Query: 437 VQEKLGILNNGAVYALYDYEANN 459
               + I N      L   +   
Sbjct: 194 QGASIYIENKEEKTPLQVAKGGL 216

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 67.6 bits (165), Expect = 6e-13
 Identities = 27/151 (17%), Positives = 48/151 (31%), Gaps = 6/151 (3%)

Query: 253 NNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFD 312
               E +K          + +Q         +  N  EIA +           K      
Sbjct: 83  AGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDAT 141

Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
            +     A+ +G L++V          +  + EG T LH A      +  +FLV  G  +
Sbjct: 142 AMHR---AAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASI 198

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
             ++ +   PL  A     L ++   +  G 
Sbjct: 199 YIENKEEKTPLQVAK--GGLGLILKRLAEGE 227

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 79.0 bits (195), Expect = 1e-18
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 11/68 (16%)

Query: 442 GILNNGAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN------KEG 494
              + G  Y  L+D+++   +ELSF+ G+   V RK +    +WWW+ L +       +G
Sbjct: 5   DQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEE----QWWWATLLDEAGGAVAQG 60

Query: 495 YVPRNLLG 502
           YVP N L 
Sbjct: 61  YVPHNYLA 68

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 82.8 bits (205), Expect = 1e-18
 Identities = 21/148 (14%), Positives = 43/148 (29%), Gaps = 28/148 (18%)

Query: 317 LLDASLEGELELVMKTARL------VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGC 370
           +  A++ G  E  ++   L       K+    ++     L N      + I  FL+  G 
Sbjct: 10  VSAAAMLGTYEDFLE---LFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGA 66

Query: 371 DVNAQDSDGWMPLHCAASCNN------LAMVRFLVEHGACIFATTHSDHET----AAVKC 420
           D+ ++  +G                    + +  +E GA I A     ++          
Sbjct: 67  DIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALY-KPYKIVVFKNIFNY 125

Query: 421 EEDEEGFEGCSEFLYSVQEKLGILNNGA 448
             DE       + +           +G 
Sbjct: 126 FVDENEMIPLYKLI--------FSQSGL 145

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 81.3 bits (201), Expect = 4e-18
 Identities = 14/101 (13%), Positives = 25/101 (24%), Gaps = 15/101 (14%)

Query: 317 LLDASLEGELELVMKTARLVK-------DPSAANDEGITALHNAICAGHFDIVR------ 363
                  G  + +  T  L K       D +A        +   I     D         
Sbjct: 79  FFPLFQGGGND-ITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYK 137

Query: 364 -FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
               Q G  +  +D  G   L     C     ++ + ++  
Sbjct: 138 LIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIK 178

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 57.8 bits (140), Expect = 6e-10
 Identities = 17/111 (15%), Positives = 30/111 (27%), Gaps = 17/111 (15%)

Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDV---NAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
                +  A   G ++    L + G +      + +  +  L          +  FL+  
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 402 GACIFATTHSDHET----AAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA 448
           GA I + T  +  T           D  G     +           L  GA
Sbjct: 65  GADIKSRT-KEGTTLFFPLFQGGGNDITGTTELCKIF---------LEKGA 105

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 53.5 bits (129), Expect = 2e-08
 Identities = 7/70 (10%), Positives = 20/70 (28%), Gaps = 9/70 (12%)

Query: 317 LLDASLEGELELVMKTARLVK--------DPSAANDEGITALHNAICAGHFDIVRFLVQF 368
           +        ++   +   L K             +  G+TAL           ++ +  +
Sbjct: 118 VFKNIFNYFVDEN-EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176

Query: 369 GCDVNAQDSD 378
               N +++ 
Sbjct: 177 IKKYNLKENS 186

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 78.2 bits (193), Expect = 4e-18
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           + +  V ALYDY + + D+LSF+ G+ ++VL +      EWW   S    KEGY+P N
Sbjct: 1   MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEE----SGEWWKARSLATRKEGYIPSN 54

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.8 bits (202), Expect = 1e-17
 Identities = 15/73 (20%), Positives = 24/73 (32%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
           A N    +AL   +  G   +   L          +  G  PL  AA    + + R +++
Sbjct: 183 ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242

Query: 401 HGACIFATTHSDH 413
                 A  H  H
Sbjct: 243 REFSGAAAHHHHH 255

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 81.4 bits (201), Expect = 2e-17
 Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 22/120 (18%)

Query: 297 ALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICA 356
           A+ + + G   C+       LL    +      +  A      +    +G +ALH AI  
Sbjct: 50  AVLNLQDGVNACIM-----PLLQIDKDSGNPKPLVNA----QCTDEFYQGHSALHIAIEK 100

Query: 357 GHFDIVRFLVQFGCDVNAQDS-------------DGWMPLHCAASCNNLAMVRFLVEHGA 403
                V+ LV+ G DV+ +                G +PL  AA      +V +L+E+  
Sbjct: 101 RSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 79.4 bits (196), Expect = 8e-17
 Identities = 23/118 (19%), Positives = 33/118 (27%), Gaps = 22/118 (18%)

Query: 317 LLDASLEGELELVMK--------TARLVKDPSAANDEGITALHNAICA---GHFDIVRFL 365
           L      G  E +          +  L          G T L  A+     G    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 366 VQFGCD-----------VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD 412
           +Q   D              +   G   LH A    +L  V+ LVE+GA +       
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGR 123

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 70.6 bits (173), Expect = 7e-14
 Identities = 17/93 (18%), Positives = 24/93 (25%), Gaps = 19/93 (20%)

Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFG---CDVNAQDSDGWMP----------- 382
           K        G   L  A C   +D+V +L++       + A DS G              
Sbjct: 127 KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186

Query: 383 -----LHCAASCNNLAMVRFLVEHGACIFATTH 410
                L        L M   L         + H
Sbjct: 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNH 219

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 14/58 (24%), Positives = 26/58 (44%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA 374
           L+    +G L++  +    V+    +N +G+T L  A   G  +I R ++Q      A
Sbjct: 192 LVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAA 249

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 83.8 bits (208), Expect = 1e-17
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 12/101 (11%)

Query: 317 LLDASLEGELELVMKTARLVK-----------DPSAANDEGITALHNAICAGHFDIVRFL 365
           L+  +     + V     LV+              +   +G TALH A    +  IV++L
Sbjct: 239 LMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYL 298

Query: 366 V-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
           V + G + + QD DG  P+  AA    + +V +L++ GA +
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 19/91 (20%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A+    + +V     LV     +    +++G T +  A   G  ++V +L+Q G  V
Sbjct: 283 LHYAAQVSNMPIVKY---LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASV 339

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
            A D+        A + N+  +V        
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 33/119 (27%), Positives = 50/119 (42%), Gaps = 18/119 (15%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQ---FGC 370
           L+ A L     LV   A L+K   DP+  N    +ALH A     F ++ +++       
Sbjct: 170 LMLAVLARRRRLV---AYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226

Query: 371 DVNAQDSDGWMPLHCAASCNN---LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEG 426
           D+   D +G   L   A       +A  + LVE GA +      D++ AA K  E  +G
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKV------DYDGAARKDSEKYKG 279

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 81.5 bits (202), Expect = 6e-17
 Identities = 15/66 (22%), Positives = 30/66 (45%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +A + +  T L  A+ A    +V +L++ G D    +      LH AA+  +  M+ +
Sbjct: 158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVY 217

Query: 398 LVEHGA 403
           ++    
Sbjct: 218 MLNSTK 223

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 342 ANDEGITALHNAICAGHFDIVRFL--------VQFGCDVNAQDSDGWMPLHCAASCNNLA 393
                 T LH        +    L        +  G DVNA D D   PL  A       
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 394 MVRFLVEHGA 403
           +V +L++ GA
Sbjct: 181 LVAYLMKAGA 190

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 11/87 (12%), Positives = 26/87 (29%), Gaps = 10/87 (11%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           LL+AS +G ++            +      +         G+  +  F           +
Sbjct: 41  LLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPE 91

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
            +  + LH  A+  + A+   +     
Sbjct: 92  PESPIKLHTEAA-GSYAITEPITRESV 117

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 72.7 bits (179), Expect = 4e-14
 Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 2/90 (2%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
                  G   L       ++ P+    E    LH    AG + I   + +   ++    
Sbjct: 65  NPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNII-DP 122

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIF 406
                 LH  AS ++      L+ H A   
Sbjct: 123 RHNRTVLHWIASNSSAEKSEDLIVHEAKEC 152

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 53.4 bits (129), Expect = 8e-08
 Identities = 9/76 (11%), Positives = 16/76 (21%), Gaps = 9/76 (11%)

Query: 330 MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC 389
           M+     +    +      +L  A   G+    R         N        P       
Sbjct: 21  MENEEKNRKNHQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGN 71

Query: 390 NNLAMVRFLVEHGACI 405
            N  +  F   +    
Sbjct: 72  GNDFLGDFNHTNLQIP 87

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 75.8 bits (187), Expect = 2e-17
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
           V  LY + +   +EL+F+ GE + V+ K + +  EWW  K    + G VP+N + +    
Sbjct: 9   VQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-EWWKCKNARGQVGLVPKNYVVVLSDG 67

Query: 508 QPS 510
              
Sbjct: 68  PAL 70

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 75.3 bits (186), Expect = 2e-17
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           GA+ A+Y YEA   DE+S   G+ I V+R  D +   W + + +  +G  P +
Sbjct: 1   GAMEAIYAYEAQGDDEISIDPGDIITVIRGDDGS--GWTYGECDGLKGLFPTS 51

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 75.3 bits (186), Expect = 2e-17
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYD+ A+  + LS   GE + VL     +  EW  ++  N +G+VP  
Sbjct: 8   FVALYDFVASGDNTLSITKGEKLRVLGY--NHNGEWCEAQTKNGQGWVPSA 56

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 75.4 bits (186), Expect = 2e-17
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYPRV 507
           V   YD++A N+ ELS K  + + VL    ++ R+WW  +    +EGYVP N+L  YP  
Sbjct: 11  VLCNYDFQARNSSELSVKQRDVLEVL----DDSRKWWKVRDPAGQEGYVPYNILTPYPAA 66

Query: 508 Q 508
            
Sbjct: 67  A 67

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 75.0 bits (185), Expect = 3e-17
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             A+ DY A +  +LSF  GE I++LR+   +   WWW +     GY+P N    +  V 
Sbjct: 10  FVAIADYAATDETQLSFLRGEKILILRQTTAD---WWWGERAGCCGYIPAN----H--VG 60

Query: 509 PSATP 513
             + P
Sbjct: 61  KHSGP 65

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.6 bits (197), Expect = 4e-17
 Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 10/97 (10%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV- 372
           LL A+ E +++ + K   L     +       G TALH A    + +    L++   ++ 
Sbjct: 7   LLLAAKENDVQALSKL--LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64

Query: 373 ----NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACI 405
                ++  +G   LH A    N+ +VR L+  GA +
Sbjct: 65  FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV 101

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 78.0 bits (193), Expect = 1e-16
 Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 13/80 (16%)

Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-------------GWMPL 383
           +  ++   EG TALH A+   + ++VR L+  G  V+A+ +              G  PL
Sbjct: 66  EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPL 125

Query: 384 HCAASCNNLAMVRFLVEHGA 403
             AA   +  +VR L+EHGA
Sbjct: 126 SFAACVGSEEIVRLLIEHGA 145

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 76.9 bits (190), Expect = 4e-16
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 331 KTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN 390
             +     P      G   L  A C G  +IVR L++ G D+ AQDS G   LH      
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQP 165

Query: 391 N----LAMVRFLVEHGACI 405
           N      M   L+ +    
Sbjct: 166 NKTFACQMYNLLLSYDGGD 184

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 73.4 bits (181), Expect = 5e-15
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 346 GITALHNAICAGHFDIV-RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC 404
             + L  A        + + L   GC+V+ + + G   LH AA  +NL     L+E    
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 405 I 405
           +
Sbjct: 63  L 63

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 10/78 (12%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVR----FLVQFGCDVNA------QDSDGWMPLHCAA 387
           D  A +  G T LH  I   +          L+ +    +        ++ G  P   A 
Sbjct: 146 DIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205

Query: 388 SCNNLAMVRFLVEHGACI 405
              N+ M + L++    I
Sbjct: 206 VEGNIVMFQHLMQKRKHI 223

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 74.8 bits (184), Expect = 6e-17
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
                 Y+     E+SF  G  + VL K +     WW+ +    EG+ P + L L    Q
Sbjct: 11  YMTCSAYQKVQDSEISFPAGVEVQVLEKQES---GWWYVRFGELEGWAPSHYLVLDENEQ 67

Query: 509 PSATPQ 514
           P  + +
Sbjct: 68  PDPSGK 73

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++N+++G+VP  
Sbjct: 8   VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 55

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 72.9 bits (180), Expect = 1e-16
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           V AL+D+  N+ ++L FK G+ + +  K +E     WW       K G +P  
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ----WWNAEDSEGKRGMIPVP 52

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 73.0 bits (180), Expect = 1e-16
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V  LYDY+  +  EL+ K G+ + +L   +++   WW  ++N ++G+VP  
Sbjct: 9   VLVLYDYQEKSPRELTVKKGDILTLLNSTNKD---WWKIEVNGRQGFVPAA 56

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
             ALYDYEA   D+LSF  GE   +L   + +   WW   S    + GY+P N
Sbjct: 18  FVALYDYEAITEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSN 67

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 73.1 bits (180), Expect = 1e-16
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
           V  LYD+ A N +ELS    E + VL  G     +WW  +  + + GYVP N+LG     
Sbjct: 10  VKILYDFTARNANELSVLKDEVLEVLEDGR----QWWKLRSRSGQAGYVPCNILGEAS-- 63

Query: 508 QPSA 511
            PS+
Sbjct: 64  GPSS 67

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 73.1 bits (180), Expect = 2e-16
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
              + +Y+     ELS + GE + V+ K +     WW+   + ++G+VP   L       
Sbjct: 11  YVVVSNYKKQENSELSLQAGEVVDVIEKNESG---WWFVSTSEEQGWVPATYLEAQNSGP 67

Query: 509 PSA 511
            S 
Sbjct: 68  SSG 70

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYD+EA   DEL F++GE + VL   + +   WW  +L+NK G  P N
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPS---WWTGRLHNKLGLFPAN 51

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 72.6 bits (179), Expect = 2e-16
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V ALY ++     +L  K G+ + +L K       W+    N + G  P N    Y  V+
Sbjct: 5   VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPE---WYKGSCNGRTGIFPAN----Y--VK 55

Query: 509 P 509
           P
Sbjct: 56  P 56

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 72.5 bits (179), Expect = 2e-16
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 443 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ++ +    AL+D+  N+  EL+FK G+ I +L + +++   W    +    G  P +
Sbjct: 1   LIKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLS 54

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
              +  Y + + DE+ F+ G  + V+RK  E    WW+ +   KEG+ P + L       
Sbjct: 11  YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEG---WWYIRYLGKEGWAPASYLKKAKDSG 67

Query: 509 PSA 511
           PS+
Sbjct: 68  PSS 70

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 72.8 bits (179), Expect = 3e-16
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             AL DY  ++T  L FK  + I +  K  EN  +W+  +LN KEG  P + + +     
Sbjct: 13  ARALKDYNVSDTSLLPFKRNDIITITFKDQEN--KWFMGQLNGKEGSFPVDHVEILLSDV 70

Query: 509 PSATPQ 514
           P   P 
Sbjct: 71  PPPQPV 76

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 72.2 bits (178), Expect = 3e-16
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY +E    DEL F+ G+ I +    D N   WW      + G +P N
Sbjct: 6   FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN 53

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 77.9 bits (192), Expect = 3e-16
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 23/121 (19%)

Query: 297 ALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICA 356
           A+ +   G+   +     ALLLD + + +       A      + +  +G TALH AI  
Sbjct: 61  AMLNLHNGQNDTI-----ALLLDVARKTDSLKQFVNA----SYTDSYYKGQTALHIAIER 111

Query: 357 GHFDIVRFLVQFGCDVNAQDSDGWM--------------PLHCAASCNNLAMVRFLVEHG 402
            +  +V  LV+ G DV A  +  +               PL  AA  N LA+V+FL+++ 
Sbjct: 112 RNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171

Query: 403 A 403
            
Sbjct: 172 W 172

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 15/122 (12%)

Query: 320 ASLEGELELVMKTARLVKDPSA-ANDEGITALHNAICA---GHFDIVRFLVQFGCDVNAQ 375
             LE  L  + ++ + + D      + G T L  A+     G  D +  L+      ++ 
Sbjct: 27  QELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSL 86

Query: 376 -----------DSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDE 424
                         G   LH A    N+ +V  LVE+GA + A  + D            
Sbjct: 87  KQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY 146

Query: 425 EG 426
            G
Sbjct: 147 FG 148

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.9 bits (179), Expect = 1e-14
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 19/103 (18%)

Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQFG---CDVNAQDSDGWMPLHCAASCNNL- 392
                    G   L  A C     IV+FL+Q      D++A+DS G   LH      +  
Sbjct: 139 TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNT 198

Query: 393 --------AMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGF 427
                   +M   ++  GA +       H T  ++   + +G 
Sbjct: 199 VDNTKFVTSMYNEILILGAKL-------HPTLKLEEITNRKGL 234

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.2 bits (159), Expect = 7e-12
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 22/110 (20%)

Query: 313 PLALLLDASLEGELELV---MKTARLVKDPSAANDEGITALHNAICAGHFDIVR------ 363
           PL+L   A+   +L +V   ++ +    D SA +  G T LH  +      +        
Sbjct: 151 PLSL---AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207

Query: 364 ----------FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
                      L          +  G  PL  AAS   + ++ ++++   
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 9/79 (11%), Positives = 21/79 (26%), Gaps = 11/79 (13%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQF-------GCDVNAQDSD-GWMPLHCA--- 386
                      ++ +A+   +   +  L+ F         D   +D + G   L  A   
Sbjct: 5   GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLN 64

Query: 387 ASCNNLAMVRFLVEHGACI 405
                   +  L++     
Sbjct: 65  LHNGQNDTIALLLDVARKT 83

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 315 ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA 374
              + +     L L  K    +K     N +G+T L  A  +G   ++ +++Q       
Sbjct: 202 TKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ------- 254

Query: 375 QDSDGWMPLHCAASCNN 391
           ++       H AA  ++
Sbjct: 255 REIHEPECRHAAAHHHH 271

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 72.3 bits (178), Expect = 3e-16
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             A +DY      ELSFK G  +++ ++  ++   WW  + N  +G +P   + +     
Sbjct: 12  AIAKFDYVGRTARELSFKKGASLLLYQRASDD---WWEGRHNGIDGLIPHQYIVVQDTSG 68

Query: 509 PSA 511
           PS+
Sbjct: 69  PSS 71

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 71.8 bits (177), Expect = 4e-16
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
            L+ +     +EL    G  + VL+KG++N   W     N ++G VP N
Sbjct: 12  VLFGFVPETKEELQVMPGNIVFVLKKGNDN---WATVMFNGQKGLVPCN 57

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 71.9 bits (177), Expect = 4e-16
 Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 11/67 (16%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
           +  LY++EA N  EL+   GE + VL         WW  K    + GY+P N       +
Sbjct: 10  MQVLYEFEARNPRELTVVQGEKLEVLDHSK----RWWLVKNEAGRSGYIPSN----I--L 59

Query: 508 QPSATPQ 514
           +P + P 
Sbjct: 60  EPLSGPS 66

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 71.4 bits (176), Expect = 4e-16
 Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 9/61 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N    Y  V 
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSN----Y--VC 55

Query: 509 P 509
           P
Sbjct: 56  P 56

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 72.0 bits (177), Expect = 5e-16
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
             ALYDYEA   D+LSF  GE   +L   + +   WW   S    + GY+P  
Sbjct: 8   FEALYDYEARTEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSI 57

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 72.0 bits (177), Expect = 6e-16
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++N+++G+VP   +       
Sbjct: 20  VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLAAAW 76

Query: 509 PS 510
             
Sbjct: 77  SH 78

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 72.0 bits (177), Expect = 6e-16
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLY 504
             A++D+      EL+FK G+ I VL   +++   WWW +++++EG+ P +     +   
Sbjct: 13  AEAVWDHVTMANRELAFKAGDVIKVLDASNKD---WWWGQIDDEEGWFPASFVRLWVNQE 69

Query: 505 PRVQPSATPQ 514
             V+  + P 
Sbjct: 70  DEVEEGSGPS 79

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 71.5 bits (176), Expect = 6e-16
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           V AL+D+  N+ ++L FK G+ + +  K +E     WW       K G +P  
Sbjct: 6   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ----WWNAEDSEGKRGMIPVP 54

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 71.1 bits (175), Expect = 6e-16
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             A +DY   +  ELSFK G  +++  +  E+   WW  + N  +G VP  
Sbjct: 9   AIAKFDYVGRSARELSFKKGASLLLYHRASED---WWEGRHNGIDGLVPHQ 56

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 71.6 bits (176), Expect = 7e-16
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
             ALYDY A    +LSF  GE   +L  G  +   WW   S    + GY+P N
Sbjct: 9   FVALYDYNATRWTDLSFHKGEKFQILEFGPGD---WWEARSLTTGETGYIPSN 58

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 71.5 bits (176), Expect = 7e-16
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             ALYD   + +DEL+F  G+ + +L +       WW   L+ ++G  P N      R+Q
Sbjct: 10  ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPAN------RLQ 63

Query: 509 PSATP 513
             + P
Sbjct: 64  ILSGP 68

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 71.2 bits (175), Expect = 8e-16
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYDYE    DELSF  G  I +L K ++++  +W  + N + G  P  
Sbjct: 11  VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSV 61

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 76.4 bits (188), Expect = 8e-16
 Identities = 32/122 (26%), Positives = 45/122 (36%), Gaps = 25/122 (20%)

Query: 297 ALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDP-SAANDEGITALHNAIC 355
           AL +   G+   +      +LLD + +            +  P       G TALH AI 
Sbjct: 53  ALLNLSAGRNDTI-----PILLDIAEKTG-----NMREFINSPFRDVYYRGQTALHIAIE 102

Query: 356 AGHFDIVRFLVQFGCDVNAQDS--------------DGWMPLHCAASCNNLAMVRFLVEH 401
                 V  LV+ G DV+AQ                 G +PL  AA  N   +V +L E+
Sbjct: 103 RRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTEN 162

Query: 402 GA 403
           G 
Sbjct: 163 GH 164

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 68.7 bits (168), Expect = 3e-13
 Identities = 26/133 (19%), Positives = 35/133 (26%), Gaps = 22/133 (16%)

Query: 316 LLLDASLEGELE--------LVMKTARLVKDPSAANDEGITALHNA---ICAGHFDIVRF 364
           +L D    G  +        L+    RL  +       G T L  A   + AG  D +  
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 365 LVQFGCD-----------VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
           L+                       G   LH A        V  LVE GA + A      
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 414 ETAAVKCEEDEEG 426
                +      G
Sbjct: 128 FQPKDEGGYFYFG 140

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 66.3 bits (162), Expect = 2e-12
 Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 22/120 (18%)

Query: 313 PLALLLDASLEGELELV---MKTARLVKDPSAANDEGITALHNAICAGH---------FD 360
           PL+L   A+   +  +V    +      D    +  G T LH  +               
Sbjct: 143 PLSL---AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199

Query: 361 IVRFLVQFGCDVNA-------QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
           +   L+     +          ++DG  PL  AA    + + + ++       A  H  H
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHHHHH 259

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 71.1 bits (175), Expect = 8e-16
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY Y +    +L+F  GE I+V +K    + EWW   + ++ G  P N
Sbjct: 11  YIALYPYSSVEPGDLTFTEGEEILVTQK----DGEWWTGSIGDRSGIFPSN 57

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 71.2 bits (175), Expect = 8e-16
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPR 506
              +Y Y+A+  DEL+ +  E + V+  GD    E W        + GYVP   L     
Sbjct: 16  CKVVYSYKASQPDELTIEEHEVLEVIEDGDM---EDWVKARNKVGQVGYVPEKYLQFPTS 72

Query: 507 VQPSA 511
             PS+
Sbjct: 73  SGPSS 77

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 71.1 bits (175), Expect = 9e-16
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             ALY +E    DEL F+ G+ I +    D N   WW      + G +P N    Y  V 
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN----Y--VA 60

Query: 509 PSATP 513
             + P
Sbjct: 61  EQSGP 65

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 70.9 bits (174), Expect = 1e-15
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 18/75 (24%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---------NNKEGYVPRN 499
             AL+DY+A   ++LSF+ G+ + VL    E    WW ++             +GY+P N
Sbjct: 10  FVALFDYQARTAEDLSFRAGDKLQVLDTSHEG---WWLARHLEKKGTGLGQQLQGYIPSN 66

Query: 500 LLGLYPRVQPSATPQ 514
               Y  V   + P 
Sbjct: 67  ----Y--VAEDSGPS 75

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 69.9 bits (172), Expect = 1e-15
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYDY+A   DEL+FK G+ IIV +K       WW  +LN K G+VP N
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAG---WWEGELNGKRGWVPAN 53

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 69.9 bits (172), Expect = 1e-15
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
             YD+ A + DEL+ K+G+ + +L   D+  ++WW  +L  + K G VP  
Sbjct: 7   VQYDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQ 55

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 70.3 bits (173), Expect = 1e-15
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V A+YD++A    +L  + G+  I+L K D +   WW ++     EGY+P N
Sbjct: 5   VVAMYDFQATEAHDLRLERGQEYIILEKNDLH---WWRARDKYGSEGYIPSN 53

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 69.9 bits (172), Expect = 1e-15
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY +    + +L F+ G+ I +L+K D    +WW  ++N +EG  P N
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVITILKKSDSQN-DWWTGRVNGREGIFPAN 55

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 71.0 bits (174), Expect = 1e-15
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
           V  LY + +   +EL+F+ GE + V+ K + +  EWW  K    + G VP+N + +    
Sbjct: 20  VQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-EWWKCKNARGQVGLVPKNYVVVLSDG 78

Query: 508 QPSATPQ 514
                  
Sbjct: 79  PALHPAH 85

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 510
            L  Y A    E++ K G+ + +L   +++   WW  ++N+++G+VP      Y +   S
Sbjct: 5   PLPPYSAGG-REVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA----YVKKLDS 56

Query: 511 ATPQ 514
            T +
Sbjct: 57  GTGK 60

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 69.9 bits (172), Expect = 1e-15
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSN 55

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 70.4 bits (173), Expect = 2e-15
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
           V A +DY A    EL  K  E + +L    ++ + WW  +   NK G+VP N +      
Sbjct: 10  VVAKFDYVAQQEQELDIKKNERLWLL----DDSKSWWRVRNSMNKTGFVPSNYVERKNSA 65

Query: 508 QPSA 511
           + +A
Sbjct: 66  RAAA 69

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 69.9 bits (172), Expect = 2e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
               +DY+A + DEL+   GE I  +RK D     WW  ++N + G  P N
Sbjct: 4   AIVEFDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDN 51

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--------NNKEGYVPRN 499
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++          ++G+VP  
Sbjct: 4   VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVKITVNGKTYERQGFVPAA 59

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
              L+ Y   N DEL+F+ GE I ++ K +  E  WW  +LN KEG  P N
Sbjct: 9   CRTLFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWKGELNGKEGVFPDN 58

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 52

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 70.1 bits (172), Expect = 2e-15
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             A + Y      ELSF+ G+ + +  +   +   WW  + N   G +P  
Sbjct: 13  AVACFAYTGRTAQELSFRRGDVLRLHERASSD---WWRGEHNGMRGLIPHK 60

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY +     ++L  + G+ I +L   +E+   WW  K+ ++ G+ P N
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNED---WWKGKIQDRIGFFPAN 57

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 70.0 bits (172), Expect = 2e-15
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 499
             A Y++      +L F  G+ + ++    +    W+ +K    +EG +P N
Sbjct: 14  CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP--NWYKAKNKVGREGIIPAN 63

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 69.5 bits (171), Expect = 2e-15
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPR 506
             AL+ Y A+  +EL  + GE I VL K  +    W    S L  + G  P +    Y  
Sbjct: 10  FVALHTYSAHRPEELDLQKGEGIRVLGKYQDG---WLKGLSLLTGRTGIFPSD----Y-- 60

Query: 507 VQPSATPQ 514
           V P + P 
Sbjct: 61  VIPVSGPS 68

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V A +DY A    EL  K  E + +L    ++ + WW  +   N+ GYVP N
Sbjct: 7   VIAKWDYTAQQDQELDIKKNERLWLL----DDSKTWWRVRNAANRTGYVPSN 54

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 69.5 bits (171), Expect = 3e-15
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V AL+ YEA   ++L F+ G+ I+VL K +E    W   +   K G  P+     +  V+
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEE---WLEGESKGKVGIFPKV----F--VE 58

Query: 509 PSAT 512
            SAT
Sbjct: 59  DSAT 62

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 69.6 bits (171), Expect = 3e-15
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYDY A N DEL    G+ + V+ +G++    WW  + N + G+VP +
Sbjct: 11  YRALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGS 58

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 69.8 bits (171), Expect = 3e-15
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V AL  Y  +N   LSF  G+ I +L      E  W +     + G  P +       VQ
Sbjct: 11  VIALRSYITDNCSLLSFHRGDLIKLLPV-ATLEPGWQFGSAGGRSGLFPAD----I--VQ 63

Query: 509 PSATP 513
           P+A P
Sbjct: 64  PAAAP 68

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 69.2 bits (170), Expect = 3e-15
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           V ALYDY+    DELSFK G+ +  L + DE     W        G +    LGLYP
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKLGEEDEQ---GWC------RGRLDSGQLGLYP 53

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 68.8 bits (169), Expect = 4e-15
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 507
             + YD+ A N+ ELS    + + +L    ++ R+WW  +  +   G+VP N+L +    
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEIL----DDRRQWWKVRNASGDSGFVPNNILDIMRTP 59

Query: 508 Q 508
           +
Sbjct: 60  E 60

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
              L++Y   N DEL  K G+ I +  + +E    WW   LNNK G  P N
Sbjct: 4   CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSN 51

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 68.8 bits (169), Expect = 5e-15
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN---LLGLYP 505
             ALYD+E  N  EL FK G+ I +  + DEN   W+   L+   G+ P N   +L   P
Sbjct: 10  CRALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALP 66

Query: 506 RVQPSA 511
              PS+
Sbjct: 67  HSGPSS 72

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 68.5 bits (168), Expect = 6e-15
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
             A+ D+ A    +L+FK GE ++V+ K  +    WW +K     EG VPR 
Sbjct: 13  YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDG---WWIAKDAKGNEGLVPRT 61

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 68.4 bits (168), Expect = 6e-15
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY Y+A +TDELSF   + I ++++       WW  +L  K+G  P N
Sbjct: 8   CKALYAYDAQDTDELSFNANDIIDIIKEDPSG---WWTGRLRGKQGLFPNN 55

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 499
           V ALYDY   N ++L  + G+   +L + +     WW ++  N +EGY+P N
Sbjct: 11  VVALYDYMPMNANDLQLRKGDEYFILEESNLP---WWRARDKNGQEGYIPSN 59

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNKEGYVPRN 499
               YDY+A + DEL+ + GE I  ++K  E   E W   +LN + G  P N
Sbjct: 4   YIVEYDYDAVHDDELTIRVGEIIRNVKKLQE---EGWLEGELNGRRGMFPDN 52

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 68.4 bits (168), Expect = 7e-15
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
              LYD+E  N  EL FK G+ I +  + DEN   W+   ++ + G+ P N
Sbjct: 6   CRGLYDFEPENQGELGFKEGDIITLTNQIDEN---WYEGMIHGESGFFPIN 53

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 68.0 bits (167), Expect = 7e-15
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             +D++A +  EL+ + G+ + + ++ D+N   W   + + + G  P N
Sbjct: 6   LKFDFQAQSPKELTLQKGDIVYIHKEVDKN---WLEGEHHGRLGIFPAN 51

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 68.4 bits (168), Expect = 8e-15
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             A +D++A    EL  + G+ + + ++ D+N   W+  + + + G  PR 
Sbjct: 10  ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQN---WYEGEHHGRVGIFPRT 57

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 69.1 bits (169), Expect = 8e-15
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNK-EGYVPRNLLGLYPR 506
             A YD+ A + +E+SF+ G+ + +  K  + +   W    L+ +  G +P N + +  +
Sbjct: 20  ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGK 79

Query: 507 VQPSATPQ 514
            +   T +
Sbjct: 80  RRGRKTIE 87

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A ++++  N DELSF  G+ I V R  +     WW    N + G+ P N
Sbjct: 7   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 54

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           V AL+ YE ++  +L F+ GE + +L    E   EWW   S    +EG++P N
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRIL----EQSGEWWKAQSLTTGQEGFIPFN 57

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
               YD+ A + DEL+ K+G+ + +L   D+  ++WW  +L  + K G VP  
Sbjct: 9   GIVQYDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQ 59

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
              ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N
Sbjct: 5   CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 54

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 67.7 bits (166), Expect = 1e-14
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A+YD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N
Sbjct: 20  VRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSN 67

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 68.6 bits (168), Expect = 1e-14
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A+YDY ANN DELSF  G+ I V+ K D +   WW  ++N   G  P N
Sbjct: 37  VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSN 84

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           A+Y +E ++   +S   GE + ++ +      + W    +    EGYVP +
Sbjct: 12  AIYHFEGSSEGTISMAEGEDLSLMEEDKG---DGWTRVRRKEGGEGYVPTS 59

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V ALYD+EA   +EL+FK GE IIVL   D N   WW  + +   G  P N +     ++
Sbjct: 20  VRALYDFEAVEDNELTFKHGEIIIVLDDSDAN---WWKGENHRGIGLFPSNFVTTNLNIE 76

Query: 509 PSATPQ 514
             A   
Sbjct: 77  TEAAAV 82

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A+YDY  +  DELSF+ G  I V++K D+    W+   +N   G  P N
Sbjct: 20  VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGN 67

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 66.8 bits (164), Expect = 2e-14
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
            LY Y   + DE++   G+ I ++ +        W    +    + G VP  
Sbjct: 6   VLYAYVQKDDDEITITPGDKISLVARDTG---SGWTKINNDTTGETGLVPTT 54

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 67.8 bits (166), Expect = 2e-14
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V ALYDY+ N+  EL+ +  E   +L   + +   WW  +  N  EGYVP +
Sbjct: 22  VIALYDYQTNDPQELALRRNEEYCLLDSSEIH---WWRVQDRNGHEGYVPSS 70

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
              L++Y   N DEL  K G+ I +  + +E    WW   LNNK G  P N
Sbjct: 10  CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSN 57

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 67.3 bits (165), Expect = 2e-14
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           AL D+E ++ DEL F+  + I ++ + DE+    W  +LN   G+ P  
Sbjct: 12  ALLDFERHDDDELGFRKNDIITIISQKDEH---CWVGELNGLRGWFPAK 57

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V ALYDY+ N+  EL+ +  E   +L   + +   WW  +  N  EGY P +
Sbjct: 23  VIALYDYQTNDPQELALRCDEEYYLLDSSEIH---WWRVQDKNGHEGYAPSS 71

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A ++++  N DELSF  G+ I V R  +     WW    N + G+ P N
Sbjct: 9   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 56

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 66.9 bits (164), Expect = 2e-14
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYDY+A   DE+SF   + I  +   D+    WW      + G  P N
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPAN 59

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 67.4 bits (165), Expect = 2e-14
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V ALY +E     +L+F+ G+ I V+ K D    +WW  KL  + G  P N    Y  V 
Sbjct: 20  VTALYSFEGQQPGDLNFQAGDRITVISKTDS-HFDWWEGKLRGQTGIFPAN----Y--VT 72

Query: 509 PSATP 513
            ++ P
Sbjct: 73  MNSGP 77

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS---KLNNKEGYVPRN 499
             A YDY+A   +EL+F   + II +   D++    WW    + +  +G  P N
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDD----WWLGELEKDGSKGLFPSN 52

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 67.5 bits (165), Expect = 3e-14
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           V ALYDYEA + ++LSF+ G+ ++VL +      EWW   S    KEGY+P N
Sbjct: 28  VVALYDYEAIHHEDLSFQKGDQMVVLEESG----EWWKARSLATRKEGYIPSN 76

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 66.9 bits (164), Expect = 3e-14
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             A YD++A   DELSFK G+ + VL +  E ++ W+ ++LN K+G++P+N
Sbjct: 12  AIAKYDFKATADDELSFKRGDILKVLNE--ECDQNWYKAELNGKDGFIPKN 60

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
               + Y   N DEL  K G+ I V+ + +E    WW   LN K G  P N
Sbjct: 10  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEG---WWEGVLNGKTGMFPSN 57

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLGLYPRV 507
           V ALYDY AN +DEL+   G+ I V  K +E+   WW+  +   +EGY P N    +  V
Sbjct: 9   VVALYDYTANRSDELTIHRGDIIRVFFKDNED---WWYGSIGKGQEGYFPAN----H--V 59

Query: 508 QPSATPQ 514
                 Q
Sbjct: 60  ASETLYQ 66

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 66.7 bits (163), Expect = 3e-14
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           +  L DY + +     F+ GE + V+     +E  WW   S    +E Y+P  
Sbjct: 20  LAVLSDYPSPDISPPIFRRGEKLRVI----SDEGGWWKAISLSTGRESYIPGI 68

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 66.6 bits (163), Expect = 4e-14
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             AL+D+  N+  EL+FK G+ I +L + +++   W    +    G  P +
Sbjct: 21  AEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLS 68

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           V A+  Y    +TDE+SF  G+  IV  + ++    W W  +   +++G +  +
Sbjct: 10  VRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVED 60

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 66.2 bits (162), Expect = 5e-14
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
              ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N
Sbjct: 12  CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 61

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 66.3 bits (162), Expect = 5e-14
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
            LYDY+A N+ ELS    E I V      +  +W   +  N++G VP  
Sbjct: 22  VLYDYDAANSTELSLLADEVITVFSVVGMDS-DWLMGERGNQKGKVPIT 69

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 65.7 bits (161), Expect = 6e-14
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 499
           G   A +++  +   E+SF+ GE I +LR+ DEN   W+  ++   +++G  P  
Sbjct: 7   GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPIT 58

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 67.1 bits (164), Expect = 6e-14
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
             ALYDYEA  T++LSFK GE   ++   + +   WW   S    K GY+P N
Sbjct: 30  FVALYDYEARTTEDLSFKKGERFQIINNTEGD---WWEARSIATGKSGYIPSN 79

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 65.7 bits (161), Expect = 6e-14
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYD+E  N  EL F+ G+ I +  + DEN   W+   L+ + G+ P +
Sbjct: 16  CKALYDFEPENDGELGFREGDLITLTNQIDEN---WYEGMLHGQSGFFPLS 63

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 65.7 bits (161), Expect = 7e-14
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           AL +Y   N  +L F  G+ I++ R+ DEN   W+  ++N   G  P +
Sbjct: 12  ALCNYRGKNPGDLKFNKGDVILLRRQLDEN---WYQGEINGVSGIFPAS 57

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 65.8 bits (161), Expect = 7e-14
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYDY+A   DE+SF   + I  +   D+    WW      + G  P N
Sbjct: 20  AVALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPAN 67

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 65.4 bits (160), Expect = 7e-14
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
             A+Y Y   N DEL  + G+ + V+++ D+    W+   S+   K G  P N
Sbjct: 10  YRAMYQYRPQNEDELELREGDRVDVMQQCDDG---WFVGVSRRTQKFGTFPGN 59

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 65.4 bits (160), Expect = 9e-14
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
              ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N
Sbjct: 10  CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 59

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 65.4 bits (160), Expect = 9e-14
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             A Y++ A +  ELS + G+ + +  +    ++ WW  + N + G+ P  
Sbjct: 10  AVARYNFAARDMRELSLREGDVVRIYSR-IGGDQGWWKGETNGRIGWFPST 59

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 64.5 bits (158), Expect = 1e-13
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
           ALYD+E  N +EL    G+ + +  K  +     W    ++  +K G VP  
Sbjct: 6   ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVPEE 53

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 65.6 bits (160), Expect = 1e-13
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V A +DY A    EL  K  E + +L    ++ + WW  +   N+ GYVP N
Sbjct: 34  VIAKWDYTAQQDQELDIKKNERLWLL----DDSKTWWRVRNAANRTGYVPSN 81

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 65.0 bits (159), Expect = 1e-13
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 499
           A +++  +   E+SF+ GE I +LR+ DEN   W+  ++   +++G  P  
Sbjct: 12  AKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPIT 59

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 64.6 bits (158), Expect = 2e-13
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A ++++  N DELS   G+ I V R  +     WW   LN + G+ P N
Sbjct: 13  VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGRTGWFPSN 60

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKEGYVPRNLLGLYP 505
           V  +YD +A+N DEL+F  GE IIV  + D+    WW   +     ++G  P + + +  
Sbjct: 13  VKTIYDCQADNDDELTFIEGEVIIVTGEEDQE---WWIGHIEGQPERKGVFPVSFVHILS 69

Query: 506 RVQPSA 511
              PS+
Sbjct: 70  DSGPSS 75

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 64.7 bits (158), Expect = 2e-13
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY ++A   DEL+ + G+ +I+  K +E    WW+  LN K+G+ P  
Sbjct: 12  ALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFPAA 57

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-----KEGYVPRN 499
           V A + Y+++  D+L+F+  + IIV    D    EW++ +  +      EG  P++
Sbjct: 10  VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDA---EWYFGEYQDSNGDVIEGIFPKS 62

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 64.2 bits (157), Expect = 2e-13
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
           ALYD+E  N +EL    G+ + +  K  +     W    ++  +K G VP  
Sbjct: 10  ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVPEE 57

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 63.8 bits (156), Expect = 2e-13
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 499
           V AL+DY+A   DEL+F     I  + K D     WW      K+  + P N
Sbjct: 6   VKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WWRGDYGGKKQLWFPSN 54

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 64.3 bits (157), Expect = 2e-13
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             AL  + A   + L+F   + I VL +  EN   WW+ +++   G+ P++
Sbjct: 13  AQALCSWTAKKDNHLNFSKHDIITVLEQ-QEN---WWFGEVHGGRGWFPKS 59

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 63.9 bits (156), Expect = 3e-13
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 449 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 499
             ALYD+   N + E++ K G+ + +L K D    + +WW  +  N   GY+P N
Sbjct: 10  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 64

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 68.2 bits (166), Expect = 3e-13
 Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 2/49 (4%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A YD++A   DELSFK G+ + VL +  E ++ W+ ++LN K+G++P+N
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNE--ECDQNWYKAELNGKDGFIPKN 51

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 208

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 64.4 bits (157), Expect = 4e-13
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             + Y   N DEL  K G+ I V+ + +E    WW   LN K G  P N
Sbjct: 23  VAFSYLPQNDDELELKVGDIIEVVGEVEEG---WWEGVLNGKTGMFPSN 68

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 63.1 bits (154), Expect = 5e-13
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRN 499
           V ALYDY+A  +DEL+F  G  I  + K       WW      + + Y P N
Sbjct: 10  VKALYDYKAKRSDELTFCRGALIHNVSKEPGG---WWKGDYGTRIQQYFPSN 58

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 63.6 bits (155), Expect = 6e-13
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
            Y  ++Y A   DELS   G  +IV+ K  +    WW    N + G+ P N
Sbjct: 20  AYVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSN 67

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 63.2 bits (154), Expect = 6e-13
 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
                ++      EL+F+ G+ + +L   +    + W+      + +EG +   
Sbjct: 20  CITKCEHTRPKPGELAFRKGDVVTILEACEN---KSWYRVKHHTSGQEGLLAAG 70

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 63.0 bits (154), Expect = 6e-13
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY  +A +  ELSF  G     +    E    W    LN K G +P N
Sbjct: 13  AKALYACKAEHDSELSFTAGTVFDNVHPSQEP--GWLEGTLNGKTGLIPEN 61

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 63.7 bits (155), Expect = 7e-13
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY +EA N DE+SF +G+ I V  K    E  W +       G+ P N
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEK-TVGEPGWLYGSFQGNFGWFPCN 57

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 63.2 bits (154), Expect = 8e-13
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--WSKLNNKEGYVPRN 499
             A Y ++ +   ELSF+ GE I ++RK +EN   W+        ++G  P +
Sbjct: 20  AVAQYTFKGDLEVELSFRKGEHICLIRKVNEN---WYEGRITGTGRQGIFPAS 69

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 66.2 bits (161), Expect = 8e-13
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             A+ DYE  +  E++  TG+ + V+ K +     WW+ ++  K G++P + L       
Sbjct: 14  YRAIADYEKTSGSEMALSTGDVVEVVEKSESG---WWFCQMKAKRGWIPASFLEPLDSPD 70

Query: 509 PSATPQ 514
            +  P+
Sbjct: 71  ETEDPE 76

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 65.4 bits (159), Expect = 1e-12
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             A+  Y A   DE+S   GE + V+ K  +    WW  + ++  GY P   L    +  
Sbjct: 84  YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQKSGQDV 140

Query: 509 PSATPQ 514
             A  Q
Sbjct: 141 SQAQRQ 146

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 62.8 bits (153), Expect = 9e-13
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 449 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 499
             ALYD+   N + E++ K G+ + +L K D    + +WW  +  N   GY+P N
Sbjct: 17  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 501
           V A+  Y    +TDE+SF  G+  IV  + ++    W W  +   +++G +  +L+
Sbjct: 8   VRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVEDLV 60

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
           A+YDY A + DE+SF+ G+ I+ ++  D+     W     +   + G +P N
Sbjct: 11  AMYDYSAQDEDEVSFRDGDYIVNVQPIDDG----WMYGTVQRTGRTGMLPAN 58

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 17/106 (16%), Positives = 33/106 (31%), Gaps = 11/106 (10%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAAN--DEGITALHNAICAGHFDIVRFLVQFGCD 371
              A+  G L ++    RL +       A    E   A   A   GH  ++  L +    
Sbjct: 132 FRLAAENGHLHVL---NRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188

Query: 372 VNAQD--SDGWMPLHCAASCNN-LAMVRFLVEHGACIFATTHSDHE 414
                  ++ +     AA       ++ FL++    +      + E
Sbjct: 189 EATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFE 234

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 14/104 (13%), Positives = 28/104 (26%), Gaps = 5/104 (4%)

Query: 314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L L          +L     +              A     C+   D +  L+     V 
Sbjct: 67  LCLYYAHYNRNAKQLWSDAHKKGIKSEVIC---FVAAITG-CSSALDTLCLLLTSDEIVK 122

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT-HSDHETA 416
              ++ +     AA   +L ++  L E           +++  A
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHA 166

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 65.4 bits (159), Expect = 1e-11
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 17/108 (15%)

Query: 320 ASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGH---FDIVRFL-----VQFGCD 371
           ++ +G  +LV K         +   +G   L N I        D +RFL     ++    
Sbjct: 261 SNPDGVFDLVTK---------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAP 311

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVK 419
                 D    L  A    N      L+   + +  T  +++      
Sbjct: 312 TATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETG 359

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 58.8 bits (142), Expect = 1e-09
 Identities = 11/96 (11%), Positives = 31/96 (32%), Gaps = 8/96 (8%)

Query: 313 PLALLLDASLEGELELV-----MKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ 367
            L  L+  + E  L+ +     +   + +   +    +    L  A+  G+      L+ 
Sbjct: 281 MLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 340

Query: 368 FGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
               +    ++ +   +   +   L +    +EH  
Sbjct: 341 IPSVLALTKANNY---YINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 9e-05
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 11/106 (10%)

Query: 317 LLDASLEGELELV--MKTARLVKDPSAANDEGITALHNAICA-GHFDIVRFLVQFGCDVN 373
              A+  G L ++  +      +  +    E   A   A    GH +++ FL+     + 
Sbjct: 167 FRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVK 419
             +                 +  F+  H        H   + +   
Sbjct: 227 YAE-------IHEFEYGEKYVNPFIARHVN-RLKEMHDAFKLSNPD 264

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 499
           V AL+DY+A   DEL+F     I  + K +     WW      K+  + P N
Sbjct: 9   VKALFDYKAQREDELTFIKSAIIQNVEKQEGG---WWRGDYGGKKQLWFPSN 57

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 62.9 bits (153), Expect = 2e-12
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 447 GAVYA--LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRN 499
           G++YA  LYD++A   DEL+   GE + +    +    EW+ +K        G VP  
Sbjct: 4   GSLYAIVLYDFKAEKADELTTYVGENLFICAHHNC---EWFIAKPIGRLGGPGLVPVG 58

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.4 bits (164), Expect = 2e-12
 Identities = 30/250 (12%), Positives = 78/250 (31%), Gaps = 11/250 (4%)

Query: 233 KDTSCPPPLPTTE-PPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEI 291
            +     P+ T     + D +++ ++ +K   +   +                    QE+
Sbjct: 19  DNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEM 78

Query: 292 AEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAND-EGITAL 350
               +   S +  +    +     +  D+ L+   +    T     + +   D  G T L
Sbjct: 79  PTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQ---LNLNIPVDEHGNTPL 135

Query: 351 HNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR---FLVEHGACIFA 407
           H      + ++V+ LV+ G +    D+ G   L  A    N         L+++      
Sbjct: 136 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI 195

Query: 408 TTHSDHETA---AVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELS 464
              S + T     +              +L  +   +    N  + +  + + +  ++ +
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255

Query: 465 FKTGECIIVL 474
            +  + I+  
Sbjct: 256 GERKDSILEN 265

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.4 bits (146), Expect = 3e-10
 Identities = 16/99 (16%), Positives = 31/99 (31%)

Query: 289 QEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGIT 348
             +       ++  +                   +  LE +     +    +A +  G T
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 285

Query: 349 ALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA 387
            L+ A   G+  IV  L+ +G D    +  G  P+   A
Sbjct: 286 CLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 17/78 (21%), Positives = 34/78 (43%)

Query: 328 LVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA 387
           +V K  R ++  +   +      +        + +         +NAQDS+G   L+ AA
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291

Query: 388 SCNNLAMVRFLVEHGACI 405
              N+++V  L+++GA  
Sbjct: 292 RLGNISIVDALLDYGADP 309

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 61.1 bits (149), Expect = 2e-12
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 451 ALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
           A YD+    +  EL  K G+ I + R+       W   KL   +KEG+VP  
Sbjct: 5   AAYDFPGSGSPSELPLKKGDVIYITREEPSG---WSLGKLLDGSKEGWVPTA 53

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 63.9 bits (155), Expect = 2e-12
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
             A YD+ A +  ELS K G+ I +L K  + ++ WW  ++  + G+ P N +
Sbjct: 8   AKARYDFCARDRSELSLKEGDIIKILNK--KGQQGWWRGEIYGRIGWFPSNYV 58

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 61.0 bits (148), Expect = 2e-12
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             + Y A   DELS   G  + V+    +    WW    N + G+ P N
Sbjct: 6   VXFAYVAEREDELSLVXGSRVTVMEXCSDG---WWRGSYNGQIGWFPSN 51

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 61.2 bits (149), Expect = 3e-12
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 451 ALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
           A YD+  + ++ EL  K G+ + + R        W  +KL   +KEG+VP  
Sbjct: 7   AAYDFPGSGSSSELPLKKGDIVFISRDEPSG---WSLAKLLDGSKEGWVPTA 55

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 61.8 bits (150), Expect = 3e-12
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 449 VYALYDYEANNT--------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             AL+DY+            +EL FK G+ I V    D +   ++  +   + G +P N
Sbjct: 20  FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG--FYRGETCARLGLIPCN 76

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 66.6 bits (162), Expect = 3e-12
 Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 342 ANDEGITALHNAICAGH---FDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
           A       LH A+   +     +V F++Q G  ++A+ +DG   LH AA  N    ++ L
Sbjct: 186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 245

Query: 399 VEHGA 403
           ++  A
Sbjct: 246 LKGRA 250

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 58.5 bits (141), Expect = 1e-09
 Identities = 22/168 (13%), Positives = 49/168 (29%), Gaps = 8/168 (4%)

Query: 239 PPLPTTEPPSDDNINNN---IEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIK 295
           P     +P ++ ++      I     +    F+     +  R+  +  +      +    
Sbjct: 115 PSHGGPKPSAESDMGTRRDYIMAKYVEH--RFARRCTPEPQRLWTAICNRDLLSVLEAFA 172

Query: 296 SALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLV---KDPSAANDEGITALHN 352
           +    G+             +L  A        +     ++       A   +G TALH 
Sbjct: 173 NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232

Query: 353 AICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
           A      D ++ L++    V   +  G   L  A   ++      L +
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 60.0 bits (146), Expect = 6e-12
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 444 LNNGAVY--ALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           L NG +Y   +     N  +   L+ + GE + V +         W  + N K G+ P  
Sbjct: 2   LQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFT 58

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 61.0 bits (148), Expect = 6e-12
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
            +Y Y   N DEL    G+ I +      +  E W    S      G +P N
Sbjct: 21  VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPEN 72

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 60.6 bits (147), Expect = 7e-12
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWWSKLNN-KEGYVPRNLLGLYP 505
             A++DYEA   +EL+ + G+ + VL +      +  WW  +L + + G  P N    Y 
Sbjct: 32  WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSN----Y- 86

Query: 506 RVQP 509
            V P
Sbjct: 87  -VAP 89

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 62.9 bits (152), Expect = 9e-12
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 420 CEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE 479
                  F+       S+           V   + +      +L F+ GE + +L K ++
Sbjct: 92  IPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQ 151

Query: 480 NEREWWWSK-LNNKEGYVPRN 499
           +   WW ++      G VP N
Sbjct: 152 D---WWEARNALGTTGLVPAN 169

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 59.7 bits (145), Expect = 1e-11
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 449 VYALYDYEANNT-------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           + ALYDY+   +        EL+F TG+ I V  + DE+   +++ +LN ++G VP N
Sbjct: 10  MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDED--GFYYGELNGQKGLVPSN 65

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 61.1 bits (148), Expect = 1e-11
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYPRV 507
            LY+++A   DEL    GE + +    D    EW+ +K  N     G VP + + +   +
Sbjct: 8   TLYEFKAERDDELDVSPGENLSICAHYDY---EWFIAKPINRLGGPGLVPVSYVRIIDLM 64

Query: 508 QPSATP 513
            P+   
Sbjct: 65  DPAKYA 70

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 449 VYALYDYEANNTD--ELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
             ALY Y+A++ D  E+SF+  E + V     + E  WW ++  N + G +P N
Sbjct: 8   AKALYPYDADDDDAYEISFEQNEILQVS----DIEGRWWKARRANGETGIIPSN 57

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 449 VYALYDYEANNT-------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           + A  DY+  +          L+ + G+ ++V    D+    +++ +L    G VP +
Sbjct: 10  MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQ--GFYYGELGGHRGLVPAH 65

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 64.2 bits (156), Expect = 1e-11
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)

Query: 340 SAANDEGITALHNAICAG---HFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
           +  ++   TALH A+ +       IV FLVQ   +++ Q   G   LH     +N   ++
Sbjct: 163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLK 222

Query: 397 FLVEHGACIFATTHS 411
            L+   A I     S
Sbjct: 223 LLLRGKASIEIANES 237

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.9 bits (137), Expect = 3e-09
 Identities = 11/63 (17%), Positives = 23/63 (36%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           +      +G TALH      + + ++ L++    +   +  G  PL  A    +      
Sbjct: 197 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEEL 256

Query: 398 LVE 400
           L +
Sbjct: 257 LTQ 259

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 59.8 bits (145), Expect = 1e-11
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 449 VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRNLLGLY 504
             ALYD+   N + E++ K G+ + +L K D    + +WW  +  N   GY+P N + + 
Sbjct: 17  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76

Query: 505 PRVQPSATPQ 514
            R +      
Sbjct: 77  KRRKKIEHVD 86

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN 490
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++N
Sbjct: 24  VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVN 62

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL----NNKEGYVPRN 499
           ++ DYE +  +   F+ G  + VL +       WW+ ++       +G+VP N
Sbjct: 15  SIADYEGDE-ETAGFQEGVSMEVLERNPN---GWWYCQILDGVKPFKGWVPSN 63

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 58.2 bits (141), Expect = 4e-11
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-----EGYVPRN 499
                 Y A+ +++LS   G+ I++L+K       WW  +L  +     +G+ P +
Sbjct: 10  AQVTSAYVASGSEQLSLAPGQLILILKKNTSG---WWQGELQARGKKRQKGWFPAS 62

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 57.7 bits (140), Expect = 4e-11
 Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
             A++ +   + DEL  +  + ++V  + ++    W+   +      G  P  
Sbjct: 9   HRAIFRFVPRHEDELELEVDDPLLVELQAEDY---WYEAYNMRTGARGVFPAY 58

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 62.9 bits (152), Expect = 5e-11
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V   + +      +L F+ GE + +L K +++   WW ++      G VP N
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQD---WWEARNALGTTGLVPAN 198

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 50.2 bits (119), Expect = 7e-07
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
               A +  +L  K G+ ++V +K        + ++L+ + G VP  
Sbjct: 256 RVPNAYDPTQLRVKKGQTVLVTQKMSNG---MYKAELDGQIGSVPHT 299

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 57.3 bits (139), Expect = 5e-11
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 449 VYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             A+      A +   L+ + G+ + V R         W  ++N ++G  P  
Sbjct: 4   AKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFT 53

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 58.0 bits (140), Expect = 6e-11
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 449 VYALYDYE------ANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNL 500
             A Y Y        N   EL    G+ + V    DE   + ++    L+ + G VP N 
Sbjct: 20  CVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDE---DGFYEGELLDGQRGLVPSNF 76

Query: 501 LGLYPRVQPSATPQ 514
           +      +      
Sbjct: 77  VDFVQDNESRLAST 90

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 57.0 bits (138), Expect = 9e-11
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 449 VYALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
              +YD+ A    +EL+   GE I V           W        ++G VP +
Sbjct: 12  ARVMYDFAAEPGNNELTVTEGEIITVTNPNVG---GGWLEGKNNKGEQGLVPTD 62

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 56.0 bits (136), Expect = 1e-10
 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
             A++ +   + DEL  +  + ++V  + ++     W+   +      G  P  
Sbjct: 6   HRAIFRFVPRHEDELELEVDDPLLVELQAEDY----WYEAYNMRTGARGVFPAY 55

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.1 bits (150), Expect = 1e-10
 Identities = 31/139 (22%), Positives = 41/139 (29%), Gaps = 3/139 (2%)

Query: 268 STESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELE 327
                    R     P            S     +   +   S  P ALL  AS      
Sbjct: 154 IRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSL 213

Query: 328 LVMKTARLV---KDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLH 384
             M  A       +      +  T L  A  A       FL+Q G +VN  DS G  PLH
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273

Query: 385 CAASCNNLAMVRFLVEHGA 403
            A    +  +    ++ GA
Sbjct: 274 HATILGHTGLACLFLKRGA 292

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 30/169 (17%), Positives = 53/169 (31%)

Query: 232 TKDTSCPPPLPTTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEI 291
            +        P  +PP     +            +  +E             +  +   +
Sbjct: 154 IRGRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSL 213

Query: 292 AEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALH 351
             +  AL  G          D    L+ A+    L       +   + + A+  G   LH
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH 273

Query: 352 NAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
           +A   GH  +    ++ G D+ A+DS+G  PL  A    N  +V  L  
Sbjct: 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 56.3 bits (136), Expect = 1e-10
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V+  +     +TD L  K G+ I ++ K        W   LNNK G     
Sbjct: 14  VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMG---TWMGLLNNKVGTFKFI 61

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 56.2 bits (136), Expect = 1e-10
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
           V  ++ + A NN   LSF  G+ + +L   +++   W + +       G+ P +
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD--GWLYGEHDTTKARGWFPSS 61

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 57.8 bits (139), Expect = 1e-10
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWW----------SKLNNKEGYV 496
           V A +DY A +TDEL  K G+ ++V+   +  E++  W             +L    G  
Sbjct: 47  VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 106

Query: 497 PRN 499
           P N
Sbjct: 107 PEN 109

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
           V  ++ + A +N   LSF  G+ I +L   +++   W + +   +   G+ P +
Sbjct: 9   VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKD--GWLYGEHDVSKARGWFPSS 60

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
                   A +   L+ + G+ + V R         W  ++N ++G  P  
Sbjct: 21  AIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFT 68

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 61.6 bits (150), Expect = 2e-10
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           A Y++      +L F  G+ + ++      +   W+       +EG +P N
Sbjct: 16  AKYNFHGTAEQDLPFCKGDVLTIV---AVTKDPNWYKAKNKVGREGIIPAN 63

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 55.8 bits (134), Expect = 3e-10
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 509
           A  ++ A    ++S   G+ + V++K D    +  W       +G+V  + L  Y   + 
Sbjct: 22  AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS 81

Query: 510 SATPQ 514
            +   
Sbjct: 82  HSDAS 86

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 60.4 bits (145), Expect = 3e-10
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             AL+D+  N+  EL+FK G+ I +L + +++   W    +    G  P + + +     
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLSFVKILKDFP 233

Query: 509 PSATPQ 514
               P 
Sbjct: 234 EEDDPT 239

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 56.2 bits (135), Expect = 4e-10
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 20/82 (24%)

Query: 428 EGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW-- 485
           + CS  +                AL DY A +   L+   G+ + V  K     R +W  
Sbjct: 16  QECSHPISMAV------------ALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGG 63

Query: 486 ------WSKLNNKEGYVPRNLL 501
                 +  L  + GY P +++
Sbjct: 64  SVQGDYYGDLAARLGYFPSSIV 85

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYD+ A+  + LS   GE + VL     +  EW  ++  N +G+VP N
Sbjct: 46  FVALYDFVASGDNTLSITKGEKLRVLGY--NHNGEWCEAQTKNGQGWVPSN 94

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
           V A++ + A +N+  LSFK G+ I +L        + W    S+     G+ P +
Sbjct: 10  VKAIFSHAAGDNSTLLSFKEGDLITLLVPEAR---DGWHYGESEKTKMRGWFPFS 61

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 54.7 bits (132), Expect = 6e-10
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 499
           V     + A   DE++ +  + ++VL++ D      W       + + G+ P +
Sbjct: 20  VEITKAFFAKQADEVTLQQADVVLVLQQEDG-----WLYGERLRDGETGWFPED 68

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 54.1 bits (130), Expect = 1e-09
 Identities = 11/43 (25%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 457 ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A    E++ K G+ + +L   +++   WW  ++N+++G+VP  
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 41

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 57.6 bits (138), Expect = 1e-09
 Identities = 27/144 (18%), Positives = 51/144 (35%), Gaps = 6/144 (4%)

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCS 431
           +N+      +P   A     ++  R  +      F +  +  E   +   +     E  S
Sbjct: 64  INSSGPRPPVPPSPAQPPPGVSPSRLRIGD--QEFDSLPALLEFYKIHYLDTTTLIEPVS 121

Query: 432 EFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LN 490
                    L       V AL+D+  N+ ++L FK G+ + +  K +E    WW ++   
Sbjct: 122 RSRQGSGVILRQEEAEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSE 178

Query: 491 NKEGYVPRNLLGLYPRVQPSATPQ 514
            K G +P   +  Y     S +  
Sbjct: 179 GKRGMIPVPYVEKYRPASASVSAL 202

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 58.9 bits (143), Expect = 2e-09
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 9/63 (14%)

Query: 442 GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYV 496
           G + +G    V ALYDYEA + ++LSF+ G+ ++VL    E   EWW   S    KEGY+
Sbjct: 1   GAMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYI 56

Query: 497 PRN 499
           P N
Sbjct: 57  PSN 59

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 58.1 bits (139), Expect = 2e-09
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V       A +   L+ + GE + V +         W  + N K G+ P      + R+ 
Sbjct: 242 VIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFT----HVRLL 294

Query: 509 PSATPQ 514
               P+
Sbjct: 295 DQQNPE 300

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 49.2 bits (116), Expect = 2e-06
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRNLLGLYPRVQPSA 511
           +D+  N+ ++L FK G+ + +  K +E    WW       K G +P   +  Y     S 
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYRPASASV 197

Query: 512 TPQ 514
           +  
Sbjct: 198 SAL 200

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 52.9 bits (127), Expect = 2e-09
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 449 VYALYDYE-ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 505
           V AL D+   ++   L+ + G+ I VL +  +     W   ++  +    R  +G +P
Sbjct: 21  VRALKDFWNLHDPTALNVRAGDVITVLEQHPDG---RWKGHIHESQRGTDR--IGYFP 73

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 461 DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ 514
            E++ K G+ + +L   +++   WW  ++N+++G+VP      Y +   S T +
Sbjct: 4   REVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA----YVKKLDSGTGK 50

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 56.9 bits (136), Expect = 4e-09
 Identities = 10/105 (9%), Positives = 25/105 (23%), Gaps = 7/105 (6%)

Query: 410 HSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGE 469
            +                      +  +                   A +   L+ + G+
Sbjct: 203 PAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKRVPCAYDKTALALEVGD 262

Query: 470 CIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ 514
            + V R         W  ++N ++G  P      + ++     P 
Sbjct: 263 IVKVTRMNING---QWEGEVNGRKGLFPFT----HVKIFDPQNPD 300

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 52.3 bits (124), Expect = 1e-07
 Identities = 23/145 (15%), Positives = 47/145 (32%), Gaps = 13/145 (8%)

Query: 364 FLV--------QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHET 415
           FLV         +   V+         ++   +       +      A +       +  
Sbjct: 36  FLVRDSSTCPGDYVLSVSENSRVSHYIINSLPNRRFKIGDQEFDHLPALL-EFYKIHYLD 94

Query: 416 AAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLR 475
                E            + +        N   V  LYD+  N+ ++L FK GE ++++ 
Sbjct: 95  TTTLIEPAPRYPSPPMGSVSAPNLPTAEDNLEYVRTLYDFPGNDAEDLPFKKGEILVIIE 154

Query: 476 KGDENEREWWWSKL-NNKEGYVPRN 499
           K +E    WW ++  + + G +P  
Sbjct: 155 KPEEQ---WWSARNKDGRVGMIPVP 176

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 57.1 bits (136), Expect = 8e-09
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 499
           ALYDYE    DELSFK G+ +  +   DE    W   +L+N + G  P N
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQ--GWCKGRLDNGQVGLYPAN 480

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 56.5 bits (136), Expect = 1e-08
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             AL+D+   +  EL FK G+ I V+   D   REWWW ++ + EG+ P + + L     
Sbjct: 33  AEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPASFVRLRVNQD 89

Query: 509 PS 510
             
Sbjct: 90  EP 91

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 55.1 bits (133), Expect = 3e-08
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           ALYDYE+    +LSFK GE + ++   +    +WW   S    + GY+P N
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEG---DWWLAHSLSTGQTGYIPSN 54

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 50.0 bits (119), Expect = 3e-08
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 15/68 (22%)

Query: 447 GAVY-ALYDYEANNTDELSFKTGECIIVLRKGDEN-----------EREWWW---SKLNN 491
           G  Y ALY +     ++L    G+ ++V R   +            +   W    ++   
Sbjct: 11  GFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTR 70

Query: 492 KEGYVPRN 499
           + G  P  
Sbjct: 71  QRGDFPGT 78

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V  +YDY A N DEL+F  G+ I VL K D    +WW  +++ + G  P N + L   + 
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDP---DWWKGEVSGQVGLFPSNYVKLTTDMD 61

Query: 509 PSATPQ 514
           PS    
Sbjct: 62  PSQQWC 67

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 48.9 bits (116), Expect = 2e-07
 Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A+Y+++ +   +LS + G+ + +      +    +  K    +G  P++
Sbjct: 64  AIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKS 111

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 48.9 bits (116), Expect = 5e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           V AL+ YE ++  +L F+ GE + +L    E   EWW   S    +EG++P N
Sbjct: 15  VIALHSYEPSHDGDLGFEKGEQLRIL----EQSGEWWKAQSLTTGQEGFIPFN 63

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
             ALYDYE+    +LSFK GE + ++   +    +WW   S    + GY+P N
Sbjct: 88  FVALYDYESRTETDLSFKKGERLQIVNNTEG---DWWLAHSLSTGQTGYIPSN 137

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus} Length = 82

 Score = 43.4 bits (102), Expect = 6e-06
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN----KEGYVPRNLLGL 503
              L D+ A ++ ELS + G+ + +L +       W   +       +EG VP + L +
Sbjct: 20  TVVLQDFSAAHSSELSIQVGQTVELLER-PSERPGWCLVRTTERSPPQEGLVPSSTLCI 77

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 45.1 bits (106), Expect = 1e-05
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPRV 507
           A+Y+++ +   +LS + G+ + +         +W+   L      +G  P++ + +    
Sbjct: 22  AIYNFQGSGAPQLSLQIGDVVRIQETCG----DWYRGYLIKHKMLQGIFPKSFIHIKEVT 77

Query: 508 QPSATPQ 514
                  
Sbjct: 78  VEKRRNT 84

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY 504
           Y +          L    G+ + + +   E E  WW  +    N+ G+ P N +  Y
Sbjct: 22  YGIPPPPGAFGGFLRLNPGDIVELTKA--EAEHNWWEGRNTATNEVGWFPCNRVHPY 76

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 41.2 bits (96), Expect = 3e-05
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLR---------KGDENERE---WW--WSKLNNKEGYV 496
           ALYDY+    +++    G+ + V +          G E   E   W   +++   + G  
Sbjct: 10  ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69

Query: 497 PRNLLGLYPRVQPS 510
           P   +    R + S
Sbjct: 70  PGTYVEYIGRKKIS 83

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A Length = 96

 Score = 40.5 bits (94), Expect = 1e-04
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 501
           A  D +    +ELSFK GE I ++R  D N    W  +      GY+    +
Sbjct: 33  ACCDVK-GGKNELSFKQGEQIEIIRITD-NPEGKWLGRTARGSYGYIKTTAV 82

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 449 VYALYDYEAN------NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNL 500
           +    +Y             L    G+ + + +   E E  WW  +    N+ G+ P N 
Sbjct: 7   MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKA--EAEHNWWEGRNTATNEVGWFPCNR 64

Query: 501 LGLY 504
           +  Y
Sbjct: 65  VHPY 68

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 2e-04
 Identities = 58/470 (12%), Positives = 134/470 (28%), Gaps = 159/470 (33%)

Query: 24  QIQSSMNSQKPVLFLLL------GITCLALAPSSSNSNNSTTSQIQSSMNSQKPVS--SV 75
           +++ ++   +P   +L+      G T +AL    S         +Q  M+ +  +   ++
Sbjct: 139 KLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK-------VQCKMDFK--IFWLNL 189

Query: 76  A----PTALHEQQQALVFQAASTKVHPVQPITLMSTSQQLSSVKDNKND--RTESHT--- 126
                P  + E  Q L++Q         +     +   ++ S++       +++ +    
Sbjct: 190 KNCNSPETVLEMLQKLLYQI--DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL 247

Query: 127 -------DSETLSPKPALPPKPAVPIKS-----TPPPPPRQSNISSVDTNEEEVKNTTQV 174
                  +++  +         A  +       T     R   +    T+      TT +
Sbjct: 248 LVLLNVQNAKAWN---------AFNLSCKILLTT-----RFKQV----TDFLSAATTTHI 289

Query: 175 --VDAKGNLDMVKTGQL-----EQRIFNL-----------------NLRD----SDN--- 203
                   L   +   L     + R  +L                 ++RD     DN   
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349

Query: 204 --NKRLNGSIAISTQELDGSQPRRA--TLSIVTKDTSCPPPL--------PTTEPPSDDN 251
               +L   I  S   L+ ++ R+    LS+       P  L          ++     N
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN 409

Query: 252 -------INNNIEDIKEDKTS------DFSTESPDQTD---RVINS------------SP 283
                  +    +  KE   S      +   +  ++      +++              P
Sbjct: 410 KLHKYSLVE---KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIP 466

Query: 284 SDSNN---QEIA-EIKSALKSGK-------------LGKKRCVSFDPLALLLDASLEGEL 326
              +      I   +K+     +             L +K  +  D  A     S+   L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTL 524

Query: 327 ELVMKTARLVKDPSAANDEGITAL--------HNAICAGHFDIVRFLVQF 368
           + +      + D     +  + A+         N IC+ + D++R  +  
Sbjct: 525 QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDEN------EREWWWSKLNNKEG 494
           +   ++ E +    L F  G+   VL                W +    ++ 
Sbjct: 7   IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDL 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	514
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	100.0
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.96
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.94
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.94
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.93
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.93
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.93
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.93
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.93
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.93
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.92
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
2rfa_A	232	Transient receptor potential cation channel subfa	99.92
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.92
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.92
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.92
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.92
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.92
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.92
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.92
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.92
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.91
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.91
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.91
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
2etb_A	256	Transient receptor potential cation channel subfam	99.91
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.91
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.91
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.91
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.91
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.91
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.91
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.9
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.9
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.9
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.9
2pnn_A	273	Transient receptor potential cation channel subfa	99.9
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.9
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
2etb_A	256	Transient receptor potential cation channel subfam	99.9
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.89
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.89
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.87
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.87
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.86
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.86
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.85
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.85
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.85
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.85
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.84
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.84
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.83
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.83
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.82
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.82
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.81
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.79
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.78
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.78
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.77
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.75
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.74
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.74
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.68
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	98.72
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	98.65
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	98.64
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	98.64
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	98.63
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	98.62
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	98.62
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	98.61
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	98.61
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	98.61
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	98.6
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	98.6
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	98.59
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	98.58
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	98.58
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	98.57
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	98.57
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	98.57
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	98.56
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	98.56
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	98.55
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	98.55
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	98.55
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	98.55
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	98.55
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	98.55
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	98.55
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	98.55
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	98.54
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	98.54
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	98.54
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	98.53
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	98.53
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	98.53
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	98.53
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	98.53
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	98.53
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	98.53
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	98.53
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	98.53
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	98.53
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	98.52
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	98.52
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	98.52
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	98.52
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	98.52
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	98.52
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	98.51
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	98.51
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	98.51
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	98.51
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	98.51
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	98.51
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	98.51
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	98.51
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	98.51
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	98.51
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	98.51
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	98.51
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	98.51
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	98.51
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	98.5
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	98.5
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	98.5
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	98.5
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	98.5
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	98.49
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	98.49
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	98.49
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	98.49
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	98.49
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	98.49
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	98.49
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	98.49
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	98.49
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	98.48
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	98.48
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	98.48
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	98.48
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	98.48
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	98.48
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	98.48
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	98.48
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	98.48
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	98.48
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	98.47
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	98.47
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	98.47
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	98.47
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	98.46
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	98.46
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	98.46
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	98.46
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	98.46
3u23_A	65	CD2-associated protein; structural genomics, struc	98.46
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	98.46
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	98.46
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	98.45
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	98.45
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	98.45
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	98.45
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	98.44
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	98.44
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	98.44
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	98.44
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	98.44
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	98.43
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	98.43
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	98.42
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	98.42
1wxb_A	68	Epidermal growth factor receptor pathway substrate	98.42
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	98.41
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	98.41
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	98.41
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	98.4
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	98.4
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	98.4
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	98.4
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	98.4
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	98.39
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	98.39
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	98.39
1i07_A	60	Epidermal growth factor receptor kinase substrate	98.39
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	98.39
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	98.39
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	98.39
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	98.39
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	98.38
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	98.38
1awj_A	77	ITK; transferase, regulatory intramolecular comple	98.38
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	98.38
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	98.37
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	98.37
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	98.37
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	98.37
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	98.37
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	98.36
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	98.36
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	98.36
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	98.36
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	98.35
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	98.35
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	98.35
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	98.34
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	98.33
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	98.33
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	98.32
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	98.32
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	98.31
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	98.3
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	98.29
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	98.29
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	98.28
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	98.28
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	98.25
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	98.23
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	98.21
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	98.2
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	98.19
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	98.18
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	98.18
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	98.17
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	98.16
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	98.16
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	98.13
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	98.11
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	98.09
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	98.08
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	98.08
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	98.08
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	98.05
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.02
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	98.0
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	97.99
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	97.98
1u3o_A	82	Huntingtin-associated protein-interacting protein;	97.97
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	97.96
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	97.9
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	97.89
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	97.88
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	97.83
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.74
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	96.89
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	97.64
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	97.63
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	97.63
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	97.6
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	97.57
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	97.54
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	97.54
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	97.51
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	96.64
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	97.49
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	97.46
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	97.45
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	97.38
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	97.36
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	97.31
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	97.27
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	97.27
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	97.26
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	97.05
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	96.72
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	96.54
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	96.0
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	95.83
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	95.21
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	95.04
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	94.56
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	92.75
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	91.42

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=100.00  E-value=9.6e-38  Score=303.93  Aligned_cols=227  Identities=57%  Similarity=1.001  Sum_probs=183.9

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..+...++.+.++.+|+.|.....   ...+.|+||+|+..|+.++|++|++.|++++.+|..|+||||+||..|+.++
T Consensus         9 L~~a~~~~~~~~~~~ll~~g~~~~~---~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~   85 (239)
T 1ycs_B            9 LPPGKRTNLRKTGSERIAHGMRVKF---NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEI   85 (239)
T ss_dssp             -------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CchhhhhhhHHHHHHHhccCCCccc---CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            3446667888899999999844332   2468999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCC-chhhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH-ETAAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       362 VklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~-t~l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      |++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|+ |+++.+ .+...|+.+|+++|+++|++
T Consensus        86 v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a-~~~~~g~~~~~~~Ll~~~a~  164 (239)
T 1ycs_B           86 VKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC-EEMEEGYTQCSQFLYGVQEK  164 (239)
T ss_dssp             HHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC-CSSSTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHH-HHhhhccHHHHHHHHHhhhc
Confidence            9999999999999999999999999999999999999999999999999988 777655 33478999999999999999


Q ss_pred             cccccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCCCC
Q psy7683         441 LGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSAT  512 (514)
Q Consensus       441 ~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~~~  512 (514)
                      ++..+.++.++++++.+.+..++.|+.|+++.++.+.+.++.+||+++++|+.|+||.+||+.++++.|+.+
T Consensus       165 ~~~~~~~~~~al~d~~~~~~~eLa~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~~~~~~  236 (239)
T 1ycs_B          165 MGIMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQR  236 (239)
T ss_dssp             TTTTGGGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC-------
T ss_pred             ccccccceEEEEeccCCCCCCcccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcCCcccc
Confidence            999999999999999999999999999999999999887777899999999999999999999999988654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1e-31  Score=261.05  Aligned_cols=217  Identities=49%  Similarity=0.922  Sum_probs=193.0

Q ss_pred             HHHHHHcC-CCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCC
Q psy7683         294 IKSALKSG-KLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV  372 (514)
Q Consensus       294 ik~lL~~g-~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadv  372 (514)
                      ++.+|+.| .....+..+.++.++||+|+..|+.++|++|++.|++++.+|..|+||||+||..|+.++|++|+++|+++
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~   80 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV   80 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            35566666 45556677889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchhhhHhhcCchHHHHHHHhcCccccccc-CCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhh
Q psy7683         373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT-HSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYA  451 (514)
Q Consensus       373 n~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d-~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~ta  451 (514)
                      +.+|..|+||||+|+..|+.+++++|+++|++++..+ ..|.|++++++ +...|+.+++++|+++|++++..+.++.++
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~-a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~  159 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD-PYREGYADCATYLADVEQSMGLMNSGAVYA  159 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCC-TTSTTHHHHHHHHHHHHHHTTTSGGGEEEE
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHH-HHhcChHHHHHHHHHcCCCcccccCCchHH
Confidence            9999999999999999999999999999999999997 58899998872 128899999999999999999999999999


Q ss_pred             hhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCCC
Q psy7683         452 LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA  511 (514)
Q Consensus       452 L~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~~  511 (514)
                      ++.+......++.++.|..+.+..+...+.+-++++...|+.+++++.|+..++|+.|..
T Consensus       160 l~~~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~~~~  219 (229)
T 2vge_A          160 LWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQR  219 (229)
T ss_dssp             SSCBCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC---
T ss_pred             HHHHhhccccccCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCCCch
Confidence            999998888899999999988888888888999999999999999999999999998753

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.96  E-value=4e-29  Score=232.42  Aligned_cols=157  Identities=27%  Similarity=0.337  Sum_probs=142.4

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..++..|+++.|+.||+.|..  .+..+..|.|+||+|+..++.+++++|++.|++++.+|..|+||||+||..|+.++
T Consensus         8 L~~Aa~~G~~~~v~~Ll~~Gad--vn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            8 LIEAAENGNKDRVKDLIENGAD--VNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            3457889999999999999843  34456789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       362 VklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      |++|+++|+++|.+|.+|+||||+|+..|+.++|++|+++|++++.+|..|.||+++++   ..|+.+++++|+++||++
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~---~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAR---EHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHTC----
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH---HcCCHHHHHHHHHCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999887   889999999999999998


Q ss_pred             cc
Q psy7683         442 GI  443 (514)
Q Consensus       442 ~i  443 (514)
                      +-
T Consensus       163 e~  164 (169)
T 4gpm_A          163 EH  164 (169)
T ss_dssp             --
T ss_pred             CC
Confidence            64

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=6.6e-27  Score=217.39  Aligned_cols=144  Identities=27%  Similarity=0.377  Sum_probs=137.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHH
Q psy7683         315 ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAM  394 (514)
Q Consensus       315 t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~ei  394 (514)
                      ..|+.||..|+.++|++||+.|+|+|.+|..|+||||+|+..++.+++++|+++|++++.+|.+|+||||+|+..|+.++
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~   85 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEV   85 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHH
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhccccc
Q psy7683         395 VRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTD  461 (514)
Q Consensus       395 vklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~  461 (514)
                      |++|+++|++++.+|..|.|++++++   ..|+.+++++|+++|++++..|..|.++|+.+......
T Consensus        86 v~~Ll~~gadvn~~d~~G~TpLh~A~---~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~  149 (169)
T 4gpm_A           86 VKLLISKGADVNAKDSDGRTPLHHAA---ENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNE  149 (169)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHCcCCCCCCCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999999988   88999999999999999999999999999876654443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.94  E-value=1.7e-26  Score=220.83  Aligned_cols=202  Identities=24%  Similarity=0.198  Sum_probs=161.5

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+++.++.+++.+... ....+..|.|+||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.++++
T Consensus        12 ~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   90 (231)
T 3aji_A           12 NLAYSGKLDELKERILADKSL-ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVK   90 (231)
T ss_dssp             HHHHHTCHHHHHHHHHHCGGG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHhchhh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHH
Confidence            366778899999888876432 3344577889999999999999999999999999998889999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++.
T Consensus        91 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~~~~  167 (231)
T 3aji_A           91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAA---AKGNLKMVHILLFYKASTNI  167 (231)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH---HcCCHHHHHHHHhcCCCccc
Confidence            999999999999999999999999999999999999999999998888999988887   77889999999999999998


Q ss_pred             ccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                      .+..|.++|+.+......+       ++..+.+.+..      -...+..|..|.+++.
T Consensus       168 ~~~~g~t~L~~A~~~~~~~-------~v~~Ll~~ga~------~~~~~~~g~t~l~~A~  213 (231)
T 3aji_A          168 QDTEGNTPLHLACDEERVE-------EAKFLVTQGAS------IYIENKEEKTPLQVAK  213 (231)
T ss_dssp             CCTTSCCHHHHHHHTTCHH-------HHHHHHHTTCC------SCCCCTTSCCHHHHSC
T ss_pred             cCCCCCCHHHHHHHCCCHH-------HHHHHHHCCCC------CCCCCCCCCCHHHHHH
Confidence            8888888887666544333       22333222110      1235667888887764

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.94  E-value=8.5e-27  Score=228.50  Aligned_cols=204  Identities=19%  Similarity=0.071  Sum_probs=148.2

Q ss_pred             ccCcccHHHHHHHHHcCCC-CCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKL-GKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~-~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      ++..|+++.++.+++.|.. ...+..+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        16 A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~   95 (282)
T 1oy3_D           16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC   95 (282)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCcchhH
Confidence            5667888888888887643 224555677889999999999999999999999988888888999999999889999999


Q ss_pred             HHHhhCCC-----------------------------------------------CcccCCCCCchhhhHhhcCchHHHH
Q psy7683         364 FLVQFGCD-----------------------------------------------VNAQDSDGWMPLHCAASCNNLAMVR  396 (514)
Q Consensus       364 lLL~~Gad-----------------------------------------------vn~~D~~G~TPLh~Aa~~g~~eivk  396 (514)
                      +|+++|++                                               ++..|..|+||||+|+..|+.++++
T Consensus        96 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~  175 (282)
T 1oy3_D           96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR  175 (282)
T ss_dssp             HHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             hhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHH
Confidence            88887755                                               6777888889999999988899999


Q ss_pred             HHHhcCcccccccCC-CCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccccccccccCceEEEee
Q psy7683         397 FLVEHGACIFATTHS-DHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLR  475 (514)
Q Consensus       397 lLL~~GAdin~~d~~-g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~  475 (514)
                      +|+++|++++..+.. |.|++++++   ..|+.+++++|+++|++++.++..|.++|+.+......+       ++.+|.
T Consensus       176 ~Ll~~g~~~~~~~~~~g~tpL~~A~---~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~-------~v~~Ll  245 (282)
T 1oy3_D          176 LLRDAGADLNKPEPTCGRTPLHLAV---EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI-------LARLLR  245 (282)
T ss_dssp             HHHHHTCCTTCCCTTTCCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH-------HHHHHH
T ss_pred             HHHHcCCCCCCCCCCCCcCHHHHHH---HcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcH-------HHHHHH
Confidence            999999988888755 888888777   778888999999889988888888888887766544433       333333


Q ss_pred             cCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         476 KGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       476 ~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      +.+..      ....+..|.+|.+++..-
T Consensus       246 ~~ga~------~~~~~~~g~tpl~~a~~~  268 (282)
T 1oy3_D          246 AHGAP------EPEDGGDKLSPCSSSGSD  268 (282)
T ss_dssp             HTTCC------CCCCC-------------
T ss_pred             HcCCC------cCcCCCcccccccccCCc
Confidence            32111      123556788887766543

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.94  E-value=3.5e-26  Score=209.58  Aligned_cols=163  Identities=24%  Similarity=0.191  Sum_probs=146.6

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+++.++.+++.+... .+..+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus         8 ~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   86 (172)
T 3v30_A            8 QLAAQGELDQLKEHLRKGDNL-VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG   86 (172)
T ss_dssp             HHHHTTCHHHHHHHHTTCSGG-GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCccc-ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHH
Confidence            356789999999999987432 3445678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++|+++..
T Consensus        87 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A           87 LLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAV---ALGYRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             HHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH---HhCcHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999887   78999999999999999887


Q ss_pred             ccccchh
Q psy7683         444 LNNGAVY  450 (514)
Q Consensus       444 ~d~~g~t  450 (514)
                      .+..+.+
T Consensus       164 ~~~~~~~  170 (172)
T 3v30_A          164 SNLVPAD  170 (172)
T ss_dssp             C------
T ss_pred             ccCCCCC
Confidence            7765544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=1.8e-26  Score=225.39  Aligned_cols=202  Identities=17%  Similarity=0.119  Sum_probs=126.7

Q ss_pred             cccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHh
Q psy7683         288 NQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQ  367 (514)
Q Consensus       288 ~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~  367 (514)
                      .++.+.++.+++.|... ....+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        33 ~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  111 (253)
T 1yyh_A           33 EDAPAVISDFIYQGASL-HNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIR  111 (253)
T ss_dssp             --------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CCChHHHHHHHHccCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            44666677777766332 22234567777777777777777777777777777777777777777777777777777777


Q ss_pred             hCC-CCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccc
Q psy7683         368 FGC-DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNN  446 (514)
Q Consensus       368 ~Ga-dvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~  446 (514)
                      +|+ +++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++|++++..+.
T Consensus       112 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~  188 (253)
T 1yyh_A          112 NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA---AVNNVDAAVVLLKNGANKDMQNN  188 (253)
T ss_dssp             STTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHH---HHTCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCCCCcCC
Confidence            766 77777777777777777777777777777777777777777777777766   66777777777777777777777


Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .|.++|+.+......+       ++.+|.+.+..      ....+..|..|.+++...++
T Consensus       189 ~g~tpL~~A~~~~~~~-------~v~~Ll~~ga~------~~~~d~~g~tpl~~A~~~g~  235 (253)
T 1yyh_A          189 REETPLFLAAREGSYE-------TAKVLLDHFAN------RDITDHMDRLPRDIAQERMH  235 (253)
T ss_dssp             TSCCHHHHHHHHTCHH-------HHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHCCCHH-------HHHHHHHcCCC------ccccccCCCCHHHHHHHcCC
Confidence            7777776555433332       22333221110      12345567777776655543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.93  E-value=6.4e-26  Score=225.13  Aligned_cols=170  Identities=19%  Similarity=0.221  Sum_probs=151.2

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..++..|+++.++.+++.|..  .+..+..|.|+||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.++
T Consensus        44 l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~  121 (299)
T 1s70_B           44 FLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI  121 (299)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Confidence            3447788999999999999843  34456789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccCC------------------------------------------------------------CCCc
Q psy7683         362 VRFLVQFGCDVNAQDS------------------------------------------------------------DGWM  381 (514)
Q Consensus       362 VklLL~~Gadvn~~D~------------------------------------------------------------~G~T  381 (514)
                      |++|+++|++++..|.                                                            .|.|
T Consensus       122 v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t  201 (299)
T 1s70_B          122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT  201 (299)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             HHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCC
Confidence            9999999999887664                                                            4667


Q ss_pred             hhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         382 PLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       382 PLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      |||+|+..|+.+++++|+++|++++..|..|.|++++++   ..|+.+++++|+++|++++..|..|.+++..+.
T Consensus       202 ~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~---~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA---HWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             HHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHH---hcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence            788888889999999999999999999999999998887   788999999999999999999999998887653

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.93  E-value=9.8e-26  Score=214.71  Aligned_cols=170  Identities=19%  Similarity=0.174  Sum_probs=155.3

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCcc-CCCCchhHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRC-VSFDPLALLLDASLEGELELVMKTARLV--KDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~-~~~~g~t~Lh~Aa~~g~~~~V~~LL~~g--ad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +...++.+.++.+++.|....... .+..|.|+||+|+..|+.+++++|+++|  ++++..+..|+||||+|+..|+.++
T Consensus        43 A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~  122 (228)
T 2dzn_A           43 SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV  122 (228)
T ss_dssp             HHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhH
Confidence            566789999999999984444444 6778999999999999999999999998  8899999999999999999999999


Q ss_pred             HHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcC-cccccccCCCCchhhhhhhhhhcCchhhHHHHH-hhhh
Q psy7683         362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG-ACIFATTHSDHETAAVKCEEDEEGFEGCSEFLY-SVQE  439 (514)
Q Consensus       362 VklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~G-Adin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl-~~GA  439 (514)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++| ++++..|..|.|++++++   ..|+.+++++|+ ++|+
T Consensus       123 ~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~---~~~~~~~v~~Ll~~~ga  199 (228)
T 2dzn_A          123 SQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHAL---AEGHGDAAVLLVEKYGA  199 (228)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHH---HTTCHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHH---HcCCHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999 999999999999999887   789999999999 8999


Q ss_pred             hcccccccchhhhhhhhc
Q psy7683         440 KLGILNNGAVYALYDYEA  457 (514)
Q Consensus       440 d~~i~d~~g~taL~d~~~  457 (514)
                      +++..|..|.+++..+..
T Consensus       200 ~~~~~~~~g~t~l~~A~~  217 (228)
T 2dzn_A          200 EYDLVDNKGAKAEDVALN  217 (228)
T ss_dssp             CSCCBCTTSCBGGGGCSS
T ss_pred             CCCccCCCCCcHHHHHHH
Confidence            999999999999986644

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=5.5e-26  Score=226.01  Aligned_cols=168  Identities=24%  Similarity=0.229  Sum_probs=143.7

Q ss_pred             ccCcccH-HHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         285 DSNNQEI-AEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~g~i-~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      +...+.. ..++.+++.|..  .+..+..|.||||+||..|+.++|++|++.|++++.++..|.||||+|+..++.++++
T Consensus        59 a~~~~~~~~~v~~Ll~~Gad--vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~  136 (269)
T 4b93_B           59 CPKCAPAQKRLAKVPASGLG--VNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVK  136 (269)
T ss_dssp             ----------------CCCC--TTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHH
Confidence            3333443 356677777732  3345678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|++++.+|..|+||||+||..|+.++|++||++|++++..+..|.|++++++   ..|+.++|++|+++|+++++
T Consensus       137 ~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          137 CLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAV---IEKHVFVVELLLLHGASVQV  213 (269)
T ss_dssp             HHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHH---HTTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHH---HcCCHHHHHHHHHCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999988   88999999999999999999


Q ss_pred             ccccchhhhhhhhc
Q psy7683         444 LNNGAVYALYDYEA  457 (514)
Q Consensus       444 ~d~~g~taL~d~~~  457 (514)
                      +|..|.|+|+.+..
T Consensus       214 ~d~~G~TpL~~A~~  227 (269)
T 4b93_B          214 LNKRQRTAVDCAEQ  227 (269)
T ss_dssp             CCTTSCCSGGGSCT
T ss_pred             cCCCCCCHHHHHHh
Confidence            99999999976543

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.93  E-value=6.7e-26  Score=217.44  Aligned_cols=204  Identities=24%  Similarity=0.335  Sum_probs=170.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+++.++.+++.|..  .+..+..|.|+||+|+..|+.+++++|+++|++++.++..|.||||+|+..|+.+++++
T Consensus        18 A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~   95 (237)
T 3b7b_A           18 AAEAGHVDICHMLVQAGAN--IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY   95 (237)
T ss_dssp             HHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCC--cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Confidence            6677899999999998743  23445678999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhC-CCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         365 LVQFG-CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       365 LL~~G-advn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      |+++| ++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.++++.++   ..|+.+++++|+++|++++.
T Consensus        96 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~~~~Ll~~g~~~~~  172 (237)
T 3b7b_A           96 LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAA---FSGCVDIAEILLAAKCDLHA  172 (237)
T ss_dssp             HHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHCCHHHHHHHHTTTCCTTC
T ss_pred             HHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHH---HCCCHHHHHHHHHcCCCCCC
Confidence            99998 899999999999999999999999999999999999999999999998887   77899999999999999999


Q ss_pred             ccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .|..|.++|+.+......+       ++..+.+.+..      ....+..|..|.+++...++
T Consensus       173 ~~~~g~t~L~~A~~~~~~~-------~v~~Ll~~gad------~~~~d~~g~t~l~~A~~~~~  222 (237)
T 3b7b_A          173 VNIHGDSPLHIAARENRYD-------CVVLFLSRDSD------VTLKNKEGETPLQCASLNSQ  222 (237)
T ss_dssp             CCTTCCCHHHHHHHTTCHH-------HHHHHHTTTCC------TTCCCTTSCCHHHHSCTTCH
T ss_pred             cCCCCCCHHHHHHHhCCHh-------HHHHHHHcCCC------CCccCCCCCCHHHHHHHHHH
Confidence            9999999998776554433       22333222110      13456789999988876654

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.4e-26  Score=230.30  Aligned_cols=206  Identities=15%  Similarity=0.145  Sum_probs=149.2

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCC------CccCCCCchhHHHHHHHcCCH-HHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGK------KRCVSFDPLALLLDASLEGEL-ELVMKTARLVKDPSAANDEGITALHNAI  354 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~------~~~~~~~g~t~Lh~Aa~~g~~-~~V~~LL~~gad~n~~d~~G~TpLh~Aa  354 (514)
                      +..++..|+++.++.||+.+....      ....+..+.++||+|+..++. .++++|++.|+++|.+|.+|+||||+||
T Consensus        15 L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~   94 (269)
T 4b93_B           15 LLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAA   94 (269)
T ss_dssp             HHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTSCCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            344788899999999999875322      334456789999999988776 4889999999999999999999999999


Q ss_pred             HcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHH
Q psy7683         355 CAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL  434 (514)
Q Consensus       355 ~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lL  434 (514)
                      ..|+.++|++|+++|++++..+..|.||||+|+..++.+++++|+++|++++.+|..|.||++++|   ..|+.+++++|
T Consensus        95 ~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~---~~g~~~~v~~L  171 (269)
T 4b93_B           95 LHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYAC---SGGHHELVALL  171 (269)
T ss_dssp             HTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH---HTTCGGGHHHH
T ss_pred             HcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---HCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999888   88999999999


Q ss_pred             HhhhhhcccccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         435 YSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       435 l~~GAd~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      +++|++++..+..|.++|+.+......+       ++.+|.+.+..      -...+..|.+|++++..
T Consensus       172 l~~gadvn~~~~~g~t~Lh~A~~~g~~~-------~v~~Ll~~Gad------~~~~d~~G~TpL~~A~~  227 (269)
T 4b93_B          172 LQHGASINASNNKGNTALHEAVIEKHVF-------VVELLLLHGAS------VQVLNKRQRTAVDCAEQ  227 (269)
T ss_dssp             HHTTCCTTCBCTTSCBHHHHHHHTTCHH-------HHHHHHHTTCC------SCCCCTTSCCSGGGSCT
T ss_pred             HHCCCCCCccccCCCcHHHHHHHcCCHH-------HHHHHHHCCCC------CCCcCCCCCCHHHHHHh
Confidence            9999999999999999998777554443       23333322110      12346678888877654

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.93  E-value=1.2e-25  Score=207.96  Aligned_cols=163  Identities=20%  Similarity=0.113  Sum_probs=149.0

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..++..|+++.++.+++.+... .+..+..|.|+||+||..|+.++|++|++.|++++.+|..|+||||+|+..|+.++
T Consensus         9 l~~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~   87 (179)
T 3f6q_A            9 IFTQCREGNAVAVRLWLDNTEND-LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDI   87 (179)
T ss_dssp             HHHHHHHTCHHHHHHHHHCTTSC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHhcCccc-ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHH
Confidence            34477889999999999986433 33456789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       362 VklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..++.+++++|+++|+++
T Consensus        88 v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~---~~~~~~~~~~L~~~g~~~  164 (179)
T 3f6q_A           88 VQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAK---APLRELLRERAEKMGQNL  164 (179)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSC---HHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHH---HHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999999999999999999999999999887   778899999999999999


Q ss_pred             ccccccc
Q psy7683         442 GILNNGA  448 (514)
Q Consensus       442 ~i~d~~g  448 (514)
                      +..+..+
T Consensus       165 ~~~~~~~  171 (179)
T 3f6q_A          165 NRIPYKD  171 (179)
T ss_dssp             SCBCCCC
T ss_pred             ccCCccc
Confidence            8766543

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.93  E-value=1.2e-25  Score=219.49  Aligned_cols=173  Identities=18%  Similarity=0.077  Sum_probs=159.9

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVK-DPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~ga-d~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      ++..|+.+.++.+++.|..  .+..+..|.|+||+|+..|+.+++++|++.|+ +++.++..|+||||+|+..|+.++++
T Consensus        64 A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  141 (253)
T 1yyh_A           64 AARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE  141 (253)
T ss_dssp             HHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHH
Confidence            6678899999999999843  33445789999999999999999999999987 89999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|+++++
T Consensus       142 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~---~~~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA---REGSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HCCCHHHHHHHHHcCCCccc
Confidence            999999999999999999999999999999999999999999999999999999887   78999999999999999999


Q ss_pred             ccccchhhhhhhhcccccc
Q psy7683         444 LNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~~e  462 (514)
                      .|..|.+++..+......+
T Consensus       219 ~d~~g~tpl~~A~~~g~~~  237 (253)
T 1yyh_A          219 TDHMDRLPRDIAQERMHHD  237 (253)
T ss_dssp             CCTTCCCHHHHHHHTTCHH
T ss_pred             cccCCCCHHHHHHHcCCHH
Confidence            9999999998777655554

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=1.1e-25  Score=220.52  Aligned_cols=172  Identities=16%  Similarity=0.083  Sum_probs=144.6

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCC-------------------------
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKD-------------------------  338 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad-------------------------  338 (514)
                      .++..|+++.++.|++.|..  .+..+..|.|+||+|+..|+.+++++|+++|++                         
T Consensus        51 ~A~~~g~~~~v~~Ll~~ga~--~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (282)
T 1oy3_D           51 LAAILGEASTVEKLYAAGAG--VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA  128 (282)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC--SSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC--------------------
T ss_pred             HHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchh
Confidence            36678899999999999843  334457899999999999999999999998765                         


Q ss_pred             ----------------------CCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCC-CCchhhhHhhcCchHHH
Q psy7683         339 ----------------------PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLHCAASCNNLAMV  395 (514)
Q Consensus       339 ----------------------~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~-G~TPLh~Aa~~g~~eiv  395 (514)
                                            ++.++..|+||||+||..|+.++|++|+++|++++..+.. |+||||+|+..|+.++|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v  208 (282)
T 1oy3_D          129 AVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVL  208 (282)
T ss_dssp             ---------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             hhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHH
Confidence                                  6778889999999999999999999999999999999865 99999999999999999


Q ss_pred             HHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         396 RFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       396 klLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      ++|+++|++++.++..|.|++++++   ..|+.+++++|+++|++++..+..|.+++........
T Consensus       209 ~~Ll~~gad~~~~d~~g~tpL~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~  270 (282)
T 1oy3_D          209 ELLLKAGADPTARMYGGRTPLGSAL---LRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD  270 (282)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHH---TSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred             HHHHHcCCCCcccccCCCCHHHHHH---HcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence            9999999999999999999999888   8899999999999999999999999999986665443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.93  E-value=1.6e-25  Score=213.89  Aligned_cols=169  Identities=21%  Similarity=0.158  Sum_probs=157.4

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+++.++.+++.|..  .+..+..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus        47 A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  124 (231)
T 3aji_A           47 ACSAGHTEIVEFLLQLGVP--VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM  124 (231)
T ss_dssp             HHHHTCHHHHHHHHHTTCC--SCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHhCCC--CCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            6678899999999998843  33455789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccc
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGIL  444 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~  444 (514)
                      |+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++..
T Consensus       125 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~  201 (231)
T 3aji_A          125 LLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC---DEERVEEAKFLVTQGASIYIE  201 (231)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHH---HCCCHHHHHHHHHCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999887   789999999999999999999


Q ss_pred             cccchhhhhhhhcc
Q psy7683         445 NNGAVYALYDYEAN  458 (514)
Q Consensus       445 d~~g~taL~d~~~~  458 (514)
                      |..|.++++.+...
T Consensus       202 ~~~g~t~l~~A~~~  215 (231)
T 3aji_A          202 NKEEKTPLQVAKGG  215 (231)
T ss_dssp             CTTSCCHHHHSCHH
T ss_pred             CCCCCCHHHHHHhh
Confidence            99999999866543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.93  E-value=3.7e-25  Score=202.96  Aligned_cols=151  Identities=27%  Similarity=0.357  Sum_probs=118.8

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      ..++..|+++.++.+++.|..  .+..+..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+||..|+.+++
T Consensus        19 ~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   96 (169)
T 2y1l_E           19 LEAARAGRDDEVRILMANGAD--VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIV   96 (169)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHH
Confidence            346677788888888887732  233456778888888888888888888888888888888888888888888888888


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhh
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ  438 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~G  438 (514)
                      ++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..|..|.|+++.++   ..|+.+++++|+++|
T Consensus        97 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~---~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E           97 EVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI---DNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHTC-
T ss_pred             HHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HhCCHHHHHHHHHcC
Confidence            8888888888888888888888888888888888888888888888888888887776   677888888887765

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.93  E-value=2.9e-25  Score=207.65  Aligned_cols=173  Identities=16%  Similarity=0.094  Sum_probs=156.3

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+.+.++.++..+... .+..+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        11 ~A~~~g~~~~v~~ll~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~   89 (201)
T 3hra_A           11 EAANQRDTKKVKEILQDTTYQ-VDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILA   89 (201)
T ss_dssp             HHHHTTCHHHHHHHHTCTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHhccHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence            366788999999999987533 3345578999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-hhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcC-cccccccCCCCchhhhhhhhhhcCc-----hhhHHHHHh
Q psy7683         364 FLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG-ACIFATTHSDHETAAVKCEEDEEGF-----EGCSEFLYS  436 (514)
Q Consensus       364 lLL-~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~G-Adin~~d~~g~t~l~~aa~a~~~g~-----~~~v~lLl~  436 (514)
                      +|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++..+..|.|+++.++   ..+.     .+++++|++
T Consensus        90 ~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~---~~~~~~~~~~~~v~~Ll~  166 (201)
T 3hra_A           90 YMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAV---GLREGNQLYQDIVKLLME  166 (201)
T ss_dssp             HHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHH---HSSCCSHHHHHHHHHHHH
T ss_pred             HHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHH---HhccchhhHHHHHHHHHH
Confidence            999 567899999999999999999999999999999999 999999999999999988   4454     899999999


Q ss_pred             hhhhcccccccchhhhhhhhcccc
Q psy7683         437 VQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       437 ~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      +|++++..|..|.++++.+.....
T Consensus       167 ~ga~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          167 NGADQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             CCCCCCccCCCCCCHHHHHHHcCC
Confidence            999999999999999987665433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.93  E-value=9.1e-26  Score=204.20  Aligned_cols=152  Identities=23%  Similarity=0.316  Sum_probs=137.7

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      ..++..|+++.++.+++.|..  .+..+..|.|+||+|+. |+.+++++|+++|++++.+|..|+||||+|+..|+.+++
T Consensus        10 ~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   86 (162)
T 1ihb_A           10 ASAAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL   86 (162)
T ss_dssp             HHHHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCC--ccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            346778999999999988732  34456789999999998 999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcc-cccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC-IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAd-in~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++ ++..+..|.|++++++   ..|+.+++++|+++||+
T Consensus        87 ~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~---~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A           87 QTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR---LYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTC--
T ss_pred             HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH---HcCCHHHHHHHHHhCCC
Confidence            999999999999999999999999999999999999999998 5999999999999887   88999999999999985

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=4.4e-25  Score=209.79  Aligned_cols=172  Identities=18%  Similarity=0.072  Sum_probs=157.7

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVK-DPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~ga-d~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      ++..|+++.++.+++.|..  .+..+..|.++||+|+..|+.+++++|++.++ +++..+..|+||||+|+..|+.++++
T Consensus        32 A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  109 (223)
T 2f8y_A           32 AARYSRSDAAKRLLEASAD--ANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE  109 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHH
Confidence            6678899999999998843  33456789999999999999999999999987 89999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++.
T Consensus       110 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAA---REGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH---HHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHH---HcCCHHHHHHHHHcCCCCcc
Confidence            999999999999999999999999999999999999999999999999999999887   78999999999999999999


Q ss_pred             ccccchhhhhhhhccccc
Q psy7683         444 LNNGAVYALYDYEANNTD  461 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~~  461 (514)
                      .+..|.++++.+......
T Consensus       187 ~~~~g~t~l~~A~~~~~~  204 (223)
T 2f8y_A          187 TDHMDRLPRDIAQERMHH  204 (223)
T ss_dssp             CCTTCCCHHHHHHHTTCH
T ss_pred             ccccCCCHHHHHHHhcch
Confidence            999999998766654443

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=3.1e-25  Score=212.70  Aligned_cols=201  Identities=18%  Similarity=0.128  Sum_probs=156.5

Q ss_pred             ccCcccHHHHHHHHH----cCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChh
Q psy7683         285 DSNNQEIAEIKSALK----SGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFD  360 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~----~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~e  360 (514)
                      ++..|+++.++.+++    .+  ...+..+..|.|+||+|+..|+.+++++|++.|++++..|..|+||||+|+..|+.+
T Consensus        16 A~~~g~~~~v~~Ll~~~~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~   93 (241)
T 1k1a_A           16 AVVQGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPT   93 (241)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcC--CCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHH
Confidence            566788888888876    33  223344567889999999999999999999999999888888999999999999999


Q ss_pred             HHHHHHhhCC----CCcccCCCCCchhhhHhhcCchHHHHHHHhcCccccccc-CCCCchhhhhhhhhhcCchhhHHHHH
Q psy7683         361 IVRFLVQFGC----DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT-HSDHETAAVKCEEDEEGFEGCSEFLY  435 (514)
Q Consensus       361 iVklLL~~Ga----dvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d-~~g~t~l~~aa~a~~~g~~~~v~lLl  435 (514)
                      ++++|+++|+    +++..|..|+||||+|+..|+.+++++|+++|++++..+ ..|.|+++.++   ..|+.+++++|+
T Consensus        94 ~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll  170 (241)
T 1k1a_A           94 CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAV---ENNSLSMVQLLL  170 (241)
T ss_dssp             HHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHH---HTTCHHHHHHHH
T ss_pred             HHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHH---HcCCHHHHHHHH
Confidence            9999998887    888888899999999999999999999999999998888 67888888777   778889999999


Q ss_pred             hhhhhcccccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         436 SVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       436 ~~GAd~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      ++|++++..+..|.++|+.+......+       ++..|.+.+..      -...+..|..|.+++..
T Consensus       171 ~~g~~~~~~~~~g~t~L~~A~~~~~~~-------~v~~Ll~~ga~------~~~~~~~g~tpl~~A~~  225 (241)
T 1k1a_A          171 QHGANVNAQMYSGSSALHSASGRGLLP-------LVRTLVRSGAD------SSLKNCHNDTPLMVARS  225 (241)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHHTCHH-------HHHHHHHTTCC------TTCCCTTSCCTTTTCSS
T ss_pred             HcCCCCCCcCCCCCCHHHHHHHcCCHH-------HHHHHHhcCCC------CCCcCCCCCCHHHHHHh
Confidence            999999888888888887766544433       22333221110      12345678888877554

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.92  E-value=1.7e-25  Score=213.04  Aligned_cols=202  Identities=18%  Similarity=0.149  Sum_probs=170.0

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcC--CCCCC-CCCCCCcHHHHHHHcCChhH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLV--KDPSA-ANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~g--ad~n~-~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      ++..|+++.++.+++.+.... ...+..|.|+||+|+..|+.+++++|++.|  .+++. .+..|+||||+|+..|+.++
T Consensus         9 A~~~g~~~~v~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~   87 (228)
T 2dzn_A            9 ACMENEFFKVQELLHSKPSLL-LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV   87 (228)
T ss_dssp             HHHTTCHHHHHHHHHHCGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHH
T ss_pred             HHHhCCHHHHHHHHhcCcccc-ccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHH
Confidence            566789999999999884322 234678999999999999999999999999  45555 77899999999999999999


Q ss_pred             HHHHHhhC--CCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhh-
Q psy7683         362 VRFLVQFG--CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ-  438 (514)
Q Consensus       362 VklLL~~G--advn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~G-  438 (514)
                      +++|+++|  ++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++| 
T Consensus        88 ~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~g~  164 (228)
T 2dzn_A           88 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAA---SVGSLKLIELLCGLGK  164 (228)
T ss_dssp             HHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH---HTTCHHHHHHHHTTTC
T ss_pred             HHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHH---HcCCHHHHHHHHhcCc
Confidence            99999998  999999999999999999999999999999999999999999999999888   789999999999999 


Q ss_pred             hhcccccccchhhhhhhhcccccccccccCceEEEee-c-CCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         439 EKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLR-K-GDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       439 Ad~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~-~-~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ++++..|..|.++|+.+......+       ++..+. + +-+       ....+..|..|.+++...
T Consensus       165 ~~~~~~d~~g~t~L~~A~~~~~~~-------~v~~Ll~~~ga~-------~~~~~~~g~t~l~~A~~~  218 (228)
T 2dzn_A          165 SAVNWQDKQGWTPLFHALAEGHGD-------AAVLLVEKYGAE-------YDLVDNKGAKAEDVALNE  218 (228)
T ss_dssp             CCSCCCCTTSCCHHHHHHHTTCHH-------HHHHHHHHHCCC-------SCCBCTTSCBGGGGCSST
T ss_pred             ccccCcCCCCCCHHHHHHHcCCHH-------HHHHHHHhcCCC-------CCccCCCCCcHHHHHHHH
Confidence            999999999999998776554433       223332 1 111       123466888999887543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.92  E-value=3.6e-25  Score=201.45  Aligned_cols=151  Identities=21%  Similarity=0.258  Sum_probs=135.5

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+++.++.+++.+.... ...+..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++++
T Consensus        14 ~A~~~g~~~~v~~ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   92 (165)
T 3twr_A           14 EAAKAGDVETVKKLCTVQSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAE   92 (165)
T ss_dssp             HHHHHTCHHHHHHHCCTTTTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHcCCCCc-cccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHH
Confidence            4677899999999998764333 344567889999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhh
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE  439 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA  439 (514)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|++++++   . |+.+++++|++.||
T Consensus        93 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~---~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK---D-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC---T-TCHHHHHHHHTC--
T ss_pred             HHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh---c-CChHHHHHHhhccc
Confidence            999999999999999999999999999999999999999999999999999998864   3 88899999999886

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=5.6e-25  Score=200.56  Aligned_cols=154  Identities=23%  Similarity=0.257  Sum_probs=141.7

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+++.++.+++.+..  .+..+..|.|+||+|+..|+.+++++|+++|++++..+..|+||||+|+..|+.++++
T Consensus         9 ~A~~~g~~~~v~~ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   86 (167)
T 3v31_A            9 QLAAQGEMLYLATRIEQENV--INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVK   86 (167)
T ss_dssp             HHHHTTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHH
Confidence            36678899999999998833  4455678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      +|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++++++.
T Consensus        87 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~---~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A           87 MLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV---ALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             HHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999887   7899999999999998763

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.92  E-value=7.6e-26  Score=215.04  Aligned_cols=201  Identities=17%  Similarity=0.122  Sum_probs=165.1

Q ss_pred             ccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhh
Q psy7683         289 QEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF  368 (514)
Q Consensus       289 g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~  368 (514)
                      |+++.++.+++.|.. .....+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus         2 g~~~~i~~Ll~~g~~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   80 (223)
T 2f8y_A            2 DAPAVISDFIYQGAS-LHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN   80 (223)
T ss_dssp             ---CCEETTEETTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred             CcHHHHHHHHHcCCC-cccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            344455666666632 2333467899999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-CCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccccccc
Q psy7683         369 GC-DVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNG  447 (514)
Q Consensus       369 Ga-dvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~  447 (514)
                      |+ +++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++..+..
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~~~~~~~~  157 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAA---AVNNVDAAVVLLKNGANKDMQNNR  157 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHH---HcCCHHHHHHHHHcCCCCCCcCCC
Confidence            87 89999999999999999999999999999999999999999999999888   789999999999999999999999


Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      |.++|+.+......+       ++..+.+....      ....+..|..|.+++...++
T Consensus       158 g~t~L~~A~~~~~~~-------~v~~Ll~~ga~------~~~~~~~g~t~l~~A~~~~~  203 (223)
T 2f8y_A          158 EETPLFLAAREGSYE-------TAKVLLDHFAN------RDITDHMDRLPRDIAQERMH  203 (223)
T ss_dssp             CCCHHHHHHHHTCHH-------HHHHHHHTTCC------TTCCCTTCCCHHHHHHHTTC
T ss_pred             CcCHHHHHHHcCCHH-------HHHHHHHcCCC------CccccccCCCHHHHHHHhcc
Confidence            999998776544433       22333222110      12345678888887766554

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=3.2e-25  Score=212.28  Aligned_cols=173  Identities=23%  Similarity=0.203  Sum_probs=149.4

Q ss_pred             ccCcccHHHHHHHHHc-CCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCcHHHHHHHcCC
Q psy7683         285 DSNNQEIAEIKSALKS-GKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDP-----SAANDEGITALHNAICAGH  358 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~-g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~-----n~~d~~G~TpLh~Aa~~g~  358 (514)
                      ++..|+++.++.+++. |.  ..+..+..|.|+||+|+..|+.++|++|++.|+++     +.+|..|+||||+||..|+
T Consensus        10 A~~~g~~~~v~~Ll~~~g~--~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~   87 (232)
T 2rfa_A           10 AAKENDVQALSKLLKFEGC--EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQN   87 (232)
T ss_dssp             HHHTTCHHHHHHHHTTTCS--CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHhcCC--CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCC
Confidence            5667899999999987 42  23344678999999999999999999999999886     6778899999999999999


Q ss_pred             hhHHHHHHhhCCCCcccCC-------------CCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhc
Q psy7683         359 FDIVRFLVQFGCDVNAQDS-------------DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEE  425 (514)
Q Consensus       359 ~eiVklLL~~Gadvn~~D~-------------~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~  425 (514)
                      .+++++|+++|++++..+.             .|+||||+|+..|+.+++++|+++|++++.+|..|.|++++++   ..
T Consensus        88 ~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~---~~  164 (232)
T 2rfa_A           88 VNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILI---LQ  164 (232)
T ss_dssp             HHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---TC
T ss_pred             HHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---Hc
Confidence            9999999999999998766             7999999999999999999999999999999999999999887   77


Q ss_pred             CchhhH----HHHHhhhhhc------ccccccchhhhhhhhcccccc
Q psy7683         426 GFEGCS----EFLYSVQEKL------GILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       426 g~~~~v----~lLl~~GAd~------~i~d~~g~taL~d~~~~~~~e  462 (514)
                      |+.+++    ++|+++|++.      +..|..|.++|+.+......+
T Consensus       165 ~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~  211 (232)
T 2rfa_A          165 PNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIV  211 (232)
T ss_dssp             SCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHH
T ss_pred             CChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHH
Confidence            888887    9999999988      578888999987666544433

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=1.9e-25  Score=208.57  Aligned_cols=149  Identities=20%  Similarity=0.146  Sum_probs=135.2

Q ss_pred             cCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHh
Q psy7683         308 CVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA  387 (514)
Q Consensus       308 ~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa  387 (514)
                      ..+..|.|+||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus        30 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  109 (192)
T 2rfm_A           30 YRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSI  109 (192)
T ss_dssp             CCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhccc
Q psy7683         388 SCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANN  459 (514)
Q Consensus       388 ~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~  459 (514)
                      ..|+.+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++|++++..|..|.++++.+....
T Consensus       110 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~  178 (192)
T 2rfm_A          110 IFGYSEMSYFLLEHGANVNDRNLEGETPLIVAS---KYGRSEIVKKLLELGADISARDLTGLTAEASARIFG  178 (192)
T ss_dssp             HHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHH---HHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhC
Confidence            999999999999999999999999999998887   788999999999999999999999999987665443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.92  E-value=1.9e-25  Score=213.84  Aligned_cols=189  Identities=18%  Similarity=0.144  Sum_probs=154.8

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCC-----cccCCCCCchhhh
Q psy7683         312 DPLALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV-----NAQDSDGWMPLHC  385 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadv-----n~~D~~G~TPLh~  385 (514)
                      .|.|+||+|+..|+.++|++|++. |++++.+|..|+||||+||..|+.++|++|+++|+++     +..|..|+||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            478999999999999999999998 9999999999999999999999999999999999987     6778899999999


Q ss_pred             HhhcCchHHHHHHHhcCcccccccC-------------CCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhh
Q psy7683         386 AASCNNLAMVRFLVEHGACIFATTH-------------SDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYAL  452 (514)
Q Consensus       386 Aa~~g~~eivklLL~~GAdin~~d~-------------~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL  452 (514)
                      |+..|+.+++++|+++|++++..+.             .|.|+++.++   ..|+.+++++|+++|++++..|..|.++|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L  158 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAA---CVGSEEIVRLLIEHGADIRAQDSLGNTVL  158 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHH---HHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHH---HcCCHHHHHHHHHCCCCCCCCCCCCCCHH
Confidence            9999999999999999999999876             6899998887   78999999999999999999999999999


Q ss_pred             hhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         453 YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       453 ~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      +.+......+...   .++..+.+.+.......+....+..|.+|.+++...++
T Consensus       159 ~~A~~~~~~~~~~---~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~  209 (232)
T 2rfa_A          159 HILILQPNKTFAC---QMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGN  209 (232)
T ss_dssp             HHHHTCSCHHHHH---HHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHcCChHHHH---HHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCC
Confidence            8777654443210   01122222111100011113567789999988876554

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.92  E-value=5.7e-25  Score=201.68  Aligned_cols=148  Identities=28%  Similarity=0.269  Sum_probs=139.0

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhc
Q psy7683         310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       310 ~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~  389 (514)
                      ...+.++|++|+..|+.++|++|+++|++++.+|..|+||||+||..|+.+++++|+++|++++..|..|+||||+|+..
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~   90 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF   90 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         390 NNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       390 g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      |+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++..|..|.++++.+.....
T Consensus        91 ~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  158 (169)
T 2y1l_E           91 GHLEIVEVLLKNGADVNANDMEGHTPLHLAA---MFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN  158 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence            9999999999999999999999999999888   7899999999999999999999999999986665443

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=5.4e-25  Score=219.58  Aligned_cols=199  Identities=21%  Similarity=0.235  Sum_probs=168.2

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+++.++.+++.|..  .+..+..|.|+||+|+..|+.++|++|++.|++++.+|..|+||||+|+..|+.++++
T Consensus        65 ~Aa~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~  142 (285)
T 3d9h_A           65 EAAIHGHQLSLRNLISQGWA--VNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVN  142 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC--SCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC--CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHH
Confidence            36778899999999998843  4455678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|++++..+ .|.||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|++.|++++.
T Consensus       143 ~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~  218 (285)
T 3d9h_A          143 LLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLAC---ENQQRACVKKLLESGADVNQ  218 (285)
T ss_dssp             HHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHH---HTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH---HcCcHHHHHHHHHCCCCCCC
Confidence            9999999998654 5999999999999999999999999999999999999999887   88999999999999999985


Q ss_pred             ccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                       +..|.++|+.+......+       ++..|.+.+.      -....+..|..|.+++.
T Consensus       219 -~~~g~t~L~~A~~~~~~~-------~v~~Ll~~ga------d~~~~d~~g~t~l~~A~  263 (285)
T 3d9h_A          219 -GKGQDSPLHAVVRTASEE-------LACLLMDFGA------DTQAKNAEGKRPVELVP  263 (285)
T ss_dssp             -CBTTBCHHHHHHHTTCHH-------HHHHHHHTTC------CTTCCCTTSCCGGGGSC
T ss_pred             -CCCCCCHHHHHHHcCCHH-------HHHHHHHCCC------CCCCcCCCCCCHHHHhc
Confidence             778889988766554433       2333332211      01345678999998875

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.92  E-value=1.2e-25  Score=203.69  Aligned_cols=141  Identities=19%  Similarity=0.177  Sum_probs=120.5

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCc-hhhhHh
Q psy7683         309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWM-PLHCAA  387 (514)
Q Consensus       309 ~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~T-PLh~Aa  387 (514)
                      .+..+.++||+|+..|+.++|++|+++|++++.+|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAA   86 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHH
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence            4567899999999999999999999999999999999999999986 99999999999999999999999999 999999


Q ss_pred             hcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhh
Q psy7683         388 SCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALY  453 (514)
Q Consensus       388 ~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~  453 (514)
                      ..|+.+++++|+++|++++.++..|.|++++++   ..|+.+++++|+++|++++..+..|.++..
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE---ELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHH---HHTCHHHHHHHSSCC---------------
T ss_pred             HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH---HhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            999999999999999999999999999999888   789999999999999999999998888765

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.92  E-value=3.1e-25  Score=196.49  Aligned_cols=131  Identities=21%  Similarity=0.204  Sum_probs=125.0

Q ss_pred             CccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCC-CCchhh
Q psy7683         306 KRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLH  384 (514)
Q Consensus       306 ~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~-G~TPLh  384 (514)
                      .+..+..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+||. |+.+++++|+++|++++.+|.. |+||||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~   83 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVH   83 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHH
Confidence            34456789999999999999999999999999999999999999999999 9999999999999999999999 999999


Q ss_pred             hHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         385 CAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       385 ~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      +|+..|+.+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++|+|
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~---~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           84 DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE---EQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH---HHTCHHHHHHHHHHHCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH---HcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999888   78999999999999985

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=5e-25  Score=200.88  Aligned_cols=146  Identities=16%  Similarity=0.151  Sum_probs=138.4

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      .|.|+||.|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         392 LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       392 ~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      .+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++..+..|.+++..+.....
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  147 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYDWNGGTPLLYAV---HGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGY  147 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCCCCCcCCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCc
Confidence            99999999999999999999999999888   7899999999999999999999999999876654433

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.92  E-value=1.1e-24  Score=196.22  Aligned_cols=144  Identities=24%  Similarity=0.258  Sum_probs=121.3

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+++.++.+++.|....   .+..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus         9 A~~~g~~~~v~~Ll~~g~~~~---~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~   85 (153)
T 1awc_B            9 AARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV   85 (153)
T ss_dssp             HHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCCC---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHH
Confidence            566788888888888875332   35678888888888888888888888888888888888888888888888888888


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHH
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL  434 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lL  434 (514)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|
T Consensus        86 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~i~~~L  152 (153)
T 1awc_B           86 LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI---DNGNEDLAEIL  152 (153)
T ss_dssp             HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHH
T ss_pred             HHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH---HcCCHHHHHHh
Confidence            88888888888888888888888888888888888888888888888888888776   77888888876

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.92  E-value=5.5e-25  Score=219.47  Aligned_cols=207  Identities=16%  Similarity=0.179  Sum_probs=157.1

Q ss_pred             CCcccCcccHHHHHHHHHcCC---------CCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGK---------LGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHN  352 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~---------~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~  352 (514)
                      +..++..|+..++..++..+.         .......+..|.|+||+|+..|+.++|++|++.|++++.+|..|+||||+
T Consensus        19 lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~   98 (285)
T 3d9h_A           19 SHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHE   98 (285)
T ss_dssp             -----------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHH
T ss_pred             HHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            444777788888877665531         12234567889999999999999999999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHH
Q psy7683         353 AICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSE  432 (514)
Q Consensus       353 Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~  432 (514)
                      ||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+ .|.|+++.++   ..|+.++++
T Consensus        99 A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~---~~g~~~~v~  174 (285)
T 3d9h_A           99 ACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAA---RRGHVECVN  174 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHH---HHTCHHHHH
T ss_pred             HHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHH---HcCCHHHHH
Confidence            999999999999999999999999999999999999999999999999999998754 5899998887   789999999


Q ss_pred             HHHhhhhhcccccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         433 FLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       433 lLl~~GAd~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      +|+++|++++..+..|.++|+.+......+       ++..+.+.+..   .-    .+..|..|++++...++
T Consensus       175 ~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~-------~v~~Ll~~ga~---~~----~~~~g~t~L~~A~~~~~  234 (285)
T 3d9h_A          175 SLIAYGGNIDHKISHLGTPLYLACENQQRA-------CVKKLLESGAD---VN----QGKGQDSPLHAVVRTAS  234 (285)
T ss_dssp             HHHHTTCCTTCCBTTTBCHHHHHHHTTCHH-------HHHHHHHTTCC---TT----CCBTTBCHHHHHHHTTC
T ss_pred             HHHHCCCCCCCcCCCCCCHHHHHHHcCcHH-------HHHHHHHCCCC---CC----CCCCCCCHHHHHHHcCC
Confidence            999999999999999999998776554443       23333322111   11    25678889888766554

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.92  E-value=1.1e-24  Score=208.92  Aligned_cols=171  Identities=20%  Similarity=0.181  Sum_probs=156.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCC----CCCCCCCCCCcHHHHHHHcCChh
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFD  360 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~ga----d~n~~d~~G~TpLh~Aa~~g~~e  360 (514)
                      ++..++.+.++.+++.|...  ...+..|.++||+|+..|+.+++++|++.++    +++..|..|+||||+|+..|+.+
T Consensus        53 A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  130 (241)
T 1k1a_A           53 AVITTLPSVVRLLVTAGASP--MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQE  130 (241)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT--TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHcCCHHHHHHHHHcCCCc--cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHH
Confidence            56678999999999988432  3345789999999999999999999999987    88999999999999999999999


Q ss_pred             HHHHHHhhCCCCcccC-CCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhh
Q psy7683         361 IVRFLVQFGCDVNAQD-SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE  439 (514)
Q Consensus       361 iVklLL~~Gadvn~~D-~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA  439 (514)
                      ++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|+
T Consensus       131 ~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~ga  207 (241)
T 1k1a_A          131 TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS---GRGLLPLVRTLVRSGA  207 (241)
T ss_dssp             HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH---HHTCHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcCCHHHHHHHHhcCC
Confidence            9999999999999999 88999999999999999999999999999999999999999887   7899999999999999


Q ss_pred             hcccccccchhhhhhhhcccc
Q psy7683         440 KLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       440 d~~i~d~~g~taL~d~~~~~~  460 (514)
                      +++..|..|.++++.+.....
T Consensus       208 ~~~~~~~~g~tpl~~A~~~~~  228 (241)
T 1k1a_A          208 DSSLKNCHNDTPLMVARSRRV  228 (241)
T ss_dssp             CTTCCCTTSCCTTTTCSSHHH
T ss_pred             CCCCcCCCCCCHHHHHHhcCc
Confidence            999999999999876654433

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.92  E-value=6.3e-26  Score=218.39  Aligned_cols=174  Identities=17%  Similarity=0.073  Sum_probs=139.3

Q ss_pred             ccCcccHHHHHHHHHcCCC--CCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         285 DSNNQEIAEIKSALKSGKL--GKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~--~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      ++..|+.+.++.+++.+..  ...+..+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+||..|+.+++
T Consensus        15 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v   94 (236)
T 1ikn_D           15 AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASV   94 (236)
T ss_dssp             HHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            4445555556666655432  13444566788999999999999999999999999999888999999999999999999


Q ss_pred             HHHHhhCCC------CcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccC-CCCchhhhhhhhhhcCchhhHHHHH
Q psy7683         363 RFLVQFGCD------VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTH-SDHETAAVKCEEDEEGFEGCSEFLY  435 (514)
Q Consensus       363 klLL~~Gad------vn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~-~g~t~l~~aa~a~~~g~~~~v~lLl  435 (514)
                      ++|+++|++      ++..|..|+||||+|+..|+.+++++|+++|++++..+. .|.|++++++   ..|+.+++++|+
T Consensus        95 ~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~---~~~~~~~v~~Ll  171 (236)
T 1ikn_D           95 GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV---DLQNPDLVSLLL  171 (236)
T ss_dssp             HHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH---HTTCHHHHHHHH
T ss_pred             HHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHH---HcCCHHHHHHHH
Confidence            999988876      567788899999999999999999999999999998887 8888888877   778899999999


Q ss_pred             hhhhhcccccccchhhhhhhhccccc
Q psy7683         436 SVQEKLGILNNGAVYALYDYEANNTD  461 (514)
Q Consensus       436 ~~GAd~~i~d~~g~taL~d~~~~~~~  461 (514)
                      ++|++++..+..|.++++.+......
T Consensus       172 ~~ga~~~~~~~~g~tpl~~A~~~~~~  197 (236)
T 1ikn_D          172 KCGADVNRVTYQGYSPYQLTWGRPST  197 (236)
T ss_dssp             TTTCCSCCCCTTCCCGGGGCTTSSCH
T ss_pred             HcCCCCCcccCCCCCHHHHHHccCch
Confidence            99999998888888888766554443

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.92  E-value=1.7e-24  Score=207.67  Aligned_cols=170  Identities=21%  Similarity=0.231  Sum_probs=156.8

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLV-KDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~g-ad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      +...++++.++.+++.|..  ....+..|.++||+|+..|+.+++++|++.| ++++..+..|+||||+|+..|+.++++
T Consensus        51 A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~  128 (237)
T 3b7b_A           51 AAENNHLEAVKYLIKAGAL--VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK  128 (237)
T ss_dssp             HHHTTCHHHHHHHHTTTCC--CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHhCCHHHHHHHHhCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHH
Confidence            5667899999999998843  2334568999999999999999999999998 899999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++.
T Consensus       129 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA---RENRYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH---HTTCHHHHHHHHTTTCCTTC
T ss_pred             HHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HhCCHhHHHHHHHcCCCCCc
Confidence            999999999999999999999999999999999999999999999999999999887   78999999999999999999


Q ss_pred             ccccchhhhhhhhccc
Q psy7683         444 LNNGAVYALYDYEANN  459 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~  459 (514)
                      .|..|.++++.+....
T Consensus       206 ~d~~g~t~l~~A~~~~  221 (237)
T 3b7b_A          206 KNKEGETPLQCASLNS  221 (237)
T ss_dssp             CCTTSCCHHHHSCTTC
T ss_pred             cCCCCCCHHHHHHHHH
Confidence            9999999998665443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=1.8e-24  Score=211.26  Aligned_cols=167  Identities=17%  Similarity=0.152  Sum_probs=81.3

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+.+.++.+++.|...  ...+..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus        46 A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~  123 (285)
T 1wdy_A           46 AVQMSREDIVELLLRHGADP--VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKF  123 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCC--cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHH
Confidence            33444455555555444211  1122344455555555555555555555555555555555555555555555555555


Q ss_pred             HHhhCCCCccc----------CCCCCchhhhHhhcCchHHHHHHHhc-CcccccccCCCCchhhhhhhhhhcCc----hh
Q psy7683         365 LVQFGCDVNAQ----------DSDGWMPLHCAASCNNLAMVRFLVEH-GACIFATTHSDHETAAVKCEEDEEGF----EG  429 (514)
Q Consensus       365 LL~~Gadvn~~----------D~~G~TPLh~Aa~~g~~eivklLL~~-GAdin~~d~~g~t~l~~aa~a~~~g~----~~  429 (514)
                      |+++|++++..          +..|.||||+|+..|+.+++++|+++ |++++..+..|.++++.++   ..++    .+
T Consensus       124 Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~---~~~~~~~~~~  200 (285)
T 1wdy_A          124 LYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHAL---LSSDDSDVEA  200 (285)
T ss_dssp             HHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHH---HCSCTTTHHH
T ss_pred             HHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHH---HccccchHHH
Confidence            55555554444          44455555555555555555555544 5555555555555554444   2333    44


Q ss_pred             hHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         430 CSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       430 ~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      ++++|+++|++++..+..|.++|+.+.
T Consensus       201 i~~~Ll~~g~~~~~~~~~g~t~L~~A~  227 (285)
T 1wdy_A          201 ITHLLLDHGADVNVRGERGKTPLILAV  227 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHH
T ss_pred             HHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            555555555555555555555554433

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.92  E-value=6.2e-25  Score=218.00  Aligned_cols=205  Identities=26%  Similarity=0.361  Sum_probs=163.9

Q ss_pred             ccCcccHHHHHHHHHcCCCCC-------CccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q psy7683         285 DSNNQEIAEIKSALKSGKLGK-------KRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAG  357 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~-------~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g  357 (514)
                      ++..+..+.++.++.......       ....+..+.++||+||..|+.++|++|++.|++++..|..|+||||+||..|
T Consensus         5 ~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g   84 (299)
T 1s70_B            5 DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDD   84 (299)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHccccccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcC
Confidence            345567778888887653211       1222456889999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhh-----------------
Q psy7683         358 HFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKC-----------------  420 (514)
Q Consensus       358 ~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa-----------------  420 (514)
                      +.++|++|+++|++++..|..|+||||+|+..|+.++|++|+++|++++..+..|.|+++.++                 
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~  164 (299)
T 1s70_B           85 NVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV  164 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999988877666654432                 


Q ss_pred             ----------------------------------------hhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         421 ----------------------------------------EEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       421 ----------------------------------------~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                                                              .++..|+.+++++|+++|++++..|..|.++|+.+.....
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~  244 (299)
T 1s70_B          165 DIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGK  244 (299)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             CchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCC
Confidence                                                    1236788999999999999999999999999987765544


Q ss_pred             cccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         461 DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       461 ~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                      .+       ++.+|.+.+.      -....+..|.+|.+++.
T Consensus       245 ~~-------~v~~Ll~~ga------d~~~~d~~g~t~l~~A~  273 (299)
T 1s70_B          245 EE-------ACRILVENLC------DMEAVNKVGQTAFDVAD  273 (299)
T ss_dssp             HH-------HHHHHHHTTC------CTTCCCTTSCCTTTSCC
T ss_pred             HH-------HHHHHHHcCC------CCCCcCCCCCCHHHHHH
Confidence            43       2333333211      01235677888887653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.91  E-value=1.2e-24  Score=223.22  Aligned_cols=169  Identities=15%  Similarity=0.153  Sum_probs=136.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHc----CCCCCC-----------------CC
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARL----VKDPSA-----------------AN  343 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~----gad~n~-----------------~d  343 (514)
                      ++..|+++.++.|++.|.    ......|.|+||+|+..|+.++|++|++.    |++++.                 .|
T Consensus        60 A~~~g~~~~v~~Ll~~g~----~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (364)
T 3ljn_A           60 ACKFGCVDTAKYLASVGE----VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKH  135 (364)
T ss_dssp             HHHHCCHHHHHHHHHHCC----CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEE
T ss_pred             HHHcCCHHHHHHHHHCCC----CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCC
Confidence            455666666666666664    11123566666666666666666666666    555544                 77


Q ss_pred             CCCCcHHHHHHHcC--ChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcc-----cccccCCCCchh
Q psy7683         344 DEGITALHNAICAG--HFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC-----IFATTHSDHETA  416 (514)
Q Consensus       344 ~~G~TpLh~Aa~~g--~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAd-----in~~d~~g~t~l  416 (514)
                      ..|+||||+||..|  +.++|++|+++|++++..|..|+||||+|+..|+.++|++|+++|++     ++..+..|.|++
T Consensus       136 ~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L  215 (364)
T 3ljn_A          136 CKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL  215 (364)
T ss_dssp             ESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT
T ss_pred             CCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH
Confidence            78999999999999  99999999999999999999999999999999999999999999998     999999999999


Q ss_pred             hhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         417 AVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       417 ~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      ++++   ..|+.+++++|+++|++++..|..|.++|+.+.....
T Consensus       216 ~~A~---~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~  256 (364)
T 3ljn_A          216 HWAI---LINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAM  256 (364)
T ss_dssp             HHHH---TTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCC
T ss_pred             HHHH---HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCh
Confidence            9887   7899999999999999999999999999987665443

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.91  E-value=1.3e-24  Score=219.04  Aligned_cols=168  Identities=18%  Similarity=0.175  Sum_probs=96.0

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+++.++.+++.|..  .+..+..|.|+||+|+..|+.++|++|+++|++++..|..|+||||+|+..|+.+++++
T Consensus        65 A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  142 (351)
T 3utm_A           65 AAGYNRVRIVQLLLQHGAD--VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSL  142 (351)
T ss_dssp             HHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC--CCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            4445555555555555522  22233455556666666666666666666666655555556666666666666666666


Q ss_pred             HHhhCCCCcccC------------------------------------------------------CCCCchhhhHhhc-
Q psy7683         365 LVQFGCDVNAQD------------------------------------------------------SDGWMPLHCAASC-  389 (514)
Q Consensus       365 LL~~Gadvn~~D------------------------------------------------------~~G~TPLh~Aa~~-  389 (514)
                      |+++|++++..+                                                      ..|.||||+|+.. 
T Consensus       143 Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~  222 (351)
T 3utm_A          143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASL  222 (351)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCC
T ss_pred             HHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHh
Confidence            666655554433                                                      2344555555555 


Q ss_pred             --CchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhc
Q psy7683         390 --NNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEA  457 (514)
Q Consensus       390 --g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~  457 (514)
                        +..+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++..|..|.++|+.+..
T Consensus       223 ~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~  289 (351)
T 3utm_A          223 HPKRKQVAELLLRKGANVNEKNKDFMTPLHVAA---ERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL  289 (351)
T ss_dssp             STTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHH---HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence              3355666666666666666666666666555   5566666666666666666666666666655443

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.91  E-value=1.7e-24  Score=194.96  Aligned_cols=144  Identities=22%  Similarity=0.169  Sum_probs=135.4

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCch
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNL  392 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~  392 (514)
                      ..++||.|+..|+.++|++|++.|++++ .+..|+||||+||..|+.+++++|+++|++++..|..|+||||+|+..|+.
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence            4589999999999999999999999887 588899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         393 AMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       393 eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      +++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++..+..|.++++.+.....
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWAT---EHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            9999999999999999999999999888   7899999999999999999999999999987665443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.91  E-value=1.9e-24  Score=201.79  Aligned_cols=150  Identities=19%  Similarity=0.149  Sum_probs=139.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+.+.++.+++.|..  .+..+..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus        42 A~~~g~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~  119 (192)
T 2rfm_A           42 ACMLGMENAIDKLVENFDK--LEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYF  119 (192)
T ss_dssp             HHHHTCGGGHHHHHHHHCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhccc--cccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHH
Confidence            5667888999999998743  33455689999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhh
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE  439 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA  439 (514)
                      |+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++|.
T Consensus       120 Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          120 LLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR---IFGRQEVIKIFTEVRR  191 (192)
T ss_dssp             HHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH---HTTCHHHHHHHHHHHH
T ss_pred             HHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH---HhCcHHHHHHHHhccC
Confidence            99999999999999999999999999999999999999999999999999999887   8899999999999873

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=4e-25  Score=208.37  Aligned_cols=162  Identities=10%  Similarity=0.057  Sum_probs=141.8

Q ss_pred             hhcCCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHH
Q psy7683         279 INSSPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGEL----ELVMKTARLVKDPSAANDEGITALHNAI  354 (514)
Q Consensus       279 l~~~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~----~~V~~LL~~gad~n~~d~~G~TpLh~Aa  354 (514)
                      +..+..++..|+++.++.++..+...   ..+..|+|+||+|+..|+.    +++++||++|+++|.+|..|+||||+|+
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKGYED---KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHSSSC---HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcCccc---ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            34455577889999999999887321   1225689999999999975    5999999999999999999999999999


Q ss_pred             HcCC------hhHHHHHHhhCCCCcccCCCCC-chhhhHhhcC-----chHHHHHHHh-cCcccccccCCCCchhhhhhh
Q psy7683         355 CAGH------FDIVRFLVQFGCDVNAQDSDGW-MPLHCAASCN-----NLAMVRFLVE-HGACIFATTHSDHETAAVKCE  421 (514)
Q Consensus       355 ~~g~------~eiVklLL~~Gadvn~~D~~G~-TPLh~Aa~~g-----~~eivklLL~-~GAdin~~d~~g~t~l~~aa~  421 (514)
                      ..|+      .++|++|+++|+++|.+|..|+ ||||+|+..+     +.+++++|++ +|++++.+|..|.|++++++ 
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~-  162 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK-  162 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH-
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHH-
Confidence            9987      5789999999999999999999 9999999954     4579999999 99999999999999999887 


Q ss_pred             hhhcCchhhHHHHHhhhhhcccccc
Q psy7683         422 EDEEGFEGCSEFLYSVQEKLGILNN  446 (514)
Q Consensus       422 a~~~g~~~~v~lLl~~GAd~~i~d~  446 (514)
                        ..|+.+++++|+++..++++.++
T Consensus       163 --~~~~~~~v~~L~~~~~~~~~~~~  185 (186)
T 3t8k_A          163 --RCQKPIALKMMEDYIKKYNLKEN  185 (186)
T ss_dssp             --TTTCHHHHHHHHHHHHHHTCCC-
T ss_pred             --HcCCHHHHHHHHHHHHHHhcccC
Confidence              88999999999999988877664

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.91  E-value=2.6e-24  Score=216.79  Aligned_cols=124  Identities=24%  Similarity=0.273  Sum_probs=76.0

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+++.++.++...... .+..+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+||..|+.++|+
T Consensus        30 ~A~~~g~~~~v~~ll~~~~~~-~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~  108 (351)
T 3utm_A           30 EAARSGNEEKLMALLTPLNVN-CHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTE  108 (351)
T ss_dssp             HHHHHTCHHHHHHHCCTTTTT-CCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHhcCCC-cccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHH
Confidence            355566666666666543222 2223345666666666666666666666666666666666666666666666666666


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT  408 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~  408 (514)
                      +|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..
T Consensus       109 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  153 (351)
T 3utm_A          109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV  153 (351)
T ss_dssp             HHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            666666666666666666666666666666666666666665543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=2.3e-24  Score=218.70  Aligned_cols=212  Identities=16%  Similarity=0.133  Sum_probs=167.0

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCC---------------------
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPS---------------------  340 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n---------------------  340 (514)
                      +..++.+|+++.|+.||+.|.... ...+..|+||||+||..|+.++|++||++|++++                     
T Consensus        29 L~~Av~~g~~~~V~~LL~~Gadvn-~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~  107 (337)
T 4g8k_A           29 LIKAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKL  107 (337)
T ss_dssp             HHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchh
Confidence            445788999999999999984322 2233568999999999999999999999988654                     


Q ss_pred             ------------CCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCccc----------CCCCCchhhhHhhcCchHHHHHH
Q psy7683         341 ------------AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ----------DSDGWMPLHCAASCNNLAMVRFL  398 (514)
Q Consensus       341 ------------~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~----------D~~G~TPLh~Aa~~g~~eivklL  398 (514)
                                  ..|..|+||||+|+..|+.+++++|+++|++++..          +..|.||||+|+..|+.++|++|
T Consensus       108 ~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~L  187 (337)
T 4g8k_A          108 LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKIL  187 (337)
T ss_dssp             HHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHH
T ss_pred             hHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHH
Confidence                        45678999999999999999999999999998764          34689999999999999999999


Q ss_pred             Hh-cCcccccccCCCCchhhhhhhhhhcC-chhhHHHHHhhhhhcccccccchhhhhhhhcccccccccccCceEEEeec
Q psy7683         399 VE-HGACIFATTHSDHETAAVKCEEDEEG-FEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRK  476 (514)
Q Consensus       399 L~-~GAdin~~d~~g~t~l~~aa~a~~~g-~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~  476 (514)
                      |+ .|++++..+..|.++++.++.....+ ...++++|+++|++++..+..|.++|+.+......+.       +..+..
T Consensus       188 L~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~-------v~~Ll~  260 (337)
T 4g8k_A          188 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL-------VQRLLE  260 (337)
T ss_dssp             HHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHH-------HHHHHT
T ss_pred             HhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHH-------HHHHHH
Confidence            96 59999999999999998877554443 3568899999999999999999999987765544432       122221


Q ss_pred             CCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         477 GDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       477 ~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ...     ......+..|.+|++++...++
T Consensus       261 ~~~-----~~vn~~d~~G~TpL~~A~~~g~  285 (337)
T 4g8k_A          261 QEH-----IEINDTDSDGKTALLLAVELKL  285 (337)
T ss_dssp             STT-----CCTTCBCTTSCBHHHHHHHTTC
T ss_pred             hcC-----CcccCcCCCCCCHHHHHHHcCC
Confidence            100     0012345688999988877665

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.91  E-value=3.7e-24  Score=192.68  Aligned_cols=148  Identities=19%  Similarity=0.312  Sum_probs=130.6

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+++.++.+++.. ....+..+..|.|+||+ +..|+.+++++|+++|++++.+|..|+||||+||..|+.++++
T Consensus         8 ~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   85 (156)
T 1bd8_A            8 GAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLK   85 (156)
T ss_dssp             HHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHhh-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence            366778999999999883 23344456778999999 8899999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++ ++++..+..|.|++++++   ..|+.+++++|+++
T Consensus        86 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~---~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A           86 VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELAL---QRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHH---HSCCHHHHHHHHTT
T ss_pred             HHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHH---HcCcHHHHHHHHhh
Confidence            99999999999999999999999999999999999999 999999999999998887   78999999999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=2.3e-24  Score=190.79  Aligned_cols=126  Identities=31%  Similarity=0.379  Sum_probs=120.6

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhc
Q psy7683         310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       310 ~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~  389 (514)
                      ...+.++||+|+..|+.++|++|+++|++++.+|..|+||||+||..|+.+++++|+++|++++..|..|+||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhh
Q psy7683         390 NNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ  438 (514)
Q Consensus       390 g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~G  438 (514)
                      |+.+++++|+++|++++..|..|.|++++++   ..|+.+++++|+++|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~---~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQDKFGKTAFDISI---GNGNEDLAEILQKLN  136 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHcCCCCcCcCCCCCCHHHHHH---HCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999887   889999999999876

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.91  E-value=9.2e-25  Score=212.82  Aligned_cols=177  Identities=21%  Similarity=0.184  Sum_probs=143.7

Q ss_pred             ccCcccHHHH----HHHHHcCCCCCC--ccCCCCchhHHHHHHHc---CCHHHHHHHHHcCCCCCCC-----------CC
Q psy7683         285 DSNNQEIAEI----KSALKSGKLGKK--RCVSFDPLALLLDASLE---GELELVMKTARLVKDPSAA-----------ND  344 (514)
Q Consensus       285 ~~~~g~i~~i----k~lL~~g~~~~~--~~~~~~g~t~Lh~Aa~~---g~~~~V~~LL~~gad~n~~-----------d~  344 (514)
                      ++..|+++.+    +.+++.|.....  ...+..|.|+||+|+..   |+.++|++|++.|++++..           |.
T Consensus         9 A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~   88 (256)
T 2etb_A            9 VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFY   88 (256)
T ss_dssp             HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTT
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccc
Confidence            4455666543    444445532111  02467899999999999   9999999999998877633           36


Q ss_pred             CCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCC-------------CCchhhhHhhcCchHHHHHHHh---cCcccccc
Q psy7683         345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-------------GWMPLHCAASCNNLAMVRFLVE---HGACIFAT  408 (514)
Q Consensus       345 ~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~-------------G~TPLh~Aa~~g~~eivklLL~---~GAdin~~  408 (514)
                      .|+||||+||..|+.++|++|+++|++++..|..             |+||||+|+..|+.+++++|++   +|++++.+
T Consensus        89 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~  168 (256)
T 2etb_A           89 QGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT  168 (256)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCC
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCcc
Confidence            7999999999999999999999999999999886             9999999999999999999999   99999999


Q ss_pred             cCCCCchhhhhhhhhhcCchh-------hHHHHHhhhhhc-------ccccccchhhhhhhhcccccc
Q psy7683         409 THSDHETAAVKCEEDEEGFEG-------CSEFLYSVQEKL-------GILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       409 d~~g~t~l~~aa~a~~~g~~~-------~v~lLl~~GAd~-------~i~d~~g~taL~d~~~~~~~e  462 (514)
                      |..|.|++++++.. ..++.+       ++++|+++|+++       +..|..|.++|+.+......+
T Consensus       169 d~~g~TpLh~A~~~-~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~  235 (256)
T 2etb_A          169 DSLGNTVLHALVMI-ADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIE  235 (256)
T ss_dssp             CTTSCCHHHHHHHH-CCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCCCCCHHHHHHHc-ccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHH
Confidence            99999999988731 267777       999999999999       889999999998766554433

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.91  E-value=2.5e-24  Score=197.14  Aligned_cols=145  Identities=18%  Similarity=0.179  Sum_probs=135.6

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKD-PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad-~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      +.++||.|+..|+.+++++|++.+.+ ++.+|..|+||||+||..|+.++|++|+++|++++..|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGY   81 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCC
Confidence            45789999999999999999999887 88999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         392 LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       392 ~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      .+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++|++++..+..|.++++.+.....
T Consensus        82 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  147 (172)
T 3v30_A           82 TDIVGLLLERDVDINIYDWNGGTPLLYAV---RGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY  147 (172)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc
Confidence            99999999999999999999999999988   7899999999999999999999999999977665443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.91  E-value=1.6e-24  Score=216.30  Aligned_cols=164  Identities=15%  Similarity=0.116  Sum_probs=103.1

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+++.++.+++.|.....    .+|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+||..|+.++|++
T Consensus        38 A~~~g~~~~v~~Ll~~g~~~~~----~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~  113 (285)
T 3kea_A           38 AIADNNVRLVCTLLNAGALKNL----LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKL  113 (285)
T ss_dssp             HHHTTCHHHHHHHHHTTGGGSC----CTTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHhCCCCCCC----CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHH
Confidence            4555666666666666522111    135666666666666666666666666666666666666666666666666666


Q ss_pred             HHhhCCCCcccCCCC-CchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         365 LVQFGCDVNAQDSDG-WMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       365 LL~~Gadvn~~D~~G-~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      |+++|++++..|..| .||||+|+..|+.+++++|+++|+++... ..|.|+++.++   ..|+.+++++|+++|++++.
T Consensus       114 Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~---~~g~~~~v~~Ll~~gad~n~  189 (285)
T 3kea_A          114 FVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITI---KNGHVDMMILLLDYMTSTNT  189 (285)
T ss_dssp             HHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHH---HTTCHHHHHHHHHHHHHTCT
T ss_pred             HHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHH---HcChHHHHHHHHHcCCCCCc
Confidence            666666666666666 56666666666666666666666655222 14555555554   56666777777777777766


Q ss_pred             ccccchhh-hhhhh
Q psy7683         444 LNNGAVYA-LYDYE  456 (514)
Q Consensus       444 ~d~~g~ta-L~d~~  456 (514)
                      .+..|.++ |+.+.
T Consensus       190 ~~~~g~t~~L~~A~  203 (285)
T 3kea_A          190 NNSLLFIPDIKLAI  203 (285)
T ss_dssp             TCCCBCCTTHHHHH
T ss_pred             ccCCCCChHHHHHH
Confidence            66666665 44333

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.91  E-value=6e-24  Score=182.96  Aligned_cols=126  Identities=30%  Similarity=0.418  Sum_probs=122.0

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      +|.|+||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         392 LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       392 ~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      .+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++
T Consensus        81 ~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~---~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKDKNGRTPLHLAA---RNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHcCCCCcccCCCCCCHHHHHH---HcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999999887   78999999999999985

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.91  E-value=3.5e-24  Score=198.00  Aligned_cols=144  Identities=22%  Similarity=0.206  Sum_probs=134.6

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcC
Q psy7683         312 DPLALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN  390 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g  390 (514)
                      .+.++||.||..|+.++|++|++. +.+++..|..|+||||+||..|+.++|++|+++|++++..|..|+||||+|+..|
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            567889999999999999999998 6789999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcc
Q psy7683         391 NLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       391 ~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~  458 (514)
                      +.+++++|+++|++++..|..|.|+++.++   ..|+.+++++|+++|++++..|..|.+++..+...
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~  148 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYAC---FWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAP  148 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHH
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHH---HcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHH
Confidence            999999999999999999999999999988   78999999999999999999999999999766543

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.91  E-value=2.6e-24  Score=194.54  Aligned_cols=145  Identities=23%  Similarity=0.183  Sum_probs=136.2

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      ...++||+|+..|+.+++++|++.|++++.+|..|+||||+|+. |+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   82 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGF   82 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCC
Confidence            46799999999999999999999999999999999999999999 99999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh-cccccccchhhhhhhhcccc
Q psy7683         392 LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK-LGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       392 ~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd-~~i~d~~g~taL~d~~~~~~  460 (514)
                      .+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++ ++..+..|.++++.+.....
T Consensus        83 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~  149 (162)
T 1ihb_A           83 LDTLQTLLEFQADVNIEDNEGNLPLHLAA---KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR  149 (162)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence            99999999999999999999999999888   78999999999999998 58999999999987665443

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.91  E-value=9.3e-24  Score=206.12  Aligned_cols=171  Identities=19%  Similarity=0.195  Sum_probs=152.0

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..|+++.++.+++.|.... ...+..|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.++++
T Consensus        11 ~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~   89 (285)
T 1wdy_A           11 KAVQNEDVDLVQQLLEGGANVN-FQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK   89 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCcc-cccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            3667889999999999884322 223567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccc----------cCCCCchhhhhhhhhhcCchhhHHH
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT----------THSDHETAAVKCEEDEEGFEGCSEF  433 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~----------d~~g~t~l~~aa~a~~~g~~~~v~l  433 (514)
                      +|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..          +..|.++++.++   ..|+.+++++
T Consensus        90 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~---~~~~~~~v~~  166 (285)
T 1wdy_A           90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA---EKGHVEVLKI  166 (285)
T ss_dssp             HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH---HHTCHHHHHH
T ss_pred             HHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH---HcCCHHHHHH
Confidence            999999999999999999999999999999999999999999887          677889988887   7899999999


Q ss_pred             HHhh-hhhcccccccchhhhhhhhcc
Q psy7683         434 LYSV-QEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       434 Ll~~-GAd~~i~d~~g~taL~d~~~~  458 (514)
                      |++. |++++..+..|.++++.+...
T Consensus       167 Ll~~~~~~~~~~~~~g~t~l~~a~~~  192 (285)
T 1wdy_A          167 LLDEMGADVNACDNMGRNALIHALLS  192 (285)
T ss_dssp             HHHTSCCCTTCCCTTSCCHHHHHHHC
T ss_pred             HHHhcCCCCCccCCCCCCHHHHHHHc
Confidence            9987 999999999999988765543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.91  E-value=3.8e-24  Score=194.67  Aligned_cols=145  Identities=23%  Similarity=0.275  Sum_probs=135.7

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhh
Q psy7683         310 SFDPLALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS  388 (514)
Q Consensus       310 ~~~g~t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~  388 (514)
                      +..+.++||.|+..|+.++|++|++. +.+++..+..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A            5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHH
Confidence            35688999999999999999999985 56788888899999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhc
Q psy7683         389 CNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEA  457 (514)
Q Consensus       389 ~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~  457 (514)
                      .|+.+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++|++++..|..|.+++..+..
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~  150 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAA---AKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD  150 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc
Confidence            99999999999999999999999999999888   7899999999999999999999999999876443

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=7.5e-24  Score=222.20  Aligned_cols=167  Identities=22%  Similarity=0.296  Sum_probs=101.7

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..++++.++.+++.|..  .+..+..|.|+||+|+..|+.++|++|+++|++++..+..|+||||+|+..|+.+++++
T Consensus       219 A~~~~~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~  296 (437)
T 1n11_A          219 AAKQNQVEVARSLLQYGGS--ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV  296 (437)
T ss_dssp             HHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHH
Confidence            3445555666666655532  22233455666666666666666666666666666666666666666666666666666


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccc
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGIL  444 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~  444 (514)
                      |+++|++++..|..|+||||+|+..|+.++|++|+++|++++.++..|.|+++.++   ..|+.+++++|+++|++++..
T Consensus       297 Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~---~~g~~~iv~~Ll~~ga~~~~~  373 (437)
T 1n11_A          297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAA---QQGHTDIVTLLLKNGASPNEV  373 (437)
T ss_dssp             HHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHH---HCChHHHHHHHHHCcCCCCCC
Confidence            66666666666666666666666666666666666666666666666666666555   556666666666666666666


Q ss_pred             cccchhhhhhhh
Q psy7683         445 NNGAVYALYDYE  456 (514)
Q Consensus       445 d~~g~taL~d~~  456 (514)
                      |..|.+++..+.
T Consensus       374 ~~~g~t~l~~A~  385 (437)
T 1n11_A          374 SSDGTTPLAIAK  385 (437)
T ss_dssp             CSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHH
Confidence            666666655443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.90  E-value=5.2e-24  Score=204.94  Aligned_cols=163  Identities=23%  Similarity=0.173  Sum_probs=145.8

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCC------CCCCCCCCCcHHHHHHHcCC
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKD------PSAANDEGITALHNAICAGH  358 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad------~n~~d~~G~TpLh~Aa~~g~  358 (514)
                      ++..++.+.++.+++.|..  .+..+..|.|+||+|+..|+.+++++|++.|++      ++..+..|+||||+|+..|+
T Consensus        52 A~~~~~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  129 (236)
T 1ikn_D           52 AVITNQPEIAEALLGAGCD--PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY  129 (236)
T ss_dssp             HHHTTCHHHHHCCCSCCCC--SCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCC
Confidence            5667889999999988733  333557899999999999999999999999876      46778889999999999999


Q ss_pred             hhHHHHHHhhCCCCcccCC-CCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         359 FDIVRFLVQFGCDVNAQDS-DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       359 ~eiVklLL~~Gadvn~~D~-~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      .++|++|+++|++++.+|. .|+||||+|+..|+.+++++|+++|++++..+..|.|++++++   ..|+.+++++|+++
T Consensus       130 ~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~---~~~~~~~~~~Ll~~  206 (236)
T 1ikn_D          130 LGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW---GRPSTRIQQQLGQL  206 (236)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCT---TSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHH---ccCchHHHHHHHHc
Confidence            9999999999999999998 9999999999999999999999999999999999999999888   88999999999999


Q ss_pred             hhhcc--cccccchhhh
Q psy7683         438 QEKLG--ILNNGAVYAL  452 (514)
Q Consensus       438 GAd~~--i~d~~g~taL  452 (514)
                      |++..  +.+..+.++.
T Consensus       207 ga~~~~~~~~~~~~~~~  223 (236)
T 1ikn_D          207 TLENLQMLPESEDEESY  223 (236)
T ss_dssp             SCGGGSSCCCCCTTTCC
T ss_pred             chhhhhcCCccchHHHH
Confidence            99876  5565555544

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.90  E-value=9.1e-24  Score=221.55  Aligned_cols=172  Identities=20%  Similarity=0.231  Sum_probs=157.9

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .+...++.+.++.+++.|...  ...+..|.++||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.++|+
T Consensus       185 ~A~~~~~~~~v~~Ll~~g~~~--~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~  262 (437)
T 1n11_A          185 VAVHHNNLDIVKLLLPRGGSP--HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVA  262 (437)
T ss_dssp             HHHHTTCHHHHHHHGGGTCCS--CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCC--CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHH
Confidence            366778999999999988532  334567999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI  443 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i  443 (514)
                      +|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|+++.++   ..|+.+++++|+++|++++.
T Consensus       263 ~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~---~~g~~~~v~~Ll~~gad~n~  339 (437)
T 1n11_A          263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS---HYGNIKLVKFLLQHQADVNA  339 (437)
T ss_dssp             HHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHH---HSSCSHHHHHHHHTTCCTTC
T ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHH---HcCcHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999887   78999999999999999999


Q ss_pred             ccccchhhhhhhhcccc
Q psy7683         444 LNNGAVYALYDYEANNT  460 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~  460 (514)
                      .+..|.++|+.+.....
T Consensus       340 ~~~~g~t~L~~A~~~g~  356 (437)
T 1n11_A          340 KTKLGYSPLHQAAQQGH  356 (437)
T ss_dssp             CCTTSCCHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHCCh
Confidence            99999999986664433

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.90  E-value=9.6e-25  Score=217.13  Aligned_cols=176  Identities=11%  Similarity=0.074  Sum_probs=156.2

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHH-----Hc
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVK-DPSAANDEGITALHNAI-----CA  356 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~ga-d~n~~d~~G~TpLh~Aa-----~~  356 (514)
                      ..+...+.++.++.++..+.....+..+..|.|+||+||..|+.++|++|++.|+ +++..|..|+||||+|+     ..
T Consensus        81 ~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~  160 (276)
T 4hbd_A           81 HPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ  160 (276)
T ss_dssp             CHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh
Confidence            3445677777787777665332344566789999999999999999999999998 99999999999999999     56


Q ss_pred             CChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         357 GHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       357 g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      ++.+++++|++.|++++..|..|+||||+|+..|+.++|++|+++|++++.+|..|.|++++++   ..|+.+++++|++
T Consensus       161 ~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~---~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          161 DDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCAC---EHGHKEIAGLLLA  237 (276)
T ss_dssp             HHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HHTCHHHHHHHHT
T ss_pred             hhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHH---HCCCHHHHHHHHh
Confidence            8899999999999999999999999999999999999999999999999999999999999988   7899999999999


Q ss_pred             -hhhhcccccccchhhhhhhhccccc
Q psy7683         437 -VQEKLGILNNGAVYALYDYEANNTD  461 (514)
Q Consensus       437 -~GAd~~i~d~~g~taL~d~~~~~~~  461 (514)
                       .|++++..|..|.++|+.+......
T Consensus       238 ~~gad~~~~d~~g~TpL~~A~~~g~~  263 (276)
T 4hbd_A          238 VPSCDISLTDRDGSTALMVALDAGQS  263 (276)
T ss_dssp             STTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             cCCCCCcCcCCCCCCHHHHHHHcCCH
Confidence             8999999999999999876654433

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=1.8e-24  Score=210.90  Aligned_cols=173  Identities=21%  Similarity=0.140  Sum_probs=117.7

Q ss_pred             ccCcccHHHHHHHHH----cCCCCCCc--cCCCCchhHHHHHH---HcCCHHHHHHHHHcCCC-----------CCCCCC
Q psy7683         285 DSNNQEIAEIKSALK----SGKLGKKR--CVSFDPLALLLDAS---LEGELELVMKTARLVKD-----------PSAAND  344 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~----~g~~~~~~--~~~~~g~t~Lh~Aa---~~g~~~~V~~LL~~gad-----------~n~~d~  344 (514)
                      ++..|+++.++.+++    .+......  ..+..|.|+||+|+   ..|+.++|++|++.|++           ++..|.
T Consensus        12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~   91 (260)
T 3jxi_A           12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYY   91 (260)
T ss_dssp             HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSE
T ss_pred             HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhccccccccc
Confidence            445566665444444    44222211  12355777888777   56777888888777643           333445


Q ss_pred             CCCcHHHHHHHcCChhHHHHHHhhCCCCcccC--------------CCCCchhhhHhhcCchHHHHHHHh---cCccccc
Q psy7683         345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQD--------------SDGWMPLHCAASCNNLAMVRFLVE---HGACIFA  407 (514)
Q Consensus       345 ~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D--------------~~G~TPLh~Aa~~g~~eivklLL~---~GAdin~  407 (514)
                      .|+||||+||..|+.++|++|+++|++++..|              ..|+||||+|+..|+.++|++|++   +|++++.
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~  171 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRR  171 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcc
Confidence            67788888888888888888888888877777              567788888888888888888887   7778877


Q ss_pred             ccCCCCchhhhhhhhhhcCc---------hhhHHHHHhhhhhc-------ccccccchhhhhhhhcccc
Q psy7683         408 TTHSDHETAAVKCEEDEEGF---------EGCSEFLYSVQEKL-------GILNNGAVYALYDYEANNT  460 (514)
Q Consensus       408 ~d~~g~t~l~~aa~a~~~g~---------~~~v~lLl~~GAd~-------~i~d~~g~taL~d~~~~~~  460 (514)
                      +|..|.|++++++   ..|+         .+++++|+++|+++       +..|..|.++|+.+.....
T Consensus       172 ~d~~g~TpLh~A~---~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~  237 (260)
T 3jxi_A          172 QDSRGNTVLHALV---AIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK  237 (260)
T ss_dssp             CCTTSCCHHHHHH---HHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred             cCCCCCcHHHHHH---HhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence            7777777777776   3333         57777788888777       5677777777766554443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=6.7e-24  Score=208.92  Aligned_cols=158  Identities=22%  Similarity=0.202  Sum_probs=135.1

Q ss_pred             cccHHHHHHHHHcCCC--------CC-CccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCC--------------
Q psy7683         288 NQEIAEIKSALKSGKL--------GK-KRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAND--------------  344 (514)
Q Consensus       288 ~g~i~~ik~lL~~g~~--------~~-~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~--------------  344 (514)
                      .|+.+.++.|++.|..        +. ....+..|.|+||+|+..|+.++|++|+++|++++.++.              
T Consensus        67 ~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~  146 (273)
T 2pnn_A           67 NGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFY  146 (273)
T ss_dssp             TTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCC
T ss_pred             cCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccccccccccc
Confidence            4888999999988631        11 122346899999999999999999999999999999987              


Q ss_pred             CCCcHHHHHHHcCChhHHHHHHh---hCCCCcccCCCCCchhhhHhhcCc---------hHHHHHHHhcCcccc------
Q psy7683         345 EGITALHNAICAGHFDIVRFLVQ---FGCDVNAQDSDGWMPLHCAASCNN---------LAMVRFLVEHGACIF------  406 (514)
Q Consensus       345 ~G~TpLh~Aa~~g~~eiVklLL~---~Gadvn~~D~~G~TPLh~Aa~~g~---------~eivklLL~~GAdin------  406 (514)
                      .|+||||+||..|+.++|++|++   +|++++.+|..|+||||+|+..|+         .+++++|+++|++++      
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~  226 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE  226 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence            79999999999999999999999   999999999999999999999988         799999999999997      


Q ss_pred             -cccCCCCchhhhhhhhhhcCchhhHHHHHhhhh-hcccccccc
Q psy7683         407 -ATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE-KLGILNNGA  448 (514)
Q Consensus       407 -~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA-d~~i~d~~g  448 (514)
                       ..|..|.|++++++   ..|+.+++++|+++|+ +.......+
T Consensus       227 ~~~d~~g~TpL~~A~---~~g~~~iv~~Ll~~ga~dp~~~~~~~  267 (273)
T 2pnn_A          227 EITNRKGLTPLALAA---SSGKIGVLAYILQREIHEPECRHAAA  267 (273)
T ss_dssp             GCCCTTSCCHHHHHH---HTTCHHHHHHHHHHHTC---------
T ss_pred             cccCCCCCCHHHHHH---HhChHHHHHHHHHCCCCCchhhhhhh
Confidence             48999999999887   8899999999999999 666555443

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.90  E-value=4.4e-24  Score=208.18  Aligned_cols=154  Identities=18%  Similarity=0.092  Sum_probs=138.6

Q ss_pred             cCcccHHHHHHHHHcCCC---------CCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC-------------
Q psy7683         286 SNNQEIAEIKSALKSGKL---------GKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAN-------------  343 (514)
Q Consensus       286 ~~~g~i~~ik~lL~~g~~---------~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d-------------  343 (514)
                      ...|+.+.++.+++.|..         ......+..|.|+||+||..|+.++|++|+++|++++.++             
T Consensus        57 ~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~  136 (260)
T 3jxi_A           57 LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGY  136 (260)
T ss_dssp             CBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCS
T ss_pred             hhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCccccccc
Confidence            367888999999987621         1223334589999999999999999999999999999998             


Q ss_pred             -CCCCcHHHHHHHcCChhHHHHHHh---hCCCCcccCCCCCchhhhHhhcCc---------hHHHHHHHhcCccc-----
Q psy7683         344 -DEGITALHNAICAGHFDIVRFLVQ---FGCDVNAQDSDGWMPLHCAASCNN---------LAMVRFLVEHGACI-----  405 (514)
Q Consensus       344 -~~G~TpLh~Aa~~g~~eiVklLL~---~Gadvn~~D~~G~TPLh~Aa~~g~---------~eivklLL~~GAdi-----  405 (514)
                       ..|+||||+||..|+.++|++|++   +|++++.+|..|+||||+|+..++         .+++++|+++|+++     
T Consensus       137 ~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~  216 (260)
T 3jxi_A          137 FYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTN  216 (260)
T ss_dssp             CCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCC
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccc
Confidence             689999999999999999999999   999999999999999999998887         69999999999999     


Q ss_pred             --ccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         406 --FATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       406 --n~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                        +..|..|.|++++++   ..|+.+++++|+++|++..
T Consensus       217 ~~~~~d~~g~tpL~~A~---~~g~~~~v~~Ll~~g~~~~  252 (260)
T 3jxi_A          217 LEALLNNDGLSPLMMAA---KTGKIGIFQHIIRREIADA  252 (260)
T ss_dssp             GGGCCCTTSCCHHHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCCCHHHHHH---HcCCHHHHHHHHHhCCCcc
Confidence              779999999999988   8899999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=199.80  Aligned_cols=206  Identities=16%  Similarity=0.130  Sum_probs=158.1

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCC-CCCcHHHHHHHcCChhHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAND-EGITALHNAICAGHFDIV  362 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~-~G~TpLh~Aa~~g~~eiV  362 (514)
                      .++..|+++.++.+++.|..  .+..+..|.++||+|+..|+.++|++|++.|++++..+. .|+||||+|+..|+.+++
T Consensus        15 ~A~~~g~~~~~~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v   92 (240)
T 3eu9_A           15 KATQYGIYERCRELVEAGYD--VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMV   92 (240)
T ss_dssp             HHHHTTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHH
T ss_pred             HHHHcCChHHHHHHHHcCCC--cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHH
Confidence            36678889999999988733  334456788999999999999999999999888876554 488999999999999999


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      ++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..+..|.++++.++  ...+..+++++|++.|++++
T Consensus        93 ~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~~L~~~~~~~~  170 (240)
T 3eu9_A           93 VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAA--YRTHSVDPTRLLLTFNVSVN  170 (240)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH--HHCCSSTTHHHHHHTTCCTT
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHH--HhCChHHHHHHHHhcCCCcc
Confidence            9999999999999999999999999999999999999999999998888888888877  23444788999999999988


Q ss_pred             cccc-cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         443 ILNN-GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       443 i~d~-~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+. .|.++|+.+......+       ++..+.+.+.      -....+..|..|.+++...++
T Consensus       171 ~~~~~~g~t~L~~A~~~~~~~-------~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~~~~  222 (240)
T 3eu9_A          171 LGDKYHKNTALHWAVLAGNTT-------VISLLLEAGA------NVDAQNIKGESALDLAKQRKN  222 (240)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHH-------HHHHHHHHTC------CTTCBCTTSCBHHHHHHHTTC
T ss_pred             hhhccCCCcHHHHHHHcCCHH-------HHHHHHHcCC------CCCCcCCCCCCHHHHHHHcCc
Confidence            8886 7888887666544333       2222222110      012345678888887776654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.90  E-value=4.1e-24  Score=213.39  Aligned_cols=155  Identities=12%  Similarity=-0.008  Sum_probs=94.1

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC-CcHHHHHHHcCChhHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEG-ITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G-~TpLh~Aa~~g~~eiVk  363 (514)
                      ++..|+.+.++.+++.|..  .+..+..|.|+||+|+..|+.++|++|+++|++++.++..| .||||+|+..|+.++++
T Consensus        69 A~~~g~~~~v~~Ll~~ga~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~  146 (285)
T 3kea_A           69 AATLEDTKIVKILLFSGLD--DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVS  146 (285)
T ss_dssp             HTTSSSCHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCC--CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHH
Confidence            4455666666666666532  12233456666666666666666666666666666666666 56666666666666666


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCch-hhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHET-AAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~-l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      +|+++|+++... ..|+||||+|+..|+.+++++|+++|++++..+..|.|+ +++++   ..|+.+++++|+++|++++
T Consensus       147 ~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~---~~~~~~~v~~Ll~~gad~~  222 (285)
T 3kea_A          147 YFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAI---DNKDIEMLQALFKYDINIY  222 (285)
T ss_dssp             HHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHH---HHTCHHHHHHHTTSCBCST
T ss_pred             HHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHH---HcCCHHHHHHHHHcCCCCC
Confidence            666666655221 156666666666666666666666666666666666665 44443   5566666666666666666


Q ss_pred             ccc
Q psy7683         443 ILN  445 (514)
Q Consensus       443 i~d  445 (514)
                      ..+
T Consensus       223 ~~~  225 (285)
T 3kea_A          223 SAN  225 (285)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            555

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.90  E-value=9.9e-25  Score=214.87  Aligned_cols=175  Identities=25%  Similarity=0.213  Sum_probs=147.4

Q ss_pred             ccCcccHHHHHHHHHcC---CCCCC---ccCCCCchhHHHHHHHc---CCHHHHHHHHHcCCCC-------CC----CCC
Q psy7683         285 DSNNQEIAEIKSALKSG---KLGKK---RCVSFDPLALLLDASLE---GELELVMKTARLVKDP-------SA----AND  344 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g---~~~~~---~~~~~~g~t~Lh~Aa~~---g~~~~V~~LL~~gad~-------n~----~d~  344 (514)
                      ++..|+++.++.+++.+   .....   ...+..|.|+||+||..   |+.++|++|++.|+++       +.    .|.
T Consensus        20 A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~   99 (273)
T 2pnn_A           20 AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYY   99 (273)
T ss_dssp             HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTT
T ss_pred             HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccC
Confidence            56677777777777642   11111   13467899999999987   9999999999998653       22    567


Q ss_pred             CCCcHHHHHHHcCChhHHHHHHhhCCCCcccCC--------------CCCchhhhHhhcCchHHHHHHHh---cCccccc
Q psy7683         345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDS--------------DGWMPLHCAASCNNLAMVRFLVE---HGACIFA  407 (514)
Q Consensus       345 ~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~--------------~G~TPLh~Aa~~g~~eivklLL~---~GAdin~  407 (514)
                      .|+||||+||..|+.++|++|+++|++++..+.              .|+||||+|+..|+.+++++|++   +|++++.
T Consensus       100 ~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~  179 (273)
T 2pnn_A          100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISA  179 (273)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCcee
Confidence            899999999999999999999999999999987              79999999999999999999999   9999999


Q ss_pred             ccCCCCchhhhhhhhhhcCc---------hhhHHHHHhhhhhcc-------cccccchhhhhhhhcccccc
Q psy7683         408 TTHSDHETAAVKCEEDEEGF---------EGCSEFLYSVQEKLG-------ILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       408 ~d~~g~t~l~~aa~a~~~g~---------~~~v~lLl~~GAd~~-------i~d~~g~taL~d~~~~~~~e  462 (514)
                      +|..|.|++++++   ..|+         .+++++|+++|++++       +.|..|.++|+.+......+
T Consensus       180 ~d~~g~tpLh~A~---~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~  247 (273)
T 2pnn_A          180 RDSVGNTVLHALV---EVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIG  247 (273)
T ss_dssp             CCTTSCCHHHHHH---HHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHH
T ss_pred             eCCCCCcHHHHHH---HccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHH
Confidence            9999999999988   5555         789999999999996       58999999998776554443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.90  E-value=4.9e-24  Score=218.55  Aligned_cols=205  Identities=18%  Similarity=0.103  Sum_probs=172.8

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..++..|+++.++.+++.|..  .+..+..|.|+||+||..|+.++|++|++.|++++.  ..|+||||+|+..|+.++
T Consensus        24 L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~g~~~~   99 (364)
T 3ljn_A           24 IHVAARKGQTDEVRRLIETGVS--PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMANKTDL   99 (364)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC--TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCC--ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHcCCHHH
Confidence            4447889999999999999833  344567899999999999999999999999996654  479999999999999999


Q ss_pred             HHHHHhh----CCCCcc-----------------cCCCCCchhhhHhhcC--chHHHHHHHhcCcccccccCCCCchhhh
Q psy7683         362 VRFLVQF----GCDVNA-----------------QDSDGWMPLHCAASCN--NLAMVRFLVEHGACIFATTHSDHETAAV  418 (514)
Q Consensus       362 VklLL~~----Gadvn~-----------------~D~~G~TPLh~Aa~~g--~~eivklLL~~GAdin~~d~~g~t~l~~  418 (514)
                      |++|+++    |++++.                 .|..|.||||+|+..|  +.++|++|+++|++++..+..|.|++++
T Consensus       100 v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~  179 (364)
T 3ljn_A          100 VVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR  179 (364)
T ss_dssp             HHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            9999998    888887                 8999999999999999  9999999999999999999999999998


Q ss_pred             hhhhhhcCchhhHHHHHhhhhh-----cccccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCC
Q psy7683         419 KCEEDEEGFEGCSEFLYSVQEK-----LGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE  493 (514)
Q Consensus       419 aa~a~~~g~~~~v~lLl~~GAd-----~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~  493 (514)
                      ++   ..|+.+++++|+++|++     ++..+..|.++|+.+......+       ++.+|.+.+..      ....+..
T Consensus       180 A~---~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~-------~v~~Ll~~gad------~~~~d~~  243 (364)
T 3ljn_A          180 AM---EFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWED-------VAMRFVEMGID------VNMEDNE  243 (364)
T ss_dssp             HH---HTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHH-------HHHHHHTTTCC------TTCCCTT
T ss_pred             HH---HcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHH-------HHHHHHHcCCC------CCCCCCC
Confidence            88   88999999999999999     9999999999998777554443       33333332110      1345678


Q ss_pred             CCchhhhhhcCCC
Q psy7683         494 GYVPRNLLGLYPR  506 (514)
Q Consensus       494 G~~P~~~l~~~~~  506 (514)
                      |..|++++...++
T Consensus       244 g~tpL~~A~~~g~  256 (364)
T 3ljn_A          244 HTVPLYLSVRAAM  256 (364)
T ss_dssp             SCCHHHHHHHTCC
T ss_pred             CCCHHHHHHHhCh
Confidence            8899988776654

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=6.3e-24  Score=216.32  Aligned_cols=145  Identities=14%  Similarity=0.019  Sum_probs=134.9

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCC---hhHHHHHHhhC-CCCcccCCCCCchhh
Q psy7683         309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGH---FDIVRFLVQFG-CDVNAQDSDGWMPLH  384 (514)
Q Consensus       309 ~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~---~eiVklLL~~G-advn~~D~~G~TPLh  384 (514)
                      .+..|.||||+||..|+.++|++||++|++++.+|..|+||||+||..|+   .++++.|++++ ++++.+|..|+||||
T Consensus       127 ~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh  206 (327)
T 1sw6_A          127 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  206 (327)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHH
Confidence            56789999999999999999999999999999999999999999999999   78999999886 789999999999999


Q ss_pred             hHhh----cCchHHHHHHHhcCc---------------------------------------------ccccccCCCCch
Q psy7683         385 CAAS----CNNLAMVRFLVEHGA---------------------------------------------CIFATTHSDHET  415 (514)
Q Consensus       385 ~Aa~----~g~~eivklLL~~GA---------------------------------------------din~~d~~g~t~  415 (514)
                      +|+.    .|+.+++++|++.++                                             +++.+|..|.|+
T Consensus       207 ~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~Tp  286 (327)
T 1sw6_A          207 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  286 (327)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCH
Confidence            9999    899999999998854                                             578888899999


Q ss_pred             hhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         416 AAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       416 l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      +++++   ..|+.+++++|+++|+++++.|..|.++|+.+.
T Consensus       287 Lh~A~---~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  324 (327)
T 1sw6_A          287 LNIAA---RLGNISIVDALLDYGADPFIANKSGLRPVDFGA  324 (327)
T ss_dssp             HHHHH---HHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHH---HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            99888   789999999999999999999999999997654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.90  E-value=9.9e-24  Score=205.48  Aligned_cols=151  Identities=20%  Similarity=0.113  Sum_probs=136.7

Q ss_pred             ccHHHHHHHHHcCCCCC-C--------ccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC-------------C
Q psy7683         289 QEIAEIKSALKSGKLGK-K--------RCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDE-------------G  346 (514)
Q Consensus       289 g~i~~ik~lL~~g~~~~-~--------~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~-------------G  346 (514)
                      |+.+.++.|++.|.... .        ...+..|.|+||+|+..|+.++|++|+++|++++.++..             |
T Consensus        57 g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           57 GVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             TBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSC
T ss_pred             chHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCC
Confidence            88889999998873221 1        122357999999999999999999999999999999876             9


Q ss_pred             CcHHHHHHHcCChhHHHHHHh---hCCCCcccCCCCCchhhhHhh--cCchH-------HHHHHHhcCccc-------cc
Q psy7683         347 ITALHNAICAGHFDIVRFLVQ---FGCDVNAQDSDGWMPLHCAAS--CNNLA-------MVRFLVEHGACI-------FA  407 (514)
Q Consensus       347 ~TpLh~Aa~~g~~eiVklLL~---~Gadvn~~D~~G~TPLh~Aa~--~g~~e-------ivklLL~~GAdi-------n~  407 (514)
                      +||||+||..|+.++|++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|+++|+++       +.
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  216 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEI  216 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccc
Confidence            999999999999999999999   999999999999999999998  78888       999999999999       99


Q ss_pred             ccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         408 TTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       408 ~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      +|..|.|++++++   ..|+.+++++|+++|++..
T Consensus       217 ~d~~g~tpL~~A~---~~g~~~~v~~Ll~~g~~~~  248 (256)
T 2etb_A          217 SNHQGLTPLKLAA---KEGKIEIFRHILQREFSGA  248 (256)
T ss_dssp             CCTTSCCHHHHHH---HTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCHHHHHH---HhCCHHHHHHHHhCCCCCC
Confidence            9999999999888   8899999999999998764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.89  E-value=2.8e-23  Score=194.14  Aligned_cols=185  Identities=15%  Similarity=0.150  Sum_probs=153.9

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCC-CCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhc
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVK-DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~ga-d~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~  389 (514)
                      ..+.++||.|+..|+.++|+.|+..+. +++..|..|+||||+||..|+.++|++|+++|++++..|..|+||||+|+..
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~   82 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ   82 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence            457899999999999999999999876 9999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHH-hcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhh-hhcccccccchhhhhhhhccccccccccc
Q psy7683         390 NNLAMVRFLV-EHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ-EKLGILNNGAVYALYDYEANNTDELSFKT  467 (514)
Q Consensus       390 g~~eivklLL-~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~G-Ad~~i~d~~g~taL~d~~~~~~~eL~~k~  467 (514)
                      |+.+++++|+ ..+++++..+..|.++++.++   ..|+.+++++|+++| ++++..+..|.++|+.+.........  .
T Consensus        83 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~--~  157 (201)
T 3hra_A           83 GRTEILAYMLKHATPDLNKHNRYGGNALIPAA---EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQL--Y  157 (201)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH---HTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHH--H
T ss_pred             CCHHHHHHHHhccCcccccccCCCCcHHHHHH---HcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhh--H
Confidence            9999999999 567799999999999999887   789999999999999 99999999999999877644331000  0


Q ss_pred             CceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         468 GECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       468 g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      -+++..+.+.+.      -....+..|..|.+++...++
T Consensus       158 ~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~~~~  190 (201)
T 3hra_A          158 QDIVKLLMENGA------DQSIKDNSGRTAMDYANQKGY  190 (201)
T ss_dssp             HHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHHTC
T ss_pred             HHHHHHHHHCCC------CCCccCCCCCCHHHHHHHcCC
Confidence            012233322211      012356789999988876554

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.89  E-value=2.8e-23  Score=186.90  Aligned_cols=143  Identities=25%  Similarity=0.260  Sum_probs=134.4

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         313 PLALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      +.++||+|+..|+.+++++|++. +.+++..|..|+||||+ |..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   80 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence            56899999999999999999999 44899999999999999 99999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         392 LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       392 ~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      .+++++|+++|++++..+..|.|+++.++   ..|+.+++++|++. ++++..|..|.++++.+.....
T Consensus        81 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~  145 (156)
T 1bd8_A           81 LDTLKVLVEHGADVNVPDGTGALPIHLAV---QEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHH---HHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCcHHHHHH---HhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc
Confidence            99999999999999999999999999988   78999999999999 9999999999999987665443

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=3.9e-24  Score=207.54  Aligned_cols=170  Identities=14%  Similarity=0.043  Sum_probs=146.9

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      ..++..|+++.++.+++.|..  .+..+..|.|+||+||..|+.++|++|++.|++++.+|..|+||||+||..|+.++|
T Consensus        26 ~~A~~~g~~~~v~~Ll~~g~~--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v  103 (229)
T 2vge_A           26 LDAALTGELEVVQQAVKEMND--PSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVIC  103 (229)
T ss_dssp             HHHHHHTCHHHHHHHHHHSSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            337778999999999998842  344567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCcccC-CCCCchhhhH--hhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhh
Q psy7683         363 RFLVQFGCDVNAQD-SDGWMPLHCA--ASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE  439 (514)
Q Consensus       363 klLL~~Gadvn~~D-~~G~TPLh~A--a~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA  439 (514)
                      ++|+++|++++..+ ..|+||||+|  +..|+.+++++|+++|++++..+..+.++++.++   .   ...+++|++.|+
T Consensus       104 ~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~---~---~~~~~~ll~~ga  177 (229)
T 2vge_A          104 MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS---A---EFGDELSFREGE  177 (229)
T ss_dssp             HHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBC---C---SSTTBCCBCTTC
T ss_pred             HHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHh---h---ccccccCccccc
Confidence            99999999999987 6999999999  9999999999999999999999987777776554   1   234468899999


Q ss_pred             h--cccccccchhhhhhhhcccc
Q psy7683         440 K--LGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       440 d--~~i~d~~g~taL~d~~~~~~  460 (514)
                      +  ++..|..|.++|+.+.....
T Consensus       178 ~~~~~~~d~~G~TpL~~A~~~g~  200 (229)
T 2vge_A          178 SVTVLRRDGPEETDWWWAALHGQ  200 (229)
T ss_dssp             EEEEEESSCTTCSSEEEEEETTE
T ss_pred             cccccccCCCcccHHHHHHHcCC
Confidence            8  56678888888876655433

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.89  E-value=1.6e-23  Score=185.16  Aligned_cols=128  Identities=24%  Similarity=0.266  Sum_probs=117.3

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhh
Q psy7683         309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS  388 (514)
Q Consensus       309 ~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~  388 (514)
                      .+..|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhh
Q psy7683         389 CNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE  439 (514)
Q Consensus       389 ~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA  439 (514)
                      .|+.+++++|+++|++++..|..|.|++++++   ..+..+++++|.+.+.
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~---~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           86 NGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD---DESMKSLLLLPEKNES  133 (137)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCC---CHHHHHHHSCC-----
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHh---hccHHHHHhhcccccc
Confidence            99999999999999999999999999999887   6777888877766543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.89  E-value=7e-23  Score=195.14  Aligned_cols=174  Identities=21%  Similarity=0.212  Sum_probs=156.0

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      .++..++++.++.+++.|..... ..+..|.++||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+.++++
T Consensus        48 ~A~~~~~~~~v~~Ll~~~~~~~~-~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~  126 (240)
T 3eu9_A           48 WAAINNRIDLVKYYISKGAIVDQ-LGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVA  126 (240)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC-CBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHhCCHHHHHHHHHcCCcchh-hcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHH
Confidence            36677899999999998854332 33456899999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCc-hHHHHHHHhcCcccccccC-CCCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNN-LAMVRFLVEHGACIFATTH-SDHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~-~eivklLL~~GAdin~~d~-~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      +|+++|++++..|..|.||||+|+..++ .+++++|+++|++++..+. .|.|+++.++   ..|+.+++++|+++|+++
T Consensus       127 ~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~---~~~~~~~v~~Ll~~g~~~  203 (240)
T 3eu9_A          127 YLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV---LAGNTTVISLLLEAGANV  203 (240)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHH---HHTCHHHHHHHHHHTCCT
T ss_pred             HHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHH---HcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999997766 8999999999999999997 7889988887   889999999999999999


Q ss_pred             ccccccchhhhhhhhccccc
Q psy7683         442 GILNNGAVYALYDYEANNTD  461 (514)
Q Consensus       442 ~i~d~~g~taL~d~~~~~~~  461 (514)
                      +..+..|.++++.+......
T Consensus       204 ~~~~~~g~t~l~~A~~~~~~  223 (240)
T 3eu9_A          204 DAQNIKGESALDLAKQRKNV  223 (240)
T ss_dssp             TCBCTTSCBHHHHHHHTTCH
T ss_pred             CCcCCCCCCHHHHHHHcCcH
Confidence            99999999998876655443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=3.8e-23  Score=214.14  Aligned_cols=194  Identities=16%  Similarity=0.167  Sum_probs=150.6

Q ss_pred             HHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhC---CC
Q psy7683         295 KSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFG---CD  371 (514)
Q Consensus       295 k~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~G---ad  371 (514)
                      +.+++.|..  .+..+..|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+||..|+.++|++|+++|   ++
T Consensus       150 ~~ll~~ga~--vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~  227 (373)
T 2fo1_E          150 KECIAAGAD--VNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGD  227 (373)
T ss_dssp             HHHHHTCCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHT
T ss_pred             HHHHhcCCC--CcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccC
Confidence            344466632  3344567889999999999999999999999999999999999999999999999999999887   78


Q ss_pred             CcccCCCCCchhhhHhhcC---chHHHHHHHhcCccccc--------ccCCCCchhhhhhhhhhcCchhhHHHHHhhh-h
Q psy7683         372 VNAQDSDGWMPLHCAASCN---NLAMVRFLVEHGACIFA--------TTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ-E  439 (514)
Q Consensus       372 vn~~D~~G~TPLh~Aa~~g---~~eivklLL~~GAdin~--------~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~G-A  439 (514)
                      ++..|..|+||||+|+..+   +.+++++|+++|++++.        .+..|.|+++.++   ..|+.+++++|++.+ +
T Consensus       228 ~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~~  304 (373)
T 2fo1_E          228 IEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAA---QVSNMPIVKYLVGEKGS  304 (373)
T ss_dssp             TSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHH---SSCCHHHHHHHHHHSCC
T ss_pred             hhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHH---HhCCHHHHHHHHHhcCC
Confidence            9999999999999999887   88899999999998876        5667888888877   788899999999876 8


Q ss_pred             hcccccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         440 KLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       440 d~~i~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      +++..|..|.++|+.+......+       ++.+|.+.+.      -....+..|..|.+++...++
T Consensus       305 ~~n~~d~~g~TpL~~A~~~g~~~-------iv~~Ll~~ga------d~~~~d~~g~t~l~~A~~~g~  358 (373)
T 2fo1_E          305 NKDKQDEDGKTPIMLAAQEGRIE-------VVMYLIQQGA------SVEAVDATDHTARQLAQANNH  358 (373)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHH-------HHHHHHHTTC------CSSCCCSSSCCHHHHHHHTTC
T ss_pred             CccCcCCCCCCHHHHHHHcCCHH-------HHHHHHHcCC------CccCCCCCCCCHHHHHHHcCC
Confidence            99999988989888766544433       2333332211      012345678888888776654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.89  E-value=4.4e-23  Score=213.64  Aligned_cols=173  Identities=17%  Similarity=0.174  Sum_probs=156.4

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCcHHHHHHHcC---C
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLV---KDPSAANDEGITALHNAICAG---H  358 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~g---ad~n~~d~~G~TpLh~Aa~~g---~  358 (514)
                      ++..|+.+.++.|++.|...  +..+..|.|+||+|+..|+.++|++|++.+   ++++..|..|+||||+|+..+   +
T Consensus       173 A~~~g~~~iv~~Ll~~ga~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~  250 (373)
T 2fo1_E          173 AVLARRRRLVAYLMKAGADP--TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ  250 (373)
T ss_dssp             HHHHTCHHHHHHHHHTTCCS--CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH
T ss_pred             HHHcChHHHHHHHHHCCCCC--cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcch
Confidence            66788999999999998432  344568999999999999999999999998   799999999999999999998   8


Q ss_pred             hhHHHHHHhhCCCCcc--------cCCCCCchhhhHhhcCchHHHHHHHhcC-cccccccCCCCchhhhhhhhhhcCchh
Q psy7683         359 FDIVRFLVQFGCDVNA--------QDSDGWMPLHCAASCNNLAMVRFLVEHG-ACIFATTHSDHETAAVKCEEDEEGFEG  429 (514)
Q Consensus       359 ~eiVklLL~~Gadvn~--------~D~~G~TPLh~Aa~~g~~eivklLL~~G-Adin~~d~~g~t~l~~aa~a~~~g~~~  429 (514)
                      .+++++|+++|++++.        .|..|+||||+|+..|+.++|++|+++| ++++..|..|.|++++++   ..|+.+
T Consensus       251 ~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~---~~g~~~  327 (373)
T 2fo1_E          251 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA---QEGRIE  327 (373)
T ss_dssp             HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH---HHTCHH
T ss_pred             HHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHH---HcCCHH
Confidence            9999999999999986        6779999999999999999999999886 999999999999999888   789999


Q ss_pred             hHHHHHhhhhhcccccccchhhhhhhhcccccc
Q psy7683         430 CSEFLYSVQEKLGILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       430 ~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~e  462 (514)
                      ++++|+++|++++..|..|.++++.+......+
T Consensus       328 iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~  360 (373)
T 2fo1_E          328 VVMYLIQQGASVEAVDATDHTARQLAQANNHHN  360 (373)
T ss_dssp             HHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999998776554433

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=2.5e-23  Score=198.88  Aligned_cols=135  Identities=20%  Similarity=0.128  Sum_probs=115.6

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhh-CCCCcccCCCCCchhhhHhhc
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF-GCDVNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~-Gadvn~~D~~G~TPLh~Aa~~  389 (514)
                      ..|.|+||+||..|+.++|++|++.|++++.+|..|+||||+||..|+.++|++|+++ |++++.+|..|+||||+|+..
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            4688999999999999999999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             CchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccc
Q psy7683         390 NNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA  448 (514)
Q Consensus       390 g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g  448 (514)
                      |+.++|++|+++|++++.++..|.|++++++   ..|+.+++++|+..|+...+.+..+
T Consensus       151 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~---~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          151 GYADIVQLLLAKGARTDLRNIEKKLAFDMAT---NAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             TCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC---SHHHHHHHC----------------
T ss_pred             CCHHHHHHHHHcCCCCccccCCCCCHHHHhc---chhHHHHHHHHhccchhhhccchhh
Confidence            9999999999999999999999999999988   7889999999999999988777655

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1.5e-22  Score=175.73  Aligned_cols=111  Identities=23%  Similarity=0.227  Sum_probs=105.7

Q ss_pred             CCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhc
Q psy7683         310 SFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       310 ~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~  389 (514)
                      +..+.++||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHhcCcccccccCCCCchhhhhh
Q psy7683         390 NNLAMVRFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       390 g~~eivklLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      |+.+++++|+++|++++..|..|.|++++++
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence            9999999999999999999999999998775

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=5e-23  Score=199.87  Aligned_cols=141  Identities=14%  Similarity=0.099  Sum_probs=102.3

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcC
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCN  390 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g  390 (514)
                      ..|.|+||.|+..|+.+.++.|+++|++++.. ..|.|+||+||..|+.++|++|+++|++++.+|..|+||||+||..|
T Consensus         3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~-~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN-PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAG   81 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHT
T ss_pred             ccccccCchhhhhhhHHHHHHHhccCCCcccC-chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            57899999999999999999999999999864 67999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccch-hhhhhh
Q psy7683         391 NLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAV-YALYDY  455 (514)
Q Consensus       391 ~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~-taL~d~  455 (514)
                      +.+++++|+++|++++.+|..|.|+++.++   ..|+.+++++|+++|++++..+..+. ++++.+
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a  144 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAA---SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKC  144 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHH---HcCCHHHHHHHHHcCCCcceecCCCCcchHHHH
Confidence            999999999999999999999999999988   78999999999999999999987776 888755

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.87  E-value=2.9e-22  Score=199.18  Aligned_cols=150  Identities=23%  Similarity=0.299  Sum_probs=138.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDAS-----LEGELELVMKTARLVKDPSAANDEGITALHNAICAGHF  359 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa-----~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~  359 (514)
                      ++..|+.+.++.+++.|... .+..+..|.|+||+|+     ..++.+++++|++.|++++..+..|+||||+||..|+.
T Consensus       118 A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~  196 (276)
T 4hbd_A          118 SVSHANFPVVQQLLDSGVCK-VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRV  196 (276)
T ss_dssp             HHHTTCHHHHHHHHHTSCCC-TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCH
T ss_pred             HHHCCCHHHHHHHHHCCCCc-CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCH
Confidence            56788999999999998522 3345678999999999     66889999999999999999999999999999999999


Q ss_pred             hHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHh-cCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhh
Q psy7683         360 DIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE-HGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ  438 (514)
Q Consensus       360 eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~-~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~G  438 (514)
                      ++|++|+++|+++|.+|..|+||||+|+..|+.++|++|++ +|++++..|..|.|++++++   ..|+.+++++|++++
T Consensus       197 ~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~---~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          197 DVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL---DAGQSEIASMLYSRM  273 (276)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH---HHTCHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHH---HcCCHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999 89999999999999999888   789999999999875

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.87  E-value=9.1e-23  Score=207.70  Aligned_cols=152  Identities=13%  Similarity=0.074  Sum_probs=123.8

Q ss_pred             CcccHHHHHHHHHcCCCCCCc---------------cCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCcHH
Q psy7683         287 NNQEIAEIKSALKSGKLGKKR---------------CVSFDPLALLLDASLEGELELVMKTARLVKDPSA-ANDEGITAL  350 (514)
Q Consensus       287 ~~g~i~~ik~lL~~g~~~~~~---------------~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~-~d~~G~TpL  350 (514)
                      ..|+++.++.+|+.|......               .........+|.|+..+..+++++|++.|+++|. +|..|+|||
T Consensus        56 ~~g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpL  135 (327)
T 1sw6_A           56 DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPL  135 (327)
T ss_dssp             CHHHHHHHHHHHHHHHC-------------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHH
T ss_pred             cCchhHHHHHHHHhccCCccccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHH
Confidence            449999999999888322110               0112233445778888888999999999999999 899999999


Q ss_pred             HHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc---hHHHHHHHhcC-cccccccCCCCchhhhhhhhh-hc
Q psy7683         351 HNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN---LAMVRFLVEHG-ACIFATTHSDHETAAVKCEED-EE  425 (514)
Q Consensus       351 h~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~---~eivklLL~~G-Adin~~d~~g~t~l~~aa~a~-~~  425 (514)
                      |+||..|+.++|++||++|++++.+|..|+||||+|+..|+   .++++.|++++ ++++..+..|.|++++++... ..
T Consensus       136 h~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~  215 (327)
T 1sw6_A          136 HWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMT  215 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTST
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccc
Confidence            99999999999999999999999999999999999999999   78999999987 889999999999999988321 17


Q ss_pred             CchhhHHHHHhhh
Q psy7683         426 GFEGCSEFLYSVQ  438 (514)
Q Consensus       426 g~~~~v~lLl~~G  438 (514)
                      |+.+++++|++.+
T Consensus       216 g~~~~v~~Ll~~~  228 (327)
T 1sw6_A          216 GCSAAAKYYLDIL  228 (327)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHH
Confidence            8999999999884

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=3.8e-22  Score=185.65  Aligned_cols=128  Identities=22%  Similarity=0.185  Sum_probs=116.6

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccC-CCCCchhhhHhhc
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD-SDGWMPLHCAASC  389 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D-~~G~TPLh~Aa~~  389 (514)
                      ..|.|+||+|+..|+.+++++|++ |++++.+|..|+||||+||..|+.++|++|+++|++++.+| ..|+||||+|+..
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~  120 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGY  120 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhc
Confidence            367899999999999999999999 99999999999999999999999999999999999999998 8999999999999


Q ss_pred             CchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         390 NNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       390 g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      |+.+++++|+++|++++.+|..|.|++++++   ..++.+++..++.++++.+
T Consensus       121 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~---~~~~~~~~~~~l~~a~~~~  170 (183)
T 3deo_A          121 VRPEVVEALVELGADIEVEDERGLTALELAR---EILKTTPKGNPMQFGRRIG  170 (183)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHH---HHHHTCCCCSHHHHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCcCCCCCCCCHHHHHH---HhccCcccccHHHHHHHcC
Confidence            9999999999999999999999999999887   4455555566666666553

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.86  E-value=2.9e-22  Score=188.74  Aligned_cols=145  Identities=14%  Similarity=0.073  Sum_probs=124.8

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCCh----hHHHHHHhhCCCCcccCCCCCchhhhHh
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKDPSAAN-DEGITALHNAICAGHF----DIVRFLVQFGCDVNAQDSDGWMPLHCAA  387 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d-~~G~TpLh~Aa~~g~~----eiVklLL~~Gadvn~~D~~G~TPLh~Aa  387 (514)
                      +.+.|+.|+..|+++.++.++..+.  +.++ ..|+||||+|+..|+.    +++++||++|+++|.+|..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence            4567999999999999999998764  4555 6799999999999975    5999999999999999999999999999


Q ss_pred             hcCc------hHHHHHHHhcCcccccccCCCC-chhhhhhhhh--hcCchhhHHHHHh-hhhhcccccccchhhhhhhhc
Q psy7683         388 SCNN------LAMVRFLVEHGACIFATTHSDH-ETAAVKCEED--EEGFEGCSEFLYS-VQEKLGILNNGAVYALYDYEA  457 (514)
Q Consensus       388 ~~g~------~eivklLL~~GAdin~~d~~g~-t~l~~aa~a~--~~g~~~~v~lLl~-~GAd~~i~d~~g~taL~d~~~  457 (514)
                      ..|+      .+++++||++||+++.+|..|. |++++++...  ..++.+++++|++ +|+++++.|..|.++|+.+..
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~  163 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR  163 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHH
Confidence            9887      5789999999999999999999 7777766310  1345679999999 999999999999999986654


Q ss_pred             cc
Q psy7683         458 NN  459 (514)
Q Consensus       458 ~~  459 (514)
                      ..
T Consensus       164 ~~  165 (186)
T 3t8k_A          164 CQ  165 (186)
T ss_dssp             TT
T ss_pred             cC
Confidence            43

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.86  E-value=2.9e-21  Score=195.74  Aligned_cols=158  Identities=21%  Similarity=0.228  Sum_probs=138.3

Q ss_pred             ccCcccHHHHHHHHHcCCCCCC--------ccCCCCchhHHHHHHHcCCHHHHHHHHH-cCCCCCCCCCCCCcHHHHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKK--------RCVSFDPLALLLDASLEGELELVMKTAR-LVKDPSAANDEGITALHNAIC  355 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~--------~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~-~gad~n~~d~~G~TpLh~Aa~  355 (514)
                      ++..+..+.++.+++.|.....        ...+..|.|+||+|+..|+.++|++||+ .|++++.+|..|+|+||+++.
T Consensus       132 A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~  211 (337)
T 4g8k_A          132 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL  211 (337)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHH
Confidence            5667889999999998843221        1234568999999999999999999996 599999999999999999887


Q ss_pred             cCC----hhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhc-CcccccccCCCCchhhhhhhhhhcCchhh
Q psy7683         356 AGH----FDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH-GACIFATTHSDHETAAVKCEEDEEGFEGC  430 (514)
Q Consensus       356 ~g~----~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~-GAdin~~d~~g~t~l~~aa~a~~~g~~~~  430 (514)
                      .+.    ..++++|+++|+++|.+|..|+||||+|+..|+.+++++|+++ |++++.+|..|.|++++|+   ..|+.++
T Consensus       212 ~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~---~~g~~~i  288 (337)
T 4g8k_A          212 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV---ELKLKKI  288 (337)
T ss_dssp             HSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH---HTTCHHH
T ss_pred             HcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH---HcCCHHH
Confidence            655    3578999999999999999999999999999999999999985 8999999999999999887   8899999


Q ss_pred             HHHHHhhhhhccccc
Q psy7683         431 SEFLYSVQEKLGILN  445 (514)
Q Consensus       431 v~lLl~~GAd~~i~d  445 (514)
                      |++|+++|++++..+
T Consensus       289 v~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          289 AELLCKRGASTDCGD  303 (337)
T ss_dssp             HHHHHTTSCSSTTCC
T ss_pred             HHHHHHCCCCCCCCC
Confidence            999999999987654

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.85  E-value=1.2e-21  Score=191.29  Aligned_cols=130  Identities=23%  Similarity=0.222  Sum_probs=120.6

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccC-CCCCchhhhHhhcC
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD-SDGWMPLHCAASCN  390 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D-~~G~TPLh~Aa~~g  390 (514)
                      .|.|+||+||..|+.++|++|++ |++++.+|..|+||||+||..|+.++|++|+++|++++.+| ..|+||||+|+..|
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcC
Confidence            57899999999999999999999 99999999999999999999999999999999999999998 88999999999999


Q ss_pred             chHHHHHHHhcCcccccccCCCCchhhhhhh-------------hhhcCchhhHHHHHhhhhhcc
Q psy7683         391 NLAMVRFLVEHGACIFATTHSDHETAAVKCE-------------EDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       391 ~~eivklLL~~GAdin~~d~~g~t~l~~aa~-------------a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      +.++|++|+++|++++..|..|.|++++++.             +...|+.+++++|++.+.+..
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~~~  187 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYA  187 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccccc
Confidence            9999999999999999999999999988863             235688899999988876653

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.85  E-value=2.2e-21  Score=160.48  Aligned_cols=93  Identities=38%  Similarity=0.532  Sum_probs=88.2

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      +|.|+||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCcc
Q psy7683         392 LAMVRFLVEHGAC  404 (514)
Q Consensus       392 ~eivklLL~~GAd  404 (514)
                      .+++++|+++||+
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.85  E-value=6.8e-22  Score=178.98  Aligned_cols=131  Identities=16%  Similarity=0.235  Sum_probs=107.6

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCc-HHHHHHHcCChhHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGIT-ALHNAICAGHFDIV  362 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~T-pLh~Aa~~g~~eiV  362 (514)
                      .++..|+++.++.+++.|..  .+..+..|.|+||+|+ .|+.+++++|+++|++++.+|..|+| |||+|+..|+.++|
T Consensus        18 ~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v   94 (156)
T 1bi7_B           18 TAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTL   94 (156)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCC--CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHH
Confidence            36778999999999998743  3344568999999986 99999999999999999999999999 99999999999999


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhh
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAA  417 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~  417 (514)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.++..
T Consensus        95 ~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           95 VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence            9999999999999999999999999999999999999999999999998888765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.85  E-value=6.2e-21  Score=192.86  Aligned_cols=126  Identities=21%  Similarity=0.253  Sum_probs=119.9

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCC------CCCCCCcHHHHHHHc---CChhHHHHHHhhCCCCcccCCCCCch
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSA------ANDEGITALHNAICA---GHFDIVRFLVQFGCDVNAQDSDGWMP  382 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~------~d~~G~TpLh~Aa~~---g~~eiVklLL~~Gadvn~~D~~G~TP  382 (514)
                      ...++|+.|+..|+++.|+.|++.|++++.      .+..|+||||+||..   |+.++|++|+++|+++|.+|..|+||
T Consensus       150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~Tp  229 (301)
T 2b0o_E          150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  229 (301)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCH
T ss_pred             chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCH
Confidence            456889999999999999999999999998      688999999999997   89999999999999999999999999


Q ss_pred             hhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         383 LHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       383 Lh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      ||+|+..|+.++|++||++||+++.+|..|.|++++++   ..|+.+++++|+++|++
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~---~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR---KKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHH---HHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH---HcCCHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999887   78999999999999987

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.84  E-value=2.3e-20  Score=186.49  Aligned_cols=127  Identities=22%  Similarity=0.224  Sum_probs=102.2

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCC------CCCCCCCCcHHHHHHHc---CChhHHHHHHhhCCCCcccCCCCCchh
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKDP------SAANDEGITALHNAICA---GHFDIVRFLVQFGCDVNAQDSDGWMPL  383 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad~------n~~d~~G~TpLh~Aa~~---g~~eiVklLL~~Gadvn~~D~~G~TPL  383 (514)
                      .+..|+.|+..|+.+.++.+++.|+++      +..|..|+||||+||..   |+.++|++|+++|+++|.+|..|+|||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpL  209 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHH
Confidence            356778888888888888888888874      34467788888888888   778888888888888888888888888


Q ss_pred             hhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcc
Q psy7683         384 HCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG  442 (514)
Q Consensus       384 h~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~  442 (514)
                      |+|+..|+.++|++||++||+++.+|..|.||+++++   ..|+.+++++|+++|++..
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~---~~~~~~~v~~Ll~~ga~~~  265 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK---RLKHEHCEELLTQALSGRF  265 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHHHTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHH---HcCCHHHHHHHHHcCCCCC
Confidence            8888888888888888888888888888888888776   6778888888888887643

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.84  E-value=4.3e-21  Score=164.38  Aligned_cols=108  Identities=32%  Similarity=0.353  Sum_probs=99.6

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhh
Q psy7683         309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS  388 (514)
Q Consensus       309 ~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~  388 (514)
                      .+..|.|+||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHhcCcccccccCCCCchh
Q psy7683         389 CNNLAMVRFLVEHGACIFATTHSDHETA  416 (514)
Q Consensus       389 ~g~~eivklLL~~GAdin~~d~~g~t~l  416 (514)
                      .|+.+++++|+++|++++..+..+.++.
T Consensus        85 ~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           85 NGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999998888764

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=4.7e-21  Score=169.20  Aligned_cols=121  Identities=26%  Similarity=0.352  Sum_probs=111.2

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCch
Q psy7683         336 VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHET  415 (514)
Q Consensus       336 gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~  415 (514)
                      |+|+ .+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.|+
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            6777 788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccc
Q psy7683         416 AAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNT  460 (514)
Q Consensus       416 l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~  460 (514)
                      +++++   ..|+.+++++|+++|++++..|..|.++++.+.....
T Consensus        80 L~~A~---~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~  121 (137)
T 3c5r_A           80 LHDAA---KNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESM  121 (137)
T ss_dssp             HHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHH
T ss_pred             HHHHH---HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccH
Confidence            99988   7899999999999999999999999999976654333

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.83  E-value=1.9e-20  Score=165.46  Aligned_cols=119  Identities=25%  Similarity=0.275  Sum_probs=109.6

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..++..|+++.++.+++.|..  .+..+..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+||..|+.++
T Consensus        18 l~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~   95 (136)
T 2jab_A           18 LLEAARAGQDDEVRILMANGAD--VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEI   95 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHH
T ss_pred             HHHHHHhCCHHHHHHHHHcCCC--CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHH
Confidence            3447888999999999999843  33456789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcC
Q psy7683         362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG  402 (514)
Q Consensus       362 VklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~G  402 (514)
                      +++|+++|++++.+|..|+||||+|+..|+.+++++|+++|
T Consensus        96 v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           96 AEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.83  E-value=8.5e-21  Score=167.78  Aligned_cols=120  Identities=18%  Similarity=0.178  Sum_probs=113.4

Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCC-CCc
Q psy7683         336 VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHS-DHE  414 (514)
Q Consensus       336 gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~-g~t  414 (514)
                      +++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++..+.. |.|
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t   80 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTR   80 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBC
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCC
Confidence            57899999999999999999999999999999999999999999999999999 9999999999999999999999 899


Q ss_pred             hhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhccc
Q psy7683         415 TAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANN  459 (514)
Q Consensus       415 ~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~  459 (514)
                      ++++++   ..|+.+++++|+++|++++..|..|.++++.+....
T Consensus        81 ~L~~A~---~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~  122 (136)
T 1d9s_A           81 PVHDAA---REGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQG  122 (136)
T ss_dssp             HHHHHH---HHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHT
T ss_pred             HHHHHH---HcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            999888   789999999999999999999999999998766443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=2.6e-20  Score=186.06  Aligned_cols=162  Identities=13%  Similarity=0.035  Sum_probs=135.0

Q ss_pred             CCCCCCCchhhhhhHHHhhhcCCCCCCCCCCcchhhhhhcCCcccCcccHHHHHHHHHcCCCCC----CccCCCCchhHH
Q psy7683         242 PTTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGK----KRCVSFDPLALL  317 (514)
Q Consensus       242 ~~s~~s~~~~~~~~i~~~~~~~~~~~~~~~~d~~~~il~~~~~~~~~g~i~~ik~lL~~g~~~~----~~~~~~~g~t~L  317 (514)
                      +++....+..+..+|...+.......  .........+..+..+...++++.++.++..|....    ....+..|.|+|
T Consensus        96 kP~~~s~~~~~~~fI~aKYl~~~f~~--~~~~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~L  173 (278)
T 1dcq_A           96 KPNPGSDMIARKDYITAKYMERRYAR--KKHADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETAL  173 (278)
T ss_dssp             SCCTTCCHHHHHHHHHHHHTTCTTSC--CCSSSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhhccc--ccccccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcc
Confidence            44455566677777777666555422  223333445566667889999999999999985432    333467899999


Q ss_pred             HHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHH
Q psy7683         318 LDASLE---GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAM  394 (514)
Q Consensus       318 h~Aa~~---g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~ei  394 (514)
                      |+|+..   |+.+++++|+++|+++|.+|..|+||||+||..|+.++|++|+++|++++.+|..|+||||+|+..|+.++
T Consensus       174 h~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~  253 (278)
T 1dcq_A          174 HLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHC  253 (278)
T ss_dssp             HHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             hHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHH
Confidence            999999   89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCccc
Q psy7683         395 VRFLVEHGACI  405 (514)
Q Consensus       395 vklLL~~GAdi  405 (514)
                      +++|+++|++.
T Consensus       254 v~~Ll~~ga~~  264 (278)
T 1dcq_A          254 EELLTQALSGR  264 (278)
T ss_dssp             HHHHHHHHTTC
T ss_pred             HHHHHHcCCCC
Confidence            99999999864

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.83  E-value=2e-20  Score=194.84  Aligned_cols=128  Identities=25%  Similarity=0.278  Sum_probs=121.1

Q ss_pred             CCCchhHHHHHHHc-CCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhH
Q psy7683         310 SFDPLALLLDASLE-GELELVMKTARLVKDPSAAN--DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCA  386 (514)
Q Consensus       310 ~~~g~t~Lh~Aa~~-g~~~~V~~LL~~gad~n~~d--~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~A  386 (514)
                      ...+.++||+|+.. |++++|++||++|++++..+  ..|+||||+||..|+.++|++|+++|+++|..|..|+||||+|
T Consensus       196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            34678899999999 99999999999999999998  8899999999999999999999999999999999999999999


Q ss_pred             hhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         387 ASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       387 a~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      +..|+.++|++||++|++++..|..|.|++++++   ..|+.+++++|+.++..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~---~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGARDSEGRDPLTIAM---ETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHHHC-
T ss_pred             HHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHH---HCCCHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999887   78999999999998844

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.82  E-value=3.4e-20  Score=187.41  Aligned_cols=166  Identities=16%  Similarity=0.036  Sum_probs=132.2

Q ss_pred             CCCCCCchhhhhhHHHhhhcCCCCCCCCCCcchhhhhhcCCcccCcccHHHHHHHHHcCCCCCCc----cCCCCchhHHH
Q psy7683         243 TTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKKR----CVSFDPLALLL  318 (514)
Q Consensus       243 ~s~~s~~~~~~~~i~~~~~~~~~~~~~~~~d~~~~il~~~~~~~~~g~i~~ik~lL~~g~~~~~~----~~~~~g~t~Lh  318 (514)
                      +........+..+|...+.......  ........    +..+...++++.++.+++.|......    ..+..|.|+||
T Consensus       122 P~~~s~~~~r~~~I~~Ky~~~~f~~--~~~~~~~~----L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh  195 (301)
T 2b0o_E          122 PSAESDMGTRRDYIMAKYVEHRFAR--RCTPEPQR----LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLH  195 (301)
T ss_dssp             CCTTCCHHHHHHHHHHHHTSCTTSC--CCC-CHHH----HHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHH
T ss_pred             CCCcccHHHHHHHHHHHHHhhhhhc--ccCchHHH----HhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHH
Confidence            3344556667777777666544422  22222222    33467789999999999888432221    14678999999


Q ss_pred             HHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHH
Q psy7683         319 DASLE---GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMV  395 (514)
Q Consensus       319 ~Aa~~---g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eiv  395 (514)
                      +|+..   |+.++|++||+.|+++|.+|..|+||||+|+..|+.++|++||++|++++.+|..|.||||+|+..|+.+++
T Consensus       196 ~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv  275 (301)
T 2b0o_E          196 LAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECE  275 (301)
T ss_dssp             HHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             HHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH
Confidence            99997   899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcccccccCCCCchhhhhh
Q psy7683         396 RFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       396 klLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      ++|+++|++      .|.|++++++
T Consensus       276 ~~Ll~~ga~------~g~tpLh~A~  294 (301)
T 2b0o_E          276 ELLEQAQAG------TFAFPLHVDY  294 (301)
T ss_dssp             HHHHHHHHH------TTSSCCC---
T ss_pred             HHHHHhcCC------CCCChhHHHH
Confidence            999999987      4788888776

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.82  E-value=5.5e-20  Score=158.00  Aligned_cols=118  Identities=33%  Similarity=0.451  Sum_probs=109.5

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..++++.++.+++.|..  .+..+..|.++||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++
T Consensus         9 A~~~~~~~~v~~Ll~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~   86 (126)
T 1n0r_A            9 AARNGHLEVVKLLLEAGAD--VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL   86 (126)
T ss_dssp             HHHHTCHHHHHHHHHHTCC--TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             HHHcCcHHHHHHHHHcCCC--CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHH
Confidence            5567899999999998743  33445789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcc
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC  404 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAd  404 (514)
                      |+++|++++.+|..|.||||+|+..|+.+++++|+++|||
T Consensus        87 Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           87 LLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999986

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.81  E-value=7e-20  Score=151.37  Aligned_cols=93  Identities=32%  Similarity=0.513  Sum_probs=88.4

Q ss_pred             CCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhh
Q psy7683         345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDE  424 (514)
Q Consensus       345 ~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~  424 (514)
                      +|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|++++++   .
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~---~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA---R   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---H
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH---H
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999999887   7


Q ss_pred             cCchhhHHHHHhhhhh
Q psy7683         425 EGFEGCSEFLYSVQEK  440 (514)
Q Consensus       425 ~g~~~~v~lLl~~GAd  440 (514)
                      .|+.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            8999999999999974

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.79  E-value=9.5e-20  Score=158.01  Aligned_cols=111  Identities=26%  Similarity=0.307  Sum_probs=104.0

Q ss_pred             CCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhh
Q psy7683         343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEE  422 (514)
Q Consensus       343 d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a  422 (514)
                      +..|.|+||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|++++++  
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~--   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV--   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH--
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH--
Confidence            457889999999999999999999999999999999999999999999999999999999999999999999999888  


Q ss_pred             hhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         423 DEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       423 ~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                       ..|+.+++++|+++|++++..|..|.++++.+.
T Consensus        82 -~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  114 (123)
T 3aaa_C           82 -YEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD  114 (123)
T ss_dssp             -HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred             -HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence             789999999999999999999999999998663

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.79  E-value=1.4e-19  Score=154.78  Aligned_cols=108  Identities=28%  Similarity=0.378  Sum_probs=101.5

Q ss_pred             CCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhh
Q psy7683         341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       341 ~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      .+|..|+||||+||..|+.+++++|+++|++++..|..|+||||+|+..|+.+++++|+++|++++..+..|.|++++++
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~   83 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAK   83 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hhhhcCchhhHHHHHhhhhhcccccccchhh
Q psy7683         421 EEDEEGFEGCSEFLYSVQEKLGILNNGAVYA  451 (514)
Q Consensus       421 ~a~~~g~~~~v~lLl~~GAd~~i~d~~g~ta  451 (514)
                         ..|+.+++++|+++|++++..+..+.++
T Consensus        84 ---~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           84 ---KNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             ---TTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             ---HCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence               7899999999999999999988877654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.78  E-value=1.8e-18  Score=180.11  Aligned_cols=120  Identities=23%  Similarity=0.228  Sum_probs=109.0

Q ss_pred             ccCc-ccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         285 DSNN-QEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~-g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      ++.. ++++.++.+|+.|........+..|.|+||+|+..|+.++|++||++|+++|.+|..|+||||+|+..|+.++|+
T Consensus       206 Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~  285 (368)
T 3jue_A          206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLAC  285 (368)
T ss_dssp             HTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred             HHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHH
Confidence            5556 999999999999854433333378999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcc
Q psy7683         364 FLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGAC  404 (514)
Q Consensus       364 lLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAd  404 (514)
                      +||++|++++.+|..|.||||+|+..|+.+++++|+.+|..
T Consensus       286 ~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~  326 (368)
T 3jue_A          286 LFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMR  326 (368)
T ss_dssp             HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred             HHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999988743

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.78  E-value=2.7e-19  Score=170.76  Aligned_cols=127  Identities=17%  Similarity=0.141  Sum_probs=103.5

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      .++..|+++.++.+++.|..  .+..+..|.|+||+||..|+.++|++|++. |++++.+|..|+||||+||..|+.++|
T Consensus        79 ~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v  156 (222)
T 3ehr_A           79 EAAKRGNLSWLRECLDNRVG--VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIV  156 (222)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC--TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHH
T ss_pred             cccccCcHHHHHHHHhCCCC--ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence            36778899999999998843  334567899999999999999999999999 999999999999999999999999999


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCC
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSD  412 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g  412 (514)
                      ++|+++|++++.+|..|+||||+|+..|+.++++.|+++|++....+..+
T Consensus       157 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~  206 (222)
T 3ehr_A          157 QLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred             HHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence            99999999999999999999999999999999999999999998776554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.77  E-value=2.6e-20  Score=194.50  Aligned_cols=154  Identities=11%  Similarity=0.120  Sum_probs=124.8

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCC-CccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcC
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGK-KRCVSFDPLALLLDASLEGELELVMKTARLVKDP---SAANDEGITALHNAICAG  357 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~-~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~---n~~d~~G~TpLh~Aa~~g  357 (514)
                      +..++..|+++.++.+++.|.... ....+..+.+|||+||..|+.++|++|+++|+++   +..+.+ +||||+||..|
T Consensus        96 Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G  174 (376)
T 2aja_A           96 CFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENG  174 (376)
T ss_dssp             HHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCC
Confidence            344678899999999999885321 1223446788999999999999999999999762   222223 89999999999


Q ss_pred             ChhHHHHHHhhCCCCcc--cCCCCCchhhhHh-hcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHH
Q psy7683         358 HFDIVRFLVQFGCDVNA--QDSDGWMPLHCAA-SCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL  434 (514)
Q Consensus       358 ~~eiVklLL~~Gadvn~--~D~~G~TPLh~Aa-~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lL  434 (514)
                      +.++|++|+++|++++.  .|..|+||||+|+ ..|+.++|++|+++|++       +.|+++.++   ..|+.+++++|
T Consensus       175 ~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa---~~g~~evv~lL  244 (376)
T 2aja_A          175 HLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEF---EYGEKYVNPFI  244 (376)
T ss_dssp             CHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTT---TTTTTTHHHHH
T ss_pred             CHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHH---HCCCHHHHHHH
Confidence            99999999999999887  8888999999999 99999999999998864       567777666   88999999999


Q ss_pred             Hhhhhhcccccc
Q psy7683         435 YSVQEKLGILNN  446 (514)
Q Consensus       435 l~~GAd~~i~d~  446 (514)
                      +++|++++..+.
T Consensus       245 ~~~ga~~~~~~~  256 (376)
T 2aja_A          245 ARHVNRLKEMHD  256 (376)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HhcCcccccccH
Confidence            999998865543

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.75  E-value=3.2e-18  Score=158.94  Aligned_cols=133  Identities=20%  Similarity=0.162  Sum_probs=114.0

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC-CCCCcHHHHHHHcCChh
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAN-DEGITALHNAICAGHFD  360 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d-~~G~TpLh~Aa~~g~~e  360 (514)
                      +..++..|+++.++.+++ |.  ..+..+..|.|+||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.+
T Consensus        48 L~~A~~~g~~~~v~~Ll~-~~--~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~  124 (183)
T 3deo_A           48 WWTAARKADEQALSQLLE-DR--DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE  124 (183)
T ss_dssp             HHHHHHTTCHHHHHHHTT-TS--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHh-cC--CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHH
Confidence            344777889999999999 42  234456789999999999999999999999999999998 88999999999999999


Q ss_pred             HHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         361 IVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       361 iVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      ++++|+++|++++.+|..|+||||+|+..++.                 ..+.+++.+++   ..|+.+++++|.++
T Consensus       125 ~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~---~~~~~~i~~~L~~~  181 (183)
T 3deo_A          125 VVEALVELGADIEVEDERGLTALELAREILKT-----------------TPKGNPMQFGR---RIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHH---HHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHH---HcCHHHHHHHHHHh
Confidence            99999999999999999999999999985443                 23456666665   77899999999764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.74  E-value=2.5e-19  Score=187.07  Aligned_cols=127  Identities=14%  Similarity=0.133  Sum_probs=106.7

Q ss_pred             CCchhHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCC---cccCCCCCchhh
Q psy7683         311 FDPLALLLDASLEGELELVMKTARLVKDP---SAANDEGITALHNAICAGHFDIVRFLVQFGCDV---NAQDSDGWMPLH  384 (514)
Q Consensus       311 ~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~---n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadv---n~~D~~G~TPLh  384 (514)
                      ..+.|+||+|+..|+.++|++|++.|+..   +..+..|.||||+||..|+.++|++|+++|+++   +..+.+ +||||
T Consensus        90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh  168 (376)
T 2aja_A           90 IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFR  168 (376)
T ss_dssp             CCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHH
T ss_pred             CCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHH
Confidence            56789999999999999999999998832   234456889999999999999999999999863   333333 89999


Q ss_pred             hHhhcCchHHHHHHHhcCccccc--ccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         385 CAASCNNLAMVRFLVEHGACIFA--TTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       385 ~Aa~~g~~eivklLL~~GAdin~--~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      +||..|+.++|++|+++|++++.  .+..|.|+++.++  ...|+.++|++|++.|++
T Consensus       169 ~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa--~~~G~~eiv~~Ll~~ga~  224 (376)
T 2aja_A          169 LAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA--VGRGHHNVINFLLDCPVM  224 (376)
T ss_dssp             HHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH--STTCCHHHHHHHTTSHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHH--HHCCCHHHHHHHHhCCCc
Confidence            99999999999999999999887  8888888888665  268999999999998865

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.74  E-value=6.3e-18  Score=144.43  Aligned_cols=92  Identities=28%  Similarity=0.326  Sum_probs=85.2

Q ss_pred             ccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhH
Q psy7683         307 RCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCA  386 (514)
Q Consensus       307 ~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~A  386 (514)
                      ...+.+|.++||+|+..|+.+++++|++.|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34457899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCchHHHHHH
Q psy7683         387 ASCNNLAMVRFL  398 (514)
Q Consensus       387 a~~g~~eivklL  398 (514)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            999999999987

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.70  E-value=1e-17  Score=163.39  Aligned_cols=109  Identities=19%  Similarity=0.115  Sum_probs=102.9

Q ss_pred             CCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCccccccc-CCCCchhhhhhhh
Q psy7683         344 DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT-HSDHETAAVKCEE  422 (514)
Q Consensus       344 ~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d-~~g~t~l~~aa~a  422 (514)
                      ..|.||||+||..|+.++|++|++ |+++|.+|..|+||||+||..|+.++|++|+++|++++..+ ..|.|++++++  
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~--  119 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA--  119 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH--
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH--
Confidence            468999999999999999999999 99999999999999999999999999999999999999998 77889999887  


Q ss_pred             hhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         423 DEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       423 ~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                       ..|+.+++++|+++|++++..|..|.++++.+.
T Consensus       120 -~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~  152 (244)
T 3ui2_A          120 -GYVRPEVVEALVELGADIEVEDERGLTALELAR  152 (244)
T ss_dssp             -HTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             -HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence             889999999999999999999999999987654

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.68  E-value=6.3e-17  Score=138.16  Aligned_cols=92  Identities=34%  Similarity=0.425  Sum_probs=85.2

Q ss_pred             CCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhh
Q psy7683         340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVK  419 (514)
Q Consensus       340 n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~a  419 (514)
                      ...|.+|.|+||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++..|..|.|+++++
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhcCchhhHHHH
Q psy7683         420 CEEDEEGFEGCSEFL  434 (514)
Q Consensus       420 a~a~~~g~~~~v~lL  434 (514)
                      +   ..|+.+++++|
T Consensus        98 ~---~~~~~~~~~~L  109 (110)
T 2zgd_A           98 I---DNGNEDLAEIL  109 (110)
T ss_dssp             H---HHTCHHHHHHH
T ss_pred             H---HcCCHHHHHHh
Confidence            8   78999999987

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=98.72  E-value=3e-09  Score=81.61  Aligned_cols=55  Identities=25%  Similarity=0.593  Sum_probs=47.8

Q ss_pred             cchhhhhhhhcccccc-cccccCceEEEeecCCcccccceeecc-CCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDE-LSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~e-L~~k~g~~i~vl~~~~~~e~~ww~~r~-~g~~G~~P~~~l~~~  504 (514)
                      ..+.|+|+|.+....+ |.|++|+++.|+.+.+++   ||.++. +|+.|+||.+||+.+
T Consensus         4 ~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~~---Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            4 ARCRTLYPFSGERHGQGLRFAAGELITLLQVPDGG---WWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTTS---CEEEECTTSCEEEECGGGEEEC
T ss_pred             CEEEECcccCCCCCCCCccCCCCCEEEEeEecCCC---eEEEEeCCCCEEEEcHHHEEEC
Confidence            4578999999988876 999999999999887665   999997 689999999999764

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=98.65  E-value=7.8e-09  Score=80.47  Aligned_cols=58  Identities=21%  Similarity=0.487  Sum_probs=50.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.|+..|+.|+||.+|++.+....|
T Consensus         4 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~fP~~yv~~~~~~~~   61 (65)
T 2nwm_A            4 ARLKFDFQAQSPKELTLQKGDIVYIHKEVDKN---WLEGEHHGRLGIFPANYVEVLPLEHH   61 (65)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEECCTTT---CEEEEETTEEEEECGGGEEECCCC--
T ss_pred             EEEeeeECCCCcCccCCcCCCEEEEEEecCCC---EEEEEECCcEEEEehhhEEEcCCCCC
Confidence            56899999999999999999999999886554   99999999999999999998876554

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.64  E-value=9.4e-09  Score=83.28  Aligned_cols=63  Identities=27%  Similarity=0.560  Sum_probs=55.9

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATP  513 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~~~~  513 (514)
                      -+.++|+|.+....+|.|+.|+++.|+.+.+++   ||+++..|+.|+||.+||+.+...++...+
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~g---Ww~g~~~g~~G~~P~~yv~~~~~~~~~~~~   72 (80)
T 2ekh_A           10 SYMTCSAYQKVQDSEISFPAGVEVQVLEKQESG---WWYVRFGELEGWAPSHYLVLDENEQPDPSG   72 (80)
T ss_dssp             EEEECSCBCCSSTTSCCBCTTCEEEEEEECTTS---EEEEEETTEEEEEETTTEECCCCCCCCCCC
T ss_pred             EEEECCCCCCCCCCccCcCCCCEEEEEEeCCCC---eEEEEECCCEEEEEhHHeEECCCCCCCccc
Confidence            467899999999999999999999999887655   999999999999999999999887766543

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.64  E-value=9e-09  Score=79.03  Aligned_cols=56  Identities=32%  Similarity=0.581  Sum_probs=50.2

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ....|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.++
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            6 SQVEALFSYEATQPEDLEFQEGDIILVLSKVNEE---WLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             EEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSS---CEEEECSSCEEEECGGGCCCSC
T ss_pred             eEEEECCCCCcCCCCCccCCCCCEEEEEEeCCCC---EEEEEECCcEEEEeHHHEEECC
Confidence            3467899999999999999999999999886554   9999999999999999998764

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=98.63  E-value=7.1e-09  Score=80.82  Aligned_cols=54  Identities=30%  Similarity=0.552  Sum_probs=48.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      .+.|+|+|.+...++|.|+.|+++.|+.+.+++   ||+|++  .|+.|+||.+||+.+
T Consensus         8 ~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~g---Ww~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            8 SYQALYSYIPQNDDELELRDGDIVDVMEKCDDG---WFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECTTS---EEEEEETTTCCEEEEETTSEEEC
T ss_pred             EEEEceeECCCCcCCcCCCCCCEEEEeEeCCCC---EEEEEECCCCCEEEEehhHeEEE
Confidence            467899999999999999999999999887765   999986  589999999999875

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=98.62  E-value=9.5e-09  Score=79.99  Aligned_cols=58  Identities=33%  Similarity=0.585  Sum_probs=51.0

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ..|+|+|.+....+|.|+.|+++.|+.+.+++   ||.|+..|+.|+||.+|++.+..-.+
T Consensus         4 ~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~g---Ww~g~~~g~~G~fP~~yv~~~~~~~~   61 (65)
T 2fei_A            4 CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSNFVKELELEHH   61 (65)
T ss_dssp             EECSSCCCCCSTTBCCCCTTCEEECCCCSSSS---EEEEESSSCEEEEETTTSCBCCCCC-
T ss_pred             EEECccCCcCCcCccCCCCCCEEEEEEecCCC---EEEEEECCcEEEecHHHEEEcCCCCC
Confidence            56899999999999999999999999876554   99999999999999999998875443

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=98.62  E-value=9.4e-09  Score=77.78  Aligned_cols=55  Identities=42%  Similarity=0.774  Sum_probs=48.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+.|
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~r   58 (58)
T 1uti_A            4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPS---WWTGRLHNKLGLFPANYVAPMMR   58 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEECC-
T ss_pred             EEECccCCCCCcCCCCCCCCCEEEEEEECCCC---EEEEEECCeEEEeeHHHeEEccC
Confidence            46899999999999999999999999886554   99999999999999999987754

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=98.61  E-value=1e-08  Score=77.69  Aligned_cols=54  Identities=33%  Similarity=0.693  Sum_probs=48.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+.
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            4 AIVEFDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCTTT---EEEEEETTEEEEEEGGGEEECC
T ss_pred             EEECcccCCCCcCEeeECCCCEEEEEEeCCCC---EEEEEECCeEEEEehHHeEEcC
Confidence            46789999999999999999999999886554   9999999999999999998775

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=98.61  E-value=1.3e-08  Score=81.10  Aligned_cols=59  Identities=24%  Similarity=0.325  Sum_probs=51.9

Q ss_pred             chhhhhhhhcc--cccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~--~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ...|+|+|.+.  ...+|.|++|+++.|+.+.+++   ||.++++|+.|+||.+||+.+....+
T Consensus        11 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~g---Ww~g~~~g~~G~fP~~yv~~~~~~~~   71 (73)
T 2ebp_A           11 RARVHTDFTPSPYDTDSLKLKKGDIIDIISKPPMG---TWMGLLNNKVGTFKFIYVDVLSSGPS   71 (73)
T ss_dssp             EEEECSCBCCCTTCCSBCCBCSSCEEEEEECCSSS---CEEEECSSCEEEECSTTEEECCCCSC
T ss_pred             EEEEeeccCCCCCCCCccCCCCCCEEEEEEeCCCC---eEEEEECCCEEEEeHHHEEECCCCCC
Confidence            46789999976  9999999999999999986555   99999999999999999999876544

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=98.61  E-value=1.1e-08  Score=82.81  Aligned_cols=63  Identities=30%  Similarity=0.495  Sum_probs=54.4

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA  511 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~~  511 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+.+  +++||.|++.|+.|+||.+||+.+....+..
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~--~~gWw~g~~~g~~G~fP~~yv~~~~~~~~~~   73 (80)
T 2i0n_A           11 KYARALKDYNVSDTSLLPFKRNDIITITFKDQ--ENKWFMGQLNGKEGSFPVDHVEILLSDVPPP   73 (80)
T ss_dssp             CEEEESSCBCCCSSSSCCBCSSEEEEEEEESS--SSSEEEEEETTEEEEEEGGGEEEESSCCCCC
T ss_pred             eEEEECCCCCcCCCCCcCCCCCCEEEEEEecC--CCCEEEEEECCcEEEechHHEEECCCCCCCC
Confidence            44678999999999999999999999998864  3349999999999999999999987765543

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=98.60  E-value=1.2e-08  Score=77.83  Aligned_cols=54  Identities=26%  Similarity=0.567  Sum_probs=49.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ...|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus         6 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~l   59 (60)
T 1w70_A            6 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLSFVKIL   59 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEeCCCC---eEEEEECCCEEEechHHEEEC
Confidence            467899999999999999999999999887554   999999999999999999876

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.60  E-value=1.6e-08  Score=81.60  Aligned_cols=61  Identities=31%  Similarity=0.641  Sum_probs=52.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCC-cccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~-~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      -+.|+|+|.+....+|.|++|+++.|+.+.+ ..+..||+++..|+.|+||.+||+.+...+
T Consensus        15 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   76 (79)
T 1uhc_A           15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGP   76 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSC
T ss_pred             EEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCCC
Confidence            4678999999999999999999999998865 122459999999999999999999886544

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=98.59  E-value=1.5e-08  Score=81.10  Aligned_cols=61  Identities=34%  Similarity=0.719  Sum_probs=53.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCC---CCCCchhhhhhcCCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g---~~G~~P~~~l~~~~~~~~~  510 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.+++.+   +.|+||.+||+.+....|.
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~~~g~~G~~P~~yv~~~~~~~p~   74 (76)
T 2ed1_A           11 RRVKTIYDCQADNDDELTFIEGEVIIVTGEEDQE---WWIGHIEGQPERKGVFPVSFVHILSDSGPS   74 (76)
T ss_dssp             EEEEESSCCCCSSSSBCCCCSSCEEEESSCCSSS---EEEEEETTCTTCEEEEEGGGEEECCCCCCS
T ss_pred             eEEEECccCCCCCcCCcCcCCCCEEEEEEecCCC---EEEEEECCCCCCEEEEehHHeEECCCCCCC
Confidence            3468899999999999999999999999876554   99999877   8999999999999876664

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=1.5e-08  Score=80.41  Aligned_cols=61  Identities=34%  Similarity=0.587  Sum_probs=52.3

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+..+..||.+++.|+.|+||.+||+.+....
T Consensus        10 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   70 (73)
T 2dl7_A           10 FVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGP   70 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSSC
T ss_pred             EEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCCC
Confidence            3678999999999999999999999998742234459999999999999999999886643

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=1.6e-08  Score=79.51  Aligned_cols=60  Identities=25%  Similarity=0.569  Sum_probs=53.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      .+.++|+|.+....+|.|+.|+++.|+.+.+++   ||+++..|+.|+||.+||+.+...++.
T Consensus        10 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~~s   69 (70)
T 2ega_A           10 QYVVVSNYKKQENSELSLQAGEVVDVIEKNESG---WWFVSTSEEQGWVPATYLEAQNSGPSS   69 (70)
T ss_dssp             CEECCSCCCCCSSSSCCCCTTCBCEEEEECTTS---EEEEECSSCEEEEEGGGCEESCCCCCC
T ss_pred             EEEECceECCCCCCcccCCCCCEEEEEEccCCC---eEEEEECCCEEEEehHHcEECCCCCCC
Confidence            467899999999999999999999999986655   999999999999999999998876553

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=98.57  E-value=6.7e-09  Score=81.54  Aligned_cols=60  Identities=35%  Similarity=0.656  Sum_probs=51.6

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ..|+|+|.+....+|.|++|+++.|+.+.+..+.+||+++..|+.|+||.+||+.+..+.
T Consensus         6 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   65 (69)
T 1wyx_A            6 AKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMY   65 (69)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEEEE
T ss_pred             EEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCCCC
Confidence            568999999999999999999999998863223459999999999999999999876544

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=98.57  E-value=1.5e-08  Score=78.21  Aligned_cols=57  Identities=37%  Similarity=0.672  Sum_probs=49.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.. .+.+||+++..|+.|+||.+|++.++
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~W~~g~~~g~~G~~P~~yv~~l~   64 (64)
T 2jte_A            8 YCRTLFPYTGTNEDELTFREGEIIHLISKET-GEAGWWKGELNGKEGVFPDNFAVQIS   64 (64)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEESCS-SSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCccCCCccCCCCCCEEEEEECCC-CCCCEEEEEECCeEEEEeHHHEEECc
Confidence            3578999999999999999999999998741 23459999999999999999998763

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.57  E-value=2e-08  Score=78.65  Aligned_cols=56  Identities=25%  Similarity=0.692  Sum_probs=50.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.+++.|+.|+||.+||+.+..
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl4_A            9 TYVALYKFVPQENEDLEMRPGDIITLLEDSNED---WWKGKIQDRIGFFPANFVQRLSG   64 (68)
T ss_dssp             EEEESSCCCCSSTTBCCCCTTCEEEEEECCCSS---EEEEECSSCEEEEETTTEEECCC
T ss_pred             EEEEeeeECCCCcCCcCCCCCCEEEEEEeCCCC---EEEEEECCcEEEEehHHeEECCC
Confidence            467899999999999999999999999876555   99999999999999999998864

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=98.56  E-value=1.6e-08  Score=76.89  Aligned_cols=54  Identities=33%  Similarity=0.669  Sum_probs=48.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ...|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus         6 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            6 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECTTS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECceeCCCCcCCcCCCCCCEEEEEEecCCC---EEEEEECCcEEEEeHHHEEEC
Confidence            357899999999999999999999999886654   999999999999999998754

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=98.56  E-value=2.1e-08  Score=75.93  Aligned_cols=53  Identities=34%  Similarity=0.683  Sum_probs=47.6

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC--CCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~~~l~~~  504 (514)
                      ..|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..  |+.|+||.+||+.+
T Consensus         3 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDD---WWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEECceECCCCCCCcccCCCCEEEEEEecCCC---cEEEEECCCCCEEEechHHeEEC
Confidence            46799999999999999999999999886554   9999987  99999999999765

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=98.55  E-value=2e-08  Score=78.82  Aligned_cols=57  Identities=32%  Similarity=0.643  Sum_probs=50.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+...
T Consensus         5 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            5 CCRGLYDFEPENQGELGFKEGDIITLTNQIDEN---WYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEESSSS---EEEEEETTEEEEEEGGGEEESCC-
T ss_pred             EEEEeeeECCCCCCccCCCCCCEEEEEEecCCC---EEEEEECCcEEEeeHHHEEEcCcc
Confidence            357899999999999999999999999986555   999999999999999999887543

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.55  E-value=2.4e-08  Score=82.32  Aligned_cols=61  Identities=39%  Similarity=0.688  Sum_probs=54.2

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+....+.
T Consensus        18 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~~~   78 (88)
T 1x2q_A           18 RKVRALYDFEAVEDNELTFKHGEIIIVLDDSDAN---WWKGENHRGIGLFPSNFVTTNLNIETE   78 (88)
T ss_dssp             EEEEESSCCCCCSSSCCCCCSSCEEEEEECSCSS---SEEEEETTEEEEECGGGEESCSSCCSC
T ss_pred             eEEEEcccCCCCCcCccCCCCCCEEEEEEeCCCC---EEEEEECCcEEEEehHHEEEcCCcCcc
Confidence            3468899999999999999999999999876555   999999999999999999998877654

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=98.55  E-value=1.6e-08  Score=79.07  Aligned_cols=54  Identities=20%  Similarity=0.299  Sum_probs=48.8

Q ss_pred             hhhhhhhhcc--cccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~--~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ..|+|+|.+.  ...+|.|++|+++.|+.+.+++   ||.|++.|+.|+||.+||+.+.
T Consensus         9 ~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~g---Ww~g~~~g~~G~fP~~yv~~~~   64 (67)
T 2eyx_A            9 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFTHVRLLD   64 (67)
T ss_dssp             EEECCCBCCCTTCSSBCCBCSSEEEEEEEECTTS---EEEEEETTEEEEEEGGGBCCBC
T ss_pred             EEEeEEECCCCCCCCccccCCCCEEEEEEecCCC---EEEEEECCCEEEEehHhEEEcC
Confidence            5789999988  8899999999999999887555   9999999999999999998774

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=98.55  E-value=1.2e-08  Score=82.77  Aligned_cols=59  Identities=24%  Similarity=0.511  Sum_probs=52.9

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      -..|+|+|.+....+|.|+.|+++.|+.+.+++   ||.|+..|+.|+||.+||+.+..+.+
T Consensus        20 ~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~~g---Ww~g~~~g~~G~fP~nyV~~~~~~p~   78 (79)
T 1z9q_A           20 RAEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLSFVKILKDFPE   78 (79)
T ss_dssp             CEEESSCCCCSSTTBCCCCTTCCBCCCEESSSS---EEEEEETTEEEEEEGGGEEESSCCCC
T ss_pred             EEEEcCccCCCCCCcccccCCCEEEEeEecCCC---EEEEEECCeEEEecHHHEEECCCCCC
Confidence            467899999999999999999999999886555   99999999999999999999877643

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=98.55  E-value=1.8e-08  Score=78.69  Aligned_cols=58  Identities=17%  Similarity=0.358  Sum_probs=50.6

Q ss_pred             hhhhhhhhcc--cccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         449 VYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       449 ~taL~d~~~~--~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ..|+|+|.+.  ...+|.|++|+++.|+.+.+++   ||.|++.|+.|+||.+||+.+....+
T Consensus         4 ~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A            4 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             EEECSCBCSEEECTTBCCBCTTCEEEEEEECSSS---EEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             EEEeeeECCCCCCCCccccCCCCEEEEEEecCCC---eEEEEeCCcEEEEehHHeEECCCcCc
Confidence            4678999988  8999999999999999886555   99999999999999999998876544

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=2.4e-08  Score=80.54  Aligned_cols=59  Identities=32%  Similarity=0.688  Sum_probs=52.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||++++.|+.|+||.+||+.+..-..
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (79)
T 2yun_A            9 LCKALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFPAAYVEELPSNAG   67 (79)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSS---CEEEESSSCEEEECSTTEEEESSCSS
T ss_pred             EEEECccCCcCCCCCcCCCCCCEEEEEEcCCCC---EEEEEECCCEEEEEhHHeEECCCCCC
Confidence            467899999999999999999999999886554   99999999999999999998876544

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=98.55  E-value=1.8e-08  Score=77.42  Aligned_cols=54  Identities=33%  Similarity=0.596  Sum_probs=48.5

Q ss_pred             hhhhhhhhcccccccccccCceEEEeec-CCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRK-GDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~-~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ..|+|+|.+....+|.|++|+++.|+.+ .++   .||.++..|+.|+||.+|++.+.
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---~Ww~g~~~g~~G~~P~~yv~~~~   58 (62)
T 2j6f_A            4 YIVEYDYDAVHDDELTIRVGEIIRNVKKLQEE---GWLEGELNGRRGMFPDNFVKEIK   58 (62)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEEECSST---TEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEECccCCcCCcCCcCCcCCCEEEEEEecCCC---CEEEEEECCcEEEechHHEEECC
Confidence            4689999999999999999999999987 444   49999999999999999998775

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=98.55  E-value=1.9e-08  Score=79.27  Aligned_cols=62  Identities=31%  Similarity=0.612  Sum_probs=52.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+ .+.+||+++ ..|+.|+||.+||+.+....+.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   70 (71)
T 1u5s_A            8 VVQTLYPFSSVTEEELNFEKGETMEVIEKPE-NDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL   70 (71)
T ss_dssp             EEEESSCCCCCSSSBCCCCSSCCEEEEECCC-TTTCEEEEEETTTEEEEEETTSEEECCCSCCC
T ss_pred             EEEEcccCCCCCCCcccCCCCCEEEEEECCC-CCCCCEEEEeCCCCEEEEeHHHEEECCCCCCC
Confidence            3678999999999999999999999998831 134499997 8999999999999998876653

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=98.54  E-value=2e-08  Score=79.11  Aligned_cols=58  Identities=33%  Similarity=0.708  Sum_probs=50.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.. .+.+||.++..|+.|+||.+||+.+...
T Consensus         5 ~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~-~~~gWw~g~~~g~~G~~P~~yV~~~~~~   62 (69)
T 2ydl_A            5 CKVIFPYEAQNDDELTIKEGDIVTLINKDC-IDVGWWEGELNGRRGVFPDNFVKLLPPL   62 (69)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEESCC-SSTTEEEEEETTEEEEEEGGGEEECCSC
T ss_pred             EEEcccCCCCCCCccccCCCCEEEEEEcCC-CCCCEEEEEECCcEEEecHHHEEECCCC
Confidence            578999999999999999999999998851 1234999999999999999999987643

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=98.54  E-value=1.8e-08  Score=76.77  Aligned_cols=55  Identities=35%  Similarity=0.710  Sum_probs=49.0

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ....|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            6 PQCKALYAYDAQDTDELSFNANDIIDIIKEDPSG---WWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECTTS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             cEEEECccCCcCCcCCcCCCCCCEEEEEEecCCC---EEEEEECCEEEEEcHHHEEEC
Confidence            3467899999999999999999999999887554   999999999999999998753

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=98.54  E-value=2.4e-08  Score=76.57  Aligned_cols=55  Identities=15%  Similarity=0.320  Sum_probs=49.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~~~  506 (514)
                      +.|+|+|.+...++|.|+.|+++.|+.+.+++   ||.++  ..|+.|+||.+||+.+.+
T Consensus         6 ~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~~~g~~G~fP~~yv~~~~~   62 (62)
T 2fpe_A            6 HRAIFRFVPRHEDELELEVDDPLLVELQAEDY---WYEAYNMRTGARGVFPAYYAIEVTK   62 (62)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEEECTTS---EEEEEETTTCCEEEEEGGGEEECCC
T ss_pred             EEECccCCccCcCcCcCCCCCEEEEEEecCCC---EEEEEECCCCCEEEechHHEEECcC
Confidence            57899999999999999999999999876655   99998  789999999999988753

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=2.9e-08  Score=78.17  Aligned_cols=60  Identities=28%  Similarity=0.562  Sum_probs=51.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      ...++|+|.+....+|.|++|+++.|+.+....+..||++++.|+.|+||.+||+.+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            9 LARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             EEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCS
T ss_pred             EEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            357899999999999999999999999886222445999999999999999999987653

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=98.53  E-value=1.9e-08  Score=79.81  Aligned_cols=60  Identities=35%  Similarity=0.640  Sum_probs=53.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+..+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~~~   68 (73)
T 2dbm_A            9 CCRALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALPHS   68 (73)
T ss_dssp             EEEESSCBCCCSTTCCCBCTTCEEECCBCSSSS---EEEEEETTEEEEEESSSEEESSCCSCC
T ss_pred             EEEEccccCCCCCCCccCCCCCEEEEEEecCCC---EEEEEECCCEEEechHHEEEccCCCCC
Confidence            467899999999999999999999999886554   999999999999999999998766543

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=98.53  E-value=2.2e-08  Score=77.41  Aligned_cols=54  Identities=33%  Similarity=0.653  Sum_probs=49.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus        11 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B           11 TAIALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             CEEECSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEEeeECCCCcCEeeEecCCEEEEEEecCCC---EEEEEECCcEEEEehHHeEEC
Confidence            367899999999999999999999999887554   999999999999999999875

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.53  E-value=3.2e-08  Score=77.77  Aligned_cols=58  Identities=31%  Similarity=0.604  Sum_probs=50.8

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+ +   ..||.++..|+.|+||.+||+.+....
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (69)
T 1uhf_A            9 EEYIALYPYSSVEPGDLTFTEGEEILVTQK-D---GEWWTGSIGDRSGIFPSNYVKPKDSGP   66 (69)
T ss_dssp             EEEECSSCBCCSSSSBCCBCTTCEEEECEE-E---TTEEEECSTTCCEEECGGGCEECCCCC
T ss_pred             CEEEEeeeECCCCcCccCCCCCCEEEEEEe-C---CCEEEEEeCCcEEEEchHHeEECCCCC
Confidence            346789999999999999999999999987 3   349999999999999999999876543

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=98.53  E-value=2.7e-08  Score=77.11  Aligned_cols=55  Identities=27%  Similarity=0.562  Sum_probs=49.3

Q ss_pred             chhhhhhhhc-ccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~-~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~~  505 (514)
                      .+.|+|+|.+ ....+|.|++|+++.|+.+.+++   ||+++  ..|+.|+||.+||+.+.
T Consensus         7 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~g---W~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            7 RVRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             EEEESSCBCCCTTSSBCCBCTTCEEEEEEECTTS---EEEEEETTTCCEEEEEGGGEEECC
T ss_pred             EEEEccccCCCCCCCcCcCCCCCEEEEeEecCCC---EEEEEECCCCCEEEEEhHHeEECc
Confidence            4688999999 99999999999999999886554   99999  78999999999998775

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=98.53  E-value=2.7e-08  Score=77.33  Aligned_cols=55  Identities=31%  Similarity=0.718  Sum_probs=48.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~  506 (514)
                      ..|+|+|.+....+|.|++|+++.|+.+.+++   ||.++ .+|+.|+||.+|+..+..
T Consensus         6 ~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            6 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSS---EEEEECTTSCEEEEEGGGEEECC-
T ss_pred             EEECCcCCCCCCCccCCcCCCEEEEEEecCCC---eEEEEECCCCEEEEChHHEeecCC
Confidence            57899999999999999999999999887654   99999 899999999999987653

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=98.53  E-value=2.5e-08  Score=75.12  Aligned_cols=53  Identities=32%  Similarity=0.748  Sum_probs=47.0

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~  504 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.++ .+|+.|+||.+|++.+
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSS---EEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEECCcCCCCCCCCCCCCCCCEEEEEEecCCC---cEEEEeCCCCEEEEeHHHEEEC
Confidence            46899999999999999999999999886654   99998 8899999999998753

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.53  E-value=3e-08  Score=80.09  Aligned_cols=63  Identities=24%  Similarity=0.530  Sum_probs=54.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-----CCCCCchhhhhhcCCCCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-----NKEGYVPRNLLGLYPRVQPSATP  513 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-----g~~G~~P~~~l~~~~~~~~~~~~  513 (514)
                      -+.++|+|.+....+|.|+.|+++.|+.+.+++   ||+++..     ++.|+||.+||+.+......+.|
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~g---Ww~g~~~~~g~~~~~G~fP~~yv~~~~~~~~~~~p   76 (80)
T 1ue9_A            9 IAQVTSAYVASGSEQLSLAPGQLILILKKNTSG---WWQGELQARGKKRQKGWFPASHVKLLGPSSERASG   76 (80)
T ss_dssp             EEEECSCCCCCSTTBCCCCTTCEEEEEEECSSS---EEEEEECSCCSSCCEEEEETTSEEECCSCCSSCCC
T ss_pred             EEEECcccCCCCCCCCCCCCCCEEEEEEecCCC---cEEEEECCCCCCCcEEEEchHHeEECCCCCCCCCC
Confidence            357899999999999999999999999886655   9999987     48999999999999877666554

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=98.53  E-value=2.3e-08  Score=77.13  Aligned_cols=55  Identities=33%  Similarity=0.653  Sum_probs=49.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ...|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~   62 (64)
T 2ak5_A            8 VVRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSNYVREIK   62 (64)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCTTS---EEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEccccCCcCcCcccCCCCCEEEEeEecCCC---EEEEEECCCEEEEehHHeEEcC
Confidence            367899999999999999999999999886554   9999999999999999998764

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=2.4e-08  Score=80.60  Aligned_cols=59  Identities=31%  Similarity=0.576  Sum_probs=52.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.+++   ||.+++.|+.|+||.+||+.+....+
T Consensus        19 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~p~   77 (79)
T 1x69_A           19 TAVALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPANYVELRQSGPS   77 (79)
T ss_dssp             CEEESSCCCCSSSSBCCCCTTCEEEEEEECSSS---EEEEEETTEEEEEETTSEEECCCCCS
T ss_pred             EEEECccCCCCCCCCcCcCCCCEEEEeEecCCC---eEEEEECCcEEEechHHEEECCCCCC
Confidence            367899999999999999999999999886554   99999999999999999999877654

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=4e-08  Score=80.43  Aligned_cols=59  Identities=25%  Similarity=0.433  Sum_probs=51.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeec--CCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRK--GDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~--~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      .-+.|||+|.+....+|.|+.|+++.|+.+  .++   .||.+++.|+.|+||.+||+.+....
T Consensus         9 ~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~~---~Ww~g~~~g~~G~fP~~yv~~~~~~~   69 (85)
T 2dlp_A            9 GYVIALRSYITDNCSLLSFHRGDLIKLLPVATLEP---GWQFGSAGGRSGLFPADIVQPAAAPD   69 (85)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEECCCSCCCT---TEEEEESSSCEEEEETTSEEECCCSC
T ss_pred             EEEEECCCCCccCcCCccCcCCCEEEEEEccCCCC---CeEEEEECCEEEEechHHeEECCCcC
Confidence            446789999999999999999999999986  444   49999999999999999999886543

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.52  E-value=3.2e-08  Score=77.39  Aligned_cols=57  Identities=35%  Similarity=0.738  Sum_probs=50.8

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2p_A            8 EEFVAIADYAATDETQLSFLRGEKILILRQTTAD---WWWGERAGCCGYIPANHVGKHSG   64 (68)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSS---EEEEECTTCCEEEESSSEECCCC
T ss_pred             CEEEECceECCCCcCCcCCCCCCEEEEEEcCCCC---EEEEEECCeEEEEehHHeEECCC
Confidence            3467899999999999999999999999887554   99999999999999999988754

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.52  E-value=1.8e-08  Score=79.79  Aligned_cols=60  Identities=27%  Similarity=0.648  Sum_probs=52.9

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+....|.
T Consensus        11 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~p~   70 (72)
T 2dl8_A           11 EAIAKFDYVGRTARELSFKKGASLLLYQRASDD---WWEGRHNGIDGLIPHQYIVVQDTSGPS   70 (72)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEEEEETT---EEEEEETTEEEEECSSSEEECCSSSCC
T ss_pred             EEEECccCCcCCCCEeccCCCCEEEEEeecCCC---EEEEEECCEEEEEchHHeEEcCCCCCC
Confidence            367899999999999999999999999886544   999999999999999999988766554

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.52  E-value=3e-08  Score=80.34  Aligned_cols=62  Identities=31%  Similarity=0.471  Sum_probs=53.0

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+.+ .+..||.+++.|+.|+||.+||+.+....+
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   79 (81)
T 1x43_A           18 RKARVLYDYDAANSTELSLLADEVITVFSVVG-MDSDWLMGERGNQKGKVPITYLELLNSGPS   79 (81)
T ss_dssp             EEEEESSCCCCSSTTBCCCCTTCEEEEECCTT-CCTTEEEEEETTEEEEEEGGGEEECCCCCC
T ss_pred             eEEEEcccCCCCCCCcCCCCCCCEEEEEEcCC-CCCCcEEEEECCCEEEEehHHEEECCCCCC
Confidence            34688999999999999999999999998742 123499999999999999999999876554

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=98.52  E-value=2.7e-08  Score=78.83  Aligned_cols=60  Identities=28%  Similarity=0.697  Sum_probs=51.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+....+.
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~~~   66 (73)
T 3thk_A            7 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLDPAQSA   66 (73)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEECCC----
T ss_pred             EEEECcCCCcCCCCccCCCCCCEEEEEECCCCC---eEEEEECCcEEEEehHHeEECCCCCCC
Confidence            367899999999999999999999999887555   999999999999999999988765443

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=3.3e-08  Score=81.54  Aligned_cols=58  Identities=29%  Similarity=0.602  Sum_probs=52.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||+++..|+.|+||.+||+.+....
T Consensus        19 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~g---Ww~g~~~g~~G~~P~~yv~~~~~~~   76 (88)
T 2cub_A           19 PAYVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSNYVTEEGDSP   76 (88)
T ss_dssp             EEEESSCCCCCSTTBCCCCTTEEEEEEEECTTS---EEEEEETTEEEEEEGGGEEECCCCC
T ss_pred             EEEEccccCCCCCCCcCCCCCCEEEEEEccCCC---eEEEEECCcEEEEehHHEEECCCcc
Confidence            367899999999999999999999999987655   9999999999999999999886554

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=98.51  E-value=2.6e-08  Score=75.27  Aligned_cols=53  Identities=42%  Similarity=0.869  Sum_probs=48.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus         5 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            5 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEECcCCCCCCCCCcCCCCCCEEEEEEecCCC---EEEEEECCcEEEechHHeEEC
Confidence            56899999999999999999999999886554   999999999999999999764

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.51  E-value=3.4e-08  Score=79.45  Aligned_cols=57  Identities=28%  Similarity=0.605  Sum_probs=51.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++++|+.|+||.+||+.+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            9 RAKALLDFERHDDDELGFRKNDIITIISQKDEH---CWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEEECCC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEecCCC---EEEEEECCCEEEEehHHEEECCCc
Confidence            467899999999999999999999999876555   999999999999999999987653

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=98.51  E-value=2.2e-08  Score=78.50  Aligned_cols=59  Identities=31%  Similarity=0.581  Sum_probs=48.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      -+.|+|+|.+....+|.|++|+++.|+.+.    .+||.++ ..|+.|+||.+|+..+...++.
T Consensus         6 ~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~----~~Ww~~~~~~g~~G~~Psnyv~~~~~~~~~   65 (67)
T 2b86_A            6 IVIAKWDYTAQQDQELDIKKNERLWLLDDS----KTWWRVRNAANRTGYVPSNYVERKLEHHHH   65 (67)
T ss_dssp             EEEESSCBCCSSTTSCCBCTTCEEEEEECS----SSSCEEECTTSCEEECCCCSEEEC------
T ss_pred             EEEEeeeECCCCCCccccCCCCEEEEEecC----CCeEEEEeCCCCEEEeChHHEeEcCCCCCC
Confidence            367899999999999999999999999873    3599999 6899999999999998877653

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=98.51  E-value=2.6e-08  Score=75.25  Aligned_cols=53  Identities=49%  Similarity=0.870  Sum_probs=47.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus         6 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            6 VKALYDYDAQTGDELTFKEGDTIIVHQKDPAG---WWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCTTS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEECccCCCCCcCCcCCCCCCEEEEEEecCCC---EEEEEECCcEEEEeHHHEEEC
Confidence            57899999999999999999999999886554   999999999999999998753

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.51  E-value=3.1e-08  Score=82.54  Aligned_cols=59  Identities=34%  Similarity=0.585  Sum_probs=51.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      .+.++|+|.+...++|.|++|+++.|+.+.+ .+.+||+++++|+.|+||.+||+.+...
T Consensus         7 ~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~-~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            7 GYRALYPFEARNHDEMSFNSGDIIQVDEKTV-GEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             CEEESSCBCCCSSSCCCBCTTCEEEECSSCC-CSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEeEccC-CCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            3678999999999999999999999998741 1334999999999999999999988765

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=2e-08  Score=78.68  Aligned_cols=57  Identities=30%  Similarity=0.542  Sum_probs=51.2

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.+++.|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dmo_A            8 EAHRVLFGFVPETKEELQVMPGNIVFVLKKGNDN---WATVMFNGQKGLVPCNYLEPVSG   64 (68)
T ss_dssp             EEEEECSSCCCCSSSSCCCCTTCEEEECEECSSS---CEEEEETTEEEEECSTTEEECCC
T ss_pred             CEEEECcCCCcCCcCCCCCCCCCEEEEEEeCCCC---EEEEEeCCCEEEeehHHeEECCC
Confidence            3467899999999999999999999999887655   99999999999999999998754

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=4e-08  Score=79.60  Aligned_cols=58  Identities=29%  Similarity=0.770  Sum_probs=51.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+....
T Consensus        12 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~   69 (81)
T 2ysq_A           12 SAEAVWDHVTMANRELAFKAGDVIKVLDASNKD---WWWGQIDDEEGWFPASFVRLWVNQE   69 (81)
T ss_dssp             EEEESSCCCCSSSSSCCCCTTCEEEEEECCSSS---EEEEECSSCEEEEEGGGEEESSCCC
T ss_pred             EEEEeeeECCCCCCcCCCCCCCEEEEEEEcCcC---EEEEEECCCEEEechHHEEEcCCcc
Confidence            367899999999999999999999999886554   9999999999999999999886643

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.51  E-value=2.5e-08  Score=80.30  Aligned_cols=57  Identities=35%  Similarity=0.659  Sum_probs=51.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      .+.++|+|.+...++|.|++|+++.|+.+.+++   ||++++.|+.|+||.+||+.+..-
T Consensus        19 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~g---Ww~g~~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           19 KVVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             EEEECSCBCCSSTTBCCBCSSCEEEEEEECSSS---EEEEEETTEEEEEETTSEEECSSS
T ss_pred             EEEECccCCccCcCcccccCCCEEEEEEeCCCC---EEEEEECCcEEEeChHHEEEcCCC
Confidence            367899999999999999999999999887555   999999999999999999987643

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.51  E-value=3.8e-08  Score=79.24  Aligned_cols=61  Identities=30%  Similarity=0.577  Sum_probs=53.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-CCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-g~~G~~P~~~l~~~~~~~~~  510 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+  +..||+++.. |+.|+||.+||+.+....|.
T Consensus        15 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   76 (78)
T 2dl5_A           15 TCKVVYSYKASQPDELTIEEHEVLEVIEDGD--MEDWVKARNKVGQVGYVPEKYLQFPTSSGPS   76 (78)
T ss_dssp             EEEECSCBCCCSTTBCCBCSSEEEEEEECCS--SSSEEEEECTTCCEEEEETTTSCCSCCCCSC
T ss_pred             EEEEceeECCCCCCCCCCCCCCEEEEEeccC--CCCcEEEEeCCCCEEEEEhHHEEECCCCCCC
Confidence            3678999999999999999999999998864  1349999987 99999999999998776654

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=98.51  E-value=2.8e-08  Score=74.91  Aligned_cols=54  Identities=26%  Similarity=0.540  Sum_probs=48.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|+++.+
T Consensus         4 a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            4 AFVXFAYVAEREDELSLVXGSRVTVMEXCSDG---WWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEEECTTS---EEEEEETTEEEEEEGGGEEECC
T ss_pred             EEECccCCCCCCCEeeEeCCCEEEEeEcCCCC---EEEEEECCcEEEEehHHEEECC
Confidence            46789999999999999999999999887555   9999999999999999998765

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=98.51  E-value=3e-08  Score=80.15  Aligned_cols=60  Identities=35%  Similarity=0.690  Sum_probs=49.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      -+.++|+|.+....+|.|+.|+++.|+.+.+++   ||+++.  .|+.|+||.+|++.+..++.-
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~---Ww~g~~~~~g~~G~~P~~yv~~~~~~~~~   68 (79)
T 3cqt_A            7 LFEALYDYEARTEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSIYLAPVDRLDYK   68 (79)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECTTSS---EEEEEETTTCCEEEEEGGGEEEC------
T ss_pred             EEEECccCCCCCcCcCCCCCCCEEEEEEecCCC---eEEEEECCCCCEEEeehHHeEECCccccC
Confidence            367899999999999999999999999886554   999998  899999999999999877654

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.51  E-value=2.6e-08  Score=78.57  Aligned_cols=56  Identities=32%  Similarity=0.756  Sum_probs=48.2

Q ss_pred             hhhhhhhhccccc-ccccccCceEEEeecCCc--ccccceeecc-CCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~-eL~~k~g~~i~vl~~~~~--~e~~ww~~r~-~g~~G~~P~~~l~~~  504 (514)
                      ..++|+|.+.+.. +|.|++|+++.|+.+.+.  ++..||.++. .|+.|+||.+||+.+
T Consensus        10 ~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A           10 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             EEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             EEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            4679999999999 999999999999988652  2346999998 899999999998754

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=98.51  E-value=2.5e-08  Score=75.41  Aligned_cols=53  Identities=26%  Similarity=0.535  Sum_probs=47.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus         5 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            5 VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPE---WYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEEECSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEECceECCCCCCCccCCCCCEEEEEEecCCC---EEEEEECCcEEEeeHHHEEEc
Confidence            56899999999999999999999999886554   999999999999999998754

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=98.50  E-value=2.8e-08  Score=78.45  Aligned_cols=60  Identities=13%  Similarity=0.277  Sum_probs=50.6

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      .-+.++|+|.+...++|.|+.|+++.|+.+.+++   ||.|+  ..|+.|+||.+||+.+....+
T Consensus         7 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~g---W~~g~~~~~g~~G~fP~~yv~~~~~~~~   68 (71)
T 2fpf_A            7 QTHRAIFRFVPRHEDELELEVDDPLLVELQAEDY---WYEAYNMRTGARGVFPAYYAIEVTKEPE   68 (71)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECTTS---EEEEEETTTTEEEEEEGGGEEECC----
T ss_pred             eEEEECeeECccCCCcccCcCCcEEEEeEecCCC---EEEEEECCCCCEEEeehHHEEECCCCCC
Confidence            3467899999999999999999999999887655   99999  789999999999998876544

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.50  E-value=3.8e-08  Score=77.54  Aligned_cols=59  Identities=27%  Similarity=0.554  Sum_probs=52.0

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ..+.++|+|.+....+|.|+.|+++.|+.+.+++   ||+++..|+.|+||.+||+.+..-.
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~   67 (71)
T 2dnu_A            9 EKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEG---WWYIRYLGKEGWAPASYLKKAKDSG   67 (71)
T ss_dssp             EEEECSSCBCCSSTTBCCBCTTCEEEECCCCSSS---EEEEEETTEEEEEEGGGCEECCCCC
T ss_pred             CEEEECCccCCCCCCCCcCCCCCEEEEeECCCCC---eEEEEECCcEEEEEHHHeEEccCCC
Confidence            3467899999999999999999999999876554   9999999999999999999886543

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=98.50  E-value=2.9e-08  Score=75.56  Aligned_cols=56  Identities=32%  Similarity=0.813  Sum_probs=48.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.+ .+..||.++..|+.|+||.+|++.+
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            5 KAVALYSFAGEESGDLPFRKGDVITILKKSD-SQNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCS-CTTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECccCCcCCcCEeeEcCCCEEEEEEeCC-CCCCeEEEEECCEEEEEeHHHEEEC
Confidence            3578999999999999999999999998862 1234999999999999999998753

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.50  E-value=3.3e-08  Score=77.36  Aligned_cols=55  Identities=31%  Similarity=0.652  Sum_probs=49.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      -+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~   63 (68)
T 1x2k_A            9 VFRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSNYVAEQS   63 (68)
T ss_dssp             EEEESSCCCCCSTTBCCCCSSCEEEEEECSCSS---EEEEESSSCEEEEETTTEEECC
T ss_pred             EEEECceECCCCCCcccCCCCCEEEEEEcCCCC---EEEEEECCcEEEEehHHeEEcC
Confidence            357899999999999999999999999886554   9999999999999999999874

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=98.50  E-value=3.3e-08  Score=77.26  Aligned_cols=56  Identities=23%  Similarity=0.556  Sum_probs=50.3

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+..
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2dl3_A            9 PARAKFDFKAQTLKELPLQKGDIVYIYKQIDQN---WYEGEHHGRVGIFPRTYIELLSG   64 (68)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSTT---EEEEECSSCEEEEETTTEEECCS
T ss_pred             EEEECccCCCCCcCCccCCCCCEEEEeEecCCC---EEEEEECCCEEEEchHHEEECCC
Confidence            467899999999999999999999999876554   99999999999999999998753

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=98.49  E-value=2.8e-08  Score=77.66  Aligned_cols=56  Identities=29%  Similarity=0.592  Sum_probs=50.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.+++   ||.+++.|+.|+||.+||+.+..
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 2djq_A            9 RAKALCNYRGKNPGDLKFNKGDVILLRRQLDEN---WYQGEINGVSGIFPASSVEVISG   64 (68)
T ss_dssp             EEEECSCCCSCCTTCCCCCTTCEEEEEECCCSS---EEEEEETTEEEEEESSSEETTCS
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEEEecCCC---EEEEEECCcEEEeehHHEEEcCC
Confidence            357899999999999999999999999886554   99999999999999999988754

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=98.49  E-value=3.4e-08  Score=73.57  Aligned_cols=52  Identities=31%  Similarity=0.608  Sum_probs=46.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+  +..||.++..|+.|+||.+||+
T Consensus         3 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            3 MEAIYAYEAQGDDEISIDPGDIITVIRGDD--GSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEBCSCBCCCSTTBCCBCTTCEEEEEECCC--SSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEECccCCcCCCCCccCCCCCEEEEEEecC--CCCEEEEEECCeEEEeeHHHcC
Confidence            568999999999999999999999998864  1349999999999999999974

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=98.49  E-value=4.9e-08  Score=76.83  Aligned_cols=59  Identities=27%  Similarity=0.601  Sum_probs=51.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecC-Ccccccceeecc--CCCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKG-DENEREWWWSKL--NNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~-~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ...++|+|.+....+|.|+.|+++.|+.+. ++   +||.++.  .|+.|+||.+||+.+....+
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   69 (71)
T 2jt4_A            8 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSK---DWWMCQLVDSGKSGLVPAQFIEPVRDKKH   69 (71)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEESSSCS---SEEEEEETTTCCEEEEEGGGEEETTTSSC
T ss_pred             EEEEcccCCCCCCCcccCCCCCEEEEEECCCCC---CCEEEEECCCCCeEEechHHeEECCCcCC
Confidence            467899999999999999999999999875 44   4999998  89999999999998876543

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.49  E-value=6.5e-08  Score=81.12  Aligned_cols=58  Identities=21%  Similarity=0.461  Sum_probs=50.3

Q ss_pred             chhhhhhhhccc------ccccccccCceEEEe-ecCCcccccceeecc-CCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANN------TDELSFKTGECIIVL-RKGDENEREWWWSKL-NNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~------~~eL~~k~g~~i~vl-~~~~~~e~~ww~~r~-~g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.|||+|.+..      ..+|.|+.|+++.|+ .+.+++   ||.+++ .|+.|+||.+||+.+..-.
T Consensus        19 ~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~g---Ww~g~~~~g~~G~~Psnyv~~~~~~~   84 (96)
T 1wie_A           19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDG---FYEGELLDGQRGLVPSNFVDFVQDNE   84 (96)
T ss_dssp             EEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSSS---CCEEEETTCCBCBCCTTSEECCCSCC
T ss_pred             EEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecCCCC---EEEEEECCCCEEEEchHHEEEcCCCC
Confidence            367899999988      999999999999999 655544   999998 8999999999999886543

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=98.49  E-value=2.6e-08  Score=77.95  Aligned_cols=55  Identities=25%  Similarity=0.596  Sum_probs=48.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCC-----CCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-----KEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g-----~~G~~P~~~l~~~~  505 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.|+..+     +.|+||.+||+.++
T Consensus         9 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~~g~~~~~G~fP~~yv~~~~   68 (68)
T 1tg0_A            9 KVVAQFPYKSDYEDDLNFEKDQEIIVTSVEDAE---WYFGEYQDSNGDVIEGIFPKSFVAVQG   68 (68)
T ss_dssp             EEEESSCBCCSCTTBCCBCTTCEEEEEEECSSS---EEEEEEECTTSCEEEEEEEGGGEEECC
T ss_pred             EEEECeeECcCCcCCCCCCCCCEEEEEEecCCC---eEEEEECCCCCCCEEEEEchHHEEECC
Confidence            367899999999999999999999999876555   99999877     89999999998653

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=98.49  E-value=2.7e-08  Score=78.98  Aligned_cols=58  Identities=31%  Similarity=0.626  Sum_probs=51.7

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+..+
T Consensus        14 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~~~~~   71 (73)
T 3c0c_A           14 PSCKALYDFEPENDGELGFREGDLITLTNQIDEN---WYEGMLHGQSGFFPLSYVQVLVPL   71 (73)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEEECSSS---EEEEEETTEEEEEEGGGEEEEECC
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEecCCC---EEEEEECCCEEEeChHHEEECCCC
Confidence            4468899999999999999999999999886555   999999999999999999987644

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.49  E-value=5.5e-08  Score=81.76  Aligned_cols=61  Identities=39%  Similarity=0.736  Sum_probs=54.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA  511 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~~  511 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||++++.|+.|+||.+||+.+....+.+
T Consensus        36 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~~~s   96 (98)
T 1udl_A           36 QVIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSNYVKMTTDSSGPS   96 (98)
T ss_dssp             EEEESSCCCCSSTTSCCCCTTCEEEECBCCSSS---EEBCBSSSCBCCEETTSEEECCCCSSCC
T ss_pred             EEEECCCCCCCCCCccCCcCCCEEEEEEecCCC---EEEEEECCcEEEEehHHeEEcCCCCCCC
Confidence            367899999999999999999999999886554   9999999999999999999998776654

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=98.49  E-value=3.4e-08  Score=75.53  Aligned_cols=55  Identities=31%  Similarity=0.727  Sum_probs=49.3

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ....++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            7 ELVLVLYDYQEKSPRELTVKKGDILTLLNSTNKD---WWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCCCCccCCCCCEEEEeEecCCC---eEEEEECCEEEEEEHHHEEEC
Confidence            3467899999999999999999999999887554   999999999999999999865

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.49  E-value=4.3e-08  Score=77.09  Aligned_cols=58  Identities=31%  Similarity=0.643  Sum_probs=50.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.. .+..||+++..|+.|+||.+||+.+..
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~W~~g~~~g~~G~~P~~yv~~~~~   66 (70)
T 2da9_A            9 YCKVIFPYEAQNDDELTIKEGDIVTLINKDC-IDVGWWEGELNGRRGVFPDNFVKLLSG   66 (70)
T ss_dssp             EEEECSCCCCSSTTBCCCCTTEEEEEEECCC-SSTTEEEEECSSCEEEEEGGGEEECCC
T ss_pred             EEEECcCCCCCCcCEeeEcCCCEEEEEECCC-CCCCeEEEEECCcEEEechHHeEECCC
Confidence            4678999999999999999999999998741 123499999999999999999998764

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=98.48  E-value=3.4e-08  Score=74.63  Aligned_cols=53  Identities=34%  Similarity=0.742  Sum_probs=47.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.+
T Consensus         5 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            5 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEECceECCCCcCCcCCCCCCEEEEEEcCCCC---EEEEEECCcEEEEchHHeEEC
Confidence            46899999999999999999999999886554   999999999999999999765

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=3.4e-08  Score=78.96  Aligned_cols=55  Identities=24%  Similarity=0.586  Sum_probs=48.5

Q ss_pred             chhhhhhhhccc-------ccccccccCceEEEeec-CCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANN-------TDELSFKTGECIIVLRK-GDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~-------~~eL~~k~g~~i~vl~~-~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .+.|+|+|.+..       ..+|.|++|+++.|+.+ .++   +||.+++.|+.|+||.+||+.++
T Consensus         9 ~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~---gWw~g~~~g~~G~fP~~yv~~~~   71 (75)
T 2ege_A            9 IMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQ---GFYYGELGGHRGLVPAHLLDHMS   71 (75)
T ss_dssp             EEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCCTT---CEEEEESSSCEEEEETTTEEECC
T ss_pred             EEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccCCC---CEEEEEECCcEEEEChHHeEEcc
Confidence            467899999999       99999999999999963 444   49999999999999999999874

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=4.6e-08  Score=80.64  Aligned_cols=58  Identities=19%  Similarity=0.373  Sum_probs=50.7

Q ss_pred             hhhhhhhh--cccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         449 VYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       449 ~taL~d~~--~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      +.++|+|.  +....+|.|++|+++.|+.+.+++   ||.|++.|+.|+||.+||+.+..-.+
T Consensus        19 ~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~fP~~yv~~~~~~~~   78 (88)
T 2dbk_A           19 AKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFTHVKIFDPQNP   78 (88)
T ss_dssp             EEECSCBCCCTTCSSBCCBCTTCEEEEEEECTTS---CEEEECSSCEEEECTTTEEECCSSCC
T ss_pred             EEEcccccCCCCCCCcccCCCCCEEEEEEecCCC---EEEEEeCCCEEEEehHHeEECCCCCc
Confidence            57899999  559999999999999999887655   99999999999999999998865443

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=98.48  E-value=4.1e-08  Score=76.97  Aligned_cols=57  Identities=35%  Similarity=0.721  Sum_probs=50.8

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.++|+|.+....+|.|+.|+++.|+.+.+++   ||+++..|+.|+||.+||+.+..
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            9 QEYRALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CEEECCSCBCCSSSSSCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGCCBCCC
T ss_pred             cEEEECccCCccCcCccCCCCCCEEEEEECCCCC---EEEEEECCCEEEEehHHeEEcCC
Confidence            3467899999999999999999999999886554   99999999999999999988754

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=98.48  E-value=4.5e-08  Score=76.29  Aligned_cols=56  Identities=32%  Similarity=0.701  Sum_probs=49.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~  505 (514)
                      ....++|+|.+....+|.|++|+++.|+.+.+++   ||+++ ..|+.|+||.+||+.+.
T Consensus         9 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~~   65 (67)
T 1aww_A            9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLP---WWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSS---EECCBCTTSCBCCEETTTBCCSC
T ss_pred             eEEEECccCCCCCCCCccCCCCCEEEEEEccCCC---cEEEEECCCCEEEEchHhEEEcC
Confidence            3468899999999999999999999999886554   99998 89999999999998754

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.48  E-value=4.4e-08  Score=76.38  Aligned_cols=53  Identities=34%  Similarity=0.742  Sum_probs=48.6

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~  504 (514)
                      +.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++ ..|+.|+||.+||+.+
T Consensus         5 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~   58 (67)
T 1gl5_A            5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLH---WWRARDKYGSEGYIPSNYVTGK   58 (67)
T ss_dssp             EEECSCBCCSSSSBCCBCTTCEEEEEECSSSS---EEEEECSSSCEEEEETTSEESS
T ss_pred             EEECccCCCCCCCeecCCcCCEEEEEEccCCC---cEEEEECCCCEEEEEhHhEEEc
Confidence            57899999999999999999999999986554   99999 6999999999999987

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.48  E-value=2.2e-08  Score=80.24  Aligned_cols=59  Identities=22%  Similarity=0.578  Sum_probs=52.3

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      +.++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.+....+.
T Consensus        13 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~~~   71 (76)
T 2epd_A           13 AVACFAYTGRTAQELSFRRGDVLRLHERASSD---WWRGEHNGMRGLIPHKYITLPAGTEKQ   71 (76)
T ss_dssp             EEESSCEECSSTTBCEECTTCEEEEEEEEETT---EEEEEETTEEEEEESSSEECCSSCSCC
T ss_pred             EEECcCCCCCCCCccCCCCCCEEEEEEeCCCC---EEEEEECCcEEEEehHHEEEcCCCCCC
Confidence            67899999999999999999999999886544   999999999999999999988765543

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=98.48  E-value=3.6e-08  Score=81.69  Aligned_cols=62  Identities=31%  Similarity=0.612  Sum_probs=52.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+ .+..||+++ +.|+.|+||.+||+.+....+.
T Consensus        19 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~~   81 (91)
T 1wx6_A           19 VVQTLYPFSSVTEEELNFEKGETMEVIEKPE-NDPEWWKCKNARGQVGLVPKNYVVVLSDGPAL   81 (91)
T ss_dssp             EEEESSCCCCSSSSBCCCCTTCEEEEEECCS-SCTTEEEEECTTCCEEEEEGGGEEEEEESSSC
T ss_pred             EEEEeecCCcCCCCcccCCCCCEEEEEECCC-CCCCcEEEEeCCCCEEEEchHHEEECCCcCCC
Confidence            3688999999999999999999999998831 134499998 8999999999999988765544

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.48  E-value=3.8e-08  Score=79.55  Aligned_cols=58  Identities=33%  Similarity=0.685  Sum_probs=50.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+. +..||+++..|+.|+||.+||+.+..
T Consensus        19 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~   76 (80)
T 2d8h_A           19 EVTALYSFEGQQPGDLNFQAGDRITVISKTDS-HFDWWEGKLRGQTGIFPANYVTMNSG   76 (80)
T ss_dssp             EEECSSCEECSSTTBCEECTTCEEEEEECCSC-SSSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             EEEECccCCcCCCCeeeEcCCCEEEEeECcCC-CCCeEEEEECCEEEEEchhHeEEcCC
Confidence            46789999999999999999999999988641 24599999999999999999987754

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=98.48  E-value=4.9e-08  Score=79.75  Aligned_cols=56  Identities=23%  Similarity=0.568  Sum_probs=49.6

Q ss_pred             chhhhhhh-hcccccccccccCceEEEeecCCcccccceeeccC------CCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDY-EANNTDELSFKTGECIIVLRKGDENEREWWWSKLN------NKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~-~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~------g~~G~~P~~~l~~~~~  506 (514)
                      .+.|+|+| .+....+|.|++|+++.|+.+.+++   ||.|++.      |+.|+||.+||+.+.+
T Consensus        20 ~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~g---Ww~G~~~~~~~~tg~~G~fPsnyV~~~~~   82 (83)
T 2ke9_A           20 KVRALKDFWNLHDPTALNVRAGDVITVLEQHPDG---RWKGHIHESQRGTDRIGYFPPGIVEVVSK   82 (83)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEESCSSCSS---CEEEEECCSSTTSCCCEEECGGGEESSCC
T ss_pred             EEEEccccCCCCCCCcccccCCCEEEEEEecCCC---eEEEEECCCCCCCCCEEEechHHEEECCC
Confidence            36789999 7899999999999999999887655   9999986      6999999999998765

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=98.47  E-value=4.8e-08  Score=77.52  Aligned_cols=56  Identities=23%  Similarity=0.556  Sum_probs=49.5

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ..++|+|.+ ...+|.|+.|+++.|+.+.+++   ||.++..|+.|+||.+||+.+...+
T Consensus         3 a~alydy~~-~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~   58 (73)
T 2kxd_A            3 APPLPPYSA-GGREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLDSGT   58 (73)
T ss_dssp             CCCCCSSCC-CSCCCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEECCSSC
T ss_pred             EEEeeeeCC-CCCEeeEcCCCEEEEEEecCCC---EEEEEECCCEEEEehHHeEEcCCCC
Confidence            467899998 8999999999999999887554   9999999999999999999886553

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=98.47  E-value=4e-08  Score=75.11  Aligned_cols=55  Identities=35%  Similarity=0.630  Sum_probs=49.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCC-CchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G-~~P~~~l~~~~  505 (514)
                      ...|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.| +||.+||+.++
T Consensus         5 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            5 AVKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEEGGGEEECC
T ss_pred             EEEECcCCCcCCCCCcCCcCCCEEEEEEecCCC---EEEEEECCeEEEEEChHHcEECC
Confidence            357899999999999999999999999886554   99999999987 99999998764

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=3.7e-08  Score=78.24  Aligned_cols=59  Identities=20%  Similarity=0.482  Sum_probs=51.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+. +..||.++..|+.|+||.+||+.+...
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   67 (73)
T 2dm1_A            9 TAVARYNFAARDMRELSLREGDVVRIYSRIGG-DQGWWKGETNGRIGWFPSTYVEEEGIQ   67 (73)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEECCBSSSS-SSSCEEEEETTEEEEECSSSEEECCCC
T ss_pred             EEEECccCCcCCCCcCCCCCCCEEEEEEecCC-CCCeEEEEECCeEEEeehHHEEEcCCC
Confidence            46789999999999999999999999987532 234999999999999999999987653

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=98.47  E-value=3.2e-08  Score=78.00  Aligned_cols=55  Identities=29%  Similarity=0.561  Sum_probs=49.8

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.+++   ||.++++|+.|+||.+|++.+.
T Consensus        15 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~~~   69 (72)
T 4glm_A           15 YGVALYRFQALEPNELDFEVGDKIRILATLEDG---WLEGSLKGRTGIFPYRFVKLCP   69 (72)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECSTT---EEEEEETTEEEEEEGGGEEEEC
T ss_pred             EEEECccCCCCCCCcCCCCCCCEEEEEEccCCC---EEEEEECCcEEEEChHHeEECC
Confidence            367899999999999999999999999887655   9999999999999999998764

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=98.46  E-value=4.2e-08  Score=77.79  Aligned_cols=59  Identities=32%  Similarity=0.674  Sum_probs=50.3

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+.. .+.+||.|+..|+.|+||.+||+.++.
T Consensus        10 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A           10 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDC-IDVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCS-SSTTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             cEEEECccCCCCCCCeeeECCCCEEEEEECCC-CCCCEEEEEECCeEEEEchHHEEECCc
Confidence            34678999999999999999999999998751 123499999999999999999988753

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.46  E-value=3e-08  Score=79.35  Aligned_cols=56  Identities=32%  Similarity=0.609  Sum_probs=50.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||.+++.|+.|+||.+||+.+..
T Consensus        12 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A           12 IVKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EEECCSCBCCSSTTSCCBCSSCCEEESSCCSSS---CEEEEETTEEEEECTTTSEECCH
T ss_pred             EEEECccCCcCCCCcccCCCCCEEEEEEecCCC---EEEEEECCCEEEechHHEEECCc
Confidence            367899999999999999999999999876554   99999999999999999988754

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=98.46  E-value=3.9e-08  Score=74.35  Aligned_cols=52  Identities=33%  Similarity=0.698  Sum_probs=47.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      +.|+|+|.+....+|.|+.|+++.|+.+.+++   ||.++..|+.|+||.+|++.
T Consensus         6 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            6 FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEE
T ss_pred             EEECccCCCCCCCCccCCCCCEEEEEEeCCCC---EEEEEECCCEEEEehHHEEe
Confidence            57899999999999999999999999886554   99999999999999999864

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=98.46  E-value=3.9e-08  Score=77.57  Aligned_cols=55  Identities=22%  Similarity=0.520  Sum_probs=47.3

Q ss_pred             chhhhhhhhcccccccccccCceEEEee-cCCcccccceeec-cCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLR-KGDENEREWWWSK-LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~-~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~  505 (514)
                      .+.++|+|.+....+|.|++|+++.|+. +.++   +||.++ ..|+.|+||.+||+...
T Consensus        13 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP---NWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEECSST---TEEEEECTTSCEEEEETTSEEC--
T ss_pred             EEEEceeECcCCCCcCCCCCCCEEEEeECCCCC---CCEEEEeCCCCEEEEehHHeEEcc
Confidence            3678999999999999999999999998 4444   499999 78999999999998754

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=98.46  E-value=4.4e-08  Score=77.97  Aligned_cols=59  Identities=25%  Similarity=0.509  Sum_probs=51.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC--CCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~~~l~~~~~~~~  509 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||+++..  |+.|+||.+||+.+..-.+
T Consensus         7 ~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~g---Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   67 (73)
T 2lcs_A            7 RAVALYDFEPENDNELRLAEGDIVFISYKHGQG---WLVAENESGSKTGLVPEEFVSYIQPELE   67 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEETTT---EEEEECTTSSCEEEEESTTEEECCSSCC
T ss_pred             EEEECccCCCCCCCccCCcCCCEEEEEEEcCCC---EEEEEECCCCCEEEeeHHHEEECCCCCC
Confidence            467899999999999999999999999886555   9999985  8999999999998865444

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=98.46  E-value=2.9e-08  Score=76.54  Aligned_cols=55  Identities=35%  Similarity=0.640  Sum_probs=49.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .+.++|+|.+....+|.|+.|+++.|+.+.+++   ||.++..|+.|+||.+|++.+.
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            9 QCKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEEEETT---EEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEEeeeeCCCCcCCcCCCCCCEEEEEEecCCC---EEEEEECCCEEEeehHHEEECc
Confidence            367899999999999999999999999876544   9999999999999999998875

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.46  E-value=9.6e-08  Score=75.98  Aligned_cols=58  Identities=24%  Similarity=0.618  Sum_probs=51.0

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ....++|+|.+....+|.|++|+++.|+.+. +   .||+++.+|+.|+||.+||+.+....
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~---~Ww~g~~~g~~G~~P~~yv~~~~~~~   68 (74)
T 1j3t_A           11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-E---NWWFGEVHGGRGWFPKSYVKIIPGSE   68 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-S---SEEEEESTTCCCEEEGGGEEECCCST
T ss_pred             eEEEECCCCCCCCCCccCCCCCCEEEEEecC-C---CEEEEEECCcEEEEchHHeEECCCCC
Confidence            3467899999999999999999999999883 3   49999999999999999999886544

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=98.46  E-value=5e-08  Score=76.97  Aligned_cols=61  Identities=30%  Similarity=0.528  Sum_probs=52.9

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCC-CchhhhhhcCCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRNLLGLYPRVQPSA  511 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G-~~P~~~l~~~~~~~~~~  511 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.| +||.+||+.+.......
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~gG~~P~~yv~~~~~~~~~~   69 (71)
T 1hsq_A            8 AVKALFDYKAQREDELTFIKSAIIQNVEKQEGG---WWRGDYGGKKQLWFPSNYVEEMVNPEGIH   69 (71)
T ss_dssp             CCCCSSCCCCSSSSSCCCCTTCCCBSCCCBTTT---EECCBCSSSCSCCEETTTCCSCSCCCCCC
T ss_pred             EEEECCCCCcCCCCccCCCCCCEEEEEEecCCC---EEEEEECCeEEeEEChHHcEECCCccccc
Confidence            367899999999999999999999999886554   99999999987 99999999887655543

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=98.45  E-value=2.8e-08  Score=75.74  Aligned_cols=52  Identities=31%  Similarity=0.692  Sum_probs=47.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                      ...|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~   59 (60)
T 2gnc_A            8 FAIAKFDYVGRSARELSFKKGASLLLYHRASED---WWEGRHNGIDGLVPHQYIV   59 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEEETT---EEEEEETTEEEEEEGGGEE
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEEEecCCC---EEEEEECCeEEEEeHhhEE
Confidence            367899999999999999999999999886544   9999999999999999985

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=98.45  E-value=3.2e-08  Score=84.99  Aligned_cols=62  Identities=24%  Similarity=0.447  Sum_probs=52.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC--------CCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--------NKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--------g~~G~~P~~~l~~~~~~~~  509 (514)
                      .+.|||+|.+....+|.|++|+++.|+.+.++....||.|++.        |+.|+||.+||+.+..+++
T Consensus        24 ~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~~~   93 (108)
T 1i1j_A           24 MAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKP   93 (108)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSC
T ss_pred             EEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEccccCc
Confidence            3678999999999999999999999998732222249999987        8999999999998876654

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.45  E-value=3.7e-08  Score=78.06  Aligned_cols=58  Identities=29%  Similarity=0.489  Sum_probs=49.7

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+.  .+..||.+++.|+.|+||.+||+.+..
T Consensus        11 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~--~~~~Ww~g~~~g~~G~~P~~yv~~~~~   68 (72)
T 1ugv_A           11 RKAKALYACKAEHDSELSFTAGTVFDNVHPS--QEPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEBSCCBC--SSTTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             cEEEEccccCCcCCCEeCCcCCCEEEEEEec--CCCCeEEEEECCcEEEecHHHEEECCC
Confidence            3467899999999999999999999998742  133499999999999999999998754

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=98.45  E-value=3e-08  Score=77.49  Aligned_cols=57  Identities=32%  Similarity=0.573  Sum_probs=50.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+.++   .||.++..|+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wi7_A            8 RRCQVAFSYLPQNDDELELKVGDIIEVVGEVEE---GWWEGVLNGKTGMFPSNFIKELSG   64 (68)
T ss_dssp             CCEEESSCBCCSSTTBCCBCTTCEECCCEEEET---TEEEECSTTCCEEEETTSEEECCS
T ss_pred             CEEEECccCCcCCCCCccCcCCCEEEEEEcCCC---CeEEEEECCcEEEEchHHEEECCC
Confidence            346789999999999999999999999987544   499999999999999999998764

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=98.44  E-value=6.3e-08  Score=79.13  Aligned_cols=57  Identities=28%  Similarity=0.717  Sum_probs=51.3

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      -+.|+|+|.+....+|.|+.|+++.|+.+.+++   ||+++..|+.|+||.+||+.+...
T Consensus        19 ~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~g---Ww~g~~~g~~G~~P~~yv~~~~~~   75 (83)
T 1neg_A           19 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLAAA   75 (83)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEECCTT
T ss_pred             EEEEccccCCCCCCccccCCCCEEEEEEecCCC---EEEEEECCeEEEEEHHHEEECCCC
Confidence            467899999999999999999999999886554   999999999999999999988544

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=98.44  E-value=5.9e-08  Score=76.79  Aligned_cols=54  Identities=37%  Similarity=0.761  Sum_probs=48.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      -+.|+|+|.+....+|.|+.|+++.|+.+.+++   ||.++.  .|+.|+||.+||+.+
T Consensus        17 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           17 LFVALYDYEAITEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSSSS---EEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECccCCCCCCCcceEeCCCEEEEEEecCCC---eEEEEECCCCCEEEEEHHHeEEC
Confidence            367899999999999999999999999887554   999997  899999999999875

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=98.44  E-value=5.4e-08  Score=73.41  Aligned_cols=52  Identities=33%  Similarity=0.604  Sum_probs=46.6

Q ss_pred             hhhhhhh-hcccccccccccCceEEEeecCCcccccceeeccC--CCCCCchhhhhhc
Q psy7683         449 VYALYDY-EANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~-~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~~~l~~  503 (514)
                      +.++|+| .+....+|.|++|+++.|+.+.+++   ||.++..  |+.|+||.+||+.
T Consensus         3 ~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~~g---W~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            3 FEAAYDFPGSGSPSELPLKKGDVIYITREEPSG---WSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEESSCBCCCSCTTBCCBCTTCEEEEEEECTTS---EEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEecccCCCCCCCcCCCCCCCEEEEEEecCCC---eEEEEECCCCCEEEecHHHEEE
Confidence            4678999 8999999999999999999887555   9999987  9999999999875

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.44  E-value=5.6e-08  Score=77.82  Aligned_cols=57  Identities=37%  Similarity=0.657  Sum_probs=49.6

Q ss_pred             chhhhhhhhccc-------ccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANN-------TDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~-------~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.|+|+|.+..       ..+|.|++|+++.|+.+.+.  ..||++++.|+.|+||.+||+.+..
T Consensus         9 ~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~--~gWw~g~~~g~~G~~P~~yv~~~~~   72 (76)
T 2csi_A            9 RMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDE--DGFYYGELNGQKGLVPSNFLEEVSG   72 (76)
T ss_dssp             EEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCS--SSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             EEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCC--CCeEEEEECCcEEEEehHHEEECCC
Confidence            467899999988       89999999999999987542  2499999999999999999988753

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=98.44  E-value=5e-08  Score=74.88  Aligned_cols=53  Identities=43%  Similarity=0.776  Sum_probs=47.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+|++.
T Consensus         7 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~   59 (62)
T 1uj0_A            7 RVRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSNFVTT   59 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEeCCCC---EEEEEECCCEEEechhHEEE
Confidence            367899999999999999999999999876554   99999999999999999864

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=98.43  E-value=4.8e-08  Score=81.41  Aligned_cols=59  Identities=31%  Similarity=0.546  Sum_probs=52.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.++   +||.+++.|+.|+||.+||+.+.....
T Consensus        20 ~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~~---gWw~g~~~g~~G~fPsnyV~~~~~~~~   78 (92)
T 2o2o_A           20 RCQVAFSYLPQNDDELELKVGDIIEVVGEVEE---GWWEGVLNGKTGMFPSNFIKELSGESD   78 (92)
T ss_dssp             EEEECSCBCCCSSSCCCBCSSCEEECCCGGGS---SCBCCEETTEECCBCSSSEECCSSCSS
T ss_pred             EEEEccccCCCCCccccccCCCEEEEeEecCC---CEEEEEECCeEEEeehHHEEECCCCCc
Confidence            46889999999999999999999999987544   499999999999999999998876543

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.43  E-value=4.8e-08  Score=78.81  Aligned_cols=59  Identities=32%  Similarity=0.728  Sum_probs=49.9

Q ss_pred             chhhhhhhhccccc-ccccccCceEEEeecCCc--ccccceeecc-CCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~-eL~~k~g~~i~vl~~~~~--~e~~ww~~r~-~g~~G~~P~~~l~~~~~  506 (514)
                      -+.|+|+|.+.... +|.|++|+++.|+.+.+.  .+.+||+++. .|+.|+||.+||+.+.+
T Consensus        16 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             EEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             EEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            46889999999999 999999999999988654  1235999998 89999999999998864

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=98.42  E-value=8.1e-08  Score=75.25  Aligned_cols=58  Identities=29%  Similarity=0.591  Sum_probs=50.3

Q ss_pred             chhhhhhhh-cccccccccccCceEEEeecCCcccccceeeccC--CCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYE-ANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~-~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.|+|+|. +....+|.|+.|+++.|+.+.+++   ||+++..  |+.|+||.+|++.+...+
T Consensus         4 ~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~~~g~~G~~P~~yv~~~~~~~   64 (69)
T 1ruw_A            4 KFEAAYDFPGSGSSSELPLKKGDIVFISRDEPSG---WSLAKLLDGSKEGWVPTAYMTPYKDTR   64 (69)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECTTS---EEEEEETTSSCEEEEEGGGEEECCSCS
T ss_pred             EEEEccccCCCCCCCcccCCCCCEEEEEEecCCC---eEEEEECCCCCEEEEehHHeEEcCCcc
Confidence            357899995 999999999999999999887554   9999987  999999999999876543

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=98.42  E-value=6.1e-08  Score=73.71  Aligned_cols=54  Identities=39%  Similarity=0.698  Sum_probs=46.6

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-CCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-g~~G~~P~~~l~~~  504 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.++  ..||.++.. |+.|+||.+|++.+
T Consensus         6 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~--~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            6 VRALYDYDGQEQDELSFKAGDELTKLGEEDE--QGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             EEECSCBCCSSSSBCCBCTTCEEEECSCCCS--SSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             EEECcccCccCCCcccCCCCCEEEEEEccCC--CCceEEEeCCCCEEEecHHHEEEC
Confidence            5789999999999999999999999987432  349999998 99999999998753

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.42  E-value=1e-07  Score=74.51  Aligned_cols=56  Identities=41%  Similarity=0.726  Sum_probs=49.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~  506 (514)
                      .-+.++|+|.+....+|.|+.|+++.|+.+.    ..||+++ ..|+.|+||.+||+.+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~----~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            8 KYVKILYDFTARNANELSVLKDEVLEVLEDG----RQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             CCEECSSCBCCSSSSBCCBCTTCEEEEEECS----SSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEcC----CCEEEEEECCCCEEEEEHHHeEECCC
Confidence            3467899999999999999999999999873    3499998 589999999999998864

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.41  E-value=9e-08  Score=76.54  Aligned_cols=58  Identities=31%  Similarity=0.673  Sum_probs=51.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC---CCC------CCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKE------GYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~---g~~------G~~P~~~l~~~~~~~  508 (514)
                      -+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..   |+.      |+||.+||+.+..+.
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~~   75 (77)
T 2d8j_A            9 YFVALFDYQARTAEDLSFRAGDKLQVLDTSHEG---WWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGPS   75 (77)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCCEEEEECCSSS---EEEEEECSSCCSSCCCCSEEEEETTTEEECCCCC
T ss_pred             EEEEccCCCCCCCCccCCCCCCEEEEEECCCCC---eEEEEECCCCCcCcccCCceEECHHHeeEcCCcC
Confidence            467899999999999999999999999986555   9999987   899      999999999887654

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=98.41  E-value=9.9e-08  Score=74.62  Aligned_cols=55  Identities=35%  Similarity=0.702  Sum_probs=49.5

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~  507 (514)
                      +.++|+|.+....+|.|+.|+++.|+.+.    ..||.++ ..|+.|+||.+||+.+...
T Consensus        10 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~----~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A           10 MQVLYEFEARNPRELTVVQGEKLEVLDHS----KRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             EEESSCBCCCSSSBCCBCTTCEEEEEECS----SSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             EEECceECCCCcCcCCCCCCCEEEEEEcC----CCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            67899999999999999999999999883    3499999 8999999999999987653

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=98.41  E-value=8.3e-08  Score=73.54  Aligned_cols=54  Identities=31%  Similarity=0.694  Sum_probs=47.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~  504 (514)
                      .-..|+|+|.+....+|.|++|+++.|+.+.+    +||+++  ..|+.|+||.+||+.+
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~----~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            7 NLVIALHSYEPSHDGDLGFEKGEQLRILEQSG----EWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS----SEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEcccCCCCCCCCcCCCCCCEEEEEEcCC----CEEEEEECCCCCEEEEEHHHEEEC
Confidence            34688999999999999999999999998842    499999  6899999999998753

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=98.40  E-value=6.4e-08  Score=75.81  Aligned_cols=56  Identities=41%  Similarity=0.818  Sum_probs=49.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeecc-CCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~-~g~~G~~P~~~l~~~~  505 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++. .|+.|+||.+|++...
T Consensus         7 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            7 PTVVALYDYTANRSDELTIHRGDIIRVFFKDNED---WWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEECSSS---EEEEEEETTEEEEEEGGGEEEHH
T ss_pred             CEEEECccCCCCCcCcCCCCCCCEEEEEEecCCC---eEEEEeCCCCEEEEchHHeEECc
Confidence            3467899999999999999999999999887555   999998 8999999999998653

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=98.40  E-value=9.8e-08  Score=75.57  Aligned_cols=59  Identities=31%  Similarity=0.561  Sum_probs=51.1

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+ +   ..||+++ ..|+.|+||.+||+.+..+..
T Consensus         8 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~---~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   67 (72)
T 2jw4_A            8 VVVVAKFDYVAQQEQELDIKKNERLWLLDD-S---KSWWRVRNSMNKTGFVPSNYVERKNSARA   67 (72)
T ss_dssp             EEEECSSCCCCSSTTSCCCCTTCEEEEEEC-S---SSSEEEECTTSCEEEECTTSCEECCCCCS
T ss_pred             eEEEECcCCCcCCCCcccCCCCCEEEEEEC-C---CCEEEEEECCCCEEEEEhhHEEEcCCCcc
Confidence            346789999999999999999999999986 2   2499999 489999999999998876654

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=98.40  E-value=8.8e-08  Score=72.73  Aligned_cols=54  Identities=30%  Similarity=0.671  Sum_probs=47.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecC-Ccccccceeecc--CCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKG-DENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~-~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      ...++|+|.+....+|.|++|+++.|+.+. ++   .||.++.  .|+.|+||.+|++.+
T Consensus         4 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            4 RGIVQYDFMAESQDELTIKSGDKVYILDDKKSK---DWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEESSSCS---SEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEEeeeECCCCCCCccCCCCCEEEEEeCCCCC---CCEEEEECCCCCEEEEEHHHEEEC
Confidence            357899999999999999999999999873 44   4999998  899999999998753

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=98.40  E-value=7.3e-08  Score=79.97  Aligned_cols=61  Identities=31%  Similarity=0.701  Sum_probs=51.9

Q ss_pred             chhhhhhhhccccc-ccccccCceEEEeecCCc--ccccceeecc-CCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~-eL~~k~g~~i~vl~~~~~--~e~~ww~~r~-~g~~G~~P~~~l~~~~~~~  508 (514)
                      -+.++|+|.+.... +|.|++|+++.|+.+.+.  .+.+||+++. .|+.|+||.+||+.+....
T Consensus        16 ~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~~   80 (92)
T 1jqq_A           16 FARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRRK   80 (92)
T ss_dssp             EEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC-
T ss_pred             EEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCCC
Confidence            46889999999999 999999999999988654  1235999998 8999999999999987654

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.40  E-value=7.8e-08  Score=76.80  Aligned_cols=56  Identities=25%  Similarity=0.591  Sum_probs=49.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc----CCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL----NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~----~g~~G~~P~~~l~~~~~~  507 (514)
                      .+.|+|+|.+. ..+|.|+.|+++.|+.+.+++   ||+++.    +|+.|+||.+||+.+...
T Consensus        12 ~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~~g---Ww~g~~~~~~~g~~G~~P~~yv~~~~~~   71 (75)
T 2egc_A           12 VYVSIADYEGD-EETAGFQEGVSMEVLERNPNG---WWYCQILDGVKPFKGWVPSNYLEKKNSG   71 (75)
T ss_dssp             EEEECSCBCCC-SSSCCBCTTCEEEECEECTTS---EEEEEECCSSSCEEEEEEGGGEEECCSC
T ss_pred             EEEECCCcCCC-CCcCCCCCCCEEEEEEcCCCC---eEEEEeCCCCCCcEEEEehHHCEECCCC
Confidence            36789999998 999999999999999987655   999998    468999999999988753

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=98.39  E-value=9.5e-08  Score=79.52  Aligned_cols=63  Identities=24%  Similarity=0.508  Sum_probs=53.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCc-ccccceeeccCCC-CCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNK-EGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~-~e~~ww~~r~~g~-~G~~P~~~l~~~~~~~~~  510 (514)
                      .+.|||+|.+....+|.|++|+++.|+.+.++ ....||++++.++ .|+||.+||+.+......
T Consensus        19 ~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~~~~   83 (93)
T 1wxu_A           19 VARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKRRGR   83 (93)
T ss_dssp             CEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCBCCS
T ss_pred             EEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCcccc
Confidence            46889999999999999999999999988662 1245999999988 999999999988765443

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=98.39  E-value=4.9e-08  Score=77.60  Aligned_cols=53  Identities=42%  Similarity=0.779  Sum_probs=47.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..|+.|+||.+||+.
T Consensus        19 ~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~g---Ww~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           19 KVRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEEEEETT---EEEEECSSCEEECTTCCEEE
T ss_pred             EEEECCccCCCCCCccCCCCCCEEEEEEecCCC---EEEEEECCCEEEechhhCcc
Confidence            467899999999999999999999999875544   99999999999999999863

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=98.39  E-value=8.3e-08  Score=75.29  Aligned_cols=56  Identities=29%  Similarity=0.436  Sum_probs=50.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~~~  506 (514)
                      -+.++|+|.+....+|.|+.|+++.|+.+.+++   ||+++  ..|+.|+||.+||+.+..
T Consensus         9 ~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2cuc_A            9 MFVALHTYSAHRPEELDLQKGEGIRVLGKYQDG---WLKGLSLLTGRTGIFPSDYVIPVSG   66 (70)
T ss_dssp             CEECCSCBCCCSTTBCCBCTTCEEEEEEEEETT---EEEEEETTTCCEEEEEGGGCEECCC
T ss_pred             EEEECeeECcCCCCcCCCCCCCEEEEEEecCCC---eEEEEECCCCCEEEEchHHeEECcC
Confidence            467899999999999999999999999886544   99999  899999999999998765

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=98.39  E-value=6.6e-08  Score=73.62  Aligned_cols=54  Identities=28%  Similarity=0.645  Sum_probs=47.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~  506 (514)
                      ..++|+|.+....+|.|+.|+++.|+.+ ++   .||.++ ..|+.|+||.+|++.+..
T Consensus         4 ~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~---~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            4 AKSKYDFVARNSSELSVMKDDVLEILDD-RR---QWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEECGG-GC---CEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEECccCCCCCCCcccCCCCCEEEEEEc-CC---CeEEEEECCCCEEEEEHHHeEEccC
Confidence            5689999999999999999999999988 44   499997 689999999999988754

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=98.39  E-value=7.6e-08  Score=73.96  Aligned_cols=54  Identities=30%  Similarity=0.712  Sum_probs=48.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++.  .|+.|+||.+|++.+
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            8 TYRAMYDYSAQDEDEVSFRDGDYIVNVQPIDDG---WMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEEECSSS---EEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECeeeCCcCCCcCCCCCCCEEEEEEeCCCC---eEEEEECCCCCEEEEeHHHeEEC
Confidence            367899999999999999999999999887554   999998  899999999999865

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=98.39  E-value=5.3e-08  Score=75.15  Aligned_cols=53  Identities=28%  Similarity=0.752  Sum_probs=47.5

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC--------CCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--------NKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--------g~~G~~P~~~l~~~  504 (514)
                      +.|+|+|.+....+|.|+.|+++.|+.+.+++   ||.++..        |+.|+||.+||+.+
T Consensus         4 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            4 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEECCSSS---EEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             EEEcccCCccCCCCCCCCCCCEEEEEEcCCCC---EEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            56899999999999999999999999886554   9999987        89999999999865

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=98.39  E-value=6.7e-08  Score=75.44  Aligned_cols=56  Identities=36%  Similarity=0.730  Sum_probs=49.3

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~  505 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+.+++   ||+++ ..|+.|+||.+|++.+.
T Consensus        11 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A           11 EEYIAVGDFTAQQVGDLTFKKGEILLVIEKKPDG---WWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             EEEEECSCBCCSSSSCCCBCSSEEEEECSCCSSS---EEEEECSSSCEEEEESTTEEECC
T ss_pred             CEEEEcccCCCCCCCcCCCCCCCEEEEEEcCCCC---eEEEEECCCCEEEEehHHeEECc
Confidence            3457899999999999999999999999886554   99999 89999999999998763

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=8e-08  Score=79.47  Aligned_cols=56  Identities=29%  Similarity=0.596  Sum_probs=50.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC--CCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~~~l~~~~~  506 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++..  |+.|+||.+||+.+..
T Consensus        19 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~~g~~G~fP~~yv~~~~~   76 (90)
T 2yup_A           19 EAVAQYTFKGDLEVELSFRKGEHICLIRKVNEN---WYEGRITGTGRQGIFPASYVQVSRE   76 (90)
T ss_dssp             EEEECSCCCCCSSSBCCCCTTCEEEESSCCCSS---EEEEECTTTCCEEEEEGGGEEEEEC
T ss_pred             EEEEeecCCcCCcCcCCCCCCCEEEEEEEcCCC---eEEEEECCCCCEEEEehHHeEEcCC
Confidence            467899999999999999999999999876554   9999987  9999999999998764

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=98.38  E-value=7.2e-08  Score=75.11  Aligned_cols=55  Identities=27%  Similarity=0.617  Sum_probs=48.9

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCC--CCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g--~~G~~P~~~l~~~~  505 (514)
                      ...|+|+|.+....+|.|++|+++.|+.+.+++   ||.++..+  +.|+||.+|++.+.
T Consensus         8 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~~g~~G~~P~~yv~~~~   64 (67)
T 2o9s_A            8 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPITYVDVIK   64 (67)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEEECSSS---EEEEECTTSSCEEEEEGGGEEEEE
T ss_pred             EEEECccCCcCCcCccCCCCCCEEEEEEecCCC---EEEEEECCCCCEEEEChHHeEECC
Confidence            367899999999999999999999999876554   99999876  99999999998764

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=98.38  E-value=7e-08  Score=73.03  Aligned_cols=54  Identities=28%  Similarity=0.590  Sum_probs=47.5

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC--CCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~~~l~~~~  505 (514)
                      ..++|+|.+....+|.|++|+++.|+.+.+++   ||.++..  |+.|+||.+|++.++
T Consensus         4 ~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~~g---W~~g~~~~~g~~G~~P~~yv~~~~   59 (59)
T 1yn8_A            4 AVALYDFEPENDNELRLAEGDIVFISYKHGQG---WLVAENESGSKTGLVPEEFVSYIQ   59 (59)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEEEEETT---EEEEECTTSSCEEEEEGGGEEECC
T ss_pred             EEECccCCCCCCCCcCCCCCCEEEEEEcCCCC---eEEEEECCCCCEEEEehHHeEECC
Confidence            56899999999999999999999999876544   9999985  799999999998753

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=98.38  E-value=6.6e-08  Score=77.54  Aligned_cols=54  Identities=35%  Similarity=0.662  Sum_probs=48.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc-CCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~-~g~~G~~P~~~l~~~  504 (514)
                      -+.++|+|.+....+|.|+.|+++.|+.+.+++   ||.++. .|+.|+||.+||+..
T Consensus        22 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           22 LVIALYDYQTNDPQELALRCDEEYYLLDSSEIH---WWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             CCCCCCCBCCCCTTSCCBCSSSCCSCCCTTSSS---BCCCCCSSSCCCCCBSTTCCCC
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEecCCC---CEEEEECCCCEEEEehHHEEEc
Confidence            478899999999999999999999999886544   999994 899999999999763

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.38  E-value=1.1e-07  Score=75.14  Aligned_cols=57  Identities=23%  Similarity=0.479  Sum_probs=49.1

Q ss_pred             cchhhhhhhhc-ccccccccccCceEEEeec-CCcccccceeeccC--CCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEA-NNTDELSFKTGECIIVLRK-GDENEREWWWSKLN--NKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~-~~~~eL~~k~g~~i~vl~~-~~~~e~~ww~~r~~--g~~G~~P~~~l~~~~~  506 (514)
                      ..+.|+|+|.+ ....+|.|++|+++.|+.+ .++   .||.++..  |+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~---gWw~g~~~~~g~~G~fP~~yv~~~~~   68 (72)
T 1spk_A            8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD---GWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSCBT---TEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             eEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccCCC---CcEEEEECCCCCEEEEehHHeEECCC
Confidence            34678999995 8999999999999999976 333   49999988  9999999999998764

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.37  E-value=1.2e-07  Score=75.90  Aligned_cols=60  Identities=25%  Similarity=0.467  Sum_probs=51.3

Q ss_pred             chhhhhhhhcc-cccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~-~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ...++|+|.+. ...+|.|++|+++.|+.+..  +..||+++ .+|+.|+||.+||+.+.....
T Consensus        11 ~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~--~~gW~~g~~~~g~~G~~P~~yv~~~~~~~~   72 (77)
T 2enm_A           11 KARVMYDFAAEPGNNELTVTEGEIITVTNPNV--GGGWLEGKNNKGEQGLVPTDYVEILPNDGK   72 (77)
T ss_dssp             EEEESSCCCCCTTSSBCCCCTTCEEEEEESCC--SSSEEEEECTTCCEEEEETTTEEEECCCCC
T ss_pred             EEEECccCCCCCCCCeecCCCCCEEEEeEccC--CCCeEEEEECCCCEEEeehHHeEECCCCCC
Confidence            46789999998 99999999999999998752  23499999 899999999999998865543

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.37  E-value=4.7e-08  Score=77.17  Aligned_cols=56  Identities=27%  Similarity=0.558  Sum_probs=50.0

Q ss_pred             cchhhhhhhhc-ccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~-~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~~  505 (514)
                      ..+.|+|+|.+ ...++|.|++|+++.|+.+.+++   ||+++  ..|+.|+||.+||+.+.
T Consensus         8 ~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~---W~~g~~~~~g~~G~~P~~yv~~~~   66 (71)
T 2gqi_A            8 RRVRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVEDLVEEVS   66 (71)
T ss_dssp             CCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSSS---CEEEECTTTCCEEEECTTSEEECC
T ss_pred             CEEEECcccCCCCCCCCCCCCCCCEEEEEEecCCC---EEEEEECCCCCEEEeeHHHEEECC
Confidence            34688999999 99999999999999999886655   99999  78999999999999874

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=98.37  E-value=1.2e-07  Score=77.42  Aligned_cols=58  Identities=34%  Similarity=0.690  Sum_probs=51.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~~  508 (514)
                      -+.++|+|.+....+|.|+.|+++.|+.+.+++   ||.++.  .|+.|+||.+|++.+..+.
T Consensus         8 ~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~~~---Ww~g~~~~~g~~G~~P~~yv~~~~~~~   67 (84)
T 4ag1_C            8 LFVALYDYNATRWTDLSFHKGEKFQILEFGPGD---WWEARSLTTGETGYIPSNYVAPVDSIQ   67 (84)
T ss_dssp             EEEESSCBCCSBTTBCCBCTTCEEEEEECCSSS---EEEEEETTTCCEEEEEGGGEEETTTCC
T ss_pred             EEEEcccCCCCCCCcccccCCCEEEEEEecCCC---eEEEEECCCCCEEEEehHHeEECCCcc
Confidence            367899999999999999999999999887554   999998  8999999999999876653

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=98.37  E-value=8.2e-08  Score=72.46  Aligned_cols=52  Identities=21%  Similarity=0.433  Sum_probs=46.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhh
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLG  502 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~  502 (514)
                      ..++|+|.+....+|.|+.|+++.|+.+.+  +..||.++.  .|+.|+||.+||+
T Consensus         4 ~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~g~~~~~g~~G~~P~~yv~   57 (58)
T 1zuu_A            4 NKVLYAYVQKDDDEITITPGDKISLVARDT--GSGWTKINNDTTGETGLVPTTYIR   57 (58)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCS--SSSEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEEeeeECCcCCCcccCCCCCEEEEeEcCC--CCCCEEEEECCCCCEEEEEHHHEE
Confidence            468999999999999999999999998865  134999998  8999999999985

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.36  E-value=7.7e-08  Score=75.36  Aligned_cols=55  Identities=35%  Similarity=0.617  Sum_probs=49.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCC-CCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~-G~~P~~~l~~~~  505 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.+++   ||+++..++. |+||.+||+.+.
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~~~~G~~P~~yv~~~~   64 (69)
T 2eqi_A            9 TVKALYDYKAKRSDELTFCRGALIHNVSKEPGG---WWKGDYGTRIQQYFPSNYVEDIS   64 (69)
T ss_dssp             EEEESSCBCCCSSSCCCBCTTCEEESCCCCSSS---CEEEEETTEEEEEECGGGEEECC
T ss_pred             EEEECeeECCCCcCccCCCCCCEEEEEEcCCCC---eEEEEECCCCEEEEchHHcEECc
Confidence            467899999999999999999999999876554   9999998877 999999998875

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=98.36  E-value=1.2e-07  Score=73.89  Aligned_cols=56  Identities=23%  Similarity=0.478  Sum_probs=48.2

Q ss_pred             cchhhhhhhhc-ccccccccccCceEEEeec-CCcccccceeeccC--CCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEA-NNTDELSFKTGECIIVLRK-GDENEREWWWSKLN--NKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~-~~~~eL~~k~g~~i~vl~~-~~~~e~~ww~~r~~--g~~G~~P~~~l~~~~  505 (514)
                      ..+.|+|+|.+ ....+|.|+.|+++.|+.+ .++   .||.++..  |+.|+||.+||+.+.
T Consensus         7 ~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~~~---~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            7 QKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKD---GWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CEEEESSCBCCSSCSSBCCBCTTCEEEESSSSCBT---TEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             EEEEEeecCCCCCCCCCCcCCCCCEEEEeECCCCC---CcEEEEECCCCCEEEEehHHeEECC
Confidence            34678999995 8999999999999999975 433   49999987  999999999998764

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=1.3e-07  Score=79.46  Aligned_cols=58  Identities=26%  Similarity=0.449  Sum_probs=49.4

Q ss_pred             chhhhhhhhcc--------cccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEAN--------NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~--------~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      -+.|+|+|.+.        ...+|.|++|+++.|+.+.+  +.+||+++..|+.|+||.+||+.+..-
T Consensus        19 ~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~--~~gWw~g~~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           19 IFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKD--ADGFYRGETCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             EEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEEC--TTCEEEEEETTEEEEEETTTSEECCCC
T ss_pred             EEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecC--CCCeEEEEECCcEEEEehHHeEECCCC
Confidence            36889999998        78999999999999996532  234999999999999999999988653

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=98.36  E-value=1.3e-07  Score=72.51  Aligned_cols=57  Identities=30%  Similarity=0.492  Sum_probs=49.0

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .-+.++|+|.+....+|.|++|+++.|+.+..  ++.||.++..|+.|+||.+|++.+.
T Consensus         6 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            6 NLFVALYDFVASGDNTLSITKGEKLRVLGYNH--NGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TEEEESSCBCCCSSSBCCBCTTCEEEEEEECT--TSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             EEEEEcceECCCCCCccCCCCCCEEEEEEeCC--CCCeEEEEECCCeEEEehHHeEECC
Confidence            34688999999999999999999999998532  2359999999999999999998763

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=98.35  E-value=8.2e-08  Score=76.44  Aligned_cols=56  Identities=38%  Similarity=0.803  Sum_probs=49.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ...|+|+|.+....+|.|++|+++.|+.+.+  +..||.+++.|+.|+||.+||+.+.
T Consensus        11 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A           11 EAIAKYDFKATADDELSFKRGDILKVLNEEC--DQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEECCBCSS--CSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             EEEECccCCCCCCCeeeEcCCCEEEEeEecC--CCCEEEEEECCCEEEEehHhEEEcC
Confidence            3678999999999999999999999998763  2349999999999999999998764

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.35  E-value=1.1e-07  Score=74.55  Aligned_cols=57  Identities=26%  Similarity=0.511  Sum_probs=50.1

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC--CCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~~~l~~~~~  506 (514)
                      ..+.++|+|.+....+|.|+.|+++.|+.+.+++   ||+++..  |+.|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~g---W~~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct3_A            8 TPYRAMYQYRPQNEDELELREGDRVDVMQQCDDG---WFVGVSRRTQKFGTFPGNYVAPVSG   66 (70)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTEEEEEEEECSSS---CEEEEESSSCCEEEECTTTEEETTC
T ss_pred             cEEEECccCCcCCcCCccCCCCCEEEEEEECCCC---EEEEEECCCCCEEEechHHeEECCC
Confidence            3467899999999999999999999999887655   9999975  8999999999988754

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.35  E-value=1.6e-07  Score=76.20  Aligned_cols=59  Identities=17%  Similarity=0.373  Sum_probs=50.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.++  ..||.++.  .|+.|+||.+||++...++
T Consensus        19 ~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~--~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   79 (81)
T 1x6g_A           19 QCITKCEHTRPKPGELAFRKGDVVTILEACEN--KSWYRVKHHTSGQEGLLAAGALRERSGPS   79 (81)
T ss_dssp             EEEESSCBSSCCTTCCCBCTTCEEEEEECCCS--SSEEEEEETTTCCEEEEEGGGEEECCCSC
T ss_pred             EEEECCCCCcCCCCCCCCCCCCEEEEEeccCC--CCeEEEEeCCCCCEEEEehHHEEEccccc
Confidence            46789999999999999999999999987654  24999984  6999999999999876543

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.34  E-value=1.3e-07  Score=78.25  Aligned_cols=56  Identities=29%  Similarity=0.636  Sum_probs=47.5

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCc--ccccceeecc-CCCCCCchhhhhh
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRNLLG  502 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~--~e~~ww~~r~-~g~~G~~P~~~l~  502 (514)
                      .-+.|+|+|.+....+|.|+.|+++.|+.+.+.  .+.+||.|+. .|+.|+||.+||+
T Consensus        30 ~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~   88 (89)
T 2rf0_A           30 PVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVA   88 (89)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEE
T ss_pred             cEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCc
Confidence            346889999999999999999999999988410  1334999998 9999999999985

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=98.33  E-value=1.2e-07  Score=77.63  Aligned_cols=57  Identities=40%  Similarity=0.792  Sum_probs=50.4

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~  507 (514)
                      ..+.++|+|.+...++|.|++|+++.|+.+. +   .||+++.  .|+.|+||.+||+.+..+
T Consensus        26 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~---~Ww~g~~~~~g~~G~~P~~yv~~~~~~   84 (86)
T 2oi3_A           26 IIVVALYDYEAIHHEDLSFQKGDQMVVLEES-G---EWWKARSLATRKEGYIPSNYVARVDSL   84 (86)
T ss_dssp             EEEEESSCCCCSSSSCCCCCTTCEEEEEEES-S---SEEEEEETTTCCEEEEEGGGEEEGGGC
T ss_pred             cEEEECccCCCCCCCcCcCCCCCEEEEEEcC-C---CeEEEEECCCCCEEEEehHHcEEcccC
Confidence            3468899999999999999999999999886 3   4999998  899999999999887543

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.33  E-value=9.5e-08  Score=77.06  Aligned_cols=56  Identities=16%  Similarity=0.493  Sum_probs=49.8

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+ +++   ||+++.  .|+.|+||.+||+.+..
T Consensus        18 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~g---W~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           18 PQVEITKAFFAKQADEVTLQQADVVLVLQQ-EDG---WLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             CEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ETT---EEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CEEEECeeECCCCcCCcCCCCCCEEEEEEe-CCC---EEEEEECCCCCEEEEchHHEEECCC
Confidence            456889999999999999999999999988 444   999998  89999999999987753

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=98.32  E-value=1.3e-07  Score=81.21  Aligned_cols=58  Identities=24%  Similarity=0.473  Sum_probs=50.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCC---CCchhhhhhcCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLGLYPRVQP  509 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~---G~~P~~~l~~~~~~~~  509 (514)
                      ..++|+|.+...++|.|++|+++.|+.+.+++   ||.+++.|+.   |+||.+||+.+.....
T Consensus         8 ~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~---Ww~g~~~g~~g~~G~fPsnYV~~~~~~~~   68 (108)
T 2rqv_A            8 AIVLYDFKAEKADELTTYVGENLFICAHHNCE---WFIAKPIGRLGGPGLVPVGFVSIIDIATG   68 (108)
T ss_dssp             EEESSCCCCCSSSBCCCCSSEEECCCCEETTT---EEEECCSSSSCCCEEEESTTCBCCCSSSS
T ss_pred             EEECCCcCCCCCCcCCcCCCCEEEEeEecCCC---EEEEEECCccCCeeEeecceEEEecCCCC
Confidence            56899999999999999999999999876554   9999998777   9999999998765433

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=98.32  E-value=8.4e-08  Score=75.33  Aligned_cols=56  Identities=25%  Similarity=0.589  Sum_probs=49.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCC--CCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g--~~G~~P~~~l~~~~~  506 (514)
                      .+.++|+|.+....+|.|++|+++.|+.+.++   .||.++..+  +.|+||.+||+.+..
T Consensus         9 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~g~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ecz_A            9 EAIAKFNFNGDTQVEMSFRKGERITLLRQVDE---NWYEGRIPGTSRQGIFPITYVDVISG   66 (70)
T ss_dssp             CEEESSCCCCCSTTBCCCCTTCBCEEEEEEET---TEEEEEETTTTEEEEECTTTEEESSS
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEEEecCC---CeEEEEECCCCCEEEEchHHEEECCC
Confidence            46789999999999999999999999987554   499999876  999999999998764

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=98.31  E-value=1.5e-07  Score=73.27  Aligned_cols=56  Identities=23%  Similarity=0.439  Sum_probs=46.2

Q ss_pred             cchhhhhhhhcccccc-cccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcC
Q psy7683         447 GAVYALYDYEANNTDE-LSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  504 (514)
Q Consensus       447 ~g~taL~d~~~~~~~e-L~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~  504 (514)
                      ..+.|+|+|.+....+ |.|++|+++.|+.+..  +.+||.|+  +.|+.|+||.+||+.+
T Consensus         8 ~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~--~~gW~~g~~~~~g~~G~fP~~yv~~l   66 (67)
T 3rnj_A            8 MRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEA--RDGWHYGESEKTKMRGWFPFSYTRVL   66 (67)
T ss_dssp             CEEEESSCBCCCSCTTBCCBCTTCEEEECSSSC--BTTEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             eEEEEccccCCCCCCCCccCCCCCEEEEeeccC--CCCCEEEEECCCCCEEEEEHHHeEEC
Confidence            3468899999887666 9999999999985421  23599999  7899999999999875

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.30  E-value=1.7e-07  Score=76.64  Aligned_cols=56  Identities=36%  Similarity=0.675  Sum_probs=49.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~  506 (514)
                      -+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++ +.|+.|+||.+||+.+..
T Consensus        21 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~g~~G~~P~~yv~~~~~   77 (85)
T 2yuq_A           21 VVIALYDYQTNDPQELALRRNEEYCLLDSSEIH---WWRVQDRNGHEGYVPSSYLVEKSP   77 (85)
T ss_dssp             EEEESSCCCCSCSSBCCCCBTEEEEEEECCSSS---EEEEECSSSCEEEEETTTCEECCC
T ss_pred             EEEECcCCCCCCCCcCCCCCCCEEEEEEecCCC---eEEEEECCCCEEEEehHHeEEccC
Confidence            368899999999999999999999999887544   99996 689999999999998743

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.29  E-value=2.7e-07  Score=72.47  Aligned_cols=57  Identities=23%  Similarity=0.481  Sum_probs=49.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-CCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-g~~G~~P~~~l~~~~~  506 (514)
                      ...++|+|.+....+|.|++|+++.|+.+.+  +..||.++.. |+.|+||.+||+.+..
T Consensus         9 ~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~--~~gW~~~~~~~g~~G~~P~~yv~~~~~   66 (70)
T 2ct4_A            9 HCVAIYHFEGSSEGTISMAEGEDLSLMEEDK--GDGWTRVRRKEGGEGYVPTSYLRVTSG   66 (70)
T ss_dssp             EEEESSCBCCCSTTCCCBCTTCEEEEEECCS--SSCEEEEECSSSCEEEEEGGGEEECCC
T ss_pred             EEEEcccCCCCCCCcCCCCCCCEEEEEeccC--CCCeEEEEeCCCCEEEEEhHHeEEcCC
Confidence            4678999999999999999999999998753  2349999987 9999999999988754

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=98.29  E-value=3.2e-07  Score=71.74  Aligned_cols=56  Identities=41%  Similarity=0.761  Sum_probs=48.9

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~  506 (514)
                      .-+.++|+|.+....+|.|+.|+++.|+.+.    ..||.++ ..|+.|+||.+||+.+..
T Consensus         9 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~----~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            9 KWVLCNYDFQARNSSELSVKQRDVLEVLDDS----RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEECS----SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             EEEEECccCCCCCCCcccCCCCCEEEEEEcC----CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            3467899999999999999999999999874    3499997 579999999999998754

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=98.28  E-value=1.4e-07  Score=74.38  Aligned_cols=53  Identities=36%  Similarity=0.866  Sum_probs=47.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc---CCCC---CCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKE---GYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~---G~~P~~~l~~~  504 (514)
                      .+.|+|+|.+....+|.|++|+++.| .+.+++   ||+++.   +|+.   |+||.+||+.+
T Consensus        12 ~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~~~---Ww~g~~~~~~g~~~~~G~~P~~yv~~~   70 (72)
T 2kgt_A           12 KYVGLWDFKSRTDEELSFRAGDVFHV-ARKEEQ---WWWATLLDEAGGAVAQGYVPHNYLAER   70 (72)
T ss_dssp             EEECCTTCBCSSTTSCBCCTTCCEEE-EEECSS---CEEEEEECTTSCEEEEEEECTTTSEEE
T ss_pred             EEEEcccCCCCCcCCcCCCCCCEEEE-eeCCCC---EEEEEEcCCCCCEeCCcEEcHhHEEEc
Confidence            46889999999999999999999999 775554   999998   8999   99999999865

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=98.28  E-value=2.1e-07  Score=76.36  Aligned_cols=53  Identities=34%  Similarity=0.655  Sum_probs=46.9

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhc
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL  503 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~  503 (514)
                      .-+.|+|+|.+....+|.|+.|+++.|+.+ ++   +||.++ +.|+.|+||.+||++
T Consensus        32 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~~---~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           32 VIVIAKWDYTAQQDQELDIKKNERLWLLDD-SK---TWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             EEEEESSCCCCCSSSBCCCCTTEEEEEEEC-CS---SEEEEECTTSCEEEEEGGGBCC
T ss_pred             eEEEECccCCCCCCCEeccCCCCEEEEEec-CC---CeEEEEECCCCEEEeehHHEEe
Confidence            346889999999999999999999999987 33   499999 689999999999874

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.25  E-value=3.8e-07  Score=75.96  Aligned_cols=62  Identities=19%  Similarity=0.426  Sum_probs=51.9

Q ss_pred             ccchhhhhhhhcccccccccccCceEEEeecCC-cccccceeec--cCCCCCCchhhhhhcCCCC
Q psy7683         446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSK--LNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       446 ~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~-~~e~~ww~~r--~~g~~G~~P~~~l~~~~~~  507 (514)
                      ...+.|+|+|.+...++|.|++|+++.|+.+.. +.+.+||.++  +.|+.|+||.+||+.+..-
T Consensus        16 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   80 (94)
T 2e5k_A           16 HETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC   80 (94)
T ss_dssp             CEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCSC
T ss_pred             CeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcccC
Confidence            345788999999999999999999999998741 1124599999  8999999999999987643

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=98.23  E-value=3.4e-07  Score=72.54  Aligned_cols=55  Identities=29%  Similarity=0.555  Sum_probs=48.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc---CCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~G~~P~~~l~~~~~  506 (514)
                      -..++|+|.+....+|.|+.|+++.|+.+. +   +||.|+.   +|+.|+||.+|++.+..
T Consensus        13 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~---~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           13 YGVAFYNYDARGADELSLQIGDTVHILETY-E---GWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             CEEECSEECCCSSSBCCEETTEEEEEEEBS-S---SCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             EEEEceeeCCCCcCcccCCCCCEEEEEEcC-C---CeEEEEECCCCCCEEEEehHHEEEecc
Confidence            457899999999999999999999999874 3   3999987   79999999999987654

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=2.5e-07  Score=74.61  Aligned_cols=54  Identities=24%  Similarity=0.475  Sum_probs=47.3

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~  505 (514)
                      -+.|||+|.+....+|.|++|+++.|+.+    +..||+++.  .|+.|+||.+||+.+.
T Consensus        19 ~~~Alydy~a~~~~eLs~~~Gd~i~v~~~----~~~Ww~~~~~~~g~~G~~P~~yv~~~~   74 (79)
T 2cud_A           19 FLAVLSDYPSPDISPPIFRRGEKLRVISD----EGGWWKAISLSTGRESYIPGICVARVS   74 (79)
T ss_dssp             EEEESSCSSCTTTSCCSSCTTCEEEEEEE----ETTEEEEEETTTCCEEEEEGGGEEEEC
T ss_pred             EEEEccCCCCCCCCcCCCCCCCEEEEEec----CCCeEEEEECCCCCEEEeeHHHeEEcc
Confidence            47889999999999999999999999974    235999986  4899999999998764

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=98.20  E-value=3.5e-07  Score=71.85  Aligned_cols=54  Identities=33%  Similarity=0.682  Sum_probs=45.7

Q ss_pred             hhhhhhhhccccc--ccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTD--ELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~--eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~  506 (514)
                      ..|+|+|.+...+  +|.|++|+++.|+.+ +   ..||+++ ..|+.|+||.+||+.+..
T Consensus         8 ~~alydy~~~~~~~~eLsf~~Gd~i~v~~~-~---~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (70)
T 2vkn_A            8 AKALYPYDADDDDAYEISFEQNEILQVSDI-E---GRWWKARRANGETGIIPSNYVQLIDG   64 (70)
T ss_dssp             EEESSCBCCCSSSTTBCCBCTTCEEEEECT-T---SSEEEEECTTSCEEEEEGGGEEEEEE
T ss_pred             EEECccCCCCCCCCCcccCCCCCEEEEEEc-C---CCeEEEEECCCCEEEEehHHEEECCC
Confidence            5789999988655  999999999999875 3   3499996 699999999999987654

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=98.19  E-value=4.3e-07  Score=79.19  Aligned_cols=54  Identities=17%  Similarity=0.490  Sum_probs=48.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc---CCCCCCchhhhhhcCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYP  505 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~G~~P~~~l~~~~  505 (514)
                      -..|+|+|.+....+|.|+.|+++.|+.+. +   +||.|+.   .|+.|+||.+||+.+.
T Consensus        61 ~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~---gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           61 HGVAIYNFQGSGAPQLSLQIGDVVRIQETC-G---DWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-T---TEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             EEEEccccCCCCCCcccCcCCCEEEEEEcC-C---CEEEEEECCCCCCEEEeChhHEEEec
Confidence            467899999999999999999999999874 2   4999998   8999999999998764

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=98.18  E-value=3.7e-07  Score=82.12  Aligned_cols=56  Identities=30%  Similarity=0.598  Sum_probs=49.9

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecC-CcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKG-DENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~-~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      -+.|+|+|.+....+|.|+.|+++.|+.+. +++   ||+|+..|+.|+||.+||+.+..
T Consensus         7 ~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~~g---Ww~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            7 TAKARYDFCARDRSELSLKEGDIIKILNKKGQQG---WWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             EEEESSCCCCSSSSBCCCCTTCEEEEEECCCSSS---EEEEEETTEEEEEETTSEEESSC
T ss_pred             EEEECCccCCCCCCcCCCCCCCEEEEEEecCCCC---eEEEEECCeeEEechHHEEEccc
Confidence            367899999999999999999999999874 444   99999999999999999998754

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=98.18  E-value=4.7e-07  Score=74.67  Aligned_cols=55  Identities=40%  Similarity=0.789  Sum_probs=48.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~  507 (514)
                      +.|+|+|.+....+|.|+.|+++.|+.+. +   +||.++.  .|+.|+||.+|++.+...
T Consensus         6 ~~Alydy~~~~~~eLs~~~Gd~i~v~~~~-~---~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            6 VVALYDYVSWSPDDLSFQKGDQMVVLEES-G---EWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECS-S---SEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             EEECCccCcCCcCcCCCCCCCEEEEEEeC-C---CEEEEEECCCCCEEEEehhheEECCCC
Confidence            57899999999999999999999999873 3   4999997  899999999999987654

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=98.17  E-value=6.5e-07  Score=78.16  Aligned_cols=58  Identities=26%  Similarity=0.503  Sum_probs=50.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc---CCCCCCchhhhhhcCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ..++|+|.+...++|.|+.|+++.|+.+.+++   ||.++.   .|+.|+||.+||+.+....+
T Consensus         6 ~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~~~---Ww~g~~~~~~g~~G~~P~nyv~~~~~~~~   66 (120)
T 2kym_A            6 AVTLYEFKAERDDELDVSPGENLSICAHYDYE---WFIAKPINRLGGPGLVPVSYVRIIDLMDP   66 (120)
T ss_dssp             EEECSCBCCCSTTCCCBCTTCEEEEEEEETTT---EEEEEESSSCSCCCCEEGGGEEEECSSCT
T ss_pred             EEEcccCCCCCCCccCCCCCCEEEEEEecCCC---EEEEEECCCCCCEEEEchHHEEEccCCCC
Confidence            46899999999999999999999999886555   999984   68899999999998865544

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=98.16  E-value=6.2e-07  Score=76.58  Aligned_cols=58  Identities=36%  Similarity=0.731  Sum_probs=50.7

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~  507 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+.+++   ||+++.  .|+.|+||.+||+.+..+
T Consensus        28 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~~~g~~G~~P~~yv~~~~~~   87 (109)
T 2yt6_A           28 TIFVALYDYEARTTEDLSFKKGERFQIINNTEGD---WWEARSIATGKSGYIPSNYVVPADSI   87 (109)
T ss_dssp             CEEEESSCCCCSSTTSCCCCTTCEEEEEECSCTT---CEEEEESSSCCEEEECTTTEEESSSC
T ss_pred             EEEEECccCCCCCCCccCCCCCCEEEEEEccCCC---cEEEEECCCCCEEEechHHcEECCcc
Confidence            3468899999999999999999999999887554   999994  899999999999987544

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=98.16  E-value=7.2e-07  Score=69.89  Aligned_cols=53  Identities=19%  Similarity=0.420  Sum_probs=43.2

Q ss_pred             hhhhhhhcccccccccccCceEEEeec-CCcccccceee--ccCCCCCCchhhhhhcCC
Q psy7683         450 YALYDYEANNTDELSFKTGECIIVLRK-GDENEREWWWS--KLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       450 taL~d~~~~~~~eL~~k~g~~i~vl~~-~~~~e~~ww~~--r~~g~~G~~P~~~l~~~~  505 (514)
                      .+++++.+.+.++|.|++|+++.|+.+ .++   .||.|  ...|+.|+||.+||+.+.
T Consensus        14 ~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~---~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           14 YGIPPPPGAFGPFLRLNPGDIVELTKAEAEH---NWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             SSSSCCGGGCSCBCCBCTTCEEEEEECCTTC---SEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             EecCCCCCCCCCcCCcCCCCEEEEEeCCCCC---CCeEEEeCCCCCEeEeehHHeEECC
Confidence            445566666777999999999999988 344   49999  578999999999998764

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=98.13  E-value=7.2e-07  Score=71.56  Aligned_cols=54  Identities=20%  Similarity=0.447  Sum_probs=43.2

Q ss_pred             hhhhhhhhcc---cccccccccCceEEEeecC-Ccccccceeec--cCCCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEAN---NTDELSFKTGECIIVLRKG-DENEREWWWSK--LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~---~~~eL~~k~g~~i~vl~~~-~~~e~~ww~~r--~~g~~G~~P~~~l~~~~  505 (514)
                      +++++++...   ...+|.|++|+++.|+.+. +++   ||.|+  ..|+.|+||.+||+.+.
T Consensus        18 ~~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~~g---Ww~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           18 FQEYYGIPPPPGAFGGFLRLNPGDIVELTKAEAEHN---WWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             CSCBSSCSCCSSSSCCCCCBCTTCEEEEEECCSSCS---CEEEEETTTTEEEEECSTTEEESC
T ss_pred             EEECCCCCCCCCCCCCccCCCCCCEEEEEEcCCCCC---eEEEEECCCCCEEEEehHHeEECC
Confidence            3455555553   3589999999999999884 444   99999  68999999999998764

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=98.11  E-value=4e-07  Score=78.97  Aligned_cols=54  Identities=33%  Similarity=0.549  Sum_probs=46.8

Q ss_pred             chhhhhhhhcccccccccccCceEEEee-----cCCcccccceeecc----------CCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLR-----KGDENEREWWWSKL----------NNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~-----~~~~~e~~ww~~r~----------~g~~G~~P~~~l~~~  504 (514)
                      .+.|||+|.+....+|.|++|+++.|+.     +.++   +||.|+.          +|+.|+||.+||+.+
T Consensus        46 ~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~~~---gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l  114 (115)
T 1bb9_A           46 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDE---GWLMGVKESDWNQHKELEKCRGVFPENFTERV  114 (115)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCT---TEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEECCccCCCCCCccCcCCCCEEEEeeccCCcccCC---CeEEEEeCCCcccccccCCCEEEechHHEEEC
Confidence            4688999999999999999999999998     4444   4999965          488999999999875

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=98.09  E-value=1.5e-06  Score=66.81  Aligned_cols=47  Identities=21%  Similarity=0.615  Sum_probs=41.0

Q ss_pred             cccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         459 NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       459 ~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      +..+|.|+.|+++.|+.+.+++   ||.++..|+.|+||.+||+.+...+
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~   48 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLDSGT   48 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEECSCST
T ss_pred             CccccCCCCCCEEEEEEecCCC---EEEEEECCcEEEEeHHHEEEcCCCC
Confidence            4678999999999999887654   9999999999999999999886543

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.08  E-value=5.3e-07  Score=86.28  Aligned_cols=53  Identities=34%  Similarity=0.562  Sum_probs=46.7

Q ss_pred             hhhhhhhhcccccccccccCceEEEee-----cCCcccccceeecc----------CCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLR-----KGDENEREWWWSKL----------NNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~-----~~~~~e~~ww~~r~----------~g~~G~~P~~~l~~~  504 (514)
                      +.+||+|.+...++|.|+.|++|.|+.     +.++   +||+|+.          +|+.||||.+||+.+
T Consensus       145 ~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~dd---gWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l  212 (213)
T 1mv3_A          145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDE---GWLMGVKESDWNQHKKLEKCRGVFPENFTERV  212 (213)
T ss_dssp             EEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGSCT---TEEEEEEHHHHHTGGGGGGTCEEEESTTEEEE
T ss_pred             EEECCCcCCCCCCcCCcCCCCEEEEeecCCCCccCC---CeeEEEeCCcccccccCCCCEEEecHHHeEEC
Confidence            578999999999999999999999998     4444   4999995          599999999999865

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=98.08  E-value=1.4e-06  Score=69.81  Aligned_cols=48  Identities=23%  Similarity=0.603  Sum_probs=42.1

Q ss_pred             cccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         457 ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       457 ~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      +....+|.|++|+++.|+.+.+++   ||.+++.|+.|+||.+||+.+...
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCCSS---CCCEEETTEEECCCGGGEEECCCS
T ss_pred             CcCCCccCCCCCCEEEEEEecCCC---EEEEEECCcEEEEEeeEEEEcCCC
Confidence            457889999999999999887554   999999999999999999988654

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=98.08  E-value=4.3e-07  Score=75.18  Aligned_cols=61  Identities=18%  Similarity=0.349  Sum_probs=48.9

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecC----------C--cccccceeecc--CCCCCCchhhhhhcCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKG----------D--ENEREWWWSKL--NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~----------~--~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~  507 (514)
                      ..+.|+|+|.+...++|.|+.|+++.|+.+.          +  ..+.+||.|+.  .|+.|+||.+||+.+.+.
T Consensus        12 ~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~~~gW~~G~~~~~g~~G~fP~nyVe~i~~~   86 (90)
T 3o5z_A           12 FQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDFPGTYVEFLGPV   86 (90)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHHHHCEEEEEETTTCCEEEEEGGGEEEEEEE
T ss_pred             cEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCCCCCceEEEeCCCCCEEEeehHHEEEeccc
Confidence            3468899999999999999999999998431          1  11225999975  699999999999987654

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=98.05  E-value=1.1e-06  Score=85.16  Aligned_cols=62  Identities=29%  Similarity=0.627  Sum_probs=54.3

Q ss_pred             ccchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCCC
Q psy7683         446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       446 ~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      ...+.|+|+|.+...++|.|++|+++.|+.+.+++   ||.++ ..|+.|+||.+||+.+....+.
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~~~~~~~  198 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYRPASAS  198 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSCSS---EEEEECTTSCEEEEEGGGSCCCCSSCCC
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccCCC---cEEEEeCCCCEEEEehHHeEEcCCCCcC
Confidence            34578999999999999999999999999887655   99999 8999999999999998766543

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=98.02  E-value=1.4e-06  Score=82.11  Aligned_cols=57  Identities=28%  Similarity=0.478  Sum_probs=51.1

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.++|+|.+...++|.|+.|+++.|+.+.+++   ||++++.|+.||||.+||+.+..
T Consensus        82 ~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~~g---Ww~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           82 EPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCTTS---EEEEEETTEEEEEEGGGEEETTS
T ss_pred             eeeeeccccCCCCCCcccccCCCEEEEEEecCCC---eEEEEECCCEEEEehHHeEECCC
Confidence            3457899999999999999999999999886555   99999999999999999988764

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=98.00  E-value=3.7e-06  Score=79.22  Aligned_cols=58  Identities=26%  Similarity=0.649  Sum_probs=51.9

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~  507 (514)
                      ..+.++|+|.+....+|.|+.|+++.|+.+.+++   ||.++..|+.||||.+|++.+...
T Consensus        12 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~g---Ww~g~~~g~~G~~P~~yv~~~~~~   69 (193)
T 1ng2_A           12 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSESG---WWFCQMKAKRGWIPASFLEPLDSP   69 (193)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCTTS---CCEEEECCCCCCCCGGGCCCSSCS
T ss_pred             cEEEEcCCcCCCCCCcCCCCCCCEEEEEEecCCC---eEEEEECCeeeEechheEEeeccc
Confidence            3468899999999999999999999999986655   999999999999999999987654

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=97.99  E-value=1.7e-06  Score=80.00  Aligned_cols=53  Identities=25%  Similarity=0.634  Sum_probs=48.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhc
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL  503 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~  503 (514)
                      -+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.|+ ..|+.|+||.+||+.
T Consensus       120 ~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          120 VVVGTFKFTGERETDLPFEQGERLEILSKTNQD---WWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSS---EEEEECTTCCEEEEEGGGEEE
T ss_pred             EEEEecCcccCCCCccccccCCEEEEEEccCCC---eEEEEECCCCEEEEChHHEEe
Confidence            467899999999999999999999999887655   99999 699999999999864

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=97.98  E-value=5e-07  Score=73.40  Aligned_cols=59  Identities=20%  Similarity=0.411  Sum_probs=47.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecC------------Ccccccceeec--cCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKG------------DENEREWWWSK--LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~------------~~~e~~ww~~r--~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.++|+|.+....+|.|+.|+++.|+.+.            .+.+.+||.|+  ..|+.|+||.+||+.+..
T Consensus         7 ~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            7 QYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             EEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            357899999999999999999999999541            11123599994  569999999999988754

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=97.97  E-value=1.9e-06  Score=69.60  Aligned_cols=53  Identities=26%  Similarity=0.507  Sum_probs=45.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc----CCCCCCchhhhh
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL----NNKEGYVPRNLL  501 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~----~g~~G~~P~~~l  501 (514)
                      .+.++|+|.+....+|.|++|+++.|+++.. ++.+||+.|.    .+++||+|.+||
T Consensus        19 ~~valydF~Ar~~~ELS~~kGd~vevle~~~-~~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           19 LTVVLQDFSAAHSSELSIQVGQTVELLERPS-ERPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEECSSCBCCCSTTCCCBCTTCEEEESSCTT-SSTTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             EEEEEeeecCCCCCeeeEcCCCEEEEEecCC-CCCCEEEEEECCCCCCcEeeccccEE
Confidence            3688999999999999999999999998753 3567999995    237899999998

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=97.96  E-value=2.1e-06  Score=81.94  Aligned_cols=56  Identities=32%  Similarity=0.671  Sum_probs=50.8

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ..+.|+|+|.+...++|.|+.|+++.|+.+.+++   ||.|+..|+.|+||.+||+.+.
T Consensus       159 ~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~~~  214 (217)
T 1gri_A          159 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYVTPVN  214 (217)
T ss_dssp             CEEEESSCCCCSSTTBCCCCTTCEEEEEECCSSS---EEEEECSSCEEEEEGGGEEEEC
T ss_pred             eEEEecCCccCCCCCcCCCCCCCEEEEEEeCCCC---eEEEEECCeEEEEeHHHeEECC
Confidence            4468899999999999999999999999987655   9999999999999999998775

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=97.89  E-value=2.9e-06  Score=85.58  Aligned_cols=59  Identities=20%  Similarity=0.304  Sum_probs=52.5

Q ss_pred             hhhhhhhh--cccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         449 VYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       449 ~taL~d~~--~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      ..++|+|.  +...++|.|+.|+++.|+.+.+++   ||+|+++|+.|+||.+||+.+....+.
T Consensus       240 ~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~g---Ww~g~~~g~~G~fP~~yv~~~~~~~~~  300 (304)
T 2eyz_A          240 ARVIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFTHVRLLDQQNPE  300 (304)
T ss_dssp             SCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTTS---CEEEEETTEEEECCCTTSCCCSSCCTT
T ss_pred             EEEeeeecCCCCCCCeecccCCCEEEEEEecCCC---eEEEEECCceEEechHHEEECCCCCcc
Confidence            57899999  779999999999999999887665   999999999999999999998766553

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=97.88  E-value=2.7e-06  Score=84.21  Aligned_cols=56  Identities=39%  Similarity=0.763  Sum_probs=50.3

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.|+|+|.+.+.++|.|+.|+++.|+.+.+++   ||.|+..|+.|+||.+|++.+..
T Consensus         4 ~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~~~---w~~~~~~g~~G~~P~~~v~~~~~   59 (283)
T 3jv3_A            4 QVIGMYDYTAQNDDELAFSKGQIINVLNKEDPD---WWKGEVSGQVGLFPSNYVKLTTD   59 (283)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSTT---EEEEEETTEEEEEEGGGEEEGGG
T ss_pred             EEEEccccCCCCCCcCCCCCCCEEEEEecCCCC---EEEEEECCCCCcCCCccccccCc
Confidence            357899999999999999999999999887654   99999999999999999987654

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=97.83  E-value=6.4e-06  Score=76.22  Aligned_cols=58  Identities=29%  Similarity=0.650  Sum_probs=50.3

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~~  508 (514)
                      .-+.|+|+|.+....+|.|++|+++.|+.+ +   ..||.++.  .|+.|+||.+|++.+..+.
T Consensus        13 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~---~~Ww~~~~~~~g~~G~vP~~yv~~~~~l~   72 (175)
T 4d8k_A           13 NLVIALHSYEPSHDGDLGFEKGEQLRILEQ-S---GEWWKAQSLTTGQEGFIPFNFVAKANSLE   72 (175)
T ss_dssp             CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-C---SSEEEEEETTTCCEEEEEGGGEEETTCST
T ss_pred             cEEEEccCcCCcCCcccccccCCEEEEEcc-C---CCEEEEEECCCCceeeecccccccccccc
Confidence            347889999999999999999999999987 3   35999997  8999999999999765443

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.74  E-value=7.1e-06  Score=84.09  Aligned_cols=60  Identities=23%  Similarity=0.494  Sum_probs=53.3

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ..+.|+|+|.+....+|.|+.|+++.|+.+.+++   ||.|++.|+.|+||.+||+.+.....
T Consensus       175 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~~~~  234 (341)
T 2dyb_A          175 PRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLSFVKILKDFPE  234 (341)
T ss_dssp             CEEEESSCBCCSSSSBCCBCTTCEEEEEEECSSS---EEEEEETTEEEEEEGGGEEEEECCCC
T ss_pred             cEEEEEEeeCCCCCCcCCccCCCEEEEEEecCCC---EEEEEECCcEEEechHHeEEcCCCCc
Confidence            4578999999999999999999999999986655   99999999999999999998866543

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=96.89  E-value=5e-06  Score=83.86  Aligned_cols=60  Identities=18%  Similarity=0.350  Sum_probs=51.6

Q ss_pred             chhhhhhhh--cccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~--~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      -..+||+|.  +.+..+|.|+.|+++.|+.+.+++   ||.|+++|+.|+||.+||+.+....|.
T Consensus       239 ~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~~g---Ww~g~~~g~~G~fP~~yv~~~~~~~~~  300 (303)
T 2lqn_A          239 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFTHVKIFDPQNPD  300 (303)
Confidence            468899996  445779999999999999886555   999999999999999999998776654

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=97.64  E-value=1.3e-05  Score=85.33  Aligned_cols=56  Identities=30%  Similarity=0.726  Sum_probs=50.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.|+|+|.+...++|.|+.|+++.|+.+.+++   ||+|+..|+.|+||.+||+.+..
T Consensus        32 ~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           32 CAEALWDHVTMDDQELGFKAGDVIEVMDATNRE---WWWGRVADGEGWFPASFVRLRVN   87 (466)
T ss_dssp             EEEESSCBCCCCTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEECSC
T ss_pred             EEEEccccCCCCCCcCCCCCCCEEEEEEecCCC---EEEEEECCcEEEEehhHeeeccC
Confidence            357899999999999999999999999887555   99999999999999999987654

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=97.63  E-value=1.9e-05  Score=79.63  Aligned_cols=59  Identities=29%  Similarity=0.647  Sum_probs=52.2

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~  508 (514)
                      .-+.++|+|.+....+|.|++|+++.|+.+.+++   ||.++ ..|+.|+||.+||+.+....
T Consensus       135 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~~~~~  194 (304)
T 2eyz_A          135 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYRPAS  194 (304)
T ss_dssp             CEEEECSCCCCSCSSSCCCCTTCEEEEEECCSSS---EEEEECTTSCEEEEESTTEEECCCST
T ss_pred             eeEEEEeeecCCCCCcCcccCCCEEEEEEecCCC---cEEEEeCCCceeccchhccccccCCC
Confidence            3467899999999999999999999999986554   99999 79999999999999887653

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=97.63  E-value=1.5e-05  Score=80.48  Aligned_cols=58  Identities=22%  Similarity=0.556  Sum_probs=49.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc-CCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~-~g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++. .|+.|+||.+||+....+.
T Consensus       149 ~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~g~~G~~P~~yv~~~~~~~  207 (308)
T 3qwy_A          149 VVVGTFKFTGERETDLPFEQGERLEILSKTNQD---WWEARNALGTTGLVPANYVQIQMEFH  207 (308)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECCSSS---EEEEECTTSCEEEEEGGGEEEC----
T ss_pred             eEEEeceEcCCCCCcCcCCCCCEEEEEEcCCCC---eEEEEeCCCCeeEecccccccccccc
Confidence            478899999999999999999999999887655   999995 9999999999999554443

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=97.60  E-value=8.9e-06  Score=76.15  Aligned_cols=54  Identities=17%  Similarity=0.488  Sum_probs=47.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc---CCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~G~~P~~~l~~~~~  506 (514)
                      ..|+|+|.+....+|.|++|+++.|+.+.+    +||.|++   .|+.|+||.+||+.+..
T Consensus        20 ~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~----~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           20 GVAIYNFQGSGAPQLSLQIGDVVRIQETCG----DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEEEET----TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             EEEeeeeCCCCCCCCCcCCCCEEEEEecCC----CEEEEEEecCCCceEEECcceEEEecc
Confidence            568999999999999999999999998743    2999998   78999999999987653

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=97.57  E-value=2.1e-05  Score=85.06  Aligned_cols=57  Identities=32%  Similarity=0.745  Sum_probs=50.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~  507 (514)
                      .+.|+|+|.+....+|.|++|+++.|+.+.+++   ||.++.  .|+.|+||.+||+....+
T Consensus        87 ~~~alyd~~~~~~~el~~~~gd~i~v~~~~~~~---ww~~~~~~~g~~G~~P~~yv~~~~~l  145 (535)
T 2h8h_A           87 TFVALYDYESRTETDLSFKKGERLQIVNNTEGD---WWLAHSLSTGQTGYIPSNYVAPSDSI  145 (535)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEECSSSS---EEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             EEEEccccCCcCCCcCCcCCCCEEEEEEecCCC---ceEEEECCCCcceEecchhhcccccc
Confidence            368899999999999999999999999887554   999998  899999999999886543

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=97.54  E-value=1.9e-05  Score=75.28  Aligned_cols=55  Identities=38%  Similarity=0.817  Sum_probs=44.5

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ..|+|+|.+....+|.|++|+++.|+.+.+  +..||.++..|+.|+||.+|++...
T Consensus         3 ~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~~~~~g~~G~~P~~yv~~~~   57 (217)
T 1gri_A            3 AIAKYDFKATADDELSFKRGDILKVLNEEC--DQNWYKAELNGKDGFIPKNYIEMKP   57 (217)
T ss_dssp             EEECSCBCCCSSSCCCBCTTCEEEC--------CCEEEEESSSCEEEEEGGGEECCC
T ss_pred             EEEeeccCCcCCCcCCCCCCCEEEEEeccC--CCCeEeeccCCccceECCccccccc
Confidence            467999999999999999999999997753  2349999999999999999998654

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=97.54  E-value=2.1e-05  Score=83.10  Aligned_cols=56  Identities=32%  Similarity=0.755  Sum_probs=49.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~  507 (514)
                      +.|+|+|.+...++|.|++|+++.|+.+.+++   ||.++.  .|+.|+||.+|++....+
T Consensus         5 ~~al~~~~~~~~~el~~~~gd~~~v~~~~~~~---ww~~~~~~~g~~G~~P~~yv~~~~~l   62 (452)
T 1fmk_A            5 FVALYDYESRTETDLSFKKGERLQIVNNTEGD---WWLAHSLSTGQTGYIPSNYVAPSDSI   62 (452)
T ss_dssp             EEESSCBCCCSSSBCCBCTTCEEEESCCCSSS---EEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             EEECCccCCCCCCCCCccCCCEEEEeccCCCC---ceEEEEcCCCcccccCcccccccccc
Confidence            57899999999999999999999999886554   999998  899999999999886544

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=97.51  E-value=1.4e-05  Score=80.68  Aligned_cols=55  Identities=22%  Similarity=0.378  Sum_probs=0.0

Q ss_pred             hhhhhhh--hcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDY--EANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~--~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..++|+|  .+.+.++|.|+.|+++.|+.+.+++   ||.|+++|+.|+||.+||+.+..
T Consensus       250 a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~~---ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          250 AKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSNG---MYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             ------------------------------------------------------------
T ss_pred             cccccccccccCCcccceeCCCCEEEEEEEcCCC---cEEEEECCeeEEechHHeEEecC
Confidence            4678999  4556699999999999999886655   99999999999999999998753

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=96.64  E-value=1.4e-05  Score=80.50  Aligned_cols=59  Identities=29%  Similarity=0.694  Sum_probs=52.1

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ..+.++|+|.+....+|.|++|+++.|+.+.+++   ||+++ ..|+.|+||.+||+.+....
T Consensus       126 ~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---Ww~~~~~~g~~G~~P~~yv~~~~~~~  185 (303)
T 2lqn_A          126 EYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEEQ---WWSARNKDGRVGMIPVPYVEKLVRSS  185 (303)
Confidence            3478899999999999999999999999886554   99999 58999999999999887654

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=97.49  E-value=2.7e-05  Score=65.12  Aligned_cols=53  Identities=25%  Similarity=0.276  Sum_probs=43.1

Q ss_pred             hhhhhh--hcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCC
Q psy7683         450 YALYDY--EANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       450 taL~d~--~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~  505 (514)
                      .+++++  ......+|.|+.|+++.|+...++   +||++| -+|+.||+|++||..+.
T Consensus        43 ~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~---~wwLcRNs~GkyGyVP~~yl~~~d   98 (102)
T 1ri9_A           43 KVTTSITSKKWGTRDLQVKPGESLEVIQTTDD---TKVLCRNEEGKYGYVLRSYLADND   98 (102)
T ss_dssp             BCCTTSCSSCCCTTBCCCCTTCBCEEEEESSS---SEEEEEETTTEEEEEEGGGSCC--
T ss_pred             EEeeccccccCCcccCCcCCCCEEEEEEeCCC---CEEEEECCCCCCCceeHHHhcccc
Confidence            445555  566789999999999999999875   599999 58999999999998653

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=97.46  E-value=4.1e-05  Score=80.73  Aligned_cols=58  Identities=21%  Similarity=0.497  Sum_probs=50.1

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-CCCCCchhhhhhcCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-g~~G~~P~~~l~~~~~~  507 (514)
                      -+.|+|+|.+...++|.|++|+++.|+.+.+  +..||+++.. |+.|+||.+||++...+
T Consensus        13 ~~~aly~~~~~~~~el~~~~gd~i~v~~~~~--~~~ww~~~~~~g~~G~~P~~yv~~~~~~   71 (450)
T 1k9a_A           13 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTK--DPNWYKAKNKVGREGIIPANYVQKREGV   71 (450)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEEECS--STTEEEEECTTCCEEEEEGGGEEECCCC
T ss_pred             EEEECCCcCccCCCcCCCCCCCEEEEeeccC--CCCceEEEECCCceeeechhcccccccc
Confidence            4678999999999999999999999998732  2349999987 99999999999987654

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=97.45  E-value=0.00012  Score=59.99  Aligned_cols=54  Identities=20%  Similarity=0.409  Sum_probs=43.4

Q ss_pred             hhcccccccccccCceEEEeecCCc--ccccceeeccCCCCCCchhhhhhcCCCCCC
Q psy7683         455 YEANNTDELSFKTGECIIVLRKGDE--NEREWWWSKLNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       455 ~~~~~~~eL~~k~g~~i~vl~~~~~--~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      +.+....++.+++|+++.|+.+.|.  +..+|| .+..|+.||||..||+-+.+.+.
T Consensus        26 ~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~-Vdtgg~~GyvPs~yLe~~~~~~~   81 (92)
T 1ug1_A           26 FNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWL-IDNGVTKGFVYSSFLKPYNPRRS   81 (92)
T ss_dssp             CCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEE-EECSSSEEEEEGGGEEECCCCSS
T ss_pred             cCCCCceeeeecCCCEEEEEecCCCCCCCcceE-EECCCcEEeeEhhhceEcccCCC
Confidence            4455788999999999999999873  444555 55589999999999999887654

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=97.38  E-value=2.5e-05  Score=83.73  Aligned_cols=54  Identities=39%  Similarity=0.692  Sum_probs=0.0

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-CCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-g~~G~~P~~~l~~~  504 (514)
                      +.|+|+|.+....+|.|+.|+++.|+.+.++  .+||.|++. |+.|+||.+||+.+
T Consensus       431 ~~alydy~~~~~~eLsf~~Gd~i~vl~~~~~--~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          431 VRALYDYEGQEHDELSFKAGDELTKMEDEDE--QGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ---------------------------------------------------------
T ss_pred             EEEccccCCCCCCcCccCCCCEEEEEEecCC--CCeeEEEeCCCCEEEEeHHHceeC
Confidence            6899999999999999999999999987532  359999998 99999999999875

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=97.36  E-value=4.6e-05  Score=82.36  Aligned_cols=59  Identities=15%  Similarity=0.150  Sum_probs=52.0

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ..+.|+|+|.+++.+||.|+.||++.|+.+.+++   ||.|+  +.|+.|+||.+||+.+....
T Consensus       443 ~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~~g---W~~G~~~~~g~~G~fPsnyV~~~~~~~  503 (526)
T 2de0_X          443 HNQIAIYAHQPRTADEIPMEPGDIIGVAGNHWDG---YSKGVNRKLGRTGLYPSYKVREKIETV  503 (526)
T ss_dssp             CEEEECSCBCCSSTTBCCBCTTCEEEEEEECSSS---EEEEEETTTTEEEEEEGGGEEECCCEE
T ss_pred             cceEEeecCCCCCCCcCCcCCCCEEEEccccCCC---eeEEEeCCCCCEEEECchheeEcccCC
Confidence            3467899999999999999999999999887665   99999  78999999999998876653

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=97.31  E-value=9.8e-05  Score=61.21  Aligned_cols=53  Identities=28%  Similarity=0.472  Sum_probs=43.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhc
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~  503 (514)
                      ..++++ ......+|.|+.|+++.|+...++ ..+||++| ..|+.||+|.++|+.
T Consensus        31 a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~-p~g~Wl~RN~~G~~GyVp~~~v~v   84 (96)
T 2gtj_A           31 AKACCD-VKGGKNELSFKQGEQIEIIRITDN-PEGKWLGRTARGSYGYIKTTAVEI   84 (96)
T ss_dssp             EEESSC-EECTTSCCEECTTCCEEEEECTTC-SSSCCEEECTTCCBCCCCGGGEEE
T ss_pred             EEEeec-CCCCcccCCcCCCCEEEEEEccCC-CCCeEEEECCCCCCCccchhhEEE
Confidence            455666 566889999999999999998763 45699999 589999999999764

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=97.27  E-value=7.2e-05  Score=79.98  Aligned_cols=57  Identities=32%  Similarity=0.512  Sum_probs=49.8

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      -+.|+|+|.+....+|.|++|+++.|+.+.+  ++.||.++..|+.|+||.+||+.+..
T Consensus        45 ~~~alyd~~~~~~~els~~~gd~~~v~~~~~--~~~w~~~~~~~~~G~~P~~yv~~~~~  101 (495)
T 1opk_A           45 LFVALYDFVASGDNTLSITKGEKLRVLGYNH--NGEWCEAQTKNGQGWVPSNYITPVNS  101 (495)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECT--TSSEEEEECSSCEEEEEGGGEEESSS
T ss_pred             EEEEeCCcCCCCCCCCCccCCCEEEEeecCC--CCCceeeeecCCcceecccccccccc
Confidence            3779999999999999999999999998763  23599999999999999999987643

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=97.27  E-value=6e-05  Score=75.66  Aligned_cols=53  Identities=30%  Similarity=0.663  Sum_probs=45.0

Q ss_pred             hhhhhhhhccccc-----ccccccCceEEEeecCCcccccceeeccCC------CCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTD-----ELSFKTGECIIVLRKGDENEREWWWSKLNN------KEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~-----eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g------~~G~~P~~~l~~~  504 (514)
                      +.|+|+|.+....     +|.|++|+++.|+.+.+++   ||.++..+      +.|+||.+|+.+.
T Consensus         4 vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d~~---WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEE---WWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSS---EEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCCCC---eEEEEECCCCCccCceeEeecHHHHHH
Confidence            4678999988877     9999999999999987655   99999764      7899999998653

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=97.26  E-value=8e-05  Score=78.53  Aligned_cols=55  Identities=42%  Similarity=0.842  Sum_probs=48.5

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~~~~  506 (514)
                      -+.|+|+|.+...++|.|++|+++.|+.+.    .+||.++  ..|+.|+||.+||..+..
T Consensus        10 ~~~al~~~~~~~~~el~~~~gd~~~v~~~~----~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A           10 IVVALYDYEAIHHEDLSFQKGDQMVVLEES----GEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECC----TTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEEECcccCCcCCCcCcccCCCEEEEEecC----CCCeEEEECCCCceEEecchhcccccc
Confidence            367999999999999999999999999873    3499999  789999999999987643

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=97.05  E-value=0.00026  Score=53.84  Aligned_cols=40  Identities=33%  Similarity=0.797  Sum_probs=35.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN  490 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~  490 (514)
                      .+.|+|+|.+....+|.|+.|+++.|+.+.+++   ||.++++
T Consensus        23 ~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~n   62 (62)
T 1g2b_A           23 LVLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVN   62 (62)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEECCSSS---EEEEEEC
T ss_pred             EEEEeeeECCCCCCccCCCCCCEEEEEEecCCC---EEEEEeC
Confidence            468899999999999999999999999886554   9999863

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=96.72  E-value=0.00042  Score=76.85  Aligned_cols=64  Identities=25%  Similarity=0.335  Sum_probs=48.9

Q ss_pred             cccchhhhhhhh---cccccccccccCceEEEeecCCc--ccccceeec--cCCCCCCchhhhhhcCCCCC
Q psy7683         445 NNGAVYALYDYE---ANNTDELSFKTGECIIVLRKGDE--NEREWWWSK--LNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       445 d~~g~taL~d~~---~~~~~eL~~k~g~~i~vl~~~~~--~e~~ww~~r--~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ...-..|++++.   +.+..+|.|++||++.++.+.++  .+..||.|+  +.|+.|+||.+||..++.+.
T Consensus       572 rs~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~  642 (655)
T 3pvl_A          572 RSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVT  642 (655)
T ss_dssp             HCCEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSS
T ss_pred             cchhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCC
Confidence            344467789998   78889999999999999877210  133499999  78999999999999888764

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=96.54  E-value=0.0008  Score=68.38  Aligned_cols=51  Identities=27%  Similarity=0.579  Sum_probs=43.2

Q ss_pred             cchhhhhhhhcccccc-------cccccCceEEEeecCCcccccceeecc---CCCCCCchhhh
Q psy7683         447 GAVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNL  500 (514)
Q Consensus       447 ~g~taL~d~~~~~~~e-------L~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~G~~P~~~  500 (514)
                      --+.|+|+|.+....+       |.|++|+++.|+.+.+.+   ||.+|.   .|+.|+||...
T Consensus        39 ~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~---WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           39 FAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNND---WWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             EEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSS---EEEEEESSTTCCCEEEECHH
T ss_pred             EEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCC---eEEEEECCCCCCccEecCHH
Confidence            3467899999887664       999999999999987665   999998   46799999976

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=96.00  E-value=0.0015  Score=65.75  Aligned_cols=55  Identities=16%  Similarity=0.325  Sum_probs=41.7

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcc------cccceeeccCC------CCCCchhhhhhc
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDEN------EREWWWSKLNN------KEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~------e~~ww~~r~~g------~~G~~P~~~l~~  503 (514)
                      +.++|+|.+....+|.|++||++.|+...+.+      ..+||.++..|      +.|++|..+.++
T Consensus         7 VRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            7 IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            45899999999999999999999999877654      35699998743      579999987653

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=95.83  E-value=0.0022  Score=66.80  Aligned_cols=56  Identities=20%  Similarity=0.308  Sum_probs=45.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCC------CCCCchhhhhhc
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN------KEGYVPRNLLGL  503 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g------~~G~~P~~~l~~  503 (514)
                      -+.++|+|.+.+..+|.|+.|+++.|+.....++..||.++..+      +.|++|..++++
T Consensus       108 ~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          108 YIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             EEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            35689999999999999999999999988433345599998744      379999998764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=95.21  E-value=0.0071  Score=67.80  Aligned_cols=53  Identities=30%  Similarity=0.664  Sum_probs=44.2

Q ss_pred             hhhhhhhhcccccc-----cccccCceEEEeecCCcccccceeeccC------CCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDE-----LSFKTGECIIVLRKGDENEREWWWSKLN------NKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~e-----L~~k~g~~i~vl~~~~~~e~~ww~~r~~------g~~G~~P~~~l~~~  504 (514)
                      +.|+|+|.+....+     |.|++|+++.|+.+.+.+   ||.++..      ++.|+||.+|+.+-
T Consensus       430 vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~~---WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          430 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEE---WWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             EEEeeccCcCCCCCCccccccccCCCEEEEeecCCCC---eEEEEECCCCCccCccceeecHHHHHH
Confidence            45899999988887     999999999999887654   9999875      34699999998654

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=95.04  E-value=0.0063  Score=64.73  Aligned_cols=55  Identities=22%  Similarity=0.372  Sum_probs=44.5

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc---CC---CCCCchhhhhhc
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NN---KEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~---~g---~~G~~P~~~l~~  503 (514)
                      +.++|+|......+|.|++|+++.|+.....++..||.++.   .+   +.|++|..++++
T Consensus       101 Vralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A          101 IRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             EEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             cccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            56889999999999999999999999874333445999987   23   479999988754

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=94.56  E-value=0.0044  Score=63.23  Aligned_cols=53  Identities=11%  Similarity=0.165  Sum_probs=40.0

Q ss_pred             hhhhhhhhc----cccccccc--ccCceEEEeecCCcccccceeeccCCCCC---Cchhh-hhhcC
Q psy7683         449 VYALYDYEA----NNTDELSF--KTGECIIVLRKGDENEREWWWSKLNNKEG---YVPRN-LLGLY  504 (514)
Q Consensus       449 ~taL~d~~~----~~~~eL~~--k~g~~i~vl~~~~~~e~~ww~~r~~g~~G---~~P~~-~l~~~  504 (514)
                      ..++|+|..    .+..+|.|  +.|+++.|+.+.|++   ||.|+++|+.|   +||.. +|...
T Consensus       269 ~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~g---Ww~Ge~~g~~G~~glfP~~~~v~~~  331 (341)
T 2dyb_A          269 LKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDVA---LMVRQARGLPSQKRLFPWKLHITQK  331 (341)
T ss_dssp             HHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHHH---HHHHHHTTSCCBTTBCSSCEEEEEC
T ss_pred             hhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCCC---EeEEEECCCCCCCceecceeEEEec
Confidence            357888876    56667767  899999999886555   99999866555   99997 44443

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=92.75  E-value=0.037  Score=55.20  Aligned_cols=49  Identities=37%  Similarity=0.752  Sum_probs=33.3

Q ss_pred             hhhhhhhhccccc-----ccccccCceEEEeecCCcccccceeeccC------CCCCCchhhh
Q psy7683         449 VYALYDYEANNTD-----ELSFKTGECIIVLRKGDENEREWWWSKLN------NKEGYVPRNL  500 (514)
Q Consensus       449 ~taL~d~~~~~~~-----eL~~k~g~~i~vl~~~~~~e~~ww~~r~~------g~~G~~P~~~  500 (514)
                      +.|+|+|......     .|.|++||++.|....+.+   ||.++.-      ++.|++|...
T Consensus         8 vRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~~---wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A            8 VRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDDE---WWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             EEECSCBCC---------CCCBCTTCEEEEEECCSSS---EEEECCCCC--------EEECHH
T ss_pred             EEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCCC---eEEEEEeCCCCCccceeEEeChH
Confidence            3466777655433     5999999999999998776   9999863      2379999854

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=91.42  E-value=0.052  Score=53.81  Aligned_cols=51  Identities=18%  Similarity=0.285  Sum_probs=39.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~  504 (514)
                      -+.++|+|...   ++.+.+|+.+.++.+.+..   ||..+ ..|++|++|..|+..-
T Consensus       200 ~v~al~dy~~~---e~~~~kge~~~l~~~s~~~---wW~v~~~~G~~g~vPs~~~~ip  251 (283)
T 3pe0_A          200 PLLAVCDYKQV---EVTVHKGDECQLVGPAQPS---HWKVLSSSGSEAAVPSVCFLVP  251 (283)
T ss_dssp             EEEECSCEECS---SCEECTTCEEEEEEECSTT---EEEEECC---EEEEEGGGEECC
T ss_pred             eEEeecCccCC---cccccCCCEEEEeeCCCCC---ceEEEcCCCCEeeccceEEeeC
Confidence            46778999764   6999999999999886544   99887 4788999999997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	514
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	3e-26
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-19
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-18
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-09
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-18
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-13
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	9e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	1e-17
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	3e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-17
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-14
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-09
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	4e-17
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	7e-17
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	9e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	3e-16
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	3e-16
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	4e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-16
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-04
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	8e-16
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	1e-15
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	1e-15
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	1e-15
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	1e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-15
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-13
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.001
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	3e-15
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	4e-15
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	5e-15
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-15
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	8e-15
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	1e-14
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	1e-14
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	1e-14
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-14
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-14
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	2e-14
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	2e-14
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	3e-14
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	7e-14
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	1e-13
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	3e-13
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	3e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-13
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-12
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-11
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	6e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-13
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.003
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-13
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	1e-12
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	2e-12
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	3e-12
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	3e-12
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	5e-12
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	5e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-12
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-10
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-04
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	7e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	2e-11
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	5e-11
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-10
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	5e-08
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	7e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	6e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-10
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	2e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	2e-09
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	2e-09
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	4e-09
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	2e-08
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	4e-08
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	5e-07
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	2e-05
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	6e-04

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.1 bits (247), Expect = 3e-26
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query: 443 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 502
           I+N G +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLG
Sbjct: 1   IMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

Query: 503 LYP 505
           LYP
Sbjct: 61  LYP 63

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.7 bits (216), Expect = 2e-19
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  AS  G L +V     L++    P+ +N +  T LH A  AGH ++ ++L+Q    VN
Sbjct: 4   LHVASFMGHLPIV---KNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
           A+  D   PLHCAA   +  MV+ L+E+ A     T + H
Sbjct: 61  AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGH 100

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.8 bits (211), Expect = 1e-18
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 347 ITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIF 406
           +T LH A   GH  IV+ L+Q G   N  +     PLH AA   +  + ++L+++ A + 
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN 60

Query: 407 ATTHSDHETA 416
           A    D +T 
Sbjct: 61  AKAK-DDQTP 69

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.0 bits (183), Expect = 4e-15
 Identities = 24/75 (32%), Positives = 34/75 (45%)

Query: 324 GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
           G ++LV    +   D +A    G + LH A   GH DIV  L++ G   N   SDG  PL
Sbjct: 308 GNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPL 367

Query: 384 HCAASCNNLAMVRFL 398
             A     +++   L
Sbjct: 368 AIAKRLGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.9 bits (180), Expect = 1e-14
 Identities = 28/162 (17%), Positives = 49/162 (30%), Gaps = 3/162 (1%)

Query: 340 SAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
           +    +G T LH A   G   +   L++     NA   +G  PLH A   NNL +V+ L+
Sbjct: 126 ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL 185

Query: 400 EHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANN 459
             G    +    +  T        ++     +  L          +   V  L+      
Sbjct: 186 PRGGSPHSPAW-NGYTPLHIA--AKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEG 242

Query: 460 TDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
             E+             G+++               V   L+
Sbjct: 243 HAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 7e-12
 Identities = 27/97 (27%), Positives = 47/97 (48%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L  A+  G++ +          P+AA   G+T LH A+   + DIV+ L+  G   ++  
Sbjct: 136 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPA 195

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
            +G+ PLH AA  N + + R L+++G    A +    
Sbjct: 196 WNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 232

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 9/106 (8%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
              A    G T LH A   G+  +V+FL+Q   DVNA+   G+ PLH AA   +  +V  
Sbjct: 289 MVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 348

Query: 398 LVEHGACIFATTHSDHETA---AVKCEEDEEGFEGCSEFLYSVQEK 440
           L+++GA     + SD  T    A        G+   ++ L  V ++
Sbjct: 349 LLKNGASPNEVS-SDGTTPLAIAK-----RLGYISVTDVLKVVTDE 388

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 3e-10
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
           A + +G+T LH A   GH ++V  L+    + N  +  G  PLH  A   ++ +   L++
Sbjct: 226 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

Query: 401 HGACIFATTHSDHETA 416
           HG  + A T     T 
Sbjct: 286 HGVMVDA-TTRMGYTP 300

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 7e-09
 Identities = 53/321 (16%), Positives = 93/321 (28%), Gaps = 29/321 (9%)

Query: 177 AKGNLDMVKTGQLEQRIFNLNLRDSDNNKRLNGSIAISTQELDGSQPRRATLSIVTKDTS 236
             G+ ++ K   L Q    +N +  D+   L+   A      +  +     L +      
Sbjct: 42  RAGHTEVAKY--LLQNKAKVNAKAKDDQTPLH--CAARIGHTNMVK-----LLLENNANP 92

Query: 237 CPPPLPTTEPPSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKS 296
                    P        ++E +      + S     +         +      +AE+  
Sbjct: 93  NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL-- 150

Query: 297 ALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICA 356
            L+            + L  L  A     L++V         P +    G T LH A   
Sbjct: 151 LLERD--AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ 208

Query: 357 GHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
              ++ R L+Q+G   NA+   G  PLH AA   +  MV  L+   A           T 
Sbjct: 209 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN-KSGLTP 267

Query: 417 AVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRK 476
                  +EG    ++ L         + +G +             ++   G   +V   
Sbjct: 268 LHLV--AQEGHVPVADVL---------IKHGVMVDATTRMGYTPLHVASHYGNIKLV--- 313

Query: 477 GDENEREWWWSKLNNKEGYVP 497
                +         K GY P
Sbjct: 314 -KFLLQHQADVNAKTKLGYSP 333

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.7 bits (195), Expect = 1e-18
 Identities = 90/130 (69%), Positives = 106/130 (81%)

Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           PLALLLD+SLEGE +LV +    V DPS  NDEGITALHNA+CAGH +IV+FLVQFG +V
Sbjct: 1   PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 60

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSE 432
           NA DSDGW PLHCAASCNN+ + +FLVE GA +FA T+SD +TAA KCEE EEG+  CS+
Sbjct: 61  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 120

Query: 433 FLYSVQEKLG 442
           FLY VQEK+G
Sbjct: 121 FLYGVQEKMG 130

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.7 bits (203), Expect = 4e-18
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
           D +   + G T L  A+   H  +V+ L+ Q   ++N  DSDG   L  A       +  
Sbjct: 211 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE 270

Query: 397 FLVEHGACIFAT 408
            L + GA     
Sbjct: 271 LLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.5 bits (161), Expect = 8e-13
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSD-GWMPLHCAASCNNLAMVRFLVE 400
           A  E    L  A+     D+V+ L++ G +VN Q+ + GW PLH A   +   +V  L+ 
Sbjct: 1   AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

Query: 401 HGACIFATTHSDH 413
           HGA       +  
Sbjct: 61  HGADPVLRKKNGA 73

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 3e-10
 Identities = 32/147 (21%), Positives = 46/147 (31%), Gaps = 55/147 (37%)

Query: 343 NDEGITALHNAICAGHFDIVRF-------------------------------------- 364
              G TAL +A   GH ++++                                       
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHL 204

Query: 365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA---AVKCE 421
           L+  G DVN +   G  PL  A    +L +V+ L+E        T SD +TA   AV   
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV--- 261

Query: 422 EDEEGFEGCSEFLYSVQEKLGILNNGA 448
             E   +  +E L            GA
Sbjct: 262 --ELKLKKIAELL---------CKRGA 277

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-08
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           + +  + +G TAL  A+      I   L + G   +  D
Sbjct: 245 EINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 6e-07
 Identities = 25/102 (24%), Positives = 47/102 (46%), Gaps = 7/102 (6%)

Query: 316 LLLDASLEGELELVMKTARLVK---DPSAANDE-GITALHNAICAGHFDIVRFLVQFGCD 371
           LL+ A    +++LV    +L++   + +   +E G T LHNA+     DIV  L++ G D
Sbjct: 8   LLIKAVQNEDVDLV---QQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 372 VNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
              +  +G  P   AA   ++ +++  +  GA +        
Sbjct: 65  PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGF 106

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 23/135 (17%), Positives = 43/135 (31%), Gaps = 12/135 (8%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD----------SDGWMPLHCAASCN 390
             +  G TA   A   G    ++FL + G +VN +             G   L  AA   
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 391 NLAMVRFLVEH-GACIFATTHS-DHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGA 448
           ++ +++ L++  GA + A  +   +         D+   E  +  L      + +     
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERG 219

Query: 449 VYALYDYEANNTDEL 463
              L          L
Sbjct: 220 KTPLILAVEKKHLGL 234

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 382 PLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
            L  A    ++ +V+ L+E GA +         T 
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTP 42

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 74.7 bits (184), Expect = 1e-17
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++N+++G+VP  
Sbjct: 3   VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 50

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.6 bits (181), Expect = 3e-17
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
           V AL+ YEA   ++L F+ G+ I+VL K +E    W   +   K G  P+     +  V+
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEE---WLEGESKGKVGIFPKV----F--VE 58

Query: 509 PSAT 512
            SAT
Sbjct: 59  DSAT 62

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 79.8 bits (195), Expect = 4e-17
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
                G TALH A   G+ ++++ L+Q   DVN +D DGW PLH AA        R LVE
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

Query: 401 HGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILN 445
           +   + A      +TA    +ED         +L  +Q+K  +L+
Sbjct: 254 NLCDMEAVNK-VGQTAFDVADED------ILGYLEELQKKQNLLH 291

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.1 bits (170), Expect = 7e-14
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L  A+ +G  E++    +   D +  + +G T LH A   G  +  R LV+  CD+ A +
Sbjct: 203 LHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN 262

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGA 403
             G      A       ++ +L E   
Sbjct: 263 KVGQTAFDVADE----DILGYLEELQK 285

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.2 bits (152), Expect = 1e-11
 Identities = 33/161 (20%), Positives = 60/161 (37%), Gaps = 4/161 (2%)

Query: 327 ELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCA 386
           E  ++   + +  +    +       A  +G  + V  L++ G D+N  + DG   LH A
Sbjct: 21  ETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQA 80

Query: 387 ASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILN- 445
              +N+ MV+FLVE+GA I    +               G+   +E+L S    +G +N 
Sbjct: 81  CIDDNVDMVKFLVENGANINQPDNEGWIP---LHAAASCGYLDIAEYLISQGAHVGAVNS 137

Query: 446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 486
            G        E    + L  +     + +    + E     
Sbjct: 138 EGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML 178

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.3 bits (134), Expect = 3e-09
 Identities = 46/121 (38%), Positives = 68/121 (56%), Gaps = 6/121 (4%)

Query: 305 KKRCVSFDPLALLLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDI 361
           KK  V FD  A+ L A   G+ E V+   RL++   D + AN +G+TALH A    + D+
Sbjct: 32  KKTKVKFDDGAVFLAACSSGDTEEVL---RLLERGADINYANVDGLTALHQACIDDNVDM 88

Query: 362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCE 421
           V+FLV+ G ++N  D++GW+PLH AASC  L +  +L+  GA + A          +  E
Sbjct: 89  VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148

Query: 422 E 422
           E
Sbjct: 149 E 149

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.2 bits (180), Expect = 4e-17
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 51

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.4 bits (178), Expect = 7e-17
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYD+EA   DEL F++GE + VL   + +   WW  +L+NK G  P N
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPS---WWTGRLHNKLGLFPAN 51

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 72.0 bits (177), Expect = 9e-17
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSN 52

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 77.6 bits (190), Expect = 3e-16
 Identities = 28/246 (11%), Positives = 58/246 (23%), Gaps = 15/246 (6%)

Query: 247 PSDDNINNNIEDIKEDKTSDFSTESPDQTDRVINSSPSDSNNQEIAEIKSALKSGKLGKK 306
           P     N     I  ++ S  +    +     +   P   N +++ ++     +      
Sbjct: 20  PWILWENLFQHFISANELSLMTLSYKEAIHIFL---PGTKNMEQVRQLLCLYYAHYNRNA 76

Query: 307 RCVSFDPLA-------LLLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICA 356
           + +  D          +   A++ G    +     L+           E   A   A   
Sbjct: 77  KQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 136

Query: 357 GHFDIVRFLVQFGCDVNAQDSD--GWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHE 414
           GH  ++  L +              +     AA   +L ++  L E              
Sbjct: 137 GHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN 196

Query: 415 TAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVL 474
             A +      G      FL      L             Y          +  E     
Sbjct: 197 YYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAF 256

Query: 475 RKGDEN 480
           +  + +
Sbjct: 257 KLSNPD 262

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 58.4 bits (140), Expect = 7e-10
 Identities = 14/92 (15%), Positives = 22/92 (23%), Gaps = 11/92 (11%)

Query: 316 LLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCD---- 371
               ++ +G  +LV K               +  L         D +RFL+         
Sbjct: 255 AFKLSNPDGVFDLVTK------SECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALA 308

Query: 372 -VNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
                  D    L  A    N      L+   
Sbjct: 309 PTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 44.5 bits (104), Expect = 2e-05
 Identities = 24/130 (18%), Positives = 34/130 (26%), Gaps = 22/130 (16%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
            +     GE  +    AR V        E   A   +   G FD+V            Q 
Sbjct: 227 EIHEFEYGEKYVNPFIARHV----NRLKEMHDAFKLSNPDGVFDLV------TKSECLQG 276

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFA----TTHSDHETA---AVKCEEDEEGFEG 429
                 L        L  +RFL+            T   D       A++      G +G
Sbjct: 277 FYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALR-----LGNQG 331

Query: 430 CSEFLYSVQE 439
               L S+  
Sbjct: 332 ACALLLSIPS 341

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.5 bits (173), Expect = 3e-16
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V ALYD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N
Sbjct: 5   VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSN 52

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.2 bits (172), Expect = 4e-16
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           ALY +    + +L F+ G+ I +L+K D     WW  ++N +EG  P N
Sbjct: 6   ALYSFAGEESGDLPFRKGDVITILKKSDSQND-WWTGRVNGREGIFPAN 53

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 76.3 bits (186), Expect = 4e-16
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
           +++G T +  A   G  ++V +L+Q G  V A D+        A + N+  +V   
Sbjct: 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 60.1 bits (144), Expect = 1e-10
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQ-FGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
              +   +G TALH A    +  IV++LV   G + + QD DG  P+  AA    + +V 
Sbjct: 179 RKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM 238

Query: 397 FLVEHGACIFATTHSDHETA 416
           +L++ GA + A   +   TA
Sbjct: 239 YLIQQGASVEAVD-ATDHTA 257

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 54.0 bits (128), Expect = 1e-08
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 345 EGITALHNAICAGHFDIVRFLVQFGCDVNAQDS-DGWMPLHCAASCNNLAMVRFLVEHGA 403
           E    LH    AG + I   + +    VN  D       LH  AS ++      L+ H A
Sbjct: 1   ESPIKLHTE-AAGSYAITEPITRES--VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEA 57

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 16/133 (12%)

Query: 313 PLALLLDASLEGEL-ELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQF--- 368
           P+ L  +A+    + E + + +  + DP        T LH        +    L+     
Sbjct: 3   PIKLHTEAAGSYAITEPITRESVNIIDP----RHNRTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 369 -----GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEED 423
                G DVNA D D   PL  A       +V +L++ GA       S+        +  
Sbjct: 59  ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA---LHQAA 115

Query: 424 EEGFEGCSEFLYS 436
                G   ++ +
Sbjct: 116 ANRDFGMMVYMLN 128

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 317 LLDASLEGELELVMKTARLVK---DPSAANDEGITALHNAICAGHFDIVRFLVQ 367
           ++ A+ EG +E+VM    L++      A +    TA   A    H +IV    +
Sbjct: 225 IMLAAQEGRIEVVM---YLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.9 bits (171), Expect = 8e-16
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKEGYVPRNLLGLYPRV 507
            +A+Y ++A N +ELS    + + +L   D     EWW +++N K+GYVP N +      
Sbjct: 16  YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES- 74

Query: 508 QPSA 511
            PS+
Sbjct: 75  GPSS 78

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (169), Expect = 1e-15
 Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 2/49 (4%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           A YD++A   DELSFK G+ + VL   +E ++ W+ ++LN K+G++P+N
Sbjct: 5   AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKN 51

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (170), Expect = 1e-15
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V  LY + +   +EL+F+ GE + V+ K + +   W       + G VP+N
Sbjct: 9   VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKN 59

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (169), Expect = 1e-15
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 448 AVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           A++ ALYDYEA   D+LSF  GE   +L   +    +WW   S    + GY+P N
Sbjct: 1   ALFVALYDYEAITEDDLSFHKGEKFQILNSSEG---DWWEARSLTTGETGYIPSN 52

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.6 bits (168), Expect = 1e-15
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V AL+D+  N+ ++L FK G+ + +  K +E    WW ++    K G +P  
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVP 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 2e-15
 Identities = 19/56 (33%), Positives = 26/56 (46%)

Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           T LH A+ A    ++  L++ G D  A+   G  PL  A    N  + R L  HGA
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGA 249

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 69.0 bits (167), Expect = 1e-13
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCD---VNAQDSDGWMPLHCAASCNNLAMVRFLV 399
            ++G TALH A+   H   + FL+ F      ++ Q+  G   LH AA     + V  L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 400 EHGACIFATTHSDH 413
             GA +       H
Sbjct: 66  AAGAGVLVAERGGH 79

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 23/110 (20%), Positives = 30/110 (27%), Gaps = 3/110 (2%)

Query: 317 LLDASLEGELELVMKTARLVKDPS---AANDEGITALHNAICAGHFDIVRFLVQFGCDVN 373
           L  A +      +                ND G TALH A   G    V  L   G  V 
Sbjct: 13  LHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL 72

Query: 374 AQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEED 423
             +  G   LH A           L++            + T +  C  D
Sbjct: 73  VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD 122

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 8/42 (19%), Positives = 12/42 (28%)

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHE 414
                DG   LH A    +   + FL+   A        +  
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL 44

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDG 379
           DP+A    G T L +A+   +  + R L   G     +  DG
Sbjct: 217 DPTARMYGGRTPLGSALLRPNPILARLLRAHGAP---EPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 0.001
 Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 2/103 (1%)

Query: 315 ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNA 374
              +D+    E E   +         A N +G T LH A+     ++VR L   G D+N 
Sbjct: 127 PAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

Query: 375 -QDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
            + + G  PLH A      +++  L++ GA   A  +    T 
Sbjct: 187 PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY-GGRTP 228

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A ++++  N DELS   G+ I V R  +     WW   LN + G+ P N
Sbjct: 13  VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGRTGWFPSN 60

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (165), Expect = 4e-15
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 447 GAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
           G ++ A+YDY A + DE+SFK G+ II ++  DE    W +  +    + G +P N
Sbjct: 3   GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEG---WMYGTVQRTGRTGMLPAN 55

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (165), Expect = 5e-15
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           V ALYDYEA + ++LSF+ G+ ++VL +      EWW   S    KEGY+P N
Sbjct: 7   VVALYDYEAIHHEDLSFQKGDQMVVLEESG----EWWKARSLATRKEGYIPSN 55

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (164), Expect = 8e-15
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY Y +    +L+F  GE I+V +K      EWW   + ++ G  P N
Sbjct: 11  YIALYPYSSVEPGDLTFTEGEEILVTQKDG----EWWTGSIGDRSGIFPSN 57

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.7 bits (163), Expect = 8e-15
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V ALYDY   N ++L  + G+   +L + +     WW ++  N +EGY+P N
Sbjct: 11  VVALYDYMPMNANDLQLRKGDEYFILEESNL---PWWRARDKNGQEGYIPSN 59

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
            LY Y   + DE++   G+ I ++ +   +      +    + G VP  
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTT 52

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.3 bits (162), Expect = 1e-14
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALYD+ A+  + LS   GE + VL        EW  ++  N +G+VP N
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNH--NGEWCEAQTKNGQGWVPSN 51

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.4 bits (162), Expect = 1e-14
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 499
           V A+YD++A    +L  + G+  I+L K   N+  WW ++     EGY+P N
Sbjct: 5   VVAMYDFQATEAHDLRLERGQEYIILEK---NDLHWWRARDKYGSEGYIPSN 53

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (162), Expect = 2e-14
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             AL  + A   + L+F   + I VL    E +  WW+ +++   G+ P++ + + P  +
Sbjct: 13  AQALCSWTAKKDNHLNFSKHDIITVL----EQQENWWFGEVHGGRGWFPKSYVKIIPGSE 68

Query: 509 PS 510
             
Sbjct: 69  SG 70

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (161), Expect = 2e-14
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
             A YDY+A   +EL+F   + II +   D+   +WW  +L  +  +G  P N
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSN 52

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 2e-14
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRN 499
           V AL+DY+A   DEL+F     I  + K +     WW      K+  + P N
Sbjct: 9   VKALFDYKAQREDELTFIKSAIIQNVEKQEGG---WWRGDYGGKKQLWFPSN 57

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 2e-14
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 499
           V AL+ YE ++  +L F+ GE + +L +      EWW   S    +EG++P N
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRILEQSG----EWWKAQSLTTGQEGFIPFN 57

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 3e-14
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 499
           ALYDYE+    +LSFK GE + ++   + +   WW +      + GY+P N
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGD---WWLAHSLSTGQTGYIPSN 54

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 7e-14
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V A+YDY ANN DELSF  G+ I V+ K D +   WW  ++N   G  P N
Sbjct: 37  VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSN 84

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 63.4 bits (154), Expect = 1e-13
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 499
           V ALYDY+ N+  EL+ +  E   +L   + +   WW  +  N  EGY P +
Sbjct: 1   VIALYDYQTNDPQELALRCDEEYYLLDSSEIH---WWRVQDKNGHEGYAPSS 49

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 63.1 bits (153), Expect = 3e-13
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWW-----------SKLNNKEGYV 496
           V A +DY A +TDEL  K G+ ++V+   + E + E W             +L    G  
Sbjct: 15  VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 74

Query: 497 PRN 499
           P N
Sbjct: 75  PEN 77

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (152), Expect = 3e-13
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLGLYPRV 507
             A Y++      +L F  G+ + ++    +    W+ +K    +EG +P N +      
Sbjct: 9   CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP--NWYKAKNKVGREGIIPANYVQKREG- 65

Query: 508 QPSATPQ 514
              A  +
Sbjct: 66  -VKAGTK 71

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.1 bits (160), Expect = 5e-13
 Identities = 43/190 (22%), Positives = 65/190 (34%), Gaps = 40/190 (21%)

Query: 308 CVSFDPLALLLDASLEGELELVMKTARLVK-DPSAANDEGITALHNAICAGHFD------ 360
           CVS     ++ + +  G+LE + ++    K   +  + +  TALH A  AGH +      
Sbjct: 1   CVSN---LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 57

Query: 361 ---------------------------IVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLA 393
                                      IV+ L+  G  VNA + +G  PLH AAS N   
Sbjct: 58  QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE 117

Query: 394 MVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALY 453
           +   L+E GA   A    DH  A        +G       L   +    I +      L+
Sbjct: 118 IAVMLLEGGANPDAK---DHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH 174

Query: 454 DYEANNTDEL 463
                   E 
Sbjct: 175 LACDEERVEE 184

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.0 bits (157), Expect = 1e-12
 Identities = 14/60 (23%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
             + EG T LH A      +  + LV  G  +  ++ +   PL  A       +++ +VE
Sbjct: 164 IQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAKG-GLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.9 bits (149), Expect = 1e-11
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 4/125 (3%)

Query: 339 PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFL 398
            +A N  G T LH A      +I   L++ G + +A+D      +H AA+  NL M+  L
Sbjct: 96  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHIL 155

Query: 399 VEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN 458
           + + A        D E         +E     ++ L S    + I N      L      
Sbjct: 156 LYYKASTNIQ---DTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKG 211

Query: 459 NTDEL 463
               +
Sbjct: 212 GLGLI 216

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 5e-11
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 1/100 (1%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD 376
           L  A+ +   E+ +       +P A +    TA+H A   G+  ++  L+ +    N QD
Sbjct: 107 LHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQD 166

Query: 377 SDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           ++G  PLH A     +   + LV  GA I+     + +T 
Sbjct: 167 TEGNTPLHLACDEERVEEAKLLVSQGASIYIENK-EEKTP 205

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 6e-13
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 506
             AL DY A +   L+   G+ + V  K     R +W   +           LG +P 
Sbjct: 24  AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 81

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.0 bits (159), Expect = 7e-13
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 348 TALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIF 406
             LH A     F  V+ L+      +  +D DG +PLH + S     +  FL+     + 
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 61

Query: 407 ATTHSDH 413
              + D 
Sbjct: 62  LDDYPDD 68

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.0 bits (146), Expect = 3e-11
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 343 NDEGITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
           + +G T L +A+  GH D    LV ++G + +  D+ G      A    N  + +F + +
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNN 225

Query: 402 GA 403
             
Sbjct: 226 VV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 2e-05
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCD-VNAQDSDGWMPLHCAASCNNLAMVRFLVE- 400
           +      LH A   G   ++  L   G   VN QD  GW PL  A +  +      LVE 
Sbjct: 135 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 194

Query: 401 HGACIFATTHSDHETA 416
           +GA      +     A
Sbjct: 195 YGAEYDLVDN-KGAKA 209

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.1 bits (84), Expect = 0.003
 Identities = 8/35 (22%), Positives = 11/35 (31%)

Query: 382 PLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           PLH A   N    V+ L+     +      D    
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIP 37

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.7 bits (83), Expect = 0.003
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A +E E   V     L+          + +G   LH ++     +I  FL+    +V
Sbjct: 4   LHQACMENEFFKV---QELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENV 60

Query: 373 NAQDSDGWMPLHCAASCNN 391
           N  D              +
Sbjct: 61  NLDDYPDDSGWTPFHIACS 79

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 8e-13
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVR 396
              G +ALH+A   G   +VR LV+ G D + ++     PL  A S   + ++R
Sbjct: 174 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.6 bits (150), Expect = 8e-12
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 344 DEGITALHNAICAGHFDIVRFLVQF----GCDVNAQDSDGWMPLHCAASCNNLAMVRFLV 399
           ++G T LH A+  G+   V  LV      G +++  ++    PLH A      ++VR LV
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 400 EHGACIFATTHSDH 413
             GA   A      
Sbjct: 61  TAGASPMALDRHGQ 74

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 3e-08
 Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)

Query: 350 LHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATT 409
           L +A+      +V+ L+Q G +VNAQ   G   LH A+    L +VR LV  GA      
Sbjct: 148 LIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN 207

Query: 410 HSDHETA 416
              ++T 
Sbjct: 208 C-HNDTP 213

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 317 LLDASLEGELELVMKTARLVK----DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
           L  A ++G L  V +   L +    +    N+   T LH A+      +VR LV  G   
Sbjct: 7   LHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP 66

Query: 373 NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDH 413
            A D  G    H A    +   +R L++  A       + +
Sbjct: 67  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 107

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 17/47 (36%), Positives = 18/47 (38%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR 363
           L  AS  G L LV    R   D S  N    T L  A      DI+R
Sbjct: 181 LHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 1e-12
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
             A+  Y A   DE+S   GE + V+ K  +    WW  + ++  GY P   L
Sbjct: 3   YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYL 52

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.2 bits (146), Expect = 2e-12
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 449 VYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRN 499
             ALYD+   N + E++ K G+ + +L K D    + +WW  +  N   GY+P N
Sbjct: 8   ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 62

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 3e-12
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 508
             A+  Y A   DE+S   GE + V+ K  +    WW  + ++  GY P   L    +  
Sbjct: 17  YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQKSGQDV 73

Query: 509 PSATPQ 514
             A  Q
Sbjct: 74  SQAQRQ 79

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 3e-12
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
             A+ DYE  +  E++  TG+ + V+ K +     WW+ ++  K G++P + L
Sbjct: 5   YRAIADYEKTSGSEMALSTGDVVEVVEKSESG---WWFCQMKAKRGWIPASFL 54

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 5e-12
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
             + YD+ A N+ ELS    + + +L    +    W     +   G+VP N+L
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILDDRRQW---WKVRNASGDSGFVPNNIL 53

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 5e-12
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
             ALY  +A +  ELSF  G     +    E    W    LN K G +P N
Sbjct: 13  AKALYACKAEHDSELSFTAGTVFDNVHPSQEP--GWLEGTLNGKTGLIPEN 61

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.3 bits (155), Expect = 6e-12
 Identities = 16/75 (21%), Positives = 27/75 (36%)

Query: 313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV 372
                     +  LE +     +    +A +  G T L+ A   G+  IV  L+ +G D 
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 285

Query: 373 NAQDSDGWMPLHCAA 387
              +  G  P+   A
Sbjct: 286 FIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.7 bits (143), Expect = 2e-10
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 337 KDPSAANDEGITALHNAICAGHFDIVRFLVQ---FGCDVNAQDSDGWMPLHCAASCNNLA 393
           +   +  +E  +  ++        I+  L         +NAQDS+G   L+ AA   N++
Sbjct: 214 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 273

Query: 394 MVRFLVEHGACIFATTHS 411
           +V  L+++GA  F    S
Sbjct: 274 IVDALLDYGADPFIANKS 291

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.4 bits (132), Expect = 5e-09
 Identities = 28/179 (15%), Positives = 54/179 (30%), Gaps = 19/179 (10%)

Query: 256 IEDIKEDKTSDFSTESPDQTDRVINSSPSDSNN---------QEIAEIKSALKSGKLGKK 306
           I     D TSDF + SP +  + + S   + N          Q +   +       L   
Sbjct: 3   IITFTHDLTSDFLS-SPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNND 61

Query: 307 RCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAN------DEGITALHNAICAGHFD 360
                               + +++        +  N      + G T LH      + +
Sbjct: 62  SSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLE 121

Query: 361 IVRFLVQFGCDVNAQDSDGWMPLHCA---ASCNNLAMVRFLVEHGACIFATTHSDHETA 416
           +V+ LV+ G +    D+ G   L  A    +  +      L+++         S + T 
Sbjct: 122 LVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTI 180

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.0 bits (151), Expect = 6e-12
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 343 NDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
              G TALH A+   + D+V  L++ G DVN     G+ P        +  + + L +  
Sbjct: 142 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT 201

Query: 403 ACIFATTHSDHETAAVKCEEDEEGFE 428
                              EDEE ++
Sbjct: 202 LENLQMLPES---------EDEESYD 218

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 4e-10
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 345 EGITALHNAICAGHFDIVRFLVQF----GCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE 400
           +G + LH AI      +   +++        +N Q++    PLH A   N   +   L+ 
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLG 60

Query: 401 HGACIFATTHSDH 413
            G          +
Sbjct: 61  AGCDPELRDFRGN 73

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 5/59 (8%)

Query: 326 LELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCD-----VNAQDSDG 379
            +LV    +   D +    +G +            I + L Q   +       ++D + 
Sbjct: 158 PDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 216

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.9 bits (142), Expect = 1e-11
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 451 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 510
           ALY +EA N DE+SF +G+ I V  K    E  W +       G+ P N +   P  +  
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEK-TVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68

Query: 511 ATPQ 514
               
Sbjct: 69  KAVS 72

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 61.7 bits (148), Expect = 1e-11
 Identities = 15/75 (20%), Positives = 27/75 (36%)

Query: 324 GELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
              E V        +  A +D+  T L  A   G ++  + L+    +    D    +P 
Sbjct: 134 NNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPR 193

Query: 384 HCAASCNNLAMVRFL 398
             A+   +  +VR L
Sbjct: 194 DVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.9 bits (120), Expect = 7e-08
 Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 1/79 (1%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +AA++ G TALH A    + + V  L+    + +AQD     PL  AA   +    + 
Sbjct: 115 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA 174

Query: 398 LVEHGACIFATTHSDHETA 416
           L+++ A    T H      
Sbjct: 175 LLDNFANREITDH-MDRLP 192

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 10/136 (7%)

Query: 332 TARLVK-------DPSAANDE-GITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPL 383
           TA+++        + +A  D+ G T+LH A      D  + L+  G D N+QD+ G  PL
Sbjct: 1   TAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPL 60

Query: 384 HCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGI 443
           H A + + + + + L+ + A        D  T            EG  E L +    +  
Sbjct: 61  HAAVAADAMGVFQILLRNRATNLNARMHDGTT--PLILAARLAIEGMVEDLITADADINA 118

Query: 444 LNNGAVYALYDYEANN 459
            +N    AL+   A N
Sbjct: 119 ADNSGKTALHWAAAVN 134

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 449 VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 499
           V  ++ + A NN   LSF  G+ + +L   +++   +         G+ P +
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSS 61

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 5e-11
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDEN--EREWWWSKLNNKEGYVPRNLLGLY-P 505
                 Y A+ +++LS   G+ I++L+K      + E        ++G+ P + + L  P
Sbjct: 10  AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP 69

Query: 506 RVQPSATP 513
             + ++ P
Sbjct: 70  SSERASGP 77

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (137), Expect = 2e-10
 Identities = 21/139 (15%), Positives = 39/139 (28%), Gaps = 42/139 (30%)

Query: 312 DPLALLLDASLEGELELVMKTARLVKDPSA------ANDEGITALHNAICA---GHFDIV 362
             L  L +A    ++  +++      D +        ++   TALH A+ +       IV
Sbjct: 5   AKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIV 64

Query: 363 RFLVQFGCDV---------------------------------NAQDSDGWMPLHCAASC 389
            FLVQ   ++                                    +  G  PL  A   
Sbjct: 65  DFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRL 124

Query: 390 NNLAMVRFLVEHGACIFAT 408
            +      L +  +  F +
Sbjct: 125 KHEHCEELLTQALSGRFNS 143

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 5e-08
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQ------DSDGWMPLHCAASC---NN 391
           A     + +L  A+       +      G D+  +             LH A       +
Sbjct: 1   ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTS 60

Query: 392 LAMVRFLVEHGACIFATTHSDH 413
           L +V FLV++   +   T    
Sbjct: 61  LHIVDFLVQNSGNLDKQTGKGS 82

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.6 bits (132), Expect = 6e-10
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRF 397
           D +A +   +TALH A    H ++V  L+++G DV+ Q          +    N  +   
Sbjct: 92  DVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEI 151

Query: 398 L 398
           L
Sbjct: 152 L 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (94), Expect = 7e-05
 Identities = 12/66 (18%), Positives = 15/66 (22%)

Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
             L  A  AG  D VR L+  G                A   +       L    +    
Sbjct: 4   KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63

Query: 408 TTHSDH 413
           T     
Sbjct: 64  TKVDRT 69

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.0 bits (94), Expect = 7e-05
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 317 LLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFL 365
           L  A+     E+V    +   D    +    TA   +I  G+ D+   L
Sbjct: 104 LHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 9/33 (27%), Positives = 11/33 (33%)

Query: 378 DGWMPLHCAASCNNLAMVRFLVEHGACIFATTH 410
           D    L  AA       VR L+ +GA       
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWL 33

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.0 bits (127), Expect = 6e-10
 Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV 507
           Y +          L    G+ + + +   E+   WW  +    N+ G+ P N       V
Sbjct: 14  YGIPPPPGAFGPFLRLNPGDIVELTKAEAEH--NWWEGRNTATNEVGWFPCNR------V 65

Query: 508 QP 509
            P
Sbjct: 66  HP 67

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (131), Expect = 9e-10
 Identities = 14/66 (21%), Positives = 21/66 (31%)

Query: 348 TALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFA 407
             L +A   G  + +  L+Q   +VNAQ+  G   L      N     R L+        
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLK 62

Query: 408 TTHSDH 413
                 
Sbjct: 63  DRTGFA 68

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 9e-08
 Identities = 6/52 (11%), Positives = 14/52 (26%)

Query: 351 HNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG 402
             A       +   +     +V  ++  G      A       +V  +  +G
Sbjct: 105 LAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 341 AANDEGITALHNAICAGHFDIVRFLVQFG 369
             N +G TA   A   G  ++V  +   G
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 342 ANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH 401
            +  G   +H A+  GH  +V FL     D++ +D+ G  PL  A       +V  L  H
Sbjct: 97  PDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (100), Expect = 1e-05
 Identities = 11/67 (16%), Positives = 19/67 (28%), Gaps = 1/67 (1%)

Query: 348 TALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIF 406
             L  A   G    VR L+ +     +A +  G   L      +    +  L +  +   
Sbjct: 4   DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNV 63

Query: 407 ATTHSDH 413
             T    
Sbjct: 64  QDTSGTS 70

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 338 DPSAANDEGITALHNAICAGHFDIVRFLVQ 367
           D    +  G+T L  A+  G  D+V  L  
Sbjct: 125 DLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (125), Expect = 2e-09
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRV 507
             A  ++ A    ++S   G+ + V++K D    +  W       +G+V  + L  Y   
Sbjct: 20  FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR 79

Query: 508 QPSATPQ 514
           +  +   
Sbjct: 80  RSHSDAS 86

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 52.6 bits (126), Expect = 2e-09
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 13/72 (18%)

Query: 448 AVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVP 497
           AV     Y A   D+       +SF+  + + V  K + +   WW  +L     + G++P
Sbjct: 23  AVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNND---WWIGRLVKEGCEIGFIP 79

Query: 498 RNLLGLYPRVQP 509
             +     R+Q 
Sbjct: 80  SPVKLENMRLQH 91

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 4e-09
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 14/77 (18%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKG------------DENEREWWWSK--LNNKEG 494
             ALYDY+    +++    G+ + V +                 E  W         + G
Sbjct: 6   YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 65

Query: 495 YVPRNLLGLYPRVQPSA 511
             P   +    R + S 
Sbjct: 66  DFPGTYVEYIGRKKISP 82

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.0 bits (116), Expect = 2e-08
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK------LNNKEGYVPRNLLG 502
           +  + DY A   +E+    GE + VL     N++                EG+VP ++L 
Sbjct: 10  MTVIKDYYALKENEICVSQGEVVQVLAV---NQQNMCLVYQPASDHSPAAEGWVPGSILA 66

Query: 503 LYPRVQPSA 511
            +    PS+
Sbjct: 67  PFSG--PSS 73

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 48.9 bits (116), Expect = 4e-08
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 449 VYALYDYEANNTD-----ELSFKTGECIIVLRKGDENEREWWWSKL------NNKEGYVP 497
           + AL+DY+           LSF+ G+ + V+  GDE    WW ++        +  G++P
Sbjct: 4   IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEE---WWQARRVHSDSETDDIGFIP 60

Query: 498 RNLL 501
               
Sbjct: 61  SKRR 64

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 5e-07
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 451 ALYDYEA------NNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 501
           A Y Y        N   EL    G+ + V    DE+   +    L+ + G VP N +
Sbjct: 22  ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGF-YEGELLDGQRGLVPSNFV 77

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 24/70 (34%)

Query: 344 DEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA 403
           +     L  A   G  + VR L++ G + NA +S G  P+      +       L+    
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 404 CIFATTHSDH 413
              A   +  
Sbjct: 61  PNCADPATLT 70

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (88), Expect = 6e-04
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 13/76 (17%)

Query: 448 AVYALYDYEANNTD-------ELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVP 497
           AV     Y     +        +SF   + + +  K + +   WW  +L     + G++P
Sbjct: 25  AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNND---WWIGRLVKEGCEIGFIP 81

Query: 498 RNLLGLYPRVQPSATP 513
             L     R+Q     
Sbjct: 82  SPLRLENIRIQQEQKR 97

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	514
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.88
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.88
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.87
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.87
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.86
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.85
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.85
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.84
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.84
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.84
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.84
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.83
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.83
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.82
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.82
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.81
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.81
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.8
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.8
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.8
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.79
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.79
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.78
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.75
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.74
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.7
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.6
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.1
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	98.8
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.77
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	98.75
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	98.75
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.75
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.71
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.7
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	98.69
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	98.68
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	98.68
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	98.68
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	98.65
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	98.64
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	98.6
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	98.6
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	98.59
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	98.57
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.57
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	98.56
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	98.56
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	98.53
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.53
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	98.5
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	98.5
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	98.5
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	98.48
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	98.47
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	98.47
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	98.46
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	98.46
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	98.45
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	98.44
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	98.42
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	98.41
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	98.36
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	98.36
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	98.36
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	98.35
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	98.33
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	98.28
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	98.26
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.21
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	98.2
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	98.19
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	98.14
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	98.11
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	97.91
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	97.45
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	86.4

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4e-26  Score=200.65  Aligned_cols=129  Identities=69%  Similarity=1.121  Sum_probs=118.8

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCch
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNL  392 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~  392 (514)
                      ++++|+.||..|++++|++|+++|+|+|.+|.+|+||||+||..|+.+++++|+++|++++.+|.+|+||||+|+.+|+.
T Consensus         1 pl~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           1 PLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             ChHHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         393 AMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       393 eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      ++|++|+++||+++..+..++.++...+.+...|+.+++++|+..+.++
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~~l  129 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM  129 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHHhC
Confidence            9999999999999998877555555555556889999999999987664

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=7.1e-25  Score=208.45  Aligned_cols=167  Identities=20%  Similarity=0.158  Sum_probs=142.2

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+.+.++.++..+.....  ....+.++++.++..++.+++++|+++|++++.+|..|+||||+|+..|+.+++++
T Consensus        44 Aa~~g~~e~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~  121 (223)
T d1uoha_          44 ACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM  121 (223)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCC--CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHhhhhccccccccccccccc--ccccccccccccccccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHH
Confidence            5566677777766666533222  22455666777777777888888888999999999999999999999999999999


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccc
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGIL  444 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~  444 (514)
                      |+++|++++.+|..|.||||+|+..++.+++++|+.+|++++..|..|.|+++.++   ..|+.+++++|+++|+++++.
T Consensus       122 Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa---~~g~~~~v~~LL~~Gad~~~~  198 (223)
T d1uoha_         122 LLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLAC---DEERVEEAKLLVSQGASIYIE  198 (223)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHH---HTTCHHHHHHHHHTTCCSCCC
T ss_pred             HHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceecccc---ccCcHHHHHHHHHCCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999887   788999999999999999999


Q ss_pred             cccchhhhhhhh
Q psy7683         445 NNGAVYALYDYE  456 (514)
Q Consensus       445 d~~g~taL~d~~  456 (514)
                      |..|.++++.+.
T Consensus       199 d~~g~tpl~~A~  210 (223)
T d1uoha_         199 NKEEKTPLQVAK  210 (223)
T ss_dssp             CTTSCCHHHHCC
T ss_pred             CCCCCCHHHHHH
Confidence            999999987553

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=3.9e-24  Score=184.69  Aligned_cols=107  Identities=23%  Similarity=0.265  Sum_probs=103.3

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchH
Q psy7683         314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLA  393 (514)
Q Consensus       314 ~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~e  393 (514)
                      .|+|++|+..|+.++|++|+++|++++.+|..|+||||+||..|+.+++++|+++|++++.+|..|+||||+|+..|+.+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchh
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcccccccCCCCchhhhhh
Q psy7683         394 MVRFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       394 ivklLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      ++++|+++|+|++.+|..|.|+++.+.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHh
Confidence            999999999999999999999987653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.3e-23  Score=201.41  Aligned_cols=175  Identities=20%  Similarity=0.075  Sum_probs=152.4

Q ss_pred             ccCcccHHHHHHHHHcC-CCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHH
Q psy7683         285 DSNNQEIAEIKSALKSG-KLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVR  363 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g-~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVk  363 (514)
                      ++..++.+.++.||+.| +....+..+..|.||||+||..|+.++|++|+++|++++.+|..|+||||+|+..++.++++
T Consensus        16 A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~   95 (255)
T d1oy3d_          16 AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCAC   95 (255)
T ss_dssp             HHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTTTCHHHHH
T ss_pred             HHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhhhhhccCchHHHH
Confidence            67788999999999887 44556677788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCC-----------------------------------------------CCcccCCCCCchhhhHhhcCchHHHH
Q psy7683         364 FLVQFGC-----------------------------------------------DVNAQDSDGWMPLHCAASCNNLAMVR  396 (514)
Q Consensus       364 lLL~~Ga-----------------------------------------------dvn~~D~~G~TPLh~Aa~~g~~eivk  396 (514)
                      +|++.+.                                               +++.+|..|+||||+||..++.++++
T Consensus        96 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~  175 (255)
T d1oy3d_          96 VLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVR  175 (255)
T ss_dssp             HHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccccccccccccccc
Confidence            9875432                                               24566788999999999999999999


Q ss_pred             HHHhcCcccccc-cCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccccc
Q psy7683         397 FLVEHGACIFAT-THSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       397 lLL~~GAdin~~-d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~e  462 (514)
                      +|+++|++.+.. +..|.|+++.++   ..|+.+++++|+++|++++.+|..|.++|+.+......+
T Consensus       176 ~Ll~~~~~~~~~~~~~g~TpL~~A~---~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~  239 (255)
T d1oy3d_         176 LLRDAGADLNKPEPTCGRTPLHLAV---EAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPI  239 (255)
T ss_dssp             HHHHHTCCTTCCCTTTCCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHH
T ss_pred             chhcccccccccccccccccccccc---cccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence            999999999875 456888888777   789999999999999999999999999998765544433

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.2e-23  Score=183.26  Aligned_cols=120  Identities=21%  Similarity=0.244  Sum_probs=113.3

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCC-chhhhHhhcCc
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGW-MPLHCAASCNN  391 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~-TPLh~Aa~~g~  391 (514)
                      +.++||+|+..|++++|++|+++|++++.+|.+|+|+||+|+ .|+.+++++|+++|++++.+|..|. ||||+|++.|+
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~   81 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGF   81 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTC
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999999999999999999775 7999999999999999999999876 69999999999


Q ss_pred             hHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         392 LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       392 ~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      .+++++|+++|++++.+|..|.|++++++   ..|+.+|+++|+.
T Consensus        82 ~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~---~~g~~~~v~~Lls  123 (125)
T d1bi7b_          82 LDTLVVLHRAGARLDVRDAWGRLPVDLAE---ELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHHHHHTCCSSCCCTTCCCHHHHHH---HHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccCCCCCHHHHHH---HcCCHHHHHHHHh
Confidence            99999999999999999999999999887   8899999999975

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=9.8e-23  Score=182.79  Aligned_cols=149  Identities=18%  Similarity=0.292  Sum_probs=135.8

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      ..++..|+++.|+.+|..+... .+..+..|.||||+|+ .|+.+++++|++.+++++..+..|.++|++++..++.+++
T Consensus         7 ~~Aa~~g~~~~vk~lL~~~~~~-~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   84 (156)
T d1bd8a_           7 SGAAARGDVQEVRRLLHRELVH-PDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTL   84 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCC-TTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhCCCC-CCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccccc
Confidence            3477889999999999876443 4455678999999887 5889999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      ++++++|++++.+|..|+||||+||..|+.+++++|+ .|++++.+|..|.||+++|+   ..|+.+++++|+++
T Consensus        85 ~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~---~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_          85 KVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELAL---QRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHH---HSCCHHHHHHHHTT
T ss_pred             ccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHH---HcCCHHHHHHHHhh
Confidence            9999999999999999999999999999999999887 78999999999999999887   89999999999876

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.87  E-value=3.3e-22  Score=195.17  Aligned_cols=170  Identities=18%  Similarity=0.217  Sum_probs=152.6

Q ss_pred             CCcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         282 SPSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       282 ~~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      +..++..|+++.++.||+.|..  .+..+..|.||||+|+..|+.++|++|+++|++.+..+..+.+|||+|+..++.++
T Consensus        44 l~~A~~~G~~~~v~~Ll~~Gad--vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~  121 (291)
T d1s70b_          44 FLAACSSGDTEEVLRLLERGAD--INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDI  121 (291)
T ss_dssp             HHHHHHHTCHHHHHHHHHHCCC--TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCC--CCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccccccch
Confidence            4457888999999999999833  34556789999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccC------------------------------------------------------------CCCCc
Q psy7683         362 VRFLVQFGCDVNAQD------------------------------------------------------------SDGWM  381 (514)
Q Consensus       362 VklLL~~Gadvn~~D------------------------------------------------------------~~G~T  381 (514)
                      +++|+++|+..+..|                                                            ..|.|
T Consensus       122 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t  201 (291)
T d1s70b_         122 AEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGT  201 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCC
T ss_pred             hhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCC
Confidence            999999887654443                                                            35788


Q ss_pred             hhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         382 PLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       382 PLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      |||+|+..|+.+++++|+++|++++.++..|.|++++|+   ..|+.++|++|+++|++++.+|..|.|||+.+.
T Consensus       202 ~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~---~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~  273 (291)
T d1s70b_         202 ALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAA---HWGKEEACRILVENLCDMEAVNKVGQTAFDVAD  273 (291)
T ss_dssp             HHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCC
T ss_pred             hhhHHHHcCChhhhcccccceecccccccCCCCHHHHHH---HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            999999999999999999999999999999999999887   889999999999999999999999999987653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.4e-22  Score=194.02  Aligned_cols=183  Identities=19%  Similarity=0.083  Sum_probs=148.3

Q ss_pred             cCCCCchhHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhh
Q psy7683         308 CVSFDPLALLLDASLEGELELVMKTARLVKD---PSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLH  384 (514)
Q Consensus       308 ~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad---~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh  384 (514)
                      ..+.+|.|+||+||..|+.++|++|+++|++   ++.+|..|+||||+||..|+.++|++|+++|++++.+|.+|+||||
T Consensus         4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL~   83 (255)
T d1oy3d_           4 YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALH   83 (255)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHH
T ss_pred             cCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhhh
Confidence            4567899999999999999999999999988   6678889999999999999999999999999999999999999999


Q ss_pred             hHhhcCchHHHHHHHhcCc-----------------------------------------------ccccccCCCCchhh
Q psy7683         385 CAASCNNLAMVRFLVEHGA-----------------------------------------------CIFATTHSDHETAA  417 (514)
Q Consensus       385 ~Aa~~g~~eivklLL~~GA-----------------------------------------------din~~d~~g~t~l~  417 (514)
                      +|+..++.+++++|++.+.                                               +++.++..|.|+++
T Consensus        84 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh  163 (255)
T d1oy3d_          84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (255)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             hhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccccc
Confidence            9999999999999976432                                               23446777889988


Q ss_pred             hhhhhhhcCchhhHHHHHhhhhhcccc-cccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCc
Q psy7683         418 VKCEEDEEGFEGCSEFLYSVQEKLGIL-NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYV  496 (514)
Q Consensus       418 ~aa~a~~~g~~~~v~lLl~~GAd~~i~-d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~  496 (514)
                      .++   ..|+.+++++|++.+++.... +..|.|+|+.+......+       ++.+|.+.+..   .   ...+..|..
T Consensus       164 ~A~---~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~-------~v~~Ll~~gad---i---n~~d~~g~t  227 (255)
T d1oy3d_         164 VAV---IHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAAS-------VLELLLKAGAD---P---TARMYGGRT  227 (255)
T ss_dssp             HHH---HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH-------HHHHHHHTTCC---T---TCCCTTSCC
T ss_pred             ccc---cccccccccchhcccccccccccccccccccccccccHHH-------HHHHHHHCCCC---C---CCCCCCCCC
Confidence            887   789999999999999998865 567889988665444333       23333332110   1   234667999


Q ss_pred             hhhhhhcCCC
Q psy7683         497 PRNLLGLYPR  506 (514)
Q Consensus       497 P~~~l~~~~~  506 (514)
                      |.+++...++
T Consensus       228 ~L~~A~~~~~  237 (255)
T d1oy3d_         228 PLGSALLRPN  237 (255)
T ss_dssp             HHHHHHTSSC
T ss_pred             HHHHHHHCCC
Confidence            9998776654

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.1e-21  Score=186.18  Aligned_cols=146  Identities=21%  Similarity=0.302  Sum_probs=133.7

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      +...+..+.++.+++.|.  ..+..+..|.||||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++
T Consensus        77 ~~~~~~~~i~~~Ll~~~~--d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~  154 (223)
T d1uoha_          77 AASAGRDEIVKALLGKGA--QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHI  154 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTC--CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             cccccccchhHHHhccCc--eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhh
Confidence            345677889999999883  234556789999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      |+..|++++.+|.+|+||||+|+..|+.++|++||++||+++.+|..|+||+++|    ..|+.+++++|++
T Consensus       155 L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A----~~~~~~i~~~Ll~  222 (223)
T d1uoha_         155 LLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA----KGGLGLILKRMVE  222 (223)
T ss_dssp             HHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC----CTTHHHHHHHHHC
T ss_pred             hccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH----HCCCHHHHhcccC
Confidence            9999999999999999999999999999999999999999999999999998765    4589999999975

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=9.9e-22  Score=180.24  Aligned_cols=77  Identities=23%  Similarity=0.217  Sum_probs=71.0

Q ss_pred             CCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhc
Q psy7683         378 DGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEA  457 (514)
Q Consensus       378 ~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~  457 (514)
                      .|.++|++|+..+...++++++++|.+++.++..|.++++.++   ..|+.+++++|+++|++++.+|..|.+||+.+..
T Consensus       143 ~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~---~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~  219 (228)
T d1k1aa_         143 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSAS---GRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS  219 (228)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH---HHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSS
T ss_pred             chhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHH---HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHh
Confidence            4778899999999999999999999999999999999999887   7899999999999999999999999999986543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=9.2e-22  Score=185.26  Aligned_cols=168  Identities=18%  Similarity=0.174  Sum_probs=136.8

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCC---CCCCCCcHHH----------
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSA---ANDEGITALH----------  351 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~---~d~~G~TpLh----------  351 (514)
                      ++.+|+++.++.+|+.+.. .....+.+|.||||+|+..|+.++|++|+++|++++.   .+..|.+++|          
T Consensus         7 A~~~g~~~~v~~Ll~~~~~-~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (229)
T d1ixva_           7 ACMENEFFKVQELLHSKPS-LLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEV   85 (229)
T ss_dssp             HHHHTCHHHHHHHHHHCGG-GTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHcCCHHHHHHHHHcCCC-cccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccc
Confidence            5567788888888876532 2344567888888888888888888888888887653   2334444444          


Q ss_pred             -------------------------HHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcC-ccc
Q psy7683         352 -------------------------NAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHG-ACI  405 (514)
Q Consensus       352 -------------------------~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~G-Adi  405 (514)
                                               +++..++.+++++|+..|.+.+.+|..|+||||+|+..|+.+++++|+++| .++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~i  165 (229)
T d1ixva_          86 VKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAV  165 (229)
T ss_dssp             HHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCS
T ss_pred             ccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccc
Confidence                                     455556777888888888888889999999999999999999999999997 688


Q ss_pred             ccccCCCCchhhhhhhhhhcCchhhHHHHHh-hhhhcccccccchhhhhhhh
Q psy7683         406 FATTHSDHETAAVKCEEDEEGFEGCSEFLYS-VQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       406 n~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~-~GAd~~i~d~~g~taL~d~~  456 (514)
                      +.+|..|.|++++++   ..|+.+++++|++ .|++++++|..|.++|..+.
T Consensus       166 n~~d~~g~TpLh~A~---~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~  214 (229)
T d1ixva_         166 NWQDKQGWTPLFHAL---AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL  214 (229)
T ss_dssp             CCCCTTSCCHHHHHH---HTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS
T ss_pred             cccccccCCchhhhc---ccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh
Confidence            999999999999888   7899999999996 69999999999999997554

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=3.4e-21  Score=174.37  Aligned_cols=126  Identities=22%  Similarity=0.239  Sum_probs=101.3

Q ss_pred             chhHHHHHHHcCCHHHHHHHHHcCCCCCCC------CCCCCcHHHHHHHc---CChhHHHHHHhhCCCCcccCCCCCchh
Q psy7683         313 PLALLLDASLEGELELVMKTARLVKDPSAA------NDEGITALHNAICA---GHFDIVRFLVQFGCDVNAQDSDGWMPL  383 (514)
Q Consensus       313 g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~------d~~G~TpLh~Aa~~---g~~eiVklLL~~Gadvn~~D~~G~TPL  383 (514)
                      .++.|+.|+..+++..+..++..|+|++..      +..|+||||+|+..   |+.++|++|+++|+++|.+|..|+|||
T Consensus         6 ~l~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpL   85 (154)
T d1dcqa1           6 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccc
Confidence            456677788888888888888888776654      56688888888864   567888888888888888888888888


Q ss_pred             hhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhc
Q psy7683         384 HCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKL  441 (514)
Q Consensus       384 h~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~  441 (514)
                      |+||..|+.+++++|+++|++++.+|..|.||+++++   ..|+.+++++|++.++..
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~---~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK---RLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHHHHH---HcCCHHHHHHHHHhCCCC
Confidence            8888888888888888888888888888888888776   778888888888877543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.7e-21  Score=173.23  Aligned_cols=148  Identities=22%  Similarity=0.302  Sum_probs=92.6

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+++.++.+++.|..  .+..+..|.||||+|+ .|+.+++++|+++|++++.++..|.++|++++..++.+++++
T Consensus         8 Aa~~g~~~~v~~Ll~~g~d--~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~   84 (156)
T d1ihba_           8 AAARGDLEQLTSLLQNNVN--VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQT   84 (156)
T ss_dssp             HHHHTCHHHHHHHTTSCCC--TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCC--cCccCCcccccccccc-cccccccccccccccccccccccCcccccccccccccccccc
Confidence            4555666666666666532  2233455666666554 566666666666666666666666666666666666666666


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCc-ccccccCCCCchhhhhhhhhhcCchhhHHHHHhhh
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGA-CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ  438 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GA-din~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~G  438 (514)
                      |++++.+++..|..|.++||+|+..++.+++++|+++|+ +++.+|..|.|++++++   ..|+.+++++|+++|
T Consensus        85 l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~---~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_          85 LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR---LYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHH---HcCCHHHHHHHHhcC
Confidence            666666666666666666666666666666666666654 56666666666666555   556666666666654

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.84  E-value=1.1e-21  Score=189.16  Aligned_cols=172  Identities=20%  Similarity=0.254  Sum_probs=136.3

Q ss_pred             ccCcccHHHHHHH--------HHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc
Q psy7683         285 DSNNQEIAEIKSA--------LKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICA  356 (514)
Q Consensus       285 ~~~~g~i~~ik~l--------L~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~  356 (514)
                      ++..|..+.++.+        ++.|.  ..+..+..|.||||+|+..|+.++|++|+++|++++.+|.+|.|+||+|+..
T Consensus        40 A~~~g~~~~v~~Ll~~~~~~~l~~Ga--dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~  117 (277)
T d2fo1e1          40 IASNSSAEKSEDLIVHEAKECIAAGA--DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN  117 (277)
T ss_dssp             HHCTTCCSCCTTHHHHHHHHHHHTCC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHhcchhHHHHcCC--CccccCCCCCeeeccccccccccccccccccccccccccccccccccchhhh
Confidence            4555666655544        44442  2334567889999999999999999999999999998888899999999999


Q ss_pred             CChhHHHHHHhhCC---C--------------------------------------------CcccCCCCCchhhhHhhc
Q psy7683         357 GHFDIVRFLVQFGC---D--------------------------------------------VNAQDSDGWMPLHCAASC  389 (514)
Q Consensus       357 g~~eiVklLL~~Ga---d--------------------------------------------vn~~D~~G~TPLh~Aa~~  389 (514)
                      ++.+++++++..+.   .                                            .+..+..|+|+||+++..
T Consensus       118 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~  197 (277)
T d2fo1e1         118 RDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV  197 (277)
T ss_dssp             TCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSS
T ss_pred             cchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcccccccc
Confidence            98888887754320   1                                            223344688999999999


Q ss_pred             CchHHHHHHH-hcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhccccc
Q psy7683         390 NNLAMVRFLV-EHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTD  461 (514)
Q Consensus       390 g~~eivklLL-~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~  461 (514)
                      ++.+++++++ ..|.+++..|..|.|+++.|+   ..|+.+++++|+++|++++.+|..|.++|+.+......
T Consensus       198 ~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~---~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~  267 (277)
T d2fo1e1         198 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAA---QEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHH  267 (277)
T ss_dssp             CCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHH---HHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCH
T ss_pred             ccccccccccccccccccccCCCCCCHHHHHH---HcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCH
Confidence            9999998755 668899999999999999887   78999999999999999999999999999877655543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.9e-21  Score=170.84  Aligned_cols=143  Identities=23%  Similarity=0.216  Sum_probs=133.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHH
Q psy7683         315 ALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAM  394 (514)
Q Consensus       315 t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~ei  394 (514)
                      ++||+||..|+.++|++|+++|+|++.+|.+|+||||+|+ .|+.+++++|+++|++++..+..|.++|++++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCccccccccccccccc
Confidence            7899999999999999999999999999999999999886 789999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhh-hcccccccchhhhhhhhccccc
Q psy7683         395 VRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQE-KLGILNNGAVYALYDYEANNTD  461 (514)
Q Consensus       395 vklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GA-d~~i~d~~g~taL~d~~~~~~~  461 (514)
                      +++|++++.+++..+..|.++++.++   ..++.+++++|+++|+ +.+.+|..|.|+|+.+......
T Consensus        82 ~~~l~~~~~~~~~~~~~~~~~l~~a~---~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_          82 LQTLLEFQADVNIEDNEGNLPLHLAA---KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cccccccccccccccccccccccccc---ccccccccccccccccccccccCCCCCCHHHHHHHcCCH
Confidence            99999999999999999999998877   7899999999999987 8899999999999876654443

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.84  E-value=3.7e-21  Score=187.59  Aligned_cols=202  Identities=26%  Similarity=0.362  Sum_probs=157.2

Q ss_pred             ccHHHHHHHHHcCCCCC-------CccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhH
Q psy7683         289 QEIAEIKSALKSGKLGK-------KRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDI  361 (514)
Q Consensus       289 g~i~~ik~lL~~g~~~~-------~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~ei  361 (514)
                      ...+.++.++.......       .....+.+.|+||.||..|++++|++||++|+|+|.+|.+|+||||+|+..|+.++
T Consensus         9 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~ei   88 (291)
T d1s70b_           9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM   88 (291)
T ss_dssp             HHHHHHHHHHHTTTSSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHH
T ss_pred             hhHHHHHHHHhCcccccCchhhccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCcee
Confidence            34556666665542211       11223557799999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhh---------------------
Q psy7683         362 VRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKC---------------------  420 (514)
Q Consensus       362 VklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa---------------------  420 (514)
                      |++|+++|++.+..+..+.+|||+|+..++.+++++|+++|+..+..+..+.+++.+++                     
T Consensus        89 v~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~  168 (291)
T d1s70b_          89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEA  168 (291)
T ss_dssp             HHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHH
T ss_pred             eeeecccccccccccccccccccccccccccchhhcccccCcccccccccCccccccccccccchhcccccccccccccc
Confidence            99999999999999999999999999999999999999999888776665555543221                     


Q ss_pred             ------------------------------------hhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccccccc
Q psy7683         421 ------------------------------------EEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELS  464 (514)
Q Consensus       421 ------------------------------------~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~eL~  464 (514)
                                                          .+...|+.+++++|++.|++++..+..|.++|+.+......+  
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~--  246 (291)
T d1s70b_         169 ARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEE--  246 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHH--
T ss_pred             ccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHH--
Confidence                                                123678899999999999999999999999998777554443  


Q ss_pred             cccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         465 FKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       465 ~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                           ++.+|.+.+..      -...+..|..|.+++++
T Consensus       247 -----iv~lLl~~Gad------v~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         247 -----ACRILVENLCD------MEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             -----HHHHHHHTTCC------TTCCCTTSCCTTTSCCS
T ss_pred             -----HHHHHHHCCCC------CCCcCCCCCCHHHHHHH
Confidence                 33344332110      12346688889887653

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=7.6e-21  Score=168.41  Aligned_cols=144  Identities=24%  Similarity=0.258  Sum_probs=111.7

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..|+++.++.+|+.|....   .+..|.||||+|+..++.++++.++.........+..+.+++++++...+.+++++
T Consensus         9 Aa~~g~~~~v~~LL~~ga~~~---~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (153)
T d1awcb_           9 AARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV   85 (153)
T ss_dssp             HHHHTCHHHHHHHHHHTCCCC---CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHcCCCcc---cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeec
Confidence            566777888888888775332   34667788888888888888888777776666666777778888888888888888


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHH
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL  434 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lL  434 (514)
                      |+.+|++++.+|.+|+||||+||..|+.++|++|+++|++++..|..|.||+++++   ..|+.+++++|
T Consensus        86 l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~---~~g~~eiv~lL  152 (153)
T d1awcb_          86 LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI---DNGNEDLAEIL  152 (153)
T ss_dssp             HHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHH
T ss_pred             ccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHH---HcCCHHHHHhC
Confidence            88888888888888888888888888888888888888888888888888887777   77788888766

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=7.4e-21  Score=170.33  Aligned_cols=143  Identities=25%  Similarity=0.284  Sum_probs=131.4

Q ss_pred             hHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchH
Q psy7683         315 ALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLA  393 (514)
Q Consensus       315 t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~e  393 (514)
                      ..|+.||..|++++|+.||+. +++++.+|..|+||||+|+ .|+.++|++|+++|++++..+..|.+||++++..++.+
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLD   82 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccccccccccccccccccccccc
Confidence            358999999999999999986 7899999999999999987 58899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccccc
Q psy7683         394 MVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       394 ivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~e  462 (514)
                      ++++++++|++++.++..|.++++.+|   ..|+.+++++|+ .|++++.+|..|.|+|+.+......+
T Consensus        83 ~~~~~l~~~~~~n~~~~~~~t~L~~A~---~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~  147 (156)
T d1bd8a_          83 TLKVLVEHGADVNVPDGTGALPIHLAV---QEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQD  147 (156)
T ss_dssp             HHHHHHHTTCCSCCCCTTSCCHHHHHH---HHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHH
T ss_pred             ccccccccccccccccCCCCeeecccc---cccccccccccc-ccccccccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999999887   789999999887 68999999999999998776555443

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.3e-20  Score=166.79  Aligned_cols=145  Identities=22%  Similarity=0.186  Sum_probs=135.4

Q ss_pred             hhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchH
Q psy7683         314 LALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLA  393 (514)
Q Consensus       314 ~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~e  393 (514)
                      -|+||.||+.|+.++|++||++|++++ .|..|+||||+|+..++.+++++++.........+..+.+++++++...+.+
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            489999999999999999999999887 6889999999999999999999999998888888889999999999999999


Q ss_pred             HHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcccccc
Q psy7683         394 MVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDE  462 (514)
Q Consensus       394 ivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~e  462 (514)
                      ++++|+.+|++.+.++..|.|+++.+|   ..|+.+++++|+++|++++..|..|.|+++.+......+
T Consensus        82 ~~~~l~~~~~~~~~~~~~g~T~L~~A~---~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~e  147 (153)
T d1awcb_          82 IVEVLLKHGADVNAKDMLKMTALHWAT---EHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNED  147 (153)
T ss_dssp             HHHHHHTTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             eeecccccCCccccccccCchHHHhhh---hcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999999887   889999999999999999999999999998777655444

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.2e-20  Score=170.88  Aligned_cols=127  Identities=16%  Similarity=0.085  Sum_probs=110.3

Q ss_pred             hcCCcccCcccHHHHHHHHHcCCCCC----CccCCCCchhHHHHHHHc---CCHHHHHHHHHcCCCCCCCCCCCCcHHHH
Q psy7683         280 NSSPSDSNNQEIAEIKSALKSGKLGK----KRCVSFDPLALLLDASLE---GELELVMKTARLVKDPSAANDEGITALHN  352 (514)
Q Consensus       280 ~~~~~~~~~g~i~~ik~lL~~g~~~~----~~~~~~~g~t~Lh~Aa~~---g~~~~V~~LL~~gad~n~~d~~G~TpLh~  352 (514)
                      ..+.++...+++..++.++.+|....    ....+..|.|+||+|+..   |..++|++|+++|++++.+|..|+||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            33445677889999999998873221    222356789999999974   67899999999999999999999999999


Q ss_pred             HHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccc
Q psy7683         353 AICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIF  406 (514)
Q Consensus       353 Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin  406 (514)
                      ||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.++...
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~~  141 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRF  141 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999999999999999877543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.82  E-value=6.2e-21  Score=176.96  Aligned_cols=167  Identities=22%  Similarity=0.151  Sum_probs=145.6

Q ss_pred             HHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHc--------------
Q psy7683         291 IAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICA--------------  356 (514)
Q Consensus       291 i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~--------------  356 (514)
                      .+.|+.||+.|.. .....+.+|.|+||+||..|+.+++++|++.|++++.++..+.+++++++..              
T Consensus         2 ~~~v~~Ll~~g~d-in~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAE-LNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCC-cCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhccccccccccccccccccccccccccccccccccc
Confidence            3678888988842 1122356899999999999999999999999999999999999998888765              


Q ss_pred             --------------------CChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchh
Q psy7683         357 --------------------GHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETA  416 (514)
Q Consensus       357 --------------------g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l  416 (514)
                                          ......++|+..|++++..+..|+|||++++..+..+++++|+.++++++..|..|.|++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL  160 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPL  160 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccccccccccccccccc
Confidence                                234567778888999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhccccc
Q psy7683         417 AVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTD  461 (514)
Q Consensus       417 ~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~~~~  461 (514)
                      ++++   ..|+.+++++|+++|+++++.|..|.+||+.+......
T Consensus       161 ~~A~---~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~  202 (209)
T d1ot8a_         161 FLAA---REGSYEASKALLDNFANREITDHMDRLPRDVASERLHH  202 (209)
T ss_dssp             HHHH---HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             chhc---cccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCH
Confidence            9888   78999999999999999999999999999876655443

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=6.9e-21  Score=164.00  Aligned_cols=106  Identities=28%  Similarity=0.328  Sum_probs=101.8

Q ss_pred             CcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcC
Q psy7683         347 ITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEG  426 (514)
Q Consensus       347 ~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g  426 (514)
                      .|||+|||..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|.|++++++   ..|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~---~~~   79 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV---YEG   79 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHH---TTT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhh---hcC
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999887   889


Q ss_pred             chhhHHHHHhhhhhcccccccchhhhhhh
Q psy7683         427 FEGCSEFLYSVQEKLGILNNGAVYALYDY  455 (514)
Q Consensus       427 ~~~~v~lLl~~GAd~~i~d~~g~taL~d~  455 (514)
                      +.+++++|+++|++++..|..|.++++.+
T Consensus        80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          80 HVSCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             CCHHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             chhhhhhhhcccccceeeCCCCCCHHHHH
Confidence            99999999999999999999999998654

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.3e-20  Score=174.12  Aligned_cols=154  Identities=18%  Similarity=0.085  Sum_probs=136.2

Q ss_pred             CccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCC------cccCCCC
Q psy7683         306 KRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDV------NAQDSDG  379 (514)
Q Consensus       306 ~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadv------n~~D~~G  379 (514)
                      .+..+..|.||||+||..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+..+.+.      +.....|
T Consensus        32 in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  111 (221)
T d1iknd_          32 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNG  111 (221)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTC
T ss_pred             cccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence            3445678999999999999999999999999999999999999999999999999999999887653      3345578


Q ss_pred             CchhhhHhhcCchHHHHHHHhcCcccccccC-CCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhhcc
Q psy7683         380 WMPLHCAASCNNLAMVRFLVEHGACIFATTH-SDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEAN  458 (514)
Q Consensus       380 ~TPLh~Aa~~g~~eivklLL~~GAdin~~d~-~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~~~  458 (514)
                      .||||+|+..++.+++++|+..|+.++..+. .|.|+++.++   ..|+.+++++|+++|+|++.+|..|.+|++.+...
T Consensus       112 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~---~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~  188 (221)
T d1iknd_         112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV---DLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGR  188 (221)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH---HTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTS
T ss_pred             chhhhHHhhcCChhheeeecccCcccccccccCCCCcccccc---ccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHC
Confidence            9999999999999999999999999988765 5788888777   88999999999999999999999999999876655


Q ss_pred             cccc
Q psy7683         459 NTDE  462 (514)
Q Consensus       459 ~~~e  462 (514)
                      ...+
T Consensus       189 ~~~~  192 (221)
T d1iknd_         189 PSTR  192 (221)
T ss_dssp             SCHH
T ss_pred             CCHH
Confidence            5444

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1.7e-19  Score=169.43  Aligned_cols=149  Identities=19%  Similarity=0.164  Sum_probs=132.4

Q ss_pred             cCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHH
Q psy7683         286 SNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFL  365 (514)
Q Consensus       286 ~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklL  365 (514)
                      ...+..+.++.++..+........+..+.++|+.++..++.++++.|++.|.+.+..|..|+|+||+|+..|+.+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~L  157 (229)
T d1ixva_          78 CSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL  157 (229)
T ss_dssp             HHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccc
Confidence            34556677777777775555555667789999999999999999999999999999999999999999999999999999


Q ss_pred             HhhC-CCCcccCCCCCchhhhHhhcCchHHHHHHHh-cCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhh
Q psy7683         366 VQFG-CDVNAQDSDGWMPLHCAASCNNLAMVRFLVE-HGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEK  440 (514)
Q Consensus       366 L~~G-advn~~D~~G~TPLh~Aa~~g~~eivklLL~-~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd  440 (514)
                      ++.| .+++.+|.+|+||||+|+..|+.++|++||+ +|++++.+|..|.|++++++      ..+++++|++.|+|
T Consensus       158 l~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~------~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         158 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL------NEQVKKFFLNNVVD  228 (229)
T ss_dssp             HTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCS------CHHHHHHHHHHCCC
T ss_pred             cccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHh------hHHHHHHHHHcCCC
Confidence            9987 6889999999999999999999999999996 59999999999999999876      24799999999986

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.3e-19  Score=184.02  Aligned_cols=141  Identities=23%  Similarity=0.309  Sum_probs=75.0

Q ss_pred             CchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhhcCc
Q psy7683         312 DPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNN  391 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~  391 (514)
                      .+.++||.|+..++.+++++++..+...+..+..|.||||+|+..++.+++++|+++|++++..+..+.||||+|+..++
T Consensus       230 ~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~  309 (408)
T d1n11a_         230 QGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN  309 (408)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred             CCCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCc
Confidence            34455555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhh
Q psy7683         392 LAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDY  455 (514)
Q Consensus       392 ~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~  455 (514)
                      .+++++|++.|++++.+|..|.|++++|+   ..|+.++|++|+++||+++++|..|.++|+.+
T Consensus       310 ~~~~~~ll~~g~~in~~d~~G~T~Lh~A~---~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A  370 (408)
T d1n11a_         310 IKLVKFLLQHQADVNAKTKLGYSPLHQAA---QQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA  370 (408)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHH
T ss_pred             ceeeeeeccccccccccCCCCCCHHHHHH---HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            55555555555555555555555555444   44555555555555555555555555555433

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6.7e-20  Score=181.98  Aligned_cols=145  Identities=14%  Similarity=0.043  Sum_probs=117.5

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCCh---hHHHHHHhh-CCCCcccCCCCCchhh
Q psy7683         309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHF---DIVRFLVQF-GCDVNAQDSDGWMPLH  384 (514)
Q Consensus       309 ~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~---eiVklLL~~-Gadvn~~D~~G~TPLh  384 (514)
                      .|..|.|+||+||..|++++|++||++|++++.+|..|+||||+||..++.   ..+..|++. +.+++..|..|+||||
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            367899999999999999999999999999999999999999999987752   223333332 3457788999999999


Q ss_pred             hHhhcCc----hH--------HHHHHHhcCcc-------------------------------------cccccCCCCch
Q psy7683         385 CAASCNN----LA--------MVRFLVEHGAC-------------------------------------IFATTHSDHET  415 (514)
Q Consensus       385 ~Aa~~g~----~e--------ivklLL~~GAd-------------------------------------in~~d~~g~t~  415 (514)
                      +++..+.    ..        ++.+|+..+..                                     +|.+|..|+|+
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence            8886443    22        23344444332                                     67889999999


Q ss_pred             hhhhhhhhhcCchhhHHHHHhhhhhcccccccchhhhhhhh
Q psy7683         416 AAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYE  456 (514)
Q Consensus       416 l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d~~g~taL~d~~  456 (514)
                      +++|+   ..|+.++|++|+++||++++.|..|.++|..+.
T Consensus       263 Lh~A~---~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAA---RLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHH---HHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHH---HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99888   899999999999999999999999999997553

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.80  E-value=3.1e-19  Score=171.76  Aligned_cols=147  Identities=21%  Similarity=0.295  Sum_probs=126.0

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCC---C-----------------------
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVK---D-----------------------  338 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~ga---d-----------------------  338 (514)
                      ++..|+.+.++.||+.|..  .+..+..|.++|++|+..++.+++++++..+.   .                       
T Consensus        81 A~~~g~~~iv~~Ll~~Gad--~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (277)
T d2fo1e1          81 AVLARRRRLVAYLMKAGAD--PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQ  158 (277)
T ss_dssp             HHHHTCHHHHHHHHHTTCC--SCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTH
T ss_pred             ccccccccccccccccccc--cccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccc
Confidence            6678899999999999843  33445789999999999999988887754310   0                       


Q ss_pred             ---------------------CCCCCCCCCcHHHHHHHcCChhHHHHHH-hhCCCCcccCCCCCchhhhHhhcCchHHHH
Q psy7683         339 ---------------------PSAANDEGITALHNAICAGHFDIVRFLV-QFGCDVNAQDSDGWMPLHCAASCNNLAMVR  396 (514)
Q Consensus       339 ---------------------~n~~d~~G~TpLh~Aa~~g~~eiVklLL-~~Gadvn~~D~~G~TPLh~Aa~~g~~eivk  396 (514)
                                           .+..+..|+|+||+++..++.+++++++ ..|.+++.+|..|+||||+|+..|+.++|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~  238 (277)
T d2fo1e1         159 VASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVM  238 (277)
T ss_dssp             HHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             cccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence                                 1234567899999999999999998765 578999999999999999999999999999


Q ss_pred             HHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh
Q psy7683         397 FLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS  436 (514)
Q Consensus       397 lLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~  436 (514)
                      +|+++|++++.+|..|.|++++|+   ..|+.++|++|++
T Consensus       239 ~Ll~~gadin~~d~~G~T~L~~A~---~~~~~~iv~lL~~  275 (277)
T d2fo1e1         239 YLIQQGASVEAVDATDHTARQLAQ---ANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHTTCCSSCCCSSSCCHHHHHH---HTTCHHHHHHHHT
T ss_pred             HHHHCcCCCCCcCCCCCCHHHHHH---HcCCHHHHHHHHH
Confidence            999999999999999999999988   8899999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=3.6e-19  Score=171.98  Aligned_cols=157  Identities=21%  Similarity=0.226  Sum_probs=133.2

Q ss_pred             cCcccHHHHHHHHHcCCCCC--------CccCCCCchhHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCcHHHHHHHc
Q psy7683         286 SNNQEIAEIKSALKSGKLGK--------KRCVSFDPLALLLDASLEGELELVMKTARL-VKDPSAANDEGITALHNAICA  356 (514)
Q Consensus       286 ~~~g~i~~ik~lL~~g~~~~--------~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~-gad~n~~d~~G~TpLh~Aa~~  356 (514)
                      ...+....+..++.......        .......|.|+||+|+..|+.+++++|+++ |++++..+..|.++++.+...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~  192 (285)
T d1wdya_         113 AVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLS  192 (285)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHC
T ss_pred             HHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCccccccccc
Confidence            34556666777766542211        112245689999999999999999999976 899999999999988877655


Q ss_pred             CC----hhHHHHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhc-CcccccccCCCCchhhhhhhhhhcCchhhH
Q psy7683         357 GH----FDIVRFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEH-GACIFATTHSDHETAAVKCEEDEEGFEGCS  431 (514)
Q Consensus       357 g~----~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~-GAdin~~d~~g~t~l~~aa~a~~~g~~~~v  431 (514)
                      +.    .+++++|+++|++++.+|..|.||||+|+..|+.++|++||++ |++++.+|.+|.||+++|+   ..|+.+++
T Consensus       193 ~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~---~~~~~eiv  269 (285)
T d1wdya_         193 SDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV---ELKLKKIA  269 (285)
T ss_dssp             SCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH---HTTCHHHH
T ss_pred             ccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH---HcCCHHHH
Confidence            43    4689999999999999999999999999999999999999975 9999999999999999887   88999999


Q ss_pred             HHHHhhhhhccccc
Q psy7683         432 EFLYSVQEKLGILN  445 (514)
Q Consensus       432 ~lLl~~GAd~~i~d  445 (514)
                      ++|+++||+++..|
T Consensus       270 ~~Ll~~GAd~n~~d  283 (285)
T d1wdya_         270 ELLCKRGASTDCGD  283 (285)
T ss_dssp             HHHHHHSSCSCCSS
T ss_pred             HHHHHCCCCCCccc
Confidence            99999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.79  E-value=4.4e-21  Score=195.03  Aligned_cols=134  Identities=13%  Similarity=0.084  Sum_probs=111.5

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHH---HHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccC--CCCCchh
Q psy7683         309 VSFDPLALLLDASLEGELELVMK---TARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQD--SDGWMPL  383 (514)
Q Consensus       309 ~~~~g~t~Lh~Aa~~g~~~~V~~---LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D--~~G~TPL  383 (514)
                      .+..|.|+||+||..|+.+++++   |++.|+++|.+|.+|+||||+||..||.++|++|+++|++++..+  .+|+|||
T Consensus        86 ~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L  165 (346)
T d2ajaa1          86 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAF  165 (346)
T ss_dssp             HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHH
T ss_pred             ccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChh
Confidence            35688999999999999877665   789999999999999999999999999999999999999999876  4699999


Q ss_pred             hhHhhcCchHHHHHHHhcCccccccc--CCCCchhhhhhhhhhcCchhhHHHHHhhhhhcccc
Q psy7683         384 HCAASCNNLAMVRFLVEHGACIFATT--HSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGIL  444 (514)
Q Consensus       384 h~Aa~~g~~eivklLL~~GAdin~~d--~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~  444 (514)
                      |+||..|+.++|++|+++|++....+  ..++++++++|  ...|+.+++++|++.|++++..
T Consensus       166 ~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A--~~~g~~~iv~~Ll~~ga~~~~~  226 (346)
T d2ajaa1         166 RLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAA--VGRGHHNVINFLLDCPVMLAYA  226 (346)
T ss_dssp             HHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHH--STTCCHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHH--hhcCHHHHHHHHHhCCCCcchH
Confidence            99999999999999999998764332  23455665544  3789999999999999987643

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.6e-20  Score=175.61  Aligned_cols=178  Identities=24%  Similarity=0.212  Sum_probs=139.4

Q ss_pred             CchhHHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHh
Q psy7683         312 DPLALLLDASLEGEL----ELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAA  387 (514)
Q Consensus       312 ~g~t~Lh~Aa~~g~~----~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa  387 (514)
                      +|.|+||+|+..|+.    ++++++...|+++|.+|.+|+||||+||..|+.+++++|+++|++++.+|..|.||||+|+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            588999999999985    5566677789999999999999999999999999999999999999999999999999999


Q ss_pred             hcCchHHHHHHHhcCccc------ccccCCCCchhhhhhhhhhcCchhhHHHHHhhhhhccccc-ccchhhhhhhhcccc
Q psy7683         388 SCNNLAMVRFLVEHGACI------FATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILN-NGAVYALYDYEANNT  460 (514)
Q Consensus       388 ~~g~~eivklLL~~GAdi------n~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~GAd~~i~d-~~g~taL~d~~~~~~  460 (514)
                      ..++.+++++|++.+.+.      ......|.++++.++   ..++.+++++|+..|+.++..+ ..|.++|+.+.....
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~---~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~  157 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS---IHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQN  157 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH---HTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTC
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHh---hcCChhheeeecccCcccccccccCCCCcccccccccc
Confidence            999999999999987653      334445678887776   7899999999999999998766 468899987776555


Q ss_pred             cccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         461 DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       461 ~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .++       +..|.+.+.    -  ....+..|+.|.+++...+
T Consensus       158 ~~~-------v~~Ll~~ga----d--~~~~~~~G~tpl~~A~~~~  189 (221)
T d1iknd_         158 PDL-------VSLLLKCGA----D--VNRVTYQGYSPYQLTWGRP  189 (221)
T ss_dssp             HHH-------HHHHHTTTC----C--SCCCCTTCCCGGGGCTTSS
T ss_pred             HHH-------HHHHHhcCC----c--ccccCCCCCCHHHHHHHCC
Confidence            442       233322110    0  1234678999998876544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.9e-19  Score=179.02  Aligned_cols=148  Identities=23%  Similarity=0.254  Sum_probs=132.7

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHH
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRF  364 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVkl  364 (514)
                      ++..+..+.++.++..+..  ....+..|.++|+.|+..++.+++++|++.|++++..+..+.||||+|+..++.+++++
T Consensus       238 a~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~  315 (408)
T d1n11a_         238 AAQEGHAEMVALLLSKQAN--GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF  315 (408)
T ss_dssp             HHHTTCHHHHHHHHTTTCC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHH
T ss_pred             HHHhCcHhHhhhhhccccc--cccccCCCCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeee
Confidence            4556677777777776532  33345678999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHhh
Q psy7683         365 LVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSV  437 (514)
Q Consensus       365 LL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~~  437 (514)
                      |++.|+++|.+|.+|+||||+|++.|+.++|++||++||+++.+|..|.|++++|+   ..|+.++|++|...
T Consensus       316 ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~---~~~~~~iv~~L~~~  385 (408)
T d1n11a_         316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAK---RLGYISVTDVLKVV  385 (408)
T ss_dssp             HHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHH---HTTCHHHHHHHHHH
T ss_pred             eccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---HcCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998887   78999999877433

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8e-20  Score=158.67  Aligned_cols=114  Identities=16%  Similarity=0.240  Sum_probs=102.9

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC-cHHHHHHHcCChhHH
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGI-TALHNAICAGHFDIV  362 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~-TpLh~Aa~~g~~eiV  362 (514)
                      .++..|+++.++.+++.|..  .+..+..|.++||+|+ .|+.+++++|+++|++++.++..|. ||||+||..|+.++|
T Consensus         9 ~Aa~~G~~~~v~~Ll~~gad--~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v   85 (125)
T d1bi7b_           9 TAAARGRVEEVRALLEAGAN--PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTL   85 (125)
T ss_dssp             HHHHHTCHHHHHHHHTTTCC--TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHcCCc--cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence            47788999999999998832  3345678899999665 7999999999999999999998876 699999999999999


Q ss_pred             HHHHhhCCCCcccCCCCCchhhhHhhcCchHHHHHHHh
Q psy7683         363 RFLVQFGCDVNAQDSDGWMPLHCAASCNNLAMVRFLVE  400 (514)
Q Consensus       363 klLL~~Gadvn~~D~~G~TPLh~Aa~~g~~eivklLL~  400 (514)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        86 ~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          86 VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-19  Score=159.11  Aligned_cols=119  Identities=19%  Similarity=0.163  Sum_probs=104.7

Q ss_pred             CcccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHH
Q psy7683         283 PSDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIV  362 (514)
Q Consensus       283 ~~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiV  362 (514)
                      ..++..|+++.++.+++.|..  .+..+..|+|+||+||..|+.+++++|++.|++++.+|.+|+||||+||.+|+.++|
T Consensus         6 ~~A~~~G~~~~v~~Ll~~g~d--~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v   83 (130)
T d1ycsb1           6 LDSSLEGEFDLVQRIIYEVDD--PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVC   83 (130)
T ss_dssp             HHHHHHTCHHHHHHHTSTTSS--CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCC--ccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHH
Confidence            346778999999999999843  344567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhCCCCcccCC-CCCchhhhH--hhcCchHHHHHHHhcCc
Q psy7683         363 RFLVQFGCDVNAQDS-DGWMPLHCA--ASCNNLAMVRFLVEHGA  403 (514)
Q Consensus       363 klLL~~Gadvn~~D~-~G~TPLh~A--a~~g~~eivklLL~~GA  403 (514)
                      ++|+++|++++..+. +|.|+++++  +..|+.+++++|+..+.
T Consensus        84 ~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          84 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred             HHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence            999999999998775 578886655  67899999999997654

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.8e-18  Score=158.10  Aligned_cols=143  Identities=20%  Similarity=0.174  Sum_probs=120.2

Q ss_pred             ccCcccHHHHHHHHH----cCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCC------------------
Q psy7683         285 DSNNQEIAEIKSALK----SGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAA------------------  342 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~----~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~------------------  342 (514)
                      ++..|+++.++.+++    .|.  ..+..+..|.||||+|+..|+.++|++|+++|++.+..                  
T Consensus        10 A~~~g~~~~v~~Ll~~~~~~g~--~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~   87 (228)
T d1k1aa_          10 AVVQGNLPAVHRLVNLFQQGGR--ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPT   87 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTC--CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHCCC--CCCccCCCCCccceehhccccccccccccccccccccccccccccccccccccccc
Confidence            566788888887765    332  23445678999999999999999999999998875322                  


Q ss_pred             -----------------------------------------------------CCCCCcHHHHHHHcCChhHHHHHHhhC
Q psy7683         343 -----------------------------------------------------NDEGITALHNAICAGHFDIVRFLVQFG  369 (514)
Q Consensus       343 -----------------------------------------------------d~~G~TpLh~Aa~~g~~eiVklLL~~G  369 (514)
                                                                           +..|.++||+|+..+...++++++++|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~  167 (228)
T d1k1aa_          88 CLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG  167 (228)
T ss_dssp             HHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             chhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhc
Confidence                                                                 234677888888888899999999999


Q ss_pred             CCCcccCCCCCchhhhHhhcCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHH
Q psy7683         370 CDVNAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSE  432 (514)
Q Consensus       370 advn~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~  432 (514)
                      .+++.+|..|.||||+|+..|+.+++++|+++|+|++.+|..|.||+++|+   ..|+.++|+
T Consensus       168 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~---~~~~~divk  227 (228)
T d1k1aa_         168 ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR---SRRVIDILR  227 (228)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCS---SHHHHHHHT
T ss_pred             cccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH---hCCCccccC
Confidence            999999999999999999999999999999999999999999999999887   677777663

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=3.6e-18  Score=164.83  Aligned_cols=171  Identities=21%  Similarity=0.209  Sum_probs=111.4

Q ss_pred             cccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCC----------------------
Q psy7683         284 SDSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSA----------------------  341 (514)
Q Consensus       284 ~~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~----------------------  341 (514)
                      .+..+|+++.|+.||+.|... ....+..|+||||+|+..|+.+++++|++.+.+.+.                      
T Consensus        11 ~Ai~~~~~e~vk~Ll~~G~di-n~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (285)
T d1wdya_          11 KAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLK   89 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCCc-CccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCCccccc
Confidence            367788999999999988332 223345789999999999999999999887664411                      


Q ss_pred             ------------------------------------------------------CCCCCCcHHHHHHHcCChhHHHHHHh
Q psy7683         342 ------------------------------------------------------ANDEGITALHNAICAGHFDIVRFLVQ  367 (514)
Q Consensus       342 ------------------------------------------------------~d~~G~TpLh~Aa~~g~~eiVklLL~  367 (514)
                                                                            .+..|.||||+||.+|+.+++++|++
T Consensus        90 ~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~  169 (285)
T d1wdya_          90 LFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD  169 (285)
T ss_dssp             HHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             hhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHHHHHHh
Confidence                                                                  11235566666666666666666664


Q ss_pred             -hCCCCcccCCCCCchhhhHhh----cCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHHHh-hhhhc
Q psy7683         368 -FGCDVNAQDSDGWMPLHCAAS----CNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFLYS-VQEKL  441 (514)
Q Consensus       368 -~Gadvn~~D~~G~TPLh~Aa~----~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lLl~-~GAd~  441 (514)
                       .|++++..+..|.++++.+..    .+..+++++|+++|++++.++..|.|+++.++   ..|+.+++++|++ .|+++
T Consensus       170 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~---~~~~~~~v~~lL~~~g~di  246 (285)
T d1wdya_         170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV---EKKHLGLVQRLLEQEHIEI  246 (285)
T ss_dssp             TSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHH---HTTCHHHHHHHHHSSSCCT
T ss_pred             ccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhh---hcCcHHHHHHHHHcCCCCC
Confidence             366666666666655554332    22335666666666666666666666666655   5566667766665 36666


Q ss_pred             ccccccchhhhhhhhcc
Q psy7683         442 GILNNGAVYALYDYEAN  458 (514)
Q Consensus       442 ~i~d~~g~taL~d~~~~  458 (514)
                      +.+|..|.|||+.+...
T Consensus       247 n~~d~~G~TpL~~A~~~  263 (285)
T d1wdya_         247 NDTDSDGKTALLLAVEL  263 (285)
T ss_dssp             TCCCTTSCCHHHHHHHT
T ss_pred             cCCCCCCCCHHHHHHHc
Confidence            66666666666644433

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=1e-17  Score=154.91  Aligned_cols=123  Identities=24%  Similarity=0.176  Sum_probs=113.9

Q ss_pred             CCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcHHHHHHHcCChhHHHHHHhhCCCCcccCCCCCchhhhHhh
Q psy7683         309 VSFDPLALLLDASLEGELELVMKTARLVKDPSAANDEGITALHNAICAGHFDIVRFLVQFGCDVNAQDSDGWMPLHCAAS  388 (514)
Q Consensus       309 ~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g~~eiVklLL~~Gadvn~~D~~G~TPLh~Aa~  388 (514)
                      ....+.+..+.+.........+.|+..+++++.++..|+|+||+|+..+..++++.|++++++++..|..|.||||+|+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~  165 (209)
T d1ot8a_          86 RMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAR  165 (209)
T ss_dssp             CCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             ccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhcc
Confidence            33456677777777788888889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCchHHHHHHHhcCcccccccCCCCchhhhhhhhhhcCchhhHHHH
Q psy7683         389 CNNLAMVRFLVEHGACIFATTHSDHETAAVKCEEDEEGFEGCSEFL  434 (514)
Q Consensus       389 ~g~~eivklLL~~GAdin~~d~~g~t~l~~aa~a~~~g~~~~v~lL  434 (514)
                      .|+.++|++||++|||++..|..|.||+++|+   ..|+.++|++|
T Consensus       166 ~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~---~~~~~~iv~lL  208 (209)
T d1ot8a_         166 EGSYEASKALLDNFANREITDHMDRLPRDVAS---ERLHHDIVRLL  208 (209)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH---HTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHH---HcCCHHHHhhc
Confidence            99999999999999999999999999999888   88999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.70  E-value=4.4e-19  Score=180.06  Aligned_cols=122  Identities=14%  Similarity=0.145  Sum_probs=99.2

Q ss_pred             ccCcccHHHHHH---HHHcCCCCCCccCCCCchhHHHHHHHcCCHHHHHHHHHcCCCCCCCC--CCCCcHHHHHHHcCCh
Q psy7683         285 DSNNQEIAEIKS---ALKSGKLGKKRCVSFDPLALLLDASLEGELELVMKTARLVKDPSAAN--DEGITALHNAICAGHF  359 (514)
Q Consensus       285 ~~~~g~i~~ik~---lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~~~V~~LL~~gad~n~~d--~~G~TpLh~Aa~~g~~  359 (514)
                      ++.+|+.+.++.   ++..|.  ..+..+..|+|+||+||..|+.++|++|++.|++++..+  .+|+||||+||..||.
T Consensus        97 Aa~~g~~~~~~~~~~L~~~~~--~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~  174 (346)
T d2ajaa1          97 AAITGCSSALDTLCLLLTSDE--IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHL  174 (346)
T ss_dssp             HHHHCCHHHHHHHTTC--CCS--SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCH
T ss_pred             HHHhCCHHHHHHHHHHHhCCC--cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhH
Confidence            567777665544   556553  234455789999999999999999999999999998876  3599999999999999


Q ss_pred             hHHHHHHhhCCCC---cccCCCCCchhhhHhhcCchHHHHHHHhcCcccccc
Q psy7683         360 DIVRFLVQFGCDV---NAQDSDGWMPLHCAASCNNLAMVRFLVEHGACIFAT  408 (514)
Q Consensus       360 eiVklLL~~Gadv---n~~D~~G~TPLh~Aa~~g~~eivklLL~~GAdin~~  408 (514)
                      ++|++|++.|++.   +..+.+|.||||+|+.+|+.++|++|+++|++++..
T Consensus       175 ~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~  226 (346)
T d2ajaa1         175 HVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYA  226 (346)
T ss_dssp             HHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHH
T ss_pred             HHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchH
Confidence            9999999999865   344566778999999999999999999999887654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.60  E-value=2.9e-16  Score=155.35  Aligned_cols=131  Identities=21%  Similarity=0.142  Sum_probs=103.1

Q ss_pred             ccCcccHHHHHHHHHcCCCCCCccCCCCchhHHHHHHHcCCH-------HHHHHHHHcCCCCCCCCCCCCcHHHHHHHcC
Q psy7683         285 DSNNQEIAEIKSALKSGKLGKKRCVSFDPLALLLDASLEGEL-------ELVMKTARLVKDPSAANDEGITALHNAICAG  357 (514)
Q Consensus       285 ~~~~g~i~~ik~lL~~g~~~~~~~~~~~g~t~Lh~Aa~~g~~-------~~V~~LL~~gad~n~~d~~G~TpLh~Aa~~g  357 (514)
                      ++..|+++.++.||+.|..  ....+..|.||||.||..++.       +++++|.   .+++.+|..|+|+||+++..+
T Consensus       114 Aa~~g~~~~v~~Ll~~gad--~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~lh~~~~~~  188 (301)
T d1sw6a_         114 LTSIANLELVKHLVKHGSN--RLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTILHHIIITS  188 (301)
T ss_dssp             HHHTTCHHHHHHHHHTTCC--TTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHCCCC--CCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCHHHHHHHHh
Confidence            7778999999999999843  345567899999999987652       3344433   345667889999999998755


Q ss_pred             Ch----hH--------HHHHHhhCC-------------------------------------CCcccCCCCCchhhhHhh
Q psy7683         358 HF----DI--------VRFLVQFGC-------------------------------------DVNAQDSDGWMPLHCAAS  388 (514)
Q Consensus       358 ~~----ei--------VklLL~~Ga-------------------------------------dvn~~D~~G~TPLh~Aa~  388 (514)
                      ..    .+        +.+++..+.                                     .+|.+|.+|+||||+||+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~  268 (301)
T d1sw6a_         189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR  268 (301)
T ss_dssp             TSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHH
Confidence            42    22        233433332                                     168899999999999999


Q ss_pred             cCchHHHHHHHhcCcccccccCCCCchhhhhh
Q psy7683         389 CNNLAMVRFLVEHGACIFATTHSDHETAAVKC  420 (514)
Q Consensus       389 ~g~~eivklLL~~GAdin~~d~~g~t~l~~aa  420 (514)
                      .|+.++|++||++||+++.+|..|.||+++++
T Consensus       269 ~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         269 LGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999999875

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=9.6e-12  Score=94.75  Aligned_cols=62  Identities=61%  Similarity=1.349  Sum_probs=56.5

Q ss_pred             ccccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         444 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       444 ~d~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      .|.+.+.|||+|.+++.++|.|++|+++.|+.+.++.+.+||.++.+|+.|+||.+||+.++
T Consensus         2 ~n~g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~P   63 (63)
T d1ycsb2           2 MNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP   63 (63)
T ss_dssp             TGGGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred             CcCCEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeCc
Confidence            45667889999999999999999999999998877767789999999999999999999875

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=8.2e-10  Score=83.53  Aligned_cols=57  Identities=32%  Similarity=0.573  Sum_probs=51.2

Q ss_pred             ccchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCC
Q psy7683         446 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       446 ~~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~  505 (514)
                      ...+.|||+|.+...++|+|+.|+++.|+...+++   ||+++.+|+.|+||.+||+...
T Consensus         5 g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~~---Ww~g~~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           5 GSQVEALFSYEATQPEDLEFQEGDIILVLSKVNEE---WLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSSS---CEEEECSSCEEEECGGGCCCSC
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCCC---EEEEEECCcEEEEchHHeEECC
Confidence            44578999999999999999999999999887765   9999999999999999987653

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.5e-09  Score=80.93  Aligned_cols=53  Identities=28%  Similarity=0.730  Sum_probs=48.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      +.++|+|.+...++|.|+.|+++.|+.+.+++   ||+++..|+.|+||.+|++.+
T Consensus         5 ~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~---Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           5 YRAIADYEKTSGSEMALSTGDVVEVVEKSESG---WWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EECSSCBCCSSTTCCCBCTTCEEEEEECCTTS---CCEEEECCCCCCCCGGGCCCS
T ss_pred             EEECccCcCCCCCCcCCCCCCEEEEEEecCCC---eEEEEECCCCcEEcHhHEEEC
Confidence            56899999999999999999999999887665   999999999999999999765

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=9.2e-10  Score=81.50  Aligned_cols=53  Identities=34%  Similarity=0.735  Sum_probs=48.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      +.|||+|.+....+|.|++|+++.|+.+.+++   ||+++.+|+.|+||.+||+.+
T Consensus         4 v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           4 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEECcCCCcCCcCCcCCCCCCEEEEEEecCCC---EEEEEECCeEEEEEHhHEEEC
Confidence            35899999999999999999999999887655   999999999999999999864

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.75  E-value=9.5e-10  Score=81.11  Aligned_cols=53  Identities=30%  Similarity=0.779  Sum_probs=48.4

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      +.|+|+|.+....+|+|+.|+.+.|+.+.+++   ||++++.|+.|+||.+|++.+
T Consensus         3 ~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~~~---Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           3 VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEECSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCccCCCCCEEEEeEEcCCC---EEEEEECCeEEEEeHHHEEEC
Confidence            46899999999999999999999999887655   999999999999999999864

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.6e-09  Score=89.37  Aligned_cols=58  Identities=41%  Similarity=0.775  Sum_probs=52.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.|||+|.++..++|.|++|+++.|+.+.+++   ||++++.|+.|+||.+||+++....
T Consensus        36 ~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~g---Ww~g~~~g~~G~~P~nyVe~~~~~~   93 (98)
T d1udla_          36 QVIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSNYVKMTTDSS   93 (98)
T ss_dssp             EEEESSCCCCSSTTSCCCCTTCEEEECBCCSSS---EEBCBSSSCBCCEETTSEEECCCCS
T ss_pred             EEEEccCCCCCCCCEeeEcCCCEEEEeEecCCC---eEEEEECCeEEEEchHHEEECCCCC
Confidence            368899999999999999999999999887665   9999999999999999999887643

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=1.5e-09  Score=79.34  Aligned_cols=51  Identities=31%  Similarity=0.563  Sum_probs=46.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhh
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  502 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~  502 (514)
                      +.++|+|.++..++|.|+.|+++.|+.+.+++   ||+++.+|+.|+||.+||+
T Consensus         3 yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~g---Ww~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           3 YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEECSCBCCCSSSBCCBCTTCEEEEEECCTTS---SEEEESSSCEEEECSTTEE
T ss_pred             EEEeeeECCCCCCEecCCCCCEEEEEeecCCc---eEEEEECCcEeEecHHhCC
Confidence            45799999999999999999999999887766   9999999999999999974

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.2e-09  Score=82.38  Aligned_cols=60  Identities=23%  Similarity=0.602  Sum_probs=52.9

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      ....+||+|.+...++|.|+.|+++.|+.+. +   .||+++++|+.|+||.+||+.+......
T Consensus        11 ~~~~alydy~a~~~~ELs~~~Gd~i~vl~~~-~---~ww~g~~~g~~G~fP~~yve~i~~~~~~   70 (74)
T d1j3ta_          11 LKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-E---NWWFGEVHGGRGWFPKSYVKIIPGSESG   70 (74)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-S---SEEEEESTTCCCEEEGGGEEECCCSTTS
T ss_pred             eEEEEccCCCCCCCCEecCCCCCEEEEEEcc-C---CeEEEEECCcEEEEchhhEEECCCCCCC
Confidence            4468899999999999999999999999874 3   3999999999999999999998876543

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.69  E-value=1.9e-09  Score=80.36  Aligned_cols=54  Identities=43%  Similarity=0.756  Sum_probs=48.7

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+.+++   ||+++..|+.|+||.+||++
T Consensus         3 rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           3 RRVRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEES
T ss_pred             CEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCCC---EEEEEECCeEEEEehHhEee
Confidence            3468999999999999999999999999887655   99999999999999999863

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=2.1e-09  Score=79.85  Aligned_cols=53  Identities=42%  Similarity=0.789  Sum_probs=48.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ..|||+|.+++..+|.|++|+.+.|+...+++   ||.++..|+.|+||.+|++.+
T Consensus         4 arAlydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           4 ARALYDFEALEEDELGFRSGEVVEVLDSSNPS---WWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEECcCCCCCCcCCcCCCCCCEEEEeEEcCCC---EEEEEECCcEEEEEHHHEEEc
Confidence            46899999999999999999999999887655   999999999999999999854

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=98.68  E-value=2.2e-09  Score=78.48  Aligned_cols=51  Identities=35%  Similarity=0.713  Sum_probs=45.9

Q ss_pred             hhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhc
Q psy7683         450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL  503 (514)
Q Consensus       450 taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~  503 (514)
                      .|||+|.+....+|.|++|+++.|+.+.+++   ||.++ ..|+.|+||.+||.+
T Consensus         2 ~Alydy~a~~~~eLs~~~Gd~~~vl~~~~~~---Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           2 IALYDYQTNDPQELALRCDEEYYLLDSSEIH---WWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EESSCCCCSSTTBCCCCTTCEEEECCCSCSS---CEEEECTTSCEEEECGGGEEE
T ss_pred             EEeeeECCCCCCeeeECCCCEEEEeEEcCCC---eEEEEeCCCCEEEEeHHHEeC
Confidence            5799999999999999999999999876655   99998 678999999999864

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=98.68  E-value=2.5e-09  Score=79.72  Aligned_cols=53  Identities=42%  Similarity=0.869  Sum_probs=48.6

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      +.|||+|.+....+|.|++|+++.|+.+.+++   ||++++.|+.|+||.+||+.+
T Consensus         5 ~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           5 VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSS---EEEEEETTEEEEEEGGGEEEC
T ss_pred             EEECCCCCcCCcCCcCCCCCCEEEEeEEcCCC---EEEEEECCeEEEEEhhhEEEC
Confidence            57899999999999999999999999987665   999999999999999999753

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=5e-09  Score=82.98  Aligned_cols=61  Identities=31%  Similarity=0.641  Sum_probs=53.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCC-cccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~-~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      -+.|||+|.+....+|.|++|+++.|+.+.+ .....||++++.|+.|+||.+||+.+...+
T Consensus        15 ~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~p   76 (79)
T d1uhca_          15 VYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESGP   76 (79)
T ss_dssp             CEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSSC
T ss_pred             EEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCCC
Confidence            4678999999999999999999999997653 345679999999999999999999987653

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=5.1e-09  Score=85.34  Aligned_cols=63  Identities=19%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCc-ccccceeeccCCCCCCchhhhhhcCCCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~-~e~~ww~~r~~g~~G~~P~~~l~~~~~~~~~  510 (514)
                      -+.++|+|.+....+|.|++|+++.|+.+.|. +..+||+++..|++||||.+||+.+...++.
T Consensus        19 ~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~~~~   82 (92)
T d1ug1a_          19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRSH   82 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSSC
T ss_pred             EEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCcccc
Confidence            36789999999999999999999999988653 3467999999999999999999998766654

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=4.9e-09  Score=89.28  Aligned_cols=56  Identities=29%  Similarity=0.491  Sum_probs=51.0

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      .+.+||+|.+...++|.|+.|+++.|+.+.+++   ||+|+..|+.||||..||+.+..
T Consensus        16 ~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~g---Ww~g~~~g~~G~~P~~yv~~~~~   71 (118)
T d1ng2a2          16 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQKSGQ   71 (118)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCTTS---EEEEEETTEEEEEEGGGEEETTS
T ss_pred             EEEECcCCCCCCCCEecCCCCCEEEEeEecCCC---eEEEEECCeEEEEehhhEEECCC
Confidence            467999999999999999999999999887765   99999999999999999987754

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=5.3e-09  Score=77.87  Aligned_cols=55  Identities=33%  Similarity=0.826  Sum_probs=48.4

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      ..|+|+|.+.+.++|.|+.|+++.|+.+.+. ...||.++.+|++|+||.+|++.+
T Consensus         4 ~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~-~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           4 AVALYSFAGEESGDLPFRKGDVITILKKSDS-QNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSC-TTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEccCCCCCCCCCccCCCCCEEEEEEeecC-CCCEEEEEECCcEEEEcHHHEEEC
Confidence            5689999999999999999999999988653 245999999999999999998753

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=4.1e-09  Score=82.87  Aligned_cols=55  Identities=33%  Similarity=0.625  Sum_probs=49.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      +.|+|+|.+...++|.|++|+++.|+.+.+++   ||+++.+|+.|+||.+||+.+..
T Consensus        13 ~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~~~---W~~g~~~g~~G~~P~~yv~~i~~   67 (76)
T d1ujya_          13 VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EECCSCBCCSSTTSCCBCSSCCEEESSCCSSS---CEEEEETTEEEEECTTTSEECCH
T ss_pred             EEECccCCCCCCCCccCCCCCEEEEeEEcCCC---EEEEEECCcEEEEchHHEEECCC
Confidence            56899999999999999999999999876655   99999999999999999987753

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.57  E-value=7.6e-09  Score=76.70  Aligned_cols=53  Identities=32%  Similarity=0.748  Sum_probs=46.8

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~  504 (514)
                      +.|||+|.+....+|.|++|+++.|+.+.+++   ||.++ .+|+.|+||.+||+.+
T Consensus         4 v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~g~~G~vP~~yve~~   57 (57)
T d1ckaa_           4 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSSS---EEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEECCCCCcCCcCCcCCCCCCEEEEEEEcCCC---eEEEEECCCCEEEEcHHHeEEC
Confidence            56899999999999999999999999887655   99998 4689999999999864

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=1e-08  Score=78.93  Aligned_cols=56  Identities=30%  Similarity=0.620  Sum_probs=49.6

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.|+|+|.+....+|.|++|+++.|+.+. +   +||+++.+|++|+||.+||+.+..
T Consensus         9 ~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~-~---~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           9 EEYIALYPYSSVEPGDLTFTEGEEILVTQKD-G---EWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             EEEECSSCBCCSSSSBCCBCTTCEEEECEEE-T---TEEEECSTTCCEEECGGGCEECCC
T ss_pred             cEEEECccCCCCCcCCcCCCCCCEEEEEEec-C---CEEEEEECCcEEEEchhhEEECCC
Confidence            3467899999999999999999999999763 2   499999999999999999998754

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=8.5e-09  Score=76.43  Aligned_cols=54  Identities=33%  Similarity=0.554  Sum_probs=47.4

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~  504 (514)
                      +.|||+|.+....+|.|++|+++.|+.+.++  +.||.++..|++|+||.+|++.+
T Consensus         3 ~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~~--~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           3 FVALYDFVASGDNTLSITKGEKLRVLGYNHN--GEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEEECTT--SSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEECccCCCCCcCCcCCCCCCEEEEeEecCC--CCEEEEEECCCEeEEchhheEEC
Confidence            5689999999999999999999999987653  35778999999999999999865

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.9e-09  Score=78.62  Aligned_cols=56  Identities=32%  Similarity=0.701  Sum_probs=48.9

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~  505 (514)
                      ..+.|+|+|.+....+|.|+.|+++.|+.+.+++   ||+++ ..|+.|+||.+||+.+.
T Consensus         9 ~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~g~~G~vP~~yv~~~~   65 (67)
T d1awwa_           9 KKVVALYDYMPMNANDLQLRKGDEYFILEESNLP---WWRARDKNGQEGYIPSNYVTEAE   65 (67)
T ss_dssp             CEEEBSSCCCCSSSSSCCCCSSCEEECCCCCSSS---EECCBCTTSCBCCEETTTBCCSC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEEEEcCCC---eEEEEECCCCEEEEcHHHeEECc
Confidence            3467899999999999999999999999776554   99998 57899999999998764

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.1e-08  Score=79.17  Aligned_cols=59  Identities=31%  Similarity=0.636  Sum_probs=51.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ..|||+|.+...++|.|+.|+++.|+.+.++ ..+||.++ .+|+.|+||.+|++.+..-+
T Consensus         9 ~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~-~~~Ww~~~~~~G~~G~vP~~yv~~~~~~p   68 (71)
T d1u5sa1           9 VQTLYPFSSVTEEELNFEKGETMEVIEKPEN-DPEWWKCKNARGQVGLVPKNYVVVLSDGP   68 (71)
T ss_dssp             EEESSCCCCCSSSBCCCCSSCCEEEEECCCT-TTCEEEEEETTTEEEEEETTSEEECCCSC
T ss_pred             EEECccCCCCCCCEeeECCCCEEEEEEcccC-CCCeEEEEECCCCEEEEChHHEEECCCCC
Confidence            5789999999999999999999999987554 34699998 67899999999999987643

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=1.4e-08  Score=82.66  Aligned_cols=61  Identities=33%  Similarity=0.571  Sum_probs=52.6

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~~~  508 (514)
                      ..+.|||+|.+.+.+||.|+.|+++.|+.+.+. +..||.+++.|+.|+||.+||+.+....
T Consensus         6 ~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~-~~~w~~~~~~g~~G~~P~~Yve~~~~~~   66 (93)
T d1uffa_           6 SGYRALYPFEARNHDEMSFNSGDIIQVDEKTVG-EPGWLYGSFQGNFGWFPCNYVEKMPSSE   66 (93)
T ss_dssp             CCEEESSCBCCCSSSCCCBCTTCEEEECSSCCC-SSSEEEEEETTEEEEEETTTEEECCSSS
T ss_pred             eEEEECccCCCCCCCCccCcCCCEEEEEEeccC-CCCEEEEEeCCcEEEEchHHEEECCCCC
Confidence            457899999999999999999999999977543 3458889999999999999999886653

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.8e-08  Score=77.99  Aligned_cols=57  Identities=30%  Similarity=0.575  Sum_probs=49.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCC-CchhhhhhcCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRNLLGLYPRVQ  508 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G-~~P~~~l~~~~~~~  508 (514)
                      +.|||+|.+.+..+|.|++|+++.|+.+.+++   ||+++++++.| +||.+||+.+..-.
T Consensus         9 v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~~---Ww~g~~~~~~~G~fP~~yv~~~~~~~   66 (71)
T d2hspa_           9 VKALFDYKAQREDELTFIKSAIIQNVEKQEGG---WWRGDYGGKKQLWFPSNYVEEMVNPE   66 (71)
T ss_dssp             EECCSCCCCSSSSSCCCCTTCEEBSCCCBTTT---EECCBCSSCCSCCEETTTCCSCSCCC
T ss_pred             EEEcccCCcCCcCCccCCCCCEEEEEEecCCC---EEEEEECCeEEEEEchHHeEEcCCcc
Confidence            56899999999999999999999999887655   99999876655 99999999886543

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.50  E-value=1.6e-08  Score=75.18  Aligned_cols=53  Identities=34%  Similarity=0.691  Sum_probs=46.9

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      ..|+|+|.+....+|.|+.|+++.|+.+.+++   ||+++.  .|+.|+||.+||+.+
T Consensus         3 ~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           3 ATAEYDYDAAEDNELTFVENDKIINIEFVDDD---WWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCSSS---EEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEccCCCCCCcCCcCCCCCCEEEEEEEcCCC---EEEEEECCCCCEEEEchHHEEEc
Confidence            46899999999999999999999999887665   999885  579999999999764

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=9.9e-09  Score=76.86  Aligned_cols=54  Identities=35%  Similarity=0.693  Sum_probs=47.6

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      -+.|+|+|.+...++|.|++|+++.|+.+.+++   ||+++.  .|+.|+||.+||+.+
T Consensus         5 ~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~~---W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           5 IFRAMYDYMAADADEVSFKDGDAIINVQAIDEG---WMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CEECCSCCCCSSSSBCCCCTTCEECCSEECSSS---EEEEECTTTCCEEEEETTTCEEC
T ss_pred             EEEECccCCCCCCCCcCCCCCCEEEEEEEcCCC---EEEEEECCCCCEEEEcHHHEEEC
Confidence            357899999999999999999999999887655   999886  589999999999764

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.3e-08  Score=75.19  Aligned_cols=53  Identities=38%  Similarity=0.814  Sum_probs=42.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhc
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~  503 (514)
                      ..|+|+|.+...++|.|++|+++.|+.+..  +..||.+++.|+.|+||.+||+.
T Consensus         3 a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~--~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           3 AIAKYDFKATADDELSFKRGDILKVLNEEC--DQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEECSCBCCCSSSCCCBCTTCEEEC--------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEeeCCCCCCCCCcCCCCCCEEEEEeccC--CCCeEEEEECCcEEEEehhhEEE
Confidence            357999999999999999999999887643  23488899999999999999863

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=1.4e-08  Score=84.75  Aligned_cols=62  Identities=24%  Similarity=0.456  Sum_probs=53.1

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCC--------CCCCchhhhhhcCCCCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--------KEGYVPRNLLGLYPRVQPS  510 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g--------~~G~~P~~~l~~~~~~~~~  510 (514)
                      ..|||+|.+.+..+|.|++|+++.|+.+.+..+..||.|++.|        +.||||.+||+.+....+.
T Consensus        24 ~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~~~~   93 (106)
T d1i1ja_          24 AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKPG   93 (106)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSCC
T ss_pred             EEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccccCcc
Confidence            6789999999999999999999999988666667799997644        6899999999987766554

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.47  E-value=3.1e-08  Score=76.67  Aligned_cols=59  Identities=20%  Similarity=0.498  Sum_probs=49.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeeccC-CCCCCchhhhhhcCCCCC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLYPRVQ  508 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~-g~~G~~P~~~l~~~~~~~  508 (514)
                      .+.|||+|.+.+.++|.|++|+++.|+.+.++  ..||.++.+ |+.|+||.+||+.+...+
T Consensus         8 ~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~--~~W~~~~~~~g~~G~~P~~yve~~~~~~   67 (71)
T d1k9aa1           8 ECIAKYNFHGTAEQDLPFCKGDVLTIVAVTKD--PNWYKAKNKVGREGIIPANYVQKREGVK   67 (71)
T ss_dssp             EEEESSCBCCSSSSBCCBCTTCEEEEEEECSS--TTEEEEECTTCCEEEEEGGGEEECCCCC
T ss_pred             EEEEccCCCCCCCCCccCCCCCEEEEeEeccC--CCEEEEEeCCCCEEEEchHHeEEcccCC
Confidence            36789999999999999999999999987543  347778765 799999999999886544

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=1.8e-08  Score=77.20  Aligned_cols=56  Identities=32%  Similarity=0.756  Sum_probs=46.8

Q ss_pred             hhhhhhhhccccc-ccccccCceEEEeecCCc--ccccceeecc-CCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~-eL~~k~g~~i~vl~~~~~--~e~~ww~~r~-~g~~G~~P~~~l~~~  504 (514)
                      ..|||+|.+.+.+ +|.|++|+++.|+.+.+.  ...+||.++. .|+.|+||.+||+.+
T Consensus         8 ~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           8 ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             EEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             EEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            5789999988765 899999999999987542  2356999985 789999999999764

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=2e-08  Score=74.26  Aligned_cols=53  Identities=38%  Similarity=0.783  Sum_probs=46.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      +.|+|+|.+.+..+|.|++|+++.|+.+.+++   ||+++.  .|+.|+||.+||+.+
T Consensus         3 ~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           3 FVALYDYEAITEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEEEECSSCS---EEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCC---CEEEEECCCCCEEEEeHHHeEEC
Confidence            45899999999999999999999999876554   999874  689999999999754

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.45  E-value=2.2e-08  Score=76.65  Aligned_cols=55  Identities=33%  Similarity=0.710  Sum_probs=48.7

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~  506 (514)
                      +.|||+|.+.+..+|.|+.|+++.|+.+.+.+   ||+++ ..|+.|+||.+||+.+..
T Consensus         5 v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~g~~G~~P~~yV~~~~~   60 (67)
T d1gl5a_           5 VVAMYDFQATEAHDLRLERGQEYIILEKNDLH---WWRARDKYGSEGYIPSNYVTGKKS   60 (67)
T ss_dssp             EEECSCBCCSSSSBCCBCTTCEEEEEECSSSS---EEEEECSSSCEEEEETTSEESSTT
T ss_pred             EEECCCCCCCCcCCcCCCCCCEEEEEEecCCC---cEEEEECCCCEEEEEhHHeEEecC
Confidence            57899999999999999999999999887654   99997 568999999999987654

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=2e-08  Score=77.95  Aligned_cols=58  Identities=29%  Similarity=0.490  Sum_probs=49.7

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.+||+|.+...++|.|++|+++.|+.+.+  +..||.++++|+.|+||.+||+.+..
T Consensus        11 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_          11 RKAKALYACKAEHDSELSFTAGTVFDNVHPSQ--EPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             CCEEESSCBCCCSSSBCCBCTTCEEBSCCBCS--STTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             EEEEEcccCCCCCCCEecCCCCCEEEEeeccC--CCCEEEEEeCCCEEEEchHHEEECCC
Confidence            34688999999999999999999999987654  23488899999999999999998753

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.2e-08  Score=74.92  Aligned_cols=56  Identities=32%  Similarity=0.755  Sum_probs=48.2

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~  507 (514)
                      +.|+|+|.+...++|.|++|+++.|+.+.+++   ||+++.  .|+.|+||.+||+.+.-+
T Consensus         5 ~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~~~---Ww~~~~~~~g~~G~vP~~yv~~~~s~   62 (64)
T d1fmka1           5 FVALYDYESRTETDLSFKKGERLQIVNNTEGD---WWLAHSLSTGQTGYIPSNYVAPSDSI   62 (64)
T ss_dssp             EEESSCBCCCSSSBCCBCTTCEEEESCCCSSS---EEEEEETTTCCEEEEEGGGEEETTSG
T ss_pred             EEECccCCCcCcCCcCCCCCCEEEEEEEcCCC---cEEEEECCCCCEEEEehHHeEECccC
Confidence            46899999999999999999999999876554   999875  479999999999876543

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=4e-08  Score=77.67  Aligned_cols=60  Identities=23%  Similarity=0.537  Sum_probs=50.9

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeeccCC-----CCCCchhhhhhcCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-----KEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~g-----~~G~~P~~~l~~~~~~~~  509 (514)
                      ....+||+|.+...++|.|++|+++.|+.+.+++   ||++++.+     +.|+||.+||+.+.....
T Consensus         8 ~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~~---Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~~   72 (80)
T d1ue9a_           8 EIAQVTSAYVASGSEQLSLAPGQLILILKKNTSG---WWQGELQARGKKRQKGWFPASHVKLLGPSSE   72 (80)
T ss_dssp             EEEEECSCCCCCSTTBCCCCTTCEEEEEEECSSS---EEEEEECSCCSSCCEEEEETTSEEECCSCCS
T ss_pred             CEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCCC---eEEEEEccCCCCCCEeEEEheeEEECCCCCC
Confidence            3467899999999999999999999999987665   99998654     489999999998765543

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=4.3e-08  Score=73.04  Aligned_cols=53  Identities=28%  Similarity=0.649  Sum_probs=46.3

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  505 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~  505 (514)
                      ..++|+|.+....+|.|+.|+++.|+.+.+    .||+++ .+|+.|+||.+||+.+.
T Consensus         4 a~alydf~a~~~~ELs~~~Gd~i~v~~~~~----~ww~~~~~~g~~G~~P~nyve~i~   57 (59)
T d1i07a_           4 AKSKYDFVARNSSELSVMKDDVLEILDDRR----QWWKVRNASGDSGFVPNNILDIMR   57 (59)
T ss_dssp             EEESSCBCCSSTTBCCBCTTCEEEECGGGC----CEEEEECTTSCEEEEEGGGEEEEC
T ss_pred             EEEccCCCCCCCCeeeEcCCCEEEEEEEcC----CcEEEEEcCCCEEEECHHHeEECC
Confidence            468999999999999999999999997643    399887 68899999999998764

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=5.6e-08  Score=73.77  Aligned_cols=55  Identities=42%  Similarity=0.858  Sum_probs=47.0

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcCCCC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  507 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~  507 (514)
                      +.|||+|.+....+|.|++|+++.|+.+.+    .||+++.  .|+.|+||.+||+.+..+
T Consensus         7 vvAlydy~~~~~~eLs~~~Gd~i~v~~~~~----~ww~~~~~~~g~~G~vP~~yv~~~~~~   63 (65)
T d1qcfa1           7 VVALYDYEAIHHEDLSFQKGDQMVVLEESG----EWWKARSLATRKEGYIPSNYVARVDSL   63 (65)
T ss_dssp             EEESSCBCCCSTTBCCBCTTCEEEEEECCT----TEEEEEETTTCCEEEEEGGGEEETTCG
T ss_pred             EEECCcCCCCCcCccCCCCCCEEEEEEECC----CCEEEEEccCCCEEEEchHHeEECccC
Confidence            568999999999999999999999997633    3888763  689999999999987654

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.36  E-value=5.5e-08  Score=75.81  Aligned_cols=57  Identities=25%  Similarity=0.406  Sum_probs=49.0

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCCcccccceeecc------CCCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL------NNKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~------~g~~G~~P~~~l~~~~~  506 (514)
                      ..+.+||+|.+....+|.|+.|+++.|+.+.+++   ||+++.      +|++|+||.+||+.+..
T Consensus         8 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~---Ww~v~~~~~~~~~g~~G~vP~~yve~~~~   70 (74)
T d1wfwa_           8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQN---MCLVYQPASDHSPAAEGWVPGSILAPFSG   70 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTTS---EEEEEECSCSSSSSEEEEEEGGGCCBCCS
T ss_pred             CEEEEeEEECCCCCCCccCccCCEEEEEEEcCCC---CEEEEeCccCCcCCeeeEEchHHeEECCC
Confidence            3467899999999999999999999999887655   999875      36799999999987763

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=5.9e-08  Score=72.94  Aligned_cols=52  Identities=33%  Similarity=0.732  Sum_probs=44.7

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhhc
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGL  503 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~~  503 (514)
                      -+.+||+|.+...++|.|++|+++.|+.+.++    ||+++  ..|+.|+||.+||++
T Consensus         8 ~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~~----ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           8 LVIALHSYEPSHDGDLGFEKGEQLRILEQSGE----WWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCSS----EEEEEETTTCCEEEEEGGGEEE
T ss_pred             EEEECCCCCcCCcCCcCCCCCCEEEEeEEcCC----CEEEEeccCCeEeEEcHHHEEe
Confidence            46789999999999999999999999987542    77765  468999999999874

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=7.3e-08  Score=74.71  Aligned_cols=58  Identities=22%  Similarity=0.473  Sum_probs=46.7

Q ss_pred             cchhhhhhhhc-ccccccccccCceEEEeecCCcccccceeeccC--CCCCCchhhhhhcCCC
Q psy7683         447 GAVYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPR  506 (514)
Q Consensus       447 ~g~taL~d~~~-~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~~--g~~G~~P~~~l~~~~~  506 (514)
                      ..+.|||+|.+ .+.++|.|++|+++.|+.+.+  +..||++++.  |+.|+||.+||+.+..
T Consensus         8 ~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~--~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           8 QKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEE--KDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CEEECSSCBCCSSCSSBCCBCTTCEEEECCSSC--BTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CEEEEeeccCCCCCCCEeeEcCCCEEEEEEeec--CCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            34678999987 467899999999999986543  2348888764  7899999999998864

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.2e-08  Score=79.83  Aligned_cols=63  Identities=19%  Similarity=0.321  Sum_probs=51.7

Q ss_pred             cchhhhhhhhcccccccccccCceEEEeecCC------------cccccceeecc--CCCCCCchhhhhhcCCCCCC
Q psy7683         447 GAVYALYDYEANNTDELSFKTGECIIVLRKGD------------ENEREWWWSKL--NNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       447 ~g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~------------~~e~~ww~~r~--~g~~G~~P~~~l~~~~~~~~  509 (514)
                      ..+.|||+|.+....+|.|++|+++.|+.+..            ..+.+||.|+.  .|+.|+||.+||+.+++.+.
T Consensus         4 ~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~~~   80 (83)
T d1phta_           4 YQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRKKI   80 (83)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEEEC
T ss_pred             CEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCcCC
Confidence            34678999999999999999999999996531            12345999974  68999999999999877654

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.26  E-value=8.7e-08  Score=78.35  Aligned_cols=52  Identities=31%  Similarity=0.737  Sum_probs=43.9

Q ss_pred             hhhhhhhhcccc-----cccccccCceEEEeecCCcccccceeecc------CCCCCCchhhhhhc
Q psy7683         449 VYALYDYEANNT-----DELSFKTGECIIVLRKGDENEREWWWSKL------NNKEGYVPRNLLGL  503 (514)
Q Consensus       449 ~taL~d~~~~~~-----~eL~~k~g~~i~vl~~~~~~e~~ww~~r~------~g~~G~~P~~~l~~  503 (514)
                      +.|||+|.+...     .+|.|++|+++.|+.+.+++   ||.|+.      .|+.|+||.+|+.+
T Consensus         4 vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~~---WW~~~~~~~~~~~g~~G~~Psnyv~e   66 (96)
T d1kjwa1           4 IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEE---WWQARRVHSDSETDDIGFIPSKRRVE   66 (96)
T ss_dssp             EEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSSS---EEEEEECCSSCCCSCCEEEECHHHHH
T ss_pred             EEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccCc---eEEEEEccCCCCCCCEeEEeccceee
Confidence            458899987753     48999999999999987765   999974      67899999999865

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.21  E-value=1.7e-07  Score=68.86  Aligned_cols=51  Identities=22%  Similarity=0.474  Sum_probs=42.1

Q ss_pred             hhhhhhhcccccccccccCceEEEeecCCcccccceeec--cCCCCCCchhhhhh
Q psy7683         450 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG  502 (514)
Q Consensus       450 taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r--~~g~~G~~P~~~l~  502 (514)
                      .+||+|.+.+.++|.|+.|+++.|+.+.+..  .||+++  ..|+.|+||.+||+
T Consensus         3 ralydf~a~~~~ELs~~~Gd~i~v~~~~~~~--~w~~~~~~~~g~~G~~P~nyve   55 (56)
T d1zuua1           3 KVLYAYVQKDDDEITITPGDKISLVARDTGS--GWTKINNDTTGETGLVPTTYIR   55 (56)
T ss_dssp             EECSCBCCCSTTBCCBCTTCCEEEEECCSSS--SEEEEEETTTTEEEEEEGGGEE
T ss_pred             EEeeeeCCCCCCEeeECCCCEEEEEEEecCC--CcEEEeCCCCceEEEEehhhEE
Confidence            5799999999999999999999999775432  355544  46899999999986

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=3.7e-07  Score=74.56  Aligned_cols=60  Identities=23%  Similarity=0.457  Sum_probs=46.4

Q ss_pred             chhhhhhhhccc------ccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhhcCCCCCC
Q psy7683         448 AVYALYDYEANN------TDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  509 (514)
Q Consensus       448 g~taL~d~~~~~------~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~~~~~~~~  509 (514)
                      -+.|+|+|....      .++|.|+.|+++.|+.+.++.  .||.++ ..|+.|+||.+||+.+.....
T Consensus        19 ~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~~~--gW~~~~~~~G~~G~~P~nyve~~~~~~~   85 (96)
T d1wiea_          19 LCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDED--GFYEGELLDGQRGLVPSNFVDFVQDNES   85 (96)
T ss_dssp             EEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCCSS--SCCEEEETTCCBCBCCTTSEECCCSCCC
T ss_pred             EEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeCCC--ceEEEEeCCCCEEEEehHHeEECCCccc
Confidence            467899997654      478999999999999765432  366665 578999999999998865543

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.19  E-value=2.1e-07  Score=75.81  Aligned_cols=53  Identities=26%  Similarity=0.523  Sum_probs=46.1

Q ss_pred             chhhhhhhhcccccc-------cccccCceEEEeecCCcccccceeecc---CCCCCCchhhhhhc
Q psy7683         448 AVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGL  503 (514)
Q Consensus       448 g~taL~d~~~~~~~e-------L~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~G~~P~~~l~~  503 (514)
                      -+.|+|+|.+...++       |.|++|+++.|+.+.+++   ||.|++   .|+.|+||..++.+
T Consensus        23 ~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~---WW~gr~~~~~g~~G~~PS~~~~e   85 (96)
T d1t0ha_          23 AVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNND---WWIGRLVKEGCEIGFIPSPVKLE   85 (96)
T ss_dssp             EEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSS---EEEEEESSTTCCCEEEECHHHHH
T ss_pred             EEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCC---ceEEEEcCCCCCEEEecCcHHHH
Confidence            367899999998888       999999999999998776   999998   57899999976443

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=1.5e-07  Score=74.86  Aligned_cols=57  Identities=28%  Similarity=0.478  Sum_probs=47.4

Q ss_pred             chhhhhhhhcccccccccccCceEEEeecCCc--ccccceeecc----------CCCCCCchhhhhhcC
Q psy7683         448 AVYALYDYEANNTDELSFKTGECIIVLRKGDE--NEREWWWSKL----------NNKEGYVPRNLLGLY  504 (514)
Q Consensus       448 g~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~--~e~~ww~~r~----------~g~~G~~P~~~l~~~  504 (514)
                      .+.|||+|.+.+..+|.|+.|+++.|+.+.+.  .+..||.|..          .|+.|+||.+||+.+
T Consensus        14 ~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~i   82 (83)
T d1bb9a_          14 KVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV   82 (83)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEE
T ss_pred             EEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEc
Confidence            36789999999999999999999999987652  2345998754          467999999999875

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.11  E-value=4.8e-07  Score=69.37  Aligned_cols=54  Identities=20%  Similarity=0.418  Sum_probs=43.0

Q ss_pred             hhhhhhhhcccccccccccCceEEEeecCCcccccceeecc--CCCCCCchhhhhhcC
Q psy7683         449 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  504 (514)
Q Consensus       449 ~taL~d~~~~~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r~--~g~~G~~P~~~l~~~  504 (514)
                      +++++.+.+.+..+|.|++||++.|+.+..  +..||.|+.  .|+.|+||.+||+-+
T Consensus        13 y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~--~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_          13 YYGIPPPPGAFGPFLRLNPGDIVELTKAEA--EHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             BSSSSCCGGGCSCBCCBCTTCEEEEEECCT--TCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EeccCCCCCCCCCEeeEcCCCEEEEEEEec--CCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            445556667889999999999999997543  234999986  589999999998754

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=1.1e-06  Score=77.14  Aligned_cols=51  Identities=24%  Similarity=0.533  Sum_probs=44.8

Q ss_pred             chhhhhhhhcccccc-------cccccCceEEEeecCCcccccceeecc---CCCCCCchhhhh
Q psy7683         448 AVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLL  501 (514)
Q Consensus       448 g~taL~d~~~~~~~e-------L~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~G~~P~~~l  501 (514)
                      -+.++|+|.+....+       |.|++||++.|+.+.+++   ||.||.   +|+.|+||..++
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~~---WW~gr~~~~~g~~G~iPS~~~   85 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNND---WWIGRLVKEGCEIGFIPSPLR   85 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEETT---EEEEEESSTTCCCEEEECHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCCC---cEEEEEcCCCCceeEeCCchh
Confidence            478899999998887       999999999999997665   999997   689999998653

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=1.7e-05  Score=68.42  Aligned_cols=49  Identities=18%  Similarity=0.464  Sum_probs=42.6

Q ss_pred             hhhhhhhhcccccc-------cccccCceEEEeecCCcccccceeecc---CCCCCCchhhh
Q psy7683         449 VYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNL  500 (514)
Q Consensus       449 ~taL~d~~~~~~~e-------L~~k~g~~i~vl~~~~~~e~~ww~~r~---~g~~G~~P~~~  500 (514)
                      +.++|+|.+...++       |.|++|+++.|+.+.|++   ||.||.   .|+.|+||.-+
T Consensus        26 vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~---WW~~r~~~~~~~~G~iPs~~   84 (136)
T d1vyua1          26 VRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSND---WWIGRLVKEGGDIAFIPSPQ   84 (136)
T ss_dssp             EEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSS---EEEEEESSTTCCCEEEECHH
T ss_pred             EEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCC---cEEEEeccCCCceeccCchH
Confidence            67899999888777       899999999999998766   999996   46789999976

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.40  E-value=0.12  Score=39.01  Aligned_cols=41  Identities=32%  Similarity=0.477  Sum_probs=34.7

Q ss_pred             cccccccccCceEEEeecCCcccccceeec-cCCCCCCchhhhhh
Q psy7683         459 NTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLG  502 (514)
Q Consensus       459 ~~~eL~~k~g~~i~vl~~~~~~e~~ww~~r-~~g~~G~~P~~~l~  502 (514)
                      ...+|.++.|+.+.|+...+.+   -|++| -.|++||+++.+|.
T Consensus        35 g~~dL~vk~GE~ldVIr~t~~~---k~LcRN~~GkYGYV~~~~l~   76 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTDDT---KVLCRNEEGKYGYVLRSYLA   76 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESSSS---EEEEEETTTEEEEEEGGGSC
T ss_pred             CcccCCcCCCCEEEEEEeCCCC---eEEEEcCCCcEEEEEeeeec
Confidence            4568999999999999987654   78898 78999999987763