Psyllid ID: psy8018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
Protein Sequence
MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVARTSNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ
Secondary Structure (PSIPRED)
cEEEEEEccccEEEEEEcccccHHHHHHHHHHHccccccccEEEEccccccccHHHHHHcccccccEEEEEHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccEEEEEEEEcccccccccHHHHHHccccccccccccccccccccEEEEEEEEEEEEEEccEEEEEEEEEEEccccccHHcHHHHHHccEEEEccccEEEEEEccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEccccEEEEEcccccEHHHHHHHHHHHccccHHHEEEEEccccccccHHHHHHcccccccEEEEHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcEEEEEEEEEEEEcccEEEEEEcccccHEEccHHHHHHcccHHHHHHHHcccEEcccccEEEEEEEEEEEEEcccccccEEEEEccccccEEEEHHHHHHccEEEEccccEEEEccccHcHccccHccccccccccc
Coil and Loop (DISEMBL)
mkvtvtsldnecfllDVSEDLELENFKAFCEVQSGISAQEIAIEFQGnalvdnkktlkdyniqdgdLVLLKRVQVartsnpsdDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDflttsfsvledqpmdMLLGLDMLKRHQVQIAIENdflttsfsvledqpmdMLLGLDMLKRHQ
Flexible Loop (DISEMBL)
mkvtvtsldnecfLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQvartsnpsddfaRILRQQYEEREKREQLRqrmltadpfdTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGldmlkrhq
Low Complexity Region (SEG)
MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVARTSNPSDDFARILrqqyeerekreqlrqrMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ
Disordered region (IsUnstruct)
*****TSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA***********************************************************AMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGL*******
Disordered Region (DISOPRED)
MKVTVTSLDNECFLLDVSEDLELENFKAFCEV**********IEFQGNALVDNKKTLKDYNIQDGDLVLL***************************************************************EAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTR************IIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDM***********
Disordered Region (DISEMBL)
MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVARTSNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ
Disordered Region (DISPRO)
MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVARTSNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMD*LL*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVARTSNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	280	2.2.26 [Sep-21-2011]
Q5TDH0	399	Protein DDI1 homolog 2 OS	yes	N/A	0.785	0.551	0.561	2e-66
A2ADY9	399	Protein DDI1 homolog 2 OS	yes	N/A	0.771	0.541	0.566	9e-66
Q6TH22	411	Protein DDI1 homolog 2 OS	yes	N/A	0.757	0.515	0.550	3e-65
Q497D6	394	Protein DDI1 homolog 2 OS	yes	N/A	0.603	0.428	0.635	7e-64
Q7ZYA7	393	Protein DDI1 homolog 2 OS	N/A	N/A	0.603	0.430	0.630	1e-63
Q2T9Z1	396	Protein DDI1 homolog 1 OS	no	N/A	0.678	0.479	0.597	2e-63
Q8WTU0	396	Protein DDI1 homolog 1 OS	no	N/A	0.678	0.479	0.603	3e-63
Q95JI3	396	Protein DDI1 homolog 1 OS	N/A	N/A	0.678	0.479	0.597	3e-62
A0JPP7	408	Protein DDI1 homolog 1 OS	yes	N/A	0.678	0.465	0.587	2e-61
Q9DAF3	408	Protein DDI1 homolog 1 OS	no	N/A	0.678	0.465	0.572	5e-60

>sp|Q5TDH0|DDI2_HUMAN Protein DDI1 homolog 2 OS=Homo sapiens GN=DDI2 PE=1 SV=1

 Score =  252 bits (643), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 128/228 (56%), Positives = 161/228 (70%), Gaps = 8/228 (3%)

Query: 33  QSGISAQEIAIEFQGNALVDNKKTLKDYNIQDG-DLVLLKR----VQVARTSNPSDDFAR 87
           QS  S  EI    QG   +DN   L+D  + +  +L LLK     +  A  S   + F+R
Sbjct: 117 QSHSSPGEITSSPQG---LDNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFSR 173

Query: 88  ILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSV 147
           +L +Q ++R +REQ R R+ +ADPFD EAQ  I E+I++ NI+ NM  AME  PE+FG V
Sbjct: 174 VLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQV 233

Query: 148 IMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGR 207
           +MLYINC+VNGHPVKAF+DSGAQ TIMS ACA R NI RL+D RWAGIAKGVG Q+IIGR
Sbjct: 234 VMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGR 293

Query: 208 IHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           +H+ Q+ IE DFL  SFS+LE+QPMDMLLGLDMLKRHQ  I ++ + L
Sbjct: 294 VHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVL 341

Homo sapiens (taxid: 9606)

>sp|A2ADY9|DDI2_MOUSE Protein DDI1 homolog 2 OS=Mus musculus GN=Ddi2 PE=1 SV=1

 Score =  250 bits (638), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 127/224 (56%), Positives = 159/224 (70%), Gaps = 8/224 (3%)

Query: 37  SAQEIAIEFQGNALVDNKKTLKDYNIQDG-DLVLLKR----VQVARTSNPSDDFARILRQ 91
           S  E+A   QG   +DN   L+D  + +  +L LLK     +  A  S   + F+R+L +
Sbjct: 121 SPGEMASSPQG---LDNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLEKFSRVLVE 177

Query: 92  QYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLY 151
           Q ++R +REQ R R+ +ADPFD EAQ  I E+I++ NI+ NM  AME  PE+FG V MLY
Sbjct: 178 QQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVAMLY 237

Query: 152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMV 211
           INCRVNGHPVKAF+DSGAQ TIMS ACA R NI RL+D RWAGIAKGVG Q+IIGR+H+ 
Sbjct: 238 INCRVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLA 297

Query: 212 QIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           Q+ IE DFL  SFS+LE+QPMDMLLGLDMLKRHQ  I ++ + L
Sbjct: 298 QVQIEGDFLACSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVL 341

Mus musculus (taxid: 10090)

>sp|Q6TH22|DDI2_DANRE Protein DDI1 homolog 2 OS=Danio rerio GN=ddi2 PE=2 SV=1

 Score =  248 bits (633), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/227 (55%), Positives = 159/227 (70%), Gaps = 15/227 (6%)

Query: 34  SGISAQEIAIEFQGNALVDNKKTLKDYNIQDG-DLVLLKR----VQVARTSNPSDDFARI 88
           SG+S Q +          DN   L+D  + +  +L LLK     +  A  S   + F ++
Sbjct: 135 SGVSPQGL----------DNPALLRDMLLANPHELSLLKERNPPLAEALLSGDLERFTKV 184

Query: 89  LRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVI 148
           L +Q ++R +R+Q R ++LTADPFD +AQ  I EEI++ NI+ NM  AME  PE+FG V+
Sbjct: 185 LMEQQQDRARRDQERIKLLTADPFDLDAQAKIEEEIRQHNIEENMTIAMEEAPESFGQVV 244

Query: 149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRI 208
           MLYINC+VNGHPVKAF+DSGAQ TIMS ACA R NI RL+D RWAGIAKGVG Q+IIGR+
Sbjct: 245 MLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRV 304

Query: 209 HMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           H+ Q+ IE DFL  SFS+LEDQPMDMLLGLDMLKRHQ  I ++ + L
Sbjct: 305 HLAQVQIEGDFLPCSFSILEDQPMDMLLGLDMLKRHQCSIDLKKNVL 351

Danio rerio (taxid: 7955)

>sp|Q497D6|DDI2_XENTR Protein DDI1 homolog 2 OS=Xenopus tropicalis GN=ddi2 PE=2 SV=1

 Score =  244 bits (622), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 110/173 (63%), Positives = 137/173 (79%)

Query: 83  DDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPE 142
           + F ++L +Q +ER +REQ R R+ +ADPFD EAQ  I E+I++ NI+ NM  AME  PE
Sbjct: 164 EKFTKVLLEQQQERARREQERIRLYSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPE 223

Query: 143 TFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ 202
           +FG V+MLYINC+VNG+PVKAF+DSGAQ TIMS ACA R +I RL+D RWAGIAKGVG Q
Sbjct: 224 SFGQVVMLYINCKVNGYPVKAFVDSGAQMTIMSQACAERCHIMRLVDRRWAGIAKGVGTQ 283

Query: 203 RIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           +IIGR+H+ Q+ IE DFL  SFS+LE+QPMDMLLGLDMLKRHQ  I +E + L
Sbjct: 284 KIIGRVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLEKNVL 336

Xenopus tropicalis (taxid: 8364)

>sp|Q7ZYA7|DDI2_XENLA Protein DDI1 homolog 2 OS=Xenopus laevis GN=ddi2 PE=2 SV=1

 Score =  243 bits (620), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 109/173 (63%), Positives = 138/173 (79%)

Query: 83  DDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPE 142
           + F ++L++Q +ER +REQ R R+ +ADPFD +AQ  I E+I++ NI+ NM  AME  PE
Sbjct: 163 EKFTKVLQEQQQERARREQERIRLYSADPFDLDAQAKIEEDIRQHNIEENMTIAMEEAPE 222

Query: 143 TFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ 202
           +FG V+MLYINC+VNG+PVKAF+DSGAQ TIMS ACA R +I RL+D RWAGIAKGVG Q
Sbjct: 223 SFGQVVMLYINCKVNGYPVKAFVDSGAQMTIMSQACAERCHIMRLVDRRWAGIAKGVGTQ 282

Query: 203 RIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           +IIGR+H+ Q+ IE DFL  SFS+LE+QPMDMLLGLDMLKRHQ  I +E + L
Sbjct: 283 KIIGRVHLAQVQIEGDFLPCSFSILEEQPMDMLLGLDMLKRHQCSIDLEKNVL 335

Xenopus laevis (taxid: 8355)

>sp|Q2T9Z1|DDI1_BOVIN Protein DDI1 homolog 1 OS=Bos taurus GN=DDI1 PE=2 SV=1

 Score =  242 bits (618), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 142/194 (73%), Gaps = 4/194 (2%)

Query: 66  DLVLLKR----VQVARTSNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIA 121
           DL LLK     +  A  S   + F+++L +Q  ER  REQ R R+ +ADPFD EAQ  I 
Sbjct: 150 DLSLLKERNPSLAEALLSGNLESFSQVLMEQQRERALREQERLRLFSADPFDLEAQAKIE 209

Query: 122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
           EEI++ NI+ NM  AME  PE+FG V MLYINCRVNGHP+KAF+DSGAQ TIM+  CA R
Sbjct: 210 EEIRQQNIEENMSIAMEEAPESFGQVAMLYINCRVNGHPLKAFVDSGAQMTIMNQVCAER 269

Query: 182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
            NI RL+D RWAG+AKGVG QRI+GR+H+ QI IE DFL  SFS+LE+QPMDMLLGLDML
Sbjct: 270 CNIIRLVDRRWAGVAKGVGTQRILGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDML 329

Query: 242 KRHQVQIAIENDFL 255
           +RHQ  I ++ + L
Sbjct: 330 RRHQCSIDLKRNVL 343

Bos taurus (taxid: 9913)

>sp|Q8WTU0|DDI1_HUMAN Protein DDI1 homolog 1 OS=Homo sapiens GN=DDI1 PE=1 SV=1

 Score =  242 bits (617), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/194 (60%), Positives = 142/194 (73%), Gaps = 4/194 (2%)

Query: 66  DLVLLKR----VQVARTSNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIA 121
           DL LLK     +  A  S   + F+++L +Q  E+  REQ R R+ TADP D EAQ  I 
Sbjct: 156 DLSLLKERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIE 215

Query: 122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
           EEI++ NI+ NM  A+E  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct: 216 EEIRQQNIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 275

Query: 182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
            NI RL+D RWAG+AKGVG QRIIGR+H+ QI IE DFL  SFS+LEDQPMDMLLGLDML
Sbjct: 276 CNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDML 335

Query: 242 KRHQVQIAIENDFL 255
           +RHQ  I ++ + L
Sbjct: 336 RRHQCSIDLKKNVL 349

Homo sapiens (taxid: 9606)

>sp|Q95JI3|DDI1_MACFA Protein DDI1 homolog 1 OS=Macaca fascicularis GN=DDI1 PE=2 SV=1

 Score =  238 bits (608), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/194 (59%), Positives = 140/194 (72%), Gaps = 4/194 (2%)

Query: 66  DLVLLKR----VQVARTSNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIA 121
           DL LLK     +  A  S   + F+++L  Q  E+  REQ R  + TADP D EAQ  I 
Sbjct: 156 DLSLLKERNPPLAEALLSGSLETFSQVLMAQQREKALREQERLHLYTADPLDREAQAKIE 215

Query: 122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
           EEI++ NI+ NM  A+E  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct: 216 EEIRQQNIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 275

Query: 182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
            NI RL+D RWAG+AKGVG QRIIGR+H+ QI IE DFL  SFS+LEDQPMDMLLGLDML
Sbjct: 276 CNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDML 335

Query: 242 KRHQVQIAIENDFL 255
           +RHQ  I ++ + L
Sbjct: 336 RRHQCSIDLKKNVL 349

Macaca fascicularis (taxid: 9541)

>sp|A0JPP7|DDI1_RAT Protein DDI1 homolog 1 OS=Rattus norvegicus GN=Ddi1 PE=2 SV=1

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 114/194 (58%), Positives = 140/194 (72%), Gaps = 4/194 (2%)

Query: 66  DLVLLKRVQVART----SNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIA 121
           DL LLK    A      S   + F+++L +Q  ER  REQ   R+ +ADPFD E Q  I 
Sbjct: 162 DLSLLKERNPALAEALLSGNLETFSQVLVEQQRERAMREQEMFRLYSADPFDQETQARIE 221

Query: 122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
           EEI++ NI+ NM  AME  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct: 222 EEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 281

Query: 182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
            NI RL+D RWAG+AKGVG QRI+GR+H+ QI IE DFL  SFS+LE+QPMD+LLGLDML
Sbjct: 282 CNIMRLVDRRWAGVAKGVGTQRIMGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDML 341

Query: 242 KRHQVQIAIENDFL 255
           +RHQ  I ++ + L
Sbjct: 342 RRHQCSIDLKKNVL 355

Rattus norvegicus (taxid: 10116)

>sp|Q9DAF3|DDI1_MOUSE Protein DDI1 homolog 1 OS=Mus musculus GN=Ddi1 PE=1 SV=1

 Score =  231 bits (588), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 111/194 (57%), Positives = 138/194 (71%), Gaps = 4/194 (2%)

Query: 66  DLVLLKRVQVART----SNPSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIA 121
           DL LLK    A      S   + F+++L +Q  ER  REQ   R+ + +PFD E Q  I 
Sbjct: 162 DLSLLKERNPALAEALLSGNLETFSQVLMEQQRERTLREQEMFRLYSTNPFDQETQARIE 221

Query: 122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
           EEI++ NI+ NM  AME  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct: 222 EEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 281

Query: 182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
            NI RL+D RW G+AKGVG QRI+GR+H+ QI IE DFL  SFS+LE+QPMD+LLGLDML
Sbjct: 282 CNIMRLVDRRWGGVAKGVGTQRIMGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDML 341

Query: 242 KRHQVQIAIENDFL 255
           +RHQ  I ++ + L
Sbjct: 342 RRHQCSIDLKKNVL 355

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
114051417	389	DNA-damage inducible protein [Bombyx mor	0.910	0.655	0.531	5e-90
270007166	448	hypothetical protein TcasGA2_TC013702 [T	0.910	0.569	0.544	1e-89
332374366	399	unknown [Dendroctonus ponderosae]	0.910	0.639	0.569	2e-89
241122184	409	DNA damage inducible protein, putative [	0.910	0.623	0.508	3e-83
383851382	448	PREDICTED: protein DDI1 homolog 2-like [	0.914	0.571	0.509	1e-82
328724597	434	PREDICTED: protein DDI1 homolog 2-like i	0.760	0.490	0.628	6e-78
328724599	453	PREDICTED: protein DDI1 homolog 2-like i	0.760	0.470	0.628	6e-78
380020373	465	PREDICTED: protein DDI1 homolog 2-like [	0.910	0.548	0.474	8e-77
110759016	465	PREDICTED: protein DDI1 homolog 2-like [	0.910	0.548	0.474	8e-77
340729851	467	PREDICTED: protein DDI1 homolog 2-like [	0.910	0.546	0.474	9e-77

>gi|114051417|ref|NP_001040314.1| DNA-damage inducible protein [Bombyx mori] gi|87248309|gb|ABD36207.1| DNA-damage inducible protein [Bombyx mori]

 Score =  336 bits (862), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 175/329 (53%), Positives = 215/329 (65%), Gaps = 74/329 (22%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           MKVTVT+L+++ F+LDVSEDLELENFKAFCE++SG  A++I + F G  L++NKK+LK++
Sbjct: 1   MKVTVTTLNDDIFVLDVSEDLELENFKAFCEIESGFPAKDITLHFNGKPLLNNKKSLKEH 60

Query: 61  NIQDGDLVLL----------------------------KRVQVARTS---------NPSD 83
            + DGD+++L                              +QV  TS          P +
Sbjct: 61  GVHDGDVIILLHMVNSAQNLSVNDSSQALPSGIASLDFSNIQVPTTSANTSMASRNTPVE 120

Query: 84  DFARILRQQYEEREK----------------------------REQL---------RQRM 106
           +  RI+R+ +                                 REQ+         R RM
Sbjct: 121 EDPRIIREMFLANPDQLALLKQNNPRLADALLTGSLDTFAAVLREQILARTERQQQRIRM 180

Query: 107 LTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFID 166
           + +DPFDTEAQ++IAEEI++ NI+ANMEAAMEYNPETFG+V+MLYINC VNG PVKAFID
Sbjct: 181 MNSDPFDTEAQRMIAEEIRQKNIEANMEAAMEYNPETFGTVVMLYINCHVNGFPVKAFID 240

Query: 167 SGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSV 226
           SGAQTTIMSAACA R NI RL+DTRWAGIAKGVGVQRIIGRIHMVQ+ IE DFLTTSFSV
Sbjct: 241 SGAQTTIMSAACAERCNIMRLVDTRWAGIAKGVGVQRIIGRIHMVQMRIEQDFLTTSFSV 300

Query: 227 LEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           LE+QPMDMLLGLDMLKRHQ  I ++   L
Sbjct: 301 LEEQPMDMLLGLDMLKRHQCNIDLKRGVL 329

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007166|gb|EFA03614.1| hypothetical protein TcasGA2_TC013702 [Tribolium castaneum]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 176/323 (54%), Positives = 216/323 (66%), Gaps = 68/323 (21%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           MKVTVT+L +  F+LDVSEDLELENFKAFCEV++G  A EI I + G  L+DNKK+LK++
Sbjct: 1   MKVTVTTLTDFIFVLDVSEDLELENFKAFCEVETGFPATEIVIAYNGMPLMDNKKSLKEH 60

Query: 61  NIQDGDLVLLKR-----------------------VQVARTS--------NPSDDFARIL 89
            I+DGD V L+                        +QV  ++         PS+D   ++
Sbjct: 61  GIRDGDAVCLQHMLQHGASQSSFDLQGVPRLDFSGIQVPNSTRGNQVSPGRPSEDDPVLI 120

Query: 90  RQQY----------------------------------EEREKREQLRQ---RMLTADPF 112
           R  +                                  E+ + R++  Q   RML ADPF
Sbjct: 121 RDMFLANPDQLALLKQNNPRLADALLTGNIDTFASVLREQVQARQEREQQRLRMLNADPF 180

Query: 113 DTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTT 172
           DTEAQ+LIAEEI++ NI+ANMEAAMEYNPE+FG+V+MLYINCRVNG+PVKAFIDSGAQTT
Sbjct: 181 DTEAQRLIAEEIRQKNIEANMEAAMEYNPESFGTVVMLYINCRVNGYPVKAFIDSGAQTT 240

Query: 173 IMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPM 232
           IMS++CA R NI RL+DTRWAGIAKGVGVQ+IIGRIHMVQI IE+D+LTTSFSVLE+QPM
Sbjct: 241 IMSSSCAERCNIMRLVDTRWAGIAKGVGVQKIIGRIHMVQIQIESDYLTTSFSVLENQPM 300

Query: 233 DMLLGLDMLKRHQVQIAIENDFL 255
           DMLLGLDMLKRHQ  I +  + L
Sbjct: 301 DMLLGLDMLKRHQCCIDLRANVL 323

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332374366|gb|AEE62324.1| unknown [Dendroctonus ponderosae]

 Score =  335 bits (858), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 180/316 (56%), Positives = 212/316 (67%), Gaps = 61/316 (19%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           MKVTVT+L +  F+LDVSE+LELENFKAFCE++SG  A EI I F G  L+DNKK+LKD 
Sbjct: 1   MKVTVTTLTDFIFVLDVSEELELENFKAFCEIESGFPASEIVIAFNGMPLMDNKKSLKDL 60

Query: 61  ---------------------------------NIQ----------DGDLVLLKRVQVA- 76
                                            NIQ          + D VL++ + +A 
Sbjct: 61  GIRDGDAVILQHMLSGSQTNIDQNSSVSSFDFSNIQVPNSMRNRNTEDDPVLIRDMFLAN 120

Query: 77  -------RTSNPS----------DDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKL 119
                  + +NP           D FA +L+ Q   R++REQ R RM  ADPFDTEAQ+L
Sbjct: 121 PDQLALLKQNNPRLADALLSGNIDTFASVLKDQVTARQEREQQRLRMANADPFDTEAQRL 180

Query: 120 IAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACA 179
           IAEEI++ NI+ANMEAAMEYNPE+FG+V+MLYINC VNG PVKAFIDSGAQTTIMS+ CA
Sbjct: 181 IAEEIRQKNIEANMEAAMEYNPESFGTVVMLYINCHVNGFPVKAFIDSGAQTTIMSSRCA 240

Query: 180 ARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLD 239
            R NI RL+DTRWAGIAKGVGVQRIIGRIHMVQI IEN +LTTSFSVLE+QPMDMLLGLD
Sbjct: 241 ERCNIMRLVDTRWAGIAKGVGVQRIIGRIHMVQIQIENVYLTTSFSVLEEQPMDMLLGLD 300

Query: 240 MLKRHQVQIAIENDFL 255
           MLKRHQ  I +  + L
Sbjct: 301 MLKRHQCCIDLHANVL 316

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241122184|ref|XP_002403483.1| DNA damage inducible protein, putative [Ixodes scapularis] gi|215493437|gb|EEC03078.1| DNA damage inducible protein, putative [Ixodes scapularis]

 Score =  314 bits (805), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 157/309 (50%), Positives = 207/309 (66%), Gaps = 54/309 (17%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           MK+TVT+L  E ++LDV  ++ELEN KA CE +S I A+E+ +  +G  L+D+K++L  +
Sbjct: 1   MKLTVTTLSGELYMLDVGAEMELENLKALCEYESSIPAREMVVMHEGRPLLDDKRSLSAH 60

Query: 61  NIQDGDLVLLKRV------------------------------------------QVA-- 76
           +I+DGD++L++ +                                          Q+A  
Sbjct: 61  SIKDGDVLLIQHLVPPQPSQASSSSGTELSLGGGAATQGEEDPAFIRDMILKSPEQLALL 120

Query: 77  RTSNPS----------DDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKK 126
           + +NP           D F R+L +Q +E+  R++ R R++ ADPFD EAQ+LIAEEI++
Sbjct: 121 KHNNPQLADALLTGDLDTFTRVLNEQQKEKADRDRHRIRIMNADPFDPEAQRLIAEEIRQ 180

Query: 127 SNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITR 186
            NI +NMEAAMEY+PE+FG V+MLYINCRVNGHPVKAFIDSGAQTTIMS ACA R  I R
Sbjct: 181 QNIDSNMEAAMEYHPESFGQVVMLYINCRVNGHPVKAFIDSGAQTTIMSQACAERCAIMR 240

Query: 187 LIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQV 246
           L+D RWAG+AKGVG Q+IIGRIH+VQI IE  FLT+SFSVLE+QPMDMLLGLDMLKRHQ 
Sbjct: 241 LVDPRWAGVAKGVGTQKIIGRIHLVQIEIEGVFLTSSFSVLEEQPMDMLLGLDMLKRHQC 300

Query: 247 QIAIENDFL 255
            I ++ + L
Sbjct: 301 LIDLKRNLL 309

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851382|ref|XP_003701212.1| PREDICTED: protein DDI1 homolog 2-like [Megachile rotundata]

 Score =  312 bits (799), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 161/316 (50%), Positives = 204/316 (64%), Gaps = 60/316 (18%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           MKVTV++L ++ F+LDV ED+EL NFKA CE +  +   E+ I F G  L+D+KK+LKD+
Sbjct: 1   MKVTVSTLSDDIFVLDVIEDMELGNFKALCESECNVPTHEMMIAFNGLPLIDDKKSLKDH 60

Query: 61  NIQDGDLVLLKR------------------------VQVARTSNPSDD------------ 84
            IQDGD+V+L+                         ++V  TS   DD            
Sbjct: 61  GIQDGDIVILQHMHQSGTDLNLHPLNGAIPMWDFSSIRVPGTSRREDDPEMIREMLLANP 120

Query: 85  ------------------------FARILRQQYEEREKREQLRQRMLTADPFDTEAQKLI 120
                                   F+ +L++Q + RE+RE  R RM+ ADPFDTEAQ+ I
Sbjct: 121 DQLALLNQNNPELAGALIAGNLETFSTVLKEQIKVREEREAQRVRMMYADPFDTEAQRYI 180

Query: 121 AEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAA 180
           AE+I++ NI ANMEAAMEYNPE FGSV+MLYINC+VNG PVKAFID+GAQ+T+MS ACA 
Sbjct: 181 AEDIRQKNIVANMEAAMEYNPEIFGSVVMLYINCKVNGFPVKAFIDTGAQSTVMSEACAE 240

Query: 181 RVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDM 240
           R +I RL+D+RWAGIA G+G Q IIGRIHMVQI I ND LTTSF+VL +Q MDMLLGLDM
Sbjct: 241 RCHIMRLVDSRWAGIAHGIGTQNIIGRIHMVQIQIGNDHLTTSFAVLAEQNMDMLLGLDM 300

Query: 241 LKRHQVQIAIENDFLT 256
           LKRHQ  I ++ + LT
Sbjct: 301 LKRHQCCIDLKKNVLT 316

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328724597|ref|XP_001948469.2| PREDICTED: protein DDI1 homolog 2-like isoform 1 [Acyrthosiphon pisum]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 144/229 (62%), Positives = 181/229 (79%), Gaps = 16/229 (6%)

Query: 43  IEFQGNALVDNKKTLKDYNIQDGD------------LVLLK----RVQVARTSNPSDDFA 86
           I+  G++  +N  T + + +QD +            L LLK    R+  A +SN  ++F+
Sbjct: 100 IQVPGSSNSNNPGTNRQHQMQDAEYVRNLFLSSPEQLALLKQNNPRLADALSSNKIEEFS 159

Query: 87  RILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGS 146
           +++ +Q EER+KRE  R RM+ A PFD+EAQKLIAEEI++ NI+ANMEAAMEYNPE FG+
Sbjct: 160 KVMAEQMEERKKREDQRIRMMKAHPFDSEAQKLIAEEIRQKNIEANMEAAMEYNPEMFGT 219

Query: 147 VIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIG 206
           V+MLYINC+V+G+PVKAFIDSGAQTTIMS+ACA R NI RL+D+RWAG+AKGVGVQ+IIG
Sbjct: 220 VVMLYINCKVDGYPVKAFIDSGAQTTIMSSACAERCNIMRLVDSRWAGLAKGVGVQKIIG 279

Query: 207 RIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           RIHMVQ+AIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ  I +E++ L
Sbjct: 280 RIHMVQVAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQCCIDLEHNVL 328

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328724599|ref|XP_003248194.1| PREDICTED: protein DDI1 homolog 2-like isoform 2 [Acyrthosiphon pisum]

 Score =  296 bits (758), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 144/229 (62%), Positives = 181/229 (79%), Gaps = 16/229 (6%)

Query: 43  IEFQGNALVDNKKTLKDYNIQDGD------------LVLLK----RVQVARTSNPSDDFA 86
           I+  G++  +N  T + + +QD +            L LLK    R+  A +SN  ++F+
Sbjct: 100 IQVPGSSNSNNPGTNRQHQMQDAEYVRNLFLSSPEQLALLKQNNPRLADALSSNKIEEFS 159

Query: 87  RILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGS 146
           +++ +Q EER+KRE  R RM+ A PFD+EAQKLIAEEI++ NI+ANMEAAMEYNPE FG+
Sbjct: 160 KVMAEQMEERKKREDQRIRMMKAHPFDSEAQKLIAEEIRQKNIEANMEAAMEYNPEMFGT 219

Query: 147 VIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIG 206
           V+MLYINC+V+G+PVKAFIDSGAQTTIMS+ACA R NI RL+D+RWAG+AKGVGVQ+IIG
Sbjct: 220 VVMLYINCKVDGYPVKAFIDSGAQTTIMSSACAERCNIMRLVDSRWAGLAKGVGVQKIIG 279

Query: 207 RIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           RIHMVQ+AIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ  I +E++ L
Sbjct: 280 RIHMVQVAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQCCIDLEHNVL 328

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020373|ref|XP_003694061.1| PREDICTED: protein DDI1 homolog 2-like [Apis florea]

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 158/333 (47%), Positives = 201/333 (60%), Gaps = 78/333 (23%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           MKVTVT+L ++ F+LDV ED+ELE+FKA CE++S +   E+ I F G  L+++KK+LKD+
Sbjct: 1   MKVTVTTLSDDIFVLDVIEDMELESFKALCEIESNVPVHEMVIAFNGLPLMNDKKSLKDH 60

Query: 61  NIQDGDLVLLKR------------------------VQVARTSN---PSDDFARILRQQY 93
            I+DGD+V+L+                         + V   SN   PS   + I R Q 
Sbjct: 61  GIRDGDVVILQHMHQSGAELNLHPFNGAIPMLDFSSITVPGASNSRQPSASSSTIARMQN 120

Query: 94  EEREKREQLRQRMLTADP------------------------------------------ 111
             +E   ++ + M  A+P                                          
Sbjct: 121 PRKEDDPEIIRDMFLANPDQLALLSQNNPKLASALLSGNLEKFTTVLREQIKLREEREAQ 180

Query: 112 ---------FDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVK 162
                    FDTEAQ+ IAE+I++ NI+ANMEAAMEYNPETFGSV+MLYINC+VNG PVK
Sbjct: 181 RLRMMNADPFDTEAQRFIAEDIRQKNIEANMEAAMEYNPETFGSVVMLYINCKVNGFPVK 240

Query: 163 AFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTT 222
           AFID+GAQ+TIMS ACA R +I RL+D+RWAGIA GVG QRIIGRIHMVQI I ND LTT
Sbjct: 241 AFIDTGAQSTIMSDACAERCHIMRLVDSRWAGIAHGVGTQRIIGRIHMVQIQIGNDHLTT 300

Query: 223 SFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           SF+VL +Q MDMLLGLDMLKRHQ  I ++ + L
Sbjct: 301 SFTVLAEQSMDMLLGLDMLKRHQCCIDLKKNVL 333

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110759016|ref|XP_624431.2| PREDICTED: protein DDI1 homolog 2-like [Apis mellifera]

 Score =  293 bits (749), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 158/333 (47%), Positives = 201/333 (60%), Gaps = 78/333 (23%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           MKVTVT+L ++ F+LDV ED+ELE+FKA CE++S +   E+ I F G  L+++KK+LKD+
Sbjct: 1   MKVTVTTLSDDIFVLDVIEDMELESFKALCEIESNVPVHEMVIAFNGLPLMNDKKSLKDH 60

Query: 61  NIQDGDLVLLKR------------------------VQVARTSN---PSDDFARILRQQY 93
            I+DGD+V+L+                         + V   SN   PS   + I R Q 
Sbjct: 61  GIRDGDVVILQHMHQSGAELNLHPFNGAIPMLDFSSITVPGASNSRQPSASSSTIARMQN 120

Query: 94  EEREKREQLRQRMLTADP------------------------------------------ 111
             +E   ++ + M  A+P                                          
Sbjct: 121 PRKEDDPEIIRDMFLANPDQLALLSQNNPKLASALLSGNLEKFTTVLREQIKLREEREAQ 180

Query: 112 ---------FDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVK 162
                    FDTEAQ+ IAE+I++ NI+ANMEAAMEYNPETFGSV+MLYINC+VNG PVK
Sbjct: 181 RLRMMNADPFDTEAQRFIAEDIRQKNIEANMEAAMEYNPETFGSVVMLYINCKVNGFPVK 240

Query: 163 AFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTT 222
           AFID+GAQ+TIMS ACA R +I RL+D+RWAGIA GVG QRIIGRIHMVQI I ND LTT
Sbjct: 241 AFIDTGAQSTIMSDACAERCHIMRLVDSRWAGIAHGVGTQRIIGRIHMVQIQIGNDHLTT 300

Query: 223 SFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           SF+VL +Q MDMLLGLDMLKRHQ  I ++ + L
Sbjct: 301 SFTVLAEQSMDMLLGLDMLKRHQCCIDLKKNVL 333

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729851|ref|XP_003403208.1| PREDICTED: protein DDI1 homolog 2-like [Bombus terrestris]

 Score =  292 bits (748), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 158/333 (47%), Positives = 202/333 (60%), Gaps = 78/333 (23%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           MKVTVT+L ++ F+LDV ED+ELE+FKA CE++S +   E+ I F G  L+++KK+LKD+
Sbjct: 1   MKVTVTTLSDDIFVLDVIEDMELESFKALCEIESNVPVHEMVIAFNGLPLMNDKKSLKDH 60

Query: 61  NIQDGDLVLLK--------------------------RVQVARTS-NPSDDFARILRQQY 93
            I+DGD+V+L+                          RV  A +S  P+   + I R Q 
Sbjct: 61  GIRDGDVVILQHMHQSGAELNLHPLNGAIPMLDFSSIRVPGASSSRQPTASSSTIARMQN 120

Query: 94  EEREKREQLRQRMLTADP------------------------------------------ 111
             +E   ++ + M  A+P                                          
Sbjct: 121 PRKEDDPEIIRDMFLANPDQLALLSQNNPKLASALLSGNLERFTTVLREQIKVREEREAQ 180

Query: 112 ---------FDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVK 162
                    FDTEAQ+ IAE+I++ NI+ANMEAAMEYNPETFGSV+MLY+NC+VNG PVK
Sbjct: 181 RLRMMNADPFDTEAQRFIAEDIRQKNIEANMEAAMEYNPETFGSVVMLYVNCKVNGFPVK 240

Query: 163 AFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTT 222
           AFID+GAQ+TIMS ACA R +I RL+DTRWAGIA GVG QRIIGRIHMVQI I ND LTT
Sbjct: 241 AFIDTGAQSTIMSDACAERCHIMRLVDTRWAGIAHGVGTQRIIGRIHMVQIQIGNDHLTT 300

Query: 223 SFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
           SF+VL +Q MDMLLGLDMLKRHQ  I ++ + L
Sbjct: 301 SFTVLAEQSMDMLLGLDMLKRHQCCIDLKKNVL 333

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	280
UNIPROTKB|E1C2C2	332	DDI2 "Uncharacterized protein"	0.707	0.596	0.551	1.8e-66
UNIPROTKB|F6XP41	400	DDI1 "Uncharacterized protein"	0.678	0.475	0.582	7.7e-66
UNIPROTKB|F1SV49	401	DDI1 "Uncharacterized protein"	0.678	0.473	0.572	9.8e-66
UNIPROTKB|F1MG01	396	DDI1 "Protein DDI1 homolog 1"	0.678	0.479	0.556	5.4e-65
UNIPROTKB|Q2T9Z1	396	DDI1 "Protein DDI1 homolog 1"	0.678	0.479	0.556	1.4e-64
UNIPROTKB|Q8WTU0	396	DDI1 "Protein DDI1 homolog 1"	0.678	0.479	0.567	1.6e-63
RGD|1559430	408	Ddi1 "DNA-damage inducible 1 h	0.678	0.465	0.551	3.3e-63
MGI|MGI:1919079	408	Ddi1 "DDI1, DNA-damage inducib	0.678	0.465	0.536	3.7e-62
FB|FBgn0030753	458	rngo "rings lost" [Drosophila	0.753	0.460	0.562	1.8e-55
UNIPROTKB|F1SUU7	399	DDI2 "Uncharacterized protein"	0.785	0.551	0.535	3.7e-55

UNIPROTKB|E1C2C2 DDI2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 548 (198.0 bits), Expect = 1.8e-66, Sum P(2) = 1.8e-66
 Identities = 112/203 (55%), Positives = 138/203 (67%)

Query:    51 VDNKKTLKDYNIQDG-DLVLLKR----VQVARTSNPSDDFARILXXXXXXXXXXXXXXXX 105
             ++N   L++  + +  +L LLK     +  A  S   D F R+L                
Sbjct:   130 LENPALLREMLLANPHELSLLKERNPPLAEALLSGDLDKFTRVLLEQQQDRARREQERIR 189

Query:   106 MLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFI 165
             + +ADPFD EAQ  I E+I++ NI+ NM  AME  PE+FG V+MLYINC+VNGHPVKAF+
Sbjct:   190 LYSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQVVMLYINCKVNGHPVKAFV 249

Query:   166 DSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFS 225
             DSGAQ TIMS ACA R NI RL+D RWAGIAKGVG Q+IIGR+H+ Q+ IE DFL  SFS
Sbjct:   250 DSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGRVHLAQVQIEGDFLACSFS 309

Query:   226 VLEDQPMDMLLGLDMLKRHQVQI 248
             +LE+QPMDMLLGLDMLKRHQ  I
Sbjct:   310 ILEEQPMDMLLGLDMLKRHQCSI 332

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F6XP41 DDI1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 552 (199.4 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 113/194 (58%), Positives = 133/194 (68%)

Query:    66 DLVLLKR----VQVARTSNPSDDFARILXXXXXXXXXXXXXXXXMLTADPFDTEAQKLIA 121
             DL LLK     +  A  S   D F+ +L                + TADPFD EAQ  I 
Sbjct:   154 DLSLLKERNPPLAEALLSGNLDTFSHVLMEQQRERALREQERLRLYTADPFDLEAQAKIE 213

Query:   122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
             EEI++ NI+ NM  AME  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct:   214 EEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 273

Query:   182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
              NI RL+D RWAGIAKGVG QRIIGR+H+ QI IE DFL  SFS+LE+QPMDMLLGLDML
Sbjct:   274 CNIIRLVDRRWAGIAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDML 333

Query:   242 KRHQVQIAIENDFL 255
             +RHQ  I ++ + L
Sbjct:   334 RRHQCSIDLKKNVL 347

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1SV49 DDI1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 544 (196.6 bits), Expect = 9.8e-66, Sum P(2) = 9.8e-66
 Identities = 111/194 (57%), Positives = 134/194 (69%)

Query:    66 DLVLLKR----VQVARTSNPSDDFARILXXXXXXXXXXXXXXXXMLTADPFDTEAQKLIA 121
             DL LLK     +  A  S   + F+++L                + +ADPFD EAQ  I 
Sbjct:   155 DLSLLKERNPALAEALLSGNLETFSQVLMEQQRERVLREQERFRLYSADPFDLEAQAKIE 214

Query:   122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
             EEI++ NI+ NM  AME  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct:   215 EEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 274

Query:   182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
              NI RL+D RWAGIAKGVG QRIIGR+H+ QI IE DFL  SFS+LE+QPMDMLLGLDML
Sbjct:   275 CNIIRLVDRRWAGIAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDML 334

Query:   242 KRHQVQIAIENDFL 255
             +RHQ  I ++ + L
Sbjct:   335 RRHQCSIDLKKNVL 348

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|F1MG01 DDI1 "Protein DDI1 homolog 1" [Bos taurus (taxid:9913)]

 Score = 540 (195.1 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 108/194 (55%), Positives = 133/194 (68%)

Query:    66 DLVLLKR----VQVARTSNPSDDFARILXXXXXXXXXXXXXXXXMLTADPFDTEAQKLIA 121
             DL LLK     +  A  S   + F+++L                + +ADPFD EAQ  I 
Sbjct:   150 DLSLLKERNPSLAEALLSGNLESFSQVLMEQQRERALREQERLRLFSADPFDLEAQAKIE 209

Query:   122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
             EEI++ NI+ NM  AME  PE+FG V MLYINCRVNGHP+KAF+DSGAQ TIM+  CA R
Sbjct:   210 EEIRQQNIEENMSIAMEEAPESFGQVAMLYINCRVNGHPLKAFVDSGAQMTIMNQVCAER 269

Query:   182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
              NI RL+D RWAG+AKGVG QRI+GR+H+ QI IE DFL  SFS+LE+QPMDMLLGLDML
Sbjct:   270 CNIIRLVDRRWAGVAKGVGTQRILGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDML 329

Query:   242 KRHQVQIAIENDFL 255
             +RHQ  I ++ + L
Sbjct:   330 RRHQCSIDLKRNVL 343

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q2T9Z1 DDI1 "Protein DDI1 homolog 1" [Bos taurus (taxid:9913)]

 Score = 540 (195.1 bits), Expect = 1.4e-64, Sum P(2) = 1.4e-64
 Identities = 108/194 (55%), Positives = 133/194 (68%)

Query:    66 DLVLLKR----VQVARTSNPSDDFARILXXXXXXXXXXXXXXXXMLTADPFDTEAQKLIA 121
             DL LLK     +  A  S   + F+++L                + +ADPFD EAQ  I 
Sbjct:   150 DLSLLKERNPSLAEALLSGNLESFSQVLMEQQRERALREQERLRLFSADPFDLEAQAKIE 209

Query:   122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
             EEI++ NI+ NM  AME  PE+FG V MLYINCRVNGHP+KAF+DSGAQ TIM+  CA R
Sbjct:   210 EEIRQQNIEENMSIAMEEAPESFGQVAMLYINCRVNGHPLKAFVDSGAQMTIMNQVCAER 269

Query:   182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
              NI RL+D RWAG+AKGVG QRI+GR+H+ QI IE DFL  SFS+LE+QPMDMLLGLDML
Sbjct:   270 CNIIRLVDRRWAGVAKGVGTQRILGRVHLAQIQIEGDFLQCSFSILEEQPMDMLLGLDML 329

Query:   242 KRHQVQIAIENDFL 255
             +RHQ  I ++ + L
Sbjct:   330 RRHQCSIDLKRNVL 343

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

UNIPROTKB|Q8WTU0 DDI1 "Protein DDI1 homolog 1" [Homo sapiens (taxid:9606)]

 Score = 543 (196.2 bits), Expect = 1.6e-63, Sum P(2) = 1.6e-63
 Identities = 110/194 (56%), Positives = 133/194 (68%)

Query:    66 DLVLLKR----VQVARTSNPSDDFARILXXXXXXXXXXXXXXXXMLTADPFDTEAQKLIA 121
             DL LLK     +  A  S   + F+++L                + TADP D EAQ  I 
Sbjct:   156 DLSLLKERNPPLAEALLSGSLETFSQVLMEQQREKALREQERLRLYTADPLDREAQAKIE 215

Query:   122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
             EEI++ NI+ NM  A+E  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct:   216 EEIRQQNIEENMNIAIEEAPESFGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 275

Query:   182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
              NI RL+D RWAG+AKGVG QRIIGR+H+ QI IE DFL  SFS+LEDQPMDMLLGLDML
Sbjct:   276 CNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDML 335

Query:   242 KRHQVQIAIENDFL 255
             +RHQ  I ++ + L
Sbjct:   336 RRHQCSIDLKKNVL 349

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1559430 Ddi1 "DNA-damage inducible 1 homolog 1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 533 (192.7 bits), Expect = 3.3e-63, Sum P(2) = 3.3e-63
 Identities = 107/194 (55%), Positives = 133/194 (68%)

Query:    66 DLVLLKR----VQVARTSNPSDDFARILXXXXXXXXXXXXXXXXMLTADPFDTEAQKLIA 121
             DL LLK     +  A  S   + F+++L                + +ADPFD E Q  I 
Sbjct:   162 DLSLLKERNPALAEALLSGNLETFSQVLVEQQRERAMREQEMFRLYSADPFDQETQARIE 221

Query:   122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
             EEI++ NI+ NM  AME  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct:   222 EEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 281

Query:   182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
              NI RL+D RWAG+AKGVG QRI+GR+H+ QI IE DFL  SFS+LE+QPMD+LLGLDML
Sbjct:   282 CNIMRLVDRRWAGVAKGVGTQRIMGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDML 341

Query:   242 KRHQVQIAIENDFL 255
             +RHQ  I ++ + L
Sbjct:   342 RRHQCSIDLKKNVL 355

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

MGI|MGI:1919079 Ddi1 "DDI1, DNA-damage inducible 1, homolog 1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 520 (188.1 bits), Expect = 3.7e-62, Sum P(2) = 3.7e-62
 Identities = 104/194 (53%), Positives = 131/194 (67%)

Query:    66 DLVLLKR----VQVARTSNPSDDFARILXXXXXXXXXXXXXXXXMLTADPFDTEAQKLIA 121
             DL LLK     +  A  S   + F+++L                + + +PFD E Q  I 
Sbjct:   162 DLSLLKERNPALAEALLSGNLETFSQVLMEQQRERTLREQEMFRLYSTNPFDQETQARIE 221

Query:   122 EEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAAR 181
             EEI++ NI+ NM  AME  PE+FG V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R
Sbjct:   222 EEIRQQNIEENMNIAMEEAPESFGQVAMLYINCKVNGHPLKAFVDSGAQMTIMSQACAER 281

Query:   182 VNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDML 241
              NI RL+D RW G+AKGVG QRI+GR+H+ QI IE DFL  SFS+LE+QPMD+LLGLDML
Sbjct:   282 CNIMRLVDRRWGGVAKGVGTQRIMGRVHLAQIQIEGDFLQCSFSILEEQPMDILLGLDML 341

Query:   242 KRHQVQIAIENDFL 255
             +RHQ  I ++ + L
Sbjct:   342 RRHQCSIDLKKNVL 355

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

FB|FBgn0030753 rngo "rings lost" [Drosophila melanogaster (taxid:7227)]

 Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
 Identities = 122/217 (56%), Positives = 149/217 (68%)

Query:    44 EFQGNALVDNKKTLKDYNIQDGD-LVLLKR----VQVARTSNPSDDFARILXXXXXXXXX 98
             EF  N   D+ +T++   +   + L LL++    +  A  S   + FAR+L         
Sbjct:   131 EFNVN-FDDDPETVRQMFLSSPETLSLLRQYNPSLAEAIDSGDKEKFARLLREHITERKR 189

Query:    99 XXXXXXXMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNG 158
                    ML ADPFD E Q+LIAEEIK+ NIQ NM AA+EYNPE FG+V MLYINC+VNG
Sbjct:   190 RNEHRMRMLNADPFDEETQRLIAEEIKQKNIQDNMAAAIEYNPEIFGTVTMLYINCKVNG 249

Query:   159 HPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIEND 218
              PVKAF+DSGAQTTIMS  CA R ++ RLIDTRW G+AKGVG Q I+GRIHMVQ+ IEND
Sbjct:   250 IPVKAFVDSGAQTTIMSKDCAERCHVNRLIDTRWNGVAKGVGTQPILGRIHMVQLQIEND 309

Query:   219 FLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
              LT+SF+VL  QPMDMLLGLDMLKRHQ  I ++ + L
Sbjct:   310 HLTSSFTVLGQQPMDMLLGLDMLKRHQCLIDLQRNLL 346

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0007301 "female germline ring canal formation" evidence=IMP

GO:0070628 "proteasome binding" evidence=IPI

UNIPROTKB|F1SUU7 DDI2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 122/228 (53%), Positives = 151/228 (66%)

Query:    33 QSGISAQEIAIEFQGNALVDNKKTLKDYNIQDG-DLVLLKR----VQVARTSNPSDDFAR 87
             QS  S  EIA   QG   +DN   L+D  + +  +L LLK     +  A  S   + F+R
Sbjct:   117 QSHSSPGEIASSPQG---LDNPALLRDMLLANPHELSLLKERNPPLADALLSGDLEKFSR 173

Query:    88 ILXXXXXXXXXXXXXXXXMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSV 147
             +L                + +ADPFD EAQ  I E+I++ NI+ NM  AME  PE+FG V
Sbjct:   174 VLVEQQQDRARREQERIRLFSADPFDLEAQAKIEEDIRQQNIEENMTIAMEEAPESFGQV 233

Query:   148 IMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGR 207
             +MLYINC+VNGHPVKAF+DSGAQ TIMS ACA R NI RL+D RWAGIAKGVG Q+IIGR
Sbjct:   234 VMLYINCKVNGHPVKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGIAKGVGTQKIIGR 293

Query:   208 IHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
             +H+ Q+ IE DFL  SFS+LE+QPMDMLLGLDMLKRHQ  I ++ + L
Sbjct:   294 VHLAQVQIEGDFLACSFSILEEQPMDMLLGLDMLKRHQCSIDLKKNVL 341

GO:0006508 "proteolysis" evidence=IEA

GO:0004190 "aspartic-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0CS14	DDI1_CRYNJ	No assigned EC number	0.5103	0.6464	0.4170	yes	N/A
Q6TH22	DDI2_DANRE	No assigned EC number	0.5506	0.7571	0.5158	yes	N/A
Q5TDH0	DDI2_HUMAN	No assigned EC number	0.5614	0.7857	0.5513	yes	N/A
A0JPP7	DDI1_RAT	No assigned EC number	0.5876	0.6785	0.4656	yes	N/A
Q6CFI3	DDI1_YARLI	No assigned EC number	0.3052	0.9035	0.6372	yes	N/A
A2ADY9	DDI2_MOUSE	No assigned EC number	0.5669	0.7714	0.5413	yes	N/A
Q754R2	DDI1_ASHGO	No assigned EC number	0.5167	0.5285	0.3135	yes	N/A
Q497D6	DDI2_XENTR	No assigned EC number	0.6358	0.6035	0.4289	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	280
pfam09668	124	pfam09668, Asp_protease, Aspartyl protease	2e-72
cd05479	124	cd05479, RP_DDI, RP_DDI; retropepsin-like domain o	2e-68
cd01796	71	cd01796, DDI1_N, DNA damage inducible protein 1 ub	4e-18
cd00303	92	cd00303, retropepsin_like, Retropepsins; pepsin-li	7e-15
cd01769	69	cd01769, UBL, Ubiquitin-like domain of UBL	5e-08
pfam13650	89	pfam13650, Asp_protease_2, Aspartyl protease	1e-07
pfam00240	69	pfam00240, ubiquitin, Ubiquitin family	2e-06
cd05480	103	cd05480, NRIP_C, NRIP_C; putative nuclear receptor	1e-05
cd05483	96	cd05483, retropepsin_like_bacteria, Bacterial aspa	2e-05
smart00213	72	smart00213, UBQ, Ubiquitin homologues	2e-05
pfam11976	72	pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-	4e-04
pfam00077	99	pfam00077, RVP, Retroviral aspartyl protease	7e-04
pfam13975	72	pfam13975, gag-asp_proteas, gag-polyprotein putati	8e-04
cd01809	72	cd01809, Scythe_N, Ubiquitin-like domain of Scythe	0.001

>gnl|CDD|118200 pfam09668, Asp_protease, Aspartyl protease

 Score =  217 bits (556), Expect = 2e-72
 Identities = 76/123 (61%), Positives = 94/123 (76%)

Query: 126 KSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNIT 185
           + N+  N+E AME+ PE FG V MLYINC VNG PVKAF+DSGAQT+IMS  CA R  I 
Sbjct: 1   QENVDENLEHAMEHTPEAFGRVTMLYINCEVNGVPVKAFVDSGAQTSIMSPRCAERCGIM 60

Query: 186 RLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ 245
           RL+DTR+AGIA+GVG  +I+GR+HM  + + + FL  SF+V+EDQ MD+L GLDMLKRHQ
Sbjct: 61  RLLDTRFAGIARGVGTAKILGRVHMADLKLGDLFLPCSFTVIEDQDMDLLFGLDMLKRHQ 120

Query: 246 VQI 248
             I
Sbjct: 121 CCI 123

This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover. Length = 124

>gnl|CDD|133146 cd05479, RP_DDI, RP_DDI; retropepsin-like domain of DNA damage inducible protein

 Score =  207 bits (530), Expect = 2e-68
 Identities = 74/123 (60%), Positives = 93/123 (75%)

Query: 134 EAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWA 193
           + AME++PE+FG V MLYIN  +NG PVKAF+DSGAQ TIMS ACA +  + RLID R+ 
Sbjct: 1   QNAMEHHPESFGKVPMLYINVEINGVPVKAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQ 60

Query: 194 GIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIEND 253
           GIAKGVG Q+I+GRIH+ Q+ I N FL  SF+VLED  +D L+GLDMLKRHQ  I ++ +
Sbjct: 61  GIAKGVGTQKILGRIHLAQVKIGNLFLPCSFTVLEDDDVDFLIGLDMLKRHQCVIDLKEN 120

Query: 254 FLT 256
            L 
Sbjct: 121 VLR 123

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI. Length = 124

>gnl|CDD|176391 cd01796, DDI1_N, DNA damage inducible protein 1 ubiquitin-like domain

 Score = 76.3 bits (188), Expect = 4e-18
 Identities = 36/71 (50%), Positives = 48/71 (67%), Gaps = 1/71 (1%)

Query: 3  VTV-TSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYN 61
          +TV T+     F LDV  DLELENFKA CE +SGI A +  + + G  LVDNK+ L  Y 
Sbjct: 1  ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYG 60

Query: 62 IQDGDLVLLKR 72
          ++DGDLV+L++
Sbjct: 61 VKDGDLVVLRQ 71

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1. Length = 71

>gnl|CDD|133136 cd00303, retropepsin_like, Retropepsins; pepsin-like aspartate proteases

 Score = 68.1 bits (167), Expect = 7e-15
 Identities = 25/92 (27%), Positives = 43/92 (46%), Gaps = 1/92 (1%)

Query: 152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVG-VQRIIGRIHM 210
           +  ++NG PV+A +DSGA    +S + A ++ +   +      +    G   + +G I  
Sbjct: 1   LKGKINGVPVRALVDSGASVNFISESLAKKLGLPPRLLPTPLKVKGANGSSVKTLGVILP 60

Query: 211 VQIAIENDFLTTSFSVLEDQPMDMLLGLDMLK 242
           V I I     T  F VL+    D++LG   L+
Sbjct: 61  VTIGIGGKTFTVDFYVLDLLSYDVILGRPWLE 92

The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A. Length = 92

>gnl|CDD|176364 cd01769, UBL, Ubiquitin-like domain of UBL

 Score = 48.8 bits (117), Expect = 5e-08
 Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 2/70 (2%)

Query: 4  TVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQ 63
          TV +L  + F L+VS D  +   KA    + G+  ++  + + G  L D+ KTL DY IQ
Sbjct: 1  TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDD-KTLSDYGIQ 59

Query: 64 DGD-LVLLKR 72
          DG  L L+ R
Sbjct: 60 DGSTLHLVLR 69

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways. Length = 69

>gnl|CDD|222288 pfam13650, Asp_protease_2, Aspartyl protease

 Score = 48.1 bits (115), Expect = 1e-07
 Identities = 21/90 (23%), Positives = 37/90 (41%), Gaps = 4/90 (4%)

Query: 152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMV 211
           +   +NG PV+  +D+GA  T++S + A R+ +         G             + + 
Sbjct: 1   VPVTINGKPVRFLLDTGASGTLLSRSLAERLGLK--PTKLTIGRVSTANGTVRAALVRLD 58

Query: 212 QIAIENDFLT-TSFSVLEDQPM-DMLLGLD 239
            + I    L      VL+   + D LLG+D
Sbjct: 59  SLKIGGITLRNVPAVVLDLGDLIDGLLGMD 88

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Length = 89

>gnl|CDD|215813 pfam00240, ubiquitin, Ubiquitin family

 Score = 44.5 bits (106), Expect = 2e-06
 Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 8  LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDL 67
          LD +   L+V     +   K   E + GI   +  + F G  L D+  TL +Y IQDG  
Sbjct: 3  LDGKTITLEVDPSDTVSELKEKIEDKEGIPVDQQRLIFSGKVLEDD-TTLSEYGIQDGST 61

Query: 68 VLL 70
          + L
Sbjct: 62 LHL 64

This family contains a number of ubiquitin-like proteins: SUMO (smt3 homologue), Nedd8, Elongin B, Rub1, and Parkin. A number of them are thought to carry a distinctive five-residue motif termed the proteasome-interacting motif (PIM), which may have a biologically significant role in protein delivery to proteasomes and recruitment of proteasomes to transcription sites. Length = 69

>gnl|CDD|133147 cd05480, NRIP_C, NRIP_C; putative nuclear receptor interacting protein

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 26/102 (25%), Positives = 53/102 (51%), Gaps = 2/102 (1%)

Query: 152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNI-TRLIDTRWAGIAKGVGVQ-RIIGRIH 209
           ++C+  G  ++A +D+G Q  ++SAAC  R+ +  R++  +    A  +    ++IG+I 
Sbjct: 1   VSCQCAGKELRALVDTGCQYNLISAACLDRLGLKERVLKAKAEEEAPSLPTSVKVIGQIE 60

Query: 210 MVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIE 251
            + + +    +  S  V++D   +  LGL  LK  +  I +E
Sbjct: 61  RLVLQLGQLTVECSAQVVDDNEKNFSLGLQTLKSLKCVINLE 102

Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A. Length = 103

>gnl|CDD|133150 cd05483, retropepsin_like_bacteria, Bacterial aspartate proteases, retropepsin-like protease family

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 19/104 (18%)

Query: 149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNIT-RLIDTRWAGIAKG------VGV 201
              +   +NG PV+  +D+GA TT++S   A R+ +   L        A G      V +
Sbjct: 2   HFVVPVTINGQPVRFLLDTGASTTVISEELAERLGLPLTLGGKVTVQTANGRVRAARVRL 61

Query: 202 QRI-IGRIHMVQIAIENDFLTTSFSVLEDQPM--DMLLGLDMLK 242
             + IG I +  +            VL    +  D LLG+D L+
Sbjct: 62  DSLQIGGITLRNVPA---------VVLPGDALGVDGLLGMDFLR 96

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A. Length = 96

>gnl|CDD|214563 smart00213, UBQ, Ubiquitin homologues

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 1/70 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          +++TV +LD +   L+V     +   K      +GI  ++  + ++G  L D++ TL DY
Sbjct: 1  IELTVKTLDGKTITLEVKPSDTVSELKEKIAELTGIPPEQQRLIYKGKVLEDDR-TLADY 59

Query: 61 NIQDGDLVLL 70
           IQDG  + L
Sbjct: 60 GIQDGSTIHL 69

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression. Length = 72

>gnl|CDD|192903 pfam11976, Rad60-SLD, Ubiquitin-2 like Rad60 SUMO-like

 Score = 37.9 bits (89), Expect = 4e-04
 Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 4/70 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFK-AFCEVQSGISA-QEIAIEFQGNALVDNKKTLK 58
          +++ +   D +   + V     L     A+ + + GI A Q++ + F G  L  N  T+ 
Sbjct: 1  IRIKLKGKDGKEVFIKVKPTTTLSKLINAYRKKR-GIPADQQVRLIFDGERLDPND-TVA 58

Query: 59 DYNIQDGDLV 68
          DY+I+DGD +
Sbjct: 59 DYDIEDGDTI 68

The small ubiquitin-related modifier SUMO-1 is a Ub/Ubl family member, and although SUMO-1 shares structural similarity to Ub, SUMO's cellular functions remain distinct insomuch as SUMO modification alters protein function through changes in activity, cellular localisation, or by protecting substrates from ubiquitination. Rad60 family members contain functionally enigmatic, integral SUMO-like domains (SLDs). Despite their divergence from SUMO, each Rad60 SLD interacts with a subset of SUMO pathway enzymes: SLD2 specifically binds the SUMO E2 conjugating enzyme (Ubc9)), whereas SLD1 binds the SUMO E1 (Fub2, also called Uba2) activating and E3 (Pli1, also called Siz1 and Siz2) specificity enzymes. Structural analysis of PDB:2uyz reveals a mechanistic basis for the near-synonymous roles of Rad60 and SUMO in survival of genotoxic stress and suggest unprecedented DNA-damage-response functions for SLDs in regulating SUMOylation. The Rad60 branch of this family is also known as RENi (Rad60-Esc2-Nip45), and biologically it should be two distinct families SUMO and RENi (Rad60-Esc2-Nip45). Length = 72

>gnl|CDD|215697 pfam00077, RVP, Retroviral aspartyl protease

 Score = 38.0 bits (89), Expect = 7e-04
 Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 16/103 (15%)

Query: 151 YINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIH- 209
            I  +V G P+KA +D+GA  T++             +   W        +  I G+I  
Sbjct: 7   RITVKVGGQPIKALLDTGADDTVIP---------ENDLPGSW-PPWGPTTIGGIGGQIRV 56

Query: 210 ----MVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQI 248
                + + I       +F VL   P++ +LG D+L +   ++
Sbjct: 57  KQSIQILVEIGGKKFRGTFLVLPSTPVN-ILGRDLLTQLGAKL 98

Single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases such as pepsins, cathepsins, and renins (pfam00026). Length = 99

>gnl|CDD|206145 pfam13975, gag-asp_proteas, gag-polyprotein putative aspartyl protease

 Score = 36.9 bits (86), Expect = 8e-04
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 150 LYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDT 190
           + +   + G  VKA +D+GA  + +S + AAR+ +    D 
Sbjct: 9   VTVEVSIGGVEVKALVDTGATHSFISESLAARLGLPLEADQ 49

This family of putative aspartyl proteases is found pre-dominantly in retroviral proteins. Length = 72

>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 19/73 (26%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          +++ V +LD++     V E++ + + K     + GI  ++  + + G  L D+ +TL +Y
Sbjct: 1  IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDD-ETLSEY 59

Query: 61 NIQDGDLV-LLKR 72
           ++DG  + L+KR
Sbjct: 60 KVEDGHTIHLVKR 72

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules. Length = 72

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	280
KOG0012|consensus	380		100.0
PF09668	124	Asp_protease: Aspartyl protease; InterPro: IPR0191	100.0
cd05480	103	NRIP_C NRIP_C; putative nuclear receptor interacti	100.0
cd05479	124	RP_DDI RP_DDI; retropepsin-like domain of DNA dama	99.97
PF08284	135	RVP_2: Retroviral aspartyl protease; InterPro: IPR	99.84
cd01807	74	GDX_N ubiquitin-like domain of GDX. GDX contains a	99.81
cd01797	78	NIRF_N amino-terminal ubiquitin-like domain of Np9	99.78
cd01793	74	Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui	99.78
PTZ00044	76	ubiquitin; Provisional	99.76
cd01791	73	Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know	99.75
TIGR02281	121	clan_AA_DTGA clan AA aspartic protease, TIGR02281	99.75
cd01805	77	RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo	99.74
cd01796	71	DDI1_N DNA damage inducible protein 1 ubiquitin-li	99.74
cd01810	74	ISG15_repeat2 ISG15 ubiquitin-like protein, second	99.74
cd01806	76	Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn	99.73
cd01802	103	AN1_N ubiquitin-like domain of AN1. AN1 (also know	99.73
cd01798	70	parkin_N amino-terminal ubiquitin-like of parkin p	99.73
cd01803	76	Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40	99.72
cd01804	78	midnolin_N Ubiquitin-like domain of midnolin. midn	99.72
cd01809	72	Scythe_N Ubiquitin-like domain of Scythe protein.	99.71
cd01792	80	ISG15_repeat1 ISG15 ubiquitin-like protein, first	99.71
cd01794	70	DC_UbP_C dendritic cell derived ubiquitin-like pro	99.7
cd01808	71	hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC	99.68
cd05484	91	retropepsin_like_LTR_2 Retropepsins_like_LTR, peps	99.67
PF00240	69	ubiquitin: Ubiquitin family; InterPro: IPR000626 U	99.67
cd01812	71	BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter	99.64
cd01790	79	Herp_N Homocysteine-responsive endoplasmic reticul	99.64
PF13650	90	Asp_protease_2: Aspartyl protease	99.62
cd01800	76	SF3a120_C Ubiquitin-like domain of Mammalian splic	99.62
cd05483	96	retropepsin_like_bacteria Bacterial aspartate prot	99.61
cd01813	74	UBP_N UBP ubiquitin processing protease. The UBP (	99.6
KOG0005|consensus	70		99.57
TIGR00601	378	rad23 UV excision repair protein Rad23. All protei	99.56
PF00077	100	RVP: Retroviral aspartyl protease The Prosite entr	99.56
smart00213	64	UBQ Ubiquitin homologues. Ubiquitin-mediated prote	99.56
KOG0003|consensus	128		99.54
cd01799	75	Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO	99.54
cd01763	87	Sumo Small ubiquitin-related modifier (SUMO). Smal	99.51
cd06095	86	RP_RTVL_H_like Retropepsin of the RTVL_H family of	99.51
cd01815	75	BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC	99.5
KOG0004|consensus	156		99.47
KOG0010|consensus	493		99.44
TIGR03698	107	clan_AA_DTGF clan AA aspartic protease, AF_0612 fa	99.41
KOG0011|consensus	340		99.41
cd01795	107	USP48_C USP ubiquitin-specific protease. The USP (	99.35
cd01769	69	UBL Ubiquitin-like domain of UBL. UBLs function by	99.34
COG3577	215	Predicted aspartyl protease [General function pred	99.3
PF11976	72	Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter	99.27
cd00303	92	retropepsin_like Retropepsins; pepsin-like asparta	99.22
cd01789	84	Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol	99.17
cd01814	113	NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and AT	99.16
PF13975	72	gag-asp_proteas: gag-polyprotein putative aspartyl	99.0
cd05481	93	retropepsin_like_LTR_1 Retropepsins_like_LTR; peps	99.0
PF12384	177	Peptidase_A2B: Ty3 transposon peptidase; InterPro:	98.94
PF14560	87	Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K	98.91
KOG4248|consensus	1143		98.91
PLN02560	308	enoyl-CoA reductase	98.88
KOG0001|consensus	75		98.84
PF11543	80	UN_NPL4: Nuclear pore localisation protein NPL4; I	98.71
COG5550	125	Predicted aspartyl protease [Posttranslational mod	98.66
cd01801	77	Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-	98.64
cd05480	103	NRIP_C NRIP_C; putative nuclear receptor interacti	98.57
cd00196	69	UBQ Ubiquitin-like proteins. Ubiquitin homologs; I	98.54
PF02160	201	Peptidase_A3: Cauliflower mosaic virus peptidase (	98.46
cd01788	119	ElonginB Ubiquitin-like domain of Elongin B. Elong	98.45
PF13881	111	Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB	98.4
cd06094	89	RP_Saci_like RP_Saci_like, retropepsin family. Ret	98.38
cd05482	87	HIV_retropepsin_like Retropepsins, pepsin-like asp	98.37
PF05585	164	DUF1758: Putative peptidase (DUF1758); InterPro: I	98.33
KOG0006|consensus	446		97.79
cd01811	80	OASL_repeat1 2'-5' oligoadenylate synthetase-like	97.79
PF08817	79	YukD: WXG100 protein secretion system (Wss), prote	97.75
KOG1872|consensus	473		97.73
PF09668	124	Asp_protease: Aspartyl protease; InterPro: IPR0191	97.51
PF00789	82	UBX: UBX domain; InterPro: IPR001012 The UBX domai	97.32
KOG1769|consensus	99		97.3
KOG0012|consensus	380		97.21
KOG4495|consensus	110		97.15
KOG3206|consensus	234		97.14
smart00166	80	UBX Domain present in ubiquitin-regulatory protein	97.08
PF13019	162	Telomere_Sde2: Telomere stability and silencing	96.97
COG5417	81	Uncharacterized small protein [Function unknown]	96.85
KOG3493|consensus	73		96.85
cd01767	77	UBX UBX (ubiquitin regulatory X) domain. The UBX (	96.84
cd01770	79	p47_UBX p47-like ubiquitin domain. p47_UBX p47 is	96.76
PF11470	65	TUG-UBL1: GLUT4 regulating protein TUG; InterPro:	96.7
cd01772	79	SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-subst	96.58
PF10302	97	DUF2407: DUF2407 ubiquitin-like domain; InterPro:	96.49
KOG1639|consensus	297		96.4
cd01774	85	Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i	96.4
cd01771	80	Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac	95.98
cd01773	82	Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i	95.85
PF12382	137	Peptidase_A2E: Retrotransposon peptidase; InterPro	95.61
PF14453	57	ThiS-like: ThiS-like ubiquitin	95.5
COG4067	162	Uncharacterized protein conserved in archaea [Post	95.39
cd05470	109	pepsin_retropepsin_like Cellular and retroviral pe	95.22
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	95.15
PTZ00013	450	plasmepsin 4 (PM4); Provisional	95.13
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	94.91
PRK06437	67	hypothetical protein; Provisional	94.91
PTZ00147	453	plasmepsin-1; Provisional	94.86
KOG0013|consensus	231		94.72
PRK05863	65	sulfur carrier protein ThiS; Provisional	94.5
PRK06488	65	sulfur carrier protein ThiS; Validated	94.48
COG5227	103	SMT3 Ubiquitin-like protein (sentrin) [Posttransla	94.46
PRK08364	70	sulfur carrier protein ThiS; Provisional	93.74
PRK05659	66	sulfur carrier protein ThiS; Validated	93.54
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	93.49
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	93.46
cd05487	326	renin_like Renin stimulates production of angioten	93.4
PRK07696	67	sulfur carrier protein ThiS; Provisional	93.1
PRK08053	66	sulfur carrier protein ThiS; Provisional	92.55
PF15044	76	CLU_N: Mitochondrial function, CLU-N-term	92.54
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	92.53
cd05477	318	gastricsin Gastricsins, asparate proteases produce	92.3
cd05476	265	pepsin_A_like_plant Chroloplast Nucleoids DNA-bind	92.13
PRK07440	70	hypothetical protein; Provisional	92.04
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	92.02
cd05474	295	SAP_like SAPs, pepsin-like proteinases secreted fr	91.97
cd05477	318	gastricsin Gastricsins, asparate proteases produce	91.96
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	91.94
PRK06083	84	sulfur carrier protein ThiS; Provisional	91.65
PF09379	80	FERM_N: FERM N-terminal domain ; InterPro: IPR0189	91.29
PF05618	138	Zn_protease: Putative ATP-dependant zinc protease;	91.22
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	91.22
cd05486	316	Cathespin_E Cathepsin E, non-lysosomal aspartic pr	91.04
cd05478	317	pepsin_A Pepsin A, aspartic protease produced in g	91.01
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	90.99
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	90.97
cd05490	325	Cathepsin_D2 Cathepsin_D2, pepsin family of protei	90.86
PF14836	88	Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A	90.85
cd06098	317	phytepsin Phytepsin, a plant homolog of mammalian	90.82
PF00026	317	Asp: Eukaryotic aspartyl protease The Prosite entr	90.65
cd05485	329	Cathepsin_D_like Cathepsin_D_like, pepsin family o	90.31
PF10790	76	DUF2604: Protein of Unknown function (DUF2604); In	90.22
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	89.56
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	89.22
PTZ00165	482	aspartyl protease; Provisional	89.09
PRK06944	65	sulfur carrier protein ThiS; Provisional	89.01
cd01760	72	RBD Ubiquitin-like domain of RBD-like S/T kinases.	88.82
cd06097	278	Aspergillopepsin_like Aspergillopepsin_like, aspar	88.57
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	88.42
cd05488	320	Proteinase_A_fungi Fungal Proteinase A , aspartic	88.41
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	88.34
cd05473	364	beta_secretase_like Beta-secretase, aspartic-acid	88.31
cd05472	299	cnd41_like Chloroplast Nucleoids DNA-binding Prote	88.03
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	87.9
PF11069	98	DUF2870: Protein of unknown function (DUF2870); In	87.83
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	87.71
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	87.15
cd06406	80	PB1_P67 A PB1 domain is present in p67 proteins wh	87.02
cd05471	283	pepsin_like Pepsin-like aspartic proteases, biloba	86.14
TIGR02958	452	sec_mycoba_snm4 secretion protein snm4. Members of	85.81
KOG2086|consensus	380		85.41
PRK01777	95	hypothetical protein; Validated	85.01
cd06096	326	Plasmepsin_5 Plasmepsins are a class of aspartic p	84.99
smart00455	70	RBD Raf-like Ras-binding domain.	84.09
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	83.69
PF11620	88	GABP-alpha: GA-binding protein alpha chain; InterP	83.66
KOG4250|consensus	732		83.3
cd05471	283	pepsin_like Pepsin-like aspartic proteases, biloba	83.03
cd01768	87	RA RA (Ras-associating) ubiquitin domain. The RA (	81.54
cd05487	326	renin_like Renin stimulates production of angioten	81.03
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	81.02
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	80.64
PF03539	163	Spuma_A9PTase: Spumavirus aspartic protease (A9);	80.47
cd05475	273	nucellin_like Nucellins, plant aspartic proteases	80.17
PF14451	81	Ub-Mut7C: Mut7-C ubiquitin	80.1

>KOG0012|consensus

Probab=100.00  E-value=1.1e-61  Score=446.68  Aligned_cols=273  Identities=42%  Similarity=0.684  Sum_probs=245.3

Q ss_pred             CEEEEEcC--CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCC-cCCccccCCCCCCEEEEEEec---
Q psy8018           1 MKVTVTSL--DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDN-KKTLKDYNIQDGDLVLLKRVQ---   74 (280)
Q Consensus         1 M~ItV~~~--~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~-~~tL~~~gI~~gd~l~l~~~~---   74 (280)
                      |.+||.+.  ....++++|..+..+.+|+++++.++|++.+.-.|+||++++.++ +.+|.+||+++||++.+..+.   
T Consensus         1 M~~tvs~~l~~~~~~~i~v~~dg~L~nl~aL~~~d~g~~~~~~~li~n~~~l~s~~s~~l~Q~g~~~~dsl~lr~ks~d~   80 (380)
T KOG0012|consen    1 MSLTVSVALNFEKKFPIPVTTDGELNNLAALCWKDTGIVYDPSDLIYNPRPLVSNESQGLTQIGLKDGDSLALRCKSSDP   80 (380)
T ss_pred             CeEEEEEEecceeeeccccccccchhhHHHHHHHHhCcccchhhcccCCCccccchhhhhhhcccccceeEeccCCCCCC
Confidence            78888865  677889999999999999999999999999999999999999765 778999999999999997760   


Q ss_pred             ------------------cCCCC-----------------------------C---------------------------
Q psy8018          75 ------------------VARTS-----------------------------N---------------------------   80 (280)
Q Consensus        75 ------------------~p~~s-----------------------------~---------------------------   80 (280)
                                        .|+.+                             .                           
T Consensus        81 r~~v~~~~~~~~dFat~A~~~fs~q~a~~~~gaq~~rg~~~~di~~a~~~~ldsp~~~Rq~~la~pf~L~~~r~~lp~La  160 (380)
T KOG0012|consen   81 RPIVPIQVRLISDFATIAVPMFSSQRARQLQGAQRTRGRLQTDIPEASSLSLDSPATFRQALLAMPFFLHLDRAYLPPLA  160 (380)
T ss_pred             CccccccceehhcccccccccccchhccccccccccccccccccccccccCcCCHHHHHHHHhcCchhhhhchhhcCccc
Confidence                              00000                             0                           


Q ss_pred             ------ChhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhhHHHHHHHhHhhCCCcceeeeEEEEEE
Q psy8018          81 ------PSDDFARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIKKSNIQANMEAAMEYNPETFGSVIMLYINC  154 (280)
Q Consensus        81 ------~~~~f~~~~~~~~~~~~~~~~~~~~~~~~dp~~~e~q~~i~e~i~q~~i~~~~~~a~e~~Pe~~~~~~~l~i~~  154 (280)
                            +.++|.+.+++.+..+..++..+++++++||||+|+|++|+|.|+|++|+|||.+|+||+||.|+.|+|+||+|
T Consensus       161 ~~l~~g~~~k~~~~~~~~q~d~~rr~~~~~rl~eanPfd~E~q~rIee~irq~~i~eq~~~ai~~~pe~f~~v~ML~iN~  240 (380)
T KOG0012|consen  161 ALLVLGDLEKFDRTLKEMQKDYQRRSVHQRRLLEANPFDLEAQRRIEEKIRQNAIDEQMSHAIEYHPEDFTQVTMLYINC  240 (380)
T ss_pred             hhhcccchhhhhhhhhhhccccchhhhhhHHHHhcCCcchhhhhhhhHHHHHHHHHHHHHHhhhcCccccccceEEEEEE
Confidence                  34555555555555556566778899999999999999999999999999999999999999999999999999


Q ss_pred             EEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEecCCCccc
Q psy8018         155 RVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDM  234 (280)
Q Consensus       155 ~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~~~~~d~  234 (280)
                      +|||+|||||||||||.|+||.+||+||||.+++|+||.|++.|||+.++.|+||.++++||+.+++|+|.|++..++|+
T Consensus       241 ~ing~~VKAfVDsGaq~timS~~Caer~gL~rlid~r~~g~a~gvg~~ki~g~Ih~~~lki~~~~l~c~ftV~d~~~~d~  320 (380)
T KOG0012|consen  241 EINGVPVKAFVDSGAQTTIMSAACAERCGLNRLIDKRFQGEARGVGTEKILGRIHQAQLKIEDLYLPCSFTVLDRRDMDL  320 (380)
T ss_pred             EECCEEEEEEEcccchhhhhhHHHHHHhChHHHhhhhhhccccCCCcccccceeEEEEEEeccEeeccceEEecCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhhcceEEEEecccEEEeeeeecCCCccceeeccc
Q psy8018         235 LLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLD  274 (280)
Q Consensus       235 ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~  274 (280)
                      +||+|+||+|+|+||+++|+|+|+.+.- ++||-+.-+++
T Consensus       321 llGLd~Lrr~~ccIdL~~~~L~ig~~~t-eiPfl~~~~lp  359 (380)
T KOG0012|consen  321 LLGLDMLRRHQCCIDLKTNVLRIGNTET-EIPFLPSNELP  359 (380)
T ss_pred             hhhHHHHHhccceeecccCeEEecCCCc-cccccccccCC
Confidence            9999999999999999999999999866 78887665543

>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=100.00  E-value=3e-44  Score=292.19  Aligned_cols=124  Identities=62%  Similarity=1.028  Sum_probs=87.2

Q ss_pred             hhhHHHHHHHhHhhCCCcceeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEE
Q psy8018         126 KSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRII  205 (280)
Q Consensus       126 q~~i~~~~~~a~e~~Pe~~~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~  205 (280)
                      |+||+|||++|+|++||.|++++|+||+|+|||++++||||||||+|+||.+||+||||++++|+|+.|++.|+|+++++
T Consensus         1 q~~i~~~~~~a~e~~PE~f~~v~mLyI~~~ing~~vkA~VDtGAQ~tims~~~a~r~gL~~lid~r~~g~a~GvG~~~i~   80 (124)
T PF09668_consen    1 QENIDENLENAMEHSPESFGQVSMLYINCKINGVPVKAFVDTGAQSTIMSKSCAERCGLMRLIDKRFAGVAKGVGTQKIL   80 (124)
T ss_dssp             -------------------------EEEEEETTEEEEEEEETT-SS-EEEHHHHHHTTGGGGEEGGG-EE-------EEE
T ss_pred             ChhHHHHHHHHHHhCcHhhcCcceEEEEEEECCEEEEEEEeCCCCccccCHHHHHHcCChhhccccccccccCCCcCcee
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEEEECCeEEEeEEEEecCCCcccccchhhhhcceEEEE
Q psy8018         206 GRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIA  249 (280)
Q Consensus       206 g~i~~~~i~IG~~~~~~~~~Vl~~~~~d~ILG~D~L~~~~~~ID  249 (280)
                      |++|.++++||+.++||+|.|+++.+.|+|||+|||++|+|+||
T Consensus        81 G~Ih~~~l~ig~~~~~~s~~Vle~~~~d~llGld~L~~~~c~ID  124 (124)
T PF09668_consen   81 GRIHSVQLKIGGLFFPCSFTVLEDQDVDLLLGLDMLKRHKCCID  124 (124)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEETTSSSSEEEEHHHHHHTT-EEE
T ss_pred             EEEEEEEEEECCEEEEEEEEEeCCCCcceeeeHHHHHHhCcccC
Confidence            99999999999999999999999999999999999999999998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.

>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein

Probab=100.00  E-value=1.6e-36  Score=235.01  Aligned_cols=101  Identities=25%  Similarity=0.467  Sum_probs=96.8

Q ss_pred             EEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCcccccc-ceeeeeecCce-eeEEeEEEEEEEEECCeEEEeEEEEecC
Q psy8018         152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDT-RWAGIAKGVGV-QRIIGRIHMVQIAIENDFLTTSFSVLED  229 (280)
Q Consensus       152 i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~-r~~g~a~gvG~-~~~~g~i~~~~i~IG~~~~~~~~~Vl~~  229 (280)
                      |+|++||+|++||||||||+|+||++||+||||+++++. |+.|+|.|||+ .+++||+|.++++||+.++||+|+|+++
T Consensus         1 vnCk~nG~~vkAfVDsGaQ~timS~~caercgL~r~v~~~r~~g~A~gvgt~~kiiGrih~~~ikig~~~~~CSftVld~   80 (103)
T cd05480           1 VSCQCAGKELRALVDTGCQYNLISAACLDRLGLKERVLKAKAEEEAPSLPTSVKVIGQIERLVLQLGQLTVECSAQVVDD   80 (103)
T ss_pred             CceeECCEEEEEEEecCCchhhcCHHHHHHcChHhhhhhccccccccCCCcceeEeeEEEEEEEEeCCEEeeEEEEEEcC
Confidence            589999999999999999999999999999999988776 88899999998 6999999999999999999999999999


Q ss_pred             CCcccccchhhhhcceEEEEecc
Q psy8018         230 QPMDMLLGLDMLKRHQVQIAIEN  252 (280)
Q Consensus       230 ~~~d~ILG~D~L~~~~~~ID~~~  252 (280)
                      .++|++||+|+|++|+|+||+++
T Consensus        81 ~~~d~llGLdmLkrhqc~IdL~k  103 (103)
T cd05480          81 NEKNFSLGLQTLKSLKCVINLEK  103 (103)
T ss_pred             CCcceEeeHHHHhhcceeeeccC
Confidence            99999999999999999999975

Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein

Probab=99.97  E-value=7.3e-31  Score=214.22  Aligned_cols=124  Identities=60%  Similarity=0.968  Sum_probs=116.6

Q ss_pred             HHhHhhCCCcceeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEE
Q psy8018         134 EAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       134 ~~a~e~~Pe~~~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ++|+|++||.|..++++|++++|||++++|||||||++|+||+++|+|+||+...+.++.+.+.|+|+....|+++.+++
T Consensus         1 ~~~~~~~~~~~~~~~~~~v~~~Ing~~~~~LvDTGAs~s~Is~~~a~~lgl~~~~~~~~~~~~~g~g~~~~~g~~~~~~l   80 (124)
T cd05479           1 QNAMEHHPESFGKVPMLYINVEINGVPVKAFVDSGAQMTIMSKACAEKCGLMRLIDKRFQGIAKGVGTQKILGRIHLAQV   80 (124)
T ss_pred             CchhhcCcchhceeeEEEEEEEECCEEEEEEEeCCCceEEeCHHHHHHcCCccccCcceEEEEecCCCcEEEeEEEEEEE
Confidence            35799999999999999999999999999999999999999999999999987666677777889888888999999999


Q ss_pred             EECCeEEEeEEEEecCCCcccccchhhhhcceEEEEecccEEEe
Q psy8018         214 AIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTT  257 (280)
Q Consensus       214 ~IG~~~~~~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i  257 (280)
                      +||++.++++|.|++..++|+|||||||++++++|||++++|+|
T Consensus        81 ~i~~~~~~~~~~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~  124 (124)
T cd05479          81 KIGNLFLPCSFTVLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI  124 (124)
T ss_pred             EECCEEeeeEEEEECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence            99999999999999988999999999999999999999999985

The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.

>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses)

Probab=99.84  E-value=3e-20  Score=153.99  Aligned_cols=112  Identities=21%  Similarity=0.270  Sum_probs=95.1

Q ss_pred             eEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccc-cccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEE
Q psy8018         148 IMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRL-IDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSV  226 (280)
Q Consensus       148 ~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~-~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~V  226 (280)
                      .-+...+.|+++++.+||||||++||||.++|.+++|+.. ....+ -+..+.|.....+.++.+++.+++..+..+|.|
T Consensus        20 ~vi~g~~~I~~~~~~vLiDSGAThsFIs~~~a~~~~l~~~~l~~~~-~V~~~g~~~~~~~~~~~~~~~i~g~~~~~dl~v   98 (135)
T PF08284_consen   20 DVITGTFLINSIPASVLIDSGATHSFISSSFAKKLGLPLEPLPRPI-VVSAPGGSINCEGVCPDVPLSIQGHEFVVDLLV   98 (135)
T ss_pred             CeEEEEEEeccEEEEEEEecCCCcEEccHHHHHhcCCEEEEccCee-EEecccccccccceeeeEEEEECCeEEEeeeEE
Confidence            4456789999999999999999999999999999999765 33322 222222345567888889999999999999999


Q ss_pred             ecCCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         227 LEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       227 l~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      ++..++|+|||||||++|++.|||.+++++|..+
T Consensus        99 l~l~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p  132 (135)
T PF08284_consen   99 LDLGGYDVILGMDWLKKHNPVIDWATKTVTFNSP  132 (135)
T ss_pred             ecccceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence            9988999999999999999999999999999765

These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.

>cd01807 GDX_N ubiquitin-like domain of GDX

Probab=99.81  E-value=1.5e-19  Score=134.47  Aligned_cols=72  Identities=28%  Similarity=0.359  Sum_probs=70.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|++++|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.+
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~L~d~-~~L~~~~i~~~~~l~l~~~   72 (74)
T cd01807           1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKALADD-KRLSDYSIGPNAKLNLVVR   72 (74)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC-CCHHHCCCCCCCEEEEEEc
Confidence            89999999999999999999999999999999999999999999999999986 9999999999999999985

GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.

>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF

Probab=99.78  E-value=7.9e-19  Score=132.35  Aligned_cols=75  Identities=21%  Similarity=0.284  Sum_probs=70.3

Q ss_pred             CEEEEEcCCCcE-EEEE-eCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccC
Q psy8018           1 MKVTVTSLDNEC-FLLD-VSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA   76 (280)
Q Consensus         1 M~ItV~~~~g~~-~~le-V~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p   76 (280)
                      |+|+|++.+|+. ++++ ++++.||++||++|++.+|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.++-|
T Consensus         1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~L~D~-~tL~~y~i~~~~~i~l~~~~~~   77 (78)
T cd01797           1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQMEDG-HTLFDYNVGLNDIIQLLVRQDP   77 (78)
T ss_pred             CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEECCCC-CCHHHcCCCCCCEEEEEEecCC
Confidence            999999999997 7895 8999999999999999999999999999999999986 8999999999999999987544

NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.

>cd01793 Fubi Fubi ubiquitin-like protein

Probab=99.78  E-value=1.4e-18  Score=129.37  Aligned_cols=70  Identities=19%  Similarity=0.254  Sum_probs=66.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+||+.  ++++++|+|++||++||++|++++|+|+++|+|+|+|++|.|+ +||++|||+++++|+++.+
T Consensus         1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~L~D~-~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01793           1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVPLEDD-ATLGQCGVEELCTLEVAGR   70 (74)
T ss_pred             CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeECCCC-CCHHHcCCCCCCEEEEEEe
Confidence            89999983  7899999999999999999999999999999999999999986 9999999999999999985

Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.

>PTZ00044 ubiquitin; Provisional

Probab=99.76  E-value=4.1e-18  Score=126.95  Aligned_cols=72  Identities=18%  Similarity=0.373  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|++++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ .+|++|||++|++|++..+
T Consensus         1 m~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~l~~~~i~~~~~i~l~~~   72 (76)
T PTZ00044          1 MQILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQMSDD-LKLSDYKVVPGSTIHMVLQ   72 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEEccCC-CcHHHcCCCCCCEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999875 8999999999999999986

>cd01791 Ubl5 UBL5 ubiquitin-like modifier

Probab=99.75  E-value=4.4e-18  Score=126.75  Aligned_cols=70  Identities=20%  Similarity=0.269  Sum_probs=67.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |+|+|++..|+.+.++|+|+.||++||++|++..|+|+++|+|+|.|++|.|+ +||++|||++|++|||-
T Consensus         2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~L~D~-~tL~~ygi~~~stv~l~   71 (73)
T cd01791           2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDH-ISLGDYEIHDGMNLELY   71 (73)
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcCCCCC-CCHHHcCCCCCCEEEEE
Confidence            78999999999999999999999999999999999999999999999999986 89999999999999985

UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.

>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family

Probab=99.75  E-value=2.5e-17  Score=134.00  Aligned_cols=108  Identities=20%  Similarity=0.231  Sum_probs=84.8

Q ss_pred             eeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-eE
Q psy8018         145 GSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-TS  223 (280)
Q Consensus       145 ~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-~~  223 (280)
                      .+..+++++++|||+++.|+|||||++|++|+++|+++|+..... .+.....+.++.....++....+++|+..+. ++
T Consensus         7 ~~~g~~~v~~~InG~~~~flVDTGAs~t~is~~~A~~Lgl~~~~~-~~~~~~~ta~G~~~~~~~~l~~l~iG~~~~~nv~   85 (121)
T TIGR02281         7 DGDGHFYATGRVNGRNVRFLVDTGATSVALNEEDAQRLGLDLNRL-GYTVTVSTANGQIKAARVTLDRVAIGGIVVNDVD   85 (121)
T ss_pred             cCCCeEEEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCCCcccC-CceEEEEeCCCcEEEEEEEeCEEEECCEEEeCcE
Confidence            355789999999999999999999999999999999999975321 1122334444444466677779999998776 88


Q ss_pred             EEEecCC-Ccccccchhhhhcce-EEEEeccc
Q psy8018         224 FSVLEDQ-PMDMLLGLDMLKRHQ-VQIAIEND  253 (280)
Q Consensus       224 ~~Vl~~~-~~d~ILG~D~L~~~~-~~ID~~~~  253 (280)
                      +.|++.. ..++|||||||++++ +.||-.+-
T Consensus        86 ~~v~~~~~~~~~LLGm~fL~~~~~~~~~~~~l  117 (121)
T TIGR02281        86 AMVAEGGALSESLLGMSFLNRLSRFTVRGGKL  117 (121)
T ss_pred             EEEeCCCcCCceEcCHHHHhccccEEEECCEE
Confidence            9999865 357999999999996 87776443

This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).

>cd01805 RAD23_N Ubiquitin-like domain of RAD23

Probab=99.74  E-value=9.5e-18  Score=125.15  Aligned_cols=72  Identities=26%  Similarity=0.491  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCC--CCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGI--SAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gi--p~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||+.|++.+|+  |+++|+|+|+|++|.|+ .+|++|||++|++|+++.+
T Consensus         1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~L~d~-~~L~~~~i~~~~~i~~~~~   74 (77)
T cd01805           1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKILKDD-TTLEEYKIDEKDFVVVMVS   74 (77)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEEccCC-CCHHHcCCCCCCEEEEEEe
Confidence            999999999999999999999999999999999999  99999999999999876 8999999999999999876

RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).

>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain

Probab=99.74  E-value=4.9e-18  Score=125.65  Aligned_cols=69  Identities=51%  Similarity=0.837  Sum_probs=65.7

Q ss_pred             EEEEcC-CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           3 VTVTSL-DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         3 ItV~~~-~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |||++. +|++++++|++++||++||++|++++|+|+++|+|+|+|++|.|++.+|++|||++|++|+|.
T Consensus         1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~   70 (71)
T cd01796           1 ITVYTARSETTFSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR   70 (71)
T ss_pred             CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence            689998 999999999999999999999999999999999999999999887679999999999999985

DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.

>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2

Probab=99.74  E-value=8.4e-18  Score=125.13  Aligned_cols=70  Identities=16%  Similarity=0.312  Sum_probs=67.7

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|++++|++++++|++++||++||++|++..|+|+++|+|+|+|++|.|+ +||++|||++|++|+|..+
T Consensus         1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~L~D~-~tL~~~~i~~~~tl~l~~~   70 (74)
T cd01810           1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRPMEDE-HPLGEYGLKPGCTVFMNLR   70 (74)
T ss_pred             CEEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEECCCC-CCHHHcCCCCCCEEEEEEE
Confidence            689999999999999999999999999999999999999999999999987 9999999999999999885

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01806 Nedd8 Nebb8-like ubiquitin protein

Probab=99.73  E-value=2e-17  Score=122.62  Aligned_cols=72  Identities=25%  Similarity=0.432  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.+.++|+++.||++||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|++..+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~L~d~-~tl~~~~i~~g~~i~l~~~   72 (76)
T cd01806           1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDD-KTAADYKLEGGSVLHLVLA   72 (76)
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeEccCC-CCHHHcCCCCCCEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999876 8999999999999999986

Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.

>cd01802 AN1_N ubiquitin-like domain of AN1

Probab=99.73  E-value=1.1e-17  Score=132.47  Aligned_cols=72  Identities=28%  Similarity=0.363  Sum_probs=69.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|++..|+|+++|+|+|+|++|.|+ .+|++|||++|++|+|+.+
T Consensus        28 M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~L~D~-~tL~dy~I~~~stL~l~~~   99 (103)
T cd01802          28 MELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNMELEDE-YCLNDYNISEGCTLKLVLA   99 (103)
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            89999999999999999999999999999999999999999999999999986 8999999999999999885

AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.

>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein

Probab=99.73  E-value=1e-17  Score=123.27  Aligned_cols=70  Identities=17%  Similarity=0.395  Sum_probs=67.1

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|++.+|+.++++|++++||++||++|++++|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.|
T Consensus         1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~L~d~-~~l~~~~i~~~stl~l~~~   70 (70)
T cd01798           1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKELRNT-TTIQECDLGQQSILHAVRR   70 (70)
T ss_pred             CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEeC
Confidence            689999999999999999999999999999999999999999999999876 9999999999999999864

parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.

>cd01803 Ubiquitin Ubiquitin

Probab=99.72  E-value=3e-17  Score=121.72  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=69.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.+.++|++++||++||++|+..+|+|++.|+|+|+|+.|.|+ +||++||+++|++|++..+
T Consensus         1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~i~l~~~   72 (76)
T cd01803           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   72 (76)
T ss_pred             CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEECCCC-CcHHHcCCCCCCEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999976 8999999999999999986

Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)

>cd01804 midnolin_N Ubiquitin-like domain of midnolin

Probab=99.72  E-value=2.9e-17  Score=123.68  Aligned_cols=71  Identities=21%  Similarity=0.302  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|+++.||++||+.|+++.|+|+++|+|+|+|++|.|+  +|++|||++|++|+|+..
T Consensus         2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~L~d~--~L~~~gi~~~~~i~l~~~   72 (78)
T cd01804           2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETRLSSG--KLQDLGLGDGSKLTLVPT   72 (78)
T ss_pred             eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcCCCCC--cHHHcCCCCCCEEEEEee
Confidence            89999999999999999999999999999999999999999999999999874  899999999999999885

midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.

>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein

Probab=99.71  E-value=4.4e-17  Score=119.58  Aligned_cols=72  Identities=24%  Similarity=0.505  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++++++.||.+||+.|+..+|+|++.|+|+|+|+.|.|+ ++|++||+++|++|+|..+
T Consensus         1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~L~d~-~~L~~~~i~~~~~l~l~~~   72 (72)
T cd01809           1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRVLKDD-ETLSEYKVEDGHTIHLVKR   72 (72)
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEECCCc-CcHHHCCCCCCCEEEEEeC
Confidence            89999999999999999999999999999999999999999999999999986 8999999999999999763

Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.

>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2

Probab=99.71  E-value=3.5e-17  Score=123.70  Aligned_cols=75  Identities=19%  Similarity=0.252  Sum_probs=70.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEE--EECCeeeCCCcCCccccCCCCCCEEEEEEeccC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAI--EFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA   76 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~L--i~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p   76 (280)
                      |+|+|++.+|+.++++|+++.||.+||+.|+..+|+|+++|+|  +|+|++|.|+ +||++|||++|++|+|+.++.|
T Consensus         3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~L~D~-~tL~~~gi~~gs~l~l~~~~~~   79 (80)
T cd01792           3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREVLQDG-VPLVSQGLGPGSTVLLVVQNCS   79 (80)
T ss_pred             eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCCCCCC-CCHHHcCCCCCCEEEEEEEccC
Confidence            7899999999999999999999999999999999999999999  8999999986 8999999999999999987544

ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.

>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein

Probab=99.70  E-value=4.9e-17  Score=120.12  Aligned_cols=68  Identities=21%  Similarity=0.193  Sum_probs=65.0

Q ss_pred             EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      .|+.++|+.++++|+|++||.+||++|++..|+|+++|+|+|+|++|.|+ .+|++|||++|++|+|..
T Consensus         2 ~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~L~D~-~~l~~~~i~~~~tv~~~~   69 (70)
T cd01794           2 KVRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKLLTDK-TRLQETKIQKDYVVQVIV   69 (70)
T ss_pred             eEEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCC-CCHHHcCCCCCCEEEEEe
Confidence            57889999999999999999999999999999999999999999999986 899999999999999975

DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.

>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2

Probab=99.68  E-value=1.7e-16  Score=117.06  Aligned_cols=71  Identities=28%  Similarity=0.404  Sum_probs=66.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|. .+++|+++.||.+||+.|++.+|+|+++|+|+|+|++|.|+ +||++|||++|++|+++.+
T Consensus         1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~L~d~-~tL~~~~i~~~stl~l~~~   71 (71)
T cd01808           1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKILKDT-DTLTQHNIKDGLTVHLVIK   71 (71)
T ss_pred             CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeEcCCC-CcHHHcCCCCCCEEEEEEC
Confidence            68999999997 58999999999999999999999999999999999999986 8999999999999999763

hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.

>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases

Probab=99.67  E-value=8.3e-16  Score=118.40  Aligned_cols=88  Identities=23%  Similarity=0.317  Sum_probs=74.4

Q ss_pred             EEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCc--eeeEEeEEEEEEEEECCeEEEeEEEEec
Q psy8018         151 YINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVG--VQRIIGRIHMVQIAIENDFLTTSFSVLE  228 (280)
Q Consensus       151 ~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG--~~~~~g~i~~~~i~IG~~~~~~~~~Vl~  228 (280)
                      |+.+.|||++++++|||||++|+||.+.+.++|++...+...  ...+.+  ..+..|.+ .+.+++|+..+..+|.|++
T Consensus         2 ~~~~~Ing~~i~~lvDTGA~~svis~~~~~~lg~~~~~~~~~--~v~~a~G~~~~~~G~~-~~~v~~~~~~~~~~~~v~~   78 (91)
T cd05484           2 TVTLLVNGKPLKFQLDTGSAITVISEKTWRKLGSPPLKPTKK--RLRTATGTKLSVLGQI-LVTVKYGGKTKVLTLYVVK   78 (91)
T ss_pred             EEEEEECCEEEEEEEcCCcceEEeCHHHHHHhCCCccccccE--EEEecCCCEeeEeEEE-EEEEEECCEEEEEEEEEEE
Confidence            789999999999999999999999999999999986433322  223333  46778888 6799999999999999999


Q ss_pred             CCCcccccchhhhh
Q psy8018         229 DQPMDMLLGLDMLK  242 (280)
Q Consensus       229 ~~~~d~ILG~D~L~  242 (280)
                      .. .+.|||+|||.
T Consensus        79 ~~-~~~lLG~~wl~   91 (91)
T cd05484          79 NE-GLNLLGRDWLD   91 (91)
T ss_pred             CC-CCCccChhhcC
Confidence            76 99999999984

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif

>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade

Probab=99.67  E-value=3e-16  Score=114.54  Aligned_cols=67  Identities=30%  Similarity=0.504  Sum_probs=63.6

Q ss_pred             EcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           6 TSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         6 ~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+++|+.++++|+++.||.+||++|++++|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|..+
T Consensus         1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~-~tL~~~~i~~~~~I~l~~k   67 (69)
T PF00240_consen    1 KTLSGKTFTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDD-KTLSDYGIKDGSTIHLVIK   67 (69)
T ss_dssp             EETTSEEEEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTT-SBTGGGTTSTTEEEEEEES
T ss_pred             CCCCCcEEEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCc-CcHHHcCCCCCCEEEEEEe
Confidence            578999999999999999999999999999999999999999999765 9999999999999999875

There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....

>cd01812 BAG1_N Ubiquitin-like domain of BAG1

Probab=99.64  E-value=7.4e-16  Score=112.96  Aligned_cols=70  Identities=23%  Similarity=0.369  Sum_probs=66.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|+.. |+.++++|+++.||++||++|+..+|+|++.|+|+|+|+.|.|+ ++|++|||++|++|+++.
T Consensus         1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~l~d~-~~L~~~~i~~g~~l~v~~   70 (71)
T cd01812           1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKERDDA-ETLDMSGVKDGSKVMLLE   70 (71)
T ss_pred             CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcccCcc-CcHHHcCCCCCCEEEEec
Confidence            68999996 99999999999999999999999999999999999999999875 899999999999999863

BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).

>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein

Probab=99.64  E-value=5.9e-16  Score=116.73  Aligned_cols=71  Identities=14%  Similarity=0.134  Sum_probs=63.0

Q ss_pred             CEEEEEcCCCcE--EEEEeCCCccHHHHHHHHHHHhC--CCCcceEEEECCeeeCCCcCCccccC--CCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNEC--FLLDVSEDLELENFKAFCEVQSG--ISAQEIAIEFQGNALVDNKKTLKDYN--IQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~--~~leV~~~~tV~~LK~~Ie~e~g--ip~~~Q~Li~~Gk~L~d~~~tL~~~g--I~~gd~l~l~~   72 (280)
                      +.|+||+++|+.  +++++++++||.+||++|+...+  .|+++|+|||+||+|+|+ .||++|+  +++|.+|||+-
T Consensus         2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKiLkD~-~tL~~~~~~~~~~~tiHLV~   78 (79)
T cd01790           2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKLLPDH-LKLRDVLRKQDEYHMVHLVC   78 (79)
T ss_pred             eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCeeccch-hhHHHHhhcccCCceEEEEe
Confidence            578999999999  55566899999999999999874  558999999999999976 9999997  99999999974

Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.

>PF13650 Asp_protease_2: Aspartyl protease

Probab=99.62  E-value=4.8e-15  Score=112.01  Aligned_cols=88  Identities=27%  Similarity=0.450  Sum_probs=70.9

Q ss_pred             EEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEE-EeEEEEec-C
Q psy8018         152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFL-TTSFSVLE-D  229 (280)
Q Consensus       152 i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~-~~~~~Vl~-~  229 (280)
                      |+++|||++++|++||||+.|+|++++|+++|+...... ......|.++...........+++|+..+ .+.+.|++ .
T Consensus         1 V~v~vng~~~~~liDTGa~~~~i~~~~~~~l~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~i~ig~~~~~~~~~~v~~~~   79 (90)
T PF13650_consen    1 VPVKVNGKPVRFLIDTGASISVISRSLAKKLGLKPRPKS-VPISVSGAGGSVTVYRGRVDSITIGGITLKNVPFLVVDLG   79 (90)
T ss_pred             CEEEECCEEEEEEEcCCCCcEEECHHHHHHcCCCCcCCc-eeEEEEeCCCCEEEEEEEEEEEEECCEEEEeEEEEEECCC
Confidence            689999999999999999999999999999999755321 12234566655555555666999999876 68899998 6


Q ss_pred             CCcccccchhh
Q psy8018         230 QPMDMLLGLDM  240 (280)
Q Consensus       230 ~~~d~ILG~D~  240 (280)
                      ...|+|||+||
T Consensus        80 ~~~~~iLG~df   90 (90)
T PF13650_consen   80 DPIDGILGMDF   90 (90)
T ss_pred             CCCEEEeCCcC
Confidence            78999999998

>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120

Probab=99.62  E-value=1.7e-15  Score=113.38  Aligned_cols=65  Identities=17%  Similarity=0.345  Sum_probs=62.4

Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           8 LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         8 ~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      ++|++++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         5 l~g~~~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~~~i~~g~~l~v~~~   69 (76)
T cd01800           5 LNGQMLNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIFIKDS-NSLAYYNLANGTIIHLQLK   69 (76)
T ss_pred             cCCeEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEEcCCC-CcHHHcCCCCCCEEEEEEe
Confidence            5799999999999999999999999999999999999999999986 8999999999999999986

SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.

>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family

Probab=99.61  E-value=6e-15  Score=112.63  Aligned_cols=92  Identities=25%  Similarity=0.414  Sum_probs=72.9

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-eEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-TSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-~~~~Vl  227 (280)
                      +++++++|||++++|+|||||+.|+|+.++|+++++.......  ....++++...........+++|+..+. +.+.|+
T Consensus         2 ~~~v~v~i~~~~~~~llDTGa~~s~i~~~~~~~l~~~~~~~~~--~~~~~~~G~~~~~~~~~~~i~ig~~~~~~~~~~v~   79 (96)
T cd05483           2 HFVVPVTINGQPVRFLLDTGASTTVISEELAERLGLPLTLGGK--VTVQTANGRVRAARVRLDSLQIGGITLRNVPAVVL   79 (96)
T ss_pred             cEEEEEEECCEEEEEEEECCCCcEEcCHHHHHHcCCCccCCCc--EEEEecCCCccceEEEcceEEECCcEEeccEEEEe
Confidence            6899999999999999999999999999999999973221111  2334555554555555669999998665 789999


Q ss_pred             cCCC--cccccchhhhh
Q psy8018         228 EDQP--MDMLLGLDMLK  242 (280)
Q Consensus       228 ~~~~--~d~ILG~D~L~  242 (280)
                      +...  .|+|||+|||+
T Consensus        80 d~~~~~~~gIlG~d~l~   96 (96)
T cd05483          80 PGDALGVDGLLGMDFLR   96 (96)
T ss_pred             CCcccCCceEeChHHhC
Confidence            8766  99999999995

This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd01813 UBP_N UBP ubiquitin processing protease

Probab=99.60  E-value=3.1e-15  Score=111.61  Aligned_cols=70  Identities=10%  Similarity=0.208  Sum_probs=65.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE---CCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF---QGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~---~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |.|+|+- +|+.|+++|+++.||++||+.|++.+|+|+++|+|+|   .|+.|.|+ .+|++|||++|+.|+|+.
T Consensus         1 ~~i~vk~-~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~l~D~-~~L~~~~i~~g~~i~lmG   73 (74)
T cd01813           1 VPVIVKW-GGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKPAEDD-VKISALKLKPNTKIMMMG   73 (74)
T ss_pred             CEEEEEE-CCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCcCCCC-cCHHHcCCCCCCEEEEEe
Confidence            5788887 7889999999999999999999999999999999997   99999876 899999999999999874

The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.

>KOG0005|consensus

Probab=99.57  E-value=2.5e-15  Score=105.72  Aligned_cols=70  Identities=26%  Similarity=0.431  Sum_probs=67.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |.|.|++++|+.+.++++|++.|+.+|+.++++.||||.+|||+|.||++.|| +|-++|++.-|++||++
T Consensus         1 m~iKvktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkqm~DD-~tA~~Y~~~~GSVlHlv   70 (70)
T KOG0005|consen    1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQMNDD-KTAAHYNLLGGSVLHLV   70 (70)
T ss_pred             CeeeEeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccccccc-ccHHHhhhccceeEeeC
Confidence            88999999999999999999999999999999999999999999999999987 89999999999999974

>TIGR00601 rad23 UV excision repair protein Rad23

Probab=99.56  E-value=9.3e-15  Score=139.62  Aligned_cols=72  Identities=25%  Similarity=0.492  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhC---CCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG---ISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~g---ip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+||||+++|++++|+|++++||.+||++|+.+.|   +|+++|+|+|+||+|.|+ +||++|||++|++|+++.+
T Consensus         1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~GkiL~Dd-~tL~dy~I~e~~~Ivvmv~   75 (378)
T TIGR00601         1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKILSDD-KTVREYKIKEKDFVVVMVS   75 (378)
T ss_pred             CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEECCCC-CcHHHcCCCCCCEEEEEec
Confidence            99999999999999999999999999999999998   999999999999999986 8999999999999998876

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.56  E-value=2.7e-14  Score=111.21  Aligned_cols=95  Identities=29%  Similarity=0.510  Sum_probs=77.1

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceee-EEeEEEEEEEEECCeEEEeEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQR-IIGRIHMVQIAIENDFLTTSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~-~~g~i~~~~i~IG~~~~~~~~~Vl  227 (280)
                      ..++.++|||++++|+|||||..|+|+.+.+...+...    .......|+|+.. ..|.. .+.+++++..+...|.|+
T Consensus         5 rp~i~v~i~g~~i~~LlDTGA~vsiI~~~~~~~~~~~~----~~~~~v~~~~g~~~~~~~~-~~~v~~~~~~~~~~~~v~   79 (100)
T PF00077_consen    5 RPYITVKINGKKIKALLDTGADVSIISEKDWKKLGPPP----KTSITVRGAGGSSSILGST-TVEVKIGGKEFNHTFLVV   79 (100)
T ss_dssp             SSEEEEEETTEEEEEEEETTBSSEEESSGGSSSTSSEE----EEEEEEEETTEEEEEEEEE-EEEEEETTEEEEEEEEES
T ss_pred             CceEEEeECCEEEEEEEecCCCcceecccccccccccc----cCCceeccCCCcceeeeEE-EEEEEEECccceEEEEec
Confidence            34699999999999999999999999999887776541    1122456777654 34444 569999999999999999


Q ss_pred             cCCCcccccchhhhhcceEEEE
Q psy8018         228 EDQPMDMLLGLDMLKRHQVQIA  249 (280)
Q Consensus       228 ~~~~~d~ILG~D~L~~~~~~ID  249 (280)
                      ++.++| |||.|||+++++.|+
T Consensus        80 ~~~~~~-ILG~D~L~~~~~~i~  100 (100)
T PF00077_consen   80 PDLPMN-ILGRDFLKKLNAVIN  100 (100)
T ss_dssp             STCSSE-EEEHHHHTTTTCEEE
T ss_pred             CCCCCC-EeChhHHHHcCCEEC
Confidence            987888 999999999999885

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....

>smart00213 UBQ Ubiquitin homologues

Probab=99.56  E-value=1.1e-14  Score=103.67  Aligned_cols=64  Identities=33%  Similarity=0.556  Sum_probs=61.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGD   66 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd   66 (280)
                      |+|+|++.+ ..+.++|+++.||++||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|+
T Consensus         1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~L~d~-~tL~~~~i~~~~   64 (64)
T smart00213        1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKVLEDD-RTLADYNIQDGS   64 (64)
T ss_pred             CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEECCCC-CCHHHcCCcCCC
Confidence            899999988 7899999999999999999999999999999999999999986 899999999986

Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression

>KOG0003|consensus

Probab=99.54  E-value=6.5e-16  Score=120.88  Aligned_cols=72  Identities=31%  Similarity=0.442  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |++++++..|++.+++|+|+.||.++|++|....|||+++|+|+|+|++|+|. .||++|||+.-|||++..+
T Consensus         1 ~~~~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~-~Tla~Y~i~~~~Tl~~~~r   72 (128)
T KOG0003|consen    1 MQIFVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLADYNIQKESTLHLVLR   72 (128)
T ss_pred             CcEEEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccC-CcccccCccchhhhhhhHH
Confidence            78999999999999999999999999999999999999999999999999985 9999999999999999875

>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1

Probab=99.54  E-value=1.6e-14  Score=108.18  Aligned_cols=68  Identities=22%  Similarity=0.294  Sum_probs=61.1

Q ss_pred             EEEE--cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCC-CCCEEEEE
Q psy8018           3 VTVT--SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQ-DGDLVLLK   71 (280)
Q Consensus         3 ItV~--~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~-~gd~l~l~   71 (280)
                      +.|.  ...|.+++++|+|++||++||++|+..+|||+++|+| |+|+.|.++++||++||++ +||+++|-
T Consensus         3 ~~~~~~~~~~~t~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~   73 (75)
T cd01799           3 VSVEDAQSHTVTIWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLY   73 (75)
T ss_pred             EEEeccccCCCeEEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEE
Confidence            4454  4568899999999999999999999999999999999 9999997666899999999 88999985

HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.

>cd01763 Sumo Small ubiquitin-related modifier (SUMO)

Probab=99.51  E-value=1.1e-13  Score=106.31  Aligned_cols=73  Identities=21%  Similarity=0.361  Sum_probs=69.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|+|++.+|+...+.|.++++++.||+.+++..|+|+++|+|+|+|+.|.++ .|+++||+++||+|++..++
T Consensus        12 i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~L~~~-~T~~~l~m~d~d~I~v~l~l   84 (87)
T cd01763          12 INLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQRIRDN-QTPDDLGMEDGDEIEVMLEQ   84 (87)
T ss_pred             EEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeECCCC-CCHHHcCCCCCCEEEEEEec
Confidence            57888999999999999999999999999999999999999999999999976 89999999999999998763

Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.

>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements

Probab=99.51  E-value=9.6e-14  Score=106.12  Aligned_cols=85  Identities=21%  Similarity=0.353  Sum_probs=64.3

Q ss_pred             EEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEE-EEEECCeEEEeEEEEecCC
Q psy8018         152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMV-QIAIENDFLTTSFSVLEDQ  230 (280)
Q Consensus       152 i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~-~i~IG~~~~~~~~~Vl~~~  230 (280)
                      +++.|||+|+.|||||||+.|+++.+.|+++.+.   .  ......|+|+....-..... .+++|+......+.|.+. 
T Consensus         1 ~~v~InG~~~~fLvDTGA~~tii~~~~a~~~~~~---~--~~~~v~gagG~~~~~v~~~~~~v~vg~~~~~~~~~v~~~-   74 (86)
T cd06095           1 VTITVEGVPIVFLVDTGATHSVLKSDLGPKQELS---T--TSVLIRGVSGQSQQPVTTYRTLVDLGGHTVSHSFLVVPN-   74 (86)
T ss_pred             CEEEECCEEEEEEEECCCCeEEECHHHhhhccCC---C--CcEEEEeCCCcccccEEEeeeEEEECCEEEEEEEEEEcC-
Confidence            4789999999999999999999999999998221   1  22356777765411111122 699999988888888875 


Q ss_pred             Ccccccchhhhh
Q psy8018         231 PMDMLLGLDMLK  242 (280)
Q Consensus       231 ~~d~ILG~D~L~  242 (280)
                      ..+.|||||||+
T Consensus        75 ~~~~lLG~dfL~   86 (86)
T cd06095          75 CPDPLLGRDLLS   86 (86)
T ss_pred             CCCcEechhhcC
Confidence            368999999995

This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where

>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP

Probab=99.50  E-value=2.7e-14  Score=106.45  Aligned_cols=57  Identities=28%  Similarity=0.414  Sum_probs=51.0

Q ss_pred             EeCC-CccHHHHHHHHHHHh--CCC-CcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018          16 DVSE-DLELENFKAFCEVQS--GIS-AQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus        16 eV~~-~~tV~~LK~~Ie~e~--gip-~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|+| ++||++||++|++++  |+| +++|+|+|.||+|.|+ +||++|||++|++|||+++
T Consensus        15 ~~~~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~-~TL~dygI~~gstlhLv~~   75 (75)
T cd01815          15 DVSPGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDD-QTLDFYGIQSGSTIHILRK   75 (75)
T ss_pred             CcCCccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCC-CcHHHcCCCCCCEEEEEeC
Confidence            4555 899999999999996  575 9999999999999986 9999999999999999874

BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.

>KOG0004|consensus

Probab=99.47  E-value=2.8e-14  Score=118.85  Aligned_cols=72  Identities=31%  Similarity=0.454  Sum_probs=70.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+++.+.+.++||+++.||+++|++|+..+|||+++|+|+|.|++|.|+ +||++|+|+..++|+|+.+
T Consensus         1 m~ifVk~l~~kti~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLedg-rtlSDY~Iqkestl~l~l~   72 (156)
T KOG0004|consen    1 MQIFVKTLTGKTITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   72 (156)
T ss_pred             CccchhhccccceeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccccC-CccccccccccceEEEEEE
Confidence            89999999999999999999999999999999999999999999999999987 9999999999999999986

>KOG0010|consensus

Probab=99.44  E-value=1.7e-13  Score=132.20  Aligned_cols=71  Identities=28%  Similarity=0.465  Sum_probs=68.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      ++|+||+.++ ++.+.|..+.||.+||++|...+++|+++|+|||.||+|+|+ +||..|||+||.||||++|
T Consensus        16 irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~-dTL~~~gI~Dg~TvHLVik   86 (493)
T KOG0010|consen   16 IRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDD-DTLKQYGIQDGHTVHLVIK   86 (493)
T ss_pred             eEEEEecCCc-ceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccCh-hhHHHcCCCCCcEEEEEec
Confidence            3799999888 999999999999999999999999999999999999999986 8999999999999999998

>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family

Probab=99.41  E-value=2.3e-12  Score=102.69  Aligned_cols=92  Identities=18%  Similarity=0.245  Sum_probs=69.7

Q ss_pred             EEEEEEEcCCCccee-cCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEecCCCcccccc
Q psy8018         159 HPVKAFIDSGAQTTI-MSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLG  237 (280)
Q Consensus       159 ~~v~alVDTGAq~ti-is~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~~~~~d~ILG  237 (280)
                      .+++|+|||||+..+ ++++.|+++||......+. .  .+-| .....++....+.+|+....+.+.+.+..+ +.|||
T Consensus        15 ~~v~~LVDTGat~~~~l~~~~a~~lgl~~~~~~~~-~--tA~G-~~~~~~v~~~~v~igg~~~~~~v~~~~~~~-~~LLG   89 (107)
T TIGR03698        15 MEVRALVDTGFSGFLLVPPDIVNKLGLPELDQRRV-Y--LADG-REVLTDVAKASIIINGLEIDAFVESLGYVD-EPLLG   89 (107)
T ss_pred             eEEEEEEECCCCeEEecCHHHHHHcCCCcccCcEE-E--ecCC-cEEEEEEEEEEEEECCEEEEEEEEecCCCC-ccEec
Confidence            489999999999997 9999999999987532211 1  2223 234455677899999988765544444333 79999


Q ss_pred             hhhhhcceEEEEecccEE
Q psy8018         238 LDMLKRHQVQIAIENDFL  255 (280)
Q Consensus       238 ~D~L~~~~~~ID~~~~~L  255 (280)
                      |.||.+++..||++++++
T Consensus        90 ~~~L~~l~l~id~~~~~~  107 (107)
T TIGR03698        90 TELLEGLGIVIDYRNQGL  107 (107)
T ss_pred             HHHHhhCCEEEehhhCcC
Confidence            999999999999998764

Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.

>KOG0011|consensus

Probab=99.41  E-value=4.4e-13  Score=123.76  Aligned_cols=73  Identities=22%  Similarity=0.445  Sum_probs=70.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhC--CCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG--ISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~g--ip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+||||++.++.|+++|.|+.||.++|.+|+.+.|  +|++.|+|||+||+|.|+ .|+++|+|++++.|+++..+
T Consensus         1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~GkiL~D~-~tv~Eykv~E~~fiVvMlsK   75 (340)
T KOG0011|consen    1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKILKDE-TTVGEYKVKEKKFIVVMLSK   75 (340)
T ss_pred             CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecceeccCC-cchhhhccccCceEEEEEec
Confidence            89999999999999999999999999999999999  999999999999999986 99999999999999998763

>cd01795 USP48_C USP ubiquitin-specific protease

Probab=99.35  E-value=2.1e-12  Score=100.31  Aligned_cols=62  Identities=21%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018          12 CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus        12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      ..+++|+++.||.+||.+|...+++||.+|+|+|+|+.|.|+++||++|||..|+.|.|...
T Consensus        16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid   77 (107)
T cd01795          16 EKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD   77 (107)
T ss_pred             CceEEeCccccHHHHHHHHHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence            46799999999999999999999999999999999999999999999999999999999885

The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,

>cd01769 UBL Ubiquitin-like domain of UBL

Probab=99.34  E-value=4.6e-12  Score=91.28  Aligned_cols=68  Identities=35%  Similarity=0.535  Sum_probs=63.0

Q ss_pred             EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+..+|..+.++++++.||++||++|+..+|+|++.|+|+|+|+.|.|+ .+|++||+++|+.|++..
T Consensus         1 ~v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~l~d~-~~l~~~~v~~~~~i~v~~   68 (69)
T cd01769           1 TVKTLTGKTFELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKILKDD-KTLSDYGIQDGSTLHLVL   68 (69)
T ss_pred             CeEccCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcCCCCc-CCHHHCCCCCCCEEEEEE
Confidence            36777899999999999999999999999999999999999999999865 899999999999999864

UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.

>COG3577 Predicted aspartyl protease [General function prediction only]

Probab=99.30  E-value=8.7e-12  Score=108.76  Aligned_cols=97  Identities=25%  Similarity=0.336  Sum_probs=76.5

Q ss_pred             eeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccc-cccceeeeeecCceeeEEeEEEEEEEEECCeEE-EeEE
Q psy8018         147 VIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRL-IDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFL-TTSF  224 (280)
Q Consensus       147 ~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~-~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~-~~~~  224 (280)
                      ..|++++..|||++++++|||||+...++.+.|+|+|+..- .+..+. +...-| ...-..+...+++||++.+ .++.
T Consensus       103 ~GHF~a~~~VNGk~v~fLVDTGATsVal~~~dA~RlGid~~~l~y~~~-v~TANG-~~~AA~V~Ld~v~IG~I~~~nV~A  180 (215)
T COG3577         103 DGHFEANGRVNGKKVDFLVDTGATSVALNEEDARRLGIDLNSLDYTIT-VSTANG-RARAAPVTLDRVQIGGIRVKNVDA  180 (215)
T ss_pred             CCcEEEEEEECCEEEEEEEecCcceeecCHHHHHHhCCCccccCCceE-EEccCC-ccccceEEeeeEEEccEEEcCchh
Confidence            37999999999999999999999999999999999999755 232221 112222 3445677788999999755 5899


Q ss_pred             EEecCCCcc-cccchhhhhcce
Q psy8018         225 SVLEDQPMD-MLLGLDMLKRHQ  245 (280)
Q Consensus       225 ~Vl~~~~~d-~ILG~D~L~~~~  245 (280)
                      .|+++...| .||||+||.+..
T Consensus       181 ~V~~~g~L~~sLLGMSfL~rL~  202 (215)
T COG3577         181 MVAEDGALDESLLGMSFLNRLS  202 (215)
T ss_pred             heecCCccchhhhhHHHHhhcc
Confidence            999876554 999999999865

>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins

Probab=99.27  E-value=2.1e-11  Score=89.62  Aligned_cols=70  Identities=24%  Similarity=0.350  Sum_probs=65.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-cceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISA-QEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |+|+|+..+|+.+.+.|.++.++..|++......|+|+ +..+|+|+|+.|..+ +|+++||+++||+|.+.
T Consensus         1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~L~~~-~T~~~~~ied~d~Idv~   71 (72)
T PF11976_consen    1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKRLDPN-DTPEDLGIEDGDTIDVI   71 (72)
T ss_dssp             EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEEE-TT-SCHHHHT-STTEEEEEE
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEEcCCC-CCHHHCCCCCCCEEEEE
Confidence            68999999999999999999999999999999999999 999999999999875 89999999999999885

SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....

>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases

Probab=99.22  E-value=1.4e-10  Score=83.59  Aligned_cols=89  Identities=33%  Similarity=0.529  Sum_probs=67.1

Q ss_pred             EEEEEcCEEEEEEEcCCCcceecCHHHHHHcCC-ccccccceeeeeecCc--eeeEEeEEEEEEEEECCeEEEeEEEEec
Q psy8018         152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNI-TRLIDTRWAGIAKGVG--VQRIIGRIHMVQIAIENDFLTTSFSVLE  228 (280)
Q Consensus       152 i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL-~~~~d~r~~g~a~gvG--~~~~~g~i~~~~i~IG~~~~~~~~~Vl~  228 (280)
                      +++.+||.++.+++||||+.++++..++.+.++ ........  ...++.  .....+.+....+.+++..+...|.+.+
T Consensus         1 ~~~~~~~~~~~~liDtgs~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   78 (92)
T cd00303           1 LKGKINGVPVRALVDSGASVNFISESLAKKLGLPPRLLPTPL--KVKGANGSSVKTLGVILPVTIGIGGKTFTVDFYVLD   78 (92)
T ss_pred             CEEEECCEEEEEEEcCCCcccccCHHHHHHcCCCcccCCCce--EEEecCCCEeccCcEEEEEEEEeCCEEEEEEEEEEc
Confidence            468899999999999999999999999999987 32222222  112222  2222333355688999988999999999


Q ss_pred             CCCcccccchhhhh
Q psy8018         229 DQPMDMLLGLDMLK  242 (280)
Q Consensus       229 ~~~~d~ILG~D~L~  242 (280)
                      ....|+|||+|||+
T Consensus        79 ~~~~~~ilG~~~l~   92 (92)
T cd00303          79 LLSYDVILGRPWLE   92 (92)
T ss_pred             CCCcCEEecccccC
Confidence            88999999999985

The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples

>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B

Probab=99.17  E-value=1.5e-10  Score=88.45  Aligned_cols=71  Identities=27%  Similarity=0.434  Sum_probs=59.4

Q ss_pred             EEEEEcCCCcEEEEE--eCCCccHHHHHHHHHHHhCCCCcceEE-EECCe-----eeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLD--VSEDLELENFKAFCEVQSGISAQEIAI-EFQGN-----ALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~le--V~~~~tV~~LK~~Ie~e~gip~~~Q~L-i~~Gk-----~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .|+|+... ..+..|  +++++||.+||++++..+|+||..|+| +|+|+     .|.+|.++|++||+++|..||+.-.
T Consensus         3 ~v~i~~~~-~~~~~ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~   81 (84)
T cd01789           3 TVNITSSA-DSFSFEKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV   81 (84)
T ss_pred             EEEEEeCC-CceeeeEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence            45666533 244454  999999999999999999999999999 58988     6867779999999999999999863

Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.

>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4

Probab=99.16  E-value=5.3e-11  Score=94.86  Aligned_cols=71  Identities=11%  Similarity=-0.008  Sum_probs=60.7

Q ss_pred             EEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHh-----CCC--CcceEEEECCeeeCCCcCCccccC------CCCCCE
Q psy8018           2 KVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQS-----GIS--AQEIAIEFQGNALVDNKKTLKDYN------IQDGDL   67 (280)
Q Consensus         2 ~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~-----gip--~~~Q~Li~~Gk~L~d~~~tL~~~g------I~~gd~   67 (280)
                      .|.++..+|. +=+.-++++.||++||++|+++.     |+|  +++|+|||.||+|.|+ +||++|+      +.-..|
T Consensus         6 e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~-~TL~d~~~p~g~~~~~~~T   84 (113)
T cd01814           6 EIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENS-KTVGECRSPVGDIAGGVIT   84 (113)
T ss_pred             EEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCC-CcHHHhCCcccccCCCceE
Confidence            3566777774 44788999999999999999554     555  9999999999999986 9999999      778899


Q ss_pred             EEEEEe
Q psy8018          68 VLLKRV   73 (280)
Q Consensus        68 l~l~~~   73 (280)
                      +||+.+
T Consensus        85 mHvvlr   90 (113)
T cd01814          85 MHVVVQ   90 (113)
T ss_pred             EEEEec
Confidence            999997

NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.

>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease

Probab=99.00  E-value=1.5e-09  Score=80.27  Aligned_cols=46  Identities=24%  Similarity=0.398  Sum_probs=41.2

Q ss_pred             eeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCcccccc
Q psy8018         145 GSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDT  190 (280)
Q Consensus       145 ~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~  190 (280)
                      .....++++|.|||+++.+++||||++||||.++|+|||++.....
T Consensus         4 ~~~g~~~v~~~I~g~~~~alvDtGat~~fis~~~a~rLgl~~~~~~   49 (72)
T PF13975_consen    4 PDPGLMYVPVSIGGVQVKALVDTGATHNFISESLAKRLGLPLEKPP   49 (72)
T ss_pred             ccCCEEEEEEEECCEEEEEEEeCCCcceecCHHHHHHhCCCcccCC
Confidence            3457899999999999999999999999999999999999877443

>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats

Probab=99.00  E-value=3.6e-09  Score=82.22  Aligned_cols=86  Identities=20%  Similarity=0.237  Sum_probs=66.9

Q ss_pred             EEEEcC-EEEEEEEcCCCcceecCHHHHHHcC---CccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEec
Q psy8018         153 NCRVNG-HPVKAFIDSGAQTTIMSAACAARVN---ITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLE  228 (280)
Q Consensus       153 ~~~InG-~~v~alVDTGAq~tiis~~~A~rlg---L~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~  228 (280)
                      ...||| +++++.|||||+.|+|+.+..+++|   ...+..+...-.+.+-+.....|. ..+.+++++..+++.|.|++
T Consensus         2 ~~~i~g~~~v~~~vDtGA~vnllp~~~~~~l~~~~~~~L~~t~~~L~~~~g~~~~~~G~-~~~~v~~~~~~~~~~f~Vvd   80 (93)
T cd05481           2 DMKINGKQSVKFQLDTGATCNVLPLRWLKSLTPDKDPELRPSPVRLTAYGGSTIPVEGG-VKLKCRYRNPKYNLTFQVVK   80 (93)
T ss_pred             ceEeCCceeEEEEEecCCEEEeccHHHHhhhccCCCCcCccCCeEEEeeCCCEeeeeEE-EEEEEEECCcEEEEEEEEEC
Confidence            468999 9999999999999999999999998   555544444333344344566787 45799999999999999998


Q ss_pred             CCCcccccchhh
Q psy8018         229 DQPMDMLLGLDM  240 (280)
Q Consensus       229 ~~~~d~ILG~D~  240 (280)
                      . +..-|||++.
T Consensus        81 ~-~~~~lLG~~~   91 (93)
T cd05481          81 E-EGPPLLGAKA   91 (93)
T ss_pred             C-CCCceEcccc
Confidence            5 3556788653

Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi

>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.94  E-value=1.1e-08  Score=86.61  Aligned_cols=95  Identities=18%  Similarity=0.376  Sum_probs=76.6

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCcccccc--ceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEE
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDT--RWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSV  226 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~--r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~V  226 (280)
                      -..++..++|.++++|+||||-.|||+++.+++|+|+.....  +|.|...+  .....-.....++.+++..++..++|
T Consensus        34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~di~~kL~L~~~~app~~fRG~vs~--~~~~tsEAv~ld~~i~n~~i~i~aYV  111 (177)
T PF12384_consen   34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSDIVEKLELPTHDAPPFRFRGFVSG--ESATTSEAVTLDFYIDNKLIDIAAYV  111 (177)
T ss_pred             EEEEEEeecCcEEEEEEeCCCccceeehhhHHhhCCccccCCCEEEeeeccC--CceEEEEeEEEEEEECCeEEEEEEEE
Confidence            356788899999999999999999999999999999977332  34444333  22333444455899999999999999


Q ss_pred             ecCCCcccccchhhhhcce
Q psy8018         227 LEDQPMDMLLGLDMLKRHQ  245 (280)
Q Consensus       227 l~~~~~d~ILG~D~L~~~~  245 (280)
                      .+.-+.|+|+|.+.|++|.
T Consensus       112 ~d~m~~dlIIGnPiL~ryp  130 (177)
T PF12384_consen  112 TDNMDHDLIIGNPILDRYP  130 (177)
T ss_pred             eccCCcceEeccHHHhhhH
Confidence            9988999999999999875

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].

>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A

Probab=98.91  E-value=5.6e-09  Score=79.89  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=58.4

Q ss_pred             EEEEEcCCC--cEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC----C---eeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           2 KVTVTSLDN--ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ----G---NALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         2 ~ItV~~~~g--~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~----G---k~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+|+...-  ......+++++||.+||.+|+..+|+|++.|+|.+.    |   ..+.|+.++|.+||+++|+.|++.-
T Consensus         3 ~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D   82 (87)
T PF14560_consen    3 KLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD   82 (87)
T ss_dssp             EEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred             EEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence            567775443  588899999999999999999999999999999875    2   2255677999999999999999987


Q ss_pred             e
Q psy8018          73 V   73 (280)
Q Consensus        73 ~   73 (280)
                      .
T Consensus        83 ~   83 (87)
T PF14560_consen   83 T   83 (87)
T ss_dssp             -
T ss_pred             C
Confidence            4

>KOG4248|consensus

Probab=98.91  E-value=1.9e-09  Score=111.59  Aligned_cols=71  Identities=24%  Similarity=0.477  Sum_probs=68.1

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      .|+||+++.++.++.|...+||.+||.+|.++.+|+.+.|||||.|++|.|| +++++||| ||-+|||+-|.
T Consensus         4 ~v~vktld~r~~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grvl~~~-k~vq~~~v-dgk~~hlverp   74 (1143)
T KOG4248|consen    4 NVLVKTLDSRTRTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRVLQDD-KKVQEYNV-DGKVIHLVERP   74 (1143)
T ss_pred             ceeeeecccceeEEEechHHHHHHHHHHHHHhcccccccceeeecceeeccc-hhhhhccC-CCeEEEeeccC
Confidence            3789999999999999999999999999999999999999999999999987 99999999 99999999883

>PLN02560 enoyl-CoA reductase

Probab=98.88  E-value=5.6e-09  Score=97.68  Aligned_cols=71  Identities=30%  Similarity=0.416  Sum_probs=63.1

Q ss_pred             CEEEEEcCCCcEE---EEEeCCCccHHHHHHHHHHHhCC-CCcceEEEEC---C----eeeCCCcCCccccCCCCCCEEE
Q psy8018           1 MKVTVTSLDNECF---LLDVSEDLELENFKAFCEVQSGI-SAQEIAIEFQ---G----NALVDNKKTLKDYNIQDGDLVL   69 (280)
Q Consensus         1 M~ItV~~~~g~~~---~leV~~~~tV~~LK~~Ie~e~gi-p~~~Q~Li~~---G----k~L~d~~~tL~~~gI~~gd~l~   69 (280)
                      |+|+|+..+|+.+   ++||+++.||++||..|++..++ ++++|+|++.   |    +.|.|+ +||+++|+++|++|+
T Consensus         1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~-ktL~d~gv~~gstLy   79 (308)
T PLN02560          1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDS-KSLKDYGLGDGGTVV   79 (308)
T ss_pred             CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCC-CCHHhcCCCCCceEE
Confidence            8999998888887   89999999999999999999987 8999999982   4    377765 899999999999998


Q ss_pred             EEE
Q psy8018          70 LKR   72 (280)
Q Consensus        70 l~~   72 (280)
                      +.-
T Consensus        80 ~kD   82 (308)
T PLN02560         80 FKD   82 (308)
T ss_pred             EEe
Confidence            865

>KOG0001|consensus

Probab=98.84  E-value=3e-08  Score=70.86  Aligned_cols=70  Identities=34%  Similarity=0.476  Sum_probs=66.0

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +++.+..|+.+++++.+..+++.+|..|+...|+|+.+|++.+.|++|.|+ .+|.+|+|..+.++++..+
T Consensus         2 ~~~~~~~gk~~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~l~d~-~~l~~~~i~~~~~~~l~~~   71 (75)
T KOG0001|consen    2 IFVKTLDGKTITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKPLEDG-RTLADYNIQEGSTLHLVLS   71 (75)
T ss_pred             EEEEecCCCEEEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEECcCC-CcHHHhCCCCCCEEEEEEe
Confidence            567788999999999999999999999999999999999999999999986 9999999999999998875

>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway

Probab=98.71  E-value=2.6e-08  Score=75.50  Aligned_cols=70  Identities=26%  Similarity=0.340  Sum_probs=43.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC--C-eee-CCCcCCccccCCCCCCEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ--G-NAL-VDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~--G-k~L-~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |-|.|++.+| .+-++++|++|+.+|+++|++.+++|.+.|.|+.+  + ..| .++++||+++||+.||+|+|.
T Consensus         5 milRvrS~dG-~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~   78 (80)
T PF11543_consen    5 MILRVRSKDG-MKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK   78 (80)
T ss_dssp             -EEEEE-SSE-EEEEEE-TTSBHHHHHHHHHHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred             EEEEEECCCC-CEEEEcCCcccHHHHHHHHHHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence            5577888777 66699999999999999999999999999998642  2 234 345689999999999999985

Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.

>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=3.8e-07  Score=73.89  Aligned_cols=94  Identities=15%  Similarity=0.222  Sum_probs=71.5

Q ss_pred             EEEEEEcCCCc-ceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEecCCCcccccch
Q psy8018         160 PVKAFIDSGAQ-TTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGL  238 (280)
Q Consensus       160 ~v~alVDTGAq-~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~~~~~d~ILG~  238 (280)
                      -..+|||||++ ..+++++.|+++|+++....+.  + .+-|+ ...-.++.+.++|++........+.+..+.+ ++|+
T Consensus        26 ~~~~LiDTGFtg~lvlp~~vaek~~~~~~~~~~~--~-~a~~~-~v~t~V~~~~iki~g~e~~~~Vl~s~~~~~~-liG~  100 (125)
T COG5550          26 VYDELIDTGFTGYLVLPPQVAEKLGLPLFSTIRI--V-LADGG-VVKTSVALATIKIDGVEKVAFVLASDNLPEP-LIGV  100 (125)
T ss_pred             EeeeEEecCCceeEEeCHHHHHhcCCCccCChhh--h-hhcCC-EEEEEEEEEEEEECCEEEEEEEEccCCCccc-chhh
Confidence            44569999999 9999999999999997733332  1 22222 3345688889999998776655555555666 9999


Q ss_pred             hhhhcceEEEEecccEEEee
Q psy8018         239 DMLKRHQVQIAIENDFLTTS  258 (280)
Q Consensus       239 D~L~~~~~~ID~~~~~L~i~  258 (280)
                      +||+.....+|++.++|+-+
T Consensus       101 ~~lk~l~~~vn~~~g~LEk~  120 (125)
T COG5550         101 NLLKLLGLVVNPKTGKLEKP  120 (125)
T ss_pred             hhhhhccEEEcCCcceEecc
Confidence            99999999999999998643

>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13

Probab=98.64  E-value=9.2e-08  Score=71.60  Aligned_cols=69  Identities=19%  Similarity=0.293  Sum_probs=54.3

Q ss_pred             EEEEEcCC-CcEEEEEeC-CCccHHHHHHHHHHHhC-CCCcceEEE--ECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTSLD-NECFLLDVS-EDLELENFKAFCEVQSG-ISAQEIAIE--FQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~~~-g~~~~leV~-~~~tV~~LK~~Ie~e~g-ip~~~Q~Li--~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      .|+++..+ .....++++ ++.||++||..|+...+ +|++.|+|.  +.|+.|.|+ +||++||+++|++|++.
T Consensus         2 ~i~~~~~~~k~~~~~~~~~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~L~d~-~tL~~~gv~~g~~lyvK   75 (77)
T cd01801           2 EILDAKRSDKPIGKLKVSSGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKSLKDD-DTLVDLGVGAGATLYVR   75 (77)
T ss_pred             eeeccccCcCceeecccCCCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcccCCc-ccHhhcCCCCCCEEEEe
Confidence            34555444 333335554 89999999999999876 589999995  799999876 79999999999999874

Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.

>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein

Probab=98.57  E-value=4.9e-08  Score=76.38  Aligned_cols=44  Identities=20%  Similarity=0.329  Sum_probs=42.3

Q ss_pred             ccccchhhhhcceEEEEecccEEEeeeeecCCCccceeeccchhhccC
Q psy8018         233 DMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ  280 (280)
Q Consensus       233 d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~~~~~~~  280 (280)
                      --|+|    |-|.+.|-+....+..+.+++|++++||+||||||||||
T Consensus        53 ~kiiG----rih~~~ikig~~~~~CSftVld~~~~d~llGLdmLkrhq   96 (103)
T cd05480          53 VKVIG----QIERLVLQLGQLTVECSAQVVDDNEKNFSLGLQTLKSLK   96 (103)
T ss_pred             eeEee----EEEEEEEEeCCEEeeEEEEEEcCCCcceEeeHHHHhhcc
Confidence            47889    999999999999999999999999999999999999998

Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.

>cd00196 UBQ Ubiquitin-like proteins

Probab=98.54  E-value=5e-07  Score=61.11  Aligned_cols=67  Identities=27%  Similarity=0.373  Sum_probs=59.9

Q ss_pred             EEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           5 VTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         5 V~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+..++....+.++++.|+++||+.|..+.|++++.|.|+++|..+.+. ..+.++++.+|+.|++..
T Consensus         2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~   68 (69)
T cd00196           2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDS-LTLEDYGLQDGDELVLVP   68 (69)
T ss_pred             eEecCCCEEEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEe
Confidence            3344788899999999999999999999999999999999999999865 677899999999999864

Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.

>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.46  E-value=8.3e-07  Score=78.00  Aligned_cols=108  Identities=17%  Similarity=0.214  Sum_probs=74.5

Q ss_pred             EEEEEE--EcCE---EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCc-e-eeEEeEEEEEEEEECCeEEEe
Q psy8018         150 LYINCR--VNGH---PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVG-V-QRIIGRIHMVQIAIENDFLTT  222 (280)
Q Consensus       150 l~i~~~--InG~---~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG-~-~~~~g~i~~~~i~IG~~~~~~  222 (280)
                      +||.++  +.|-   .+.++|||||+..+++..+.=.--+   ...+..-...|+. + ..+..++....|.|++..|..
T Consensus         5 iyI~~~i~~~gy~~~~~~~~vDTGAt~C~~~~~iiP~e~w---e~~~~~i~v~~an~~~~~i~~~~~~~~i~I~~~~F~I   81 (201)
T PF02160_consen    5 IYIKVKISFPGYKKFNYHCYVDTGATICCASKKIIPEEYW---EKSKKPIKVKGANGSIIQINKKAKNGKIQIADKIFRI   81 (201)
T ss_pred             EEEEEEEEEcCceeEEEEEEEeCCCceEEecCCcCCHHHH---HhCCCcEEEEEecCCceEEEEEecCceEEEccEEEec
Confidence            455554  5562   5789999999998877654311111   1111112344543 3 566778888899999999988


Q ss_pred             EEEEecCCCcccccchhhhhcceEEEEecccEEEeeeee
Q psy8018         223 SFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSV  261 (280)
Q Consensus       223 ~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~  261 (280)
                      ++.-.-+.+.|+|||++|++.++.-|.+.+ .+.+....
T Consensus        82 P~iYq~~~g~d~IlG~NF~r~y~Pfiq~~~-~I~f~~~~  119 (201)
T PF02160_consen   82 PTIYQQESGIDIILGNNFLRLYEPFIQTED-RIQFHKKG  119 (201)
T ss_pred             cEEEEecCCCCEEecchHHHhcCCcEEEcc-EEEEEeCC
Confidence            766665679999999999999999999974 57776654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis

>cd01788 ElonginB Ubiquitin-like domain of Elongin B

Probab=98.45  E-value=7.6e-07  Score=71.08  Aligned_cols=72  Identities=21%  Similarity=0.127  Sum_probs=60.7

Q ss_pred             CEEEEEcC-CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCC-------CCCCEEEEEE
Q psy8018           1 MKVTVTSL-DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNI-------QDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~-~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI-------~~gd~l~l~~   72 (280)
                      |-+++..- ...++-++..++.||.+||.+|+.-...||++|+|+..+.+|.| ++||++||+       +...+|-|..
T Consensus         1 MdvFlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~kd~qvLeD-~kTL~d~g~t~~~akaq~pA~vgLa~   79 (119)
T cd01788           1 MDVFLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLYKDDQLLDD-GKTLGDCGFTSQTARPQAPATVGLAF   79 (119)
T ss_pred             CceEEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheeecCceeecc-cccHHHcCccccccccCCCCeEEEEE
Confidence            55666543 23455689999999999999999999999999999977787876 499999999       7799999888


Q ss_pred             e
Q psy8018          73 V   73 (280)
Q Consensus        73 ~   73 (280)
                      |
T Consensus        80 r   80 (119)
T cd01788          80 R   80 (119)
T ss_pred             e
Confidence            7

Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.

>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A

Probab=98.40  E-value=2.2e-06  Score=68.90  Aligned_cols=70  Identities=19%  Similarity=0.232  Sum_probs=52.4

Q ss_pred             EEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHh-------CCCCcceEEEECCeeeCCCcCCccccCCCCCC------EE
Q psy8018           3 VTVTSLDNE-CFLLDVSEDLELENFKAFCEVQS-------GISAQEIAIEFQGNALVDNKKTLKDYNIQDGD------LV   68 (280)
Q Consensus         3 ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~-------gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd------~l   68 (280)
                      |.++..+|. +.++..++++||.+||+.|-.+-       -..++..||||.||.|.|+ +||++|++..|+      ++
T Consensus         5 lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~-~tL~~~~~~~~~~~~~~~vm   83 (111)
T PF13881_consen    5 LKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDN-KTLSDCRLPSGETPGGPTVM   83 (111)
T ss_dssp             EEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SS-SBTGGGT--TTSETT--EEE
T ss_pred             EEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCc-CcHHHhCCCCCCCCCCCEEE
Confidence            455567888 88999999999999999998652       1245789999999999975 999999999888      56


Q ss_pred             EEEEe
Q psy8018          69 LLKRV   73 (280)
Q Consensus        69 ~l~~~   73 (280)
                      ||+.+
T Consensus        84 Hlvvr   88 (111)
T PF13881_consen   84 HLVVR   88 (111)
T ss_dssp             EEEE-
T ss_pred             EEEec
Confidence            77775

>cd06094 RP_Saci_like RP_Saci_like, retropepsin family

Probab=98.38  E-value=1e-06  Score=67.74  Aligned_cols=77  Identities=16%  Similarity=0.253  Sum_probs=55.0

Q ss_pred             EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCce--eeEEeEEEEEEEEECCe-EEEeEEEEecCCCccccc
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGV--QRIIGRIHMVQIAIEND-FLTTSFSVLEDQPMDMLL  236 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~--~~~~g~i~~~~i~IG~~-~~~~~~~Vl~~~~~d~IL  236 (280)
                      .+++||||||..|++.....++.    .....+  ..++.++  .++.| .....+.+|.. .++..|.|.+-  ...||
T Consensus         9 ~~~fLVDTGA~vSviP~~~~~~~----~~~~~~--~l~AANgt~I~tyG-~~~l~ldlGlrr~~~w~FvvAdv--~~pIl   79 (89)
T cd06094           9 GLRFLVDTGAAVSVLPASSTKKS----LKPSPL--TLQAANGTPIATYG-TRSLTLDLGLRRPFAWNFVVADV--PHPIL   79 (89)
T ss_pred             CcEEEEeCCCceEeecccccccc----ccCCce--EEEeCCCCeEeeee-eEEEEEEcCCCcEEeEEEEEcCC--Cccee
Confidence            47899999999999998877653    112222  2333333  46677 44558889974 89999999763  34799


Q ss_pred             chhhhhcce
Q psy8018         237 GLDMLKRHQ  245 (280)
Q Consensus       237 G~D~L~~~~  245 (280)
                      |.|||++|+
T Consensus        80 GaDfL~~~~   88 (89)
T cd06094          80 GADFLQHYG   88 (89)
T ss_pred             cHHHHHHcC
Confidence            999999985

Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified

>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases

Probab=98.37  E-value=2.3e-06  Score=65.86  Aligned_cols=86  Identities=16%  Similarity=0.179  Sum_probs=58.6

Q ss_pred             EEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEecCCCc
Q psy8018         153 NCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPM  232 (280)
Q Consensus       153 ~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~~~~~  232 (280)
                      .++|+|+++.|++||||..|+++.....+-.  .....+  -...|+|+....-+.....+++.+.....++.|.++...
T Consensus         2 ~~~i~g~~~~~llDTGAd~Tvi~~~~~p~~w--~~~~~~--~~i~GIGG~~~~~~~~~v~i~i~~~~~~g~vlv~~~~~P   77 (87)
T cd05482           2 TLYINGKLFEGLLDTGADVSIIAENDWPKNW--PIQPAP--SNLTGIGGAITPSQSSVLLLEIDGEGHLGTILVYVLSLP   77 (87)
T ss_pred             EEEECCEEEEEEEccCCCCeEEcccccCCCC--ccCCCC--eEEEeccceEEEEEEeeEEEEEcCCeEEEEEEEccCCCc
Confidence            5789999999999999999999974432211  000111  245688876555556567999988776667777664234


Q ss_pred             ccccchhhhh
Q psy8018         233 DMLLGLDMLK  242 (280)
Q Consensus       233 d~ILG~D~L~  242 (280)
                      .-|+|-|.|.
T Consensus        78 ~nllGRd~L~   87 (87)
T cd05482          78 VNLWGRDILS   87 (87)
T ss_pred             ccEEccccCC
Confidence            4789988773

This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro

>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []

Probab=98.33  E-value=1.7e-06  Score=73.51  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=41.7

Q ss_pred             EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCcee--eEEeEEEE--EEEEECCeEEEeEEEEec
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ--RIIGRIHM--VQIAIENDFLTTSFSVLE  228 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~--~~~g~i~~--~~i~IG~~~~~~~~~Vl~  228 (280)
                      ++++|+|||||.|+|+.++|++|+|+..-. +.  ...|+++.  ...-.+..  ..+.+++..+.+.+.+++
T Consensus        12 ~~~~LlDsGSq~SfIt~~la~~L~L~~~~~-~~--~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~i~alvv~   81 (164)
T PF05585_consen   12 EARALLDSGSQRSFITESLANKLNLPGTGE-KI--LVIGTFGSSSPKSKKCVRVKISSRTSNNSLEIEALVVP   81 (164)
T ss_pred             EEEEEEecCCchhHHhHHHHHHhCCCCCCc-eE--EEEeccCccCccceeEEEEEEEEecCCCceEEEEEecC
Confidence            678999999999999999999999986522 21  22333321  11112222  245555555677777665

However, it seems likely that these proteins act as aspartic peptidases.

>KOG0006|consensus

Probab=97.79  E-value=4.3e-05  Score=70.99  Aligned_cols=71  Identities=17%  Similarity=0.310  Sum_probs=61.1

Q ss_pred             CEEEEEc---CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTS---LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~---~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |.+.|..   ..-..++++|+.+.+|.+||+.++...|+|+++.+++|.||.|.++ .|++.+.+..-+.++++.
T Consensus         1 m~~lvqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKeLs~~-ttv~~cDL~qqs~~hi~~   74 (446)
T KOG0006|consen    1 MIVLVQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKELSND-TTVQNCDLSQQSATHIML   74 (446)
T ss_pred             CeEEEEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccccccC-ceeecccccccchhhhhc
Confidence            5666663   2345678999999999999999999999999999999999999986 899988888888888774

>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2

Probab=97.79  E-value=0.00014  Score=53.96  Aligned_cols=70  Identities=23%  Similarity=0.270  Sum_probs=60.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC----Cee-eCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ----GNA-LVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~----Gk~-L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      .||||+-.++..+++-|+|..+|..+|+.|+...|++- .|+|.|.    -++ |.+ .++|++|||=.+-.|.|.-
T Consensus         1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQepgg~rqlL~s-~~sLA~yGiFs~~~i~lle   75 (80)
T cd01811           1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQEPGGERQLLSS-RKSLADYGIFSKTNICLLE   75 (80)
T ss_pred             CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeecCCcccccccc-cccHhhhcceeccEEEEEe
Confidence            47999988999999999999999999999999999987 9999982    233 454 4899999998888877765

OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.

>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []

Probab=97.75  E-value=7.9e-05  Score=55.95  Aligned_cols=69  Identities=22%  Similarity=0.339  Sum_probs=48.4

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC---c---ceEEE-ECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISA---Q---EIAIE-FQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~---~---~Q~Li-~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      +|||...+|+.+.+.++.+.+|.+|...+-...+.+.   .   ..+|. -+|.+|.++ .||+++||.+||+|.|.
T Consensus         4 rVtv~~~~~~~~Dl~lP~~vpv~~li~~l~~~~~~~~~~~~~~~~~~L~~~~g~~L~~~-~tL~~~gV~dGd~L~L~   79 (79)
T PF08817_consen    4 RVTVDAGNGRQVDLALPADVPVAELIPELVELLGLPGDDPPGHGQWVLARAGGRPLDPD-QTLADAGVRDGDVLVLR   79 (79)
T ss_dssp             EEEEE-TT--EEEEEEETTSBTTHHHHHHHHHS---S---TT-E-EEEG-GGTEEEETT-SBCGGGT--TT-EEEE-
T ss_pred             EEEEEcCCCcEEEEEcCCCCcHHHHHHHHHHHhCCccCCCCCcceEEEEecCCcccCCc-CcHhHcCCCCCCEEEeC
Confidence            4566665578999999999999999999988877643   2   24665 689999865 99999999999999873

Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.

>KOG1872|consensus

Probab=97.73  E-value=9.3e-05  Score=71.96  Aligned_cols=65  Identities=12%  Similarity=0.195  Sum_probs=60.8

Q ss_pred             CCCcEEEEE-eCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           8 LDNECFLLD-VSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         8 ~~g~~~~le-V~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      -.|+.++++ ++.+.|...||+.+...+|+||+.|++.+.|+.+.|| -.+...+|++|.+|+++..
T Consensus        10 W~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~a~dd-~~~~al~iKpn~~lmMmGt   75 (473)
T KOG1872|consen   10 WGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGLAKDD-VDWGALQIKPNETLMMMGT   75 (473)
T ss_pred             ecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccccccc-ccccccccCCCCEEEeecc
Confidence            478999998 9999999999999999999999999999999999986 5788999999999999876

>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.51  E-value=0.0001  Score=60.37  Aligned_cols=46  Identities=54%  Similarity=0.858  Sum_probs=40.2

Q ss_pred             CcccccchhhhhcceEEEEecccEEEeeeeecCCCccceeeccchhhccC
Q psy8018         231 PMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ  280 (280)
Q Consensus       231 ~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~~~~~~~  280 (280)
                      +..-++|    +-|.+.|-+.+..+.++.+++|+.+++|++|+|||||||
T Consensus        75 G~~~i~G----~Ih~~~l~ig~~~~~~s~~Vle~~~~d~llGld~L~~~~  120 (124)
T PF09668_consen   75 GTQKILG----RIHSVQLKIGGLFFPCSFTVLEDQDVDLLLGLDMLKRHK  120 (124)
T ss_dssp             ---EEEE----EEEEEEEEETTEEEEEEEEEETTSSSSEEEEHHHHHHTT
T ss_pred             CcCceeE----EEEEEEEEECCEEEEEEEEEeCCCCcceeeeHHHHHHhC
Confidence            3445777    779999999999999999999999999999999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.

>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast

Probab=97.32  E-value=0.0019  Score=48.33  Aligned_cols=70  Identities=17%  Similarity=0.253  Sum_probs=60.4

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcc-eEEE--ECCeeeCCCc-CCccccCCCCCCEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQE-IAIE--FQGNALVDNK-KTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~-Q~Li--~~Gk~L~d~~-~tL~~~gI~~gd~l~l~   71 (280)
                      +|-|+.++|....-...++.||.+|.+.|+.....+... ..|+  |--+.+.+++ +||+++|+.++.+|+|.
T Consensus         8 ~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~Pr~~l~~~~~~tl~e~~l~p~~~l~v~   81 (82)
T PF00789_consen    8 RIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFPRRELTDEDSKTLEEAGLLPSATLIVE   81 (82)
T ss_dssp             EEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSSTEECCSTTTSBTCCCTTSSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCCCcCCCccccccHHHhcCCCCeEEEEE
Confidence            477889999999999999999999999999998777765 7775  5678886654 89999999999999885

The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....

>KOG1769|consensus

Probab=97.30  E-value=0.0029  Score=49.55  Aligned_cols=74  Identities=16%  Similarity=0.330  Sum_probs=64.2

Q ss_pred             EEEEEc--CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccC
Q psy8018           2 KVTVTS--LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA   76 (280)
Q Consensus         2 ~ItV~~--~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p   76 (280)
                      +|+++.  -++...-+-|.-+..+..|+..-....|++.++.+++|+|+.+..+ .|-++++.++||.|-+..-|..
T Consensus        20 hi~LKV~gqd~~~~~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~rI~~~-~TP~~L~mEd~D~Iev~~~q~g   95 (99)
T KOG1769|consen   20 HINLKVKGQDGSVVVFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQRIRET-HTPADLEMEDGDEIEVVQEQTG   95 (99)
T ss_pred             eEEEEEecCCCCEEEEEeecCChHHHHHHHHHHHcCCccceEEEEECCcCcCCC-CChhhhCCcCCcEEEEEeeccc
Confidence            455554  4567778899999999999999999999999999999999999876 8999999999999998875443

>KOG0012|consensus

Probab=97.21  E-value=0.00019  Score=67.72  Aligned_cols=46  Identities=52%  Similarity=0.884  Sum_probs=42.6

Q ss_pred             CcccccchhhhhcceEEEEecccEEEeeeeecCCCccceeeccchhhccC
Q psy8018         231 PMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ  280 (280)
Q Consensus       231 ~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~~~~~~~  280 (280)
                      +..-|+|    +-|+|.+-..+..|..+.++++.++|||+.|||||||||
T Consensus       286 g~~ki~g----~Ih~~~lki~~~~l~c~ftV~d~~~~d~llGLd~Lrr~~  331 (380)
T KOG0012|consen  286 GTEKILG----RIHQAQLKIEDLYLPCSFTVLDRRDMDLLLGLDMLRRHQ  331 (380)
T ss_pred             Ccccccc----eeEEEEEEeccEeeccceEEecCCCcchhhhHHHHHhcc
Confidence            4556777    789999999999999999999999999999999999997

>KOG4495|consensus

Probab=97.15  E-value=0.00056  Score=53.13  Aligned_cols=63  Identities=21%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             CEEEEEcC-CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE-CCeeeCCCcCCccccCCC
Q psy8018           1 MKVTVTSL-DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF-QGNALVDNKKTLKDYNIQ   63 (280)
Q Consensus         1 M~ItV~~~-~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~-~Gk~L~d~~~tL~~~gI~   63 (280)
                      |.++++.- ...++-++.+++.||-+||.+++.-..-|+++|+|+. +--+|-+|++||+++|..
T Consensus         1 ~~~f~~VrR~kttif~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~eqlL~D~ktL~d~gft   65 (110)
T KOG4495|consen    1 MDVFLRVRRHKTTIFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDTEQLLDDGKTLGDCGFT   65 (110)
T ss_pred             CceeeeeeecceeEEeecCccccHHHHHHHHHHHHhCCCcchheeecCHHHHhhccchhhhcccc
Confidence            44555532 2335568999999999999999999999999999987 442444456999999653

>KOG3206|consensus

Probab=97.14  E-value=0.0065  Score=53.60  Aligned_cols=72  Identities=24%  Similarity=0.332  Sum_probs=58.2

Q ss_pred             EEEEEcCC-CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEE-EECC-----eeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLD-NECFLLDVSEDLELENFKAFCEVQSGISAQEIAI-EFQG-----NALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~-g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~L-i~~G-----k~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      ++.|.+.. .-......++++||.+||.+++-.+|.+++...| +|+|     -.|.|++..|..|+..||-.||+.-.
T Consensus         3 ~v~Iss~~~~~~~Ekr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l~~~~d~~~~~lsn~d~~lg~~~~~Dg~rihviD~   81 (234)
T KOG3206|consen    3 RVVISSSLNDFRTEKRLSNSLTLAQFKDKLELLTGTEAESMELELYDGDDKKVSALSNEDADLGFYKVEDGLRIHVIDS   81 (234)
T ss_pred             EEEEecccccchhhhhcCCcCcHHHHHhhhhhhhCCCccceEEEEEcCCCceeeeccCCcccccccCCCCceEEEEEec
Confidence            35555432 3234567789999999999999999999999998 4665     45777779999999999999999875

>smart00166 UBX Domain present in ubiquitin-regulatory proteins

Probab=97.08  E-value=0.0038  Score=46.78  Aligned_cols=70  Identities=11%  Similarity=0.210  Sum_probs=58.6

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeCCC--cCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALVDN--KKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~d~--~~tL~~~gI~~gd~l~l~   71 (280)
                      +|-|+.++|..+.....++.||++|.+.|....+.+.....|+  |--+.+.++  ++||+++|+.++.+|+|.
T Consensus         6 ~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~t~~Prk~l~~~d~~~tL~e~gL~p~~~l~v~   79 (80)
T smart00166        6 RLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLNSPFPRRTFTKDDYSKTLLELALLPSSTLVLE   79 (80)
T ss_pred             EEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEEeCCCCcCCccccccCCHHHCCCCCceEEEEe
Confidence            5778999999999999999999999999977667666677775  566778643  579999999999999874

Present in FAF1 and Shp1p.

>PF13019 Telomere_Sde2: Telomere stability and silencing

Probab=96.97  E-value=0.043  Score=46.88  Aligned_cols=66  Identities=15%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             CEEEEEcCCC----cEEEEEeCCCccHHHHHHHHHHHhCCCCcce-EEEE-CCeee-CCCcCCccccCCCCCC
Q psy8018           1 MKVTVTSLDN----ECFLLDVSEDLELENFKAFCEVQSGISAQEI-AIEF-QGNAL-VDNKKTLKDYNIQDGD   66 (280)
Q Consensus         1 M~ItV~~~~g----~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q-~Li~-~Gk~L-~d~~~tL~~~gI~~gd   66 (280)
                      |+|+|++.+|    .++++.++++.||.+|+..|....++|+..| .|++ .|+.| .+++..++.+.-.+++
T Consensus         1 i~Vlvss~~g~~lp~tl~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~~n~~l~~~~~~~~s~l~~~~~~   73 (162)
T PF13019_consen    1 INVLVSSFDGLTLPPTLSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTNSNGQLSPSSDIPLSSLLSSSQD   73 (162)
T ss_pred             CeEEEecCCCCCCCCeEEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEeCCCeeCCCccccHHhhccCcCC
Confidence            7899999999    6889999999999999999999999998874 4555 35555 3344567777655544

>COG5417 Uncharacterized small protein [Function unknown]

Probab=96.85  E-value=0.0071  Score=44.94  Aligned_cols=69  Identities=25%  Similarity=0.387  Sum_probs=55.4

Q ss_pred             CEEEEE--cCCCcEEEEEeCCCccHHHHHHHHHHHhCCC--C---cceEEEECCeeeCCCcCCccccCCCCCCEEEE
Q psy8018           1 MKVTVT--SLDNECFLLDVSEDLELENFKAFCEVQSGIS--A---QEIAIEFQGNALVDNKKTLKDYNIQDGDLVLL   70 (280)
Q Consensus         1 M~ItV~--~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip--~---~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l   70 (280)
                      |+|||-  .-+|..+.|-++.-.++..|-..+.+...|.  .   .+.+..-+++.|.++ ..|.+|||.+||.|.+
T Consensus         5 ikVTvD~t~y~g~~yDLrl~d~~pikklIdivwe~~kis~~~reg~~Ikv~nKa~llsgd-~kL~d~~IadGD~Lei   80 (81)
T COG5417           5 IKVTVDFTNYNGGTYDLRLPDYLPIKKLIDIVWESLKISIFDREGTQIKVMNKAQLLSGD-DKLIDYQIADGDILEI   80 (81)
T ss_pred             EEEEEEeEecCCceEEEeccccchHHHHHHHHHHHhhccccccCCCEEEEeccceEecCC-ceEEeccccCCCEEEe
Confidence            345553  3579999999999999999999887776552  2   356777889999876 8999999999999875

>KOG3493|consensus

Probab=96.85  E-value=0.00052  Score=49.57  Aligned_cols=68  Identities=22%  Similarity=0.297  Sum_probs=57.0

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLL   70 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l   70 (280)
                      ++++..--|+...+...+++||.++|.+|++++|--++..+|---+..++|. -+|++|.|.+|--+.|
T Consensus         3 ev~~nDrLGKKVRvKCn~dDtiGD~KKliaaQtGT~~~kivl~k~~~i~kd~-I~L~dyeihdg~~lel   70 (73)
T KOG3493|consen    3 EVVLNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRPEKIVLKKWYTIFKDH-ITLSDYEIHDGMNLEL   70 (73)
T ss_pred             eehhhhhcCceEEEEeCCcccccCHHHHHHHhhCCChhHhHHHhhhhhhhcc-cceeeEEeccCccEEE
Confidence            3455555688999999999999999999999999999988887556666764 8999999999987765

>cd01767 UBX UBX (ubiquitin regulatory X) domain

Probab=96.84  E-value=0.0091  Score=44.31  Aligned_cols=69  Identities=17%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeCC--CcCCccccCCCCCCEEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALVD--NKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~d--~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|-|+.++|........++.||++|.+.|+....- .....|+  |-.+.+.+  .+.||+++|+. ++.+.+..
T Consensus         4 ~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~t~~Pr~~~~~~~~~~TL~e~gL~-~s~~~~~~   76 (77)
T cd01767           4 KIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLMTSFPRRVLTDLDYELTLQEAGLV-NEVVFQRL   76 (77)
T ss_pred             EEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEEeCCCCccCCCCCccCcHHHcCCc-cceEEEEe
Confidence            47788999999999999999999999999877543 4556665  45677865  67899999999 56665543

The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.

>cd01770 p47_UBX p47-like ubiquitin domain

Probab=96.76  E-value=0.0098  Score=44.77  Aligned_cols=67  Identities=15%  Similarity=0.257  Sum_probs=54.5

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCC-CcceEEE--ECCeeeCCCcCCccccCCCCCCEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGIS-AQEIAIE--FQGNALVDNKKTLKDYNIQDGDLVL   69 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip-~~~Q~Li--~~Gk~L~d~~~tL~~~gI~~gd~l~   69 (280)
                      +|-|+.++|+.+......+.||++|.+.|..+.+-+ .....|.  |=.|.|.+++.||+++|+.+ +.|.
T Consensus         6 ~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~fP~k~l~~~~~Tl~eagL~~-s~v~   75 (79)
T cd01770           6 SIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTAFPVKELSDESLTLKEANLLN-AVIV   75 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecCCCCcccCCCCCcHHHCCCcC-cEEE
Confidence            477899999999999999999999999999875432 3456775  66888987789999999985 4444

p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly

Probab=96.70  E-value=0.0092  Score=43.41  Aligned_cols=63  Identities=11%  Similarity=0.125  Sum_probs=45.4

Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEE
Q psy8018           7 SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLL   70 (280)
Q Consensus         7 ~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l   70 (280)
                      ..+++.+++.|.|++++.++-+..-.++|+++++-.|.|++++|.- +-++.-.|+-+|..|.|
T Consensus         3 ~~~~rr~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ldl-slp~R~snL~n~akLeL   65 (65)
T PF11470_consen    3 CYNFRRFKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKPLDL-SLPFRLSNLPNNAKLEL   65 (65)
T ss_dssp             -TTS-EEEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEEESS-S-BHHHH---SS-EEEE
T ss_pred             ccCCcEEEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEEecc-ccceeecCCCCCCEEeC
Confidence            4578899999999999999999999999999999999999999954 58999999999998865

TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.

>cd01772 SAKS1_UBX SAKS1-like UBX domain

Probab=96.58  E-value=0.018  Score=43.20  Aligned_cols=69  Identities=13%  Similarity=0.332  Sum_probs=56.3

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeCC--CcCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALVD--NKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~d--~~~tL~~~gI~~gd~l~l~   71 (280)
                      +|-|+.++|....-..+.+.|+++|.+.|+...+.+ ....|+  |--|.+.+  .++||+++|+.+..+|+|.
T Consensus         6 ~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~~~-~~f~L~t~fPrk~~~~~d~~~TL~elgL~Psa~L~v~   78 (79)
T cd01772           6 RIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTGNG-GPFTLMTPFPRKVFTEDDMEKPLQELGLVPSAVLIVT   78 (79)
T ss_pred             EEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCCCC-CCEEEEeCCCCeECCcccccCCHHHCCCCCceEEEEe
Confidence            577889999999999999999999999999775443 445665  56777853  3589999999999999874

SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi

Probab=96.49  E-value=0.0068  Score=47.55  Aligned_cols=57  Identities=18%  Similarity=0.236  Sum_probs=40.9

Q ss_pred             EEEEEcCCC-cEEEEEeC--CCccHHHHHHHHHHHhC--CCCcceEEEECCeeeCCCcCCccc
Q psy8018           2 KVTVTSLDN-ECFLLDVS--EDLELENFKAFCEVQSG--ISAQEIAIEFQGNALVDNKKTLKD   59 (280)
Q Consensus         2 ~ItV~~~~g-~~~~leV~--~~~tV~~LK~~Ie~e~g--ip~~~Q~Li~~Gk~L~d~~~tL~~   59 (280)
                      .|+|+-.++ --.+|+|+  .+.||..||.+|.+...  ..-..+||+|+||.|.|. ..|+.
T Consensus         2 ~l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~L~d~-t~l~~   63 (97)
T PF10302_consen    2 YLTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRLLNDH-TDLSS   63 (97)
T ss_pred             eEEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcccCcc-chhhh
Confidence            366764331 12567777  79999999999999872  334578999999999975 44443

They contain a characteristic GFDRL sequence motif.

>KOG1639|consensus

Probab=96.40  E-value=0.0069  Score=54.86  Aligned_cols=71  Identities=23%  Similarity=0.388  Sum_probs=54.6

Q ss_pred             CEEEEEcC-CCcEEE-EEeCCCccHHHHH-HHHHHHhCCCCcceEEEE----CCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSL-DNECFL-LDVSEDLELENFK-AFCEVQSGISAQEIAIEF----QGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~-~g~~~~-leV~~~~tV~~LK-~~Ie~e~gip~~~Q~Li~----~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |.||+..- +|...+ .+.+...|+.|++ +....+..+.+..+|+.+    +|++|.|+ .+|++||..+|++|.+.-
T Consensus         1 m~It~~srs~~~~~~~~~~s~~~ti~d~~~~~~~~~~k~~~~~~r~tlr~e~kgkpl~~~-s~l~e~~~~s~~~i~vKD   78 (297)
T KOG1639|consen    1 MEITIASRSKGLRIKEKDLSGSETIDDLLKAISAKNLKITPYRIRLTLRVEPKGKPLIDN-SKLQEYGDGSGATIYVKD   78 (297)
T ss_pred             CceeeeccCCCceeeeecCCCCCcHHHHHHHHHHhhhccCccchhheeeccCCCccccch-hHHHHhccCCCCEEEEec
Confidence            88999864 444555 6777889999999 555666778775555443    79999986 789999999999998864

>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain

Probab=96.40  E-value=0.031  Score=42.72  Aligned_cols=69  Identities=10%  Similarity=0.057  Sum_probs=57.5

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC--eeeC-------CCcCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG--NALV-------DNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G--k~L~-------d~~~tL~~~gI~~gd~l~l~   71 (280)
                      +|-|+.++|+...--...+.||++|.+.|.. .+.+++...|+.+=  |.+.       |.+.||++.|+.+..+|+|.
T Consensus         6 ~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~FPrr~~~~~~~~~~~~~~TL~eaGL~~s~~L~V~   83 (85)
T cd01774           6 KIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNFPRRVLPCLPSEGDPPPPTLLEAGLSNSEVLFVQ   83 (85)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCCCCccccccccccCcCCCCHHHcCCCCccEEEEe
Confidence            5778899999999999999999999999965 45566888888765  7785       34579999999999998874

Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01771 Faf1_UBX Faf1 UBX domain

Probab=95.98  E-value=0.059  Score=40.67  Aligned_cols=70  Identities=17%  Similarity=0.254  Sum_probs=58.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC--CCcCCccccCCCCCCEEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV--DNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~--d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|-|+.++|....-....+.++++|-..+..+ |.++...+|+  |==|++.  |.+.||++.|+.+..+|+|..
T Consensus         6 ~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~-~~~~~~f~L~t~fPRk~~~~~d~~~TL~e~gL~p~~~L~Vee   79 (80)
T cd01771           6 KLRVRTPSGDFLERRFLGDTPLQVLLNFVASK-GYPIDEYKLLSSWPRRDLTQLDPNFTLLELKLYPQETLILEE   79 (80)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-CCCCCCEEEecCCCCCCCcCCCCCCcHHHcCCCCCcEEEEEc
Confidence            57788999999999999999999999999875 7787888886  4456674  445799999999999998853

Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain

Probab=95.85  E-value=0.086  Score=40.11  Aligned_cols=71  Identities=14%  Similarity=0.218  Sum_probs=59.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV--DNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~--d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|-|+.++|+...-....+.++.+|-..++. .|.+++...|+  |==|++.  |.+.||+++|+.+-.+|+|.-|
T Consensus         7 ~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t~FPRr~~~~~d~~~TL~e~GL~P~~~LfVq~r   81 (82)
T cd01773           7 RLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQER   81 (82)
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEecCCCCcccCCcccCCCHHHcCCCCCcEEEEecC
Confidence            5789999999999999999999999999998 57788888887  4456663  3357999999999999998643

Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.

>PF12382 Peptidase_A2E: Retrotransposon peptidase; InterPro: IPR024648 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.61  E-value=0.055  Score=42.66  Aligned_cols=65  Identities=22%  Similarity=0.366  Sum_probs=44.8

Q ss_pred             EEEEcCCCcceecCHHHHHHcCCccccccce-eeeeec-CceeeEEeEEEEEEEEECCeEEEeEEEEecC
Q psy8018         162 KAFIDSGAQTTIMSAACAARVNITRLIDTRW-AGIAKG-VGVQRIIGRIHMVQIAIENDFLTTSFSVLED  229 (280)
Q Consensus       162 ~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g~a~g-vG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~~  229 (280)
                      -.|+|||||.++|..+.++...|+..   .| ..+.+| |=-.++.-+.....|.+.|..+...|.|+..
T Consensus        49 pclidtgaq~niiteetvrahklptr---pw~~sviyggvyp~kinrkt~kl~i~lngisikteflvvkk  115 (137)
T PF12382_consen   49 PCLIDTGAQVNIITEETVRAHKLPTR---PWSQSVIYGGVYPNKINRKTIKLNINLNGISIKTEFLVVKK  115 (137)
T ss_pred             eeEEccCceeeeeehhhhhhccCCCC---cchhheEeccccccccccceEEEEEEecceEEEEEEEEEEe
Confidence            46889999999999999999888632   23 223332 2223444444445788888988888888864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This entry represents a small family of fungal retroviral aspartyl peptidases.

>PF14453 ThiS-like: ThiS-like ubiquitin

Probab=95.50  E-value=0.06  Score=38.16  Aligned_cols=56  Identities=18%  Similarity=0.296  Sum_probs=43.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|.   |  ..+++..+.|+.+||..+..+      .=.++|||-+..+|      +-+++||.|++..|
T Consensus         1 M~I~vN---~--k~~~~~~~~tl~~lr~~~k~~------~DI~I~NGF~~~~d------~~L~e~D~v~~Ikk   56 (57)
T PF14453_consen    1 MKIKVN---E--KEIETEENTTLFELRKESKPD------ADIVILNGFPTKED------IELKEGDEVFLIKK   56 (57)
T ss_pred             CEEEEC---C--EEEEcCCCcCHHHHHHhhCCC------CCEEEEcCcccCCc------cccCCCCEEEEEeC
Confidence            777773   3  357889999999999986643      23789999998765      46899999998764

>COG4067 Uncharacterized protein conserved in archaea [Posttranslational modification, protein turnover, chaperones]

Probab=95.39  E-value=0.046  Score=46.17  Aligned_cols=101  Identities=18%  Similarity=0.224  Sum_probs=64.1

Q ss_pred             EEEEcCE--EEEEEEcCCCcceecCHHHHHHc---CCcc---------cccc-------ceee--eeecCcee--eEEeE
Q psy8018         153 NCRVNGH--PVKAFIDSGAQTTIMSAACAARV---NITR---------LIDT-------RWAG--IAKGVGVQ--RIIGR  207 (280)
Q Consensus       153 ~~~InG~--~v~alVDTGAq~tiis~~~A~rl---gL~~---------~~d~-------r~~g--~a~gvG~~--~~~g~  207 (280)
                      .+.++|-  ..+|=+||||..|.+|..-.++.   |-..         ..+.       ...+  ...+-|++  ..-..
T Consensus        30 ~~~l~~l~~~~kAkiDTGA~TSsL~A~dI~~fkRdGe~WVRF~~~~~~~~~~~~~~~e~pvi~~ikvR~s~~~~~e~RpV  109 (162)
T COG4067          30 WVSLPGLKIQLKAKIDTGAVTSSLSASDIERFKRDGERWVRFRLADTDNLDQRSEECEAPVIRKIKVRSSSGSRAERRPV  109 (162)
T ss_pred             EEEcCcccceeeeeecccceeeeEEeecceeeeeCCceEEEEEeecccCccccceeeccceEEEEEEecCCCCccccccE
Confidence            3455655  57899999999999987643332   1000         0000       0001  11122222  22222


Q ss_pred             EEEEEEEECCeEEEeEEEEecCC--CcccccchhhhhcceEEEEecccE
Q psy8018         208 IHMVQIAIENDFLTTSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDF  254 (280)
Q Consensus       208 i~~~~i~IG~~~~~~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~  254 (280)
                      | ...+.+|+...+..|+.-+-.  .+.+|||--+|+++.+.+|..+..
T Consensus       110 V-~~~l~lG~~~~~~E~tLtDR~~m~Yp~LlGrk~l~~~~~~VDpSr~y  157 (162)
T COG4067         110 V-RLTLCLGGRILPIEFTLTDRSNMRYPVLLGRKALRHFGAVVDPSRKY  157 (162)
T ss_pred             E-EEEEeeCCeeeeEEEEeecccccccceEecHHHHhhCCeEECchhhc
Confidence            3 348999999999999888733  688999999999999999987654

>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases

Probab=95.22  E-value=0.13  Score=39.84  Aligned_cols=84  Identities=18%  Similarity=0.325  Sum_probs=50.0

Q ss_pred             EEEEEcC--EEEEEEEcCCCcceecCHHHHHHcCCc---cc-----------cccceeeeeecCceeeEEeEEEEEEEEE
Q psy8018         152 INCRVNG--HPVKAFIDSGAQTTIMSAACAARVNIT---RL-----------IDTRWAGIAKGVGVQRIIGRIHMVQIAI  215 (280)
Q Consensus       152 i~~~InG--~~v~alVDTGAq~tiis~~~A~rlgL~---~~-----------~d~r~~g~a~gvG~~~~~g~i~~~~i~I  215 (280)
                      +++.|+.  +++.+++|||++.+.+..+-+..|+..   ..           ....+ .+.+|-|+  ..|.+....+.+
T Consensus         1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~~~~~~~~~~sst~~~~~~~~-~~~Y~~g~--~~g~~~~D~v~i   77 (109)
T cd05470           1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYSHSSYDDPSASSTYSDNGCTF-SITYGTGS--LSGGLSTDTVSI   77 (109)
T ss_pred             CEEEeCCCCceEEEEEeCCCCCEEEeCCCCCCcccccccccCCcCCCCCCCCCCcEE-EEEeCCCe--EEEEEEEEEEEE
Confidence            3577765  889999999999888865533333211   11           00111 12345443  456677778999


Q ss_pred             CCeEEE-eEEEEecC--------CCcccccch
Q psy8018         216 ENDFLT-TSFSVLED--------QPMDMLLGL  238 (280)
Q Consensus       216 G~~~~~-~~~~Vl~~--------~~~d~ILG~  238 (280)
                      |+..++ ..|.+...        ...|+||||
T Consensus        78 g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL  109 (109)
T cd05470          78 GDIEVVGQAFGCATDEPGATFLPALFDGILGL  109 (109)
T ss_pred             CCEEECCEEEEEEEecCCccccccccccccCC
Confidence            886543 44544431        356889986

This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=95.15  E-value=0.092  Score=47.94  Aligned_cols=89  Identities=22%  Similarity=0.483  Sum_probs=57.5

Q ss_pred             EEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHH--cCCccccccc----e--ee----eeecCceeeEEeEEEEEEEE
Q psy8018         150 LYINCRVN--GHPVKAFIDSGAQTTIMS-AACAAR--VNITRLIDTR----W--AG----IAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       150 l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~r--lgL~~~~d~r----~--~g----~a~gvG~~~~~g~i~~~~i~  214 (280)
                      .+++++|.  ++++++++|||+..+.+. ..|...  |.-....+..    +  .+    ...|-|.  ..|.+....+.
T Consensus         2 Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~~~~~~y~~~~S~t~~~~~~~~~~~y~~g~--~~G~~~~D~v~   79 (317)
T PF00026_consen    2 YYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSCASSGFYNPSKSSTFSNQGKPFSISYGDGS--VSGNLVSDTVS   79 (317)
T ss_dssp             EEEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHHCTSC-BBGGGSTTEEEEEEEEEEEETTEE--EEEEEEEEEEE
T ss_pred             eEEEEEECCCCeEEEEEEecccceeeeceeccccccccccccccccccccccccceeeeeeeccCcc--cccccccceEe
Confidence            57899997  899999999999988775 333332  2221111111    1  11    2234333  88999999999


Q ss_pred             ECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         215 IENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       215 IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      +|+..++ ..|..+..        ...|+|||+-+
T Consensus        80 ig~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~  114 (317)
T PF00026_consen   80 IGGLTIPNQTFGLADSYSGDPFSPIPFDGILGLGF  114 (317)
T ss_dssp             ETTEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SS
T ss_pred             eeeccccccceeccccccccccccccccccccccC
Confidence            9998766 56666553        25799999983

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>PTZ00013 plasmepsin 4 (PM4); Provisional

Probab=95.13  E-value=0.13  Score=50.80  Aligned_cols=91  Identities=21%  Similarity=0.330  Sum_probs=59.9

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCH-HHH-HHcCCccccccc----------eeeeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA-ACA-ARVNITRLIDTR----------WAGIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~-~~A-~rlgL~~~~d~r----------~~g~a~gvG~~~~~g~i~~~~i  213 (280)
                      .+.|.+++|+  ++++++++|||+..+-+.. .|. ..|.-....+..          ...+.+|-|+  ..|.+....+
T Consensus       137 ~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~~~~yd~s~SsT~~~~~~~~~i~YG~Gs--v~G~~~~Dtv  214 (450)
T PTZ00013        137 IMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT--VKGFFSKDLV  214 (450)
T ss_pred             CEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCccccccCCCccCccCcccccCCcEEEEEECCce--EEEEEEEEEE
Confidence            4678899996  8899999999999998853 332 123222111211          0123456553  6899999999


Q ss_pred             EECCeEEEeEEEEec----------CCCcccccchhh
Q psy8018         214 AIENDFLTTSFSVLE----------DQPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~~~~~Vl~----------~~~~d~ILG~D~  240 (280)
                      .+|+..++..|..+.          ....|+||||.+
T Consensus       215 ~iG~~~~~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~  251 (450)
T PTZ00013        215 TLGHLSMPYKFIEVTDTDDLEPIYSSSEFDGILGLGW  251 (450)
T ss_pred             EECCEEEccEEEEEEeccccccceecccccceecccC
Confidence            999987765554432          125799999975

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=94.91  E-value=0.1  Score=47.24  Aligned_cols=30  Identities=20%  Similarity=0.062  Sum_probs=26.3

Q ss_pred             CcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         231 PMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       231 ~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      ....|||..|||.+-.+.|+.++++-+...
T Consensus       234 ~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~  263 (265)
T cd05476         234 GGVSILGNIQQQNFLVEYDLENSRLGFAPA  263 (265)
T ss_pred             CCcEEEChhhcccEEEEEECCCCEEeeecC
Confidence            445899999999999999999999988654

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>PRK06437 hypothetical protein; Provisional

Probab=94.91  E-value=0.19  Score=36.46  Aligned_cols=58  Identities=16%  Similarity=0.315  Sum_probs=45.8

Q ss_pred             EEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           5 VTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         5 V~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      ++.-++...++++++..||.+|-+.    .|++++.-.+..||+++..      ++-+++||.|.+..
T Consensus         5 ~~v~g~~~~~~~i~~~~tv~dLL~~----Lgi~~~~vaV~vNg~iv~~------~~~L~dgD~Veiv~   62 (67)
T PRK06437          5 IRVKGHINKTIEIDHELTVNDIIKD----LGLDEEEYVVIVNGSPVLE------DHNVKKEDDVLILE   62 (67)
T ss_pred             EEecCCcceEEEcCCCCcHHHHHHH----cCCCCccEEEEECCEECCC------ceEcCCCCEEEEEe
Confidence            3333556678899999999988755    5888888888999999973      35689999999875

>PTZ00147 plasmepsin-1; Provisional

Probab=94.86  E-value=0.17  Score=50.03  Aligned_cols=92  Identities=17%  Similarity=0.320  Sum_probs=60.8

Q ss_pred             eeEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHH-HcCCccccccc----e------eeeeecCceeeEEeEEEEEE
Q psy8018         147 VIMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       147 ~~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~  212 (280)
                      ....|.+++|+  ++++.+++|||++.+-+. ..|.. .|.-....+..    +      ..+.+|-|  ...|.+....
T Consensus       137 n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~~~~~yd~s~SsT~~~~~~~f~i~Yg~G--svsG~~~~Dt  214 (453)
T PTZ00147        137 NVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCETKNLYDSSKSKTYEKDGTKVEMNYVSG--TVSGFFSKDL  214 (453)
T ss_pred             CCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccccCCCccCCccCcceEECCCEEEEEeCCC--CEEEEEEEEE
Confidence            35778999997  889999999999988874 44431 23322222211    0      11345555  3679998889


Q ss_pred             EEECCeEEEeEEEEec----------CCCcccccchhh
Q psy8018         213 IAIENDFLTTSFSVLE----------DQPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~~~~~Vl~----------~~~~d~ILG~D~  240 (280)
                      +.||+..++..|..+.          ....|+||||-|
T Consensus       215 VtiG~~~v~~qF~~~~~~~~f~~~~~~~~~DGILGLG~  252 (453)
T PTZ00147        215 VTIGNLSVPYKFIEVTDTNGFEPFYTESDFDGIFGLGW  252 (453)
T ss_pred             EEECCEEEEEEEEEEEeccCcccccccccccceecccC
Confidence            9999987765554432          125799999976

>KOG0013|consensus

Probab=94.72  E-value=0.061  Score=47.68  Aligned_cols=63  Identities=24%  Similarity=0.346  Sum_probs=55.7

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      .++.+.+.+..-.|+.++|..+.+..|+.+-.|+++|+|++|.+. ..|++|+|..|..-++-.
T Consensus       155 T~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~l~dk-t~LeEc~iekg~rYvlqv  217 (231)
T KOG0013|consen  155 TREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGVLVDK-TDLEECKIEKGQRYVLQV  217 (231)
T ss_pred             hhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCceecc-ccceeeeecCCCEEEEEE
Confidence            577788899999999999999999999999999999999999875 789999999996555443

>PRK05863 sulfur carrier protein ThiS; Provisional

Probab=94.50  E-value=0.18  Score=36.34  Aligned_cols=60  Identities=20%  Similarity=0.228  Sum_probs=45.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|   +|+.++  +++..|+.+|-..    .++|+..-.+.+||..+..  ...+.+ +++||.|.+..
T Consensus         1 m~i~v---NG~~~~--~~~~~tl~~ll~~----l~~~~~~vav~~N~~iv~r--~~~~~~-L~~gD~ieIv~   60 (65)
T PRK05863          1 MIVVV---NEEQVE--VDEQTTVAALLDS----LGFPEKGIAVAVDWSVLPR--SDWATK-LRDGARLEVVT   60 (65)
T ss_pred             CEEEE---CCEEEE--cCCCCcHHHHHHH----cCCCCCcEEEEECCcCcCh--hHhhhh-cCCCCEEEEEe
Confidence            66766   666554  4577887777554    5889999999999998864  244566 99999999876

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=94.48  E-value=0.24  Score=35.47  Aligned_cols=60  Identities=17%  Similarity=0.223  Sum_probs=44.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|   +|+.+.+  + ..|+.+|.+.+    +++++...+-.||+.+..  ...++.-+++||.|.+..
T Consensus         1 m~i~~---Ng~~~~~--~-~~tl~~Ll~~l----~~~~~~vavavN~~iv~~--~~~~~~~L~dgD~Ieiv~   60 (65)
T PRK06488          1 MKLFV---NGETLQT--E-ATTLALLLAEL----DYEGNWLATAVNGELVHK--EARAQFVLHEGDRIEILS   60 (65)
T ss_pred             CEEEE---CCeEEEc--C-cCcHHHHHHHc----CCCCCeEEEEECCEEcCH--HHcCccccCCCCEEEEEE
Confidence            66666   6776666  3 45888887654    677766667899999863  356677899999999876

>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]

Probab=94.46  E-value=0.064  Score=41.39  Aligned_cols=70  Identities=14%  Similarity=0.237  Sum_probs=59.3

Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018           7 SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR   77 (280)
Q Consensus         7 ~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~   77 (280)
                      .-+|...-+.|-.+.+...|........|-..++.|++|+|+.+.-+ +|-++++..+||.|..+..|+.|
T Consensus        31 ~qd~telfFkiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~d-qTP~dldmEdnd~iEav~eQvGG  100 (103)
T COG5227          31 DQDGTELFFKIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLD-QTPGDLDMEDNDEIEAVTEQVGG  100 (103)
T ss_pred             cCCCCEEEEEEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCC-CChhhcCCccchHHHHHHHHhcC
Confidence            44677777899999999999999999999999999999999999765 89999999999988665444433

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=93.74  E-value=0.51  Score=34.42  Aligned_cols=51  Identities=14%  Similarity=0.272  Sum_probs=41.1

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018          12 CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus        12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      ...+++++..|+.+|.+.+    +++++.-.+..||..+..      +.-+++||.|.+..
T Consensus        15 ~~~~~~~~~~tv~~ll~~l----~~~~~~v~v~vNg~iv~~------~~~l~~gD~Veii~   65 (70)
T PRK08364         15 EKEIEWRKGMKVADILRAV----GFNTESAIAKVNGKVALE------DDPVKDGDYVEVIP   65 (70)
T ss_pred             ceEEEcCCCCcHHHHHHHc----CCCCccEEEEECCEECCC------CcCcCCCCEEEEEc
Confidence            5678899999999998765    777777777899999853      34599999998875

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=93.54  E-value=0.54  Score=33.49  Aligned_cols=61  Identities=16%  Similarity=0.371  Sum_probs=45.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|   +|+.  +++++..||.++-..    .+++...-.+.+||..+..  ..-.+.=+++||.|.+..
T Consensus         1 m~i~v---NG~~--~~~~~~~tl~~lL~~----l~~~~~~vav~vNg~iv~r--~~~~~~~l~~gD~vei~~   61 (66)
T PRK05659          1 MNIQL---NGEP--RELPDGESVAALLAR----EGLAGRRVAVEVNGEIVPR--SQHASTALREGDVVEIVH   61 (66)
T ss_pred             CEEEE---CCeE--EEcCCCCCHHHHHHh----cCCCCCeEEEEECCeEeCH--HHcCcccCCCCCEEEEEE
Confidence            66666   5664  466778898887654    6888888888999998863  234445699999998875

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=93.49  E-value=0.58  Score=42.51  Aligned_cols=75  Identities=17%  Similarity=0.275  Sum_probs=54.3

Q ss_pred             EEEEEEEEcC--EEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-eEEE
Q psy8018         149 MLYINCRVNG--HPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-TSFS  225 (280)
Q Consensus       149 ~l~i~~~InG--~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-~~~~  225 (280)
                      ..++++.|+.  +++.+++|||+..+.+.               .+ .+.+|-| ..+.|.+....+.+|+..++ ..|.
T Consensus         2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~---------------~~-~~~Y~~g-~~~~G~~~~D~v~~g~~~~~~~~fg   64 (295)
T cd05474           2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP---------------DF-SISYGDG-TSASGTWGTDTVSIGGATVKNLQFA   64 (295)
T ss_pred             eEEEEEEECCCCcEEEEEEeCCCCcceee---------------ee-EEEeccC-CcEEEEEEEEEEEECCeEecceEEE
Confidence            4678999977  88999999999999888               11 1234433 35678888889999987654 4566


Q ss_pred             Eec-CCCcccccchhh
Q psy8018         226 VLE-DQPMDMLLGLDM  240 (280)
Q Consensus       226 Vl~-~~~~d~ILG~D~  240 (280)
                      +.. ....|+|||+-+
T Consensus        65 ~~~~~~~~~GilGLg~   80 (295)
T cd05474          65 VANSTSSDVGVLGIGL   80 (295)
T ss_pred             EEecCCCCcceeeECC
Confidence            655 346789999764

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=93.46  E-value=0.4  Score=43.57  Aligned_cols=89  Identities=17%  Similarity=0.219  Sum_probs=54.6

Q ss_pred             EEEEEEcC--EEEEEEEcCCCcceecCHHHHHHcCCc--ccccc-----------ceeeeeecCceeeEEeEEEEEEEEE
Q psy8018         151 YINCRVNG--HPVKAFIDSGAQTTIMSAACAARVNIT--RLIDT-----------RWAGIAKGVGVQRIIGRIHMVQIAI  215 (280)
Q Consensus       151 ~i~~~InG--~~v~alVDTGAq~tiis~~~A~rlgL~--~~~d~-----------r~~g~a~gvG~~~~~g~i~~~~i~I  215 (280)
                      +++++|+.  +++.++||||+..+.+..+-+..|...  ...+.           ....+.+|-| ....|.+....+.+
T Consensus         2 ~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~~~~~y~~~~Sst~~~~~~~~~~i~Y~~G-~~~~G~~~~D~v~i   80 (278)
T cd06097           2 LTPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQGGHKLYDPSKSSTAKLLPGATWSISYGDG-SSASGIVYTDTVSI   80 (278)
T ss_pred             eeeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhccCCcCCCccCccceecCCcEEEEEeCCC-CeEEEEEEEEEEEE
Confidence            67889987  889999999999998854322222211  00110           0011234444 24678888889999


Q ss_pred             CCeEEE-eEEEEec--------CCCcccccchhh
Q psy8018         216 ENDFLT-TSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       216 G~~~~~-~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      |+..++ ..|.+..        ....|+||||-+
T Consensus        81 g~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~  114 (278)
T cd06097          81 GGVEVPNQAIELATAVSASFFSDTASDGLLGLAF  114 (278)
T ss_pred             CCEEECCeEEEEEeecCccccccccccceeeecc
Confidence            986554 3344332        236899999964

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=93.40  E-value=0.55  Score=43.79  Aligned_cols=91  Identities=16%  Similarity=0.276  Sum_probs=57.7

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCH-HHHH---HcCCccccccc----e------eeeeecCceeeEEeEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA-ACAA---RVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMV  211 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~-~~A~---rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~  211 (280)
                      ...+++++|.  +++++++||||+..+-+.. .|..   .|.-....+..    +      -.+..|-|  .+.|.+...
T Consensus         7 ~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~SsT~~~~~~~~~~~Yg~g--~~~G~~~~D   84 (326)
T cd05487           7 TQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTACVTHNLYDASDSSTYKENGTEFTIHYASG--TVKGFLSQD   84 (326)
T ss_pred             CeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhhcccCcCCCCCCeeeeECCEEEEEEeCCc--eEEEEEeee
Confidence            4567899997  8899999999999998853 3432   34322222211    0      11234545  368888888


Q ss_pred             EEEECCeEEEeEEEEecC--------CCcccccchhh
Q psy8018         212 QIAIENDFLTTSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       212 ~i~IG~~~~~~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+.+|+....-.|.++..        ...|+|||+-+
T Consensus        85 ~v~~g~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~  121 (326)
T cd05487          85 IVTVGGIPVTQMFGEVTALPAIPFMLAKFDGVLGMGY  121 (326)
T ss_pred             EEEECCEEeeEEEEEEEeccCCccceeecceEEecCC
Confidence            999998655433333321        25789999875

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=93.10  E-value=0.65  Score=33.63  Aligned_cols=61  Identities=15%  Similarity=0.285  Sum_probs=45.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCC-ccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSED-LELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~-~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|   +|+.+  ++++. .||.+|-+.    .++++..-.+-+||..++.  ..-+++-+++||.|.+..
T Consensus         1 m~I~v---NG~~~--~~~~~~~tv~~lL~~----l~~~~~~vav~vN~~iv~r--~~w~~~~L~~gD~iEIv~   62 (67)
T PRK07696          1 MNLKI---NGNQI--EVPESVKTVAELLTH----LELDNKIVVVERNKDILQK--DDHTDTSVFDGDQIEIVT   62 (67)
T ss_pred             CEEEE---CCEEE--EcCCCcccHHHHHHH----cCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEE
Confidence            66666   66655  45554 578777653    5788887888899999973  456777899999999876

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=92.55  E-value=1  Score=32.27  Aligned_cols=61  Identities=13%  Similarity=0.206  Sum_probs=44.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|   +|+.+  ++++..|+.+|.+.    .+++...-.+-.||+.+..  ..-++.-+++||.|.+..
T Consensus         1 m~i~v---Ng~~~--~~~~~~tl~~ll~~----l~~~~~~vaVavN~~iv~r--~~w~~~~L~~gD~Ieii~   61 (66)
T PRK08053          1 MQILF---NDQPM--QCAAGQTVHELLEQ----LNQLQPGAALAINQQIIPR--EQWAQHIVQDGDQILLFQ   61 (66)
T ss_pred             CEEEE---CCeEE--EcCCCCCHHHHHHH----cCCCCCcEEEEECCEEeCh--HHcCccccCCCCEEEEEE
Confidence            67776   56655  45677899888765    4566566777899999963  345556799999999876

>PF15044 CLU_N: Mitochondrial function, CLU-N-term

Probab=92.54  E-value=0.24  Score=36.99  Aligned_cols=56  Identities=20%  Similarity=0.245  Sum_probs=45.9

Q ss_pred             eCCCccHHHHHHHHHHHhC-CCCcceEEEECCeeeCCCcCCcccc-CCCCCCEEEEEEe
Q psy8018          17 VSEDLELENFKAFCEVQSG-ISAQEIAIEFQGNALVDNKKTLKDY-NIQDGDLVLLKRV   73 (280)
Q Consensus        17 V~~~~tV~~LK~~Ie~e~g-ip~~~Q~Li~~Gk~L~d~~~tL~~~-gI~~gd~l~l~~~   73 (280)
                      |+++++|.++++.+..... ..-....|.++|+.|.+. ..|++. |+++|..|.|+.+
T Consensus         1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g~~L~~~-~el~~i~~~~~~~~L~lve~   58 (76)
T PF15044_consen    1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNGQRLDDF-VELSEIEGIKDGCVLELVEE   58 (76)
T ss_pred             CChhhHHHHHHHHHHhCccccceeEEEEEECCCccCCc-hhhhhhhCCCCCcEEEEEec
Confidence            6789999999998876643 456778899999999764 678777 6999999999875

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=92.53  E-value=0.84  Score=42.31  Aligned_cols=100  Identities=15%  Similarity=0.130  Sum_probs=59.7

Q ss_pred             EEEEcCEEE------EEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceee----EEeEEEEEEEEECCeEEE-
Q psy8018         153 NCRVNGHPV------KAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQR----IIGRIHMVQIAIENDFLT-  221 (280)
Q Consensus       153 ~~~InG~~v------~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~----~~g~i~~~~i~IG~~~~~-  221 (280)
                      .++|||..+      .++||||++.+.++.+..+++--.  +....    ...|.-.    .........+.+++..+. 
T Consensus       193 ~v~v~g~~~~~~~~~~~iiDTGts~~~lp~~~~~~l~~~--~~~~~----~~~~~~~~~C~~~~~~P~~~f~f~g~~~~i  266 (317)
T cd05478         193 SVTINGQVVACSGGCQAIVDTGTSLLVGPSSDIANIQSD--IGASQ----NQNGEMVVNCSSISSMPDVVFTINGVQYPL  266 (317)
T ss_pred             EEEECCEEEccCCCCEEEECCCchhhhCCHHHHHHHHHH--hCCcc----ccCCcEEeCCcCcccCCcEEEEECCEEEEE
Confidence            357788765      589999999999999988765211  11000    0011100    001122234556665443 


Q ss_pred             ------------eEEEEecC-CCcccccchhhhhcceEEEEecccEEEee
Q psy8018         222 ------------TSFSVLED-QPMDMLLGLDMLKRHQVQIAIENDFLTTS  258 (280)
Q Consensus       222 ------------~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~  258 (280)
                                  |-+.+... .....|||..||+.+-.+.|+.+++|-|.
T Consensus       267 ~~~~y~~~~~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A  316 (317)
T cd05478         267 PPSAYILQDQGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLA  316 (317)
T ss_pred             CHHHheecCCCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeec
Confidence                        32222221 12458999999999999999999998774

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=92.30  E-value=1.2  Score=41.17  Aligned_cols=100  Identities=13%  Similarity=0.174  Sum_probs=58.5

Q ss_pred             EEEcCEEE-------EEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE----EeEEEEEEEEECCeEEE-
Q psy8018         154 CRVNGHPV-------KAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI----IGRIHMVQIAIENDFLT-  221 (280)
Q Consensus       154 ~~InG~~v-------~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~----~g~i~~~~i~IG~~~~~-  221 (280)
                      +.|||...       .++||||.+.+.++.+..+++--  .+....    ...|.-..    ........+.+++..++ 
T Consensus       188 i~v~g~~~~~~~~~~~~iiDSGtt~~~lP~~~~~~l~~--~~~~~~----~~~~~~~~~C~~~~~~p~l~~~f~g~~~~v  261 (318)
T cd05477         188 FQINGQATGWCSQGCQAIVDTGTSLLTAPQQVMSTLMQ--SIGAQQ----DQYGQYVVNCNNIQNLPTLTFTINGVSFPL  261 (318)
T ss_pred             EEECCEEecccCCCceeeECCCCccEECCHHHHHHHHH--HhCCcc----ccCCCEEEeCCccccCCcEEEEECCEEEEE
Confidence            46777643       58999999999999988877511  011110    00010000    00111234555554333 


Q ss_pred             ------------eEEEEec------CCCcccccchhhhhcceEEEEecccEEEeee
Q psy8018         222 ------------TSFSVLE------DQPMDMLLGLDMLKRHQVQIAIENDFLTTSF  259 (280)
Q Consensus       222 ------------~~~~Vl~------~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~  259 (280)
                                  |-+.+.+      ......|||..|||.+-.+.|+.++++-|..
T Consensus       262 ~~~~y~~~~~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~  317 (318)
T cd05477         262 PPSAYILQNNGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFAT  317 (318)
T ss_pred             CHHHeEecCCCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeee
Confidence                        3233321      1123589999999999999999999988753

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants

Probab=92.13  E-value=0.47  Score=42.85  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=52.9

Q ss_pred             EEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCe--EEE-eEE
Q psy8018         150 LYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIEND--FLT-TSF  224 (280)
Q Consensus       150 l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~--~~~-~~~  224 (280)
                      .+++++|+  .+++.+++|||++.+-+..     |        .+ ...+|- +....|.+....+.+|+.  .++ ..|
T Consensus         2 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~-----~--------~~-~~~Y~d-g~~~~G~~~~D~v~~g~~~~~~~~~~F   66 (265)
T cd05476           2 YLVTLSIGTPPQPFSLIVDTGSDLTWTQC-----C--------SY-EYSYGD-GSSTSGVLATETFTFGDSSVSVPNVAF   66 (265)
T ss_pred             eEEEEecCCCCcceEEEecCCCCCEEEcC-----C--------ce-EeEeCC-CceeeeeEEEEEEEecCCCCccCCEEE
Confidence            46888887  6789999999999888752     2        22 123332 345688888889999986  433 456


Q ss_pred             EEecCC------Ccccccchhh
Q psy8018         225 SVLEDQ------PMDMLLGLDM  240 (280)
Q Consensus       225 ~Vl~~~------~~d~ILG~D~  240 (280)
                      .+....      ..|+||||.+
T Consensus        67 g~~~~~~~~~~~~~~GIlGLg~   88 (265)
T cd05476          67 GCGTDNEGGSFGGADGILGLGR   88 (265)
T ss_pred             EecccccCCccCCCCEEEECCC
Confidence            555432      5899999876

This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which

>PRK07440 hypothetical protein; Provisional

Probab=92.04  E-value=0.98  Score=33.04  Aligned_cols=56  Identities=21%  Similarity=0.349  Sum_probs=43.9

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+.  +++++..||.+|-.    +.++++..-.+-+||..+..  ..-++.-+++||.|.+..
T Consensus        10 NG~~--~~~~~~~tl~~lL~----~l~~~~~~vav~~N~~iv~r--~~w~~~~L~~gD~IEIv~   65 (70)
T PRK07440         10 NGET--RTCSSGTSLPDLLQ----QLGFNPRLVAVEYNGEILHR--QFWEQTQVQPGDRLEIVT   65 (70)
T ss_pred             CCEE--EEcCCCCCHHHHHH----HcCCCCCeEEEEECCEEeCH--HHcCceecCCCCEEEEEE
Confidence            6664  56778889988765    45788888888999999973  356667799999999876

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=92.02  E-value=0.94  Score=33.69  Aligned_cols=66  Identities=11%  Similarity=0.135  Sum_probs=45.1

Q ss_pred             CEEEEEc------CCC-cEEEEEeCCCccHHHHHHHHHHHh-CCCC--cceEEEECCeeeCCCcCCccccCCCCCCEEEE
Q psy8018           1 MKVTVTS------LDN-ECFLLDVSEDLELENFKAFCEVQS-GISA--QEIAIEFQGNALVDNKKTLKDYNIQDGDLVLL   70 (280)
Q Consensus         1 M~ItV~~------~~g-~~~~leV~~~~tV~~LK~~Ie~e~-gip~--~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l   70 (280)
                      |+|+|+.      ..| ...++++++..|+.+|++.+.... ++..  ..-.+..||+...++      +=+++||.|.+
T Consensus         2 m~i~V~~fa~~re~~g~~~~~~~~~~~~tv~~L~~~l~~~~p~l~~~~~~~~vavN~~~v~~~------~~l~dgDeVai   75 (82)
T PLN02799          2 VEIKVLFFARARELTGVSDMTLELPAGSTTADCLAELVAKFPSLEEVRSCCVLALNEEYTTES------AALKDGDELAI   75 (82)
T ss_pred             eEEEEEehHHHHHHhCCCeEEEECCCCCcHHHHHHHHHHHChhHHHHhhCcEEEECCEEcCCC------cCcCCCCEEEE
Confidence            7888872      234 456788889999999999987664 1111  112356788876432      35899999998


Q ss_pred             EE
Q psy8018          71 KR   72 (280)
Q Consensus        71 ~~   72 (280)
                      ..
T Consensus        76 ~P   77 (82)
T PLN02799         76 IP   77 (82)
T ss_pred             eC
Confidence            65

>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins

Probab=91.97  E-value=1.4  Score=39.95  Aligned_cols=95  Identities=13%  Similarity=0.187  Sum_probs=55.0

Q ss_pred             EEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE--EeEEEEEEEEECCeEEE-----------------
Q psy8018         161 VKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI--IGRIHMVQIAIENDFLT-----------------  221 (280)
Q Consensus       161 v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~--~g~i~~~~i~IG~~~~~-----------------  221 (280)
                      ..++||||++.+.++.+..+++--  .+...+... .+......  ... ....+.+++..+.                 
T Consensus       179 ~~~iiDSGt~~~~lP~~~~~~l~~--~~~~~~~~~-~~~~~~~C~~~~~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~  254 (295)
T cd05474         179 LPALLDSGTTLTYLPSDIVDAIAK--QLGATYDSD-EGLYVVDCDAKDD-GSLTFNFGGATISVPLSDLVLPASTDDGGD  254 (295)
T ss_pred             ccEEECCCCccEeCCHHHHHHHHH--HhCCEEcCC-CcEEEEeCCCCCC-CEEEEEECCeEEEEEHHHhEeccccCCCCC
Confidence            579999999999999998887511  011111000 00000000  000 2334555553322                 


Q ss_pred             --eEEEEecCCCcccccchhhhhcceEEEEecccEEEeee
Q psy8018         222 --TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSF  259 (280)
Q Consensus       222 --~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~  259 (280)
                        |-+.+.+...-..|||..||+.+-.+.|+.++++-|..
T Consensus       255 ~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~  294 (295)
T cd05474         255 GACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQ  294 (295)
T ss_pred             CCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeec
Confidence              32333332224589999999999999999999998754

SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases

>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa

Probab=91.96  E-value=1.1  Score=41.42  Aligned_cols=90  Identities=16%  Similarity=0.322  Sum_probs=57.5

Q ss_pred             EEEEEEEEc--CEEEEEEEcCCCcceecCH-HHHH-HcCCccccccc----e------eeeeecCceeeEEeEEEEEEEE
Q psy8018         149 MLYINCRVN--GHPVKAFIDSGAQTTIMSA-ACAA-RVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       149 ~l~i~~~In--G~~v~alVDTGAq~tiis~-~~A~-rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~i~  214 (280)
                      ..++++.|.  ++++.++||||+..+-+.. .|.. .|+-....+..    +      ..+.+|-|+  ..|.+....|.
T Consensus         3 ~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~~~~f~~~~SsT~~~~~~~~~~~Yg~Gs--~~G~~~~D~i~   80 (318)
T cd05477           3 SYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTNHTKFNPSQSSTYSTNGETFSLQYGSGS--LTGIFGYDTVT   80 (318)
T ss_pred             EEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccccCCCCcccCCCceECCcEEEEEECCcE--EEEEEEeeEEE
Confidence            467888997  4889999999999988853 2321 34322122111    0      113345554  57888888999


Q ss_pred             ECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         215 IENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       215 IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      +|+..++ ..|.+...        ...|+|||+-+
T Consensus        81 ~g~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~  115 (318)
T cd05477          81 VQGIIITNQEFGLSETEPGTNFVYAQFDGILGLAY  115 (318)
T ss_pred             ECCEEEcCEEEEEEEecccccccccceeeEeecCc
Confidence            9987665 45665542        23689999974

Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=91.94  E-value=0.98  Score=41.98  Aligned_cols=91  Identities=15%  Similarity=0.260  Sum_probs=57.8

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH--HHcCCccccccc----e------eeeeecCceeeEEeEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA--ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A--~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~  212 (280)
                      ...+++++|+  ++++++++|||+..+.+. ..|.  ..|......+..    +      ..+..|-|+  +.|.+....
T Consensus         9 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~--~~G~~~~D~   86 (317)
T cd06098           9 AQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYFHSKYKSSKSSTYKKNGTSASIQYGTGS--ISGFFSQDS   86 (317)
T ss_pred             CEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccccCcCCcccCCCcccCCCEEEEEcCCce--EEEEEEeeE
Confidence            4678899997  788999999999888774 4442  244432222111    0      113355554  578888889


Q ss_pred             EEECCeEEE-eEEEEec--------CCCcccccchhh
Q psy8018         213 IAIENDFLT-TSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~-~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      +.+|+..++ ..|.+..        ....|+||||-+
T Consensus        87 v~ig~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~  123 (317)
T cd06098          87 VTVGDLVVKNQVFIEATKEPGLTFLLAKFDGILGLGF  123 (317)
T ss_pred             EEECCEEECCEEEEEEEecCCccccccccceeccccc
Confidence            999986554 3444332        125799999975

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>PRK06083 sulfur carrier protein ThiS; Provisional

Probab=91.65  E-value=0.93  Score=34.54  Aligned_cols=56  Identities=11%  Similarity=0.163  Sum_probs=43.3

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+.+  ++++..||.+|-+.    .++++..-.+-+||..+.-  ..-+++-+++||.|.+..
T Consensus        24 NG~~~--~~~~~~tl~~LL~~----l~~~~~~vAVevNg~iVpr--~~w~~t~L~egD~IEIv~   79 (84)
T PRK06083         24 NDQSI--QVDISSSLAQIIAQ----LSLPELGCVFAINNQVVPR--SEWQSTVLSSGDAISLFQ   79 (84)
T ss_pred             CCeEE--EcCCCCcHHHHHHH----cCCCCceEEEEECCEEeCH--HHcCcccCCCCCEEEEEE
Confidence            56544  55778888877664    4788877788899999963  467778899999999876

>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain

Probab=91.29  E-value=1.7  Score=31.73  Aligned_cols=67  Identities=15%  Similarity=0.134  Sum_probs=50.5

Q ss_pred             EEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-cceEEEE----CCe--eeCCCcCCccccCCC--CCCEEEEEE
Q psy8018           5 VTSLDNECFLLDVSEDLELENFKAFCEVQSGISA-QEIAIEF----QGN--ALVDNKKTLKDYNIQ--DGDLVLLKR   72 (280)
Q Consensus         5 V~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-~~Q~Li~----~Gk--~L~d~~~tL~~~gI~--~gd~l~l~~   72 (280)
                      |..++|...+++|+++.|+.+|-..|....|+.- +-.-|.|    +|.  -|.. +++|.++...  ...++++..
T Consensus         1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~-~k~l~~q~~~~~~~~~l~frv   76 (80)
T PF09379_consen    1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDL-DKKLKKQLKKNNPPFTLYFRV   76 (80)
T ss_dssp             EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-S-SSBGGGSTBTSSSSEEEEEEE
T ss_pred             CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccC-cccHHHHcCCCCCCEEEEEEE
Confidence            5678999999999999999999999999999964 4556777    332  2444 4899999887  444455544

The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....

>PF05618 Zn_protease: Putative ATP-dependant zinc protease; InterPro: IPR008503 This family consists of several hypothetical proteins from different archaeal and bacterial species

Probab=91.22  E-value=0.28  Score=40.88  Aligned_cols=46  Identities=17%  Similarity=0.338  Sum_probs=31.5

Q ss_pred             EEEEEECCeEEEeEEEEecCC--CcccccchhhhhcceEEEEecccEE
Q psy8018         210 MVQIAIENDFLTTSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDFL  255 (280)
Q Consensus       210 ~~~i~IG~~~~~~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L  255 (280)
                      ...+.+|+..++..|+..+-.  .+++|||..-+.+.++.+|..+..+
T Consensus        87 ~~~~~lg~~~~~~e~tL~dR~~m~yp~LlGrR~~l~~~~lVD~s~~~~  134 (138)
T PF05618_consen   87 ETTLCLGGKTWKIEFTLTDRSNMKYPMLLGRRNFLRGRFLVDVSRSFL  134 (138)
T ss_dssp             EEEEEETTEEEEEEEEEE-S--SS-SEEE-HHHHHHTTEEEETT---T
T ss_pred             EEEEEECCEEEEEEEEEcCCCcCcCCEEEEehHHhcCCEEECCChhhc
Confidence            348999999999999988733  5789999666667788888876543

; PDB: 2PMA_B.

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=91.22  E-value=0.7  Score=43.14  Aligned_cols=90  Identities=14%  Similarity=0.072  Sum_probs=51.3

Q ss_pred             EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCc-eeeEEeEEEEE--EEEECCeEEEeEEEEecCCCccccc
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVG-VQRIIGRIHMV--QIAIENDFLTTSFSVLEDQPMDMLL  236 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG-~~~~~g~i~~~--~i~IG~~~~~~~~~Vl~~~~~d~IL  236 (280)
                      ...|+||||.+.+.++.+..+++-=.  + ..   +....+ +.+..  +...  -+...+.  .|-+.... ..--.||
T Consensus       231 ~~~aivDSGTs~~~lp~~~~~~l~~~--~-P~---i~~~f~~g~~~~--i~p~~y~~~~~~~--~c~~~~~~-~~~~~IL  299 (326)
T cd06096         231 GLGMLVDSGSTLSHFPEDLYNKINNF--F-PT---ITIIFENNLKID--WKPSSYLYKKESF--WCKGGEKS-VSNKPIL  299 (326)
T ss_pred             CCCEEEeCCCCcccCCHHHHHHHHhh--c-Cc---EEEEEcCCcEEE--ECHHHhccccCCc--eEEEEEec-CCCceEE
Confidence            34589999999999999998876311  1 01   111111 11100  0000  0111111  12222222 2234799


Q ss_pred             chhhhhcceEEEEecccEEEeeee
Q psy8018         237 GLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       237 G~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      |-.|||.+-.+.|+.+++|-|...
T Consensus       300 G~~flr~~y~vFD~~~~riGfa~~  323 (326)
T cd06096         300 GASFFKNKQIIFDLDNNRIGFVES  323 (326)
T ss_pred             ChHHhcCcEEEEECcCCEEeeEcC
Confidence            999999999999999999988654

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease

Probab=91.04  E-value=0.95  Score=41.95  Aligned_cols=88  Identities=18%  Similarity=0.341  Sum_probs=54.1

Q ss_pred             EEEEEEc--CEEEEEEEcCCCcceecC-HHHHH-HcCCccccccc----e------eeeeecCceeeEEeEEEEEEEEEC
Q psy8018         151 YINCRVN--GHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQIAIE  216 (280)
Q Consensus       151 ~i~~~In--G~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~i~IG  216 (280)
                      |++++|.  ++++++++|||+..+-+. ..|.. .|.-....+..    +      -.+.+|-|.  ..|.+....+.||
T Consensus         2 ~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g~--~~G~~~~D~v~ig   79 (316)
T cd05486           2 FGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTKHNRFQPSESSTYVSNGEAFSIQYGTGS--LTGIIGIDQVTVE   79 (316)
T ss_pred             eEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCccceECCCCCcccccCCcEEEEEeCCcE--EEEEeeecEEEEC
Confidence            5778886  678999999999988774 44431 34322111110    0      113355553  5788888899999


Q ss_pred             CeEEE-eEEEEe--------cCCCcccccchhh
Q psy8018         217 NDFLT-TSFSVL--------EDQPMDMLLGLDM  240 (280)
Q Consensus       217 ~~~~~-~~~~Vl--------~~~~~d~ILG~D~  240 (280)
                      +..++ ..|.+.        .+...|+||||-+
T Consensus        80 ~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~  112 (316)
T cd05486          80 GITVQNQQFAESVSEPGSTFQDSEFDGILGLAY  112 (316)
T ss_pred             CEEEcCEEEEEeeccCcccccccccceEeccCc
Confidence            86543 344432        1236799999964

Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt

>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals

Probab=91.01  E-value=1.6  Score=40.52  Aligned_cols=91  Identities=18%  Similarity=0.321  Sum_probs=56.4

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCH-HHHH-HcCCcccccc----ce------eeeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA-ACAA-RVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~-~~A~-rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|.  .+++.++||||+..+.+.. .|.. .|.-....+.    .+      ..+..|-|+  ..|.+....+
T Consensus         9 ~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c~~~~~f~~~~Sst~~~~~~~~~~~yg~gs--~~G~~~~D~v   86 (317)
T cd05478           9 MEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQACSNHNRFNPRQSSTYQSTGQPLSIQYGTGS--MTGILGYDTV   86 (317)
T ss_pred             CEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccccccCcCCCCCCcceeeCCcEEEEEECCce--EEEEEeeeEE
Confidence            5678899996  6789999999999998853 3321 2321111111    01      113345554  5788888899


Q ss_pred             EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+|+..++ ..|.+...        ...|+|||+.+
T Consensus        87 ~ig~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~  122 (317)
T cd05478          87 QVGGISDTNQIFGLSETEPGSFFYYAPFDGILGLAY  122 (317)
T ss_pred             EECCEEECCEEEEEEEecCccccccccccceeeecc
Confidence            99986554 34444331        14789999874

Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=90.99  E-value=1.9  Score=40.38  Aligned_cols=26  Identities=12%  Similarity=0.135  Sum_probs=23.6

Q ss_pred             ccccchhhhhcceEEEEecccEEEee
Q psy8018         233 DMLLGLDMLKRHQVQIAIENDFLTTS  258 (280)
Q Consensus       233 d~ILG~D~L~~~~~~ID~~~~~L~i~  258 (280)
                      ..|||..||+.+-.+.|++++++-|.
T Consensus       303 ~~IlG~~fl~~~y~vFD~~~~~ig~a  328 (329)
T cd05485         303 LWILGDVFIGKYYTEFDLGNNRVGFA  328 (329)
T ss_pred             eEEEchHHhccceEEEeCCCCEEeec
Confidence            47999999999999999999998764

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=90.97  E-value=1.4  Score=40.89  Aligned_cols=91  Identities=16%  Similarity=0.292  Sum_probs=57.4

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCccccccc----e------eeeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  ++++.+++|||++.+.+. ..|. ..|......+..    +      ..+..|-|+  ..|.+....+
T Consensus         9 ~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~~~~y~~~~Sst~~~~~~~~~~~y~~g~--~~G~~~~D~v   86 (320)
T cd05488           9 AQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFLHSKYDSSASSTYKANGTEFKIQYGSGS--LEGFVSQDTL   86 (320)
T ss_pred             CEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCCcceECCCCCcceeeCCCEEEEEECCce--EEEEEEEeEE
Confidence            4578999997  589999999999988884 3342 134332221110    0      113345453  5788888899


Q ss_pred             EECCeEEE-eEEEEec--------CCCcccccchhh
Q psy8018         214 AIENDFLT-TSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~-~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      .+|+..++ ..|....        ....|+||||.+
T Consensus        87 ~ig~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~  122 (320)
T cd05488          87 SIGDLTIKKQDFAEATSEPGLAFAFGKFDGILGLAY  122 (320)
T ss_pred             EECCEEECCEEEEEEecCCCcceeeeeeceEEecCC
Confidence            99987654 3343332        124689999985

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases

Probab=90.86  E-value=1.2  Score=41.45  Aligned_cols=91  Identities=14%  Similarity=0.259  Sum_probs=57.3

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH---HHcCCccccccc----e------eeeeecCceeeEEeEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA---ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMV  211 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A---~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~  211 (280)
                      ...++++.|.  ++++.+++|||++.+-+. ..|.   ..|+.....+..    +      ..+.+|-|+  ..|.+...
T Consensus         5 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G~--~~G~~~~D   82 (325)
T cd05490           5 AQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIACWLHHKYNSSKSSTYVKNGTEFAIQYGSGS--LSGYLSQD   82 (325)
T ss_pred             CEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccccCcCcCCcccCcceeeCCcEEEEEECCcE--EEEEEeee
Confidence            3567899996  588999999999988773 4443   245432222111    1      113355553  57999989


Q ss_pred             EEEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         212 QIAIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       212 ~i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+.+|+..++ ..|.+...        ...|+||||-+
T Consensus        83 ~v~~g~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~  120 (325)
T cd05490          83 TVSIGGLQVEGQLFGEAVKQPGITFIAAKFDGILGMAY  120 (325)
T ss_pred             EEEECCEEEcCEEEEEEeeccCCcccceeeeEEEecCC
Confidence            9999987654 34443321        24689999864

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank

>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A

Probab=90.85  E-value=1.6  Score=33.65  Aligned_cols=63  Identities=16%  Similarity=0.150  Sum_probs=46.1

Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE----CCee-eCCCcCCccccCCCCCCEEEEEEe
Q psy8018          10 NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF----QGNA-LVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus        10 g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~----~Gk~-L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      ....+...+..+||..++..+...+.| .++-||--    ++.. |.+.+.||+++||.+|-+|.+-.+
T Consensus        13 ~~~~t~~FSk~DTI~~v~~~~rklf~i-~~E~RLW~~~~~~~~e~L~~~~~Tv~da~L~~gQ~vliE~r   80 (88)
T PF14836_consen   13 QSVLTKQFSKTDTIGFVEKEMRKLFNI-QEETRLWNKYSENSYELLNNPEITVEDAGLYDGQVVLIEER   80 (88)
T ss_dssp             CEEEEEEE-TTSBHHHHHHHHHHHCT--TS-EEEEEECTTTCEEEE--TTSBTTTTT--TTEEEEEEE-
T ss_pred             ccHhHhhccccChHHHHHHHHHHHhCC-CccceehhccCCcchhhhCCCCccHHHccCcCCCEEEEEee
Confidence            457888999999999999999999999 66678853    3444 666668999999999999999876

>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins

Probab=90.82  E-value=1.3  Score=41.25  Aligned_cols=95  Identities=12%  Similarity=0.109  Sum_probs=56.3

Q ss_pred             EEEEcCEE-------EEEEEcCCCcceecCHHHHHHcCCccccccce----eeeeecCceeeEEeEEEEEEEEEC--CeE
Q psy8018         153 NCRVNGHP-------VKAFIDSGAQTTIMSAACAARVNITRLIDTRW----AGIAKGVGVQRIIGRIHMVQIAIE--NDF  219 (280)
Q Consensus       153 ~~~InG~~-------v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~----~g~a~gvG~~~~~g~i~~~~i~IG--~~~  219 (280)
                      .++|||..       ..|+||||.+.+.++.+.++++.  ..+++.-    .-+.-..|+         ..+.|.  +..
T Consensus       196 ~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~~~~~i~--~~~~C~~~~~~P~i~f~f~g---------~~~~l~~~~yi  264 (317)
T cd06098         196 DVLIGGKSTGFCAGGCAAIADSGTSLLAGPTTIVTQIN--SAVDCNSLSSMPNVSFTIGG---------KTFELTPEQYI  264 (317)
T ss_pred             eEEECCEEeeecCCCcEEEEecCCcceeCCHHHHHhhh--ccCCccccccCCcEEEEECC---------EEEEEChHHeE
Confidence            35778875       35899999999999999988764  2223221    001111111         112221  111


Q ss_pred             --------EEeEEEEe--c---CCCcccccchhhhhcceEEEEecccEEEee
Q psy8018         220 --------LTTSFSVL--E---DQPMDMLLGLDMLKRHQVQIAIENDFLTTS  258 (280)
Q Consensus       220 --------~~~~~~Vl--~---~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~  258 (280)
                              -.|-+.+.  +   ..+...|||-.|||.+-.+.|+.+++|-|.
T Consensus       265 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA  316 (317)
T cd06098         265 LKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFA  316 (317)
T ss_pred             EeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeec
Confidence                    12432222  1   112347999999999999999999998764

Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro

>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077

Probab=90.65  E-value=0.98  Score=41.13  Aligned_cols=99  Identities=13%  Similarity=0.136  Sum_probs=58.8

Q ss_pred             EEEcCE------EEEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE--
Q psy8018         154 CRVNGH------PVKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT--  221 (280)
Q Consensus       154 ~~InG~------~v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~--  221 (280)
                      +.+++.      ...|++|||+....++.+..+++    +.....  .  .........   .......+.+|+..++  
T Consensus       187 i~i~~~~~~~~~~~~~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~--~--~~~~~c~~~---~~~p~l~f~~~~~~~~i~  259 (317)
T PF00026_consen  187 ISIGGESVFSSSGQQAILDTGTSYIYLPRSIFDAIIKALGGSYSD--G--VYSVPCNST---DSLPDLTFTFGGVTFTIP  259 (317)
T ss_dssp             EEETTEEEEEEEEEEEEEETTBSSEEEEHHHHHHHHHHHTTEEEC--S--EEEEETTGG---GGSEEEEEEETTEEEEEE
T ss_pred             ccccccccccccceeeecccccccccccchhhHHHHhhhcccccc--e--eEEEecccc---cccceEEEeeCCEEEEec
Confidence            455555      36799999999999999877765    221110  0  000000000   0012223444443221  


Q ss_pred             ---------------eEEEEec----CCCcccccchhhhhcceEEEEecccEEEeee
Q psy8018         222 ---------------TSFSVLE----DQPMDMLLGLDMLKRHQVQIAIENDFLTTSF  259 (280)
Q Consensus       222 ---------------~~~~Vl~----~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~  259 (280)
                                     |-+.+..    ......+||..||+++-.+.|+.++++-|..
T Consensus       260 ~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~  316 (317)
T PF00026_consen  260 PSDYIFKIEDGNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQ  316 (317)
T ss_dssp             HHHHEEEESSTTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEE
T ss_pred             chHhcccccccccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEec
Confidence                           4333333    3356699999999999999999999998763

; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....

>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases

Probab=90.31  E-value=1.5  Score=41.08  Aligned_cols=91  Identities=15%  Similarity=0.281  Sum_probs=57.8

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH---HHcCCcccccc----ce------eeeeecCceeeEEeEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA---ARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMV  211 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A---~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~  211 (280)
                      ...++++.|.  ++++++++|||+..+-+. ..|.   ..|+.....+.    .+      -.+.+|-|+  ..|.+...
T Consensus        10 ~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c~~~~~y~~~~Sst~~~~~~~~~i~Y~~g~--~~G~~~~D   87 (329)
T cd05485          10 AQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIACLLHNKYDSTKSSTYKKNGTEFAIQYGSGS--LSGFLSTD   87 (329)
T ss_pred             CeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccccCCCeECCcCCCCeEECCeEEEEEECCce--EEEEEecC
Confidence            5678999998  588999999999988775 3332   13543222211    11      012345554  57888888


Q ss_pred             EEEECCeEEE-eEEEEec--------CCCcccccchhh
Q psy8018         212 QIAIENDFLT-TSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       212 ~i~IG~~~~~-~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      .+.+|+..++ ..|.+..        ....|+||||-+
T Consensus        88 ~v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~  125 (329)
T cd05485          88 TVSVGGVSVKGQTFAEAINEPGLTFVAAKFDGILGMGY  125 (329)
T ss_pred             cEEECCEEECCEEEEEEEecCCccccccccceEEEcCC
Confidence            9999987654 3444332        124689999875

Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an

>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function

Probab=90.22  E-value=1.3  Score=32.15  Aligned_cols=65  Identities=17%  Similarity=0.258  Sum_probs=53.0

Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHHh---CCCCcceEEE-ECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           8 LDNECFLLDVSEDLELENFKAFCEVQS---GISAQEIAIE-FQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         8 ~~g~~~~leV~~~~tV~~LK~~Ie~e~---gip~~~Q~Li-~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .+|+...+|..+...+--+.+.--+++   |-|+++..|- -+|..|.- ++.+++||+..|-+++|..+
T Consensus         3 VNGqPv~VEANvnaPLh~v~akALe~sgNvgQP~ENWElkDe~G~vlD~-~kKveD~GftngvkLFLsLK   71 (76)
T PF10790_consen    3 VNGQPVQVEANVNAPLHPVRAKALEQSGNVGQPPENWELKDESGQVLDV-NKKVEDFGFTNGVKLFLSLK   71 (76)
T ss_pred             eCCCceeeecCCCCcchHHHHHHHhhccccCCCcccceeeccCCcEeec-cchhhhccccccceEEEEee
Confidence            478899999999888877777655554   4689988886 47888864 48999999999999999886

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=89.56  E-value=1.5  Score=31.22  Aligned_cols=56  Identities=20%  Similarity=0.327  Sum_probs=42.2

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+.  +++++..|+.+|.+.+    +++++.-.+..||+.+..  ..-++.-+++||.|.+..
T Consensus         5 Ng~~--~~~~~~~tv~~ll~~l----~~~~~~i~V~vNg~~v~~--~~~~~~~L~~gD~V~ii~   60 (65)
T cd00565           5 NGEP--REVEEGATLAELLEEL----GLDPRGVAVALNGEIVPR--SEWASTPLQDGDRIEIVT   60 (65)
T ss_pred             CCeE--EEcCCCCCHHHHHHHc----CCCCCcEEEEECCEEcCH--HHcCceecCCCCEEEEEE
Confidence            4544  5667788999988775    577788888899999863  234455699999999876

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=89.22  E-value=1.1  Score=40.95  Aligned_cols=79  Identities=16%  Similarity=0.320  Sum_probs=53.2

Q ss_pred             EEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCe-EEE-eEEE
Q psy8018         150 LYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIEND-FLT-TSFS  225 (280)
Q Consensus       150 l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~-~~~-~~~~  225 (280)
                      .++++.|+  .+++.+++|||++.+-+.  | ..|       ..+ .+.+|-| ..+.|.+....+.+|+. .++ ..|.
T Consensus         2 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~--c-~~c-------~~~-~i~Yg~G-s~~~G~~~~D~v~ig~~~~~~~~~Fg   69 (299)
T cd05472           2 YVVTVGLGTPARDQTVIVDTGSDLTWVQ--C-QPC-------CLY-QVSYGDG-SYTTGDLATDTLTLGSSDVVPGFAFG   69 (299)
T ss_pred             eEEEEecCCCCcceEEEecCCCCccccc--C-CCC-------Cee-eeEeCCC-ceEEEEEEEEEEEeCCCCccCCEEEE
Confidence            46788887  678999999999888773  1 123       222 2345544 34568888889999976 443 4565


Q ss_pred             EecCC-----Ccccccchhh
Q psy8018         226 VLEDQ-----PMDMLLGLDM  240 (280)
Q Consensus       226 Vl~~~-----~~d~ILG~D~  240 (280)
                      +....     ..|+||||-+
T Consensus        70 ~~~~~~~~~~~~~GilGLg~   89 (299)
T cd05472          70 CGHDNEGLFGGAAGLLGLGR   89 (299)
T ss_pred             CCccCCCccCCCCEEEECCC
Confidence            55422     5789999964

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>PTZ00165 aspartyl protease; Provisional

Probab=89.09  E-value=1.9  Score=43.13  Aligned_cols=99  Identities=18%  Similarity=0.247  Sum_probs=60.3

Q ss_pred             CCCcce--eeeEEEEEEEEcC--EEEEEEEcCCCcceec-CHHHHH-HcCCccccccc----e-----------eeeeec
Q psy8018         140 NPETFG--SVIMLYINCRVNG--HPVKAFIDSGAQTTIM-SAACAA-RVNITRLIDTR----W-----------AGIAKG  198 (280)
Q Consensus       140 ~Pe~~~--~~~~l~i~~~InG--~~v~alVDTGAq~tii-s~~~A~-rlgL~~~~d~r----~-----------~g~a~g  198 (280)
                      .||.+.  .....+.++.|+.  +++++++|||++.+-+ +..|.. .|......+..    +           .-+.+|
T Consensus       109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~~~~~yd~s~SSTy~~~~~~~~~~~~~i~YG  188 (482)
T PTZ00165        109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCAPHRKFDPKKSSTYTKLKLGDESAETYIQYG  188 (482)
T ss_pred             cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccccccCCCCccccCCcEecCCCCccceEEEEeC
Confidence            444443  3457789999976  8899999999998877 444532 23222211110    0           012355


Q ss_pred             CceeeEEeEEEEEEEEECCeEEE-eEEEEec--------CCCcccccchhh
Q psy8018         199 VGVQRIIGRIHMVQIAIENDFLT-TSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       199 vG~~~~~g~i~~~~i~IG~~~~~-~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      -|+  ..|.+....+.+|+..++ ..|.+..        ....|+||||-|
T Consensus       189 sGs--~~G~l~~DtV~ig~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~  237 (482)
T PTZ00165        189 TGE--CVLALGKDTVKIGGLKVKHQSIGLAIEESLHPFADLPFDGLVGLGF  237 (482)
T ss_pred             CCc--EEEEEEEEEEEECCEEEccEEEEEEEeccccccccccccceeecCC
Confidence            553  457777789999987654 2343332        225799999987

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=89.01  E-value=3.6  Score=29.00  Aligned_cols=60  Identities=15%  Similarity=0.279  Sum_probs=40.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|   +|+.  +++++..|+.+|.+.+    +++ ..-.+.+||+.+..  ..-.+.-+++||.|.+..
T Consensus         1 m~i~v---Ng~~--~~~~~~~tl~~ll~~l----~~~-~~~~v~vN~~~v~~--~~~~~~~L~~gD~vei~~   60 (65)
T PRK06944          1 MDIQL---NQQT--LSLPDGATVADALAAY----GAR-PPFAVAVNGDFVAR--TQHAARALAAGDRLDLVQ   60 (65)
T ss_pred             CEEEE---CCEE--EECCCCCcHHHHHHhh----CCC-CCeEEEECCEEcCc--hhcccccCCCCCEEEEEe
Confidence            66666   5554  4667788999888765    443 23566789998853  123344599999999876

>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases

Probab=88.82  E-value=2.7  Score=31.05  Aligned_cols=65  Identities=12%  Similarity=0.110  Sum_probs=49.3

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC----eeeCCCcCCccccCCCCCCEEEEE
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG----NALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G----k~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      ++|..++|+...+.|.|.+|+.++-+.+-+.-|+.++.-.|++.|    +++.-    -++.+.-.|+-|.+.
T Consensus         2 ~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~~~~~~~~----~~d~~~L~~~El~Ve   70 (72)
T cd01760           2 CRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLDEKKPLDL----DTDSSSLAGEELEVE   70 (72)
T ss_pred             EEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCCCcCCcCc----hhhhhhhcCCEEEEE
Confidence            467789999999999999999999999999999999988887654    33321    223345556655553

The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.

>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin

Probab=88.57  E-value=1  Score=40.89  Aligned_cols=78  Identities=17%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEecCC--Ccccccc
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQ--PMDMLLG  237 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~~~--~~d~ILG  237 (280)
                      ...++||||++.+.++.+.++++-=      .+.|...    ..          .-|...++|+-. ++..  .+..|||
T Consensus       198 ~~~~iiDSGTs~~~lP~~~~~~l~~------~l~g~~~----~~----------~~~~~~~~C~~~-~P~i~f~~~~ilG  256 (278)
T cd06097         198 GFSAIADTGTTLILLPDAIVEAYYS------QVPGAYY----DS----------EYGGWVFPCDTT-LPDLSFAVFSILG  256 (278)
T ss_pred             CceEEeecCCchhcCCHHHHHHHHH------hCcCCcc----cC----------CCCEEEEECCCC-CCCEEEEEEEEEc
Confidence            4569999999999999888776620      0101000    00          001122333211 1111  0157999


Q ss_pred             hhhhhcceEEEEecccEEEee
Q psy8018         238 LDMLKRHQVQIAIENDFLTTS  258 (280)
Q Consensus       238 ~D~L~~~~~~ID~~~~~L~i~  258 (280)
                      -.|||.+=.+.|+.+++|-+.
T Consensus       257 d~fl~~~y~vfD~~~~~ig~A  277 (278)
T cd06097         257 DVFLKAQYVVFDVGGPKLGFA  277 (278)
T ss_pred             chhhCceeEEEcCCCceeeec
Confidence            999999999999999988664

The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=88.42  E-value=3.6  Score=30.12  Aligned_cols=63  Identities=17%  Similarity=0.371  Sum_probs=47.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |.+++.. +|+  +++++...|+.+|-+.    .|++++.-...+||.++..  .--++.-+++||.|.++.
T Consensus         1 ~~m~i~~-ng~--~~e~~~~~tv~dLL~~----l~~~~~~vav~vNg~iVpr--~~~~~~~l~~gD~ievv~   63 (68)
T COG2104           1 MPMTIQL-NGK--EVEIAEGTTVADLLAQ----LGLNPEGVAVAVNGEIVPR--SQWADTILKEGDRIEVVR   63 (68)
T ss_pred             CcEEEEE-CCE--EEEcCCCCcHHHHHHH----hCCCCceEEEEECCEEccc--hhhhhccccCCCEEEEEE
Confidence            4455544 343  5677787999998766    6788888889999999973  345667799999998875

>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily

Probab=88.41  E-value=4.1  Score=37.83  Aligned_cols=101  Identities=13%  Similarity=0.119  Sum_probs=56.6

Q ss_pred             EEEcCEE-----EEEEEcCCCcceecCHHHHHHcCCccccccce--eeeeecCceeeEEeEEEEEEEEECCeEEE-----
Q psy8018         154 CRVNGHP-----VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGIAKGVGVQRIIGRIHMVQIAIENDFLT-----  221 (280)
Q Consensus       154 ~~InG~~-----v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-----  221 (280)
                      ++|+|..     ..++||||++.+.++.++++.+.  ..+....  .+. .-+-... ........+.+|+..+.     
T Consensus       194 i~vg~~~~~~~~~~~ivDSGtt~~~lp~~~~~~l~--~~~~~~~~~~~~-~~~~C~~-~~~~P~i~f~f~g~~~~i~~~~  269 (320)
T cd05488         194 IGLGDEELELENTGAAIDTGTSLIALPSDLAEMLN--AEIGAKKSWNGQ-YTVDCSK-VDSLPDLTFNFDGYNFTLGPFD  269 (320)
T ss_pred             EEECCEEeccCCCeEEEcCCcccccCCHHHHHHHH--HHhCCccccCCc-EEeeccc-cccCCCEEEEECCEEEEECHHH
Confidence            4556543     35899999999999999887752  1111000  000 0000000 00112234555554332     


Q ss_pred             --------eEEEEecC-----CCcccccchhhhhcceEEEEecccEEEee
Q psy8018         222 --------TSFSVLED-----QPMDMLLGLDMLKRHQVQIAIENDFLTTS  258 (280)
Q Consensus       222 --------~~~~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~  258 (280)
                              |-+.+...     .+...|||..||+.+-.+.|+.++++-|.
T Consensus       270 y~~~~~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a  319 (320)
T cd05488         270 YTLEVSGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLA  319 (320)
T ss_pred             heecCCCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeec
Confidence                    33333221     12258999999999999999999988764

Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=88.34  E-value=2  Score=30.50  Aligned_cols=56  Identities=18%  Similarity=0.358  Sum_probs=41.8

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+.+  +++...|+.+|.+.    .+++++.-.+..||+.+..  ..-+++-+++||.|.+..
T Consensus         4 Ng~~~--~~~~~~tv~~ll~~----l~~~~~~v~v~vN~~iv~~--~~~~~~~L~~gD~veii~   59 (64)
T TIGR01683         4 NGEPV--EVEDGLTLAALLES----LGLDPRRVAVAVNGEIVPR--SEWDDTILKEGDRIEIVT   59 (64)
T ss_pred             CCeEE--EcCCCCcHHHHHHH----cCCCCCeEEEEECCEEcCH--HHcCceecCCCCEEEEEE
Confidence            55544  55778899998876    4677777778899999853  234556799999999876

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease

Probab=88.31  E-value=2.1  Score=40.57  Aligned_cols=87  Identities=15%  Similarity=0.262  Sum_probs=53.0

Q ss_pred             EEEEEEEEc--CEEEEEEEcCCCcceecCHH-HHHHcCCccccccc----e------eeeeecCceeeEEeEEEEEEEEE
Q psy8018         149 MLYINCRVN--GHPVKAFIDSGAQTTIMSAA-CAARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQIAI  215 (280)
Q Consensus       149 ~l~i~~~In--G~~v~alVDTGAq~tiis~~-~A~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~i~I  215 (280)
                      -.++++.|.  ++++.+++|||++.+-+... |.   ......+..    +      -.+.+|-|.  ..|.+....+.|
T Consensus         3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~---~~~~~f~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~i   77 (364)
T cd05473           3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP---FIHTYFHRELSSTYRDLGKGVTVPYTQGS--WEGELGTDLVSI   77 (364)
T ss_pred             ceEEEEEecCCCceEEEEEecCCcceEEEcCCCc---cccccCCchhCcCcccCCceEEEEECcce--EEEEEEEEEEEE
Confidence            357889996  68999999999988877433 32   111111110    0      123456553  469998889999


Q ss_pred             CC---eEEEeEEEEec--------CCCcccccchhh
Q psy8018         216 EN---DFLTTSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       216 G~---~~~~~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      |+   ..+...+....        +...|+||||-+
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~  113 (364)
T cd05473          78 PKGPNVTFRANIAAITESENFFLNGSNWEGILGLAY  113 (364)
T ss_pred             CCCCccceEEeeEEEeccccceecccccceeeeecc
Confidence            85   23333333221        124699999975

Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two

>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase

Probab=88.03  E-value=5.2  Score=36.57  Aligned_cols=28  Identities=7%  Similarity=-0.003  Sum_probs=25.0

Q ss_pred             ccccchhhhhcceEEEEecccEEEeeee
Q psy8018         233 DMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       233 d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      -.|||-.|||.+-.+.|+.+++|-+...
T Consensus       270 ~~ilG~~fl~~~~vvfD~~~~~igfa~~  297 (299)
T cd05472         270 LSIIGNVQQQTFRVVYDVAGGRIGFAPG  297 (299)
T ss_pred             CEEEchHHccceEEEEECCCCEEeEecC
Confidence            3799999999999999999999988654

Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=87.90  E-value=2.6  Score=30.69  Aligned_cols=55  Identities=18%  Similarity=0.143  Sum_probs=41.4

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHhCC----CCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018          12 CFLLDVSEDLELENFKAFCEVQSGI----SAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus        12 ~~~leV~~~~tV~~LK~~Ie~e~gi----p~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      ...+++++..||.+|.+.+....+-    ....-.+..||+....      ++-+++||.|.+..
T Consensus        17 ~~~~~~~~~~tv~~ll~~l~~~~~~~~~~~~~~~~v~vNg~~v~~------~~~l~~gD~v~i~p   75 (80)
T cd00754          17 EEELELPEGATVGELLDALEARYPGLLEELLARVRIAVNGEYVRL------DTPLKDGDEVAIIP   75 (80)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHCchHHHhhhhcEEEEECCeEcCC------CcccCCCCEEEEeC
Confidence            4677888899999999999887532    2334566779998863      24599999999875

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function

Probab=87.83  E-value=1.5  Score=34.46  Aligned_cols=30  Identities=23%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             EEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018          42 AIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus        42 ~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .|-|.||.|..+ ++|++| |.-++.--++.+
T Consensus         3 ~LW~aGK~l~~~-k~l~dy-~GkNEKtKiivK   32 (98)
T PF11069_consen    3 QLWWAGKELQRG-KKLSDY-IGKNEKTKIIVK   32 (98)
T ss_pred             eEEeccccccCC-CcHHHh-cCCCcceeEEEE
Confidence            578999999765 899999 555554444443

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=87.71  E-value=1.6  Score=39.67  Aligned_cols=28  Identities=14%  Similarity=-0.023  Sum_probs=24.6

Q ss_pred             ccccchhhhhcceEEEEecccEEEeeee
Q psy8018         233 DMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       233 d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      ..|||-.||+.+-.+.|+.+++|-+...
T Consensus       244 ~~ilG~~~l~~~~~vfD~~~~riGfa~~  271 (273)
T cd05475         244 TNIIGDISMQGLMVIYDNEKQQIGWVRS  271 (273)
T ss_pred             eEEECceEEEeeEEEEECcCCEeCcccC
Confidence            4799999999999999999998877554

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=87.15  E-value=2.9  Score=39.71  Aligned_cols=67  Identities=18%  Similarity=0.275  Sum_probs=50.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVARTS   79 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~s   79 (280)
                      |+|+|   +|+.  +++++..||.+|-..    .+++++.-.+.+||+.+..  ..-.++-+++||.|.+.. .+.|.|
T Consensus         1 M~I~V---NGk~--~el~e~~TL~dLL~~----L~i~~~~VAVeVNgeIVpr--~~w~~t~LkeGD~IEII~-~VgGGs   67 (326)
T PRK11840          1 MRIRL---NGEP--RQVPAGLTIAALLAE----LGLAPKKVAVERNLEIVPR--SEYGQVALEEGDELEIVH-FVGGGS   67 (326)
T ss_pred             CEEEE---CCEE--EecCCCCcHHHHHHH----cCCCCCeEEEEECCEECCH--HHcCccccCCCCEEEEEE-EecCCC
Confidence            66666   5654  566778888887654    5889988899999999963  345667799999999987 356654

>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis

Probab=87.02  E-value=2.4  Score=32.09  Aligned_cols=36  Identities=11%  Similarity=0.254  Sum_probs=34.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC
Q psy8018          12 CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG   47 (280)
Q Consensus        12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G   47 (280)
                      ++.+.|+++.+..+|.++|.++.++|++.-+|.|.-
T Consensus        12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkd   47 (80)
T cd06406          12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKS   47 (80)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEecc
Confidence            888999999999999999999999999999999954

PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

Probab=86.14  E-value=1.9  Score=38.33  Aligned_cols=81  Identities=11%  Similarity=0.101  Sum_probs=48.2

Q ss_pred             EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEecCCCcccccchh
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLD  239 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~~~~~d~ILG~D  239 (280)
                      ...+++|||...+.++.+..+.+--.  +....    ..   ........  ...+ ...-++.|..      ..|||..
T Consensus       202 ~~~~iiDsGt~~~~lp~~~~~~l~~~--~~~~~----~~---~~~~~~~~--~~~~-~~~p~i~f~f------~~ilG~~  263 (283)
T cd05471         202 GGGAIVDSGTSLIYLPSSVYDAILKA--LGAAV----SS---SDGGYGVD--CSPC-DTLPDITFTF------LWILGDV  263 (283)
T ss_pred             CcEEEEecCCCCEeCCHHHHHHHHHH--hCCcc----cc---cCCcEEEe--Cccc-CcCCCEEEEE------EEEccHh
Confidence            56799999999999999988876211  11111    00   00000000  0000 0000111211      7999999


Q ss_pred             hhhcceEEEEecccEEEee
Q psy8018         240 MLKRHQVQIAIENDFLTTS  258 (280)
Q Consensus       240 ~L~~~~~~ID~~~~~L~i~  258 (280)
                      ||+.+-.+.|+.+++|-+.
T Consensus       264 fl~~~y~vfD~~~~~igfa  282 (283)
T cd05471         264 FLRNYYTVFDLDNNRIGFA  282 (283)
T ss_pred             hhhheEEEEeCCCCEEeec
Confidence            9999999999999988764

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu

>TIGR02958 sec_mycoba_snm4 secretion protein snm4

Probab=85.81  E-value=3.4  Score=40.95  Aligned_cols=70  Identities=19%  Similarity=0.211  Sum_probs=52.0

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCC------CCcceEEE-ECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGI------SAQEIAIE-FQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gi------p~~~Q~Li-~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|||...+ +...+-++.+..|.+|-.-+-.-.+=      +...-.|. -+|.+|+.+ .||.+.||.|||+++|...
T Consensus         4 RVtV~~~~-~~~DlaLPa~~PvaellP~ll~~~~~~~~~~~~~~~w~L~r~gG~pL~~~-~sL~~~gV~DG~~L~L~p~   80 (452)
T TIGR02958         4 RVTVLAGR-RAVDVALPADVPVAELIPDLVDLLDDRGAAELGAVRWALARAGGSPLDPD-ASLAEAGVRDGELLVLVPA   80 (452)
T ss_pred             EEEEeeCC-eeeeeecCCCCcHHHHHHHHHHHhCcccccCCCCcceEEecCCCCCCCCC-CCHHHcCCCCCCeEEEeeC
Confidence            56777644 45778889999999998877665542      12233443 488899765 9999999999999999874

Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.

>KOG2086|consensus

Probab=85.41  E-value=1.8  Score=41.77  Aligned_cols=66  Identities=15%  Similarity=0.320  Sum_probs=53.5

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHh-CCCCcceEEE--ECCeeeCCCcCCccccCCCCCCE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQS-GISAQEIAIE--FQGNALVDNKKTLKDYNIQDGDL   67 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~-gip~~~Q~Li--~~Gk~L~d~~~tL~~~gI~~gd~   67 (280)
                      .|-|+..+|....+-+.-+.||.+++..|...- +-+...+.|+  |=-|+|.|++.||++.|+.+--+
T Consensus       307 sIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPpk~l~D~sqTle~AgL~Nsvl  375 (380)
T KOG2086|consen  307 SIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPPKPLSDDSQTLEEAGLLNSVL  375 (380)
T ss_pred             eEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCCcccCCcchhHHhccchhhhh
Confidence            367888899998889999999999999998764 4455567776  46788999999999999976543

>PRK01777 hypothetical protein; Validated

Probab=85.01  E-value=7  Score=30.42  Aligned_cols=62  Identities=19%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             CEEEEEc--CC-CcEEEEEeCCCccHHHHHHHHHHHhCCCCc--c-----eEEEECCeeeCCCcCCccccCCCCCCEEEE
Q psy8018           1 MKVTVTS--LD-NECFLLDVSEDLELENFKAFCEVQSGISAQ--E-----IAIEFQGNALVDNKKTLKDYNIQDGDLVLL   70 (280)
Q Consensus         1 M~ItV~~--~~-g~~~~leV~~~~tV~~LK~~Ie~e~gip~~--~-----Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l   70 (280)
                      |+|+|..  ++ .....+++++..||.++-..    .||+..  +     -.+.-+|+...-+      .-+++||.|-+
T Consensus         4 i~v~V~ya~~~~~~~~~l~vp~GtTv~dal~~----sgi~~~~pei~~~~~~vgI~Gk~v~~d------~~L~dGDRVeI   73 (95)
T PRK01777          4 IRVEVVYALPERQYLQRLTLQEGATVEEAIRA----SGLLELRTDIDLAKNKVGIYSRPAKLT------DVLRDGDRVEI   73 (95)
T ss_pred             eEEEEEEECCCceEEEEEEcCCCCcHHHHHHH----cCCCccCcccccccceEEEeCeECCCC------CcCCCCCEEEE
Confidence            5778763  22 33467899999999998666    366554  2     3555678876433      36999999998


Q ss_pred             EE
Q psy8018          71 KR   72 (280)
Q Consensus        71 ~~   72 (280)
                      -+
T Consensus        74 yr   75 (95)
T PRK01777         74 YR   75 (95)
T ss_pred             ec
Confidence            75

>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite

Probab=84.99  E-value=3.3  Score=38.56  Aligned_cols=91  Identities=15%  Similarity=0.202  Sum_probs=55.7

Q ss_pred             EEEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCCcc--cccc----c----------------------eeeeeec
Q psy8018         149 MLYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNITR--LIDT----R----------------------WAGIAKG  198 (280)
Q Consensus       149 ~l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL~~--~~d~----r----------------------~~g~a~g  198 (280)
                      ..++++.|.  ++++.+++|||+..+-+.-.-+..|+...  ..+.    .                      .-.+..|
T Consensus         3 ~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~~~~~~~i~Y~   82 (326)
T cd06096           3 YYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHMEPPYNLNNSITSSILYCDCNKCCYCLSCLNNKCEYSISYS   82 (326)
T ss_pred             eEEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCCCCCcCcccccccccccCCCccccccCcCCCCcCcEEEEEC
Confidence            468899997  68899999999998888544334454321  0000    0                      0112344


Q ss_pred             CceeeEEeEEEEEEEEECCeEEE--------eEEEEec-------CCCcccccchhh
Q psy8018         199 VGVQRIIGRIHMVQIAIENDFLT--------TSFSVLE-------DQPMDMLLGLDM  240 (280)
Q Consensus       199 vG~~~~~g~i~~~~i~IG~~~~~--------~~~~Vl~-------~~~~d~ILG~D~  240 (280)
                      -| ..+.|.+....+.+|+...+        ..|.+..       ....|+||||.+
T Consensus        83 ~g-s~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~  138 (326)
T cd06096          83 EG-SSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSL  138 (326)
T ss_pred             CC-CceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccC
Confidence            44 35678888889999875432        1232221       124789999986

The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l

>smart00455 RBD Raf-like Ras-binding domain

Probab=84.09  E-value=4.2  Score=29.78  Aligned_cols=48  Identities=17%  Similarity=0.229  Sum_probs=42.1

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC--eee
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG--NAL   50 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G--k~L   50 (280)
                      ..|..++|+...+.+.|..|+.++-+.+-++.|+.++.-.++..|  ++|
T Consensus         2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~k~l   51 (70)
T smart00455        2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEKKPL   51 (70)
T ss_pred             eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCCcce
Confidence            356678999999999999999999999999999999999998854  455

>smart00666 PB1 PB1 domain

Probab=83.69  E-value=5.5  Score=29.17  Aligned_cols=38  Identities=21%  Similarity=0.420  Sum_probs=34.2

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ   46 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~   46 (280)
                      +|.++.+.++++.|..+|+.+|...++.+.....|-|.
T Consensus         9 ~~~~~~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~   46 (81)
T smart00666        9 GGETRRLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQ   46 (81)
T ss_pred             CCEEEEEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence            77899999999999999999999999998777777775

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats)

Probab=83.66  E-value=4.2  Score=31.17  Aligned_cols=61  Identities=25%  Similarity=0.269  Sum_probs=43.9

Q ss_pred             cEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018          11 ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus        11 ~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      ..+...++=...+..||.+++...+++-+.-.++.....|..+ ++|-+-|++-.-++-+..
T Consensus         3 ~vI~q~mDI~epl~~Lk~lLe~Rl~~~L~~~~f~LQD~~L~~~-k~L~dQcVqgeGlVQlnv   63 (88)
T PF11620_consen    3 DVIMQHMDIREPLSTLKKLLERRLGISLSDYEFWLQDIQLEPH-KSLVDQCVQGEGLVQLNV   63 (88)
T ss_dssp             EEEEEEEESSSBGGGHHHHSHHHH-S--SS-EEEETTEE--TT-SBTTTSS----SEEEEEE
T ss_pred             ceEEEEEecCCcHHHHHHHHHHhhCCCcCCCeEEeccceecCC-ccHHHhhccccCEEEEEE
Confidence            3456677778899999999999999999999999988888765 899999999988888876

This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.

>KOG4250|consensus

Probab=83.30  E-value=1.8  Score=44.87  Aligned_cols=65  Identities=17%  Similarity=0.169  Sum_probs=47.6

Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeC-CCcCCccccCCCCCCEEEEEE
Q psy8018           7 SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALV-DNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         7 ~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~-d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      ..+...+.+-|+++.|+..+++.|+..+|||...|.|+|.|...- .++.+-.--| -+.++..+..
T Consensus       321 ~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~~h~~~~~Q~~~dg-~~~~l~l~~~  386 (732)
T KOG4250|consen  321 MVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGLSHLEDSAQCIPDG-LDSPLYLVSD  386 (732)
T ss_pred             eccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCccccCcccccCCCC-CCCceEEEec
Confidence            456778899999999999999999999999999999999875532 1223322334 4555555443

>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH

Probab=83.03  E-value=6  Score=35.13  Aligned_cols=90  Identities=14%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             EEEEEEcCE--EEEEEEcCCCcceecCHHHHHHcCCccc--------------cccceeeeeecCceeeEEeEEEEEEEE
Q psy8018         151 YINCRVNGH--PVKAFIDSGAQTTIMSAACAARVNITRL--------------IDTRWAGIAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       151 ~i~~~InG~--~v~alVDTGAq~tiis~~~A~rlgL~~~--------------~d~r~~g~a~gvG~~~~~g~i~~~~i~  214 (280)
                      ++++.|+.-  ++.+++|||+..+-+...-+..|.....              ..........+-|  ...|.+....+.
T Consensus         2 ~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~Y~~g--~~~g~~~~D~v~   79 (283)
T cd05471           2 YGEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKHPRFKYDSSKSSTYKDTGCTFSITYGDG--SVTGGLGTDTVT   79 (283)
T ss_pred             EEEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccCCCCccCccCCceeecCCCEEEEEECCC--eEEEEEEEeEEE
Confidence            567788654  7999999999988885543333322110              0001112334444  345666677999


Q ss_pred             ECCeEEE-eEEEEec-------CCCcccccchhhhh
Q psy8018         215 IENDFLT-TSFSVLE-------DQPMDMLLGLDMLK  242 (280)
Q Consensus       215 IG~~~~~-~~~~Vl~-------~~~~d~ILG~D~L~  242 (280)
                      +|+...+ ..|....       ....|+||||..=.
T Consensus        80 ~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~  115 (283)
T cd05471          80 IGGLTIPNQTFGCATSESGDFSSSGFDGILGLGFPS  115 (283)
T ss_pred             ECCEEEeceEEEEEeccCCcccccccceEeecCCcc
Confidence            9986533 3444443       23688999987643

Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu

>cd01768 RA RA (Ras-associating) ubiquitin domain

Probab=81.54  E-value=18  Score=26.75  Aligned_cols=49  Identities=16%  Similarity=0.188  Sum_probs=38.1

Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHHhCCC--CcceEEE--EC----CeeeCCCcCCcc
Q psy8018          10 NECFLLDVSEDLELENFKAFCEVQSGIS--AQEIAIE--FQ----GNALVDNKKTLK   58 (280)
Q Consensus        10 g~~~~leV~~~~tV~~LK~~Ie~e~gip--~~~Q~Li--~~----Gk~L~d~~~tL~   58 (280)
                      +...++.|++++|..++-..+..+++++  +....|+  +.    .+.|.+++..+.
T Consensus        12 ~~~kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ev~~~~~~er~L~~~e~pl~   68 (87)
T cd01768          12 GTYKTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALVEVLGDGGLERLLLPDECPLQ   68 (87)
T ss_pred             ccEEEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEEEEECCceEEEEeCCCCChHH
Confidence            7778999999999999999999999997  4555554  22    346777666665

The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.

>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure

Probab=81.03  E-value=10  Score=35.20  Aligned_cols=26  Identities=12%  Similarity=0.249  Sum_probs=23.6

Q ss_pred             ccccchhhhhcceEEEEecccEEEee
Q psy8018         233 DMLLGLDMLKRHQVQIAIENDFLTTS  258 (280)
Q Consensus       233 d~ILG~D~L~~~~~~ID~~~~~L~i~  258 (280)
                      ..|||..|||.+-.+.|+.++++-+.
T Consensus       299 ~~ilG~~flr~~y~vfD~~~~~IGfA  324 (326)
T cd05487         299 LWVLGATFIRKFYTEFDRQNNRIGFA  324 (326)
T ss_pred             eEEEehHHhhccEEEEeCCCCEEeee
Confidence            47999999999999999999988775

Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=81.02  E-value=5.1  Score=30.29  Aligned_cols=42  Identities=7%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             EEE-cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-cceEEEE
Q psy8018           4 TVT-SLDNECFLLDVSEDLELENFKAFCEVQSGISA-QEIAIEF   45 (280)
Q Consensus         4 tV~-~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-~~Q~Li~   45 (280)
                      +|| +-+|....+.++|+.+..+|++.|...+++.. ....|-|
T Consensus         2 ~vK~~~~~d~~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY   45 (82)
T cd06407           2 RVKATYGEEKIRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKY   45 (82)
T ss_pred             EEEEEeCCeEEEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEE
Confidence            444 23788999999999999999999999999864 4556655

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=80.64  E-value=6.5  Score=30.14  Aligned_cols=43  Identities=9%  Similarity=0.145  Sum_probs=36.9

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc---ceEEEE
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ---EIAIEF   45 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~---~Q~Li~   45 (280)
                      ..++++.|.++-+.+.|+.++.+|++.|....|+...   .-.|.|
T Consensus         3 FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~Y   48 (86)
T cd06409           3 FKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSY   48 (86)
T ss_pred             EEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEE
Confidence            3567889999999999999999999999999999873   555655

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>PF03539 Spuma_A9PTase: Spumavirus aspartic protease (A9); InterPro: IPR001641 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=80.47  E-value=14  Score=31.27  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             EcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeee--ecCceeeEEeEEEEEEEEECCeEEEeEEEEecCCCcc
Q psy8018         156 VNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIA--KGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMD  233 (280)
Q Consensus       156 InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a--~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~~~~~d  233 (280)
                      |-|...++.-||||+.|+|...+.+        +....|..  .-+-+ .....+.-+.++|.|..+.+...--   ++|
T Consensus         1 ikg~~l~~~wDsga~ITCiP~~fl~--------~E~Pi~~~~i~Tihg-~~~~~vYYl~fKi~grkv~aEVi~s---~~d   68 (163)
T PF03539_consen    1 IKGTKLKGHWDSGAQITCIPESFLE--------EEQPIGKTLIKTIHG-EKEQDVYYLTFKINGRKVEAEVIAS---PYD   68 (163)
T ss_dssp             ETTEEEEEEE-TT-SSEEEEGGGTT--------T---SEEEEEE-SS--EEEEEEEEEEEEESS-EEEEEEEEE---SSS
T ss_pred             CCCceeeEEecCCCeEEEccHHHhC--------ccccccceEEEEecC-ceeccEEEEEEEEcCeEEEEEEecC---ccc
Confidence            5688999999999999999988733        22221211  11111 2234455568899888766543322   344


Q ss_pred             ccc----chhhhhcc
Q psy8018         234 MLL----GLDMLKRH  244 (280)
Q Consensus       234 ~IL----G~D~L~~~  244 (280)
                      -+|    -++|++..
T Consensus        69 y~li~p~diPw~~~~   83 (163)
T PF03539_consen   69 YILISPSDIPWYKKK   83 (163)
T ss_dssp             SEEE-TTT-HHHHS-
T ss_pred             eEEEcccccccccCC
Confidence            322    35688763

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A9 (spumapepsin family, clan AA). Foamy viruses are single-stranded enveloped retroviruses that have been noted to infect monkeys, cats and humans. In the human virus, the aspartic protease is encoded by the retroviral gag gene [], and in monkeys by the pol gene []. At present, the virus has not been proven to cause any particular disease. However, studies have shown Human foamy virus causes neurological disorders in infected mice []. It is not clear whether the Foamy virus/spumavirus proteases share a common evolutionary origin with other aspartic proteases. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 2JYS_A.

>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation

Probab=80.17  E-value=5.9  Score=35.91  Aligned_cols=83  Identities=19%  Similarity=0.262  Sum_probs=49.6

Q ss_pred             EEEEEEEc--CEEEEEEEcCCCcceecCH-HHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECC----eEE-E
Q psy8018         150 LYINCRVN--GHPVKAFIDSGAQTTIMSA-ACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIEN----DFL-T  221 (280)
Q Consensus       150 l~i~~~In--G~~v~alVDTGAq~tiis~-~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~----~~~-~  221 (280)
                      .++++.|+  .+++.+++|||++.+-+.- ..+..|+      ..+ .+.+|-| ..+.|.+-...+.++.    ... .
T Consensus         3 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c~------c~~-~i~Ygd~-~~~~G~~~~D~v~~~~~~~~~~~~~   74 (273)
T cd05475           3 YYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGCQ------CDY-EIEYADG-GSSMGVLVTDIFSLKLTNGSRAKPR   74 (273)
T ss_pred             eEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCCc------Ccc-EeEeCCC-CceEEEEEEEEEEEeecCCCcccCC
Confidence            57888997  7889999999999998842 1112332      222 1334433 2456777777777753    121 1


Q ss_pred             eEEEEe---------cCCCcccccchhh
Q psy8018         222 TSFSVL---------EDQPMDMLLGLDM  240 (280)
Q Consensus       222 ~~~~Vl---------~~~~~d~ILG~D~  240 (280)
                      ..|...         .....|+||||-+
T Consensus        75 ~~Fgc~~~~~~~~~~~~~~~dGIlGLg~  102 (273)
T cd05475          75 IAFGCGYDQQGPLLNPPPPTDGILGLGR  102 (273)
T ss_pred             EEEEeeeccCCcccCCCccCCEEEECCC
Confidence            223322         1225789999964

Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d

>PF14451 Ub-Mut7C: Mut7-C ubiquitin

Probab=80.10  E-value=7.2  Score=29.46  Aligned_cols=53  Identities=19%  Similarity=0.312  Sum_probs=42.1

Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE-CCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018          10 NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF-QGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus        10 g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~-~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +..+.++.++..||.++-+.    .|+|..+-.++. ||+...=      +|-+++||.|.+..
T Consensus        22 ~~~~~~~~~~~~tvkd~IEs----LGVP~tEV~~i~vNG~~v~~------~~~~~~Gd~v~V~P   75 (81)
T PF14451_consen   22 GGPFTHPFDGGATVKDVIES----LGVPHTEVGLILVNGRPVDF------DYRLKDGDRVAVYP   75 (81)
T ss_pred             CCceEEecCCCCcHHHHHHH----cCCChHHeEEEEECCEECCC------cccCCCCCEEEEEe
Confidence            45778899999999887554    799998887764 9998642      37799999999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	280
3s8i_A	148	The Retroviral-Like Protease (Rvp) Domain Of Human		2e-46
2i1a_A	148	A Retroviral Protease-Like Domain In The Eukaryotic		2e-32
1v5o_A	102	Solution Structure Of The Ubiquitin-Like Domain Fro		3e-08

>pdb|3S8I|A Chain A, The Retroviral-Like Protease (Rvp) Domain Of Human Ddi1 Length = 148

Iteration: 1
 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 81/115 (70%), Positives = 93/115 (80%)
Query: 141 PETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVG 200
           P   G V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R NI RL+D RWAG+AKGVG
Sbjct: 16  PRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVG 75
Query: 201 VQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFL 255
            QRIIGR+H+ QI IE DFL  SFS+LEDQPMDMLLGLDML+RHQ  I ++ + L
Sbjct: 76  TQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVL 130

>pdb|2I1A|A Chain A, A Retroviral Protease-Like Domain In The Eukaryotic Protein Ddi1 Length = 148

Iteration: 1
 Score =  135 bits (340), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 63/121 (52%), Positives = 85/121 (70%), Gaps = 1/121 (0%)
Query: 124 IKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVN 183
           +K+  I   +  A+EY PE F  V MLYIN  +N +PVKAF+D+GAQTTIMS   A +  
Sbjct: 1   MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTG 60
Query: 184 ITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKR 243
           ++R+ID R+ G A+GVG  +IIGRIH  Q+ IE  ++  SF+VL D  +D+L+GLDMLKR
Sbjct: 61  LSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSFTVL-DTDIDVLIGLDMLKR 119
Query: 244 H 244
           H
Sbjct: 120 H 120

>pdb|1V5O|A Chain A, Solution Structure Of The Ubiquitin-Like Domain From Mouse Hypothetical 1700011n24rik Protein Length = 102

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 13 FLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLL 70
          F L V+ D EL NF+  CE++SG+ A+E  I +    L D+  +L  Y ++DGD+V+L
Sbjct: 24 FSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVL 81

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	280
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	4e-47
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	5e-47
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	1e-21
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	5e-09
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	2e-08
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	2e-08
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	6e-08
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	7e-08
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	7e-08
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	7e-08
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	9e-08
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	9e-08
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	9e-08
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	1e-07
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	1e-07
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	2e-07
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	2e-07
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	2e-07
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	2e-07
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	3e-07
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	3e-07
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	3e-07
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	3e-07
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	4e-07
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	4e-07
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	4e-07
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	5e-07
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	5e-07
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	6e-07
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	9e-07
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	9e-07
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	1e-06
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	1e-06
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	1e-06
3u5c_F	225	RP14, S2, YS8, 40S ribosomal protein S5; translati	1e-06
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	4e-06
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	6e-06
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	4e-04
1we6_A	111	Splicing factor, putative; structural genomics, ub	6e-06
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	7e-06
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	8e-06
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	4e-04
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	2e-05
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	2e-05
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	3e-05
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	3e-05
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	1e-04
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	1e-04
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	1e-04
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	5e-04

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae} Length = 148

 Score =  153 bits (388), Expect = 4e-47
 Identities = 64/133 (48%), Positives = 90/133 (67%), Gaps = 1/133 (0%)

Query: 124 IKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVN 183
           +K+  I   +  A+EY PE F  V MLYIN  +N +PVKAF+D+GAQTTIMS   A +  
Sbjct: 1   MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTG 60

Query: 184 ITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKR 243
           ++R+ID R+ G A+GVG  +IIGRIH  Q+ IE  ++  SF+VL D  +D+L+GLDMLKR
Sbjct: 61  LSRMIDKRFIGEARGVGTGKIIGRIHQAQVKIETQYIPCSFTVL-DTDIDVLIGLDMLKR 119

Query: 244 HQVQIAIENDFLT 256
           H   + ++ + L 
Sbjct: 120 HLACVDLKENVLR 132

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens} Length = 148

 Score =  153 bits (387), Expect = 5e-47
 Identities = 81/129 (62%), Positives = 96/129 (74%)

Query: 128 NIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRL 187
           +   +   +    P   G V MLYINC+VNGHP+KAF+DSGAQ TIMS ACA R NI RL
Sbjct: 3   SSHHHHHHSSGLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRL 62

Query: 188 IDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQ 247
           +D RWAG+AKGVG QRIIGR+H+ QI IE DFL  SFS+LEDQPMDMLLGLDML+RHQ  
Sbjct: 63  VDRRWAGVAKGVGTQRIIGRVHLAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQCS 122

Query: 248 IAIENDFLT 256
           I ++ + L 
Sbjct: 123 IDLKKNVLV 131

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 102

 Score = 85.8 bits (212), Expect = 1e-21
 Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 4/86 (4%)

Query: 1  MKVTVTSLDNEC----FLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKT 56
          M +TV  +  +     F L V+ D EL NF+  CE++SG+ A+E  I +    L D+  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 57 LKDYNIQDGDLVLLKRVQVARTSNPS 82
          L  Y ++DGD+V+L +        P 
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPG 93

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 106

 Score = 52.0 bits (125), Expect = 5e-09
 Identities = 15/83 (18%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + +T  +   E   LD+     +   K            +I + + G  L D+ KT+ + 
Sbjct: 2  VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDS-KTVSEC 60

Query: 61 NIQDGD-LVLLKRVQVARTSNPS 82
           ++DGD +V +   + +  +  +
Sbjct: 61 GLKDGDQVVFMVSQKKSTKTKVT 83

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A Length = 90

 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 2/83 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V V +LD++     V   + ++ FK        I +++  + +QG  L D+ K L++Y
Sbjct: 6  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEY 64

Query: 61 NIQDGDLVLLKRVQVARTSNPSD 83
          N+    + L++R    +T  PS 
Sbjct: 65 NVGGKVIHLVER-APPQTHLPSG 86

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 50.1 bits (120), Expect = 2e-08
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           +KVTV +   +     V++   ++  K     +      ++ + F G  L D   +L   
Sbjct: 18  IKVTVKTPK-DKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPD-SLAQC 75

Query: 61  NIQDGD---LVLLKRVQVARTSNPS 82
            ++DG    LV+ ++ +      P+
Sbjct: 76  GVRDGLTVHLVIKRQHRAMGNECPA 100

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B Length = 98

 Score = 48.6 bits (116), Expect = 6e-08
 Identities = 30/98 (30%), Positives = 43/98 (43%), Gaps = 4/98 (4%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 61 NIQDGD---LVLLKRVQVARTSNPSDDFARILRQQYEE 95
          NIQ      LVL  R      S+  D  A  L   +  
Sbjct: 60 NIQKESTLHLVLRLRGGRDPNSSSVDKLAAALEHHHHH 97

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 125

 Score = 49.5 bits (118), Expect = 7e-08
 Identities = 20/85 (23%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           +KVTV +   E     V E+  ++ FK     +      ++ + F G  L D   TL  +
Sbjct: 33  IKVTVKTPK-EKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQD-TLIQH 90

Query: 61  NIQDGD---LVLLKRVQVARTSNPS 82
            I DG    LV+ +    +     +
Sbjct: 91  GIHDGLTVHLVIKRDPNSSSVDKYA 115

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 81

 Score = 48.1 bits (115), Expect = 7e-08
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++TV +L      L V ED  +   K     +  +  ++  + F+G AL D  K L DY
Sbjct: 8  MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADG-KRLSDY 66

Query: 61 NIQDGD---LVL 69
          +I       LV+
Sbjct: 67 SIGPNSKLNLVV 78

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A Length = 96

 Score = 48.2 bits (115), Expect = 7e-08
 Identities = 27/85 (31%), Positives = 39/85 (45%), Gaps = 4/85 (4%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 2  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 60

Query: 61 NIQDGD---LVLLKRVQVARTSNPS 82
          NIQ      LVL  R       +P 
Sbjct: 61 NIQKESTLHLVLRLRGYADLREDPD 85

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} Length = 85

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L     +L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 4  MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 62

Query: 61 NIQDGD---LVL 69
          NI +     L+L
Sbjct: 63 NIHNHSALYLLL 74

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 Length = 88

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          +++ + +L  + F +++     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 68

Query: 61 NIQDGD---LVL 69
          NIQ      LVL
Sbjct: 69 NIQKESTLHLVL 80

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 85

 Score = 47.7 bits (114), Expect = 9e-08
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 4  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 62

Query: 61 NIQDGD---LVL 69
          NIQ      L+L
Sbjct: 63 NIQKWSTLFLLL 74

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: k.45.1.1 PDB: 3dbr_I 3dbl_I Length = 88

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M + V +L  +   +D+    ++E  K   E + GI  Q+  + + G  + D  KT  DY
Sbjct: 13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADY 71

Query: 61 NIQDGD---LVL 69
           I  G    LVL
Sbjct: 72 KILGGSVLHLVL 83

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 87

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V V + D   +   ++ +  +   K   E Q G+  ++  +EFQG  L D    L  Y
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIY 66

Query: 61 NIQDGD---LVLLKR 72
           IQD D   L   K 
Sbjct: 67 GIQDSDTLILSKKKG 81

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} Length = 84

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 25/70 (35%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          MK  V +L+   F L+V     L   K   E    I   +  +   G  ++    T++  
Sbjct: 11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILREDLTVEQC 70

Query: 61 NIQDGDLVLL 70
           I     + L
Sbjct: 71 QIVPTSDIQL 80

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B Length = 88

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M + V +L  +   +D+    ++E  K   E + GI  Q+  + + G  + D  KT  DY
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADY 59

Query: 61 NIQDGD---LVL 69
           I  G    LVL
Sbjct: 60 KILGGSVLHLVL 71

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 96

 Score = 47.4 bits (113), Expect = 2e-07
 Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 2/70 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V+V +  +      ++E+  +  FK         +A  + + F G  L D    L   
Sbjct: 18 IRVSVKTPQDC-HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQR 75

Query: 61 NIQDGDLVLL 70
           I DG  V +
Sbjct: 76 GILDGSTVHV 85

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 95

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 18/88 (20%), Positives = 40/88 (45%), Gaps = 7/88 (7%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG---ISAQEIAIEFQGNALVDNKKTL 57
          M+VT+ +L  + F +D+  +  ++  K   E + G          + + G  L D+   L
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDT-AL 59

Query: 58 KDYNIQDGD---LVLLKRVQVARTSNPS 82
          K+Y I + +   +++ K   V+  +  +
Sbjct: 60 KEYKIDEKNFVVVMVTKPKAVSTPAPAT 87

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 100

 Score = 47.0 bits (112), Expect = 3e-07
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          +KVTV +   +     V++   ++  K     +      ++ + F G  L D   +L   
Sbjct: 23 IKVTVKTP-KDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPD-SLAQC 80

Query: 61 NIQDGD---LVL 69
           ++DG    LV+
Sbjct: 81 GVRDGLTVHLVI 92

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} Length = 111

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 36  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 94

Query: 61  NIQDGD---LVL 69
           NIQ      LVL
Sbjct: 95  NIQKESTLHLVL 106

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A Length = 76

 Score = 46.1 bits (110), Expect = 3e-07
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M + V +L  +   +D+    ++E  K   E + GI  Q+  + + G  + D  KT  DY
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADY 59

Query: 61 NIQDGD---LVL 69
           I  G    LVL
Sbjct: 60 KILGGSVLHLVL 71

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} Length = 79

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + + V +        +V     + + K       G+      + F+G  L D    L +Y
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEY 63

Query: 61 NIQDGD---LVL 69
           ++      + L
Sbjct: 64 GLKPLSTVFMNL 75

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} Length = 88

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V V +LD++     V   + ++ FK        I +++  + +QG  L D+ K L++Y
Sbjct: 18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEY 76

Query: 61 NIQDGDLVLLKR 72
          N+    + L++R
Sbjct: 77 NVGGKVIHLVER 88

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 89

 Score = 46.2 bits (110), Expect = 4e-07
 Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 6/74 (8%)

Query: 1  MKVTVTSLDN--ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
          M + V ++D    C + DVS    +E  +        +  +   + ++G  L +   TL 
Sbjct: 8  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGY-TLF 66

Query: 59 DYNIQDGD---LVL 69
          DY++   D   L++
Sbjct: 67 DYDVGLNDIIQLLV 80

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... Length = 76

 Score = 45.8 bits (109), Expect = 4e-07
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 61 NIQDGD---LVL 69
          NIQ      LVL
Sbjct: 60 NIQRESTLHLVL 71

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} Length = 101

 Score = 46.2 bits (110), Expect = 5e-07
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 5/72 (6%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          MKVTV +   E     V E+  ++ FK     +      ++ + F G  L D   TL  +
Sbjct: 26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQD-TLSQH 83

Query: 61 NIQDGD---LVL 69
           I DG    LV+
Sbjct: 84 GIHDGLTVHLVI 95

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} Length = 114

 Score = 46.3 bits (110), Expect = 5e-07
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           ++   +L  +   L+V     ++N K+  + + GI   +  + + G  L D  +TL DY
Sbjct: 10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG-RTLSDY 68

Query: 61 NIQDGD---LVL 69
          NIQ      LVL
Sbjct: 69 NIQRESTLHLVL 80

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S Length = 77

 Score = 45.3 bits (108), Expect = 6e-07
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 1  MKVTVTSLD-NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKD 59
          M + +      + + ++V+ +  +  FK      +GI      + + G  L D++ T++ 
Sbjct: 3  MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQ-TVES 61

Query: 60 YNIQDGD-LVLLKR 72
          Y+IQDG  + L+K 
Sbjct: 62 YHIQDGHSVHLVKS 75

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A Length = 76

 Score = 45.0 bits (107), Expect = 9e-07
 Identities = 16/75 (21%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M V V    +  F ++V  D  +   K     Q G+ A ++ + F G  L ++  T+++ 
Sbjct: 1  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH-LTVQNC 59

Query: 61 NIQDGD---LVLLKR 72
          +++      +V   R
Sbjct: 60 DLEQQSIVHIVQRPR 74

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} Length = 88

 Score = 45.1 bits (107), Expect = 9e-07
 Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + + V +        +V     + + K       G+      + F+G  L D    L +Y
Sbjct: 5  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEY 63

Query: 61 NIQDGD---LVL 69
           ++      + L
Sbjct: 64 GLKPLSTVFMNL 75

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A Length = 85

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG---ISAQEIAIEFQGNALVDNKKTL 57
          + +T+ +L  + F + +  D  ++  K   E + G          + + G  L D+   +
Sbjct: 6  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV-PI 64

Query: 58 KDYNIQDGDLVLL 70
          +DY I + + V++
Sbjct: 65 RDYRIDEKNFVVV 77

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} Length = 94

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + VTV    ++ F ++V     + + K    +      + + + + G  L D+ + L +Y
Sbjct: 16 IHVTVKFP-SKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEY 74

Query: 61 NIQDGDLVLL 70
           I +   +++
Sbjct: 75 GITEFSEIVV 84

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} Length = 101

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 17/74 (22%), Positives = 36/74 (48%), Gaps = 3/74 (4%)

Query: 1  MKVTVTSLD-NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKD 59
          M + +      + + ++V+ +  +  FK      +GI      + + G  L D++ T++ 
Sbjct: 27 MSLNIHIKSGQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQ-TVES 85

Query: 60 YNIQDGD-LVLLKR 72
          Y+IQDG  + L+K 
Sbjct: 86 YHIQDGHSVHLVKS 99

>3u5c_F RP14, S2, YS8, 40S ribosomal protein S5; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_F 3o30_D 3o2z_D 3u5g_F 3jyv_G* 2noq_F 1s1h_G 3iz6_F Length = 225

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 8/72 (11%), Positives = 15/72 (20%), Gaps = 4/72 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M  T   ++ +     V E   +       E       +           V+  K     
Sbjct: 1  MSDTEAPVEVQEDFEVVEEFTPVVLATPIPEEVQQAQTEIKLFNKWSFEEVEV-KDASLV 59

Query: 61 NIQDGD---LVL 69
          +         V 
Sbjct: 60 DYVQVRQPIFVA 71

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A Length = 115

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 13/68 (19%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 8   LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGD- 66
           L+ +  +  +    ++   K      +G+ A +  ++++G  + D+  +L  YN+  G  
Sbjct: 43  LNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSN-SLAYYNMASGAV 101

Query: 67  --LVLLKR 72
             L L +R
Sbjct: 102 IHLALKER 109

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 44.2 bits (104), Expect = 6e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 61 NIQD 64
          NIQ 
Sbjct: 60 NIQK 63

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B Length = 152

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D + TL DY
Sbjct: 77  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLSDY 135

Query: 61  NIQDGD---LVL 69
           NIQ      LVL
Sbjct: 136 NIQKESTLHLVL 147

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 Length = 111

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 1   MKVTV-TSLDNECFLLDV-SEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
           ++V+     D +   + V S    + + K     +  I A +  +  +   L DN  +L 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNM-SLA 88

Query: 59  DYNIQDGDLVLL 70
            YN+  G+++ L
Sbjct: 89  HYNVGAGEILTL 100

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 Length = 106

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           ++ +     +   L V     + + K       G+        F G  L  +K   ++ 
Sbjct: 24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEEL 82

Query: 61 NIQDGD---LVLLKRVQ 74
           I       +++ + VQ
Sbjct: 83 KIPKDYVVQVIVSQPVQ 99

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 44.3 bits (104), Expect = 8e-06
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 79

Query: 61 NIQD 64
          NIQ 
Sbjct: 80 NIQK 83

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} Length = 172

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D + TL DY
Sbjct: 97  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLSDY 155

Query: 61  NIQDGD---LVL 69
           NIQ      LVL
Sbjct: 156 NIQKESTLHLVL 167

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B Length = 169

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     ++N K+  + + GI   +  + F G  L ++ +TL DY
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQL-EDGRTLSDY 59

Query: 61 NIQDGD 66
          NIQ   
Sbjct: 60 NIQKES 65

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 105

 Score = 41.9 bits (98), Expect = 2e-05
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 1   MKVTVTSLDNECFLLDVSE-----DLELENFKAFCEVQSG------ISAQEI----AIEF 45
           M V V  +D E   + V +     DL+    +     Q        IS   +     +  
Sbjct: 8   MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46  QGNALVDNKKTLKDYNIQDGDLVLLKRVQVARTSNPS 82
            G  L +++K L+DY I++ D V   +    ++   S
Sbjct: 68  AGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQKSGPSS 104

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 Length = 78

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 13/74 (17%), Positives = 31/74 (41%), Gaps = 6/74 (8%)

Query: 1  MKVTVTSLDNE--CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
          M + V ++D      +  +S   ++E  +   +    +      + ++G  + D   TL 
Sbjct: 3  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGH-TLF 61

Query: 59 DYNIQDGD---LVL 69
          DY ++  D   L++
Sbjct: 62 DYEVRLNDTIQLLV 75

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A Length = 368

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG---ISAQEIAIEFQGNALVDNKKTL 57
          + +T+ +L  + F + +  D  ++  K   E + G          + + G  L D+   +
Sbjct: 8  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPI 66

Query: 58 KDYNIQDGDLVLLKRVQVARTSNP 81
          +DY I + + V++   +       
Sbjct: 67 RDYRIDEKNFVVVMVTKTKAGQGT 90

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} Length = 85

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 17/70 (24%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          +K+TV     +   L VS D  +++ K+  +  + +  +   + F+G  LV+   TLK  
Sbjct: 13 IKLTV-KFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVETS-TLKQS 70

Query: 61 NIQDGDLVLL 70
          ++  G  ++L
Sbjct: 71 DVGSGAKLML 80

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* Length = 307

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D + TL DY
Sbjct: 234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGR-TLSDY 292

Query: 61  NIQDGD---LVL 69
           NIQ      LVL
Sbjct: 293 NIQKESTLHLVL 304

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p Length = 128

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     ++N K+  + + GI   +  + F G  L D  +TL DY
Sbjct: 1  MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 61 NIQDGD 66
          NIQ   
Sbjct: 60 NIQKES 65

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A Length = 159

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 18/123 (14%), Positives = 36/123 (29%), Gaps = 16/123 (13%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG-NALVDNKKTLKD 59
             +TV  L    F + +S  + +   KA    + G+ A +  +        + ++  L  
Sbjct: 3   WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLAS 62

Query: 60  YNIQDGDLVLLKRVQVARTSNP---------------SDDFARILRQQYEEREKREQLRQ 104
             +  G  VLL   +     +                       L+QQ    E  +    
Sbjct: 63  QGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLF 122

Query: 105 RML 107
            + 
Sbjct: 123 WLT 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 3e-04
 Identities = 40/299 (13%), Positives = 92/299 (30%), Gaps = 105/299 (35%)

Query: 3   VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE---------FQG----NA 49
           + + + ++   +L++ + L  +    +       S  ++ I           +     N 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 50  L-----VDNKKTLKDYNIQDGDLVLLKRVQVA------RTSNPSDD-------------- 84
           L     V N K    +N+    L+  +  QV        T++ S D              
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 85  FARILRQQYEEREKREQLRQRMLTADPFDTEAQKLIAEEIK-------------KSNIQA 131
             + L  + ++      L + +LT +P       +IAE I+                +  
Sbjct: 307 LLKYLDCRPQD------LPREVLTTNPR---RLSIIAESIRDGLATWDNWKHVNCDKLTT 357

Query: 132 NMEAAMEY-NPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNIT-RLID 189
            +E+++    P  +     ++    V       F  S               +I   L+ 
Sbjct: 358 IIESSLNVLEPAEYRK---MFDRLSV-------FPPS--------------AHIPTILLS 393

Query: 190 TRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQI 248
             W  + K   V  ++ ++H              +S++E QP +  + +       + +
Sbjct: 394 LIWFDVIKSD-VMVVVNKLH-------------KYSLVEKQPKESTISI-----PSIYL 433

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 Length = 95

 Score = 37.7 bits (87), Expect = 5e-04
 Identities = 13/84 (15%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + V +  L++   L     +  +   K            ++ + +QG  L D  +TL   
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLK---SKYFPGQESQMKLIYQGRLLQDPARTLSSL 64

Query: 61 NIQDGDLVLLKRVQVARTSNPSDD 84
          NI +  ++   R       +    
Sbjct: 65 NITNNCVIHCHRSPPGAAVSGPSA 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	280
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	100.0
2i1a_A	148	DNA damage-inducible protein DDI1; acid protease f	100.0
3phx_B	79	Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu	99.8
3plu_A	93	Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-	99.79
4fbj_B	88	NEDD8; effector-HOST target complex, glutamine dea	99.79
2kk8_A	84	Uncharacterized protein AT4G05270; solution arabid	99.78
1uel_A	95	HHR23B, UV excision repair protein RAD23 homolog B	99.77
1ndd_A	76	NEDD8, protein (ubiquitin-like protein NEDD8); pro	99.77
4dwf_A	90	HLA-B-associated transcript 3; ubiquitin-like doma	99.76
1uh6_A	100	Ubiquitin-like 5; beta-grAsp fold, structural geno	99.76
4a20_A	98	Ubiquitin-like protein MDY2; protein binding, GET-	99.76
2uyz_B	79	Small ubiquitin-related modifier 1; sumoylation, c	99.76
3v6c_B	91	Ubiquitin; structural genomics, structural genomic	99.76
3a9j_A	76	Ubiquitin; protein complex, cytoplasm, isopeptide	99.76
2faz_A	78	Ubiquitin-like containing PHD and ring finger DOM	99.75
2wyq_A	85	HHR23A, UV excision repair protein RAD23 homolog A	99.75
2lxa_A	87	Ubiquitin-like protein MDY2; ubiquitin-like domain	99.75
3m62_B	106	UV excision repair protein RAD23; armadillo-like r	99.75
4eew_A	88	Large proline-rich protein BAG6; ubiquitin-like fo	99.75
3n3k_B	85	Ubiquitin; hydrolase, protease, thiol protease, DU	99.75
2kan_A	94	Uncharacterized protein AR3433A; ubiquitin fold, a	99.75
2bwf_A	77	Ubiquitin-like protein DSK2; signaling protein, UB	99.74
1sif_A	88	Ubiquitin; hydrophobic mutants, folding, stability	99.74
3dbh_I	88	NEDD8; cell cycle, activating enzyme, apoptosis, m	99.74
1v2y_A	105	3300001G02RIK protein; hypothetical protein, ubiqu	99.74
3k9o_B	96	Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b	99.74
2hj8_A	88	Interferon-induced 17 kDa protein; HR2873B, human	99.74
3mtn_B	85	UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit	99.74
4hcn_B	98	Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas	99.73
1wh3_A	87	59 kDa 2'-5'-oligoadenylate synthetase like protei	99.73
1wyw_B	97	Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho	99.73
2dzi_A	81	Ubiquitin-like protein 4A; GDX, structural genomic	99.73
1wy8_A	89	NP95-like ring finger protein, isoform A; ubiquiti	99.73
1yx5_B	98	Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s	99.73
1v5o_A	102	1700011N24RIK protein; hypothetical protein, ubiqu	99.73
1ttn_A	106	DC-UBP, dendritic cell-derived ubiquitin-like prot	99.71
1yqb_A	100	Ubiquilin 3; structural genomics consortium, ubiqu	99.71
2klc_A	101	Ubiquilin-1; ubiquitin-like, structural genomics,	99.71
3b1l_X	76	E3 ubiquitin-protein ligase parkin; proteasome, AL	99.54
3vdz_A	111	Ubiquitin-40S ribosomal protein S27A; gadolinium,	99.7
2l7r_A	93	Ubiquitin-like protein FUBI; structural genomics,	99.69
1wgd_A	93	Homocysteine-responsive endoplasmic reticulum- res	99.69
1wju_A	100	NEDD8 ultimate buster-1; ubiquitin-like domain, st	99.69
2daf_A	118	FLJ35834 protein; hypothetical protein FLJ35834, u	99.69
1wx8_A	96	Riken cDNA 4931431F19; ubiquitin-like domain, ubiq	99.68
1j8c_A	125	Ubiquitin-like protein hplic-2; ubiquitin-like dom	99.68
1wxv_A	92	BAG-family molecular chaperone regulator-1; struct	99.68
3l0w_B	169	Monoubiquitinated proliferating cell nuclear antig	99.68
2ojr_A	111	Ubiquitin; lanthide-binding TAG, terbium, TB, SAD	99.67
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.67
2fnj_B	118	Transcription elongation factor B polypeptide 2; b	99.66
2kdi_A	114	Ubiquitin, vacuolar protein sorting-associated pro	99.66
2kdb_A	99	Homocysteine-responsive endoplasmic reticulum- res	99.66
4dbg_A	105	Ranbp-type and C3HC4-type zinc finger-containing;	99.66
1wx7_A	106	Ubiquilin 3; ubiquitin-like domain, structural gen	99.66
3rt3_B	159	Ubiquitin-like protein ISG15; ubiquitin-like domai	99.66
1v5t_A	90	8430435I17RIK protein; hypothetical protein, ubiqu	99.66
1wgh_A	116	Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo	99.66
2gow_A	125	HCG-1 protein, ubiquitin-like protein 3; BC059385,	99.66
1x1m_A	107	Ubiquitin-like protein SB132; structural genomics,	99.65
4ajy_B	118	Transcription elongation factor B polypeptide 2; E	99.64
3m63_B	101	Ubiquitin domain-containing protein DSK2; armadill	99.64
1we6_A	111	Splicing factor, putative; structural genomics, ub	99.64
1wia_A	95	Hypothetical ubiquitin-like protein (riken cDNA 20	99.64
3q3f_A	189	Ribonuclease/ubiquitin chimeric protein; domain SW	99.63
3u5e_m	128	60S ribosomal protein L40; translation, ribosome,	99.63
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.63
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.63
2kd0_A	85	LRR repeats and ubiquitin-like domain-containing p	99.63
1se9_A	126	Ubiquitin family; ubiquitin-like, cell-free, wheat	99.62
1wgg_A	96	Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti	99.62
3b08_A	152	Polyubiquitin-C, ubiquitin; protein complex, signa	99.6
3u5c_f	152	40S ribosomal protein S31; translation, ribosome,	99.6
1v86_A	95	DNA segment, CHR 7, wayne state university 128, ex	99.6
1we7_A	115	SF3A1 protein; structural genomics, ubiquitin-like	99.58
3u30_A	172	Ubiquitin, linear DI-ubiquitin; immune system; 2.4	99.58
2dzj_A	88	Synaptic glycoprotein SC2; ubiquitin-like fold, st	99.58
2kjr_A	95	CG11242; UBL, ubiquitin, ubiquitin-like, structura	99.57
2kj6_A	97	Tubulin folding cofactor B; methods development, N	99.54
4b6w_A	86	Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik	99.52
2dzm_A	100	FAS-associated factor 1; ubiquitin-like domain, HF	99.52
3ai5_A	307	Yeast enhanced green fluorescent protein, ubiquit;	99.51
1oqy_A	368	HHR23A, UV excision repair protein RAD23 homolog A	99.51
1wf9_A	107	NPL4 family protein; beta-grAsp fold like domain,	99.5
1v6e_A	95	Cytoskeleton-associated protein 1; tubulin-specifi	99.47
2xzm_9	189	RPS31E; ribosome, translation; 3.93A {Tetrahymena	99.46
2kzr_A	86	Ubiquitin thioesterase OTU1; structural genomics,	99.44
2io1_B	94	Small ubiquitin-related modifier 3 precursor; SUMO	99.41
1t0y_A	122	Tubulin folding cofactor B; ubiquitin-like, cytosk	99.41
2io0_B	91	Small ubiquitin-related modifier 2 precursor; SUMO	99.36
1wm3_A	72	Ubiquitin-like protein SMT3B; ubiquitin fold, half	99.35
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.33
3slz_A	132	GAG-Pro-POL polyprotein; beta sheet and dimer, pro	99.28
3a4r_A	79	Nfatc2-interacting protein; ubiquitin fold, coiled	99.28
2d07_B	93	Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho	99.27
1wjn_A	97	Tubulin-folding protein TBCE; ubiquitin-like domai	99.27
1wz0_A	104	Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li	99.24
1fmb_A	104	EIAV protease; hydrolase (acid proteinase), RNA-di	99.22
2eke_C	106	Ubiquitin-like protein SMT3; UBC9, SUMO binding mo	99.19
2k8h_A	110	Small ubiquitin protein; SUMO, post-translational	99.17
3ec0_A	99	Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1	98.97
2hs1_A	99	HIV-1 protease; ultra-high resolution active site	98.92
3kyd_D	115	Small ubiquitin-related modifier 1; SUMO, thioeste	98.83
3ka2_A	203	[L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydro	98.82
2hah_A	116	Protease, retropepsin; retroviral, aspartyl, hydro	98.71
3pge_A	200	SUMO-modified proliferating cell nuclear antigen;	98.67
2pjh_A	80	Protein NPL4, nuclear protein localization protein	98.64
3tix_A	207	Ubiquitin-like protein SMT3, RNA-induced transcri	98.52
4efo_A	94	Serine/threonine-protein kinase TBK1; ubiquitin li	98.34
3v7o_A	227	Minor nucleoprotein VP30; ssgcid, seattle structur	98.31
3ka2_A	203	[L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydro	98.31
3sqf_A	114	Protease; folded monomer, retropepsin, D-type retr	98.18
3goe_A	82	DNA repair protein RAD60; SUMO-like domain, sumoyl	98.14
2jxx_A	97	Nfatc2-interacting protein; nuclear factor of acti	98.12
2kc2_A	128	Talin-1, F1; FERM, adhesion, cell membrane, cell p	97.98
2rsp_A	124	RSV protease; hydrolase(aspartyl proteinase); 2.00	97.95
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	97.92
2bps_A	81	YUKD protein; ubiquitin-like protein, ubiquitin; 2	97.75
3ix6_A	360	TS, tsase, thymidylate synthase; niaid, ssgcid, se	97.7
2al3_A	90	TUG long isoform; TUG UBL1 insulin, endocytosis/ex	97.61
2l76_A	95	Nfatc2-interacting protein; ubiquitin-like domain,	97.52
3qx1_A	84	FAS-associated factor 1; UBX, protein binding, P97	97.51
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	97.44
3liy_A	116	Protease; hydrolase, hydrolase-hydrolase inhibitor	97.25
2dzk_A	109	UBX domain-containing protein 2; ubiquitin-like fo	97.19
2pma_A	146	Uncharacterized protein; APC86035.2, protein LPG00	96.81
1wj4_A	124	KIAA0794 protein; UBX domain, beta-grAsp fold, str	96.76
2l32_A	74	Small archaeal modifier protein 2; protein BIN; NM	96.49
2cr5_A	109	Reproduction 8; UBX domain, D0H8S2298E protein, st	96.32
1s3s_G	127	P47 protein; AAA ATPase, protein-protein complex,	95.89
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	95.73
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	95.41
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	95.07
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	94.85
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	94.8
4a3p_A	217	Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H	94.79
3jyu_A	231	Ubiquitin carboxyl-terminal hydrolase; domain in u	94.72
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	94.5
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	94.44
1b5f_A	239	Protein (cardosin A); hydrolase, aspartic proteina	94.34
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	94.28
3ivf_A	371	Talin-1; FERM domain, cell membrane, cell projecti	94.25
4e71_A	111	Plexin-B2, MM1; transmembrane, signaling, RBD, str	94.2
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	94.13
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	94.07
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	93.87
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	93.67
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	93.62
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	93.51
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	93.47
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	93.27
2daj_A	91	KIAA0977 protein, COBL-like 1; ubiquitin-like doma	93.1
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	93.09
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	93.07
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	93.04
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	92.79
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	92.73
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	92.65
3qvc_A	451	Histo-aspartic protease; HAP, plasmepsin, zymogen,	92.39
1qdm_A	478	Prophytepsin; aspartic proteinases, saposin-like d	92.39
2r2o_A	138	Plexin-B1; effector domain, structural genomics, s	92.33
2jys_A	107	Protease/reverse transcriptase; retroviral proteas	92.16
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	92.15
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	92.09
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	92.07
3cms_A	323	Chymosin B; hydrolase, acid proteinase; 2.00A {Bos	92.0
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	91.97
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	91.92
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	91.86
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	91.71
4aa9_A	320	Chymosin; hydrolase, aspartic peptidase, rennet; H	91.68
1lya_B	241	Cathepsin D; lysosomal aspartic protease; HET: NAG	91.5
1yg9_A	330	Aspartic protease BLA G 2; allegren, hydrolase, al	91.05
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	91.04
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	90.96
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	90.88
3k1w_A	341	Renin; protease, alternative splicing, aspartyl pr	90.44
1lya_A	97	Cathepsin D; lysosomal aspartic protease; HET: NAG	90.33
1oey_A	83	P67-PHOX, neutrophil cytosol factor 2; immune syst	90.05
3h6n_A	127	Plexin-D1; structural genomics consortium, SGC, me	89.96
1dpj_A	329	Proteinase A; proteinase A, hydrolase-hydrolase in	89.85
3lpj_A	455	Beta-secretase 1; alzheimer'S, aspartyl protease,	89.84
1j71_A	334	Candidapepsin, aspartic proteinase; candida tropic	89.75
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	89.63
3fv3_A	339	SAPP1P-secreted aspartic protease 1; secreted aspa	89.51
1am5_A	324	Pepsin, acid proteinase; aspartyl protease, hydrol	89.47
1tzs_A	351	Cathepsin E; hydrolase, aspartic protease, activat	89.44
1miq_A	375	Plasmepsin; aspartic proteinase zymogen, domain op	89.21
1htr_B	329	Gastricsin; aspartyl protease; 1.62A {Homo sapiens	88.95
1mpp_A	361	Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomu	88.88
3vf3_A	402	Beta-secretase 1; structure-based drug design, hyd	88.21
1y8x_B	98	Ubiquitin-activating enzyme E1C; ubiquitin-conjuga	88.13
1bxo_A	323	Protein (penicillopepsin); hydrolase, phosphonate	88.1
4e74_A	117	Plexin-A4; RBD, structural genomics, structural ge	87.91
1ibq_A	325	Aspergillopepsin; aspartic proteinase, hydrolase;	87.41
2bju_A	453	Plasmepsin II; aspartic proteinase, drug design, m	87.41
2qzx_A	342	Candidapepsin-5; aspartic proteinase, aspartyl pro	87.09
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	86.82
2ewy_A	383	Beta-secretase 2; BACE2, aspartic protease, hydrol	86.65
1izd_A	323	Aspartic proteinase; sugar binding, acid protease,	86.57
3s8i_A	148	Protein DDI1 homolog 1; protease, structural genom	86.41
1wkr_A	340	Polyporopepsin; hydrolase, hydrolase-hydrolase inh	86.16
2x0b_A	383	Renin; hydrolase-hormone complex, hydrolase hormon	85.8
2juo_A	89	GA-binding protein alpha chain; OST, ubiquitin, tr	85.5
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	85.44
2kvr_A	130	Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi	84.95
1oew_A	329	Endothiapepsin; hydrolase, aspartic proteinase mec	84.81
2apr_A	325	Rhizopuspepsin; hydrolase (aspartic proteinase); 1	84.56
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	84.35
3psg_A	370	Pepsinogen; hydrolase(acid proteinase zymogen); 1.	84.12
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	84.07
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	83.99
3pvk_A	342	Candidapepsin-2; hydrolase; 1.27A {Candida albican	83.8
3kuz_A	126	Plexin-C1; structural genomics, structural genomic	83.16
1t6e_X	381	Xylanase inhibitor; two beta-barrel domain structu	83.04
2kmc_A	102	Fermitin family homolog 1; kindlin, cytoskeleton,	83.03
3c9x_A	329	Trichoderma reesei aspartic protease; aspartic pro	82.71
3aup_A	403	SBG7S, BG, basic 7S globulin; pepsin-like fold, pl	82.08
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	81.95
2qp8_A	395	Beta-secretase 1; BACE1, protease, alternative spl	81.56
3hm6_X	644	Plexin-B1; structural genomics consortium, SGC, me	81.2
3ig3_A	627	Plxna3 protein; plexin intracellular GAP RBD inact	80.75
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	80.67

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}

Probab=100.00  E-value=1e-34  Score=242.85  Aligned_cols=135  Identities=61%  Similarity=0.978  Sum_probs=112.8

Q ss_pred             HhhCCCcceeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEEC
Q psy8018         137 MEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIE  216 (280)
Q Consensus       137 ~e~~Pe~~~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG  216 (280)
                      --.-||+|+++.|+||+|+|||++++|||||||++|+||.+||+||||++..+.++.+.+.|+|+.++.|+++.++|+||
T Consensus        12 ~~~~~~~~~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig   91 (148)
T 3s8i_A           12 SGLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIE   91 (148)
T ss_dssp             ----------CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEET
T ss_pred             CCcCceeccccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEEC
Confidence            34569999999999999999999999999999999999999999999998888888889999999999999999999999


Q ss_pred             CeEEEeEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecCCCccceeeccc
Q psy8018         217 NDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLD  274 (280)
Q Consensus       217 ~~~~~~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~  274 (280)
                      ++.++|+|.|+++.++|+|||||||++++|+|||++++|+++.+. ++  .+|+-..|
T Consensus        92 ~~~~~~~~~Vle~~~~d~LLGmD~L~~~~~~ID~~~~~L~l~~~~-~~--~pfl~~~~  146 (148)
T 3s8i_A           92 GDFLQCSFSILEDQPMDMLLGLDMLRRHQCSIDLKKNVLVIGTTG-TQ--TYFLPEGE  146 (148)
T ss_dssp             TEEEEEEEEEETTCSSSEEECHHHHHHTTCEEETTTTEEECTTTC-CE--EECCCGGG
T ss_pred             CEEEEEEEEEeCCCCcCeeccHHHHHhCCEEEEcCCCEEEEccCC-eE--EeecCccc
Confidence            999999999999889999999999999999999999999998864 33  44555544

>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-34  Score=238.06  Aligned_cols=145  Identities=44%  Similarity=0.757  Sum_probs=101.9

Q ss_pred             HHhhhHHHHHHHhHhhCCCcceeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceee
Q psy8018         124 IKKSNIQANMEAAMEYNPETFGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQR  203 (280)
Q Consensus       124 i~q~~i~~~~~~a~e~~Pe~~~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~  203 (280)
                      |||++|+|||+.|+|+.||.|.+..++|++|+|||++++|+|||||++|+||+++|+++||....+.++.+.+.|+|+..
T Consensus         1 ~~~~~i~~~~~~a~e~~p~~~~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~   80 (148)
T 2i1a_A            1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK   80 (148)
T ss_dssp             ----------------------CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC----------
T ss_pred             CcHHHHHHHHHhhhhhCchhhcccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc
Confidence            79999999999999999999999999999999999999999999999999999999999998776777767788998877


Q ss_pred             EEeEEEEEEEEECCeEEEeEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecCCCccceeeccc
Q psy8018         204 IIGRIHMVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLEDQPMDMLLGLD  274 (280)
Q Consensus       204 ~~g~i~~~~i~IG~~~~~~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~  274 (280)
                      ..|+++..+++||+..++++|.|++ .++|+|||+|||+++++.|||++++|++++     ..+.|+-..|
T Consensus        81 ~~~~~~~~~i~ig~~~~~~~~~vl~-~~~d~iLG~d~L~~~~~~ID~~~~~l~l~~-----~~~~f~~~~~  145 (148)
T 2i1a_A           81 IIGRIHQAQVKIETQYIPCSFTVLD-TDIDVLIGLDMLKRHLACVDLKENVLRIAE-----VETSFLSEAE  145 (148)
T ss_dssp             -CEEEEEEEEEETTEEEEEEEEEEC-SSCSEEECHHHHHHTTCEEETTTTEEEETT-----EEEECCCTTT
T ss_pred             cccEEEEEEEEECCEEeceeEEEec-CCCCeEecHHHHhhCCEEEECCCCEEEEcc-----EEEecCChhh
Confidence            7899999999999999999999999 578999999999999999999999999975     4445655544

>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}

Probab=99.80  E-value=3.1e-19  Score=132.42  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         5 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~l~l~~r   76 (79)
T 3phx_B            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLR   76 (79)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEe
Confidence            79999999999999999999999999999999999999999999999999975 8999999999999999875

>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A

Probab=99.79  E-value=2.3e-19  Score=138.01  Aligned_cols=70  Identities=21%  Similarity=0.321  Sum_probs=67.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |+|+|++.+|++++++|+|++||.+||++|+++.|+|+++|+|+|+|++|+|+ .||++|||++|++|+|-
T Consensus        22 IqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~-~TL~dY~I~dgstLhL~   91 (93)
T 3plu_A           22 IEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDH-ISLEDYEVHDQTNLELY   91 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCc-CCHHHcCCCCCCEEEEE
Confidence            68999999999999999999999999999999999999999999999999986 89999999999999985

>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B

Probab=99.79  E-value=3.5e-19  Score=135.49  Aligned_cols=72  Identities=26%  Similarity=0.416  Sum_probs=69.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~l~l~~r   72 (88)
T 4fbj_B            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLA   72 (88)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTTTTTCCTTCEEEEECB
T ss_pred             CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999875 8999999999999999986

>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.78  E-value=4.4e-19  Score=134.18  Aligned_cols=72  Identities=22%  Similarity=0.212  Sum_probs=69.4

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCee-eCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNA-LVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~-L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|++.+|+|+++|+|+|+|++ |+|+ +||++|||++|++|+|+.+
T Consensus        11 ~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~-~tL~~y~I~~gs~i~lv~~   83 (84)
T 2kk8_A           11 MKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRED-LTVEQCQIVPTSDIQLEVS   83 (84)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSS-SBHHHHTCCTTSCEEEEEC
T ss_pred             eEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCc-CCHHHcCCCCCCEEEEEEc
Confidence            8999999999999999999999999999999999999999999999999 9875 9999999999999999874

>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.77  E-value=2.8e-18  Score=132.25  Aligned_cols=76  Identities=21%  Similarity=0.425  Sum_probs=71.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHH---hCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQ---SGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR   77 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e---~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~   77 (280)
                      |+|+|++.+|+.++++|++++||++||++|+..   +|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.++.++
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~g~~i~l~~~~~~~   79 (95)
T 1uel_A            1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD-TALKEYKIDEKNFVVVMVTKPKA   79 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTT-SBGGGGTCCSSSEEEEEESSCCC
T ss_pred             CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCc-CcHHHCCCCCCCEEEEEEeCCCC
Confidence            999999999999999999999999999999999   89999999999999999876 89999999999999999874433

>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A

Probab=99.77  E-value=2.8e-18  Score=125.29  Aligned_cols=72  Identities=26%  Similarity=0.416  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|++..+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~   72 (76)
T 1ndd_A            1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLA   72 (76)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999875 8999999999999999885

>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A

Probab=99.76  E-value=1.8e-18  Score=131.48  Aligned_cols=72  Identities=25%  Similarity=0.481  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|+|++.+|+.++++|++++||.+||++|+.++|+|+++|+|+|+|+.|.|+ +||++||| +|++|+|+.+.
T Consensus         6 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~-~tL~~~~i-~g~~i~l~~~~   77 (90)
T 4dwf_A            6 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVERA   77 (90)
T ss_dssp             EEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTC-TTEEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCC-CCHHHcCC-CCcEEEEEecC
Confidence            89999999999999999999999999999999999999999999999999875 89999999 89999999973

>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.76  E-value=8.5e-19  Score=136.91  Aligned_cols=71  Identities=20%  Similarity=0.238  Sum_probs=68.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|++.+|+.++++|+|++||++||++|++.+|+|+++|+|+|.|++|+|+ .||++|||++|++|+|..
T Consensus        29 m~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~-~TL~dygI~~gstlhL~~   99 (100)
T 1uh6_A           29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDH-VSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSS-CBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEe
Confidence            78999999999999999999999999999999999999999999999999876 999999999999999863

>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A

Probab=99.76  E-value=1.7e-18  Score=134.92  Aligned_cols=74  Identities=18%  Similarity=0.237  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCcEEEE--EeCCCccHHHHHHHH-HHHhCCCCcceEEEECCeeeCCCcCCccccCC-CCCCEEEEEEecc
Q psy8018           1 MKVTVTSLDNECFLL--DVSEDLELENFKAFC-EVQSGISAQEIAIEFQGNALVDNKKTLKDYNI-QDGDLVLLKRVQV   75 (280)
Q Consensus         1 M~ItV~~~~g~~~~l--eV~~~~tV~~LK~~I-e~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI-~~gd~l~l~~~~~   75 (280)
                      |+|+|++++|+.|++  +|+++.||++||++| ++..|+|+++|+|+|+|++|.|+ +||++||| ++|++|+|+.+++
T Consensus        20 m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~-~tL~dy~I~~~g~ti~lmvskp   97 (98)
T 4a20_A           20 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN-LFLSDLKVTPANSTITVMIKPN   97 (98)
T ss_dssp             EEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTT-CBGGGSCCBTTBCEEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCc-CCHHHcCcCCCCCEEEEEEeCC
Confidence            799999999998777  666999999999999 88899999999999999999986 89999999 9999999998643

>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B

Probab=99.76  E-value=1.9e-18  Score=128.11  Aligned_cols=72  Identities=19%  Similarity=0.354  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|+++.|+|+++|+|+|+|++|.|+ +||++|||++||+|+++.+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~-~tl~~~~i~~~~~i~l~~~   75 (79)
T 2uyz_B            4 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQE   75 (79)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCC-CCHHHcCCCCCCEEEEEEe
Confidence            78999999999999999999999999999999999999999999999999976 8999999999999999986

>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B

Probab=99.76  E-value=2.5e-18  Score=131.30  Aligned_cols=72  Identities=32%  Similarity=0.440  Sum_probs=69.4

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.|
T Consensus        18 m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~r   89 (91)
T 3v6c_B           18 MQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   89 (91)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-CBTGGGTCCTTCEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCc-CcHHHCCCCCCCEEEEEEe
Confidence            89999999999999999999999999999999999999999999999999976 8999999999999999864

>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...

Probab=99.76  E-value=5.3e-18  Score=123.81  Aligned_cols=72  Identities=32%  Similarity=0.445  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||+.|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|++..+
T Consensus         1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~   72 (76)
T 3a9j_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQRESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999875 8999999999999999986

>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=3.4e-18  Score=126.37  Aligned_cols=72  Identities=19%  Similarity=0.255  Sum_probs=68.6

Q ss_pred             CEEEEEcCCCcEE-EEE-eCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECF-LLD-VSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~-~le-V~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.+ +++ |++++||++||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus         3 m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~-~tL~~~~i~~g~~i~l~~r   76 (78)
T 2faz_A            3 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLFDYEVRLNDTIQLLVR   76 (78)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEe
Confidence            8999999999885 999 9999999999999999999999999999999999875 8999999999999999885

>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A

Probab=99.75  E-value=4.7e-18  Score=127.44  Aligned_cols=72  Identities=18%  Similarity=0.403  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHH---hCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQ---SGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e---~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|+..   +|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         6 m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~i~l~~~   80 (85)
T 2wyq_A            6 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMVT   80 (85)
T ss_dssp             EEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTT-SBGGGGCCCTTSEEEEEEC
T ss_pred             EEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCC-CCHHHcCCCCCCEEEEEEc
Confidence            789999999999999999999999999999998   89999999999999999875 8999999999999999986

>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}

Probab=99.75  E-value=1e-18  Score=133.33  Aligned_cols=72  Identities=15%  Similarity=0.228  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCcEEEEEeC--CCccHHHHHHHH-HHHhCCCCcceEEEECCeeeCCCcCCccccCC-CCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVS--EDLELENFKAFC-EVQSGISAQEIAIEFQGNALVDNKKTLKDYNI-QDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~--~~~tV~~LK~~I-e~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI-~~gd~l~l~~~   73 (280)
                      |+|+||+++|+.++++|+  +++||.+||++| ++..|+|+++|+|+|+||+|.|+ .||++||| ++|++|+|..+
T Consensus         2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~-~tL~~y~I~~~~stl~v~~~   77 (87)
T 2lxa_A            2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN-LFLSDLKVTPANSTITVMIK   77 (87)
T ss_dssp             CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTT-CBHHHHCCCGGGCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCc-CCHHHcCCCCCCCEEEEEcC
Confidence            899999999999988766  999999999999 99999999999999999999986 89999999 69999999885

>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2e-18  Score=136.05  Aligned_cols=72  Identities=21%  Similarity=0.320  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~~i~~g~~i~lv~~   73 (106)
T 3m62_B            2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDS-KTVSECGLKDGDQVVFMVS   73 (106)
T ss_dssp             -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTT-SBTTTTTCCTTCEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCc-CCHHHcCCCCCCEEEEEEc
Confidence            89999999999999999999999999999999999999999999999999985 8999999999999999987

>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}

Probab=99.75  E-value=4e-18  Score=129.01  Aligned_cols=71  Identities=25%  Similarity=0.489  Sum_probs=68.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|++++|+|+++|+|+|+|+.|.|+ .||++||| +|++|+|+.|
T Consensus        18 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i-~g~~i~lv~R   88 (88)
T 4eew_A           18 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVER   88 (88)
T ss_dssp             EEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTC-TTEEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCC-CcHHHcCC-CCcEEEEEEC
Confidence            78999999999999999999999999999999999999999999999999985 89999999 8999999864

>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.75  E-value=4.6e-18  Score=127.21  Aligned_cols=72  Identities=31%  Similarity=0.472  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|++.+++|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r   75 (85)
T 3n3k_B            4 MRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIHNHSALYLLLK   75 (85)
T ss_dssp             CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTT-CBTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCC-CCHHHCCCCCCCEEEEEEe
Confidence            89999999999999999999999999999999999999999999999999875 8999999999999999986

>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.75  E-value=5.7e-18  Score=130.67  Aligned_cols=74  Identities=16%  Similarity=0.299  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEecc
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQV   75 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~   75 (280)
                      |+|+|++++| .++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+++||++|||++|++|+|+.+..
T Consensus        16 ~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~   89 (94)
T 2kan_A           16 IHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI   89 (94)
T ss_dssp             EEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred             EEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence            7899999888 8999999999999999999999999999999999999998754899999999999999998733

>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S

Probab=99.74  E-value=7.9e-18  Score=123.65  Aligned_cols=71  Identities=24%  Similarity=0.456  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++ +|+.++++|+++.||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus         5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~   75 (77)
T 2bwf_A            5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKS   75 (77)
T ss_dssp             EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCC-CCHHHcCCCCCCEEEEEEc
Confidence            6899999 999999999999999999999999999999999999999999876 8999999999999999875

>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=6.2e-18  Score=128.56  Aligned_cols=72  Identities=28%  Similarity=0.452  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus        10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~r   81 (88)
T 1sif_A           10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   81 (88)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBSGGGTCCTTCEEEEEC-
T ss_pred             eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            89999999999999999999999999999999999999999999999999875 8999999999999999886

>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I

Probab=99.74  E-value=3.8e-18  Score=128.63  Aligned_cols=72  Identities=26%  Similarity=0.407  Sum_probs=69.4

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus        13 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~i~l~~r   84 (88)
T 3dbh_I           13 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLR   84 (88)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-SBGGGGTCCTTCEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            79999999999999999999999999999999999999999999999999975 8999999999999999875

>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.74  E-value=1.2e-18  Score=137.31  Aligned_cols=73  Identities=22%  Similarity=0.361  Sum_probs=69.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc---------------ceEEEECCeeeCCCcCCccccCCCCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ---------------EIAIEFQGNALVDNKKTLKDYNIQDG   65 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~---------------~Q~Li~~Gk~L~d~~~tL~~~gI~~g   65 (280)
                      |+|+|++++|+.++|+|++++||++||+.|++.+++|+.               +|+|+|+|++|.||++||++|||++|
T Consensus         8 M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~g   87 (105)
T 1v2y_A            8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCCC
Confidence            899999999999999999999999999999999999884               57999999999866699999999999


Q ss_pred             CEEEEEEe
Q psy8018          66 DLVLLKRV   73 (280)
Q Consensus        66 d~l~l~~~   73 (280)
                      ++|+++.+
T Consensus        88 ~~l~lv~~   95 (105)
T 1v2y_A           88 DEVSFIKK   95 (105)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEeh
Confidence            99999986

>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A

Probab=99.74  E-value=9.3e-18  Score=128.88  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=70.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|++.+|+|++.|+|+|+|+.|.|+ .||++|||++|++|+|+.+
T Consensus         2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~i~l~~r   73 (96)
T 3k9o_B            2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   73 (96)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999876 8999999999999999986

>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}

Probab=99.74  E-value=2.7e-18  Score=130.48  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus         5 m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~~I~~g~~i~l~~~   76 (88)
T 2hj8_A            5 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLR   76 (88)
T ss_dssp             EEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTT-SBHHHHHCSTTCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEE
Confidence            79999999999999999999999999999999999999999999999999875 8999999999999999986

>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1

Probab=99.74  E-value=8.9e-18  Score=125.51  Aligned_cols=72  Identities=32%  Similarity=0.450  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|++.+++|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         4 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~l~l~~r   75 (85)
T 3mtn_B            4 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKWSTLFLLLR   75 (85)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTGGGTCCTTCEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999976 8999999999999999986

>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}

Probab=99.73  E-value=9.2e-18  Score=130.11  Aligned_cols=72  Identities=29%  Similarity=0.441  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus        23 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~i~l~~r   94 (98)
T 4hcn_B           23 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   94 (98)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-CBSGGGTCCTTEEEEEECB
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEe
Confidence            89999999999999999999999999999999999999999999999999875 8999999999999999875

>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=1.1e-17  Score=126.08  Aligned_cols=72  Identities=28%  Similarity=0.404  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~-~tL~~~~i~~g~~i~l~~~   79 (87)
T 1wh3_A            8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSS-SBHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCC-CCHHHCCCCCCCEEEEEEe
Confidence            79999999999999999999999999999999999999999999999999875 8999999999999999986

>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C

Probab=99.73  E-value=8.6e-18  Score=130.19  Aligned_cols=72  Identities=19%  Similarity=0.354  Sum_probs=69.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|+.+.|+|+++|+|+|+|++|.|+ +||++|||++||+|+|+.+
T Consensus        22 m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~-~tl~dy~i~~g~~I~l~~~   93 (97)
T 1wyw_B           22 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQE   93 (97)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTCEEEEEES
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCC-CCHHHCCCCCCCEEEEEEe
Confidence            78999999999999999999999999999999999999999999999999976 8999999999999999986

>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=9.3e-18  Score=124.44  Aligned_cols=72  Identities=28%  Similarity=0.391  Sum_probs=68.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|+++.||++||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus         8 m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~   79 (81)
T 2dzi_A            8 MQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADG-KRLSDYSIGPNSKLNLVVK   79 (81)
T ss_dssp             EEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTT-SBGGGGTCCSSBCCEEECC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            78999999999999999999999999999999999999999999999999875 8999999999999999874

>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.73  E-value=2e-17  Score=125.24  Aligned_cols=72  Identities=21%  Similarity=0.308  Sum_probs=68.8

Q ss_pred             CEEEEEcCCC-cEEEE-EeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDN-ECFLL-DVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g-~~~~l-eV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+| +.+++ +|+++.||.+||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus         8 m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~   81 (89)
T 1wy8_A            8 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLFDYDVGLNDIIQLLVR   81 (89)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSS-SBHHHHTCCTTCEEEEEEC
T ss_pred             EEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCC-CCHHHCCCCCCCEEEEEEe
Confidence            8999999999 79999 59999999999999999999999999999999999875 8999999999999999986

>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B

Probab=99.73  E-value=2.4e-17  Score=127.43  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|+++.||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus         1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~   72 (98)
T 1yx5_B            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   72 (98)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999875 8999999999999999986

>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.73  E-value=8.5e-18  Score=131.35  Aligned_cols=73  Identities=37%  Similarity=0.671  Sum_probs=68.4

Q ss_pred             CEEEEEcCCC----cEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDN----ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g----~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.++    +.++++|++++||++||++|++++|+|+++|+|+|+|++|.|+.+||++|||++|++|+|+.+
T Consensus         8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~   84 (102)
T 1v5o_A            8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEEC
Confidence            7999998654    799999999999999999999999999999999999999988757999999999999999886

>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=1.8e-17  Score=130.38  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=69.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|+|++.+|+.++++|+++.||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.++
T Consensus        24 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~g~ti~lv~~~   96 (106)
T 1ttn_A           24 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDK-MKFEELKIPKDYVVQVIVSQ   96 (106)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTT-SHHHHCCCSSSCEEEEECCC
T ss_pred             EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence            78999999999999999999999999999999999999999999999999875 89999999999999999863

>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1

Probab=99.71  E-value=3.4e-17  Score=127.67  Aligned_cols=74  Identities=20%  Similarity=0.276  Sum_probs=68.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA   76 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p   76 (280)
                      |+|+|++.+|+ ++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+..+
T Consensus        23 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~r~~~   96 (100)
T 1yqb_A           23 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIKRQH   96 (100)
T ss_dssp             EEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHCCCCCCCEEEEEEcCCC
Confidence            78999998886 79999999999999999999999999999999999999875 8999999999999999987433

>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.71  E-value=6.1e-17  Score=126.38  Aligned_cols=72  Identities=29%  Similarity=0.318  Sum_probs=68.4

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|+|++. |+.++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus        26 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gI~~g~~I~l~~~~   97 (101)
T 2klc_A           26 MKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQ-DTLSQHGIHDGLTVHLVIKT   97 (101)
T ss_dssp             EEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTT-CCTGGGTCCTTCEEEEEECC
T ss_pred             EEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHcCCCCCCEEEEEEcC
Confidence            78999998 88999999999999999999999999999999999999999875 89999999999999999863

>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A

Probab=99.54  E-value=7.5e-19  Score=129.14  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~r   72 (76)
T 3b1l_X            1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH-LTVQNCDLEQQSIVHIVQR   72 (76)
Confidence            99999999999999999999999999999999999999999999999999875 8999999999999999875

>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A

Probab=99.70  E-value=6e-17  Score=128.51  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=69.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus        36 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~gI~~gs~I~l~~r  107 (111)
T 3vdz_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEe
Confidence            79999999999999999999999999999999999999999999999999976 8999999999999999986

>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}

Probab=99.69  E-value=4.8e-17  Score=124.99  Aligned_cols=70  Identities=19%  Similarity=0.275  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++  |+.++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus        20 m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~y~I~~gstI~lv~r   89 (93)
T 2l7r_A           20 MQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDE-ATLGQCGVEALTTLEVAGR   89 (93)
T ss_dssp             CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTT-SBHHHHTCCSSCEEEEECC
T ss_pred             EEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEe
Confidence            8999998  89999999999999999999999999999999999999999875 8999999999999999875

>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=5.6e-17  Score=124.31  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             CEEEEEcCCCc--EEEEEeCCCccHHHHHHHHHHHh--CCCCcceEEEECCeeeCCCcCCcccc--CCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNE--CFLLDVSEDLELENFKAFCEVQS--GISAQEIAIEFQGNALVDNKKTLKDY--NIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~--~~~leV~~~~tV~~LK~~Ie~e~--gip~~~Q~Li~~Gk~L~d~~~tL~~~--gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|.  .++++|++++||.+||++|++++  |+|+++|+|+|+|++|.|+ +||++|  ||++|++|+|+.+
T Consensus         8 m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~-~tL~~~~~~i~~~~~i~lv~~   85 (93)
T 1wgd_A            8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH-QCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSS-SCHHHHSCSSSCSEEEEEECC
T ss_pred             EEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCc-CCHHHHhcCCCCCCEEEEEeC
Confidence            79999999888  67788889999999999999998  9999999999999999976 899999  9999999999876

>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.69  E-value=3.8e-17  Score=127.55  Aligned_cols=69  Identities=14%  Similarity=0.135  Sum_probs=63.5

Q ss_pred             EEEEcCC----CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           3 VTVTSLD----NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         3 ItV~~~~----g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |.|+..+    ++.++++|++++||++||++|++++|+|+++|+|+|+||+|+|+ +||++|||++|++|+++.
T Consensus        18 i~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~-~TL~~y~I~~gsti~vl~   90 (100)
T 1wju_A           18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLG-KTLEEQGVAHNVKAMVLE   90 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTT-SBHHHHTCCSSEEEEEEC
T ss_pred             EEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCC-CcHHHcCCCCCCEEEEEE
Confidence            5666666    78999999999999999999999999999999999999999986 999999999999996664

>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.69  E-value=6.7e-17  Score=128.92  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=65.8

Q ss_pred             EEEE-cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           3 VTVT-SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         3 ItV~-~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|+ .++|+.++++++++.||.+||+.++.++++|+++|+|+|+||+|+|+ .||++|||++|.+|||+.+.
T Consensus        18 vkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~-eTL~~~gIk~g~TIhLvi~s   89 (118)
T 2daf_A           18 VKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNN-ETLVQHGVKPQEIVQVEIFS   89 (118)
T ss_dssp             EEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSS-CCHHHHSCCSSCEEEEEEEE
T ss_pred             EEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCc-chHHHcCCCCCCEEEEEEec
Confidence            3444 66799999999999999999999999999999999999999999986 89999999999999999983

>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.68  E-value=4.2e-17  Score=125.52  Aligned_cols=72  Identities=22%  Similarity=0.341  Sum_probs=68.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|+|++. |+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus        18 m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~~   89 (96)
T 1wx8_A           18 IRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQRGILDGSTVHVVVRS   89 (96)
T ss_dssp             EEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTT-SCHHHHTCCTTEEEECCBCC
T ss_pred             EEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCc-CCHHHCCCCCCCEEEEEEeC
Confidence            78999998 89999999999999999999999999999999999999999875 89999999999999998863

>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1.5e-16  Score=128.99  Aligned_cols=72  Identities=28%  Similarity=0.315  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|+|++. |+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus        33 m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~dygI~~gstI~lv~~~  104 (125)
T 1j8c_A           33 IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQHGIHDGLTVHLVIKR  104 (125)
T ss_dssp             EEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTT-SCGGGTTCSSSEEEEEEEC-
T ss_pred             EEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEecc
Confidence            78999998 89999999999999999999999999999999999999999875 89999999999999999873

>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.68  E-value=1.5e-16  Score=121.62  Aligned_cols=72  Identities=28%  Similarity=0.347  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCC-----ccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSED-----LELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~-----~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+. .|+.++++|+++     .||.+||++|+..+|+|+++|+|+|+|+.|.|++++|++|||++|++|+|+.+
T Consensus         8 ~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~   84 (92)
T 1wxv_A            8 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   84 (92)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             EEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEec
Confidence            6899998 588999999996     99999999999999999999999999999998657999999999999999876

>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B

Probab=99.68  E-value=1.9e-16  Score=134.65  Aligned_cols=72  Identities=29%  Similarity=0.441  Sum_probs=70.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus         1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~y~I~~gstI~Lvlr   72 (169)
T 3l0w_B            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   72 (169)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCc-CcHHHcCCCCCCEEEEEEE
Confidence            99999999999999999999999999999999999999999999999999875 8999999999999999986

>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}

Probab=99.67  E-value=2.9e-16  Score=124.39  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|+++.||.+||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus        36 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gI~~gs~I~l~~r  107 (111)
T 2ojr_A           36 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR  107 (111)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSS-CBTTTTTCCTTCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            78999999999999999999999999999999999999999999999999875 8999999999999999986

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.67  E-value=2.6e-16  Score=131.40  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=69.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus        82 m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~i~~g~~l~l~~r  153 (159)
T 3rt3_B           82 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLR  153 (159)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCC-CCHHHcCCCCCCEEEEEEe
Confidence            78999999999999999999999999999999999999999999999999985 8999999999999999986

>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A

Probab=99.66  E-value=1.3e-16  Score=127.97  Aligned_cols=72  Identities=19%  Similarity=0.111  Sum_probs=66.9

Q ss_pred             CEEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCC-------CCCEEEEEE
Q psy8018           1 MKVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQ-------DGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~-------~gd~l~l~~   72 (280)
                      |+++|+...++ +++++|++++||++||++|+..+|||+++|+|+|+||+|.|+ +||++|||+       .+++|+|+.
T Consensus         1 M~mfl~ir~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~-~TLsdy~I~~~~a~~q~~stL~L~l   79 (118)
T 2fnj_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBHHHHTCCTTTSBTTBCEEEEEEE
T ss_pred             CcEEEEEecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCC-CCHHHcCcccccccCCCCCEEEEEe
Confidence            78888877665 589999999999999999999999999999999999999876 999999999       799999998


Q ss_pred             e
Q psy8018          73 V   73 (280)
Q Consensus        73 ~   73 (280)
                      +
T Consensus        80 r   80 (118)
T 2fnj_B           80 R   80 (118)
T ss_dssp             B
T ss_pred             c
Confidence            7

>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}

Probab=99.66  E-value=3.9e-16  Score=124.49  Aligned_cols=72  Identities=25%  Similarity=0.394  Sum_probs=69.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .+|+|++++|+.++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus        10 ~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~~   81 (114)
T 2kdi_A           10 FQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG-RTLSDYNIQRESTLHLVLR   81 (114)
T ss_dssp             CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCSSCEEEEEEC
T ss_pred             EEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEE
Confidence            47999999999999999999999999999999999999999999999999875 8999999999999999986

>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}

Probab=99.66  E-value=1e-16  Score=125.02  Aligned_cols=70  Identities=13%  Similarity=0.190  Sum_probs=63.7

Q ss_pred             CEEEEEcCCCc--EEEEEeCCCccHHHHHHHHHHH-hCCC-CcceEEEECCeeeCCCcCCcccc--CCCCCCEEEEE
Q psy8018           1 MKVTVTSLDNE--CFLLDVSEDLELENFKAFCEVQ-SGIS-AQEIAIEFQGNALVDNKKTLKDY--NIQDGDLVLLK   71 (280)
Q Consensus         1 M~ItV~~~~g~--~~~leV~~~~tV~~LK~~Ie~e-~gip-~~~Q~Li~~Gk~L~d~~~tL~~~--gI~~gd~l~l~   71 (280)
                      |+|+|++++|+  .++++|++++||.+||++|+++ .|+| +++|||+|+||+|+|+ +||++|  ||++|++|+|+
T Consensus        24 m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~-~tL~~y~~~I~~~~tihLv   99 (99)
T 2kdb_A           24 VTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDH-LQLKDILRKQDEYHMVHLV   99 (99)
T ss_dssp             EEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTT-SBTHHHHTTTCSEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCC-CCHHHHhcCCCCCCEEEeC
Confidence            78999999988  6799999999999999999996 4666 5999999999999976 899999  99999999984

>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A

Probab=99.66  E-value=3.8e-16  Score=122.85  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=66.5

Q ss_pred             CEEEEEcCC--CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCC-CCCCEEEEEEe
Q psy8018           1 MKVTVTSLD--NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNI-QDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~--g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI-~~gd~l~l~~~   73 (280)
                      |+|||++..  +..++++|+|++||.+||++|++++|||+++|||+|+|+.+.|+ +||++||| ++|++++|...
T Consensus        25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~-~TL~~ygI~~~G~t~hL~l~   99 (105)
T 4dbg_A           25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQ-ETLHSHGVRQNGDSAYLYLL   99 (105)
T ss_dssp             EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTT-CBTGGGTCCSTTCEEEEEEC
T ss_pred             EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCc-CcHHHcCCCCCCCEEEEEEE
Confidence            689999876  47899999999999999999999999999999999999988775 99999999 59999999875

>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.66  E-value=2.6e-16  Score=123.53  Aligned_cols=71  Identities=21%  Similarity=0.291  Sum_probs=67.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+..+|+ +.++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus        18 m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~   88 (106)
T 1wx7_A           18 IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIK   88 (106)
T ss_dssp             EEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTT-SCHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHcCCCCCCEEEEEEc
Confidence            78999998886 79999999999999999999999999999999999999875 8999999999999999987

>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A

Probab=99.66  E-value=3.7e-16  Score=130.47  Aligned_cols=76  Identities=24%  Similarity=0.297  Sum_probs=71.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE-E-CCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE-F-QGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR   77 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li-~-~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~   77 (280)
                      |+|+|++.+|+.++++|++++||++||++|+..+|+|+++|+|+ | +|++|.|+ +||++|||++|++|+|+.+..|+
T Consensus         3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~-~tL~~y~i~~~~~l~l~~~~~~~   80 (159)
T 3rt3_B            3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDR-VPLASQGLGPGSTVLLVVDKSDE   80 (159)
T ss_dssp             CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTT-SCGGGGTCCTTCEEEEEECCCCC
T ss_pred             eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCC-CCHHHcCCCCCCEEEEEccCCCC
Confidence            89999999999999999999999999999999999999999999 9 89999875 99999999999999999863343

>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A

Probab=99.66  E-value=1.7e-16  Score=121.16  Aligned_cols=71  Identities=13%  Similarity=0.275  Sum_probs=67.4

Q ss_pred             CEEEEEcCCCcEEEE-EeCCCccHHHHHHHHHHHhCCCCcceEEE---ECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLL-DVSEDLELENFKAFCEVQSGISAQEIAIE---FQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~l-eV~~~~tV~~LK~~Ie~e~gip~~~Q~Li---~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+. .|+.+++ +|+++.||.+||++|++.+|+|+++|+|+   |+|++|.|+ .+|++|||++|++|+|+..
T Consensus         8 m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~-~~L~~~~i~~g~~l~l~~~   82 (90)
T 1v5t_A            8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-VKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTT-SBHHHHTCCTTEEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCC-CCHHHcCCCCCCEEEEEec
Confidence            7899996 7899999 99999999999999999999999999999   999999875 8999999999999999875

>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.66  E-value=3.7e-16  Score=125.15  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=65.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHH------HhCC--CCcceEEEECCeeeCCCcCCccccCCCCCC--EEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEV------QSGI--SAQEIAIEFQGNALVDNKKTLKDYNIQDGD--LVLL   70 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~------e~gi--p~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd--~l~l   70 (280)
                      |+|+|++++|++++++|++++||++||++|++      .+|+  |+++|+|+|.||+|.|+ +||++|||+.++  +|||
T Consensus        17 m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~-~TL~~y~I~~~~~~tlhL   95 (116)
T 1wgh_A           17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMHL   95 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSS-CBTTTTTCCSSCEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCC-CcHHHcCCCCCCceEEEE
Confidence            78999999999999999999999999999999      5575  69999999999999986 999999998774  6788


Q ss_pred             EEe
Q psy8018          71 KRV   73 (280)
Q Consensus        71 ~~~   73 (280)
                      +.+
T Consensus        96 vlr   98 (116)
T 1wgh_A           96 VAR   98 (116)
T ss_dssp             EEC
T ss_pred             Ecc
Confidence            876

>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}

Probab=99.66  E-value=2.1e-16  Score=128.15  Aligned_cols=72  Identities=13%  Similarity=0.108  Sum_probs=66.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHH------HhCCC--CcceEEEECCeeeCCCcCCccccCCCCCC--EEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEV------QSGIS--AQEIAIEFQGNALVDNKKTLKDYNIQDGD--LVLL   70 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~------e~gip--~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd--~l~l   70 (280)
                      |+|+|++++|++++++|+|++||++||++|++      .+|+|  +++|+|+|+||+|+|+ +||++|||++|+  +|+|
T Consensus        18 m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~-~TL~~y~I~~~~~~tlhl   96 (125)
T 2gow_A           18 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMHL   96 (125)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESS-CBTGGGCCCTTSEEEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCC-CcHHHcCCCCCCceEEEE
Confidence            68999999999999999999999999999998      67884  8999999999999976 899999999888  6788


Q ss_pred             EEe
Q psy8018          71 KRV   73 (280)
Q Consensus        71 ~~~   73 (280)
                      +.+
T Consensus        97 v~r   99 (125)
T 2gow_A           97 VAR   99 (125)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            776

>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.65  E-value=4.2e-16  Score=122.75  Aligned_cols=75  Identities=24%  Similarity=0.327  Sum_probs=68.2

Q ss_pred             CEEEEEcCCC---cEEEEEeCC---------CccHHHHHHHHHHHh--CCCCcc-eEEEECCeeeCCCcCCccccCCCCC
Q psy8018           1 MKVTVTSLDN---ECFLLDVSE---------DLELENFKAFCEVQS--GISAQE-IAIEFQGNALVDNKKTLKDYNIQDG   65 (280)
Q Consensus         1 M~ItV~~~~g---~~~~leV~~---------~~tV~~LK~~Ie~e~--gip~~~-Q~Li~~Gk~L~d~~~tL~~~gI~~g   65 (280)
                      |+|+|++.++   ..++++|++         ++||.+||++|+..+  |+|+++ |+|+|+|+.|.|+ +||++|||++|
T Consensus        13 ~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~-~tL~~y~i~~g   91 (107)
T 1x1m_A           13 WHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDD-QTLDFYGIQPG   91 (107)
T ss_dssp             CCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTT-CBHHHHTCCTT
T ss_pred             eEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCC-CcHHHcCCCCC
Confidence            7899999988   899999554         599999999999999  999999 9999999999876 89999999999


Q ss_pred             CEEEEEEeccC
Q psy8018          66 DLVLLKRVQVA   76 (280)
Q Consensus        66 d~l~l~~~~~p   76 (280)
                      ++|+|+.+..|
T Consensus        92 ~~i~lv~~~~~  102 (107)
T 1x1m_A           92 STVHVLRKSWS  102 (107)
T ss_dssp             CEEEEEESSCC
T ss_pred             CEEEEEeCCCC
Confidence            99999987433

>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*

Probab=99.64  E-value=4.2e-16  Score=124.76  Aligned_cols=72  Identities=19%  Similarity=0.111  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCC-------CCEEEEEE
Q psy8018           1 MKVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQD-------GDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~-------gd~l~l~~   72 (280)
                      |.++|+.-.++ ++.++|++++||.+||++|+..+|||+++|+|+|+|++|.|+ +||++|||++       +++|+|+.
T Consensus         1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~-kTL~dy~I~~~ta~~q~~atl~Lvl   79 (118)
T 4ajy_B            1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLAF   79 (118)
T ss_dssp             CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred             CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCc-CCHHHcCCCcCcccCCCCCEEEEEE
Confidence            78899876655 788999999999999999999999999999999999999875 9999999999       99999999


Q ss_pred             e
Q psy8018          73 V   73 (280)
Q Consensus        73 ~   73 (280)
                      |
T Consensus        80 r   80 (118)
T 4ajy_B           80 R   80 (118)
T ss_dssp             C
T ss_pred             e
Confidence            7

>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}

Probab=99.64  E-value=1e-16  Score=125.17  Aligned_cols=71  Identities=24%  Similarity=0.456  Sum_probs=66.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++ +|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus        29 i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~gI~~g~tI~lv~~   99 (101)
T 3m63_B           29 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKS   99 (101)
T ss_dssp             CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTT-SBTTTTTCCTTEEEEECCC
T ss_pred             EEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCc-CcHHHCCCCCCCEEEEEeC
Confidence            4577887 899999999999999999999999999999999999999999975 8999999999999999864

>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.64  E-value=2.8e-16  Score=124.42  Aligned_cols=72  Identities=19%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             CEEEEEcC---CCcEEEEEeCC-CccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSL---DNECFLLDVSE-DLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~---~g~~~~leV~~-~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+++   +|+.++++|++ ++||++||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus        28 i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~-~tL~~y~I~~g~~l~l~~r  103 (111)
T 1we6_A           28 ATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN-MSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             EEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTT-SBTTTTTCSSSCEEEEECS
T ss_pred             EEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC-CcHHHCCCCCCCEEEEEEE
Confidence            68999988   89999999998 9999999999999999999999999999999875 8999999999999999875

>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.64  E-value=4.8e-16  Score=119.42  Aligned_cols=70  Identities=19%  Similarity=0.234  Sum_probs=66.4

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.+.++|++++||.+||++|+..+   +++|+|+|+|+.|.|+++||++|||++|++|+|+.+
T Consensus         8 m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~   77 (95)
T 1wia_A            8 INVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS   77 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEEC
Confidence            7899999999999999999999999999999987   899999999999987658999999999999999986

>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}

Probab=99.63  E-value=4.1e-16  Score=134.89  Aligned_cols=72  Identities=31%  Similarity=0.412  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|++.+|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.+
T Consensus       106 MqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~-~tL~dygI~~gstI~Lvlr  177 (189)
T 3q3f_A          106 GQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR  177 (189)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-CBGGGGTCCTTCEEEECCC
T ss_pred             eeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCC-CCHHHCCCCCCCEEEEEEE
Confidence            89999999999999999999999999999999999999999999999999985 8999999999999999885

>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p

Probab=99.63  E-value=1.8e-17  Score=134.59  Aligned_cols=76  Identities=28%  Similarity=0.414  Sum_probs=0.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART   78 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~   78 (280)
                      |+|+|++.+|+.++++|++++||++||+.|++.+|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.+ .+|.
T Consensus         1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~~I~~gsti~l~~r-l~GG   76 (128)
T 3u5e_m            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR-LRGG   76 (128)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCC-CchhhhccCCCCEEEEEEE-cCCC
Confidence            89999999999999999999999999999999999999999999999999875 8999999999999999986 4444

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.63  E-value=9.6e-16  Score=129.85  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=69.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|+.+
T Consensus        21 m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~-~tL~~~~i~~~~~l~l~~~   92 (172)
T 3u30_A           21 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   92 (172)
T ss_dssp             EEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccccc-CCHhHcCCcccceeeeeec
Confidence            89999999999999999999999999999999999999999999999999875 8999999999999999985

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.63  E-value=1.5e-15  Score=124.88  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||++||+.|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus         1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~l~l~~~   72 (152)
T 3b08_A            1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCc-ccHHHhccCCCCeeEEEee
Confidence            99999999999999999999999999999999999999999999999999875 8999999999999999986

>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.63  E-value=1.1e-15  Score=115.53  Aligned_cols=70  Identities=20%  Similarity=0.332  Sum_probs=64.5

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +++++.+|+.++++|++++||++||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+
T Consensus        14 ~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~l~l~~s   83 (85)
T 2kd0_A           14 KLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVET-STLKQSDVGSGAKLMLMAS   83 (85)
T ss_dssp             EEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTT-CBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCc-CCHHHCCCCCCCEEEEEEe
Confidence            345567899999999999999999999999999999999999999999875 8999999999999999763

>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.62  E-value=8.7e-16  Score=124.47  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=65.2

Q ss_pred             CEEEEEcCCCcEE-EEEeCCCccHHHHHHHH-----HHHhCCCC--cceEEEECCeeeCCCcCCccccCCCCC------C
Q psy8018           1 MKVTVTSLDNECF-LLDVSEDLELENFKAFC-----EVQSGISA--QEIAIEFQGNALVDNKKTLKDYNIQDG------D   66 (280)
Q Consensus         1 M~ItV~~~~g~~~-~leV~~~~tV~~LK~~I-----e~e~gip~--~~Q~Li~~Gk~L~d~~~tL~~~gI~~g------d   66 (280)
                      |+|+|++++|+.+ +++++|++||++||++|     ++..|+|+  ++|+|+|+||+|.|+ +||++|+|++|      .
T Consensus        17 ~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~-~TLsdy~I~~~~~~~~v~   95 (126)
T 1se9_A           17 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENS-KTVKDYRSPVSNLAGAVT   95 (126)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTT-SBGGGGSCCTTSCTTCCE
T ss_pred             EEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCC-CcHHHcCCCcCCccCCcE
Confidence            7899999999888 79999999999999999     45668986  899999999999986 99999999999      5


Q ss_pred             EEEEEEe
Q psy8018          67 LVLLKRV   73 (280)
Q Consensus        67 ~l~l~~~   73 (280)
                      +++|+.+
T Consensus        96 tmhlVlr  102 (126)
T 1se9_A           96 TMHVIIQ  102 (126)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            7888885

>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.62  E-value=4.4e-16  Score=120.50  Aligned_cols=70  Identities=23%  Similarity=0.289  Sum_probs=65.7

Q ss_pred             CEEEEEcCCCcEE-EEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECF-LLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~-~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+. .|+.+ +++|+++.||.+||++|++.+|+|+++|+|+|+|++|.|+  +|++|||++|++|+|+.+
T Consensus         8 m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~--tL~~~~I~~g~~i~l~~~   78 (96)
T 1wgg_A            8 YSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             EEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS--CCCSCCCCSSCEEECCCC
T ss_pred             EEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC--CHHHCCCCCCCEEEEEec
Confidence            6899995 78999 6999999999999999999999999999999999999874  999999999999999875

>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B

Probab=99.60  E-value=3.6e-15  Score=122.59  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=69.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|+++.||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|..+
T Consensus        77 ~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r  148 (152)
T 3b08_A           77 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR  148 (152)
T ss_dssp             EEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             cceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEe
Confidence            68999999999999999999999999999999999999999999999999875 8999999999999999986

>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f

Probab=99.60  E-value=7.1e-17  Score=135.18  Aligned_cols=72  Identities=29%  Similarity=0.441  Sum_probs=0.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++|+.++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.+
T Consensus         1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~dygI~~gstL~Lvlr   72 (152)
T 3u5c_f            1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   72 (152)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcccc-CcHHHcCCCCCCEEEEEee
Confidence            89999999999999999999999999999999999999999999999999875 8999999999999999986

>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.60  E-value=6e-16  Score=119.42  Aligned_cols=70  Identities=13%  Similarity=0.230  Sum_probs=64.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+. +|+.++++|+++.||.+||++|+..+|+|+++|+|+|+|++| |+ .+|++|||++|++|+|+.+
T Consensus        18 ~~i~Vk~-~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd-~tL~~~~i~~g~~i~lv~~   87 (95)
T 1v86_A           18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-ED-KTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SS-SBHHHHCCCTTEEEEECCS
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-Cc-CcHHHCCCCCCCEEEEEec
Confidence            5788884 688999999999999999999999999999999999999999 55 5999999999999999875

>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A

Probab=99.58  E-value=5.3e-15  Score=117.84  Aligned_cols=71  Identities=15%  Similarity=0.302  Sum_probs=65.5

Q ss_pred             EEEEEcC----------CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTSL----------DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~~----------~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      +|+|+.+          +|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+
T Consensus        27 ~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~-~tL~~y~i~~g~~i~lv  105 (115)
T 1we7_A           27 SIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMASGAVIHLA  105 (115)
T ss_dssp             EEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTT-SBHHHHTCCSSCEEEEE
T ss_pred             EEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCC-CCHHHCCCCCCCEEEEE
Confidence            5667754          478999999999999999999999999999999999999999875 89999999999999999


Q ss_pred             Ee
Q psy8018          72 RV   73 (280)
Q Consensus        72 ~~   73 (280)
                      .+
T Consensus       106 ~r  107 (115)
T 1we7_A          106 LK  107 (115)
T ss_dssp             EC
T ss_pred             EE
Confidence            86

>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}

Probab=99.58  E-value=3.6e-15  Score=126.27  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus        97 ~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~y~i~~g~tl~l~~r  168 (172)
T 3u30_A           97 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR  168 (172)
T ss_dssp             EEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-SBSGGGTCCTTCEEEECC-
T ss_pred             ccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCC-CcHHHhCCCCCCEEEEEEe
Confidence            67899999999999999999999999999999999999999999999999875 8999999999999999875

>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.7e-15  Score=115.50  Aligned_cols=69  Identities=12%  Similarity=0.209  Sum_probs=63.0

Q ss_pred             CEEEEEcCCCcEE--EE-EeCCCccHHHHHHHHHHH-hCCCCcceEEEEC--CeeeCCCcCCccccCCCCCCEEEE
Q psy8018           1 MKVTVTSLDNECF--LL-DVSEDLELENFKAFCEVQ-SGISAQEIAIEFQ--GNALVDNKKTLKDYNIQDGDLVLL   70 (280)
Q Consensus         1 M~ItV~~~~g~~~--~l-eV~~~~tV~~LK~~Ie~e-~gip~~~Q~Li~~--Gk~L~d~~~tL~~~gI~~gd~l~l   70 (280)
                      |+|+|++..|+.+  ++ +|+|+.||++||++|++. .|+||++|+|+|.  |++|.|+ +||++|||++|++|++
T Consensus        11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~-~tL~~y~i~~~stl~~   85 (88)
T 2dzj_A           11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDE-DVLQKLPVGTTATLYF   85 (88)
T ss_dssp             EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTT-CBTTTSSCCSEEEEEE
T ss_pred             EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCC-CCHHHcCCCCCCEEEE
Confidence            8999999887664  68 999999999999999995 8999999999976  9999875 8999999999999887

>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}

Probab=99.57  E-value=6.6e-15  Score=113.88  Aligned_cols=71  Identities=23%  Similarity=0.320  Sum_probs=61.6

Q ss_pred             EEEEEcCCC--cEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC--Ce---eeCCCcCCccccCCCCCCEEEEEE
Q psy8018           2 KVTVTSLDN--ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ--GN---ALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         2 ~ItV~~~~g--~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~--Gk---~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      .|+|+..++  ..++++|++++||++||++|+..+|||+++|+|+|.  |+   .|.+|++||++|||++|++|+|+-
T Consensus        17 ~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlvD   94 (95)
T 2kjr_A           17 KVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVVD   94 (95)
T ss_dssp             EEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEEE
T ss_pred             EEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEEC
Confidence            567776555  488999999999999999999999999999999997  56   464455999999999999999974

>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}

Probab=99.54  E-value=1.4e-14  Score=112.41  Aligned_cols=72  Identities=18%  Similarity=0.200  Sum_probs=61.4

Q ss_pred             EEEEEcCC--CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC---ee---eCCCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLD--NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG---NA---LVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~--g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G---k~---L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .|+|+...  +..++++|++++||++||++|+..+||||++|+|+|+|   +.   |.+|++||++|||++|++|+|+..
T Consensus        16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~   95 (97)
T 2kj6_A           16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL   95 (97)
T ss_dssp             EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred             EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence            46676544  35789999999999999999999999999999999988   33   434569999999999999999863

>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}

Probab=99.52  E-value=2.1e-14  Score=109.10  Aligned_cols=71  Identities=13%  Similarity=0.131  Sum_probs=62.2

Q ss_pred             EEEEE--cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC-------CeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           2 KVTVT--SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ-------GNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         2 ~ItV~--~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~-------Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+|+  .++...+...+++++||++||++|+..+||||++|+|+|.       |+.|.|+ +||++|||++|++|||+-
T Consensus         4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~-~tL~~Y~i~~g~~ihlvd   82 (86)
T 4b6w_A            4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAND-KQLGYYQCRDEFVIHVVD   82 (86)
T ss_dssp             EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTT-SBGGGGTCCTTCEEEEEE
T ss_pred             EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCC-CCHHHCCCCCCCEEEEEe
Confidence            35555  3456778899999999999999999999999999999974       7888875 999999999999999987


Q ss_pred             e
Q psy8018          73 V   73 (280)
Q Consensus        73 ~   73 (280)
                      +
T Consensus        83 ~   83 (86)
T 4b6w_A           83 L   83 (86)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=113.80  Aligned_cols=71  Identities=11%  Similarity=0.151  Sum_probs=64.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE--CCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF--QGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~--~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |.++++..+|+.++++|++++||++||++|++.+||||++|+|+|  .|+ |.|+ .+|++|||++|++|+|+..
T Consensus         9 m~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~-~tLs~~~I~~gstL~lvl~   81 (100)
T 2dzm_A            9 MLDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDS-TVLKSLHLPKNNSLYVLTP   81 (100)
T ss_dssp             EEEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTT-SBHHHHCCCSEEEEEECCS
T ss_pred             eEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCc-CCHHHcCCCCCCEEEEEec
Confidence            667777889999999999999999999999999999999999986  566 8765 8999999999999999765

>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*

Probab=99.51  E-value=3.2e-14  Score=131.29  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=68.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++|+.++++|++++||++||++|++.+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.|
T Consensus       234 MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~-~TLsdygI~~gstL~LvlR  305 (307)
T 3ai5_A          234 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR  305 (307)
T ss_dssp             EEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTGGGTCCTTCEEEEEC-
T ss_pred             EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCC-CCHHHcCCCCCCEEEEEEe
Confidence            78999999999999999999999999999999999999999999999999875 8999999999999999864

>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A

Probab=99.51  E-value=1.9e-14  Score=135.97  Aligned_cols=72  Identities=18%  Similarity=0.405  Sum_probs=66.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHH---HhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEE-EEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEV---QSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLV-LLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~---e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l-~l~~~   73 (280)
                      |+|+||+.+|+.++|+|++++||.+||++|+.   .+|||+++|+|+|+||+|.|+ +||++|||++|++| +|+.|
T Consensus         8 M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~-~tL~dygI~~gstIv~lv~k   83 (368)
T 1oqy_A            8 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMVTK   83 (368)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSS-SBTTTTCCCTTSCEEEEEEC
T ss_pred             EEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCc-CCHHHcCCCCCCEEEEEEec
Confidence            89999999999999999999999999999999   567999999999999999976 89999999999999 55554

>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1

Probab=99.50  E-value=1.5e-14  Score=113.90  Aligned_cols=72  Identities=19%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             CEEEEEcCCCcEEEEEeC-CCccHHHHHHHHHHHhCCCCcceEEEECCe-----------ee---CCCcCCccccCCCCC
Q psy8018           1 MKVTVTSLDNECFLLDVS-EDLELENFKAFCEVQSGISAQEIAIEFQGN-----------AL---VDNKKTLKDYNIQDG   65 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~-~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk-----------~L---~d~~~tL~~~gI~~g   65 (280)
                      |+|+|++.+|.. .++|+ +++||.+||++|+..+|||+++|+|+|+|+           .|   .++++||++|||++|
T Consensus         8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G   86 (107)
T 1wf9_A            8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHG   86 (107)
T ss_dssp             EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTT
T ss_pred             EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCC
Confidence            889999999966 79999 999999999999999999999999999998           44   345589999999999


Q ss_pred             CEEEEEEe
Q psy8018          66 DLVLLKRV   73 (280)
Q Consensus        66 d~l~l~~~   73 (280)
                      ++|+|...
T Consensus        87 ~~L~l~~~   94 (107)
T 1wf9_A           87 SMVYLAYE   94 (107)
T ss_dssp             CEEECCCS
T ss_pred             CEEEEEeC
Confidence            99999875

>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.47  E-value=7.4e-14  Score=107.50  Aligned_cols=72  Identities=24%  Similarity=0.244  Sum_probs=61.1

Q ss_pred             EEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC---ee---eCCCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG---NA---LVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G---k~---L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .|+|+..+.. .++++|++++||++||++|+..+|||+++|+|+|.|   +.   |.+|++||++|||++|++|+|...
T Consensus         9 ~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~   87 (95)
T 1v6e_A            9 MVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence            4666665443 689999999999999999999999999999999986   54   433459999999999999999864

>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9

Probab=99.46  E-value=4.6e-15  Score=127.97  Aligned_cols=67  Identities=15%  Similarity=0.201  Sum_probs=0.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++|++++|+|++++||++||++|+..+|||+++|+|+|+|++|.|+ .||+     ++++|+|+.+
T Consensus         1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~-~TLs-----~~STLhLvlR   67 (189)
T 2xzm_9            1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNT-ELVT-----DDVTYYLSLK   67 (189)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCC-Cccc-----CCCEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999985 8998     9999999876

>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}

Probab=99.44  E-value=9.5e-14  Score=104.92  Aligned_cols=72  Identities=24%  Similarity=0.322  Sum_probs=64.5

Q ss_pred             CEEEEEcCCCcEEEEE-eCCCccHHHHHHHHHHHhCCCCcceEEEEC--CeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLD-VSEDLELENFKAFCEVQSGISAQEIAIEFQ--GNALV--DNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~le-V~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~--Gk~L~--d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|+. .++ ++++.||.+||+.|++++|||+++|+|+|+  +|+|.  |+++||++|||++|++|+|...
T Consensus         1 m~i~vr~~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~   77 (86)
T 2kzr_A            1 WRVRCKAKGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED   77 (86)
T ss_dssp             CCEEEEETTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred             CEEEEEcCCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence            899999999965 488 999999999999999999999999999997  48874  3568999999999999999764

>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1

Probab=99.41  E-value=7.2e-13  Score=102.16  Aligned_cols=76  Identities=16%  Similarity=0.297  Sum_probs=70.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR   77 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~   77 (280)
                      |+|+|++.+|+.+.+.|.++++++.|++.++++.|+|+++|+|+|+|+.|.++ +|+++|++++||+|+++.++..|
T Consensus         8 i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~~~GG   83 (94)
T 2io1_B            8 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQTGG   83 (94)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTCEEEEEECCEES
T ss_pred             EEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEeccCC
Confidence            57888888999999999999999999999999999999999999999999876 89999999999999999875544

>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1

Probab=99.41  E-value=4.5e-13  Score=107.86  Aligned_cols=72  Identities=21%  Similarity=0.321  Sum_probs=61.5

Q ss_pred             EEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC---ee---eCCCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG---NA---LVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G---k~---L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .|+|+..++. .++++|++++||++||++|+..+|||+++|+|+|.|   +.   |.+|++||++|||++|++|||...
T Consensus         8 ~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~   86 (122)
T 1t0y_A            8 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   86 (122)
T ss_dssp             EEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeC
Confidence            4667665443 688999999999999999999999999999999977   53   434459999999999999999985

>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1

Probab=99.36  E-value=3.4e-12  Score=97.82  Aligned_cols=77  Identities=16%  Similarity=0.293  Sum_probs=70.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART   78 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~   78 (280)
                      |+|.|++.+|+.+.+.|.++++++.|+...+++.|+|+++++|+|+|+.|.++ +|.++|++++||+|.+...+..|.
T Consensus         6 i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~q~gg~   82 (91)
T 2io0_B            6 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQTGGV   82 (91)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECCCCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEeccCCc
Confidence            46778888999999999999999999999999999999999999999999876 899999999999999998765543

>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B

Probab=99.35  E-value=4.2e-12  Score=92.88  Aligned_cols=70  Identities=16%  Similarity=0.311  Sum_probs=66.4

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |+|.|++.+|+.+.+.|.++++++.|+...+++.|+|+++++|+|+|+.|.++ +|.++||+++||+|++.
T Consensus         2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~~l~medgD~Idv~   71 (72)
T 1wm3_A            2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTT-CCTTTTTCCTTEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEE
Confidence            57888899999999999999999999999999999999999999999999876 89999999999999985

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.33  E-value=1.2e-12  Score=121.72  Aligned_cols=71  Identities=10%  Similarity=0.191  Sum_probs=64.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE---ECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE---FQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li---~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |.|+|+. +|+.++++|++++||++||++|++.+|||+++|+|+   |+|++|.|+ .||++|||++|++|+|+..
T Consensus         6 i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~-~~L~~~~ik~g~~l~L~gs   79 (320)
T 3shq_A            6 VVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADN-VKISALELKPNFKLMMVGS   79 (320)
T ss_dssp             EEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTT-SBTTSSCCC--CEEEEECC
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCcc-ccHHHcCCCCCCEEEEEcc
Confidence            4677885 799999999999999999999999999999999999   899999986 8999999999999999875

>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*

Probab=99.28  E-value=9.1e-12  Score=101.60  Aligned_cols=111  Identities=23%  Similarity=0.293  Sum_probs=79.1

Q ss_pred             eeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEE
Q psy8018         147 VIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSV  226 (280)
Q Consensus       147 ~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~V  226 (280)
                      ..+.++.++|||+++.|||||||+.|+++...+.   +.   .+  .....|+|+...........|+|++......+.|
T Consensus        20 ~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p---~~---~~--p~~I~GiGG~i~vr~~~~i~IeI~g~~~~~~~lV   91 (132)
T 3slz_A           20 PPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP---LS---DK--SAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLH   91 (132)
T ss_dssp             CCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS---EE---EE--EEEEECSSCEEEEEEECCEEEEETTEEEEECCEE
T ss_pred             cCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC---CC---CC--ceEEEccCCEEEEEEEeeeEEEECCeeecceEEE
Confidence            3567899999999999999999999999975443   11   11  2355788875543333345899999877777766


Q ss_pred             ecCCCcccccchhhhhcceEEEEecccE-EEeeeeecCCCccce
Q psy8018         227 LEDQPMDMLLGLDMLKRHQVQIAIENDF-LTTSFSVLEDQPMDM  269 (280)
Q Consensus       227 l~~~~~d~ILG~D~L~~~~~~ID~~~~~-L~i~~~~~~~~~~~~  269 (280)
                      +.. ...-|||+|||.+++|.|||...- ..+..   .++|+.+
T Consensus        92 ~~~-tPvnLLGrd~Ltqlg~tL~fp~~g~~~~~~---~~~~~~~  131 (132)
T 3slz_A           92 VPD-CPYPLLGRDLLTKLKAQIHFEGSGAQVVGP---MGQPLQV  131 (132)
T ss_dssp             CTT-SSSCEECHHHHHHHTCEEEEETTEEEEECT---TSCBSCC
T ss_pred             ECC-CCccEECHhhHhhCCcEEECCCCCceeecc---CCceeee
Confidence            544 345889999999999999999444 33222   2556554

>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A

Probab=99.28  E-value=1.9e-11  Score=91.10  Aligned_cols=70  Identities=20%  Similarity=0.379  Sum_probs=65.4

Q ss_pred             CEEEEEcCCCc-EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           1 MKVTVTSLDNE-CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         1 M~ItV~~~~g~-~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |+|.|++.+|+ .+.+.|.++++++.|+...+++.|+|+++++|+|+|+.|.++ +|.++|++++||+|++.
T Consensus         8 i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~~l~medgD~Idv~   78 (79)
T 3a4r_A            8 LRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGK-ELPADLGLESGDLIEVW   78 (79)
T ss_dssp             EEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSC-CCHHHHTCCTTCEEEEE
T ss_pred             EEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEe
Confidence            56888888995 899999999999999999999999999999999999999876 89999999999999975

>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A

Probab=99.27  E-value=1.8e-11  Score=94.08  Aligned_cols=73  Identities=16%  Similarity=0.311  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|.|++.+|+.+.+.|.+++++..|+..+++..|+|+++++|+|+|+.|.++ .|+++|++.+||+|++..++
T Consensus        18 i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~dl~medgD~Idv~~~q   90 (93)
T 2d07_B           18 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ   90 (93)
T ss_dssp             EEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeec
Confidence            46777888899999999999999999999999999999999999999999876 89999999999999998864

>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1

Probab=99.27  E-value=1.3e-11  Score=95.11  Aligned_cols=72  Identities=11%  Similarity=0.332  Sum_probs=62.7

Q ss_pred             EEEEEc---CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC-------eeeCCCcCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTS---LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG-------NALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~---~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G-------k~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      +|+|+.   .+|+.+...+++++||.+||.+|+..+|+|+..|+|.|.+       ..|.||.++|+.|||.+|++|+|.
T Consensus        11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~   90 (97)
T 1wjn_A           11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence            456664   4688999999999999999999999999999999999863       236677799999999999999998


Q ss_pred             Ee
Q psy8018          72 RV   73 (280)
Q Consensus        72 ~~   73 (280)
                      ..
T Consensus        91 d~   92 (97)
T 1wjn_A           91 WS   92 (97)
T ss_dssp             CC
T ss_pred             ec
Confidence            74

>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1

Probab=99.24  E-value=1.6e-11  Score=96.37  Aligned_cols=77  Identities=16%  Similarity=0.296  Sum_probs=70.4

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART   78 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~   78 (280)
                      |+|.|++.+|+.+.+.|.+++++..|+..++++.|+|+++++|+|+|+.|.++ +|+++|++++||+|++..++..|.
T Consensus        25 I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~q~GG~  101 (104)
T 1wz0_A           25 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQTSGP  101 (104)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTT-SCTTTTTCCTTEEEEECCCCCCCS
T ss_pred             EEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEeccCCC
Confidence            46788888999999999999999999999999999999999999999999876 899999999999999988755443

>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*

Probab=99.22  E-value=3.2e-11  Score=94.64  Aligned_cols=97  Identities=20%  Similarity=0.221  Sum_probs=76.4

Q ss_pred             eEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccc-cccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEE
Q psy8018         148 IMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRL-IDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSV  226 (280)
Q Consensus       148 ~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~-~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~V  226 (280)
                      .+.++.++|||+++.||+||||..|+++.+.+.+++++.. -..   .+..|+|+..... ...+++++++.....++.|
T Consensus         7 ~RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~p---~~i~GiGG~i~v~-~~~i~i~i~g~~~~gtvlv   82 (104)
T 1fmb_A            7 KRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQG---TGIGGVGGNVETF-STPVTIKKKGRHIKTRMLV   82 (104)
T ss_dssp             SCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEEC---CCEEETTEEECCE-EEEEEEEETTEEEEEEEEE
T ss_pred             CCCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCCc---cEEEeCCCeEEee-EeeeEEEECCeEEEEEEEE
Confidence            3567899999999999999999999999999999998754 211   2356888754444 7778999998877666555


Q ss_pred             ecCCCcccccchhhhhcceEEEEe
Q psy8018         227 LEDQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       227 l~~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                      -+  ...-|+|.|+|.+.+|.+||
T Consensus        83 ~~--tp~niiGRd~L~qlg~tLnf  104 (104)
T 1fmb_A           83 AD--IPVTILGRDILQDLGAKLVL  104 (104)
T ss_dssp             ES--CSSCEECHHHHHHTTCCCCC
T ss_pred             CC--CCCCEecHhHHhhcCcEEeC
Confidence            33  45579999999999999876

>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1

Probab=99.19  E-value=7.1e-11  Score=92.94  Aligned_cols=72  Identities=14%  Similarity=0.320  Sum_probs=67.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|.|++ +|+.+.+.|.++++++.|+..++++.|+|+++++|+|+|+.|.++ +|.++|++++||+|.+..++
T Consensus        32 I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~-~Tp~dl~medgD~Idv~~~q  103 (106)
T 2eke_C           32 INLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQ  103 (106)
T ss_dssp             EEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred             EEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCC-CCHHHcCCCCCCEEEEEeec
Confidence            4677888 999999999999999999999999999999999999999999876 89999999999999998864

>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}

Probab=99.17  E-value=2.3e-11  Score=96.32  Aligned_cols=75  Identities=19%  Similarity=0.304  Sum_probs=69.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA   76 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p   76 (280)
                      |+|+|++.+|..+.+.|.++++++.|+..+++..|+|+++|+|+|+|+.|.++ +|+++|++++||+|.+...+..
T Consensus        27 I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~-~Tp~dl~mEDgD~Idv~~~q~G  101 (110)
T 2k8h_A           27 VAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDET-KTPEELGMEDDDVIDAMVEQTG  101 (110)
T ss_dssp             EEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSS-SHHHHHHCSSEEEEEEECCCCC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEcccC
Confidence            56888888999999999999999999999999999999999999999999876 8999999999999999886443

>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...

Probab=98.97  E-value=4.3e-09  Score=81.55  Aligned_cols=91  Identities=18%  Similarity=0.353  Sum_probs=68.7

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce-eeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW-AGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl  227 (280)
                      +.++.++|||+++.||+||||..|+++.     ..++.    ++ .-+..|+|+....-+...+++++.+.....++.| 
T Consensus         8 RP~vti~I~Gq~~e~LLDTGAD~TVl~~-----~~~Pg----~w~pk~igGiGG~i~v~qy~~i~iei~g~~~~gtvlV-   77 (99)
T 3ec0_A            8 RPVVTAYIEGQPVEVLLDTGADDSIVAG-----IELGN----NYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMT-   77 (99)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEESS-----CCCCS----CCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE-
T ss_pred             CCeEEEEECCEEEEEEEecCCCceEEcC-----cccCC----CCCceEEEecCCcEeeeEEeeEEEEECCeEEEEEEEe-
Confidence            4578899999999999999999999963     33332    22 1245688876555567778999999876666666 


Q ss_pred             cCCCcccccchhhhhcceEEEEe
Q psy8018         228 EDQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       228 ~~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                      .. ..-=|+|-|+|.+.+|.++|
T Consensus        78 ~~-tPvniiGRnlLtqlG~tLnf   99 (99)
T 3ec0_A           78 GD-TPINIFGRNILTALGMSLNL   99 (99)
T ss_dssp             EC-CSSCEECHHHHHHHTCEEEC
T ss_pred             CC-CCcCeeehhhHhhcCcEEeC
Confidence            33 33368999999999999986

>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...

Probab=98.92  E-value=1.3e-08  Score=79.00  Aligned_cols=92  Identities=16%  Similarity=0.307  Sum_probs=70.0

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEec
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVLE  228 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl~  228 (280)
                      +.++.++|+|+++.||+||||..|+++.     ..++..-.   .-+..|+|+....-+...+++++.+.....++.| .
T Consensus         8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~-----~~~p~~wk---pk~igGiGG~i~v~qy~qi~iei~g~~~~gtvlV-~   78 (99)
T 2hs1_A            8 RPLVTIKIGGQLKEALLDTGADDTIIEE-----MSLPGRWK---PKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLV-G   78 (99)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSEEESC-----CSSCCCCE---EEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEE-S
T ss_pred             CCEEEEEECCEEEEEEeccCCCcEEEec-----ccCCCCCC---CcEEEeCCCcEeeeEeccEEEEEeCCEEEEEEEe-C
Confidence            4568899999999999999999999984     34442211   1245788876656677778999999877766666 3


Q ss_pred             CCCcccccchhhhhcceEEEEe
Q psy8018         229 DQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       229 ~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                      ..++ =|+|.|+|.+.+|.++|
T Consensus        79 ~tPv-niiGRd~Ltqlg~tLnf   99 (99)
T 2hs1_A           79 PTPV-NIIGRNLLTQIGATLNF   99 (99)
T ss_dssp             CCSS-CEECHHHHTTTTCEEEC
T ss_pred             CCcc-CchhHhHHHHcCCEEeC
Confidence            3334 58999999999999986

>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1

Probab=98.83  E-value=2e-08  Score=79.97  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=66.0

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      +|.|+..+|..+.+.|.+++++..|+....+..|+|+.+++++|+|+.|.++ .|.+++++.+||+|.+...|
T Consensus        42 ~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~-~TP~dL~MEDgD~IdV~~~Q  113 (115)
T 3kyd_D           42 KLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQEQ  113 (115)
T ss_dssp             EEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTT-CCTTTTTCCTTCEEEEEECC
T ss_pred             EEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCC-CCHHHcCCCCCCEEEEEeec
Confidence            4566677888889999999999999999999999999999999999999875 89999999999999998754

>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...

Probab=98.82  E-value=3.5e-08  Score=85.68  Aligned_cols=92  Identities=15%  Similarity=0.309  Sum_probs=72.3

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce-eeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW-AGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl  227 (280)
                      +..+.++|||+++.||+||||+.|+++     ..+++.    ++ ..+..|+|+....-+....++++.+.....++.|-
T Consensus         8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~-----~~~lpg----~w~pk~igGIGG~i~vrqy~~i~iei~g~~~~gtvlVg   78 (203)
T 3ka2_A            8 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLPG----XWKPKLIGGIAGFIKVRQYDQIPVEIXGHKAIGTVLVG   78 (203)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCSS----CEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES
T ss_pred             CCeEEEEECCEEEEEEEecCCCceEEe-----cccCCC----CCCceEEEEccCcEEEEEEcceeEEEcCeEEEEEEeeC
Confidence            446889999999999999999999998     355543    33 22457888766666777789999998766666553


Q ss_pred             cCCCcccccchhhhhcceEEEEec
Q psy8018         228 EDQPMDMLLGLDMLKRHQVQIAIE  251 (280)
Q Consensus       228 ~~~~~d~ILG~D~L~~~~~~ID~~  251 (280)
                        ....-|+|.|+|.+.+|.++|.
T Consensus        79 --~tPvnIiGRd~LtqlG~tLnf~  100 (203)
T 3ka2_A           79 --PTPVNIIGRNLLTQIGXTLNFX  100 (203)
T ss_dssp             --CCSSCEECHHHHTTTTCEEEGG
T ss_pred             --CCCcCccchhhhhhcCceEEec
Confidence              3455699999999999999998

>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*

Probab=98.71  E-value=5.8e-08  Score=77.36  Aligned_cols=93  Identities=23%  Similarity=0.318  Sum_probs=66.5

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceee-e-eecCceeeEEeEEEEEEEEECCeE-----EE
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAG-I-AKGVGVQRIIGRIHMVQIAIENDF-----LT  221 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g-~-a~gvG~~~~~g~i~~~~i~IG~~~-----~~  221 (280)
                      +.++ ++|||+++.||+||||..|+++..-     +.+ ...++.. + ..|+|+....-+...+.++|.+..     ..
T Consensus        14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~~~-----~~~-~p~~wkpk~~igGiGG~i~v~qy~qv~iei~g~~~~~~~~~   86 (116)
T 2hah_A           14 PEIL-IFVNGYPIKFLLDTGADITVLNRRD-----FQV-KNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENYKTQCIF   86 (116)
T ss_dssp             CEEE-EEETTEEEEEEECTTCSSCEEEGGG-----CCC-TTCEEEEEEEEEETTEEEEEEEEEEEEEEECCTTSCCEEEE
T ss_pred             CCEE-EEECCEEEEEEecCCCCcEEEcccc-----ccc-CCCCCCCceEEecCCCceeeeEEccEEEEEeCCCCCcceeE
Confidence            5667 9999999999999999999998532     200 0223322 2 568887555556667789998765     55


Q ss_pred             eEEEEecCCC--cccccchhhhhcceEEEE
Q psy8018         222 TSFSVLEDQP--MDMLLGLDMLKRHQVQIA  249 (280)
Q Consensus       222 ~~~~Vl~~~~--~d~ILG~D~L~~~~~~ID  249 (280)
                      -++.|.++.+  + =|+|-|+|.+.+|.+.
T Consensus        87 gtvlV~p~tP~~v-niiGRd~Ltqlg~tL~  115 (116)
T 2hah_A           87 GNVCVLEDNSTPV-NILGRDNMIKFNIRLV  115 (116)
T ss_dssp             EEEEEETTCCCSS-EEECHHHHTTTTCCCC
T ss_pred             EEEEECCCCCccc-cEecHHHHhHcCCEEe
Confidence            5666776444  4 5899999999998764

>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}

Probab=98.67  E-value=9.1e-08  Score=83.08  Aligned_cols=75  Identities=13%  Similarity=0.283  Sum_probs=67.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART   78 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~   78 (280)
                      +|.|+ .+|....+.|.+++++..|+...++..|+|+.++|++|+|+.|.++ .|.+++++.+||+|.+...+..|+
T Consensus        31 ~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~-~TP~dL~MEdgD~Idv~~~q~gg~  105 (200)
T 3pge_A           31 NLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQIGGG  105 (200)
T ss_dssp             EEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECCSCCC
T ss_pred             EEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeccCcCc
Confidence            45665 4888999999999999999999999999999999999999999876 899999999999999999765554

>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}

Probab=98.64  E-value=1.4e-08  Score=75.73  Aligned_cols=71  Identities=18%  Similarity=0.263  Sum_probs=58.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCee---e-CCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNA---L-VDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~---L-~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |.|.|+..+| .+.++|++++|+.+|+++|++.+++|++.|.|++.-.+   | .+.+.+|+++||+.||+|+|..
T Consensus         5 m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~~   79 (80)
T 2pjh_A            5 IIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFP   79 (80)
T ss_dssp             CCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC--
T ss_pred             EEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEec
Confidence            5678888887 66699999999999999999999999999888765444   3 2245899999999999999853

>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}

Probab=98.52  E-value=1.8e-07  Score=80.42  Aligned_cols=74  Identities=14%  Similarity=0.290  Sum_probs=66.6

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART   78 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~   78 (280)
                      |.|+ .+|..+.+.|.+++++..|+....+..|+|+.+++++|+|+.|.++ .|.+++++.|||+|.+...|..|.
T Consensus        60 LKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~d-dTPeDLdMEDGDtIDV~leQ~GG~  133 (207)
T 3tix_A           60 LKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQAD-QTPEDLDMEDNDIIEAHREQIGGL  133 (207)
T ss_dssp             EEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSS-CCTTTTTCCTTEEEEECCCCCTTG
T ss_pred             EEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCC-CCHHHcCCCCCCEEEEEEeccCCC
Confidence            4454 4888999999999999999999999999999999999999999875 899999999999999998765553

>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}

Probab=98.34  E-value=1e-06  Score=67.49  Aligned_cols=67  Identities=9%  Similarity=0.165  Sum_probs=51.2

Q ss_pred             cCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeC-CCcCCccccC-CCCCCEEEEEEe
Q psy8018           7 SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALV-DNKKTLKDYN-IQDGDLVLLKRV   73 (280)
Q Consensus         7 ~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~-d~~~tL~~~g-I~~gd~l~l~~~   73 (280)
                      ...+..++++|.|+.|+..||+.|++++|||+++|+|+|.|+.|. +.++.-..|- -.+..-|+|..+
T Consensus        20 ~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~   88 (94)
T 4efo_A           20 LQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL   88 (94)
T ss_dssp             TTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred             cccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence            456888999999999999999999999999999999999998874 3333444443 233445555543

>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}

Probab=98.31  E-value=8.2e-08  Score=83.58  Aligned_cols=76  Identities=14%  Similarity=0.292  Sum_probs=1.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART   78 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~   78 (280)
                      |.|.| ..+|....+.|.+++.+..|+....+..|+|+++++++|+|+.|.++ .|.++++++|||+|.+...+..|.
T Consensus        22 InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dd-dTPadL~MEDGDtIDV~leQ~GG~   97 (227)
T 3v7o_A           22 INLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQIGGL   97 (227)
T ss_dssp             ----------------------------------------------------------------------------CC
T ss_pred             EEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCC-CCHHHcCCCCCCEEEEEecccCCc
Confidence            45666 56788889999999999999999999999999999999999999875 899999999999999998765554

>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...

Probab=98.31  E-value=5e-06  Score=72.15  Aligned_cols=91  Identities=16%  Similarity=0.332  Sum_probs=68.8

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce-eeeeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW-AGIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl  227 (280)
                      +..+.++|+|+++.||+||||..|+++     ...++    .+| .-+..|+|+.-..-+...+++++.+.....++.|-
T Consensus       112 rP~~~iki~Gq~~e~LlDTGAD~TVl~-----~~~lp----g~w~pk~igGiGg~i~v~qy~~i~iei~g~~~~~tvlVg  182 (203)
T 3ka2_A          112 RPLVTIRIGGQLKEALLDTGADDTVIE-----ELNLP----GXWKPKLIGGIGGFIKVRQYDQIPVEIXGHKAIGTVLVG  182 (203)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCC----SCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEES
T ss_pred             CCcEEEEECCEEEeeeecccCCceeee-----cccCC----CCCCceEEeeccceEEEEEeccEEEEECCeEEEEEEEEC
Confidence            445789999999999999999999995     24443    233 12456888765566667778999988766666663


Q ss_pred             cCCCcccccchhhhhcceEEEEe
Q psy8018         228 EDQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       228 ~~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                      +  ..-=|+|-|.|.+.+|.++|
T Consensus       183 p--tPvniiGRn~LtqlG~tl~f  203 (203)
T 3ka2_A          183 P--TPVNIIGRNLLTQIGXTLNF  203 (203)
T ss_dssp             C--CSSCEECHHHHGGGTCEEEC
T ss_pred             C--CCcCeechhhHHHhCCeeeC
Confidence            3  35568999999999999986

>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A

Probab=98.18  E-value=1.3e-06  Score=69.26  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=54.7

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCcccccccee-eeeecCceeeEEeEEEEEEE-E-ECCeEEEeEEE
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWA-GIAKGVGVQRIIGRIHMVQI-A-IENDFLTTSFS  225 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~-g~a~gvG~~~~~g~i~~~~i-~-IG~~~~~~~~~  225 (280)
                      +..+.++|||+++.||+||||..|+++.     ..++..-..... -+..|+|+.-..-+.....+ + +.+...-....
T Consensus         9 RP~vti~I~Gq~~eaLLDTGADdTVi~~-----~~lpg~W~p~~~~k~igGIGG~i~v~qy~~~~~~~~i~g~k~i~tvl   83 (114)
T 3sqf_A            9 KPSLTLWLDDKMFTGLINTGADVTIIKL-----EDWPPNWPITDTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGLIKPF   83 (114)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEEG-----GGSCTTSCEEECCCCCTTCCGGGCCEEESSCEEEECTTCCEEEECCE
T ss_pred             CCeEEEEECCEEEEEEEccCCCceEEec-----ccCCCCcccCcCceEEEeccceEEEEEeccceEEEecCCCEEEEEEE
Confidence            4457899999999999999999999984     333321111000 13457886322222222222 2 44544333334


Q ss_pred             EecCCCcccccchhhhhcceEEEEecccEE
Q psy8018         226 VLEDQPMDMLLGLDMLKRHQVQIAIENDFL  255 (280)
Q Consensus       226 Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L  255 (280)
                      |+...++ =|+|-|.|.+.+|.++|.+..+
T Consensus        84 V~~ptPv-NIiGRn~LtqlG~tLnfp~~~~  112 (114)
T 3sqf_A           84 VIPNLPV-NLWGRDLLSQMKIMMASPNDIV  112 (114)
T ss_dssp             EETTCSS-CEECHHHHTTSCC---------
T ss_pred             ECCCCcc-cEEchhhHhhcCcEEECCCccc
Confidence            5433344 4699999999999999986543

>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*

Probab=98.14  E-value=1.8e-05  Score=58.30  Aligned_cols=66  Identities=23%  Similarity=0.314  Sum_probs=58.4

Q ss_pred             EEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           5 VTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         5 V~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      ++.+...-+-+.|.++.+|.+|-+.-..+.|||++ ..+|.|.|..|..+ .|+++|++.|||.|-++
T Consensus        14 ~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~-~tp~DlemeD~D~IDvm   80 (82)
T 3goe_A           14 LRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPN-DQVQSTELEDEDQVSVV   80 (82)
T ss_dssp             EEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTT-SBGGGSSCCTTCEEEEE
T ss_pred             hhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCcc-CChhhhCCcCCceeeee
Confidence            45555556779999999999999999999999999 99999999999754 89999999999999875

>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}

Probab=98.12  E-value=1.2e-05  Score=62.00  Aligned_cols=68  Identities=21%  Similarity=0.382  Sum_probs=60.6

Q ss_pred             EEEEcCCC-cEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           3 VTVTSLDN-ECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         3 ItV~~~~g-~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      |.|+..+| +.+.+.|.+++.+..|.....++.|++++..+++|+|..|..+ .|.+++++.+||+|.+.
T Consensus        28 LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~-~TP~dLdMEDgD~IDv~   96 (97)
T 2jxx_A           28 LRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGR-ELPADLGMESGDLIEVW   96 (97)
T ss_dssp             EEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSC-SCHHHHTCCTTEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEe
Confidence            44555677 4788999999999999999999999999999999999999865 89999999999999874

>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}

Probab=97.98  E-value=1.1e-05  Score=65.24  Aligned_cols=70  Identities=17%  Similarity=0.271  Sum_probs=59.0

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCc-------------------------------------ceEEEE
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQ-------------------------------------EIAIEF   45 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~-------------------------------------~Q~Li~   45 (280)
                      +.|+.++|...++-|+.+.+|.+++..|..+.||+..                                     .|+|-.
T Consensus        14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~~   93 (128)
T 2kc2_A           14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLHT   93 (128)
T ss_dssp             EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCCC
T ss_pred             EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhcc
Confidence            7899999999999999999999999999999999854                                     344422


Q ss_pred             --CCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018          46 --QGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus        46 --~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                        .+..|. +++||.++||.++++|.|..|
T Consensus        94 dd~~~WLD-~srtL~EQGI~e~~tllLRrK  122 (128)
T 2kc2_A           94 DDELNWLD-HGRTLREQGVEEHETLLLRRK  122 (128)
T ss_dssp             SSSEEEEC-SSSCHHHHTCCTTSEEEEEES
T ss_pred             cCCCCccc-CCCcHHHcCCCCCCEEEEEEE
Confidence              235674 569999999999999999875

>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*

Probab=97.95  E-value=6.2e-06  Score=66.26  Aligned_cols=88  Identities=20%  Similarity=0.263  Sum_probs=50.9

Q ss_pred             EcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce-ee--eeecCceeeEEeEEE-EEEEEECCe--EEEeEEEEecC
Q psy8018         156 VNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW-AG--IAKGVGVQRIIGRIH-MVQIAIEND--FLTTSFSVLED  229 (280)
Q Consensus       156 InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~-~g--~a~gvG~~~~~g~i~-~~~i~IG~~--~~~~~~~Vl~~  229 (280)
                      |+|+.+.||+||||..|+++.     ..++..-. ++ .+  ...|+|+....-+.. ..++++-+.  ....++.|.+.
T Consensus        27 i~gq~~eaLLDTGAD~TVl~~-----~~lP~~W~-k~~~~~~~igGIGG~i~v~qy~~~i~iei~g~~g~~~~tvlV~P~  100 (124)
T 2rsp_A           27 QRSVYITALLDSGADITIISE-----EDWPTDWP-VMEAANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFPA  100 (124)
T ss_dssp             CSEEEEEEEECTTCSSCEEET-----TTSCTTSC-EEECC---------CCCEEEESSCEEEEEECTTSCBCCCEEECCE
T ss_pred             CCCEEEEEEecCCCCcEEEec-----ccCCCcce-eeccccceeeecCceEeeEEeCCceEEEEeCCCCcEEEEEEECcC
Confidence            999999999999999999984     33332211 11 11  145777643333444 456777554  33334445442


Q ss_pred             C--CcccccchhhhhcceEEEE
Q psy8018         230 Q--PMDMLLGLDMLKRHQVQIA  249 (280)
Q Consensus       230 ~--~~d~ILG~D~L~~~~~~ID  249 (280)
                      .  ..-=|+|-|.|.+.+|.+.
T Consensus       101 ~~~tPvnIiGRdlLtqlG~tL~  122 (124)
T 2rsp_A          101 VAMVRGSILGRDCLQGLGLRLT  122 (124)
T ss_dssp             EESCSSEEECHHHHHHTTCEEE
T ss_pred             CCCCceeEECHhHHhhCCcEEe
Confidence            1  1235899999999999875

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=97.92  E-value=3.7e-05  Score=66.92  Aligned_cols=74  Identities=14%  Similarity=0.315  Sum_probs=65.3

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCCC
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVART   78 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~~   78 (280)
                      |.|+. +|....+.|..++.+..|+...++..|+|+++++++|+|+.+.++ +|.+++++.++|+|.+...|..++
T Consensus        24 ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~-~Tpk~L~~ed~d~I~~~~eq~Gg~   97 (209)
T 3uf8_A           24 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQIGGS   97 (209)
T ss_dssp             EEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTT-CCTTTTTCCTTEEEEEECSCTTCC
T ss_pred             EEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCC-CChHHhhhcccccchhhccccccc
Confidence            44455 677888999999999999999999999999999999999999875 899999999999999988755443

>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}

Probab=97.75  E-value=6.7e-05  Score=55.87  Aligned_cols=67  Identities=16%  Similarity=0.230  Sum_probs=55.4

Q ss_pred             EEEEc--CCCcEEEEEeCCCccHHHHHHHHHHHhCCCC-----cceEEEECCeeeCCCcCCccccCCCCCCEEEE
Q psy8018           3 VTVTS--LDNECFLLDVSEDLELENFKAFCEVQSGISA-----QEIAIEFQGNALVDNKKTLKDYNIQDGDLVLL   70 (280)
Q Consensus         3 ItV~~--~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~-----~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l   70 (280)
                      ||+..  -.++.+.|.|+...|+..|+..+.+.++++.     .+.++.-.|..|.++ ++|++|||++||.|.+
T Consensus         7 ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~-~~L~d~~ItnGD~Lei   80 (81)
T 2bps_A            7 ITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGE-CKLSDCGITNGDRLEI   80 (81)
T ss_dssp             EEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETT-SBTGGGTCCTTCEEEE
T ss_pred             EEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCC-CEEeeCCcCCCCEEEE
Confidence            44443  3799999999999999999999999998865     234556678888875 8999999999999875

>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}

Probab=97.70  E-value=5e-06  Score=77.94  Aligned_cols=73  Identities=14%  Similarity=0.312  Sum_probs=0.0

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR   77 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~   77 (280)
                      |.|++ +|....+.|.++++++.|+...++..|+++++++++|+|+.|.++ .|.+++|+++||+|.+...|..|
T Consensus        24 LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~-~TP~~L~MEDgD~Idv~~~Q~g~   96 (360)
T 3ix6_A           24 LKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQIGG   96 (360)
T ss_dssp             ---------------------------------------------------------------------------
T ss_pred             EEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCC-CChHHcCCCccchhhhhhccCch
Confidence            44444 577788999999999999999999999999999999999999876 89999999999999999875433

>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2

Probab=97.61  E-value=0.00028  Score=53.46  Aligned_cols=72  Identities=14%  Similarity=0.086  Sum_probs=66.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |.|+|-..+++..++.|.|++++.++-+..-.++|+++++-.|.|++|+|. -+-++.-.|+-+|..|.|+.+
T Consensus        10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lD-LSlpfRlsgLpnnAkLELv~~   81 (90)
T 2al3_A           10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLD-LSLQWRFANLPNNAKLEMVPV   81 (90)
T ss_dssp             CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEES-SSCBHHHHCCCSSCEEEEECS
T ss_pred             cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEecc-ccceeEecCCCCCCEEEEEEc
Confidence            678999999999999999999999998888889999999999999999995 458999999999999999875

>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}

Probab=97.52  E-value=0.0006  Score=52.07  Aligned_cols=69  Identities=13%  Similarity=0.166  Sum_probs=62.1

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      .|.|+. +|...-+-|-.+.-.+.|...-....|+++++.+++|+|..+..+ .|-+++|+.+||+|-+..
T Consensus        23 niKV~~-~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~-~TP~~L~meD~DiID~~~   91 (95)
T 2l76_A           23 PLKIRC-RADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPT-ATPRTLKLGVADIIDCVV   91 (95)
T ss_dssp             EEEEEC-SSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTT-SCHHHHTCCSSCEEEEEE
T ss_pred             EEEEEc-CCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCC-CCHhHcCCCCCCEEEEEE
Confidence            355664 678888999999999999999999999999999999999999875 899999999999998876

>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A

Probab=97.51  E-value=0.00044  Score=51.30  Aligned_cols=71  Identities=15%  Similarity=0.214  Sum_probs=60.9

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV--DNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~--d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|-|+.++|....-....+.||.+|.+.|+. .+.+.....|+  |=.|.|.  |.++||+++|+.++++|+|..+
T Consensus         9 ~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~k   83 (84)
T 3qx1_A            9 KLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK   83 (84)
T ss_dssp             EEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence            4678899999988889999999999999998 67788888998  4468885  6668999999999999998653

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=97.44  E-value=1.9e-05  Score=74.62  Aligned_cols=69  Identities=13%  Similarity=0.300  Sum_probs=0.0

Q ss_pred             EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      .|++ +|....+.|.+++++..|+...+++.|+|+.+++++|+|+.|.++ +|.+++|+++||+|.+...|
T Consensus        34 kv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~-~Tp~~l~med~d~i~~~~~q  102 (389)
T 4da1_A           34 KVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QAPEDLDMEDNDIIEAHREQ  102 (389)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             EEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEeeeeecc
Confidence            3444 567778999999999999999999999999999999999999875 89999999999999998774

>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*

Probab=97.25  E-value=0.00034  Score=55.17  Aligned_cols=97  Identities=13%  Similarity=0.190  Sum_probs=57.0

Q ss_pred             EEEEEEEEc-----CEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECC--eE--
Q psy8018         149 MLYINCRVN-----GHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIEN--DF--  219 (280)
Q Consensus       149 ~l~i~~~In-----G~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~--~~--  219 (280)
                      +-.+.++|+     |+.+.||+||||..|++..     ..++..-......+.-|+|+.....+....++.+-.  ..  
T Consensus        10 RPlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~lPg~Wkp~~tkiiGGiGg~~~~~qs~~~pv~i~lpfr~~p   84 (116)
T 3liy_A           10 RPVIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----ALFSSNTPLKNTSVLGAGGQTQDHFKLTSLPVLIRLPFRTTP   84 (116)
T ss_dssp             CCEEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GGSCTTCCEEECCEEETTEEESSSEEEESSCEEEECTTCCSC
T ss_pred             CCeEEEEEccccCCCeEeEEEeccCCCccEEec-----ccCCCCCcccccceEeecccceeeeEecCCCeEEEeccCCcc
Confidence            445889999     9999999999999999973     334322111101244567754434444444555543  01  


Q ss_pred             EEeEEEEecCCCcccccchhhhhcceEEEEe
Q psy8018         220 LTTSFSVLEDQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       220 ~~~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                      ...+...++..+.=-|||-|.|.+.+..+.+
T Consensus        85 v~l~~~lv~~~~~w~iigRd~l~q~q~~l~l  115 (116)
T 3liy_A           85 IVLTSCLVDTKNNWAIIGRDALQQCQGVLYL  115 (116)
T ss_dssp             EEESSCEEETTSCCCEECHHHHHHTTCEEEC
T ss_pred             eeeceEEEcCCCceeEechhHHhhhccEEec
Confidence            1111122222233379999999998876643

>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A

Probab=97.19  E-value=0.002  Score=50.22  Aligned_cols=72  Identities=19%  Similarity=0.309  Sum_probs=62.5

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV--DNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~--d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|-|+.++|..+.-....+.||.+|.+.|+...+.+.....|+  |--|.+.  |.++||+++|+.+..+|++...
T Consensus        15 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~   90 (109)
T 2dzk_A           15 RIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPA   90 (109)
T ss_dssp             EEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECC
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEEC
Confidence            5778899999999999999999999999999988877778887  4577786  5568999999999999998765

>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3

Probab=96.81  E-value=0.00093  Score=55.02  Aligned_cols=96  Identities=14%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             CEEEEEEEcCCCcceecCHHHHHHc---C-------Cccc-----cccce---eeeeecCce---------eeEEeEEEE
Q psy8018         158 GHPVKAFIDSGAQTTIMSAACAARV---N-------ITRL-----IDTRW---AGIAKGVGV---------QRIIGRIHM  210 (280)
Q Consensus       158 G~~v~alVDTGAq~tiis~~~A~rl---g-------L~~~-----~d~r~---~g~a~gvG~---------~~~~g~i~~  210 (280)
                      |.+++|=|||||..|-|+..-.+..   |       +...     ...+.   .-+....|.         ...-..| .
T Consensus        17 g~~~~AKiDTGA~TSSLhA~dI~~Ferdg~~wVrF~~~~~~~~~~~e~pv~~~~~Ik~s~g~~~~~~~~~~~e~R~VV-~   95 (146)
T 2pma_A           17 NLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVV-L   95 (146)
T ss_dssp             TEEEEEEECTTCSSEEEECEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEEEEEC---------------CCEEEEE-E
T ss_pred             CCEEEEEecCCcCcceecceeEEEeeeCCCcEEEEEEecCCCCceEEEEeEEEEEEecCCCccccccccCCcccccEE-E
Confidence            7789999999999999986544321   1       1000     00000   001111122         1222222 2


Q ss_pred             EEEEECCeEEEeEEEEecCC--CcccccchhhhhcceEEEEecccE
Q psy8018         211 VQIAIENDFLTTSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDF  254 (280)
Q Consensus       211 ~~i~IG~~~~~~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~  254 (280)
                      ..+++|+...++.|..-+-.  .+.+|||-+||+..++.+|.....
T Consensus        96 ~~i~lG~~~~~ie~tLtdRs~m~ypmLLGR~~L~~~~~lVD~s~~~  141 (146)
T 2pma_A           96 LNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTF  141 (146)
T ss_dssp             EEEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTEEEETTCCC
T ss_pred             EEEEECCEEEEEEEEEcCCCcCCCCEEechhHHhhCCEEECCchhc
Confidence            38999999999999988744  577999999999999999988754

>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2

Probab=96.76  E-value=0.0052  Score=49.03  Aligned_cols=71  Identities=14%  Similarity=0.239  Sum_probs=61.3

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeee--CCCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNAL--VDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L--~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|-|+.++|..+.-....+.||.+|.+.|+.. +.+.....|+  |=.|.|  .|.++||+++|+.+..+|+|...
T Consensus        45 ~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~  119 (124)
T 1wj4_A           45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES  119 (124)
T ss_dssp             EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEc
Confidence            47788999999999999999999999999887 7777888887  458889  56679999999999999988763

>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}

Probab=96.49  E-value=0.0073  Score=43.85  Aligned_cols=61  Identities=21%  Similarity=0.295  Sum_probs=49.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|+..+.....+++++..||.+|-+.    .|+|++.-....||+.+..+ .      +.+||.|.+..
T Consensus         1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~~----Lgl~~~~VvV~vNG~~v~~d-~------~l~GD~VeIv~   61 (74)
T 2l32_A            1 MNVTVEVVGEETSEVAVDDDGTYADLVRA----VDLSPHEVTVLVDGRPVPED-Q------SVEVDRVKVLR   61 (74)
T ss_dssp             CEEEEECSSSSEEEEECSTTCSHHHHHHT----TCCCSSCCCEECCCCCCCTT-S------SSCCCCEEECS
T ss_pred             CEEEEEEeCccceeEEcCCCCcHHHHHHH----cCCCcceEEEEECCEECCHH-H------CCCCCEEEEEE
Confidence            99999987655667999999999998665    79999888888899998755 2      34699998864

>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2

Probab=96.32  E-value=0.016  Score=45.04  Aligned_cols=71  Identities=11%  Similarity=0.139  Sum_probs=59.4

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC-CCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV-DNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~-d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|-|+.++|..+.-....+.||.+|.+.|+.. +..+....|+  |=.|.|. |.++||+++|+.+..+|+|..+
T Consensus        25 ~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~   98 (109)
T 2cr5_A           25 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   98 (109)
T ss_dssp             EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeC
Confidence            57788999999888899999999999999976 5556677776  4477886 5669999999999999988764

>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A

Probab=95.89  E-value=0.017  Score=46.18  Aligned_cols=66  Identities=15%  Similarity=0.322  Sum_probs=54.7

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHh-CCCCcceEEE--ECCeeeCCCcCCccccCCCCCCE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQS-GISAQEIAIE--FQGNALVDNKKTLKDYNIQDGDL   67 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~-gip~~~Q~Li--~~Gk~L~d~~~tL~~~gI~~gd~   67 (280)
                      +|-|+..+|..+.-....+.||.+|.+.|.... +.+.....|+  |-.|.|.|+++||+++|+.+..+
T Consensus        54 ~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~psav  122 (127)
T 1s3s_G           54 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNAVI  122 (127)
T ss_dssp             CEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSCEE
T ss_pred             EEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCceE
Confidence            477899999999999999999999999999863 4555677777  45788987779999999998443

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=95.73  E-value=0.11  Score=49.69  Aligned_cols=92  Identities=12%  Similarity=0.269  Sum_probs=63.7

Q ss_pred             eeEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCccccccc----e--e----eeeecCceeeEEeEEEEEE
Q psy8018         147 VIMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       147 ~~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~  212 (280)
                      ....++++.|+  ++++.+++|||++.+.+. ..|. ..|.-....+..    +  .    .+.+|-|+  ..|.+....
T Consensus       136 d~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs--~~G~~~~Dt  213 (451)
T 3qvc_A          136 NVLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT--ISGIFSKDL  213 (451)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE--EEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE--EEEEEEEEE
Confidence            45689999998  899999999999988874 3442 345432222211    1  1    13345554  789998889


Q ss_pred             EEECCeEEEeEEEEecC----------CCcccccchhh
Q psy8018         213 IAIENDFLTTSFSVLED----------QPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~~~~~Vl~~----------~~~d~ILG~D~  240 (280)
                      +.+|+..++..|.+...          ...|+||||.+
T Consensus       214 v~igg~~v~~~Fg~a~~t~~~~~~f~~~~~dGILGLg~  251 (451)
T 3qvc_A          214 VTIGKLSVPYKFIEMTEIVGFEPFYSESDVDGVFGLGW  251 (451)
T ss_dssp             EEETTEEEEEEEEEEEEEEECTTHHHHSCCCEEEECSS
T ss_pred             EEECCEEEEEEEEEEEeccccCCCccCCCCCEEEecCC
Confidence            99999877766666543          35799999975

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=95.41  E-value=0.062  Score=50.27  Aligned_cols=92  Identities=16%  Similarity=0.317  Sum_probs=62.9

Q ss_pred             eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH---HHcCCccccccc----e--e----eeeecCceeeEEeEEEE
Q psy8018         147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA---ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHM  210 (280)
Q Consensus       147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A---~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~  210 (280)
                      ....++++.|+  ++++++++|||++.+-+ +..|.   ..|......+..    +  .    .+.+|-|+  ..|.+..
T Consensus        60 ~~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~  137 (383)
T 2x0b_A           60 DTQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQ  137 (383)
T ss_dssp             TTEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEE
T ss_pred             CCEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc--EEEEEEe
Confidence            35789999998  79999999999998877 44453   345332222211    1  1    13456664  5799988


Q ss_pred             EEEEECCeEEEeEEEEecC--------CCcccccchhh
Q psy8018         211 VQIAIENDFLTTSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       211 ~~i~IG~~~~~~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      ..+.+|+..++..|.+...        ...|+||||-+
T Consensus       138 Dtv~ig~~~v~~~Fg~a~~~~g~~f~~~~~dGIlGLg~  175 (383)
T 2x0b_A          138 DIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF  175 (383)
T ss_dssp             EEEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred             eEEEEcCceEEEEEEEEEecCCcccccCCCceEeccCC
Confidence            8999999877666655542        25799999875

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=95.07  E-value=0.17  Score=35.77  Aligned_cols=61  Identities=23%  Similarity=0.369  Sum_probs=46.4

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|.-.. ....+++++..|+.+|.+.+    ++++..-.+..||..+..+ .     -+++||.|.+..
T Consensus         5 m~i~vNg~~-~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~   65 (70)
T 1ryj_A            5 MKFTVITDD-GKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIR   65 (70)
T ss_dssp             EEEEEEETT-EEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEE
T ss_pred             EEEEEeCcc-CceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEe
Confidence            677776533 23467888889999998875    5777777788999998754 2     599999999876

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=94.80  E-value=0.097  Score=48.65  Aligned_cols=92  Identities=23%  Similarity=0.361  Sum_probs=61.9

Q ss_pred             eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH-HHcCCccccccc----e--e----eeeecCceeeEEeEEEEEE
Q psy8018         147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA-ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A-~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~  212 (280)
                      ....++++.|+  ++++.+++|||++.+-+ +..|. ..|+-....+..    +  .    .+.+|-|+  ..|.+....
T Consensus        61 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt  138 (375)
T 1miq_A           61 NIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT--VKGFFSKDL  138 (375)
T ss_dssp             CEEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe--EEEEEEEEE
Confidence            45788999998  89999999999999877 44442 234322222111    1  1    23455554  578888889


Q ss_pred             EEECCeEEEeEEEEecC----------CCcccccchhh
Q psy8018         213 IAIENDFLTTSFSVLED----------QPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~~~~~Vl~~----------~~~d~ILG~D~  240 (280)
                      +.+|+..++-.|.+...          ...|+||||.+
T Consensus       139 v~ig~~~v~~~Fg~~~~~~~~~~~f~~~~~dGilGLg~  176 (375)
T 1miq_A          139 VTLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW  176 (375)
T ss_dssp             EEETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred             EEEcCceECcEEEEEEeccccccccccCCCceEEeCCC
Confidence            99999766556665544          36799999875

>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A

Probab=94.79  E-value=0.1  Score=45.16  Aligned_cols=63  Identities=11%  Similarity=0.200  Sum_probs=52.7

Q ss_pred             cEEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEE--E-CC--eeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018          11 ECFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIE--F-QG--NALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus        11 ~~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li--~-~G--k~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      ..+++.++...||.+|+..+...++||++ +-||-  | .+  ..|.+.++||++++|.+|..|.|-.+
T Consensus       140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r  208 (217)
T 4a3p_A          140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQK  208 (217)
T ss_dssp             EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEEC
T ss_pred             cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEe
Confidence            34678889999999999999999999997 68885  3 22  33566668999999999999999886

>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}

Probab=94.72  E-value=0.13  Score=45.02  Aligned_cols=62  Identities=13%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHhCCCCc-ceEEEE-C----CeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018          12 CFLLDVSEDLELENFKAFCEVQSGISAQ-EIAIEF-Q----GNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus        12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~-~Q~Li~-~----Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .+++.++...||.+|+..+...++||++ .-||.. +    ...|.|.+.||+++++.+|+.|.+-.+
T Consensus       153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r  220 (231)
T 3jyu_A          153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQ  220 (231)
T ss_dssp             EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEEC
T ss_pred             eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEe
Confidence            4567789999999999999999999997 688864 3    334666668999999999999999886

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=94.50  E-value=0.11  Score=49.99  Aligned_cols=91  Identities=23%  Similarity=0.367  Sum_probs=61.8

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCcccccc----ce------eeeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  ++++.+++|||++.+-+. ..|. ..|.-....+.    .+      -.+.+|-|+  ..|.+....+
T Consensus       138 ~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs--~~G~~~~Dtv  215 (453)
T 2bju_A          138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT--VSGFFSKDLV  215 (453)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE--EEEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC--eEEEEEEEEE
Confidence            5788999998  899999999999998774 4442 23432211111    11      123456665  5799988899


Q ss_pred             EECCeEEEeEEEEecCC----------Ccccccchhh
Q psy8018         214 AIENDFLTTSFSVLEDQ----------PMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~~~~~Vl~~~----------~~d~ILG~D~  240 (280)
                      .+|+..++..|.+....          ..|+||||.+
T Consensus       216 ~ig~~~v~~~Fg~a~~~~~~g~~f~~~~~dGIlGLg~  252 (453)
T 2bju_A          216 TVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW  252 (453)
T ss_dssp             EETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred             EEeCcEEEEEEEEEEEecccCccccccCCceeEeccC
Confidence            99998777666665422          4799999865

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=94.44  E-value=0.061  Score=39.25  Aligned_cols=66  Identities=21%  Similarity=0.348  Sum_probs=49.4

Q ss_pred             CEEEEEcCCCcEEEEEeC--CCccHHHHHHHHHHHhCCC-CcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccCC
Q psy8018           1 MKVTVTSLDNECFLLDVS--EDLELENFKAFCEVQSGIS-AQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVAR   77 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~--~~~tV~~LK~~Ie~e~gip-~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p~   77 (280)
                      |+|+|   +|+.  ++++  +..||.+|.+.    .|++ +..-.+..||..+..  ...+++-+++||.|.+.. .+.|
T Consensus         1 M~I~v---NGe~--~e~~~~~~~Tl~~LL~~----l~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~-~VgG   68 (78)
T 2k5p_A            1 MNLTV---NGKP--STVDGAESLNVTELLSA----LKVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLY-FMGG   68 (78)
T ss_dssp             CEEEE---TTEE--EECSSCSCEEHHHHHHH----HTCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECC-CCCC
T ss_pred             CEEEE---CCEE--EEcCCCCCCcHHHHHHH----cCCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEe-eecC
Confidence            77777   5664  4566  77899998775    4777 777778899999974  467777899999999876 3444


Q ss_pred             C
Q psy8018          78 T   78 (280)
Q Consensus        78 ~   78 (280)
                      .
T Consensus        69 G   69 (78)
T 2k5p_A           69 G   69 (78)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2

Probab=94.34  E-value=0.19  Score=43.49  Aligned_cols=91  Identities=16%  Similarity=0.318  Sum_probs=58.9

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH--HHcCCccccccc----e------eeeeecCceeeEEeEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA--ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A--~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~  212 (280)
                      ...++++.|+  ++++++++|||+..+-+ +..|.  ..|+-....+..    +      -.+.+|-|+  ..|.+....
T Consensus        13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~   90 (239)
T 1b5f_A           13 TSYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS--ITGFFSQDS   90 (239)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc--EEEEEEEEE
Confidence            4678999998  89999999999999877 44452  244322111111    1      113456564  478888889


Q ss_pred             EEECCeEEE-eEEEEec--------CCCcccccchhh
Q psy8018         213 IAIENDFLT-TSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~-~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      +.+|+..++ ..|.+..        ....|+||||-+
T Consensus        91 v~~g~~~v~~~~fg~~~~~~~~~f~~~~~~GilGLg~  127 (239)
T 1b5f_A           91 VTIGDLVVKEQDFIEATDEADNVFLHRLFDGILGLSF  127 (239)
T ss_dssp             EEETTEEEEEEEEEEEEEECHHHHTTCSCCEEEECSC
T ss_pred             EEECCcEEccEEEEEEEeccCccccccCcceEEecCc
Confidence            999987654 3443332        235789999864

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=94.28  E-value=0.17  Score=45.64  Aligned_cols=91  Identities=15%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH-HHcCCccccccc----e------eeeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA-ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A-~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  ++++++++|||+..+-+ +..|. ..|.-....+..    +      -.+.+|-|+  ..|.+....+
T Consensus        14 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v   91 (323)
T 3cms_A           14 SQYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS--MQGILGYDTV   91 (323)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC--eEEEEEEEEE
Confidence            4678999998  79999999999999877 44441 334322111111    1      113455554  5788888899


Q ss_pred             EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+|+..++ ..|.+...        ...|+||||-+
T Consensus        92 ~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~  127 (323)
T 3cms_A           92 TVSNIVDIQQTVGLSTQEPGDFFTYAEFDGILGMAY  127 (323)
T ss_dssp             EETTEEEEEEEEEEEEECCSHHHHHSSCSEEEECSC
T ss_pred             EECCeEEeccEEEEEEecccccccccCCceEEecCc
Confidence            99997655 45655542        25789999864

>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A

Probab=94.25  E-value=0.18  Score=46.63  Aligned_cols=68  Identities=12%  Similarity=0.126  Sum_probs=55.9

Q ss_pred             EEEcCCCcEEEEEeCCCccHHHHHHHHHHHhC----CCCcceEEEE------CCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           4 TVTSLDNECFLLDVSEDLELENFKAFCEVQSG----ISAQEIAIEF------QGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         4 tV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~g----ip~~~Q~Li~------~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .|... +.+.++..+|++||.+....|.++..    .++++--|.-      +|+-|.++ +||+.||+++|+.|....+
T Consensus         7 ~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~-~~l~~y~~~~~~~l~~~~~   84 (371)
T 3ivf_A            7 KISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAG-KALDYYMLRNGDTMEYRKK   84 (371)
T ss_dssp             EEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred             EEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCC-CCHHHhCCCCCceeeccCc
Confidence            34444 78889999999999999999987753    3677778877      56778765 8999999999999998765

>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}

Probab=94.20  E-value=0.23  Score=38.75  Aligned_cols=65  Identities=23%  Similarity=0.354  Sum_probs=47.0

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHH--hCCC------CcceEEEE----CCeeeCCCc------------CCccccCCCC
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQ--SGIS------AQEIAIEF----QGNALVDNK------------KTLKDYNIQD   64 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e--~gip------~~~Q~Li~----~Gk~L~d~~------------~tL~~~gI~~   64 (280)
                      ++..+++.|-..+||.++|++|-..  .|.|      +++..|-+    .|++|.|.+            .||+.|+|.|
T Consensus        22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  101 (111)
T 4e71_A           22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD  101 (111)
T ss_dssp             CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred             CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence            3567888999999999999998765  3554      34666766    356665521            3799999999


Q ss_pred             CCEEEEEEe
Q psy8018          65 GDLVLLKRV   73 (280)
Q Consensus        65 gd~l~l~~~   73 (280)
                      |.+|-|+.+
T Consensus       102 gatl~l~~~  110 (111)
T 4e71_A          102 GATLILSKV  110 (111)
T ss_dssp             TCEEEEEEC
T ss_pred             CCEEEEEeC
Confidence            999998763

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=94.13  E-value=0.14  Score=46.41  Aligned_cols=91  Identities=11%  Similarity=0.143  Sum_probs=60.0

Q ss_pred             eEEEEEEEEcCEEEEEEEcCCCcceec-CHHHH-HHc--CCccccccc---e--e----eeeecCceeeEEeEEEEEEEE
Q psy8018         148 IMLYINCRVNGHPVKAFIDSGAQTTIM-SAACA-ARV--NITRLIDTR---W--A----GIAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       148 ~~l~i~~~InG~~v~alVDTGAq~tii-s~~~A-~rl--gL~~~~d~r---~--~----g~a~gvG~~~~~g~i~~~~i~  214 (280)
                      ...++++.|+++++++++|||+..+-+ +..|. ..|  .-....+..   +  .    .+.+|-|+  ..|.+....+.
T Consensus        17 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~   94 (330)
T 1yg9_A           17 TQYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGS--AVGRGIEDSLT   94 (330)
T ss_dssp             TTSEEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEE--EEEEEEEEEEE
T ss_pred             CEEEEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCce--EEEEEEEEEEE
Confidence            457899999999999999999998876 44453 245  322222211   1  1    12345454  37888888999


Q ss_pred             ECCeEEE-eEEEEecC-------CCcccccchhh
Q psy8018         215 IENDFLT-TSFSVLED-------QPMDMLLGLDM  240 (280)
Q Consensus       215 IG~~~~~-~~~~Vl~~-------~~~d~ILG~D~  240 (280)
                      +|+..++ ..|.+...       ...|+||||-+
T Consensus        95 ig~~~~~~~~fg~~~~~~~~f~~~~~~GilGLg~  128 (330)
T 1yg9_A           95 ISQLTTSQQDIVLADELSQEVCILSADVVVGIAA  128 (330)
T ss_dssp             ETTEEEEEEEEEEEEEECTHHHHTTCSEEEECSC
T ss_pred             ECCEEEcCeEEEEEEEcccccccccCceEEEcCc
Confidence            9997655 45555442       24799999875

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=94.07  E-value=0.12  Score=38.50  Aligned_cols=56  Identities=9%  Similarity=0.182  Sum_probs=42.6

Q ss_pred             CCcEEEEEeCCC-ccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           9 DNECFLLDVSED-LELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         9 ~g~~~~leV~~~-~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+.  +++++. .||.+|.+.+    ++++..-.+..||..+..  ....+.-+++||.|.+..
T Consensus        26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~   82 (87)
T 1tyg_B           26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVH   82 (87)
T ss_dssp             TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEE
T ss_pred             CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEc
Confidence            5654  456776 8999998865    677777778899999863  345566799999999876

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=93.87  E-value=0.49  Score=42.66  Aligned_cols=91  Identities=15%  Similarity=0.321  Sum_probs=60.6

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH---HHcCCcccccc----ce------eeeeecCceeeEEeEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA---ARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMV  211 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A---~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~  211 (280)
                      ...++++.|+  ++++++++|||+..+.+. ..|.   ..|.-....+.    .+      -.+.+|-|+  ..|.+...
T Consensus        18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D   95 (341)
T 3k1w_A           18 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQD   95 (341)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEE
T ss_pred             CEEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE--EEEEEEEE
Confidence            4678999998  699999999999988873 3342   23422211111    11      123455554  68988888


Q ss_pred             EEEECCeEEEeEEEEecC--------CCcccccchhh
Q psy8018         212 QIAIENDFLTTSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       212 ~i~IG~~~~~~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+.+|+..+...|.+...        ...|+||||-+
T Consensus        96 ~v~ig~~~v~~~fg~~~~~~~~~~~~~~~~GilGLg~  132 (341)
T 3k1w_A           96 IITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGF  132 (341)
T ss_dssp             EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred             EEEECCceeeEEEEEEEEccccccccCCcceEEECCc
Confidence            999999766666666542        24689999875

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=93.67  E-value=0.24  Score=45.37  Aligned_cols=91  Identities=16%  Similarity=0.266  Sum_probs=60.8

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH--HHcCCccccccc----e------eeeeecCceeeEEeEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA--ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A--~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~  212 (280)
                      ...++++.|+  ++++++++|||+..+-+ +..|.  ..|.-....+..    +      -.+.+|-|+  ..|.+....
T Consensus        18 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~   95 (361)
T 1mpp_A           18 EEYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGG--ANGIYFRDS   95 (361)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred             CEEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCce--EEEEEEEEE
Confidence            4678999998  89999999999999877 44553  256433222211    1      113355555  578888889


Q ss_pred             EEECCeEEE-eEEEEec---C----------CCcccccchhh
Q psy8018         213 IAIENDFLT-TSFSVLE---D----------QPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~-~~~~Vl~---~----------~~~d~ILG~D~  240 (280)
                      +.+|+..++ ..|.+..   +          ...|+||||-+
T Consensus        96 v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~~~~~~GilGLg~  137 (361)
T 1mpp_A           96 ITVGGATVKQQTLAYVDNVSGPTAEQSPDSELFLDGIFGAAY  137 (361)
T ss_dssp             EEETTEEEEEEEEEEEEEEESGGGSSCTTCSSCCCEEEECSC
T ss_pred             EEECCEEEeceEEEEEEeccCccccccccccCCCCCEEEeCC
Confidence            999987654 3454443   1          25789999865

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=93.62  E-value=0.27  Score=44.95  Aligned_cols=92  Identities=17%  Similarity=0.281  Sum_probs=61.1

Q ss_pred             eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH-HHcCCccccccc----e------eeeeecCceeeEEeEEEEEE
Q psy8018         147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA-ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A-~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~  212 (280)
                      ....++++.|+  ++++++++|||+..+-+ +..|. ..|+-....+..    +      -.+.+|-|+  ..|.+....
T Consensus        22 ~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~   99 (351)
T 1tzs_A           22 DMEYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS--LSGIIGADQ   99 (351)
T ss_dssp             SSCCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE--EEEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC--eEEEEEEeE
Confidence            34678999998  79999999999999877 44443 245432222211    1      113456554  568888889


Q ss_pred             EEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         213 IAIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      +.+|+..++ ..|.+...        ...|+||||-+
T Consensus       100 v~ig~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~  136 (351)
T 1tzs_A          100 VSVEGLTVVGQQFGESVTEPGQTFVDAEFDGILGLGY  136 (351)
T ss_dssp             EEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred             EEECCeEECCeEEEEEEeccccccccCCCceEEecCC
Confidence            999997665 56666542        24689999864

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=93.51  E-value=0.28  Score=44.26  Aligned_cols=91  Identities=20%  Similarity=0.350  Sum_probs=59.3

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHHH-HcCCccccccc----e------eeeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACAA-RVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A~-rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  ++++++++|||+..+-+ +..|.. .|.-....+..    +      -.+.+|-|  ...|.+....+
T Consensus        13 ~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G--s~~G~~~~D~v   90 (329)
T 1dpj_A           13 AQYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTG--SLEGYISQDTL   90 (329)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE--EEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCc--eEEEEEEEEEE
Confidence            4578999998  89999999999998877 344432 23211111111    1      12345655  46788888899


Q ss_pred             EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+|+..++ ..|.+...        ...|+||||-+
T Consensus        91 ~ig~~~~~~~~fg~~~~~~~~~f~~~~~~GilGLg~  126 (329)
T 1dpj_A           91 SIGDLTIPKQDFAEATSEPGLTFAFGKFDGILGLGY  126 (329)
T ss_dssp             EETTEEEEEEEEEEEEECCHHHHTTCSCSEEEECSC
T ss_pred             EECCeEECCeEEEEEEecCccccccCCcceEEEeCC
Confidence            99987655 45555432        25799999865

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=93.47  E-value=0.22  Score=45.18  Aligned_cols=87  Identities=17%  Similarity=0.231  Sum_probs=57.7

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCCcccccccee----eeeecCceeeEEeEEEEEEEEECCeEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWA----GIAKGVGVQRIIGRIHMVQIAIENDFLT  221 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~----g~a~gvG~~~~~g~i~~~~i~IG~~~~~  221 (280)
                      ...++++.|+  ++++++++|||+..+-+...  ..+.-.  ......    .+.+|-|+  ..|.+....+.+|+..++
T Consensus        12 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s--~Ss~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~~g~~~v~   85 (340)
T 1wkr_A           12 VDYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKT--STSSATSDKVSVTYGSGS--FSGTEYTDTVTLGSLTIP   85 (340)
T ss_dssp             SCEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCC--TTCEEEEEEEEEECSSCE--EEEEEEEEEEEETTEEEE
T ss_pred             cEEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCCc--CCccccCceEEEEECCcE--EEEEEEEEEEEECCEEEc
Confidence            3578999998  89999999999999887521  112111  011111    23456664  569998889999987654


Q ss_pred             -eEEEEecC----CCcccccchhh
Q psy8018         222 -TSFSVLED----QPMDMLLGLDM  240 (280)
Q Consensus       222 -~~~~Vl~~----~~~d~ILG~D~  240 (280)
                       ..|.+...    ...|+||||-+
T Consensus        86 ~~~fg~~~~~~~~~~~~GilGLg~  109 (340)
T 1wkr_A           86 KQSIGVASRDSGFDGVDGILGVGP  109 (340)
T ss_dssp             EEEEEEEEEEESCTTCSEEEECSC
T ss_pred             ceEEEEEEccCCCcCCCcEEECCc
Confidence             45555442    25789999865

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=93.27  E-value=0.41  Score=43.15  Aligned_cols=92  Identities=14%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             eEEEEEEEEcCEEEEEEEcCCCcceecC-HHHHH-HcCCcccccc-----cee----eeeecCceeeEEeEEEEEEEEEC
Q psy8018         148 IMLYINCRVNGHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDT-----RWA----GIAKGVGVQRIIGRIHMVQIAIE  216 (280)
Q Consensus       148 ~~l~i~~~InG~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~-----r~~----g~a~gvG~~~~~g~i~~~~i~IG  216 (280)
                      ...++++.|+++++.+++|||++.+-+. ..|.. .|.-....+.     +..    .+.+|-|+ ...|.+....+.+|
T Consensus        15 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~ig   93 (323)
T 1bxo_A           15 EEYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGS-SASGNVFTDSVTVG   93 (323)
T ss_dssp             SCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSC-EEEEEEEEEEEEET
T ss_pred             CEEEEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCC-eEEEEEEEEEEEEC
Confidence            4578999999999999999999998874 33321 1211111111     001    13345443 45788888899999


Q ss_pred             CeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         217 NDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       217 ~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      +..++ ..|.+...        ...|+||||-+
T Consensus        94 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  126 (323)
T 1bxo_A           94 GVTAHGQAVQAAQQISAQFQQDTNNDGLLGLAF  126 (323)
T ss_dssp             TEEEEEEEEEEEEEECHHHHTCTTCSEEEECSC
T ss_pred             CEEECcEEEEEEEecCcccccCCCCceEEEeCc
Confidence            87654 45555442        36799999866

>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.10  E-value=0.18  Score=37.51  Aligned_cols=62  Identities=13%  Similarity=0.179  Sum_probs=52.6

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC---CeeeCCCcCCccccCCCC
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ---GNALVDNKKTLKDYNIQD   64 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~---Gk~L~d~~~tL~~~gI~~   64 (280)
                      ++.|....-+.+.+-|+|..++.+|--.|-+++.+.++.-.|...   +.+|. -+++|.+|||++
T Consensus        12 RLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~Ld-LskSLndlgirE   76 (91)
T 2daj_A           12 RVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLD-LTKSLNDLGLRE   76 (91)
T ss_dssp             EEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCC-TTSCHHHHTCSE
T ss_pred             EEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccc-hhcchhhhhhhh
Confidence            456667777888899999999999999999999999999998753   45564 458999999998

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=93.09  E-value=0.47  Score=42.81  Aligned_cols=93  Identities=15%  Similarity=0.149  Sum_probs=59.8

Q ss_pred             eeEEEEEEEEcCEEEEEEEcCCCcceecC-HHHHH-HcCCcccccc-----ceee----eeecCceeeEEeEEEEEEEEE
Q psy8018         147 VIMLYINCRVNGHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDT-----RWAG----IAKGVGVQRIIGRIHMVQIAI  215 (280)
Q Consensus       147 ~~~l~i~~~InG~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~-----r~~g----~a~gvG~~~~~g~i~~~~i~I  215 (280)
                      ....++++.|+++++++++|||+..+-+. ..|.. .|.-....+.     +..+    +.+|-|+ ...|.+....+.+
T Consensus        14 ~~~Y~~~i~iG~q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~i   92 (323)
T 1izd_A           14 DEEYITQVTVGDDTLGLDFDTGSADLWVFSSQTPSSERSGHDYYTPGSSAQKIDGATWSISYGDGS-SASGDVYKDKVTV   92 (323)
T ss_dssp             GCCEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTCCCBCCCTTCEEEEEEEEEEECTTSC-EEEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCEEEEEEEcCCCcceEEecCCCCcccccCCCCCCccccCCccCCCeEEEEcCCCC-eEEEEEEEEEEEE
Confidence            35678999999999999999999998874 33321 1211111111     1111    2345443 3578888889999


Q ss_pred             CCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         216 ENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       216 G~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      |+..++ ..|.+...        ...|+||||-+
T Consensus        93 g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  126 (323)
T 1izd_A           93 GGVSYDSQAVESAEKVSSEFTQDTANDGLLGLAF  126 (323)
T ss_dssp             TTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred             CCEEECceEEEEEEeccccccccCCCceEEecCc
Confidence            987665 45555542        36799999876

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=93.07  E-value=0.21  Score=34.70  Aligned_cols=61  Identities=13%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|   +|+.  +++++..||.+|.+.+    ++++..-.+..||+.+..  ....+.-+++||.|.+..
T Consensus         1 m~i~v---Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~   61 (66)
T 1f0z_A            1 MQILF---NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQ   61 (66)
T ss_dssp             CCEEE---SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEE
T ss_pred             CEEEE---CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEe
Confidence            66665   5554  4667888999998876    567777778889999863  234445799999998876

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=93.04  E-value=0.48  Score=42.71  Aligned_cols=92  Identities=13%  Similarity=0.276  Sum_probs=60.1

Q ss_pred             eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH-HHcCCccccccc----e--e----eeeecCceeeEEeEEEEEE
Q psy8018         147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA-ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A-~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~  212 (280)
                      ....++++.|+  ++++++++|||+..+-+ +..|. ..|+-....+..    +  .    .+.+|-|+  ..|.+....
T Consensus        11 ~~~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~   88 (329)
T 1htr_B           11 DAAYFGEISIGTPPQNFLVLFDTGSSNLWVPSVYCQSQACTSHSRFNPSESSTYSTNGQTFSLQYGSGS--LTGFFGYDT   88 (329)
T ss_dssp             TCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCCCCcCCCccCCCeEECCcEEEEEeCCCC--eEEEEEeee
Confidence            35678999998  79999999999998877 34442 123221111111    1  1    13355554  378888889


Q ss_pred             EEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         213 IAIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      +.+|+..++ ..|.+...        ...|+||||-+
T Consensus        89 v~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~  125 (329)
T 1htr_B           89 LTVQSIQVPNQEFGLSENEPGTNFVYAQFDGIMGLAY  125 (329)
T ss_dssp             EEETTEEEEEEEEEEESSCSSGGGGGCSCCEEEECCC
T ss_pred             EEEcceEECceEEEEEEEccccccccCCCceEEecCC
Confidence            999997665 56666642        24689999864

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=92.79  E-value=0.69  Score=41.36  Aligned_cols=91  Identities=14%  Similarity=0.239  Sum_probs=58.9

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCcccccc----ce------eeeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  .+++++++|||+..+.+. ..|. ..|.-....+.    .+      -.+.+|-|+  ..|.+....+
T Consensus        11 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~v   88 (320)
T 4aa9_A           11 SQYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS--MEGFLGYDTV   88 (320)
T ss_dssp             CCCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE--EEEEEEEEEE
Confidence            4578999998  799999999999988884 3332 12221111111    11      113455554  5788888899


Q ss_pred             EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+|+..++ ..|.+...        ...|+||||-+
T Consensus        89 ~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  124 (320)
T 4aa9_A           89 TVSNIVDPNQTVGLSTEQPGEVFTYSEFDGILGLAY  124 (320)
T ss_dssp             EETTEEEEEEEEEEEEECCSHHHHSCCCSEEEECSC
T ss_pred             EECCEeecCeEEEEEEEcccccccccCcccEEecCc
Confidence            99997665 45655542        24689999964

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=92.73  E-value=0.53  Score=43.47  Aligned_cols=92  Identities=16%  Similarity=0.300  Sum_probs=61.0

Q ss_pred             eeEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHH-HcCCccccccc----e--e----eeeecCceeeEEeEEEEEE
Q psy8018         147 VIMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       147 ~~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~  212 (280)
                      ....++++.|+  .+++++++|||++.+-+. ..|.. .|......+..    +  .    .+.+|-|+  ..|.+....
T Consensus        55 d~~Y~~~i~iGTPpQ~~~v~~DTGSs~lWV~s~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt  132 (370)
T 3psg_A           55 DTEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS--MTGILGYDT  132 (370)
T ss_dssp             TCCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE--EEEEEEEEE
T ss_pred             CCEEEEEEEEcCCCCEEEEEEeCCCCccEEECCCCCCcccCCCCCCCCccCcCcEECCcEEEEEeCCce--EEEEEEEEE
Confidence            45689999998  589999999999988774 33421 23322222111    1  1    13355554  588888889


Q ss_pred             EEECCeEEE-eEEEEecCC--------Ccccccchhh
Q psy8018         213 IAIENDFLT-TSFSVLEDQ--------PMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~-~~~~Vl~~~--------~~d~ILG~D~  240 (280)
                      +.+|+..++ ..|.+....        ..|+||||-+
T Consensus       133 v~ig~~~v~~~~Fg~a~~~~~~~~~~~~~dGIlGLg~  169 (370)
T 3psg_A          133 VQVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY  169 (370)
T ss_dssp             EEETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred             EeeCCcccCCeEEEEEEeecccccccCCccceeccCC
Confidence            999998766 566665422        4799999964

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=92.65  E-value=0.35  Score=43.68  Aligned_cols=92  Identities=14%  Similarity=0.098  Sum_probs=58.6

Q ss_pred             eEEEEEEEEcCEEEEEEEcCCCcceecC-HHHHH-HcCCccccccc---------eeeeeecCceeeEEeEEEEEEEEEC
Q psy8018         148 IMLYINCRVNGHPVKAFIDSGAQTTIMS-AACAA-RVNITRLIDTR---------WAGIAKGVGVQRIIGRIHMVQIAIE  216 (280)
Q Consensus       148 ~~l~i~~~InG~~v~alVDTGAq~tiis-~~~A~-rlgL~~~~d~r---------~~g~a~gvG~~~~~g~i~~~~i~IG  216 (280)
                      ...++++.|+++++++++|||+..+-+. ..|.. .|.-....+..         .-.+.+|-|+ ...|.+....+.+|
T Consensus        14 ~~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~ig   92 (325)
T 1ibq_A           14 EEYLTPVTVGKSTLHLDFDTGSADLWVFSDELPSSEQTGHDLYTPSSSATKLSGYSWDISYGDGS-SASGDVYRDTVTVG   92 (325)
T ss_dssp             SCEEEEEEEBTEEEEEEEETTCCCEEEECTTSCHHHHTTSCCCBCCSSCEECTTCBEEEECSSSC-EEEEEEEEEEEEET
T ss_pred             CEEEEEEEECCEEEEEEEeCCCccceEeeCCCCccccCCCCCCCchhcCCccCCCEEEEEeCCCC-EEEEEEEEeEEEEC
Confidence            4578999999999999999999998774 33321 12111111110         0123345443 35788888899999


Q ss_pred             CeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         217 NDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       217 ~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      +..++ ..|.+...        ...|+||||-+
T Consensus        93 ~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  125 (325)
T 1ibq_A           93 GVTTNKQAVEAASKISSEFVQDTANDGLLGLAF  125 (325)
T ss_dssp             TEEEEEEEEEEEEEECHHHHTSTTCCEEEECSC
T ss_pred             CEEEcceEEEEEEecCccccccCCCceEEEeCc
Confidence            87655 45555432        36799999865

>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*

Probab=92.39  E-value=0.78  Score=43.80  Aligned_cols=103  Identities=7%  Similarity=0.066  Sum_probs=62.1

Q ss_pred             EEEcCE---EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCcee--eE-EeEEEEEEEEECCeEEE------
Q psy8018         154 CRVNGH---PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ--RI-IGRIHMVQIAIENDFLT------  221 (280)
Q Consensus       154 ~~InG~---~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~--~~-~g~i~~~~i~IG~~~~~------  221 (280)
                      +.|+|.   ...|+||||.+.+.++.+.++++-=.  +...+.   ...|.-  .. ........+.+|+..++      
T Consensus       322 I~Vgg~~~~~~~aiiDSGTt~i~lP~~~~~~i~~~--i~a~~~---~~~g~y~v~C~~~~~P~itf~fgg~~i~lp~~~y  396 (451)
T 3qvc_A          322 VHFGNVSSKKANVILDSATSVITVPTEFFNQFVES--ASVFKV---PFLSLYVTTCGNTKLPTLEYRSPNKVYTLEPKQY  396 (451)
T ss_dssp             EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHTT--TTCEEC---TTSSCEEEETTCTTCCCEEEEETTEEEEECHHHH
T ss_pred             EEECCccCCCceEEEeCCCccccCCHHHHHHHHHH--cCCeec---CCCCeEEeeCCcCcCCcEEEEECCEEEEEcHHHh
Confidence            567774   57799999999999999988876211  110000   000100  00 00112234555654332      


Q ss_pred             -----------eEEEEecCC--CcccccchhhhhcceEEEEecccEEEeeeee
Q psy8018         222 -----------TSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDFLTTSFSV  261 (280)
Q Consensus       222 -----------~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~  261 (280)
                                 |-+.+....  ....|||..||+.+-.+.|+.++++-+...+
T Consensus       397 i~~~~~~~~~~C~~~i~~~~~~~~~~ILG~~FLr~~YvVfD~~n~rIGfA~ak  449 (451)
T 3qvc_A          397 LEPLENIFSALCMLNIVPIDLEKNTFVLGDPFMRKYFTVYDYDNHTVGFALAK  449 (451)
T ss_dssp             EEECTTTSTTEEEECEEECCCSTTEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             eeecccCCCCeEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence                       322232222  2458999999999999999999999987653

>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2

Probab=92.39  E-value=0.53  Score=45.29  Aligned_cols=92  Identities=18%  Similarity=0.287  Sum_probs=60.4

Q ss_pred             eeEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH--HHcCCccccccc----e------eeeeecCceeeEEeEEEEE
Q psy8018         147 VIMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA--ARVNITRLIDTR----W------AGIAKGVGVQRIIGRIHMV  211 (280)
Q Consensus       147 ~~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A--~rlgL~~~~d~r----~------~g~a~gvG~~~~~g~i~~~  211 (280)
                      ....++++.|+  ++++.+++|||++.+-+ +..|.  ..|......+..    +      -.+.+|-|+  ..|.+...
T Consensus        51 ~~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D  128 (478)
T 1qdm_A           51 NAQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS--IAGYFSED  128 (478)
T ss_dssp             GCCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEE--EEEEEEEE
T ss_pred             CCEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCC--eEEEEEEE
Confidence            35688999998  79999999999998877 44453  344322111111    1      123456554  57888888


Q ss_pred             EEEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         212 QIAIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       212 ~i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+.+|+..++ ..|.+...        ...|+||||-+
T Consensus       129 tv~ig~~~v~~~~Fg~a~~~~~~~f~~~~~dGIlGLg~  166 (478)
T 1qdm_A          129 SVTVGDLVVKDQEFIEATKEPGITFLVAKFDGILGLGF  166 (478)
T ss_dssp             EEEETTEEEEEEEEEEEEECCBSHHHHCSSSEEEECSC
T ss_pred             EEEECCeEECCEEEEEEEecCCcccccccccceecccc
Confidence            9999997655 34544431        24699999865

>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A

Probab=92.33  E-value=0.57  Score=37.85  Aligned_cols=64  Identities=23%  Similarity=0.329  Sum_probs=47.4

Q ss_pred             cEEEEEeCCCccHHHHHHHHHHHh--CCCC------cceEEEE----CCee-eCCCc------------CCccccCCCCC
Q psy8018          11 ECFLLDVSEDLELENFKAFCEVQS--GISA------QEIAIEF----QGNA-LVDNK------------KTLKDYNIQDG   65 (280)
Q Consensus        11 ~~~~leV~~~~tV~~LK~~Ie~e~--gip~------~~Q~Li~----~Gk~-L~d~~------------~tL~~~gI~~g   65 (280)
                      +.+++.|-..+||.++|++|-...  |.|.      ++.-|-+    .|+. |.|.+            .||+.|+|.||
T Consensus        41 ~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~Dg  120 (138)
T 2r2o_A           41 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  120 (138)
T ss_dssp             CCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCTT
T ss_pred             CceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCCC
Confidence            568899999999999999997763  5544      3455654    3443 65421            28999999999


Q ss_pred             CEEEEEEec
Q psy8018          66 DLVLLKRVQ   74 (280)
Q Consensus        66 d~l~l~~~~   74 (280)
                      .+|.|+.++
T Consensus       121 a~l~l~~~~  129 (138)
T 2r2o_A          121 ATVALVPCL  129 (138)
T ss_dssp             CEEEEEEC-
T ss_pred             CEEEEEECC
Confidence            999998874

>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}

Probab=92.16  E-value=0.12  Score=39.22  Aligned_cols=63  Identities=19%  Similarity=0.235  Sum_probs=40.6

Q ss_pred             EEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeee--eecCceeeEEeEEEEEEEEECCeEEEeE
Q psy8018         152 INCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGI--AKGVGVQRIIGRIHMVQIAIENDFLTTS  223 (280)
Q Consensus       152 i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~--a~gvG~~~~~g~i~~~~i~IG~~~~~~~  223 (280)
                      +.++|-|...++.-||||+.|+|...+-+        +....|.  ..-+-+. ..-.+.-..++|.|+.+.+.
T Consensus        10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~--------~E~PI~~~~I~TIHG~-k~q~vYYl~fKv~GRKveaE   74 (107)
T 2jys_A           10 LEAEIKGTKLKAHWDSGATITCVPEAFLE--------DERPIQTMLIKTIHGE-KQQDVYYLTFKVQGRKVEAE   74 (107)
T ss_dssp             EEEEETTEEEEEEECTTCSSEEEEGGGTT--------TCCCSEEEEEECSSCE-EEEEEEEEEEEESSCEEEEE
T ss_pred             eeEEEeCcEEEEEecCCCeEEEcchHHhc--------ccccccceEEEEecCc-eeceEEEEEEEEcCeEEEEE
Confidence            78999999999999999999999988733        2222121  1112111 12223344788888776653

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=92.15  E-value=0.72  Score=32.63  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=44.0

Q ss_pred             CEEEEEcC---CCcEEEEEeCCCccHHHHHHHHHHHhCCCC--cceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSL---DNECFLLDVSEDLELENFKAFCEVQSGISA--QEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~---~g~~~~leV~~~~tV~~LK~~Ie~e~gip~--~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|+..   ..  -++++ +..||.+|.+.+....++..  ..-.+.-||+.+.+.     +.-+++||.|.+..
T Consensus         1 M~v~V~~fa~l~~--~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~-----~~~l~~gDeV~i~P   69 (74)
T 3rpf_C            1 MMVEVRFFGPIKE--ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL-----NTPLKDGDVISLLP   69 (74)
T ss_dssp             CEEEEEECTTCCC--CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT-----TCCCCTTCEEEEEC
T ss_pred             CEEEEEEEeecce--eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC-----CcCCCCCCEEEEEC
Confidence            88999842   23  34677 66899999999986543322  344566789886532     34599999998865

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=92.09  E-value=0.49  Score=42.72  Aligned_cols=90  Identities=11%  Similarity=0.101  Sum_probs=58.3

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCH-HHHHHc---CCcccccc-----------ceeeeeecCceeeEEeEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA-ACAARV---NITRLIDT-----------RWAGIAKGVGVQRIIGRIHM  210 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~-~~A~rl---gL~~~~d~-----------r~~g~a~gvG~~~~~g~i~~  210 (280)
                      ...++++.|+  ++++++++|||+..+-+.. .|. .|   +.... +.           ..-.+.+|-|+ ...|.+..
T Consensus        15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~~~~~~y-~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~   91 (329)
T 3c9x_A           15 SEYITSVSIGTPAQVLPLDFDTGSSDLWVFSSETP-KSSATGHAIY-TPSKSSTSKKVSGASWSISYGDGS-SSSGDVYT   91 (329)
T ss_dssp             CCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-HHHHTTSCCB-CGGGCTTCEECTTCBEEEECTTSC-EEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEcCCCCCeEEecCCCC-ccccCCCCcC-CcccCcCceEcCCCeEEEEeCCCC-cEEEEEEE
Confidence            4578999998  9999999999999988753 332 12   11111 11           00123345443 35788888


Q ss_pred             EEEEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         211 VQIAIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       211 ~~i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      ..+.+|+..++ ..|.+...        ...|+||||-+
T Consensus        92 D~v~ig~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  130 (329)
T 3c9x_A           92 DKVTIGGFSVNTQGVESATRVSTEFVQDTVISGLVGLAF  130 (329)
T ss_dssp             EEEEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred             EEEEECCEEEcceEEEEEEecCccccccCCCceeEEeCc
Confidence            89999987654 35555431        46799999865

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=92.07  E-value=0.72  Score=41.63  Aligned_cols=91  Identities=16%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCH-HHHHHc--CCccccc---cce---ee----eeecCceeeEEeEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA-ACAARV--NITRLID---TRW---AG----IAKGVGVQRIIGRIHMVQ  212 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~-~~A~rl--gL~~~~d---~r~---~g----~a~gvG~~~~~g~i~~~~  212 (280)
                      ...++++.|+  ++++.+++|||+..+-+.. .|. .|  +-...-.   ..+   .+    +.+|-|+ ...|.+....
T Consensus        15 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~-~~~~~~~~y~~~~SsT~~~~~~~~~~i~Yg~Gs-~~~G~~~~D~   92 (329)
T 1oew_A           15 DAYITPVQIGTPAQTLNLDFDTGSSDLWVFSSETT-ASEVXQTIYTPSKSTTAKLLSGATWSISYGDGS-SSSGDVYTDT   92 (329)
T ss_dssp             CCEEEEEEETTTTEEEEEEEETTCCCEEECBTTSC-GGGC-CCCBCGGGCTTCEEEEEEEEEEECTTSC-EEEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEECCCCCCeEEecCCCC-ccccccCccCCccCccceecCCCeEEEEeCCCC-cEEEEEEEEE
Confidence            4578999998  9999999999999988753 332 23  1111110   101   11    2344443 4578888889


Q ss_pred             EEECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         213 IAIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       213 i~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      +.+|+..++ ..|.+...        ...|+||||-+
T Consensus        93 v~~g~~~v~~~~fg~~~~~~~~~~~~~~~~GilGLg~  129 (329)
T 1oew_A           93 VSVGGLTVTGQAVESAKKVSSSFTEDSTIDGLLGLAF  129 (329)
T ss_dssp             EEETTEEEEEEEEEEEEEECHHHHHCTTCCEEEECSC
T ss_pred             EEECCEEEeeeEEEEEEecCccccccCCCceEEEecc
Confidence            999987655 45555431        46799999865

>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A

Probab=92.00  E-value=0.52  Score=42.39  Aligned_cols=102  Identities=11%  Similarity=0.153  Sum_probs=59.7

Q ss_pred             EEEEcCEEE------EEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018         153 NCRVNGHPV------KAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-  221 (280)
Q Consensus       153 ~~~InG~~v------~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-  221 (280)
                      .+.|||..+      .++||||.+.+.++.+.++++    +-.......+   ...-...   .......+.+|+..+. 
T Consensus       197 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~---~~~C~~~---~~~P~i~f~f~g~~~~i  270 (323)
T 3cms_A          197 SVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNIQQAIGATQNQYGEF---DIDCDNL---SYMPTVVFEINGKMYPL  270 (323)
T ss_dssp             EEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHHHHHHTCEEETTTEE---EECTTCT---TTSCCEEEEETTEEEEE
T ss_pred             eEEECCEEeecCCCcEEEEecCCccEeCCHHHHHHHHHHhCCeecCCCcE---EEECCCC---ccCceEEEEECCEEEEE
Confidence            456788754      699999999999998877765    2211000000   0000000   0011234455554332 


Q ss_pred             ------------eEEEEecC-CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ------------TSFSVLED-QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ------------~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                  |-+.+... .....|||..||+.+-++.|+.+++|-|...
T Consensus       271 ~~~~y~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~  322 (323)
T 3cms_A          271 TPSAYTSQDQGFCTSGFQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKA  322 (323)
T ss_dssp             CHHHHEEEETTEEEESEEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             CHHHhccCCCCEEEEEEEeCCCCCcEEECHHHhhceEEEEECCCCEEEEEEC
Confidence                        33223222 2345899999999999999999999988754

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=91.97  E-value=0.33  Score=43.83  Aligned_cols=92  Identities=14%  Similarity=0.180  Sum_probs=60.5

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCHH---HHH--HcCCccccccc----e--e----eeeecCceeeEEeEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAA---CAA--RVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHM  210 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~---~A~--rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~  210 (280)
                      ...++++.|+  ++++++++|||+..+-+...   |..  .|.-....+..    +  .    .+.+|-| ....|.+..
T Consensus        12 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~~G~~~~   90 (339)
T 3fv3_A           12 PSYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDG-STSQGTWGK   90 (339)
T ss_dssp             SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEE
T ss_pred             CEEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCC-ceEEEEEEE
Confidence            4578999998  89999999999999888532   432  23221111111    1  1    1234444 356888888


Q ss_pred             EEEEECCeEEE-eEEEEec-CCCcccccchhh
Q psy8018         211 VQIAIENDFLT-TSFSVLE-DQPMDMLLGLDM  240 (280)
Q Consensus       211 ~~i~IG~~~~~-~~~~Vl~-~~~~d~ILG~D~  240 (280)
                      ..+.+|+..++ ..|.+.. ....|+||||-+
T Consensus        91 D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~  122 (339)
T 3fv3_A           91 DTVTINGVSITGQQIADVTQTSVDQGILGIGY  122 (339)
T ss_dssp             EEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred             EEEEECCEEECceEEEEEEecCCCceeEEecC
Confidence            89999998766 5666654 235789999865

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=91.92  E-value=0.38  Score=43.43  Aligned_cols=92  Identities=12%  Similarity=0.188  Sum_probs=60.2

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCHH---HH--------HHcCCccccccc----e--e----eeeecCceeeE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAA---CA--------ARVNITRLIDTR----W--A----GIAKGVGVQRI  204 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~---~A--------~rlgL~~~~d~r----~--~----g~a~gvG~~~~  204 (280)
                      ...++++.|+  ++++++++|||+..+-+...   |.        ..|.-....+..    +  .    .+.+|-| ...
T Consensus        12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~   90 (342)
T 3pvk_A           12 VTYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDG-SSS   90 (342)
T ss_dssp             SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSS-CEE
T ss_pred             cEEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCC-CeE
Confidence            4578999998  89999999999999887422   41        233211111111    1  1    1234444 346


Q ss_pred             EeEEEEEEEEECCeEEE-eEEEEec-CCCcccccchhh
Q psy8018         205 IGRIHMVQIAIENDFLT-TSFSVLE-DQPMDMLLGLDM  240 (280)
Q Consensus       205 ~g~i~~~~i~IG~~~~~-~~~~Vl~-~~~~d~ILG~D~  240 (280)
                      .|.+....+.+|+..++ ..|.+.. ....|+||||-+
T Consensus        91 ~G~~~~D~v~ig~~~v~~~~fg~~~~~~~~~GilGLg~  128 (342)
T 3pvk_A           91 QGTLYKDTVGFGGVSIKNQVLADVDSTSIDQGILGVGY  128 (342)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred             EEEEEEEEEEECCEEecceEEEEEEccCCCccEEEecC
Confidence            78888889999997765 5666655 236799999975

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=91.86  E-value=0.65  Score=41.83  Aligned_cols=91  Identities=19%  Similarity=0.334  Sum_probs=57.8

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHc-CCccccccc----e--e----eeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARV-NITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rl-gL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  ++++.+++|||+..+-+. ..|. .| .-....+..    +  .    .+.+|-| ....|.+....+
T Consensus        15 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~-~c~~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~~G~~~~D~v   92 (325)
T 2apr_A           15 IEYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCT-NCGSGQTKYDPNQSSTYQADGRTWSISYGDG-SSASGILAKDNV   92 (325)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCS-SCCTTSCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEcCCCCCEEEccCCCc-hHhcCCCCCCcccCCCeeeCCCEEEEEECCC-CCEEEEEEEEEE
Confidence            4578999999  999999999999998774 3342 23 111111111    1  1    1234444 345788888899


Q ss_pred             EECCeEEE-eEEEEecC-------CCcccccchhh
Q psy8018         214 AIENDFLT-TSFSVLED-------QPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~-~~~~Vl~~-------~~~d~ILG~D~  240 (280)
                      .+|+..++ ..|.+...       ...|+||||-+
T Consensus        93 ~~g~~~v~~~~fg~~~~~~~~f~~~~~~GilGLg~  127 (325)
T 2apr_A           93 NLGGLLIKGQTIELAKREAASFASGPNDGLLGLGF  127 (325)
T ss_dssp             EETTEEEEEEEEEEEEEECHHHHTSSCSEEEECSC
T ss_pred             EECCEEECcEEEEEEeccCcccccCCCceEEEeCC
Confidence            99987654 34544431       23899999864

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=91.71  E-value=0.42  Score=42.98  Aligned_cols=91  Identities=16%  Similarity=0.284  Sum_probs=58.2

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHH-HHcCCccccccc----e--e----eeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACA-ARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A-~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  ++++.+++|||+..+-+. ..|. ..|.-....+..    +  .    .+.+|-|+.  .|.+....+
T Consensus        12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~--~G~~~~D~v   89 (324)
T 1am5_A           12 TEYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGGM--RGILGQDTV   89 (324)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCEE--EEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCCe--EEEEEECce
Confidence            4678999997  699999999999998774 3342 123221111111    1  1    133555543  788888899


Q ss_pred             EECCeEEE-eEEEEecC--------CCcccccchhh
Q psy8018         214 AIENDFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      .+|+..++ ..|.+...        ...|+||||-+
T Consensus        90 ~~g~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~  125 (324)
T 1am5_A           90 SVGGGSDPNQELGESQTEPGPFQAAAPFDGILGLAY  125 (324)
T ss_dssp             ESSSSCEEEEEEEEEEECCSTTTTTCSSSEEEECSC
T ss_pred             eECCcEEcccEEEEEEecccccccCCCCceEEecCC
Confidence            99986554 45555432        25789999865

>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A

Probab=91.68  E-value=0.57  Score=41.91  Aligned_cols=101  Identities=12%  Similarity=0.112  Sum_probs=59.3

Q ss_pred             EEEcCEE------EEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE--
Q psy8018         154 CRVNGHP------VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT--  221 (280)
Q Consensus       154 ~~InG~~------v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~--  221 (280)
                      +.|||..      ..++||||.+.+.++.+.++++    +........+   ...-...   .......+.+|+..+.  
T Consensus       195 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~~~g~~---~~~C~~~---~~~p~i~f~f~g~~~~l~  268 (320)
T 4aa9_A          195 VTINGVAVACVGGCQAILDTGTSVLFGPSSDILKIQMAIGATENRYGEF---DVNCGNL---RSMPTVVFEINGRDYPLS  268 (320)
T ss_dssp             EEETTEEEESTTCEEEEECTTCSSEEEEHHHHHHHHHHTTCEECTTSCE---EECGGGG---GGCCCEEEEETTEEEEEC
T ss_pred             EEECCEEeccCCCcEEEEECCCCcEECCHHHHHHHHHHhCCcccCCCcE---EEeCCCC---CcCceEEEEECCEEEEEC
Confidence            5678864      4699999999999998877765    2211000000   0000000   0011234445554322  


Q ss_pred             -----------eEEEEec-CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 -----------TSFSVLE-DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 -----------~~~~Vl~-~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                 |-+.+.. ..+...|||..||+.+-.+.|+.++++-|...
T Consensus       269 ~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~a  319 (320)
T 4aa9_A          269 PSAYTSKDQGFCTSGFQGDNNSELWILGDVFIREYYSVFDRANNRVGLAKA  319 (320)
T ss_dssp             HHHHEEEETTEEEESEEEETTCCCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             HHHhccCCCCeEEEEEEcCCCCCcEEEChHHhcceEEEEECCCCEEEEEec
Confidence                       3332332 22334899999999999999999999988754

>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*

Probab=91.50  E-value=0.7  Score=39.60  Aligned_cols=103  Identities=10%  Similarity=0.026  Sum_probs=58.3

Q ss_pred             EEEEcCEE------EEEEEcCCCcceecCHHHHHHcCCccccccce--eee-eecCceeeEEeEEEEEEEEECCeEE---
Q psy8018         153 NCRVNGHP------VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGI-AKGVGVQRIIGRIHMVQIAIENDFL---  220 (280)
Q Consensus       153 ~~~InG~~------v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~-a~gvG~~~~~g~i~~~~i~IG~~~~---  220 (280)
                      .+.|||..      ..+++|||.+.+.++.+.++++-=  .+....  .|. .......   .......+.+|+..+   
T Consensus       107 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~--~~~~~~~~~g~~~~~C~~~---~~~p~i~f~f~g~~~~l~  181 (241)
T 1lya_B          107 QVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVRELQK--AIGAVPLIQGEYMIPCEKV---STLPAITLKLGGKGYKLS  181 (241)
T ss_dssp             EEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHHHH--HHTCEEEETTEEEEEGGGG---GGSCCEEEEETTEEEEEC
T ss_pred             EEEECCeeEeccCCCEEEEECCCccccCCHHHHHHHHH--HhCCeeccCCcEEEECCCC---ccCCeEEEEECCEEEEEC
Confidence            35577754      479999999999999988776511  011110  000 0000000   001112333443222   


Q ss_pred             --------------EeEEEEecC-----CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         221 --------------TTSFSVLED-----QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       221 --------------~~~~~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                    .|-+.+...     .....|||-.||+.+-.+.|+.++++-|...
T Consensus       182 ~~~y~~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfA~~  240 (241)
T 1lya_B          182 PEDYTLKVSQAGKTLCLSGFMGMDIPPPSGPLWILGDVFIGRYYTVFDRDNNRVGFAEA  240 (241)
T ss_dssp             TTTSEEEETTTTSSEEEESEEECCCCTTTCCCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             HHHhEEEccCCCCCeeEEEEEecccCCCCCCeEEechHHhcceEEEEECCCCEEEEEEc
Confidence                          133222221     2345899999999999999999999988754

>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*

Probab=91.05  E-value=0.43  Score=43.18  Aligned_cols=102  Identities=14%  Similarity=0.117  Sum_probs=60.8

Q ss_pred             EEEcCEE-----EEEEEcCCCcceecCHHHHHHcCCccccccce--ee---e-eecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018         154 CRVNGHP-----VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AG---I-AKGVGVQRIIGRIHMVQIAIENDFLT-  221 (280)
Q Consensus       154 ~~InG~~-----v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g---~-a~gvG~~~~~g~i~~~~i~IG~~~~~-  221 (280)
                      +.|+|..     ..|+||||.+.+.++.+.++++--.  +....  .|   . ...-..   ........+.+|+..++ 
T Consensus       202 i~v~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~--~~~~~~~~g~~~~~~~~C~~---~~~~p~i~f~fgg~~~~l  276 (330)
T 1yg9_A          202 VKIGDTTVAPAGTQAIIDTSKAIIVGPKAYVNPINEA--IGCVVEKTTTRRICKLDCSK---IPSLPDVTFVINGRNFNI  276 (330)
T ss_dssp             EEETTEEEECTTCEEEECTTCSSEEEEHHHHHHHHHH--HTCEEEECSSCEEEEECGGG---GGGSCCEEEEETTEEEEE
T ss_pred             EEECCEEEcCCCcEEEEecCCccccCCHHHHHHHHHH--hCCcccCCCceEEEEEECCC---ccccCcEEEEECCEEEEE
Confidence            5678875     4699999999999999887765210  11110  01   0 000000   00012234555654332 


Q ss_pred             ------------eEEEEec-CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ------------TSFSVLE-DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ------------~~~~Vl~-~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                  |-+.+.. ......|||-.||+.+-.+.|+.+++|-|...
T Consensus       277 ~~~~y~~~~~~~C~~~i~~~~~~~~~ilG~~fl~~~y~vfD~~~~riGfA~~  328 (330)
T 1yg9_A          277 SSQYYIQQNGNLCYSGFQPCGHSDHFFIGDFFVDHYYSEFNWENKTMGFGRS  328 (330)
T ss_dssp             CHHHHEEEETTEEEESEEEETTCSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             CHHHhcccCCCcEEEEEEeCCCCCeEEecHHHhhheEEEEECCCCEEEEEEC
Confidence                        3333322 12345899999999999999999999988765

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=91.04  E-value=1.2  Score=33.29  Aligned_cols=66  Identities=17%  Similarity=0.216  Sum_probs=46.0

Q ss_pred             CEEEEEc-------CCCcEEEEEeCCCccHHHHHHHHHHHhC-C----------CCcceEEEECCeeeCCCcCCccccCC
Q psy8018           1 MKVTVTS-------LDNECFLLDVSEDLELENFKAFCEVQSG-I----------SAQEIAIEFQGNALVDNKKTLKDYNI   62 (280)
Q Consensus         1 M~ItV~~-------~~g~~~~leV~~~~tV~~LK~~Ie~e~g-i----------p~~~Q~Li~~Gk~L~d~~~tL~~~gI   62 (280)
                      |+|+|+.       .+....++++++..||.+|.+.+..... +          ....-.+..||+....      ++-+
T Consensus        10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------~~~L   83 (98)
T 1vjk_A           10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------DEEL   83 (98)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------TCBC
T ss_pred             EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC------CCCC
Confidence            6788872       2234668899888999999999887631 1          1233456678887753      3469


Q ss_pred             CCCCEEEEEE
Q psy8018          63 QDGDLVLLKR   72 (280)
Q Consensus        63 ~~gd~l~l~~   72 (280)
                      ++||.|.+..
T Consensus        84 ~dGDeV~i~p   93 (98)
T 1vjk_A           84 KDGDVVGVFP   93 (98)
T ss_dssp             CTTCEEEEES
T ss_pred             CCCCEEEEEC
Confidence            9999998864

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=90.96  E-value=0.43  Score=43.17  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=59.6

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCH---HHHH--------HcCCccccccc----e--e----eeeecCceeeE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA---ACAA--------RVNITRLIDTR----W--A----GIAKGVGVQRI  204 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~---~~A~--------rlgL~~~~d~r----~--~----g~a~gvG~~~~  204 (280)
                      ...++++.|+  ++++++++|||+..+-+..   .|..        .|.-....+..    +  .    .+.+|-|+ ..
T Consensus        12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~~   90 (334)
T 1j71_A           12 PSYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLT-SS   90 (334)
T ss_dssp             SSEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSC-EE
T ss_pred             cEEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCC-EE
Confidence            4578999998  8999999999999998843   3431        34322112211    1  1    12344443 35


Q ss_pred             EeEEEEEEEEECCeEEE-eEEEEec-CCCcccccchhh
Q psy8018         205 IGRIHMVQIAIENDFLT-TSFSVLE-DQPMDMLLGLDM  240 (280)
Q Consensus       205 ~g~i~~~~i~IG~~~~~-~~~~Vl~-~~~~d~ILG~D~  240 (280)
                      .|.+....+.+|+..++ ..|.+.. ....|+||||-+
T Consensus        91 ~G~~~~D~v~~g~~~~~~~~fg~~~~~~~~~GilGLg~  128 (334)
T 1j71_A           91 QGSFYKDTVGFGGISIKNQQFADVTTTSVDQGIMGIGF  128 (334)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEESSSSCEEECSC
T ss_pred             EEEEEEEEEEECCEEEccEEEEEEEecCCCccEEEEcC
Confidence            68888889999987654 4555554 236899999875

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}

Probab=90.88  E-value=0.48  Score=42.97  Aligned_cols=92  Identities=14%  Similarity=0.203  Sum_probs=59.5

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCH---HHH--------HHcCCccccccc----e--e----eeeecCceeeE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSA---ACA--------ARVNITRLIDTR----W--A----GIAKGVGVQRI  204 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~---~~A--------~rlgL~~~~d~r----~--~----g~a~gvG~~~~  204 (280)
                      ...++++.|+  ++++++++|||+..+-+..   .|.        ..|.-....+..    +  .    .+.+|-| ...
T Consensus        12 ~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~   90 (342)
T 2qzx_A           12 ITYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDG-SYA   90 (342)
T ss_dssp             SCEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTS-CEE
T ss_pred             eEEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCC-CeE
Confidence            4678999998  8999999999999998843   242        134321112211    1  1    1234444 335


Q ss_pred             EeEEEEEEEEECCeEEE-eEEEEec-CCCcccccchhh
Q psy8018         205 IGRIHMVQIAIENDFLT-TSFSVLE-DQPMDMLLGLDM  240 (280)
Q Consensus       205 ~g~i~~~~i~IG~~~~~-~~~~Vl~-~~~~d~ILG~D~  240 (280)
                      .|.+....+.+|+..++ ..|.+.. ....|+||||-+
T Consensus        91 ~G~~~~D~v~~g~~~v~~~~fg~~~~~~~~~GilGLg~  128 (342)
T 2qzx_A           91 KGKLYKDTVGIGGVSVRDQLFANVWSTSARKGILGIGF  128 (342)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEEEEEECSSSCEEECSC
T ss_pred             EEEEEEEEEEECCEEecceEEEEEEecCCCcCEEEEcc
Confidence            68888889999987654 4565554 236899999875

>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...

Probab=90.44  E-value=1.1  Score=40.21  Aligned_cols=100  Identities=10%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             EEEcCEE------EEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE--
Q psy8018         154 CRVNGHP------VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT--  221 (280)
Q Consensus       154 ~~InG~~------v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~--  221 (280)
                      +.|+|..      ..++||||.+.+.++.+.++++    +....    ..|........   .......+.+|+..++  
T Consensus       208 i~v~~~~~~~~~~~~~iiDsGtt~~~lP~~~~~~i~~~~~~~~~----~~g~~~~C~~~---~~~p~i~f~f~g~~~~l~  280 (341)
T 3k1w_A          208 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKKR----LFDYVVKCNEG---PTLPDISFHLGGKEYTLT  280 (341)
T ss_dssp             EEETTEEEECTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEEC----SSCEEEEGGGG---GGCCCEEEEETTEEEEEC
T ss_pred             EEECCEEeecCCCCEEEEECCCChhcCCHHHHHHHHHHcCCeec----CCCeEEeCCCC---CcCCcEEEEECCEEEEEC
Confidence            4577774      4799999999999999877765    22110    00100000000   0011224455554332  


Q ss_pred             ---------------eEEEEec-----CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ---------------TSFSVLE-----DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ---------------~~~~Vl~-----~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                     |-+.+..     ......|||..||+.+-.+.|+.++++-|...
T Consensus       281 ~~~~~~~~~~~~~~~C~~~i~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a  339 (341)
T 3k1w_A          281 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA  339 (341)
T ss_dssp             HHHHBCCSCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             HHHheeEccCCCCCeEEeEEEecccCCCCCCeEEEChHHhcceEEEEeCCCCEEEEEEC
Confidence                           2222222     11345899999999999999999999998765

>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*

Probab=90.33  E-value=1.2  Score=33.39  Aligned_cols=32  Identities=16%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHH
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACA  179 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A  179 (280)
                      ...++++.|+  ++++.+++|||+..+-+ +..|.
T Consensus        13 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~   47 (97)
T 1lya_A           13 AQYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCK   47 (97)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCC
T ss_pred             CeEEEEEEECCCCeEEEEEEeCCCCceEEeEcCcc
Confidence            4688999998  89999999999998866 44454

>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=90.05  E-value=0.55  Score=34.73  Aligned_cols=44  Identities=5%  Similarity=0.146  Sum_probs=37.7

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG   47 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G   47 (280)
                      +|+|...  -++.+.|+++.+..+|.++|.++.++|++.-+|.|.-
T Consensus         7 ~VKV~~~--~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~   50 (83)
T 1oey_A            7 TLKVHYK--YTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP   50 (83)
T ss_dssp             EEEEESS--SEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred             EEEEEEE--EEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence            3444443  6889999999999999999999999999999999954

>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}

Probab=89.96  E-value=2.4  Score=33.73  Aligned_cols=65  Identities=17%  Similarity=0.281  Sum_probs=48.6

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHH--hCCC------CcceEEEE----CCee-eCCCc------------CCccccCCC
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQ--SGIS------AQEIAIEF----QGNA-LVDNK------------KTLKDYNIQ   63 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e--~gip------~~~Q~Li~----~Gk~-L~d~~------------~tL~~~gI~   63 (280)
                      ++..+++.|-..+||.++|++|-..  .|.|      +++..|-+    .|+. |.|.+            .||+.|+|.
T Consensus        15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~   94 (127)
T 3h6n_A           15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP   94 (127)
T ss_dssp             CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred             CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence            4567889999999999999998765  3554      35677766    2333 55411            369999999


Q ss_pred             CCCEEEEEEe
Q psy8018          64 DGDLVLLKRV   73 (280)
Q Consensus        64 ~gd~l~l~~~   73 (280)
                      ||.+|.|..+
T Consensus        95 dgatv~l~~~  104 (127)
T 3h6n_A           95 EGASLAMSLI  104 (127)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCEEEEEEc
Confidence            9999999875

>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*

Probab=89.85  E-value=1.4  Score=39.65  Aligned_cols=102  Identities=8%  Similarity=0.069  Sum_probs=58.0

Q ss_pred             EEEEcCEEE-----EEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEE---
Q psy8018         153 NCRVNGHPV-----KAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFL---  220 (280)
Q Consensus       153 ~~~InG~~v-----~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~---  220 (280)
                      .+.|+|..+     .++||||.+.+.++.+.++++    +-....+..+.   ..-...   .......+.+|+..+   
T Consensus       200 ~i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~~~~~~~~~g~~~---~~C~~~---~~~P~i~f~f~g~~~~i~  273 (329)
T 1dpj_A          200 GIGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAEIGAKKGWTGQYT---LDCNTR---DNLPDLIFNFNGYNFTIG  273 (329)
T ss_dssp             EEEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHHHTCEECTTSSEE---ECGGGG---GGCCCEEEEETTEEEEEC
T ss_pred             eEEECCeEecCCCccEEeeCCCCcEECCHHHHHHHHHHhCCccCCCCeEE---EECCCC---CcCCcEEEEECCEEEEEC
Confidence            356777654     599999999999999887765    21100000000   000000   001112233333221   


Q ss_pred             ----------EeEEEEec-----CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         221 ----------TTSFSVLE-----DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       221 ----------~~~~~Vl~-----~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                .|-+.+..     ......|||..||+.+-.+.|+.+++|-|...
T Consensus       274 ~~~y~~~~~~~C~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~  328 (329)
T 1dpj_A          274 PYDYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA  328 (329)
T ss_dssp             TTTSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             HHHhEecCCCEEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEEEEEC
Confidence                      13322222     12345899999999999999999999988754

>3lpj_A Beta-secretase 1; alzheimer'S, aspartyl protease, hydrolase; HET: TLA Z75; 1.79A {Homo sapiens} PDB: 3lpi_A* 3lpk_A* 3ohf_A* 3ohh_A* 3r2f_A* 3skf_A* 3skg_A* 4fse_A* 2hiz_A* 2p83_A* 2va7_A* 2va5_A* 2va6_A*

Probab=89.84  E-value=0.81  Score=43.31  Aligned_cols=88  Identities=14%  Similarity=0.237  Sum_probs=56.1

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCccccccc----e--e----eeeecCceeeEEeEEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i~  214 (280)
                      ..+++++.|+  ++++++++|||+..+-+. ..|   |......+..    +  .    .+.+|-|.  ..|.+....+.
T Consensus        74 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWV~~~~c---c~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~  148 (455)
T 3lpj_A           74 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVS  148 (455)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEcCCCcceEEecccc---cccCCcccCCCCCCcccCCccEEEEeCCeE--EEEEEEEEEEE
Confidence            3689999998  899999999999988874 334   3322221111    1  1    13456565  37888888999


Q ss_pred             ECC---eEEEeEEEEec--------CCCcccccchhh
Q psy8018         215 IEN---DFLTTSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       215 IG~---~~~~~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      +|+   ..+...|.+..        ....|+||||-+
T Consensus       149 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~  185 (455)
T 3lpj_A          149 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY  185 (455)
T ss_dssp             CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred             ECCCcceeeEEEEEEEEccCcccccCCCcceEEEeCc
Confidence            984   22332333221        235799999975

>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2

Probab=89.75  E-value=1.5  Score=39.49  Aligned_cols=103  Identities=14%  Similarity=0.220  Sum_probs=60.8

Q ss_pred             EEEEcCEE----EEEEEcCCCcceecCHHHHHHcCCcccccccee--eeeec-CceeeEEeEEEEEEEEE-CCeEEE---
Q psy8018         153 NCRVNGHP----VKAFIDSGAQTTIMSAACAARVNITRLIDTRWA--GIAKG-VGVQRIIGRIHMVQIAI-ENDFLT---  221 (280)
Q Consensus       153 ~~~InG~~----v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~--g~a~g-vG~~~~~g~i~~~~i~I-G~~~~~---  221 (280)
                      .+.|||+.    ..++||||.+.+.++.+.++++--.  +...+.  +.... +--    .......+.+ |+..+.   
T Consensus       201 ~i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l~~~--~~~~~~~~~~~~~~~~C----~~~p~i~f~f~~g~~~~i~~  274 (334)
T 1j71_A          201 SINFDGTSVSTNADVVLDSGTTITYFSQSTADKFARI--VGATWDSRNEIYRLPSC----DLSGDAVFNFDQGVKITVPL  274 (334)
T ss_dssp             EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHH--HTCEEETTTTEEECSSS----CCCSEEEEEESTTCEEEEEG
T ss_pred             EEEECCEeccCCccEEEeCCCCcEecCHHHHHHHHHH--cCCcccCCCceEEEEcC----CCCCceEEEEcCCcEEEECH
Confidence            35678865    4589999999999999888765110  111100  00000 000    0011223444 333221   


Q ss_pred             ------------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         222 ------------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       222 ------------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                                  |-+.+...  -..|||-.||+.+-.+.|+.++++-|...+..
T Consensus       275 ~~y~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~  326 (334)
T 1j71_A          275 SELILKDSDSSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQVKYT  326 (334)
T ss_dssp             GGGEEECSSSSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred             HHheeecCCCCeeEEEEeEC--CCcEEChHhhccEEEEEECCCCEEEEEecCCC
Confidence                        33322222  24899999999999999999999999887664

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}

Probab=89.63  E-value=0.82  Score=42.52  Aligned_cols=92  Identities=15%  Similarity=0.119  Sum_probs=57.1

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-H-----------HHH----HHcCCc--------c-----ccccceeeee
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-A-----------ACA----ARVNIT--------R-----LIDTRWAGIA  196 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~-----------~~A----~rlgL~--------~-----~~d~r~~g~a  196 (280)
                      ...++++.|+  .+++.++||||+..+-+. .           .|.    ..++--        .     .....+ .+.
T Consensus        21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~~~~Sst~~~~~C~s~~C~~~~~~~c~~c~~~~~s~~~~~~~~~-~~~   99 (403)
T 3aup_A           21 GLHWANLQKRTPLMQVPVLVDLNGNHLWVNCEQQYSSKTYQAPFCHSTQCSRANTHQCLSCPAASRPGCHKNTCGL-MST   99 (403)
T ss_dssp             CCEEEEEEETTTTEEEEEEEETTCSSEEEECSSCCCCSSCBCCCTTBHHHHHTTCCCEEECSSSCBTTBCSSEEEE-EEE
T ss_pred             ceEEEEEECCCCCceeEEEEECCCCceeECCCCCCCCCCCCccCCCCccccCccccCccccCCCCCCCCCCCccee-Eee
Confidence            4678999998  889999999999988763 2           221    111100        0     001112 133


Q ss_pred             ecCceeeEEeEEEEEEEEECC-----------eEEE-eEEEEecC--------CCcccccchhh
Q psy8018         197 KGVGVQRIIGRIHMVQIAIEN-----------DFLT-TSFSVLED--------QPMDMLLGLDM  240 (280)
Q Consensus       197 ~gvG~~~~~g~i~~~~i~IG~-----------~~~~-~~~~Vl~~--------~~~d~ILG~D~  240 (280)
                      +|..+....|.+....+.+|+           ..++ ..|.+...        ...|+||||-+
T Consensus       100 Y~~d~~~~~G~~~~Dtv~ig~~~g~~~~~~~~~~v~~~~Fg~~~~~~~~~~~~~~~dGIlGLg~  163 (403)
T 3aup_A          100 NPITQQTGLGELGEDVLAIHATQGSTQQLGPLVTVPQFLFSCAPSFLVQKGLPRNTQGVAGLGH  163 (403)
T ss_dssp             ETTTTEEEEEEEEEEEEEEEECCC----CCCEEEEEEEEEEEECGGGGSSSSSTTCCEEEECSS
T ss_pred             cCCCCceeeEEEEEEEEEecccCCccccccccccccCEEEECCcccccccCCCCCCceEEECCC
Confidence            443345667888888899986           4443 45655542        25799999865

>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*

Probab=89.51  E-value=1.5  Score=39.33  Aligned_cols=106  Identities=15%  Similarity=0.209  Sum_probs=62.2

Q ss_pred             EEEcCEEE----EEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE---EeEEEEEEEEEC-CeEEE----
Q psy8018         154 CRVNGHPV----KAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI---IGRIHMVQIAIE-NDFLT----  221 (280)
Q Consensus       154 ~~InG~~v----~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~---~g~i~~~~i~IG-~~~~~----  221 (280)
                      +.|||..+    .++||||.+.+.++.+.++++--.  +...+.......|.-..   ........+.++ +..+.    
T Consensus       204 i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~--~~~~~~~~~~~~~~~~~~C~~~~~p~i~f~f~~g~~~~v~~~  281 (339)
T 3fv3_A          204 VNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQLADK--AGARLVQVARDQYLYFIDCNTDTSGTTVFNFGNGAKITVPNT  281 (339)
T ss_dssp             EEESSCEEEEEEEEEECTTBSSEEECHHHHHHHHHH--HTCEEEEEETTEEEEEECTTCCCCSEEEEEETTSCEEEEEGG
T ss_pred             EEECCEeecCCccEEEeCCCCCEecCHHHHHHHHHH--cCCEEccccccCceEEEecCCCCCCcEEEEECCCCEEEECHH
Confidence            56788754    499999999999999988776211  11111000000000000   000122345553 33222    


Q ss_pred             ----------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         222 ----------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       222 ----------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                                |-+.+.+  .-..|||..||+.+-.+.|+.++++-|...+..
T Consensus       282 ~~~~~~~~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~  331 (339)
T 3fv3_A          282 EYVYQNGDGTCLWGIQP--SDDTILGDNFLRHAYLLYNLDANTISIAQVKYT  331 (339)
T ss_dssp             GGEEECSSSCEEESEEE--CSSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred             HheeeCCCCeEEEEEEe--CCcEEeChHHHhCEEEEEECCCCEEEEEecCCC
Confidence                      3233332  123899999999999999999999999887664

>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2

Probab=89.47  E-value=0.61  Score=41.87  Aligned_cols=100  Identities=12%  Similarity=0.111  Sum_probs=60.0

Q ss_pred             EEEEcCEE-----EEEEEcCCCcceecCHHHHHHc----CCccccccceeee-eecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018         153 NCRVNGHP-----VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGI-AKGVGVQRIIGRIHMVQIAIENDFLT-  221 (280)
Q Consensus       153 ~~~InG~~-----v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~-a~gvG~~~~~g~i~~~~i~IG~~~~~-  221 (280)
                      .+.|||..     ..++||||.+.+.++.+.++++    +-. .    ..|. ...-...   .......+.+|+..+. 
T Consensus       196 ~i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~~~~~~-~----~~g~~~~~C~~~---~~~P~i~f~f~g~~~~i  267 (324)
T 1am5_A          196 GITVNGQTAACEGCQAIVDTGTSKIVAPVSALANIMKDIGAS-E----NQGEMMGNCASV---QSLPDITFTINGVKQPL  267 (324)
T ss_dssp             EEEETTEECCCCCEEEEECTTCSSEEECTTTHHHHHHHHTCE-E----CCCCEECCTTSS---SSSCCEEEEETTEEEEE
T ss_pred             EEEECCceeeccCceEEEecCCccEECCHHHHHHHHHHhCCc-c----cCCcEEEeCCCc---ccCCcEEEEECCEEEEE
Confidence            45678876     5799999999999998877665    221 0    0010 0000000   0111224455554332 


Q ss_pred             ------------eEEEEecC-----CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ------------TSFSVLED-----QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ------------~~~~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                  |-+.+...     .....|||..||+.+-.+.|+.+++|-|...
T Consensus       268 ~~~~y~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~a  323 (324)
T 1am5_A          268 PPSAYIEGDQAFCTSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPA  323 (324)
T ss_dssp             CHHHHEEESSSCEEECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEB
T ss_pred             CHHHhcccCCCeEEEEEEECccCCCCCCcEEEChHHhccEEEEEECCCCEEEEEEC
Confidence                        43333321     1235899999999999999999999988754

>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}

Probab=89.44  E-value=1.2  Score=40.63  Aligned_cols=32  Identities=13%  Similarity=-0.015  Sum_probs=27.6

Q ss_pred             cccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         232 MDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                      ...|||..||+.+-.+.|+.+++|-|...+.+
T Consensus       313 ~~~iLG~~fl~~~y~vfD~~~~rigfA~~~~~  344 (351)
T 1tzs_A          313 PLWILGDVFIRQFYSVFDRGNNRVGLAPAVPW  344 (351)
T ss_dssp             SCEEECHHHHHHEEEEEETTTTEEEEEEBC--
T ss_pred             CeEEEChHHhhheEEEEECCCCEEEEEECCcc
Confidence            35899999999999999999999999887654

>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*

Probab=89.21  E-value=1.2  Score=41.05  Aligned_cols=100  Identities=9%  Similarity=0.163  Sum_probs=58.7

Q ss_pred             EEEcCE---EEEEEEcCCCcceecCHHHHHHc----CCccccccceeee-eecCceeeEEeEEEEEEEEECCeEE-----
Q psy8018         154 CRVNGH---PVKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGI-AKGVGVQRIIGRIHMVQIAIENDFL-----  220 (280)
Q Consensus       154 ~~InG~---~v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~-a~gvG~~~~~g~i~~~~i~IG~~~~-----  220 (280)
                      +.|||.   ...|+||||.+.+.++.+.++++    +-.  .+. ..|. ......    .......+.+|+..+     
T Consensus       247 i~v~g~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~~~~~--~~~-~~g~~~~~C~~----~~~P~i~f~f~g~~~~l~~~  319 (375)
T 1miq_A          247 VHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVI--KVP-FLPFYVTTCDN----KEMPTLEFKSANNTYTLEPE  319 (375)
T ss_dssp             EEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCE--ECT-TSSCEEEETTC----TTCCCEEEECSSCEEEECGG
T ss_pred             EEECCEEcccceEEecCCCccEEcCHHHHHHHHHHhCCc--ccC-CCCeEEEECCC----CCCCcEEEEECCEEEEECHH
Confidence            678886   56899999999999999887765    221  000 0000 000000    001111233333221     


Q ss_pred             ------------EeEEEEecCC--CcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         221 ------------TTSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       221 ------------~~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                  .|-+.+.+..  ....|||-.||+.+-.+.|+.+++|-|...
T Consensus       320 ~yi~~~~~~g~~~C~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~riGfA~~  373 (375)
T 1miq_A          320 YYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIA  373 (375)
T ss_dssp             GSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEE
T ss_pred             HhEeeccCCCCCeEEEEEEECCCCCCcEEECHHHhccEEEEEECCCCEEEEEEc
Confidence                        2333333322  145899999999999999999999988765

>1htr_B Gastricsin; aspartyl protease; 1.62A {Homo sapiens} SCOP: b.50.1.2 PDB: 1avf_A

Probab=88.95  E-value=0.69  Score=41.62  Aligned_cols=103  Identities=11%  Similarity=0.089  Sum_probs=59.3

Q ss_pred             EEEEcCEE-------EEEEEcCCCcceecCHHHHHHcCCccccccce--eee-eecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018         153 NCRVNGHP-------VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGI-AKGVGVQRIIGRIHMVQIAIENDFLT-  221 (280)
Q Consensus       153 ~~~InG~~-------v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~-a~gvG~~~~~g~i~~~~i~IG~~~~~-  221 (280)
                      .+.|||..       ..++||||.+.+.++.+.++++--  .+....  .|. ...-...   .......+.+|+..+. 
T Consensus       197 ~i~v~~~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~l~~--~~~~~~~~~g~~~~~C~~~---~~~P~i~f~f~g~~~~i  271 (329)
T 1htr_B          197 EFLIGGQASGWCSEGCQAIVDTGTSLLTVPQQYMSALLQ--ATGAQEDEYGQFLVNCNSI---QNLPSLTFIINGVEFPL  271 (329)
T ss_dssp             EEEETTEECCTTTTCEEEEECTTCCSEEEEGGGHHHHHH--HHTCEECTTSCEEECGGGG---GGSCCEEEEETTEEEEE
T ss_pred             EEEECCceeeecCCCceEEEecCCccEECCHHHHHHHHH--HhCCeecCCCeEEEeCCCc---ccCCcEEEEECCEEEEE
Confidence            35678865       469999999999999887776511  011000  000 0000000   0011223444543322 


Q ss_pred             ------------eEEEEecC-----CCc-ccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ------------TSFSVLED-----QPM-DMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ------------~~~~Vl~~-----~~~-d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                  |-+.+...     .+. ..|||..||+.+-.+.|+.+++|-|...
T Consensus       272 ~~~~y~~~~~g~C~~~~~~~~~~~~~~~~~~iLG~~fl~~~yvvfD~~~~~igfa~~  328 (329)
T 1htr_B          272 PPSSYILSNNGYCTVGVEPTYLSSQNGQPLWILGDVFLRSYYSVYDLGNNRVGFATA  328 (329)
T ss_dssp             CHHHHEEECSSCEEESEEEECCCCTTSSCEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             CHHHhcccCCCEEEEEEEECCCCCCCCCceEEEChHHhccEEEEEECCCCEEEEEeC
Confidence                        43223221     123 5899999999999999999999988754

>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*

Probab=88.88  E-value=1.8  Score=39.38  Aligned_cols=32  Identities=6%  Similarity=-0.047  Sum_probs=28.7

Q ss_pred             cccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         232 MDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                      ...|||..||+.+-.+.|+.+++|-|...+.+
T Consensus       326 ~~~iLG~~fl~~~yvvfD~~~~~igfa~~~~~  357 (361)
T 1mpp_A          326 NQFIVGNLFLRFFVNVYDFGKNRIGFAPLASG  357 (361)
T ss_dssp             SCCEEEHHHHTTEEEEEETTTTEEEEEEBCTT
T ss_pred             CCEEEChHHhccEEEEEECCCCEEEEEEcccC
Confidence            45899999999999999999999999887654

>3vf3_A Beta-secretase 1; structure-based drug design, hydrolase-hydrolase inhibitor C; HET: 0GS; 1.48A {Homo sapiens} PDB: 2f3e_A* 2f3f_A* 1ym2_A* 3dv1_A* 3dv5_A* 3k5c_A* 3k5f_A* 3k5g_A* 3pi5_A* 3qbh_A* 3duy_A* 3veu_A* 3vg1_A* 4d83_A* 4d88_A* 4d89_A* 4d8c_A* 3msk_A* 3k5d_A* 1ym4_A* ...

Probab=88.21  E-value=1.1  Score=41.49  Aligned_cols=88  Identities=14%  Similarity=0.242  Sum_probs=55.5

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCccccccc----e--e----eeeecCceeeEEeEEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i~  214 (280)
                      ...++++.|+  ++++++++|||++.+-+. ..|   |......+..    +  .    .+.+|-|.  ..|.+....+.
T Consensus        28 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c---~~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~  102 (402)
T 3vf3_A           28 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQGK--WEGELGTDLVS  102 (402)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEeCCCCceEEccCCC---CcccCCcCcccCcccccCCCEEEEEECcEE--EEEEEEEEEEE
Confidence            4689999998  899999999999988873 344   2222211111    1  1    13456555  47888888999


Q ss_pred             ECC-eE--EEeEEEEec--------CCCcccccchhh
Q psy8018         215 IEN-DF--LTTSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       215 IG~-~~--~~~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      +|+ ..  ....+.+..        ....|+||||-+
T Consensus       103 ig~~~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~  139 (402)
T 3vf3_A          103 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY  139 (402)
T ss_dssp             CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred             ECCccccceeeeEEEEEccccccccCCCccceEEcCc
Confidence            984 22  222222221        235799999985

>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A

Probab=88.13  E-value=0.45  Score=36.25  Aligned_cols=64  Identities=16%  Similarity=0.233  Sum_probs=43.9

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHhCCCC-------c----ceEEEECC-eeeC-----CCcCCccccCCCCCCEEEEEEec
Q psy8018          12 CFLLDVSEDLELENFKAFCEVQSGISA-------Q----EIAIEFQG-NALV-----DNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus        12 ~~~leV~~~~tV~~LK~~Ie~e~gip~-------~----~Q~Li~~G-k~L~-----d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      ..+++|+++.|+++|-..+.+...+-.       .    ...|+..+ ..|+     +-+++|.+.|+.+|+.|++.-..
T Consensus         6 ~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD~~   85 (98)
T 1y8x_B            6 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVT   85 (98)
T ss_dssp             CCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTT
T ss_pred             cEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEECCC
Confidence            557899999999999999988433211       1    34455444 1232     22477999999999999987543


Q ss_pred             c
Q psy8018          75 V   75 (280)
Q Consensus        75 ~   75 (280)
                      .
T Consensus        86 ~   86 (98)
T 1y8x_B           86 T   86 (98)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A

Probab=88.10  E-value=3.7  Score=36.76  Aligned_cols=103  Identities=10%  Similarity=0.021  Sum_probs=58.7

Q ss_pred             EEEcC---EEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceee--EEeEEEEEEEEECCeEEE-------
Q psy8018         154 CRVNG---HPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQR--IIGRIHMVQIAIENDFLT-------  221 (280)
Q Consensus       154 ~~InG---~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~--~~g~i~~~~i~IG~~~~~-------  221 (280)
                      +.|+|   ....++||||.+.+.++.+.++++--... ...+.   ...|.-.  ..-......+.+|+..++       
T Consensus       198 i~v~~~~~~~~~aiiDSGTs~~~lP~~~~~~l~~~i~-~a~~~---~~~g~~~~~C~~~~P~i~f~fgg~~~~l~~~~~~  273 (323)
T 1bxo_A          198 YTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQVS-GAQQD---SNAGGYVFDCSTNLPDFSVSISGYTATVPGSLIN  273 (323)
T ss_dssp             EEETTEEEEEEEEEECTTCSSEEECHHHHHHHHTTST-TCEEE---TTTTEEEECTTCCCCCEEEEETTEEEEECHHHHE
T ss_pred             EEECCccCCCceEEEeCCCCceeCCHHHHHHHHHhCC-CceEc---CcCCEEEEECCCCCceEEEEECCEEEEECHHHeE
Confidence            34555   35679999999999999998887621100 00000   0001000  000112234555554332       


Q ss_pred             ---------eEEEEecC-CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ---------TSFSVLED-QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ---------~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                               |-+.+... ..-..|||-.||+.+-.+.|+.+++|-|...
T Consensus       274 ~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~~  322 (323)
T 1bxo_A          274 YGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAPQ  322 (323)
T ss_dssp             EEECSSSSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             EeccCCCCeEEEEEECCCCCCcEEEChHHHcCEEEEEECCCCEEEEecC
Confidence                     22212221 1234899999999999999999999988654

>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*

Probab=87.91  E-value=1.8  Score=33.98  Aligned_cols=65  Identities=22%  Similarity=0.323  Sum_probs=47.2

Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHH--hCCCC------cceEEEE-CC---e-eeCCCc------------CCccccCCCC
Q psy8018          10 NECFLLDVSEDLELENFKAFCEVQ--SGISA------QEIAIEF-QG---N-ALVDNK------------KTLKDYNIQD   64 (280)
Q Consensus        10 g~~~~leV~~~~tV~~LK~~Ie~e--~gip~------~~Q~Li~-~G---k-~L~d~~------------~tL~~~gI~~   64 (280)
                      ...+++.|-..+||.++|++|-..  .|.|.      ++..|-+ .|   + .|.|.+            .||+.|+|.|
T Consensus        26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d  105 (117)
T 4e74_A           26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD  105 (117)
T ss_dssp             CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred             CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence            445788888999999999998765  35553      4566765 33   3 354411            3699999999


Q ss_pred             CCEEEEEEec
Q psy8018          65 GDLVLLKRVQ   74 (280)
Q Consensus        65 gd~l~l~~~~   74 (280)
                      |.++-|+.++
T Consensus       106 gatl~l~~~~  115 (117)
T 4e74_A          106 GSVVALVSKQ  115 (117)
T ss_dssp             TCEEEEEECC
T ss_pred             CCEEEEEeCC
Confidence            9999998863

>1ibq_A Aspergillopepsin; aspartic proteinase, hydrolase; HET: MAN; 2.14A {Aspergillus phoenicis} SCOP: b.50.1.2

Probab=87.41  E-value=1.7  Score=39.01  Aligned_cols=105  Identities=12%  Similarity=0.017  Sum_probs=58.3

Q ss_pred             EEEcCE-----EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-------
Q psy8018         154 CRVNGH-----PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-------  221 (280)
Q Consensus       154 ~~InG~-----~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-------  221 (280)
                      +.|+|.     ...++||||.+.+.++.+.++++--... ...+. ...|.-.....-......+.+|+..+.       
T Consensus       197 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~i~~~i~-~a~~~-~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~  274 (325)
T 1ibq_A          197 YSIGDGSSSSSGFSAIADTGTTLILLDDEIVSAYYEQVS-GAQES-YEAGGYVFSCSTDLPDFTVVIGDYKAVVPGKYIN  274 (325)
T ss_dssp             EEETTSCCBSCCEEEEECTTCCSEEECHHHHHHHHTTST-TCBCC-SSSSSCEEETTCCCCCEEEEETTEEEEECHHHHE
T ss_pred             EEECCeeccCCCceEEEeCCCCcEeCCHHHHHHHHHhCC-CceEc-CcCCeEEEEcCCCCCcEEEEECCEEEEECHHHhc
Confidence            456664     4679999999999999998887621100 00000 000000000000111224444543322       


Q ss_pred             ----------eEEEEecCC-CcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ----------TSFSVLEDQ-PMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ----------~~~~Vl~~~-~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                |-+.+.... .-..|||-.||+.+-.+.|+.+++|-|...
T Consensus       275 ~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~  324 (325)
T 1ibq_A          275 YAPVSTGSSTCYGGIQSNSGLGLSILGDVFLKSQYVVFNSEGPKLGFAAQ  324 (325)
T ss_dssp             EEESSTTCSEEEESEEECTTTCSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             ccccCCCCCeEEEEEEcCCCCCceEEChHHhcCEEEEEECCCCEEEeeeC
Confidence                      222122211 234799999999999999999999988653

>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...

Probab=87.41  E-value=1.7  Score=41.50  Aligned_cols=104  Identities=11%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             EEEcCE---EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEE--eEEEEEEEEECCeEEE-------
Q psy8018         154 CRVNGH---PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRII--GRIHMVQIAIENDFLT-------  221 (280)
Q Consensus       154 ~~InG~---~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~--g~i~~~~i~IG~~~~~-------  221 (280)
                      +.|+|.   ...|+||||.+.+.++.+.++++-=.  +....  ...|..-.-..  .......+.+|+..++       
T Consensus       323 I~Vgg~~~~~~~aIiDSGTsl~~lP~~~~~~l~~~--i~~~~--~~~g~~~~v~C~~~~~P~itf~fgg~~~~l~~~~yi  398 (453)
T 2bju_A          323 AHVGNIMLEKANCIVDSGTSAITVPTDFLNKMLQN--LDVIK--VPFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYL  398 (453)
T ss_dssp             EEETTEEEEEEEEEECTTCCSEEECHHHHHHHTTT--SSCEE--CTTSSCEEEETTCTTCCCEEEECSSCEEEECHHHHE
T ss_pred             EEECcEEeccccEEEcCCCCeEecCHHHHHHHHHH--hCCcc--cCCCceEEEecCCCCCCcEEEEECCEEEEECHHHhE
Confidence            567773   36799999999999999998887311  11100  00010000000  0011223444443221       


Q ss_pred             ----------eEEEEecCC--CcccccchhhhhcceEEEEecccEEEeeeee
Q psy8018         222 ----------TSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDFLTTSFSV  261 (280)
Q Consensus       222 ----------~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~  261 (280)
                                |-+.+.+..  ....|||-.||+.+-.+.|+.+++|-+...+
T Consensus       399 ~~~~~~g~~~C~~~~~~~~~~~~~~ILGd~Flr~~yvVFD~~n~rIGfA~~~  450 (453)
T 2bju_A          399 QHIEDVGPGLCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAK  450 (453)
T ss_dssp             EECTTTSTTEEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEEC
T ss_pred             eecccCCCceEEEEEEeCCCCCCCEEECHHHhhcEEEEEECCCCEEEEEEcc
Confidence                      322232221  2358999999999999999999999987654

>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}

Probab=87.09  E-value=4.8  Score=36.15  Aligned_cols=106  Identities=13%  Similarity=0.189  Sum_probs=61.1

Q ss_pred             EEEEcCEEE----EEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE--EeEEEEEEEEE-CCeEEE----
Q psy8018         153 NCRVNGHPV----KAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI--IGRIHMVQIAI-ENDFLT----  221 (280)
Q Consensus       153 ~~~InG~~v----~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~--~g~i~~~~i~I-G~~~~~----  221 (280)
                      .+.|||+.+    .++||||.+.+.++.+.++++--.  +...+.. ....+..-.  ........+.+ |+..+.    
T Consensus       201 ~i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~--~~~~~~~-~~~~~~~~~~~C~~~p~i~f~f~~g~~~~i~~~  277 (342)
T 2qzx_A          201 SVNVRGRNVDANTNVLLDSGTTISYFTRSIVRNILYA--IGAQMKF-DSAGNKVYVADCKTSGTIDFQFGNNLKISVPVS  277 (342)
T ss_dssp             EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHHHHH--HTCEEEE-CTTSCEEEEECTTCCCEEEEEETTTEEEEEEGG
T ss_pred             EEEECCEecCCCcCEEEeCCCCCEEcCHHHHHHHHHH--hCCeeee-ccCCCcEEEEECCCCCcEEEEECCCcEEEEcHH
Confidence            356788754    589999999999999988776110  1111000 000010000  00011224455 343322    


Q ss_pred             ----------------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         222 ----------------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       222 ----------------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                                      |-+.+...  -..|||..||+.+-.+.|+.+++|-|...+..
T Consensus       278 ~~~~~~~~~~~~~~~~C~~~i~~~--~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~  333 (342)
T 2qzx_A          278 EFLFQTYYTSGKPFPKCEVRIRES--EDNILGDNFLRSAYVVYNLDDKKISMAPVKYT  333 (342)
T ss_dssp             GGEECCBCTTSCBCSSEEESEEEC--SSCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred             HhcccccccCCCCCCccEEEEecC--CCcEeChHhhhcEEEEEECCCCEEEEEeeCCC
Confidence                            22222111  24899999999999999999999999887654

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=86.82  E-value=1.7  Score=39.65  Aligned_cols=65  Identities=6%  Similarity=0.127  Sum_probs=47.9

Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECC-eeeCCCcCCccccCCCC-CCEEEEEE
Q psy8018           8 LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQG-NALVDNKKTLKDYNIQD-GDLVLLKR   72 (280)
Q Consensus         8 ~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~G-k~L~d~~~tL~~~gI~~-gd~l~l~~   72 (280)
                      ..-....+.+.+..|+.++++.++.++++++++|.|+|.+ ....+....-+.|.-.. ..-|+|..
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (396)
T 4eut_A          319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVS  385 (396)
T ss_dssp             TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEE
T ss_pred             ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEe
Confidence            3455678899999999999999999999999999999998 44445545555554332 23344443

>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}

Probab=86.65  E-value=3  Score=38.10  Aligned_cols=88  Identities=13%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCcccccc----ce------eeeeecCceeeEEeEEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLIDT----RW------AGIAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d~----r~------~g~a~gvG~~~~~g~i~~~~i~  214 (280)
                      ...++++.|+  ++++++++|||++.+-+. ..|.. |.  ...+.    .+      -.+.+|-|+  ..|.+....+.
T Consensus        13 ~~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~~c~~-~~--~~f~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~   87 (383)
T 2ewy_A           13 RGYYLEMLIGTPPQKLQILVDTGSSNFAVAGTPHSY-ID--TYFDTERSSTYRSKGFDVTVKYTQGS--WTGFVGEDLVT   87 (383)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCBTT-BS--CCCCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred             CcEEEEEEecCCCceEEEEEecCCCceEEecCCCCc-cc--cCcccccCccceeCCceEEEEECCcE--EEEEEEEEEEE
Confidence            3578999998  899999999999998774 34422 21  11111    11      113456564  36888888999


Q ss_pred             ECCe-EE--EeEEEEec--------CCCcccccchhh
Q psy8018         215 IEND-FL--TTSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       215 IG~~-~~--~~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      +|+. ..  ...|....        ....|+||||-+
T Consensus        88 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg~  124 (383)
T 2ewy_A           88 IPKGFNTSFLVNIATIFESENFFLPGIKWNGILGLAY  124 (383)
T ss_dssp             ETTTEEEEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred             ECCCccceeEEEEEEEEeecceeeccCcCceEEecCc
Confidence            9852 22  22333221        135799999875

>1izd_A Aspartic proteinase; sugar binding, acid protease, hydrolase; HET: MAN; 1.90A {Aspergillus oryzae} SCOP: b.50.1.2 PDB: 1ize_A*

Probab=86.57  E-value=1.3  Score=39.73  Aligned_cols=98  Identities=11%  Similarity=0.044  Sum_probs=56.4

Q ss_pred             EEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCcee--eEEeEEEEEEEEECCeEEE---------------
Q psy8018         159 HPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ--RIIGRIHMVQIAIENDFLT---------------  221 (280)
Q Consensus       159 ~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~--~~~g~i~~~~i~IG~~~~~---------------  221 (280)
                      ....+++|||.+.+.++.+.++++--.. ....+.   ...|.-  ...-......+.+|+..++               
T Consensus       207 ~~~~aiiDSGTs~~~lp~~~~~~i~~~i-~ga~~~---~~~g~~~~~C~~~~P~i~f~fgg~~~~i~~~~~~~~~~~~~~  282 (323)
T 1izd_A          207 DSITGIADTGTTLLLLDDSIVDAYYEQV-NGASYD---SSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQ  282 (323)
T ss_dssp             CCEEEEECTTCCSEEECHHHHHHHHTTS-TTCEEE---TTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTE
T ss_pred             CCceEEEeCCCcceeCCHHHHHHHHHhC-CCcEEc---CcCCEEEEECCCCCceEEEEECCEEEecCHHHeEEecCCCCe
Confidence            3467999999999999999888762110 000000   000100  0000112234555554332               


Q ss_pred             eEEEEecC-CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 TSFSVLED-QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      |-+.+... .....|||-.||+.+-.+.|+.+++|-|...
T Consensus       283 C~~~i~~~~~~~~~IlG~~fl~~~y~vfD~~~~riGfA~~  322 (323)
T 1izd_A          283 TFGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAAQ  322 (323)
T ss_dssp             EEESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEcCCCCCcEEEChHHhcCEEEEEECCCCEEEEeeC
Confidence            22222221 1234899999999999999999999988654

>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}

Probab=86.41  E-value=0.63  Score=37.79  Aligned_cols=36  Identities=78%  Similarity=1.168  Sum_probs=29.5

Q ss_pred             eEEEEecccEEEeeeeecCCCccceeeccchhhccC
Q psy8018         245 QVQIAIENDFLTTSFSVLEDQPMDMLLGLDMLKRHQ  280 (280)
Q Consensus       245 ~~~ID~~~~~L~i~~~~~~~~~~~~~~~~~~~~~~~  280 (280)
                      .+.|-+.+..+.....+++..++++|+|+|+|+||+
T Consensus        85 ~~~I~Ig~~~~~~~~~Vle~~~~d~LLGmD~L~~~~  120 (148)
T 3s8i_A           85 LAQIQIEGDFLQCSFSILEDQPMDMLLGLDMLRRHQ  120 (148)
T ss_dssp             EEEEEETTEEEEEEEEEETTCSSSEEECHHHHHHTT
T ss_pred             EEEEEECCEEEEEEEEEeCCCCcCeeccHHHHHhCC
Confidence            355666677777777888888999999999999996

>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2

Probab=86.16  E-value=1.3  Score=39.88  Aligned_cols=109  Identities=14%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             EEEEEcC-EEE----EEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE--EeEEEEEEEEECCeEEE---
Q psy8018         152 INCRVNG-HPV----KAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI--IGRIHMVQIAIENDFLT---  221 (280)
Q Consensus       152 i~~~InG-~~v----~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~--~g~i~~~~i~IG~~~~~---  221 (280)
                      ..+.|+| +.+    .++||||.+.+.++.+.++++ .. .....+.. ..|.-....  ........+.+|+..+.   
T Consensus       193 ~~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l-~~-~~~a~~~~-~~g~~~~~C~~~~~~p~i~f~f~g~~~~i~~  269 (340)
T 1wkr_A          193 QSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY-KK-ATGAVADN-NTGLLRLTTAQYANLQSLFFTIGGQTFELTA  269 (340)
T ss_dssp             EEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH-HH-HHTCEECT-TTSSEEECHHHHHTCCCEEEEETTEEEEECT
T ss_pred             eeEEECCCeEccCCCeEEEeCCcccccCCHHHHHHH-HH-hhCCEEcC-CCCeEEeeccccccCCcEEEEECCEEEEEcH
Confidence            4567888 654    799999999999999988876 11 11111100 000000000  00011123334443221   


Q ss_pred             -------------------eEEEEec--C---CCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         222 -------------------TSFSVLE--D---QPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       222 -------------------~~~~Vl~--~---~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                                         |-+.+.+  .   .+...|||-.||+.+-.+.|+.+++|-|...+..
T Consensus       270 ~~yi~~~~~~~~~g~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~~~~~  335 (340)
T 1wkr_A          270 NAQIWPRNLNTAIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT  335 (340)
T ss_dssp             GGGBCCGGGGGGGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred             HHhccccccccccCCCCceEEEEEecCCCCCCCCcceEeChHhhhheEEEEeCCCCeEEEEecCCC
Confidence                               2122221  1   1234799999999999999999999999876553

>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}

Probab=85.80  E-value=1.9  Score=40.04  Aligned_cols=100  Identities=10%  Similarity=0.133  Sum_probs=58.5

Q ss_pred             EEEcCEE------EEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE--
Q psy8018         154 CRVNGHP------VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT--  221 (280)
Q Consensus       154 ~~InG~~------v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~--  221 (280)
                      +.|||..      ..|+||||.+.+.++.+.++.+    |-.. .+..+   ...-...   .......+.+|+..++  
T Consensus       251 i~v~~~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~-~~g~~---~v~C~~~---~~~P~i~f~~~g~~~~l~  323 (383)
T 2x0b_A          251 VSVGSSTLLCEDGCLALVDTGASYISGSTSSIEKLMEALGAKK-RLFDY---VVKCNEG---PTLPDISFHLGGKEYTLT  323 (383)
T ss_dssp             EEESSCCCBSTTCEEEEECTTCSSEEECHHHHHHHHHHHTCEE-CSSCE---EEEGGGT---TTCCCEEEEETTEEEEEC
T ss_pred             EEeCCceEEcCCCcEEEEcCCCceEEcCHHHHHHHHHHhCCcc-cCCcE---EEecccc---ccCceEEEEECCEEEEEC
Confidence            5677754      5799999999999998877765    2211 00000   0000000   0011224455554332  


Q ss_pred             ---------------eEEEEecC-----CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ---------------TSFSVLED-----QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ---------------~~~~Vl~~-----~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                     |-+.+...     .....|||--||+.+-.+.|+.+++|-|...
T Consensus       324 ~~~yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~Fl~~~y~vfD~~~~rIGfA~a  382 (383)
T 2x0b_A          324 SADYVFQESYSSKKLCTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA  382 (383)
T ss_dssp             HHHHBCCCCCCTTSEEEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             HHHhEeeccCCCCCeEEEEEEecccCCCCCCcEEEChHHhcceEEEEECCCCEEeEEEc
Confidence                           32122211     1335899999999999999999999988654

>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}

Probab=85.50  E-value=3.2  Score=30.68  Aligned_cols=59  Identities=19%  Similarity=0.154  Sum_probs=51.2

Q ss_pred             EEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018          13 FLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus        13 ~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +.-..+=..++..||.++|...|++-+.-.+...+..|..+ ++|-+-+++-.-++-+..
T Consensus         5 i~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~-k~LvdQcVqgeGlVQinv   63 (89)
T 2juo_A            5 VSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPD-RSLFDQGVKTDGTVQLSV   63 (89)
T ss_dssp             EEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTT-SBTTTSSCCCCSEEEEEE
T ss_pred             hhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCC-ccHHHhhcccccEEEEEE
Confidence            44456667889999999999999999999999999998765 899999999888888876

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=85.44  E-value=0.97  Score=45.54  Aligned_cols=66  Identities=21%  Similarity=0.389  Sum_probs=47.9

Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccC---C------CCCCEEEEEEe
Q psy8018           8 LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYN---I------QDGDLVLLKRV   73 (280)
Q Consensus         8 ~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~g---I------~~gd~l~l~~~   73 (280)
                      ...+..++.+.++.|+.+|+..|+.++|||++.|.+++.+..-.++....+.|-   .      .|.++++|..+
T Consensus       319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (676)
T 3qa8_A          319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN  393 (676)
T ss_dssp             SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred             cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence            356667899999999999999999999999999999985544334445666652   2      24556666544

>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}

Probab=84.95  E-value=1  Score=35.90  Aligned_cols=34  Identities=15%  Similarity=0.158  Sum_probs=31.0

Q ss_pred             EEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE
Q psy8018          12 CFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF   45 (280)
Q Consensus        12 ~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~   45 (280)
                      ..++-|..++|+.+||..|+.++|+|+++|+|-.
T Consensus        57 ~~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~   90 (130)
T 2kvr_A           57 YTVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP   90 (130)
T ss_dssp             CEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred             cceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence            3468889999999999999999999999999975

>1oew_A Endothiapepsin; hydrolase, aspartic proteinase mechanism, atomic resolution, succinimide, anisotropic refinement; HET: SUI; 0.9A {Cryphonectria parasitica} SCOP: b.50.1.2 PDB: 1gkt_A* 1gvt_A* 1gvv_A* 1gvw_A* 1gvx_A* 1gvu_A* 1oex_A* 2jji_A* 2jjj_A* 2vs2_A* 3uri_A* 3urj_A* 3url_A* 3pww_A* 1e80_E* 1e81_E* 1e82_E* 1e5o_E* 1eed_P* 1epl_E* ...

Probab=84.81  E-value=6.2  Score=35.34  Aligned_cols=102  Identities=11%  Similarity=0.016  Sum_probs=57.9

Q ss_pred             EEEcCE-----EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCcee--eEEeEEEEEEEEECCeEEE-----
Q psy8018         154 CRVNGH-----PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ--RIIGRIHMVQIAIENDFLT-----  221 (280)
Q Consensus       154 ~~InG~-----~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~--~~~g~i~~~~i~IG~~~~~-----  221 (280)
                      +.|+|.     ...++||||.+.+.++.+.++++--.. ....+.   ...|.-  ...-......+.+|+..+.     
T Consensus       201 i~v~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l~~~i-~~a~~~---~~~g~~~~~C~~~~P~i~f~fgg~~~~ip~~~  276 (329)
T 1oew_A          201 YAVGSGTFKSTSIDGIADTGTTLLYLPATVVSAYWAQV-SGAKSS---SSVGGYVFPCSATLPSFTFGVGSARIVIPGDY  276 (329)
T ss_dssp             EEETTSCCEEEEEEEEECTTCCSEEECHHHHHHHHTTS-TTCEEE---TTTTEEEEETTCCCCCEEEEETTEEEEECHHH
T ss_pred             EEECCeeccCCCceEEEeCCCCCEECCHHHHHHHHHhC-CCcEEc---CCCCEEEEECCCCCCcEEEEECCEEEEECHHH
Confidence            457774     457999999999999999888762110 000110   000100  0000111224445553322     


Q ss_pred             ------------eEEEEecC-CCcccccchhhhhcceEEEEe-cccEEEeee
Q psy8018         222 ------------TSFSVLED-QPMDMLLGLDMLKRHQVQIAI-ENDFLTTSF  259 (280)
Q Consensus       222 ------------~~~~Vl~~-~~~d~ILG~D~L~~~~~~ID~-~~~~L~i~~  259 (280)
                                  |-+.+... .....|||..||+.+-.+.|+ .+++|-|..
T Consensus       277 ~~~~~~~~~~~~C~~~i~~~~~~~~~iLG~~fl~~~y~vfD~~~~~riGfA~  328 (329)
T 1oew_A          277 IDFGPISTGSSSCFGGIQSSAGIGINIFGDVALKAAFVVFNGATTPTLGFAS  328 (329)
T ss_dssp             HEEEESSTTCSEEEESEEESTTTSSEEECHHHHTTEEEEEECSSSCEEEEEE
T ss_pred             eeeeecCCCCCeEEEEEEeCCCCCceEEChHHhcCEEEEEECCCCceEEEec
Confidence                        22222211 123489999999999999999 999988753

>2apr_A Rhizopuspepsin; hydrolase (aspartic proteinase); 1.80A {Rhizopus microsporus var} SCOP: b.50.1.2 PDB: 3apr_E* 4apr_E* 5apr_E* 6apr_E* 1uh9_A 1uh8_A 1uh7_A

Probab=84.56  E-value=1.6  Score=39.23  Aligned_cols=29  Identities=14%  Similarity=-0.012  Sum_probs=26.0

Q ss_pred             cccccchhhhhcceEEEEecccEEEeeee
Q psy8018         232 MDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      -..|||..||+.+-.+.|+.+++|-|...
T Consensus       295 ~~~iLG~~fl~~~y~vfD~~~~~igfA~~  323 (325)
T 2apr_A          295 GFAIIGDTFLKNNYVVFNQGVPEVQIAPV  323 (325)
T ss_dssp             SSEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             CCEEECHHHhcceEEEEECCCCEEEEEec
Confidence            34899999999999999999999988764

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=84.35  E-value=3.9  Score=29.88  Aligned_cols=69  Identities=19%  Similarity=0.086  Sum_probs=42.9

Q ss_pred             CEEEEEc------CCCcEEEEEeCCCccHHHHHHHHHHHhC-C-----C-------CcceEEEECCeeeCCCcCCccccC
Q psy8018           1 MKVTVTS------LDNECFLLDVSEDLELENFKAFCEVQSG-I-----S-------AQEIAIEFQGNALVDNKKTLKDYN   61 (280)
Q Consensus         1 M~ItV~~------~~g~~~~leV~~~~tV~~LK~~Ie~e~g-i-----p-------~~~Q~Li~~Gk~L~d~~~tL~~~g   61 (280)
                      |+|+|+.      ..|....+++ +..||.+|.+.+..... +     .       ...-.+.-||+..... .- .++-
T Consensus         1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~-~~-~~~~   77 (93)
T 3dwg_C            1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFS-GG-LATA   77 (93)
T ss_dssp             -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGT-TG-GGCB
T ss_pred             CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCc-CC-CCcC
Confidence            8899982      2233335775 45799999999987642 0     0       0124556688876531 11 2345


Q ss_pred             CCCCCEEEEEE
Q psy8018          62 IQDGDLVLLKR   72 (280)
Q Consensus        62 I~~gd~l~l~~   72 (280)
                      +++||.|.+..
T Consensus        78 L~~gDeV~i~P   88 (93)
T 3dwg_C           78 IADGDSVTILP   88 (93)
T ss_dssp             CCTTCEEEEEE
T ss_pred             CCCCCEEEEEC
Confidence            99999998876

>3psg_A Pepsinogen; hydrolase(acid proteinase zymogen); 1.65A {Sus scrofa} SCOP: b.50.1.2 PDB: 2psg_A 4pep_A* 3pep_A* 1f34_A* 1psa_A* 1yx9_A 5pep_A 1flh_A 1qrp_E* 1psn_A* 1pso_E* 3utl_A

Probab=84.12  E-value=1.8  Score=39.78  Aligned_cols=100  Identities=10%  Similarity=0.076  Sum_probs=58.2

Q ss_pred             EEEcCEE------EEEEEcCCCcceecCHHHHHHc----CCccccccceeee-eecCceeeEEeEEEEEEEEECCeEEE-
Q psy8018         154 CRVNGHP------VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGI-AKGVGVQRIIGRIHMVQIAIENDFLT-  221 (280)
Q Consensus       154 ~~InG~~------v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~-a~gvG~~~~~g~i~~~~i~IG~~~~~-  221 (280)
                      +.|||..      ..|+||||.+.+.++.+.++.+    |-....    .|. .......   .......+.+|+..++ 
T Consensus       241 i~v~g~~~~~~~~~~aiiDTGTs~~~lP~~~~~~i~~~i~a~~~~----~g~~~v~C~~~---~~lP~i~f~~~g~~~~l  313 (370)
T 3psg_A          241 ITMDGETIACSGGCQAIVDTGTSLLTGPTSAIANIQSDIGASENS----DGEMVISCSSI---DSLPDIVFTIDGVQYPL  313 (370)
T ss_dssp             EESSSSEEECTTCEEEEECTTCCSEEEEHHHHHHHHHHTTCEECT----TCCEECCGGGG---GGCCCEEEEETTEEEEE
T ss_pred             EEECCEEEecCCCceEEEcCCCCcEECCHHHHHHHHHHhCCcccC----CCcEEEECCCc---ccCCcEEEEECCEEEEE
Confidence            4567753      4799999999999998877765    222100    010 0000000   0112234555554333 


Q ss_pred             ------------eEEEEec--C---CCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ------------TSFSVLE--D---QPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ------------~~~~Vl~--~---~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                  |-+.+..  .   .+.-.|||..||+.+-.+.|+.++++-|...
T Consensus       314 ~~~~yi~~~~~~C~~~~~~~~~~~~~~~~~ILG~~Fl~~~y~vfD~~~~riGfA~a  369 (370)
T 3psg_A          314 SPSAYILQDDDSCTSGFEGMDVPTSSGELWILGDVFIRQYYTVFDRANNKVGLAPV  369 (370)
T ss_dssp             CHHHHEEECSSCEEESEEEECCCTTSCCEEEECHHHHTTEEEEEETTTTEEEEEEB
T ss_pred             CHHHhcccCCCEEEEEEEeCCCCCCCCCcEEeChHHhcceEEEEECCCCEEEEEEc
Confidence                        3222222  1   1123899999999999999999999988654

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=84.07  E-value=2.3  Score=29.08  Aligned_cols=55  Identities=20%  Similarity=0.300  Sum_probs=41.2

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+.+  ++ +..||.+|.+.+    ++++..-.+..||+.+..  ..-.+.-+++||.|.+..
T Consensus         5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~   59 (64)
T 2cu3_A            5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVA   59 (64)
T ss_dssp             TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEE
T ss_pred             CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEe
Confidence            66655  45 668999998876    566777778889999863  234556799999999876

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=83.99  E-value=2.5  Score=29.16  Aligned_cols=62  Identities=18%  Similarity=0.183  Sum_probs=42.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+++|+.++|+.  .+++...|+.+|-..+....+  ..---...||+...-+      +-+++||.|.+..
T Consensus         1 m~i~i~~p~g~~--~~~~~g~T~~dla~~i~~~l~--~~~vaa~vNg~lvdl~------~~L~~~~~Veivt   62 (73)
T 2kmm_A            1 MEVMVFTPKGEI--KRLPQGATALDFAYSLHSDLG--DHCIGAKVNHKLVPLS------YVLNSGDQVEVLS   62 (73)
T ss_dssp             CCEEEECTTCCE--EEECTTCBHHHHHHHHCSHHH--HTEEEEEETTEECCTT------CBCCSSSBEEEEE
T ss_pred             CeEEEEcCCCCE--EEcCCCCcHHHHHHHHhhccc--cceEEEEECCEEeCCC------cCcCCCCEEEEEE
Confidence            889999888876  567788999999887743321  1112234689866422      4577889888765

>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*

Probab=83.80  E-value=8  Score=34.51  Aligned_cols=105  Identities=13%  Similarity=0.171  Sum_probs=61.1

Q ss_pred             EEEEcCEE-----EEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE---EeEEEEEEEEEC-CeEEE--
Q psy8018         153 NCRVNGHP-----VKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI---IGRIHMVQIAIE-NDFLT--  221 (280)
Q Consensus       153 ~~~InG~~-----v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~---~g~i~~~~i~IG-~~~~~--  221 (280)
                      .+.|||..     ..++||||.+.+.++.+.++++--.  +...+.  ....|...-   ........+.++ +..+.  
T Consensus       200 ~i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i~~~--~~~~~~--~~~~~~~~~~~~C~~~p~i~f~f~~g~~~~vp  275 (342)
T 3pvk_A          200 SVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQIIKA--FNGKLT--QDSNGNSFYEVDCNLSGDVVFNFSKNAKISVP  275 (342)
T ss_dssp             EEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHHHHH--TTCEEE--ECTTSCEEEEECSCCCSEEEEEESTTCEEEEE
T ss_pred             EEEECCEEecCCCceEEEeCCCCCeecCHHHHHHHHHH--cCCeec--ccCCCceEEEEecCCCCceEEEECCCCEEEEc
Confidence            35678875     4699999999999999887776210  111100  000010000   000112244554 32221  


Q ss_pred             ------------------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         222 ------------------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       222 ------------------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                                        |-+.+..  .-..|||..||+.+-.+.|+.++++-|...+..
T Consensus       276 ~~~~~~~~~~~~g~~~~~C~~~i~~--~~~~ilG~~fl~~~y~vfD~~~~~igfA~~~~~  333 (342)
T 3pvk_A          276 ASEFAASLQGDDGQPYDKCQLLFDV--NDANILGDNFLRSAYIVYDLDDNEISLAQVKYT  333 (342)
T ss_dssp             GGGGEEC----------CEEESEEE--CTTCEECHHHHTTEEEEEETTTTEEEEEEBCCC
T ss_pred             HHHheeeccccCCCcCCeeEEEEee--CCCeEeCHHHHhcEEEEEECCCCEEEEEecCCC
Confidence                              2222222  124799999999999999999999999887664

>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}

Probab=83.16  E-value=6.3  Score=31.24  Aligned_cols=63  Identities=19%  Similarity=0.235  Sum_probs=43.9

Q ss_pred             cEEEEEeCCCccHHHHHHHHHHH----hCCCC----cceEEEE-C---CeeeCCC-------------cCCccccCCCCC
Q psy8018          11 ECFLLDVSEDLELENFKAFCEVQ----SGISA----QEIAIEF-Q---GNALVDN-------------KKTLKDYNIQDG   65 (280)
Q Consensus        11 ~~~~leV~~~~tV~~LK~~Ie~e----~gip~----~~Q~Li~-~---Gk~L~d~-------------~~tL~~~gI~~g   65 (280)
                      ..+++.|-..+||.++|++|-..    .|.|.    ++..|-+ .   |.+|.|.             -.||+.|+|.||
T Consensus        39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg  118 (126)
T 3kuz_A           39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG  118 (126)
T ss_dssp             CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred             CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence            46888999999999999987543    37764    3445544 1   2334321             126889999999


Q ss_pred             CEEEEEEe
Q psy8018          66 DLVLLKRV   73 (280)
Q Consensus        66 d~l~l~~~   73 (280)
                      ++|-+..+
T Consensus       119 atlal~kk  126 (126)
T 3kuz_A          119 STIKVFKK  126 (126)
T ss_dssp             CEEEEEEC
T ss_pred             CEEEEeeC
Confidence            99988763

>1t6e_X Xylanase inhibitor; two beta-barrel domain structure, hydrolase inhibitor; 1.70A {Triticum aestivum} SCOP: b.50.1.2 PDB: 1t6g_A 2b42_A 3hd8_A

Probab=83.04  E-value=2.4  Score=38.99  Aligned_cols=30  Identities=17%  Similarity=0.142  Sum_probs=27.1

Q ss_pred             ccccchhhhhcceEEEEecccEEEeeeeec
Q psy8018         233 DMLLGLDMLKRHQVQIAIENDFLTTSFSVL  262 (280)
Q Consensus       233 d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~  262 (280)
                      -.|||--||+.+-.+.|+.+++|-|.....
T Consensus       345 ~~ILGd~fl~~~yvvfD~~~~riGfA~~~~  374 (381)
T 1t6e_X          345 AVILGGAQMEDFVLDFDMEKKRLGFSRLPH  374 (381)
T ss_dssp             SEEECHHHHTTEEEEEETTTTEEEEEECCT
T ss_pred             eEEEChHHhCCcEEEEECCCCEEEEecccC
Confidence            489999999999999999999999987654

>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}

Probab=83.03  E-value=13  Score=28.16  Aligned_cols=71  Identities=21%  Similarity=0.196  Sum_probs=54.2

Q ss_pred             EEEEEcCCC---cEEEEEeCCCccHHHHHHHHHHHhCCCCc--ceEEEE--CCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           2 KVTVTSLDN---ECFLLDVSEDLELENFKAFCEVQSGISAQ--EIAIEF--QGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         2 ~ItV~~~~g---~~~~leV~~~~tV~~LK~~Ie~e~gip~~--~Q~Li~--~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+|...+.   ..+++.|..+.-|.-+..+|-+..+++.+  .--|-.  ..+-|.....||..|||+.+..++...
T Consensus        21 ~V~V~d~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp   98 (102)
T 2kmc_A           21 VVRVDHANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTP   98 (102)
T ss_dssp             EEEEECTTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEE
T ss_pred             EEEEecCCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccC
Confidence            577877553   56899999999999999998888877653  455554  233454455899999999999998875

>3c9x_A Trichoderma reesei aspartic protease; aspartic proteinase, aspartyl protease, hydrolase; 1.70A {Trichoderma reesei} PDB: 3c9y_A* 3emy_A*

Probab=82.71  E-value=2.8  Score=37.64  Aligned_cols=102  Identities=11%  Similarity=0.056  Sum_probs=56.9

Q ss_pred             EEEcCE-----EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceee--EEeEEEEEEEEECCeEEE-----
Q psy8018         154 CRVNGH-----PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQR--IIGRIHMVQIAIENDFLT-----  221 (280)
Q Consensus       154 ~~InG~-----~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~--~~g~i~~~~i~IG~~~~~-----  221 (280)
                      +.|+|.     +..++||||.+.+.++.+.++++--.. ....+.   ...|.-.  ..-......+.+|+..+.     
T Consensus       202 i~v~~~~~~~~~~~aiiDSGTt~~~lp~~~~~~i~~~i-~~a~~~---~~~~~~~~~C~~~~P~i~f~f~g~~~~ip~~~  277 (329)
T 3c9x_A          202 YSVGGGKLNRNSIDGIADTGTTLLLLDDNVVDAYYANV-QSAQYD---NQQEGVVFDCDEDLPSFSFGVGSSTITIPGDL  277 (329)
T ss_dssp             EEETTCCCCSCCEEEEECTTCCSEEECHHHHHHHHTTC-TTCEEE---TTTTEEEEETTCCCCCEEEEETTEEEEECGGG
T ss_pred             EEECCEeccCCCceEEEECCCCcEeCCHHHHHHHHHhC-CCcEEc---CCCCEEEEECCCCCCcEEEEECCEEEEECHHH
Confidence            456664     457999999999999999887762110 000000   0001000  000011223444443221     


Q ss_pred             ------------eEEEEecCC-CcccccchhhhhcceEEEEecccEEEeee
Q psy8018         222 ------------TSFSVLEDQ-PMDMLLGLDMLKRHQVQIAIENDFLTTSF  259 (280)
Q Consensus       222 ------------~~~~Vl~~~-~~d~ILG~D~L~~~~~~ID~~~~~L~i~~  259 (280)
                                  |-+.+.... .-..|||-.||+.+-.+.|+.+++|-|..
T Consensus       278 ~~~~~~~~~~~~C~~~i~~~~~~~~~ILG~~fl~~~y~vfD~~~~riGfA~  328 (329)
T 3c9x_A          278 LNLTPLEEGSSTCFGGLQSSSGIGINIFGDVALKAALVVFDLGNERLGWAQ  328 (329)
T ss_dssp             GEEEESSTTCSEEEESEEECTTTTSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             eeeeccCCCCCeEEEEEEcCCCCCcEEEChHHhccEEEEEECCCCEEeEec
Confidence                        222222211 23489999999999999999999988753

>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}

Probab=82.08  E-value=4.3  Score=37.53  Aligned_cols=29  Identities=17%  Similarity=0.248  Sum_probs=25.6

Q ss_pred             ccccchhhhhcceEEEEecccEEEe-eeee
Q psy8018         233 DMLLGLDMLKRHQVQIAIENDFLTT-SFSV  261 (280)
Q Consensus       233 d~ILG~D~L~~~~~~ID~~~~~L~i-~~~~  261 (280)
                      ..|||--||+.+-++.|+.+++|-| ...+
T Consensus       358 ~~ILG~~fl~~~yvvfD~~~~rIGf~A~~~  387 (403)
T 3aup_A          358 EITLGARQLEENLVVFDLARSRVGFSTSSL  387 (403)
T ss_dssp             SEEECHHHHTTSCEEEETTTTEEEEESSCG
T ss_pred             cEEEChHHhcCeEEEEECCCCEEEEecccc
Confidence            4799999999999999999999999 5443

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=81.95  E-value=8.3  Score=28.59  Aligned_cols=68  Identities=13%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             CEEEEEc-------C-CCcEEEEEeC--CCccHHHHHHHHHHHhCCC-Ccc------------eEEEECCeeeCCCcCCc
Q psy8018           1 MKVTVTS-------L-DNECFLLDVS--EDLELENFKAFCEVQSGIS-AQE------------IAIEFQGNALVDNKKTL   57 (280)
Q Consensus         1 M~ItV~~-------~-~g~~~~leV~--~~~tV~~LK~~Ie~e~gip-~~~------------Q~Li~~Gk~L~d~~~tL   57 (280)
                      |+|+|+.       . +....+++++  +..||.+|.+.+.+...-. +.-            -.+.-||+-..    -+
T Consensus         2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~----~~   77 (99)
T 2qjl_A            2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE----LE   77 (99)
T ss_dssp             EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG----GG
T ss_pred             cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc----cc
Confidence            6788872       2 2345677887  6789999999998775211 111            11334555321    11


Q ss_pred             --cccCCCCCCEEEEEE
Q psy8018          58 --KDYNIQDGDLVLLKR   72 (280)
Q Consensus        58 --~~~gI~~gd~l~l~~   72 (280)
                        .++-+++||.|.+..
T Consensus        78 ~~~d~~L~dgDeVa~~P   94 (99)
T 2qjl_A           78 GEKDYILEDGDIISFTS   94 (99)
T ss_dssp             TGGGCBCCTTCEEEEEE
T ss_pred             CCCCcCcCCCCEEEEEC
Confidence              245699999998865

>2qp8_A Beta-secretase 1; BACE1, protease, alternative splicing, aspartyl protease, glycoprotein, hydrolase, membrane, transmembrane, zymogen; HET: TAR SC7; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 2qk5_A* 2qmf_A* 2qmg_A* 2qmd_A* 4djx_A* 3l59_A* 3l5b_A* 3l5c_A* 3l58_A* 3l5d_A* 3l5f_A* 4dju_A* 4djv_A* 4djw_A* 3l5e_A* 4djy_A* 2zhv_A 2zhs_A 2zhr_A 2zhu_A ...

Probab=81.56  E-value=3.8  Score=37.73  Aligned_cols=88  Identities=14%  Similarity=0.247  Sum_probs=54.5

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCccccc----cce------eeeeecCceeeEEeEEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLID----TRW------AGIAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d----~r~------~g~a~gvG~~~~~g~i~~~~i~  214 (280)
                      ...++++.|+  ++++++++|||++.+-+. ..|.. +  ....+    ..+      -.+.+|-|+.  .|.+....+.
T Consensus        21 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~c~~-~--~~~y~~~~SsT~~~~~~~~~i~Yg~Gs~--~G~~~~Dtv~   95 (395)
T 2qp8_A           21 QGYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPHPF-L--HRYYQRQLSSTYRDLRKGVYVPYTQGKW--EGELGTDLVS   95 (395)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEECSCCTT-C--SCCCCGGGCTTCEEEEEEEEEECSSCEE--EEEEEEEEEE
T ss_pred             ceEEEEEEecCCCceEEEEEecCCCceEEECCCCcc-c--cCCcCcccCCCceeCCceEEEEECCcEE--EEEEEeEEEE
Confidence            3578999998  899999999999999874 33422 1  11111    111      1134565643  6888888999


Q ss_pred             EC-CeEE--EeEEEEec--------CCCcccccchhh
Q psy8018         215 IE-NDFL--TTSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       215 IG-~~~~--~~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      +| +...  ...|....        ....|+||||-+
T Consensus        96 ig~g~~~~~~~~~~~~~~~~~~f~~~~~~dGIlGLg~  132 (395)
T 2qp8_A           96 IPHGPNVTVRANIAAITESDKFFINGSNWEGILGLAY  132 (395)
T ss_dssp             CTTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECSC
T ss_pred             ECCCCCceEEEEEEEEEccCcccccccCccceEEcCc
Confidence            98 4322  22333221        235799999875

>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*

Probab=81.20  E-value=6.4  Score=39.18  Aligned_cols=64  Identities=23%  Similarity=0.342  Sum_probs=46.9

Q ss_pred             cEEEEEeCCCccHHHHHHHHHHH--hCCCC------cceEEEE----CCe-eeCCCc------------CCccccCCCCC
Q psy8018          11 ECFLLDVSEDLELENFKAFCEVQ--SGISA------QEIAIEF----QGN-ALVDNK------------KTLKDYNIQDG   65 (280)
Q Consensus        11 ~~~~leV~~~~tV~~LK~~Ie~e--~gip~------~~Q~Li~----~Gk-~L~d~~------------~tL~~~gI~~g   65 (280)
                      ..+++.|-..+||.++|++|-..  .|.|.      ++..|-+    .|+ +|.|.+            .||+.|+|.||
T Consensus       274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg  353 (644)
T 3hm6_X          274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG  353 (644)
T ss_dssp             CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred             CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence            45788999999999999998755  35554      4556655    233 355522            37999999999


Q ss_pred             CEEEEEEec
Q psy8018          66 DLVLLKRVQ   74 (280)
Q Consensus        66 d~l~l~~~~   74 (280)
                      .+|.|+.++
T Consensus       354 a~v~L~p~~  362 (644)
T 3hm6_X          354 ATVALVPCL  362 (644)
T ss_dssp             CEEEEEEC-
T ss_pred             cEEEEEecc
Confidence            999998873

>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*

Probab=80.75  E-value=8.9  Score=38.07  Aligned_cols=65  Identities=25%  Similarity=0.326  Sum_probs=46.9

Q ss_pred             CcEEEEEeCCCccHHHHHHHHHHH--hCCC------CcceEEEE----CCe-eeCCCc------------CCccccCCCC
Q psy8018          10 NECFLLDVSEDLELENFKAFCEVQ--SGIS------AQEIAIEF----QGN-ALVDNK------------KTLKDYNIQD   64 (280)
Q Consensus        10 g~~~~leV~~~~tV~~LK~~Ie~e--~gip------~~~Q~Li~----~Gk-~L~d~~------------~tL~~~gI~~   64 (280)
                      .+.+++.|-..+||.++|++|-..  .|.|      +++..|-+    .|+ +|.|.+            .||+.|+|.|
T Consensus       246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D  325 (627)
T 3ig3_A          246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD  325 (627)
T ss_dssp             -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred             CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence            467889999999999999998765  3444      45666755    233 344411            3699999999


Q ss_pred             CCEEEEEEec
Q psy8018          65 GDLVLLKRVQ   74 (280)
Q Consensus        65 gd~l~l~~~~   74 (280)
                      |.+|.|+.++
T Consensus       326 ga~v~L~p~~  335 (627)
T 3ig3_A          326 GSLVALVPKQ  335 (627)
T ss_dssp             TCEEEEEEC-
T ss_pred             CceEEEEecc
Confidence            9999998874

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=80.67  E-value=11  Score=27.10  Aligned_cols=56  Identities=16%  Similarity=0.073  Sum_probs=40.4

Q ss_pred             cEEEEEeCCCccHHHHHHHHHHHhC-CC----------CcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018          11 ECFLLDVSEDLELENFKAFCEVQSG-IS----------AQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus        11 ~~~~leV~~~~tV~~LK~~Ie~e~g-ip----------~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      ....+++++..||.+|.+.+..... +.          ...-.+.-||+....+      +-+++||.|.+..
T Consensus        18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~~------~~l~~gDeV~i~P   84 (89)
T 3po0_A           18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAALG------EATAAGDELALFP   84 (89)
T ss_dssp             SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCTT------SBCCTTCEEEEEC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCCC------cccCCCCEEEEEC
Confidence            5678899888999999999987642 10          0124666799887542      3599999998865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	280
d1v5oa_	102	d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus mu	3e-11
d1wx9a1	73	d.15.1.1 (A:8-80) Large proline-rich protein BAT3	3e-10
d1v2ya_	105	d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik	1e-09
d1wgga_	96	d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolas	1e-09
d1wh3a_	87	d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like	1e-09
d2bwfa1	73	d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyc	2e-09
d1uela_	95	d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homol	3e-09
d1ogwa_	76	d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [Tax	3e-09
d1bt0a_	73	d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis t	1e-08
d1oqya4	77	d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 h	4e-08
d1v6ea_	95	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	5e-08
d1wiaa_	95	d.15.1.1 (A:) Ubiquitin-like protein bab25500 (201	7e-08
d1wxva1	81	d.15.1.1 (A:7-87) Bag-family molecular chaperone r	8e-08
d1wy8a1	76	d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING fing	1e-07
d1z2ma2	76	d.15.1.1 (A:79-154) Interferon-induced 15 kDa prot	1e-07
d2faza1	76	d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING fing	2e-07
d2zeqa1	78	d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin	3e-07
d2uyzb1	77	d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human	4e-07
d1j8ca_	103	d.15.1.1 (A:) Ubiquitin-like N-terminal domain of	8e-07
d1z2ma1	76	d.15.1.1 (A:3-78) Interferon-induced 15 kDa protei	2e-06
d1uh6a_	100	d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mous	2e-06
d1v5ta_	90	d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus mu	3e-06
d1yqba1	84	d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapien	6e-06
d1ttna1	80	d.15.1.1 (A:21-100) Dendritic cell-derived ubiquit	8e-06
d1wx8a1	83	d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus muscul	1e-05
d1zkha1	86	d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-t	2e-05
d1wjua_	100	d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human	3e-05
d1wgha_	116	d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mous	6e-05
d1wjna_	97	d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse	7e-05
d1v86a_	95	d.15.1.1 (A:) hypothetical D7wsu128e protein {Mous	7e-05
d2c9wb1	103	d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)	9e-05
d1wgda_	93	d.15.1.1 (A:) Homocysteine-responsive endoplasmic	1e-04
d1t0ya_	90	d.15.1.1 (A:) Ubiquitin-like domain of tubulin fol	2e-04
d1m94a_	73	d.15.1.1 (A:) Ubiquitin-like modifier protein hub1	2e-04
d1euvb_	79	d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yea	3e-04
d1we6a_	111	d.15.1.1 (A:) Splicing factor 3 subunit 1, C-termi	0.002

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.6 bits (136), Expect = 3e-11
 Identities = 29/86 (33%), Positives = 44/86 (51%), Gaps = 4/86 (4%)

Query: 1  MKVTVT----SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKT 56
          M +TV      L    F L V+ D EL NF+  CE++SG+ A+E  I +    L D+  +
Sbjct: 8  MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67

Query: 57 LKDYNIQDGDLVLLKRVQVARTSNPS 82
          L  Y ++DGD+V+L +        P 
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPG 93

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 3e-10
 Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 1/72 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V V +LD++     V   + ++ FK        I +++  + +QG  L D+ K L++Y
Sbjct: 1  LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEY 59

Query: 61 NIQDGDLVLLKR 72
          N+    + L++R
Sbjct: 60 NVGGKVIHLVER 71

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 105

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 16/90 (17%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQE---------------IAIEF 45
          M V V  +D E   + V ++  + + K   +    +  +                  +  
Sbjct: 8  MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTS 67

Query: 46 QGNALVDNKKTLKDYNIQDGD-LVLLKRVQ 74
           G  L +++K L+DY I++ D +  +K++ 
Sbjct: 68 AGEKLTEDRKKLRDYGIRNRDEVSFIKKLG 97

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.3 bits (125), Expect = 1e-09
 Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 9/89 (10%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
            VTV     +   ++++ D     FKA     +G+      +  +G  L D+     + 
Sbjct: 8  YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGNI 65

Query: 61 NIQDGD-LVLLKRVQ------VARTSNPS 82
           +++G  ++++           A+TS PS
Sbjct: 66 KMKNGMTVLMMGSADALPEEPSAKTSGPS 94

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V V + D   +   ++ +  +   K   E Q G+  ++  +EFQG  L D    L  Y
Sbjct: 8  IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIY 66

Query: 61 NIQDGD-LVLLKRVQVARTS 79
           IQD D L+L K+     +S
Sbjct: 67 GIQDSDTLILSKKKGSGPSS 86

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.9 bits (122), Expect = 2e-09
 Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 2/70 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + + + S  ++ + ++V+ +  +  FK      +GI      + + G  L D+ +T++ Y
Sbjct: 2  LNIHIKSGQDK-WEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESY 59

Query: 61 NIQDGDLVLL 70
          +IQDG  V L
Sbjct: 60 HIQDGHSVHL 69

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (122), Expect = 3e-09
 Identities = 18/87 (20%), Positives = 40/87 (45%), Gaps = 6/87 (6%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCE---VQSGISAQEIAIEFQGNALVDNKKTL 57
          M+VT+ +L  + F +D+  +  ++  K   E    +         + + G  L D+   L
Sbjct: 1  MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDT-AL 59

Query: 58 KDYNIQDGD--LVLLKRVQVARTSNPS 82
          K+Y I + +  +V++ + +   T  P+
Sbjct: 60 KEYKIDEKNFVVVMVTKPKAVSTPAPA 86

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 3e-09
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M++ V +L  +   L+V     +EN KA  + + GI   +  + F G  L D  +TL DY
Sbjct: 1  MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDY 59

Query: 61 NIQDGDLVLL 70
          NIQ    + L
Sbjct: 60 NIQKESTLHL 69

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 49.1 bits (117), Expect = 1e-08
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M + V +L  +   +D+     ++  K   E + GI   +  + + G  L D+ KT KDY
Sbjct: 1  MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADD-KTAKDY 59

Query: 61 NIQDGDLVLL 70
          NI+ G ++ L
Sbjct: 60 NIEGGSVLHL 69

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (113), Expect = 4e-08
 Identities = 14/73 (19%), Positives = 33/73 (45%), Gaps = 4/73 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG---ISAQEIAIEFQGNALVDNKKTL 57
          + +T+ +L  + F + +  D  ++  K   E + G          + + G  L D+   +
Sbjct: 3  VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV-PI 61

Query: 58 KDYNIQDGDLVLL 70
          +DY I + + V++
Sbjct: 62 RDYRIDEKNFVVV 74

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 7/77 (9%)

Query: 1  MKVTVTS-LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGN------ALVDN 53
          + V ++S L++       S  L +  FK   E+  G  A  + +E  G        L   
Sbjct: 8  VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67

Query: 54 KKTLKDYNIQDGDLVLL 70
             L  Y + DG  + +
Sbjct: 68 DALLGSYPVDDGCRIHV 84

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (112), Expect = 7e-08
 Identities = 16/83 (19%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + V +  L++   L     +  +   K+           ++ + +QG  L D  +TL   
Sbjct: 8  INVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSL 64

Query: 61 NIQDGD-LVLLKRVQVARTSNPS 82
          NI +   +   +    A  S PS
Sbjct: 65 NITNNCVIHCHRSPPGAAVSGPS 87

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 81

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (111), Expect = 8e-08
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 1  MKVTVTS----LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKT 56
          + VTVT      D        S +  +++     E   G+      + F+G +L + +  
Sbjct: 2  LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61

Query: 57 LKDYNIQDGDLVLL 70
          L    IQDG  V+L
Sbjct: 62 LSALGIQDGCRVML 75

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (109), Expect = 1e-07
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 1  MKVTVTSLD--NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
          M + V ++D    C + DVS    +E  +        +  +   + ++G  L +   TL 
Sbjct: 1  MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGY-TLF 59

Query: 59 DYNIQDGDLVLL 70
          DY++   D++ L
Sbjct: 60 DYDVGLNDIIQL 71

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 11/70 (15%), Positives = 24/70 (34%), Gaps = 1/70 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + + V +        +V     + + K       G+      + F+G  L D    L +Y
Sbjct: 4  LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEY 62

Query: 61 NIQDGDLVLL 70
           ++    V +
Sbjct: 63 GLKPLSTVFM 72

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 2e-07
 Identities = 13/72 (18%), Positives = 30/72 (41%), Gaps = 3/72 (4%)

Query: 1  MKVTVTSLD--NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
          M + V ++D      +  +S   ++E  +   +    +      + ++G  + D   TL 
Sbjct: 1  MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLF 59

Query: 59 DYNIQDGDLVLL 70
          DY ++  D + L
Sbjct: 60 DYEVRLNDTIQL 71

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} Length = 78

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 3e-07
 Identities = 14/70 (20%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          M V V    +  F ++V  D  +   K     + G+ A ++ + F G  L ++  T+++ 
Sbjct: 3  MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNH-LTVQNC 61

Query: 61 NIQDGDLVLL 70
          +++   +V +
Sbjct: 62 DLEQQSIVHI 71

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (106), Expect = 4e-07
 Identities = 14/68 (20%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          +K+ V   D+      V     L+  K     + G+    +   F+G  + DN  T K+ 
Sbjct: 3  IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKEL 61

Query: 61 NIQDGDLV 68
           +++ D++
Sbjct: 62 GMEEEDVI 69

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 8e-07
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           +KVTV +   E     V E+  ++ FK     +      ++ + F G  L D   TL  +
Sbjct: 33  IKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQD-TLIQH 90

Query: 61  NIQDGDLVLL 70
            I DG  V L
Sbjct: 91  GIHDGLTVHL 100

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (100), Expect = 2e-06
 Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 1/69 (1%)

Query: 3  VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALV-DNKKTLKDYN 61
          +TV  L    F + +S  + +   KA    + G+ A +  +    + +   ++  L    
Sbjct: 3  LTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQG 62

Query: 62 IQDGDLVLL 70
          +  G  VLL
Sbjct: 63 LGPGSTVLL 71

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 2e-06
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V       +   +  + D  + + K     Q+G    +I ++        +  +L DY
Sbjct: 29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIF-KDHVSLGDY 87

Query: 61 NIQDGDLVLL 70
           I DG  + L
Sbjct: 88 EIHDGMNLEL 97

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (100), Expect = 3e-06
 Identities = 10/73 (13%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQE---IAIEFQGNALVDNKKTL 57
          + + V     E  +  +SED  + + K F +  +G+  +    + ++ +G    ++   L
Sbjct: 8  LPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-VKL 66

Query: 58 KDYNIQDGDLVLL 70
              ++    +++
Sbjct: 67 GALKLKPNTKIMM 79

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (97), Expect = 6e-06
 Identities = 14/82 (17%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          +KVTV +  ++     V++   ++  K     +      ++ + F G  ++ +  +L   
Sbjct: 8  IKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGK-ILKDPDSLAQC 65

Query: 61 NIQDGDLVLLKRVQVARTSNPS 82
           ++DG  V L    V +  + +
Sbjct: 66 GVRDGLTVHL----VIKRQHRA 83

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (96), Expect = 8e-06
 Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 4/77 (5%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
           ++ +     +   L V     + + K       G+        F G  L  +K   ++ 
Sbjct: 4  CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEEL 62

Query: 61 NIQDGD---LVLLKRVQ 74
           I       +++ + VQ
Sbjct: 63 KIPKDYVVQVIVSQPVQ 79

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} Length = 83

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V+V +  +      ++E+  +  FK         +A  + + F G  L  ++  L   
Sbjct: 11 IRVSVKTPQDC-HEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKIL-RDQDILSQR 68

Query: 61 NIQDGDLVLL 70
           I DG  V +
Sbjct: 69 GILDGSTVHV 78

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 86

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 11/63 (17%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 8  LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDL 67
          L+ +  +  +    ++   K      +G+ A +  ++++G  + D+  +L  YN+ +G +
Sbjct: 19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDSN-SLAYYNMANGAV 77

Query: 68 VLL 70
          + L
Sbjct: 78 IHL 80

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 10/82 (12%), Positives = 28/82 (34%), Gaps = 3/82 (3%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + +      +   LL+    +     ++      G+    I I      L   K   ++ 
Sbjct: 20 VFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTL-EEQ 78

Query: 61 NIQDGDLVLLKRVQVARTSNPS 82
           +      ++  +++ ++S PS
Sbjct: 79 GVAHNVKAMV--LELKQSSGPS 98

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 116

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.6 bits (92), Expect = 6e-05
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 9/95 (9%)

Query: 1   MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQ--------SGISAQEIAIEFQGNALVD 52
           + + +  +  +      S +    +                   S   + + +QG  L  
Sbjct: 17  INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHG 76

Query: 53  NKKTLKDYNIQDGDLVLLKRVQVARTSNPSDDFAR 87
           N  TL    +  G   ++  V       P+    R
Sbjct: 77  NV-TLGALKLPFGKTTVMHLVARETLPEPNSQGQR 110

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (90), Expect = 7e-05
 Identities = 11/94 (11%), Positives = 38/94 (40%), Gaps = 18/94 (19%)

Query: 1  MKVTVT-----SLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNAL----- 50
            +T+        + +     + + + ++  K        +   E+ + ++ + +     
Sbjct: 8  QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREI 67

Query: 51 --VDNKKTLKDYNIQDGDLVLLKRVQVARTSNPS 82
             ++ + L+ Y++++GD +L++       S PS
Sbjct: 68 ELENDLQPLQFYSVENGDCLLVRW------SGPS 95

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.8 bits (90), Expect = 7e-05
 Identities = 10/70 (14%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + + +   +     + V  D      K      +G+      + ++G   V   KTL++ 
Sbjct: 18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL--VPEDKTLREI 74

Query: 61 NIQDGDLVLL 70
           +  G  +++
Sbjct: 75 KVTSGAKIMV 84

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (90), Expect = 9e-05
 Identities = 13/76 (17%), Positives = 17/76 (22%), Gaps = 1/76 (1%)

Query: 13 FLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR 72
             D  E   +   K   E        E  +      L D  KTL +             
Sbjct: 13 IFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAP 71

Query: 73 VQVARTSNPSDDFARI 88
            V       D F  +
Sbjct: 72 ATVGLAFRADDTFEAL 87

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (88), Expect = 1e-04
 Identities = 13/86 (15%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 1  MKVTVTSLDN--ECFLLDVSEDLELENFKAFCE--VQSGISAQEIAIEFQGNALVDNKKT 56
          + + V S +       L       + + KA            ++  + + G  L+D++  
Sbjct: 8  VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDHQ-C 66

Query: 57 LKDYNIQDGDLVLLKRVQVARTSNPS 82
          L+D   +     +L  V   ++   S
Sbjct: 67 LRDLLPKQEKRHVLHLVCNVKSGPSS 92

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 90

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.5 bits (87), Expect = 2e-04
 Identities = 17/85 (20%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 5  VTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGN------ALVDNKKTLK 58
           T+  +          + L + K   E+  G +   + I+           L D  K+LK
Sbjct: 10 TTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLK 69

Query: 59 DYNIQDGDLVLLKRVQVARTSNPSD 83
          D  ++DG  +      V  T    D
Sbjct: 70 DLGVRDGYRIHA----VDVTGGNED 90

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 73

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.0 bits (85), Expect = 2e-04
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          ++V V     +   +    +  + +FK    +Q G    +I ++    +++ +  +L+DY
Sbjct: 2  IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKG-GSVLKDHISLEDY 60

Query: 61 NIQDGDLVLL 70
           + D   + L
Sbjct: 61 EVHDQTNLEL 70

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Length = 79

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

 Score = 36.7 bits (85), Expect = 3e-04
 Identities = 10/68 (14%), Positives = 28/68 (41%), Gaps = 2/68 (2%)

Query: 1  MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDY 60
          + + V+   +E F   + +   L         + G     +   + G  +  ++ T +D 
Sbjct: 5  INLKVSDGSSEIFF-KIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-TPEDL 62

Query: 61 NIQDGDLV 68
          +++D D++
Sbjct: 63 DMEDNDII 70

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 111

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 3/72 (4%)

Query: 1   MKVTVTSLDN-ECFLLDV-SEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLK 58
           ++V+  + ++ +   + V S    + + K     +  I A +  +       + +  +L 
Sbjct: 30  IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSG-KAGFLKDNMSLA 88

Query: 59  DYNIQDGDLVLL 70
            YN+  G+++ L
Sbjct: 89  HYNVGAGEILTL 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	280
d1bt0a_	73	Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI	99.85
d1wh3a_	87	2'-5'-oligoadenylate synthetase-like protein, OASL	99.84
d1ogwa_	76	Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1z2ma2	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.83
d2zeqa1	78	Ubiquitin-like domain of parkin {Mouse (Mus muscul	99.83
d2faza1	76	Ubiquitin-like PHD and RING finger domain-containi	99.82
d1uela_	95	Ubiquitin-like domain of Rad23 homolog B (Hhr23B)	99.81
d1wy8a1	76	Ubiquitin-like PHD and RING finger domain-containi	99.81
d1v5oa_	102	1700011n24rik protein {Mouse (Mus musculus) [TaxId	99.81
d1ttna1	80	Dendritic cell-derived ubiquitin-like protein {Hum	99.8
d1wx9a1	73	Large proline-rich protein BAT3 {Human (Homo sapie	99.8
d1m94a_	73	Ubiquitin-like modifier protein hub1 {Baker's yeas	99.79
d1oqya4	77	Ubiquitin-like domain of Rad23 homolog A (Hhr23a)	99.79
d1z2ma1	76	Interferon-induced 15 kDa protein {Human (Homo sap	99.79
d2bwfa1	73	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.78
d1yqba1	84	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1v2ya_	105	Ubiquitin-like protein 3300001g02rik {Mouse (Mus m	99.74
d1j8ca_	103	Ubiquitin-like N-terminal domain of PLIC-2 {Human	99.73
d1uh6a_	100	Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu	99.72
d1wx8a1	83	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	99.72
d1zkha1	86	Splicing factor 3 subunit 1, C-terminal domain {Hu	99.7
d1wiaa_	95	Ubiquitin-like protein bab25500 (2010008E23Rik) {M	99.69
d1wxva1	81	Bag-family molecular chaperone regulator-1 {Human	99.69
d1wgga_	96	Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M	99.68
d1wgha_	116	Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu	99.65
d1se9a_	101	Hypothetical protein At3g01050 {Thale cress (Arabi	99.65
d1wjua_	100	NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens	99.64
d1v5ta_	90	8430435i17rik protein {Mouse (Mus musculus) [TaxId	99.62
d1wgda_	93	Homocysteine-responsive endoplasmic reticulum-resi	99.61
d1v86a_	95	hypothetical D7wsu128e protein {Mouse (Mus musculu	99.6
d1we6a_	111	Splicing factor 3 subunit 1, C-terminal domain {Th	99.6
d2c9wb1	103	Elongin B {Human (Homo sapiens) [TaxId: 9606]}	99.53
d1wjna_	97	Tubulin-folding protein TbcE {Mouse (Mus musculus)	99.49
d1v6ea_	95	Ubiquitin-like domain of tubulin folding cofactor	99.49
d1euvb_	79	SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy	99.39
d2uyzb1	77	SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax	99.34
d1t0ya_	90	Ubiquitin-like domain of tubulin folding cofactor	99.29
d1x1ma1	94	Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta	99.28
d2fmba_	104	EIAV protease {Equine infectious anemia virus [Tax	98.91
d4fiva_	113	Feline immunodeficiency virus (FIV) protease {Feli	98.72
d1wf9a1	94	NPL4-like protein 1 {Thale cress (Arabidopsis thal	98.67
d1wm3a_	72	SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}	98.65
d2nmza1	99	Human immunodeficiency virus type 1 protease {Huma	98.54
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	98.42
d1nsoa_	107	Mason-Pfizer monkey virus protease {Simian retrovi	98.38
d3ecga1	99	Human immunodeficiency virus type 2 (HIV-2) protea	98.36
d1hvca_	203	Human immunodeficiency virus type 1 protease {Huma	97.72
d2al3a1	76	Tether containing UBX domain for GLUT4 (Tug) {Mous	97.24
d1h8ca_	82	Fas-associated factor 1, Faf1 {Human (Homo sapiens	97.23
d1i42a_	89	p47 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.05
d2pmaa1	141	Uncharacterized protein LPG0085 {Legionella pneumo	96.9
d2rspa_	124	Rous sarcoma virus protease {Rous sarcoma virus, s	96.71
d1wj4a_	124	Hypothetical protein KIAA0794 {Human (Homo sapiens	96.38
d2cr5a1	96	UBX domain-containing protein 6 (Reproduction 8) {	96.18
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	94.53
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	93.87
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	92.93
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	92.86
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	90.99
d3cmsa_	323	Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId	90.14
d1wkra_	340	Acid protease {Irpex lacteus (Polyporus tulipifera	89.29
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	89.25
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	88.61
d1oewa_	330	Endothiapepsin {Chestnut blight fungus (Endothia p	88.42
d1mppa_	357	Pepsin {Mucor pusillus [TaxId: 4840]}	87.87
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	87.85
d1y8xb1	92	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	87.56
d1eaga_	342	Acid protease {Yeast (Candida albicans) [TaxId: 54	87.17
d2apra_	325	Acid protease {Bread mold (Rhizopus chinensis) [Ta	87.15
d1dpja_	329	Acid protease {Baker's yeast (Saccharomyces cerevi	86.88
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	86.45
d1j71a_	334	Acid protease {Yeast (Candida tropicalis) [TaxId:	85.79
d1bxoa_	323	Acid protease {Fungus (Penicillium janthinellum),	85.73
d1izea_	323	Acid protease {Fungus (Aspergillus oryzae) [TaxId:	85.46
d1t6ex_	381	Xylanase inhibitor TAXI-I {Wheat (Triticum aestivu	85.46
d1smra_	335	Chymosin (synonym: renin) {Mouse (Mus musculus) [T	85.27
d3psga_	370	Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}	85.2
d1am5a_	324	Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId:	85.03
g1htr.1	372	Pepsin(ogen) {Human (Homo sapiens), progastricsin	84.78
d2qp8a1	387	beta-secretase (memapsin) {Human (Homo sapiens) [T	84.54
d1wxma1	73	A-Raf proto-oncogene serine/threonine-protein kina	84.26
d2qp8a1	387	beta-secretase (memapsin) {Human (Homo sapiens) [T	83.72
d1hrna_	337	Chymosin (synonym: renin) {Human (Homo sapiens) [T	83.48
d2cu3a1	63	Uncharacterised protein TTHA0675 {Thermus thermoph	82.92
d1miqa_	373	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	82.87
g1lya.1	338	Cathepsin D {Human (Homo sapiens) [TaxId: 9606]}	81.84
d1oeya_	82	Neutrophil cytosol factor 2 (p67phox component of	81.57
d2bjua1	329	Plasmepsin (a hemoglobin-degrading enzyme) {Plasmo	81.26
d1qdma2	337	Plant acid proteinase, phytepsin {Barley (Hordeum	80.81
d1tygb_	65	Thiamin biosynthesis sulfur carrier protein ThiS {	80.31

>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Rub1
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=2.4e-21  Score=141.09  Aligned_cols=72  Identities=28%  Similarity=0.458  Sum_probs=69.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+||+++|++++++|+|++||++||++|++++|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.|
T Consensus         1 M~I~Vk~~~G~~~~l~V~~~~tV~~lK~~i~~~~gi~~~~qrLi~~Gk~L~d~-~tL~~y~I~~~sti~lvlr   72 (73)
T d1bt0a_           1 MLIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADD-KTAKDYNIEGGSVLHLVLA   72 (73)
T ss_dssp             CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChHHEEEEECCeEcCCC-CcHHHcCCCCCCEEEEEee
Confidence            99999999999999999999999999999999999999999999999999975 8999999999999999874

>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 2'-5'-oligoadenylate synthetase-like protein, OASL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=5e-21  Score=144.08  Aligned_cols=72  Identities=28%  Similarity=0.404  Sum_probs=70.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++|+.++++|++++||.+||++|+.++|||+++|+|+|+||+|.|+ +||++|||++|++|+|+.+
T Consensus         8 mqI~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~-~tL~~y~I~~~stl~l~~r   79 (87)
T d1wh3a_           8 IQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIYGIQDSDTLILSKK   79 (87)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSS-SBHHHHTCCTTEEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCcCcHHHHHHHHHHHHCcChHHeEEEeeceEcCCC-CcHHHcCCCCCCEEEEEec
Confidence            89999999999999999999999999999999999999999999999999975 8999999999999999987

>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=8.1e-21  Score=139.33  Aligned_cols=72  Identities=32%  Similarity=0.448  Sum_probs=70.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++|+.++++|++++||.+||++|+.+.|+|+++|+|+|+|++|.|+ .||++|||++|++|+|+.|
T Consensus         1 MqI~Vk~l~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~Gk~L~d~-~tL~~y~i~~~s~I~L~~r   72 (76)
T d1ogwa_           1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLR   72 (76)
T ss_dssp             CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEcCCCCEEEEEECCCCcHHHHHHhhhhhcCCChHHEEeEECCeEcCCC-CCHHHcCCCCCCEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999975 8999999999999999886

>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1e-20  Score=138.76  Aligned_cols=72  Identities=15%  Similarity=0.243  Sum_probs=69.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|++++++|++++||++||++|++++|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.|
T Consensus         4 ~qi~Vk~~~G~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~qrL~~~gk~L~d~-~tL~~y~I~~~sti~l~lR   75 (76)
T d1z2ma2           4 LSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLR   75 (76)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHhcCChhHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEEe
Confidence            79999999999999999999999999999999999999999999999999976 8999999999999999874

>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of parkin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=7.5e-21  Score=140.44  Aligned_cols=72  Identities=19%  Similarity=0.350  Sum_probs=69.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++.+|++++++|++++||.+||++|++.+|||+++|+|+|+|++|.|+ +||++|||++|++|+|+.|
T Consensus         3 M~I~Vk~~~g~t~~l~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~-~tL~~y~I~~~sti~lv~R   74 (78)
T d2zeqa1           3 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNH-LTVQNCDLEQQSIVHIVQR   74 (78)
T ss_dssp             EEEEEESSSSSCEEEEECTTCBHHHHHHHHHHHHTCCGGGEEEEETTEEECTT-CBGGGSSCCTTCEEEEEES
T ss_pred             eEEEEEcCCCCEEEEEEcccccHHHHHHHHHHHHCcChhHeEEEEeeeEcCCC-CCHHHcCCCCCCEEEEEec
Confidence            89999999999999999999999999999999999999999999999999875 8999999999999999886

>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.8e-20  Score=137.72  Aligned_cols=72  Identities=19%  Similarity=0.274  Sum_probs=68.6

Q ss_pred             CEEEEEcCCCc-EEEEE-eCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNE-CFLLD-VSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~-~~~le-V~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++|+ +++++ |++++||++||++|+++.|||+++|+|+|+|+.|.|+ +||++|||++|++|+|+.|
T Consensus         1 M~I~Vktl~Gk~t~~l~~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~y~I~~~sti~lv~r   74 (76)
T d2faza1           1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLFDYEVRLNDTIQLLVR   74 (76)
T ss_dssp             EEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCcEEEEecCCCCCCHHHHHHHHHHHHCcChHHeEEEEeeEeccCC-CcHHHcCCCCCCEEEEEEE
Confidence            99999999995 88986 9999999999999999999999999999999999986 8999999999999999886

>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog B (Hhr23B)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=8.7e-20  Score=139.25  Aligned_cols=73  Identities=23%  Similarity=0.481  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhC---CCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG---ISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~g---ip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      |+|+|++++|++++++|++++||++||++|+++.|   +|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.++
T Consensus         1 M~I~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~~~~i~~~~qrLi~~Gk~L~d~-~tL~~y~I~~~s~i~lv~~~   76 (95)
T d1uela_           1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD-TALKEYKIDEKNFVVVMVTK   76 (95)
T ss_dssp             CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTT-SBGGGGTCCSSSEEEEEESS
T ss_pred             CEEEEEeCCCCEEEEEECCCccHHHHHHHHHhhhcccCCCccceEEEECCeEccCC-CcHHHcCCCCCCEEEEEECC
Confidence            99999999999999999999999999999999875   899999999999999986 89999999999999998863

>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like PHD and RING finger domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=4.4e-20  Score=135.67  Aligned_cols=72  Identities=21%  Similarity=0.308  Sum_probs=68.2

Q ss_pred             CEEEEEcCCC-cEEEE-EeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDN-ECFLL-DVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g-~~~~l-eV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++| +++++ +|+++.||++||++|++++|||+++|+|+|+|++|.|+ +||++|||++|++|+|+.|
T Consensus         1 M~I~Vk~l~G~~t~~~~~v~~~~TV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~-~tL~~y~I~~~s~i~lv~r   74 (76)
T d1wy8a1           1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLFDYDVGLNDIIQLLVR   74 (76)
T ss_dssp             EEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSS-SBHHHHTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCceEEEeccCCCChHHHHHHHHHHHHCCCchhcEEEEEeeEecCC-CCHHHcCCCCCCEEEEEEc
Confidence            8999999998 57887 59999999999999999999999999999999999875 9999999999999999886

>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 1700011n24rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=1.9e-20  Score=145.18  Aligned_cols=73  Identities=38%  Similarity=0.694  Sum_probs=69.0

Q ss_pred             CEEEE----EcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTV----TSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV----~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|||    +.++|.+|+|+|++++||.+||++|+.++|||+++|+|+|+|+.|.|+.+||++|||++|++|+|+.+
T Consensus         8 m~itV~~~~~~~~~~t~~l~V~~~~tV~~LK~~Ie~~~gip~~~Q~Li~~Gk~L~dd~~tL~~~gI~~g~~i~l~~r   84 (102)
T d1v5oa_           8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQK   84 (102)
T ss_dssp             EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBC
T ss_pred             EEEEEEecccCCCCCEEEEEECCcccHHHHHHHHHHHhCCCcceEEEEeCCeEeecccCCHHHcCCCCCCEEEEEEC
Confidence            89999    56779999999999999999999999999999999999999999977668999999999999999877

>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Dendritic cell-derived ubiquitin-like protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.2e-20  Score=136.87  Aligned_cols=72  Identities=14%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++|+.++++|++++||++||++|++++|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+
T Consensus         4 ~qi~Vk~~~G~~~~l~V~~~~tV~~lK~~I~~~~~ip~~~qrLi~~Gk~L~d~-~tL~~y~I~~~sti~lvi~   75 (80)
T d1ttna1           4 CQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDK-MKFEELKIPKDYVVQVIVS   75 (80)
T ss_dssp             EEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTT-SHHHHCCCSSSCEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCcccEEEEECceEcCCC-CcHHHcCCCCCCEEEEEec
Confidence            68999999999999999999999999999999999999999999999999875 8999999999999999875

>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Large proline-rich protein BAT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.2e-20  Score=136.08  Aligned_cols=71  Identities=25%  Similarity=0.489  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++++|+.++++|++++||++||++|++.+|+|+++|+|+|+|+.|.|+ +||++||| +|++|+|+.|
T Consensus         1 m~I~Vk~~~g~~~~l~V~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~d~-~tL~dy~i-~~~ti~lv~r   71 (73)
T d1wx9a1           1 LEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVER   71 (73)
T ss_dssp             EEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHCCCTTTCCCEETTEECCSS-SBHHHHTC-TTEEEBCCCS
T ss_pred             CEEEEEcCCCCEEEEEECCCChHHHHHHHHHHHhCCChHHEEEEECCeEccCC-CCHHHhCC-CCCEEEEEec
Confidence            89999999999999999999999999999999999999999999999999985 89999999 5899999875

>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like modifier protein hub1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=8.3e-20  Score=133.06  Aligned_cols=71  Identities=21%  Similarity=0.312  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|++..|+.++++|+|++||++||++|+.++|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|..
T Consensus         2 i~i~vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~Li~~Gk~L~d~-~tL~~y~I~~gstl~L~~   72 (73)
T d1m94a_           2 IEVVVNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDH-ISLEDYEVHDQTNLELYY   72 (73)
T ss_dssp             EEEEEEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEEESSSCEECTT-SBHHHHTCCTTEEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEEEEEeEEeccc-CcHHHcCCCCCCEEEEEE
Confidence            68999999999999999999999999999999999999999999999999876 899999999999999853

>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of Rad23 homolog A (Hhr23a)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.2e-20  Score=133.98  Aligned_cols=71  Identities=20%  Similarity=0.435  Sum_probs=67.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhC---CCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSG---ISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~g---ip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      |+|+|++++|+.++++|+|++||++||++|+++.|   +|+++|+|+|+|+.|.|+ +||++|||++|++|+++.
T Consensus         3 ~~i~vk~l~g~~~~l~v~~~~TV~~lK~~i~~~~g~~~i~~~~qrLi~~Gk~L~D~-~tL~~y~I~~~s~i~~~v   76 (77)
T d1oqya4           3 VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMV   76 (77)
T ss_dssp             CCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSS-SBTTTTCCCTTSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCChHHEEeEECCcCccCC-CcHHHcCCCCCCEEEEEE
Confidence            89999999999999999999999999999999987   999999999999999875 999999999999999875

>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Interferon-induced 15 kDa protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2.4e-19  Score=131.52  Aligned_cols=72  Identities=25%  Similarity=0.312  Sum_probs=68.7

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE--CCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF--QGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~--~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .+|+|++++|+.++++|++++||++||++|+.++|+|+++|+|+|  +|+.|.|+ .||++|||++|++|+|+.+
T Consensus         1 ~~l~Vk~l~G~~~~v~V~~~~tV~~lK~~I~~~~gip~~~QrLi~~~~Gk~L~D~-~tL~~y~i~~g~~i~lv~~   74 (76)
T d1z2ma1           1 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDR-VPLASQGLGPGSTVLLVVD   74 (76)
T ss_dssp             CEEEEEESSSCEEEEECCSSCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCSS-SCSGGGTCCTTCEEEEEEC
T ss_pred             CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhccCCccEEEEEcCCCeeccCC-CcHHHcCCCCCCEEEEEEE
Confidence            379999999999999999999999999999999999999999999  69999986 8999999999999999975

>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.9e-19  Score=130.06  Aligned_cols=71  Identities=24%  Similarity=0.435  Sum_probs=66.5

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|++. ++.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|+.+
T Consensus         2 i~I~Vk~~-~~~~~i~v~~~~tV~~lK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~I~~g~~i~lV~~   72 (73)
T d2bwfa1           2 LNIHIKSG-QDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKS   72 (73)
T ss_dssp             EEEEEEET-TEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEEC
T ss_pred             EEEEEEeC-CeEEEEEECCCChHHHHHHHHHHHHCcChHHeEEEECCeEccCC-CcHHHCCCCCCCEEEEEee
Confidence            78999985 55799999999999999999999999999999999999999876 8999999999999999875

>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.1e-19  Score=133.34  Aligned_cols=74  Identities=20%  Similarity=0.258  Sum_probs=68.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEeccC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQVA   76 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~p   76 (280)
                      |+|+|++.++ .++++|++++||++||++|++++|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|+.|+.|
T Consensus         8 i~I~Vkt~~~-~~~~~V~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~D~-~tL~~y~i~~gsti~lv~r~~~   81 (84)
T d1yqba1           8 IKVTVKTPKD-KEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIKRQH   81 (84)
T ss_dssp             EEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBHHHHTCCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCC-cEEEEECCCCcHHHHHHHHHHHHCcCchhEEEEEeeeecccc-CcHHHcCCCCCCEEEEEECCCC
Confidence            7899999765 589999999999999999999999999999999999999875 8999999999999999987433

>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3300001g02rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.6e-19  Score=137.86  Aligned_cols=73  Identities=22%  Similarity=0.360  Sum_probs=70.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceE---------------EEECCeeeCCCcCCccccCCCCC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIA---------------IEFQGNALVDNKKTLKDYNIQDG   65 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~---------------Li~~Gk~L~d~~~tL~~~gI~~g   65 (280)
                      |+|+|++++|+.++|+|+++.||++||++|+..++||+++|+               |+|+|+.|.|+..||++|||++|
T Consensus         8 M~v~Vk~~~G~~~~v~V~~~~TV~~LK~~I~~~~~ip~~~Qr~~~~~~~~~~~~~~~Li~~G~~L~d~~~tL~~~gI~~g   87 (105)
T d1v2ya_           8 MTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRNR   87 (105)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCSS
T ss_pred             EEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcCHHHhcccccccccccccceEEEECCEECcccCCCHHHcCCCCC
Confidence            899999999999999999999999999999999999999997               99999999887679999999999


Q ss_pred             CEEEEEEe
Q psy8018          66 DLVLLKRV   73 (280)
Q Consensus        66 d~l~l~~~   73 (280)
                      |+|+|+.+
T Consensus        88 ~~l~lv~r   95 (105)
T d1v2ya_          88 DEVSFIKK   95 (105)
T ss_dssp             EEEEEEEC
T ss_pred             CEEEEEEe
Confidence            99999886

>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like N-terminal domain of PLIC-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.8e-18  Score=131.41  Aligned_cols=71  Identities=27%  Similarity=0.299  Sum_probs=66.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+++++ .++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|+.|
T Consensus        33 i~V~Vk~~~~-~~~i~V~~~~tV~~LK~~I~~~~gi~~~~qrLi~~Gk~L~D~-~tL~~~~I~~g~~I~lvlr  103 (103)
T d1j8ca_          33 IKVTVKTPKE-KEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQHGIHDGLTVHLVIK  103 (103)
T ss_dssp             EEEEEECSSC-EEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTT-SCGGGTTCSSSEEEEEEEC
T ss_pred             EEEEEECCCc-cEEEEECCCChHHHHHHHHHHHHCcCHHHeeeeeeeecccCC-CcHHHcCCCCCCEEEEEEC
Confidence            6899999776 579999999999999999999999999999999999999875 8999999999999999864

>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 5, ubl5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=3e-18  Score=132.04  Aligned_cols=71  Identities=20%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      ++|+|++..|+.++++|+|++||.+||++|+..+|+|+++|+|+|+|++|.|+ .||++|||++|++|+|..
T Consensus        29 i~V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~dygI~~GstI~L~~   99 (100)
T d1uh6a_          29 IEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDH-VSLGDYEIHDGMNLELYY   99 (100)
T ss_dssp             EEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSS-CBHHHHTCCTTEEEEEEC
T ss_pred             EEEEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEEEEEeecccCc-CCHHHcCCCCCCEEEEEE
Confidence            37899999999999999999999999999999999999999999999999976 899999999999999864

>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.8e-18  Score=128.79  Aligned_cols=71  Identities=23%  Similarity=0.344  Sum_probs=66.3

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+++++ .++++|++++||.+||++|++.+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.|
T Consensus        11 i~v~Vk~~~~-~~~i~v~~~~tV~~lK~~I~~~~~v~~~~qrL~f~Gk~L~d~-~tL~~~gI~~gs~I~lv~r   81 (83)
T d1wx8a1          11 IRVSVKTPQD-CHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQRGILDGSTVHVVVR   81 (83)
T ss_dssp             EEEEEECSSS-EEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTT-SCHHHHTCCTTEEEECCBC
T ss_pred             EEEEEEcCCC-cEEEEECCCChHHHHHHHHHHHhCCChhHEEEEEEhhccccC-CcHHHcCCCCCCEEEEEEe
Confidence            7899999765 568999999999999999999999999999999999999975 8999999999999999875

>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=2.5e-17  Score=123.44  Aligned_cols=65  Identities=17%  Similarity=0.351  Sum_probs=62.5

Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           8 LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         8 ~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      ++|+.++++|++++||++||++|++++|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.|
T Consensus        19 L~G~~~~l~v~~~~tV~~lK~~I~~~~~ip~~~q~Li~~Gk~L~D~-~tL~dY~I~~gsti~l~~r   83 (86)
T d1zkha1          19 LNGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMANGAVIHLALK   83 (86)
T ss_dssp             CSSCEEEEEECTTSBHHHHHHHHHHHTCCCTTTEEEEETTEEECTT-SBHHHHTCCTTEEEEEEES
T ss_pred             cCCeEEEEEECCCChHHHHHHHHHhhhcCChHHEEEEeCCcCcCCC-CCHHHcCCCCCCEEEEEEe
Confidence            6799999999999999999999999999999999999999999975 8999999999999999875

>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein bab25500 (2010008E23Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.7e-17  Score=125.53  Aligned_cols=70  Identities=19%  Similarity=0.218  Sum_probs=65.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+||+++|+.+.++|++++||++||++|+   .+|+++|+|+|+|+.|.||.+||++|||++|++|||+.+
T Consensus         8 m~i~vK~l~~~~~~v~v~~~~TV~~lK~~i~---~~~~~~qrLi~~Gk~L~dd~~tL~~y~i~~g~~v~l~~~   77 (95)
T d1wiaa_           8 INVRLKFLNDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRS   77 (95)
T ss_dssp             EEEEEEETTTEEEEEEECSSSBHHHHHHHHS---SSTTTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECC
T ss_pred             EEEEEEcCCCCEEEEEECCcCcHHHHHHHHh---cCCcceeEEEECCEEcccCCCCHHHcCCCCCCEEEEEEc
Confidence            8999999999999999999999999999986   568899999999999987778999999999999999876

>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Bag-family molecular chaperone regulator-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3e-17  Score=121.68  Aligned_cols=72  Identities=29%  Similarity=0.359  Sum_probs=65.3

Q ss_pred             CEEEEEcCCCcEEEEEe-----CCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDV-----SEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV-----~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+. .++.++++|     ++++||++||++|+..+|+|+++|+|+|+|+.|.|+++||++|||++|++|+|+.+
T Consensus         2 i~i~V~~-~~~~~~i~v~~~~~~~~~Tv~~LK~~I~~~tgvp~~~QkL~~~G~~L~~d~~tL~~~gi~~g~~i~lv~~   78 (81)
T d1wxva1           2 LTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGK   78 (81)
T ss_dssp             EEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESC
T ss_pred             EEEEEEE-CCeeEEEEEecCCCCCccHHHHHHHHHHHHHCcCHHHEEeeecCeEeCcCCCChHHCCCCCCCEEEEEEe
Confidence            6788865 677888888     46899999999999999999999999999999987668999999999999999876

>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.8e-17  Score=126.71  Aligned_cols=71  Identities=20%  Similarity=0.214  Sum_probs=66.8

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+||..+++.++++|++++||.+||++|+..+|||+++|+|+|+|+.|.|+  ||++|||++|++|+|+.+
T Consensus         8 ~~I~VK~~~~~~~~v~v~~~~tV~~lK~~i~~~~gvp~~~QkLi~~Gk~L~d~--tL~~~gi~~g~~i~lv~t   78 (96)
T d1wgga_           8 YSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGNIKMKNGMTVLMMGS   78 (96)
T ss_dssp             EEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS--CCCSCCCCSSCEEECCCC
T ss_pred             eEEEEEeCCCCEEEEEECCCCcHHHHHHHhhhhcCccceeeEEeecCcccCCC--cHHHCCCCCCCEEEEEee
Confidence            58999998998889999999999999999999999999999999999999864  799999999999999864

>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 3, Ubl3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.65  E-value=1.9e-16  Score=124.96  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=66.0

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHH--------HHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCE--EEE
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFC--------EVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDL--VLL   70 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~I--------e~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~--l~l   70 (280)
                      |+|+|++++|+.++++|+|++||.+||++|        +++.|+|+++|||+|+||.|.|+ .||++|+|++|++  |||
T Consensus        17 i~i~v~~l~Gk~~~~~v~p~~TV~~lK~~I~~~~p~~~~e~~~~~~~~qRLiy~Gk~L~D~-~tL~~~~i~~g~~~~lhl   95 (116)
T d1wgha_          17 INLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMHL   95 (116)
T ss_dssp             EEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSS-CBTTTTTCCSSCEEEEEE
T ss_pred             EEEEEEEcCCCEEEEEECCcchHHHHHHHHHhhcccccccccCCChHHeEEEECCEEecCC-CCHHHcCCCCCCEEEEEE
Confidence            578899999999999999999999999999        56789999999999999999876 9999999999997  666


Q ss_pred             EEe
Q psy8018          71 KRV   73 (280)
Q Consensus        71 ~~~   73 (280)
                      +.|
T Consensus        96 v~r   98 (116)
T d1wgha_          96 VAR   98 (116)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            665

>d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Hypothetical protein At3g01050
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.65  E-value=3.9e-16  Score=119.99  Aligned_cols=72  Identities=14%  Similarity=0.168  Sum_probs=66.6

Q ss_pred             CEEEEEcCCCcEE-EEEeCCCccHHHHHHHHHHH-----hCCC--CcceEEEECCeeeCCCcCCccccCCCCCC------
Q psy8018           1 MKVTVTSLDNECF-LLDVSEDLELENFKAFCEVQ-----SGIS--AQEIAIEFQGNALVDNKKTLKDYNIQDGD------   66 (280)
Q Consensus         1 M~ItV~~~~g~~~-~leV~~~~tV~~LK~~Ie~e-----~gip--~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd------   66 (280)
                      |+|+|++++|+.+ ++.|++++||.+||++|+..     .|+|  +++|||+|+||+|.|+ +||++|+|..|+      
T Consensus         8 i~I~~r~~~G~~i~~~~v~~s~TV~~lK~~I~~~~~~~k~~iP~~~~~qRLIf~Gk~L~D~-~tL~dy~i~~g~~~~~~~   86 (101)
T d1se9a_           8 LEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENS-KTVKDYRSPVSNLAGAVT   86 (101)
T ss_dssp             EEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTT-SBGGGGSCCTTSCTTCCE
T ss_pred             EEEEEEeCCCCeecceecCccCHHHHHHHHHHHhccccccCCCCCcccEEEEECCeEecCC-CCHHHcCCCCCCcCCCce
Confidence            6899999999865 79999999999999999876     7898  7899999999999986 999999999998      


Q ss_pred             EEEEEEe
Q psy8018          67 LVLLKRV   73 (280)
Q Consensus        67 ~l~l~~~   73 (280)
                      ++||+.|
T Consensus        87 tmHlVvr   93 (101)
T d1se9a_          87 TMHVIIQ   93 (101)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999996

>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NEDD8 ultimate buster-1, NUB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.1e-16  Score=123.11  Aligned_cols=72  Identities=14%  Similarity=0.155  Sum_probs=65.8

Q ss_pred             CEEEE--EcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTV--TSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV--~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|++  +...|+.++++|++++||++||.+|+.+.|+|+++|+|+|+|++|.|+ +||++|||++|++|+++..
T Consensus        18 i~V~~~~~~~~g~~~~lev~~~~TV~~LK~~I~~~~gi~~~~qkLi~~Gk~L~d~-~tL~~~gI~~~s~i~vi~~   91 (100)
T d1wjua_          18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLG-KTLEEQGVAHNVKAMVLEL   91 (100)
T ss_dssp             EEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTT-SBHHHHTCCSSEEEEEECC
T ss_pred             EEEEEeeccCCCeEEEEEECCCcHHHHHHHHHHHHHCCCCeeEEEEEcccCcCCC-cCHHHcCCCCCCEEEEEEc
Confidence            35665  346799999999999999999999999999999999999999999986 9999999999999998865

>d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: 8430435i17rik protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.62  E-value=2.3e-16  Score=118.84  Aligned_cols=71  Identities=13%  Similarity=0.275  Sum_probs=65.1

Q ss_pred             CEEEEEcCCCcEEEE-EeCCCccHHHHHHHHHHHhCCCCcceEEE---ECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLL-DVSEDLELENFKAFCEVQSGISAQEIAIE---FQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~l-eV~~~~tV~~LK~~Ie~e~gip~~~Q~Li---~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+. .|+.+.+ +|++++||.+||++|++++|+|+++|+|+   |.|+.|.|+ .||++|||++|++|+|+.+
T Consensus         8 ~~i~Vk~-~~~~~~i~~v~~~~tV~~LK~~i~~~t~vp~~~QkLi~~~~~Gk~L~D~-~tL~~~~i~~g~~i~lv~s   82 (90)
T d1v5ta_           8 LPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-VKLGALKLKPNTKIMMMGT   82 (90)
T ss_dssp             CCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTT-SBHHHHTCCTTEEEEEECC
T ss_pred             EEEEEEE-CCeEEEEEEeCCCCcHHHHHHHHHHHHcCCHHHhhhhhhccCCcCCCCc-CcHHHcCCCCCCEEEEEee
Confidence            7899997 5566666 89999999999999999999999999999   589999986 8999999999999999876

>d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=9e-16  Score=116.46  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=63.9

Q ss_pred             CEEEEEcCCCc--EEEEEeCCCccHHHHHHHHHHHhC--CCCcceEEEECCeeeCCCcCCccccCCCCCC--EEEEEEe
Q psy8018           1 MKVTVTSLDNE--CFLLDVSEDLELENFKAFCEVQSG--ISAQEIAIEFQGNALVDNKKTLKDYNIQDGD--LVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~--~~~leV~~~~tV~~LK~~Ie~e~g--ip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd--~l~l~~~   73 (280)
                      |+|+|+++++.  .++++|++++||.+||++|+++.+  +|+++|||+|+||.|.|+ .||++|+.+.++  +|||+.+
T Consensus         8 i~l~Ik~~~~~~~~~~~~v~~~~TV~~LK~~I~~~~~~~~~~~~qrLIy~Gk~L~D~-~~L~d~~~~~~~~~viHLV~~   85 (93)
T d1wgda_           8 VTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH-QCLRDLLPKQEKRHVLHLVCN   85 (93)
T ss_dssp             CEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSS-SCHHHHSCSSSCSEEEEEECC
T ss_pred             EEEEEECCCCCceeEEEEcCCCCcHHHHHHHHHHHcCCCCChHHEEEEECCeEccCC-CCHHHhCcccCCCCEEEEEec
Confidence            78999998765  488999999999999999999964  999999999999999886 899999876554  9999876

>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: hypothetical D7wsu128e protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=3.4e-16  Score=119.24  Aligned_cols=70  Identities=13%  Similarity=0.240  Sum_probs=64.2

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |+|+|+. +++.|+++|+++.||.+||++|+..+|+|+++|+|+|+|+ |.|+ +||++|||++|++|+|+.+
T Consensus        18 i~v~V~~-~~k~~~i~v~~~~TV~~LK~~I~~~tgvp~~~q~Li~~g~-l~D~-~tL~~~~I~~gs~i~lvgs   87 (95)
T d1v86a_          18 VDLKIIW-NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL-VPED-KTLREIKVTSGAKIMVVGS   87 (95)
T ss_dssp             EEEEEEE-TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSB-CCSS-SBHHHHCCCTTEEEEECCS
T ss_pred             EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEeccc-ccCC-CcHHHCCCCCCCEEEEEec
Confidence            4566764 8899999999999999999999999999999999999997 8775 8999999999999999875

>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Splicing factor 3 subunit 1, C-terminal domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.60  E-value=5e-16  Score=121.62  Aligned_cols=65  Identities=20%  Similarity=0.260  Sum_probs=62.0

Q ss_pred             CCCcEEEEEeCC-CccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           8 LDNECFLLDVSE-DLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         8 ~~g~~~~leV~~-~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      .+|++++++|.| ++||.+||++|++++|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+.|
T Consensus        38 ~~G~~i~l~v~~~sdtV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~ynI~~gsti~L~lr  103 (111)
T d1we6a_          38 NDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN-MSLAHYNVGAGEILTLSLR  103 (111)
T ss_dssp             SSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTT-SBTTTTTCSSSCEEEEECS
T ss_pred             CCCeEEEEEecCCccHHHHHHHHHHHHHCCCccceEEEEeeEEcccc-CCHHHcCCCCCCEEEEEee
Confidence            369999999987 9999999999999999999999999999999986 8999999999999999986

>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Elongin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=9.7e-15  Score=112.63  Aligned_cols=71  Identities=18%  Similarity=0.089  Sum_probs=61.8

Q ss_pred             EEEEEcCC-CcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCC-------EEEEEEe
Q psy8018           2 KVTVTSLD-NECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGD-------LVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~-g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd-------~l~l~~~   73 (280)
                      +|||+... +.++.++|++++||.+||++|++.+|||+++|+|+|+|++|.|+ +||++|||.+++       ++++..+
T Consensus         1 qifv~i~~~k~Ti~l~v~~~~TV~~lK~~I~~~~gip~~~QrLi~~Gk~L~D~-~TL~dYgI~~~~~~~~~~~~~~l~~~   79 (103)
T d2c9wb1           1 DVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLAFR   79 (103)
T ss_dssp             CEEEEEEEBTEEEEEEECTTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBHHHHTCCTTTSBTTBCEEEEEEEE
T ss_pred             CEEEEEeCCCEEEEEEeCCCCcHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCcccccccCCcEEEEEEe
Confidence            47777654 45778999999999999999999999999999999999999876 999999996654       7777765

>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Tubulin-folding protein TbcE
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.9e-14  Score=108.73  Aligned_cols=76  Identities=11%  Similarity=0.323  Sum_probs=64.6

Q ss_pred             EEEEEc---CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCe-------eeCCCcCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTS---LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGN-------ALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~---~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk-------~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      .|+|++   .+++.+++.|++++||.+||.+|+..+|||+++|+|+|.|+       .|.++++||.+|||++|++|+|.
T Consensus        11 ti~i~~~~~~~~~~~~~kv~~~~TV~~LK~~i~~~~gip~~~qrL~y~~~~~~~~~~~l~~d~~tL~~YgI~dg~~I~V~   90 (97)
T d1wjna_          11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR   90 (97)
T ss_dssp             EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred             EEEEEeCCCCCCceEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEecCCCCCcccceecCCCcCHhhccCCCCCEEEEE
Confidence            345554   35788999999999999999999999999999999999887       36667799999999999999987


Q ss_pred             EeccCCC
Q psy8018          72 RVQVART   78 (280)
Q Consensus        72 ~~~~p~~   78 (280)
                      .. -|++
T Consensus        91 ~~-~P~~   96 (97)
T d1wjna_          91 WS-GPSS   96 (97)
T ss_dssp             CC-SSCC
T ss_pred             eC-CCCC
Confidence            63 4543

>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.1e-14  Score=109.18  Aligned_cols=74  Identities=23%  Similarity=0.273  Sum_probs=64.7

Q ss_pred             CEEEEEc-CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCee------eCCCcCCccccCCCCCCEEEEEEe
Q psy8018           1 MKVTVTS-LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNA------LVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         1 M~ItV~~-~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~------L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      |.|+|++ +++..+...+++++||.+||++|+..+|+|+++|+|+|.|+.      |.+|+++|++|||.+|++|||+.+
T Consensus         8 v~v~I~s~~~~~~~E~r~~~~~TV~~LK~kle~~tGip~~~qrL~~~~~~~~~~~~l~~d~~~L~~y~i~dg~~ihlvd~   87 (95)
T d1v6ea_           8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH   87 (95)
T ss_dssp             EEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred             EEEEEEECCCCcEEEEEeCCCCCHHHHHHHHHHHhCcCchhEEEEEeCCCCceeecccCCcCCHHHCCCCCCCEEEEEeC
Confidence            5788886 466677888999999999999999999999999999998873      544569999999999999999986


Q ss_pred             c
Q psy8018          74 Q   74 (280)
Q Consensus        74 ~   74 (280)
                      .
T Consensus        88 ~   88 (95)
T d1v6ea_          88 S   88 (95)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]

Probab=99.39  E-value=9.5e-13  Score=96.32  Aligned_cols=73  Identities=12%  Similarity=0.287  Sum_probs=65.5

Q ss_pred             EEEEEc-CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEecc
Q psy8018           2 KVTVTS-LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQV   75 (280)
Q Consensus         2 ~ItV~~-~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~~   75 (280)
                      +|+|+. .+|..+.+.|.++++++.||..++++.|+|+++|+|+|+|+.|.++ .|+++|||++||+|++..++.
T Consensus         4 ~I~ikv~~~~~~~~f~v~~~~~~~~l~~~~~~~~~i~~~~~~l~f~G~~l~~~-~T~~~~~i~dgd~I~v~~~q~   77 (79)
T d1euvb_           4 HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQI   77 (79)
T ss_dssp             EEEEEEESSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECCB
T ss_pred             EEEEEECCCCeEEEEEECCCCcHHHHHHHHHHHhCCChHhEEEEECCEEeCCC-CCHHHCCCCCCCEEEEEEecc
Confidence            456653 3677888999999999999999999999999999999999999876 899999999999999998754

>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-1 (smt3 homologue)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.6e-12  Score=94.66  Aligned_cols=73  Identities=21%  Similarity=0.361  Sum_probs=68.1

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEec
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRVQ   74 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~~   74 (280)
                      +.|+|++.+|+.+.+.|.++.+++.|++.++.+.|+|+++++|+|+|+.|.++ .|+++||+++||+|.+..+|
T Consensus         3 I~ikv~~~dg~~v~f~v~~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~l~~~-~T~~~l~~edgD~Idv~~~q   75 (77)
T d2uyzb1           3 IKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQEQ   75 (77)
T ss_dssp             EEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTEEEEEEECC
T ss_pred             EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEec
Confidence            35778889999999999999999999999999999999999999999999876 89999999999999998764

>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like domain of tubulin folding cofactor B
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.29  E-value=7.1e-12  Score=93.95  Aligned_cols=71  Identities=21%  Similarity=0.314  Sum_probs=59.8

Q ss_pred             EEEEc-CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCe------eeCCCcCCccccCCCCCCEEEEEEe
Q psy8018           3 VTVTS-LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGN------ALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         3 ItV~~-~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk------~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +.|++ ..+.....-+++++||.+||++|+..+|+|++.|+|+|.|+      .|.+++++|.+|||.+|.+|||+-+
T Consensus         7 l~it~~~t~~~~E~r~~~~~TV~~LK~kle~~~Gip~~~q~L~~~~~~~~~~~~l~dd~~~L~~ygi~dG~~Ihvvd~   84 (90)
T d1t0ya_           7 LEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDV   84 (90)
T ss_dssp             EEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEEC
T ss_pred             EEEEECCCccEEEEecCCCCCHHHHHHHHHHHHCCChhheEEEEeCCCCCcccccccCCCCHHHCCCCCCCEEEEEeC
Confidence            45554 33444566689999999999999999999999999999887      3666779999999999999999875

>d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: Ubiquitin-like protein 7
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=2.9e-12  Score=96.87  Aligned_cols=55  Identities=24%  Similarity=0.321  Sum_probs=49.0

Q ss_pred             CCCccHHHHHHHHHHHh--CCC-CcceEEEECCeeeCCCcCCccccCCCCCCEEEEEEe
Q psy8018          18 SEDLELENFKAFCEVQS--GIS-AQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus        18 ~~~~tV~~LK~~Ie~e~--gip-~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      ..+.||.+||++|+...  ++| +++|+|+|+||.|+|+ +||++|||++|++|||+.|
T Consensus        35 ~~~~tV~~lK~~i~~~~~~~~P~p~~~rLIy~Gk~L~D~-~tL~~y~I~~gstihLV~r   92 (94)
T d1x1ma1          35 LGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDD-QTLDFYGIQPGSTVHVLRK   92 (94)
T ss_dssp             CCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTT-CBHHHHTCCTTCEEEEEES
T ss_pred             CCccCHHHHHHHHHHHcccCCCChhheEEEECCeEECCC-ccHHHcCCCCCCEEEEEEe
Confidence            44789999999999885  455 6999999999999976 8999999999999999986

>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus [TaxId: 11665]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: EIAV protease
species: Equine infectious anemia virus [TaxId: 11665]

Probab=98.91  E-value=2.6e-09  Score=81.81  Aligned_cols=94  Identities=21%  Similarity=0.331  Sum_probs=64.1

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCcccccccee-eeeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWA-GIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~-g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl  227 (280)
                      +..+.++|||++++||+||||+.|+|+..-..+......   ... ...-|.|+. +.-+...+.+++.+......+.|.
T Consensus         8 RP~~~i~I~Gq~v~~LLDTGAD~TVI~~~~~p~~~~~~~---~~~~~~igg~g~~-~~~~~~~v~i~~~g~~~~~~~lV~   83 (104)
T d2fmba_           8 RPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGR---KYQGTGIGGVGGN-VETFSTPVTIKKKGRHIKTRMLVA   83 (104)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCC---CEECCCEEETTEE-ECCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CeEEEEEECCEEEEEEEeCCCCeEEEcccccCccCCCCC---CcceeEEEEecce-EEEEEEEEEEEECCeEEEEEEEEC
Confidence            456899999999999999999999999988776543211   111 112233332 222223457888887777777776


Q ss_pred             cCCCcccccchhhhhcceEEE
Q psy8018         228 EDQPMDMLLGLDMLKRHQVQI  248 (280)
Q Consensus       228 ~~~~~d~ILG~D~L~~~~~~I  248 (280)
                      + .+++ |+|-|.|.+.+|.+
T Consensus        84 p-~Pvn-LlGRdlL~qlG~~L  102 (104)
T d2fmba_          84 D-IPVT-ILGRDILQDLGAKL  102 (104)
T ss_dssp             S-CSSC-EECHHHHHHHTCCC
T ss_pred             C-CCcc-eecHHHHHHhCCEE
Confidence            5 3443 99999999988765

>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease {Feline immunodeficiency virus [TaxId: 11673]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Feline immunodeficiency virus (FIV) protease
species: Feline immunodeficiency virus [TaxId: 11673]

Probab=98.72  E-value=1.8e-08  Score=78.05  Aligned_cols=96  Identities=27%  Similarity=0.301  Sum_probs=68.3

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCe-----EEEeE
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIEND-----FLTTS  223 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~-----~~~~~  223 (280)
                      +..+.++|||+++++|+||||+.|||+..-....+   .. ........|+|+....-+...+.+++.+.     ++.-+
T Consensus        10 RP~v~v~I~Gq~v~~LLDTGAD~TVi~~~d~p~~~---~~-~~~~~~~~GIGG~~~v~~~~~v~i~~~~~~~~gtvl~g~   85 (113)
T d4fiva_          10 RPEILIFVNGYPIKFLLDTGADITILNRRDFQVKN---SI-ENGRQNMIGVGGGKRGTNYINVHLEIRDENYKTQCIFGN   85 (113)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEEGGGCCCTT---CE-EEEEEEEECSSCEEEEEEEEEEEEEECCTTSCCCEEEEE
T ss_pred             CCeEEEEECCEEEEEEEcCCCCcEEEeccccCCCC---CC-CCCCCeEEecCeEEeeeEEceEEEEEcCCeEeEEEEEcc
Confidence            44688999999999999999999999865422111   00 11223456999877677777778888753     44556


Q ss_pred             EEEecCCCcc-cccchhhhhcceEEE
Q psy8018         224 FSVLEDQPMD-MLLGLDMLKRHQVQI  248 (280)
Q Consensus       224 ~~Vl~~~~~d-~ILG~D~L~~~~~~I  248 (280)
                      +.|++..+.. =|+|-|.|.+.+|.+
T Consensus        86 ~pvlp~~~~p~nllGRd~LtqlG~~L  111 (113)
T d4fiva_          86 VCVLEDNSLIQPLLGRDNMIKFNIRL  111 (113)
T ss_dssp             EEEETTCCCSSCEECHHHHHHTTCCC
T ss_pred             ccccCCCCCcCCEEChhhhHHhCCEE
Confidence            7777755543 599999999988764

>d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: NPL4-like protein 1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.67  E-value=1.9e-08  Score=74.47  Aligned_cols=69  Identities=17%  Similarity=0.243  Sum_probs=57.8

Q ss_pred             EEEEcCCCcEEEEEeCC-CccHHHHHHHHHHHhCCCCcceEEEEC--------------CeeeCCCcCCccccCCCCCCE
Q psy8018           3 VTVTSLDNECFLLDVSE-DLELENFKAFCEVQSGISAQEIAIEFQ--------------GNALVDNKKTLKDYNIQDGDL   67 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~-~~tV~~LK~~Ie~e~gip~~~Q~Li~~--------------Gk~L~d~~~tL~~~gI~~gd~   67 (280)
                      |.|++-+| ..-++|+. +.||.+||.+|++..+||.++|.|..|              -..|.|+..+|+++||.+|++
T Consensus         3 iRiRsrdG-~eRv~v~~~~~Tl~~LK~~Ie~~L~VPv~~Q~LSl~~~llL~k~P~~~~~~~~l~d~~~~L~sl~i~hGsi   81 (94)
T d1wf9a1           3 LRVRSRDG-LERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSM   81 (94)
T ss_dssp             EEEECSSC-EEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCE
T ss_pred             EEEEecCC-ceEEEecCCCCcHHHHHHHHHHHhCCCcccceeecChhhhccCCccccchhhhccCCccCHHHcCccCceE
Confidence            55777677 56689964 789999999999999999999999654              334677778899999999999


Q ss_pred             EEEEE
Q psy8018          68 VLLKR   72 (280)
Q Consensus        68 l~l~~   72 (280)
                      |+|..
T Consensus        82 vyL~y   86 (94)
T d1wf9a1          82 VYLAY   86 (94)
T ss_dssp             EECCC
T ss_pred             EEEEe
Confidence            99865

>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ubiquitin-related
domain: SUMO-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=7.1e-08  Score=68.65  Aligned_cols=69  Identities=16%  Similarity=0.304  Sum_probs=63.4

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLK   71 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~   71 (280)
                      .|+|+..+|+.+.+.|.++.++..|......+.|+|+...+++|+|+.|..+ .|.+++|+++||+|.+-
T Consensus         3 ~lkv~~~~g~~v~f~vk~~t~l~kl~~~y~~~~~~~~~~~~f~fdG~~i~~~-~Tp~~l~med~D~Idv~   71 (72)
T d1wm3a_           3 NLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVF   71 (72)
T ss_dssp             EEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTT-CCTTTTTCCTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCccceEEEECCEEcCCC-CCHHHcCCCCCCEEEEE
Confidence            4666778899999999999999999999999999999999999999999765 89999999999999763

>d2nmza1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=98.54  E-value=3.3e-07  Score=68.20  Aligned_cols=91  Identities=16%  Similarity=0.330  Sum_probs=70.3

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceee-eeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAG-IAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g-~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl  227 (280)
                      +..+.++|.|+.+.||+||||..|++.     ...|+    .+|.. +.-|+|+--..-....++++|.+.....+..|-
T Consensus         8 RP~vtvkIgGq~~eaLLDTGADdTVle-----ei~lp----g~WkPk~IgGIGGfikVrqYd~i~iei~g~k~~gtVLVg   78 (99)
T d2nmza1           8 RPLVTIKIGGQLKEALLDTGADDTVIE-----EMSLP----GRWKPKMIGGIGGFIKVRQYDQIIIEIAGHKAIGTVLVG   78 (99)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEE-----SCCCC----SCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCeEEEEECCEEEEEeeccCCCceEEe-----cccCC----CCCCceEEEeccceEEEEEeCceEEEECCcEEEEEEEEC
Confidence            446899999999999999999999984     35554    33422 346888765566677889999998877777665


Q ss_pred             cCCCcccccchhhhhcceEEEEe
Q psy8018         228 EDQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       228 ~~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                      +  .+==|+|-+.|.+..|.++|
T Consensus        79 p--TPvNIiGRN~Ltq~GctLnf   99 (99)
T d2nmza1          79 P--TPANIIGRNLLTQIGATLNF   99 (99)
T ss_dssp             S--CSSCEECHHHHTTTTCEEEC
T ss_pred             C--CCccEEcccchhhcCceecC
Confidence            5  23358899999999999986

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=98.42  E-value=4.5e-07  Score=75.34  Aligned_cols=92  Identities=17%  Similarity=0.318  Sum_probs=72.9

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCcccccccee-eeeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWA-GIAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~-g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl  227 (280)
                      +..+.++|+|+++.||+||||..|++.     ..+|+-    ++. -+.-|+|+.-..-....++++|.+.....++.|.
T Consensus         8 RP~VtVkIgGQ~~eaLLDTGADDTVLe-----~inLpG----~WkPkiIGGIGGfIkVrqY~~V~IeI~gkk~~gTVLVg   78 (203)
T d1hvca_           8 RPLVTIRIGGQLKEALLDTGADDTVLE-----EMNLPG----KWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVG   78 (203)
T ss_dssp             CCEEEEESSSCEEEEEECTTCSSEEEE-----CCCCSS----CEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCeEEEEECCEEEEEEecCCCCceEEe-----cccCCC----CCcccEEEecCceEEEEEeCCEEEEECCcEEEEEEEEC
Confidence            456899999999999999999999984     355542    332 2345888866666778889999999888888887


Q ss_pred             cCCCcccccchhhhhcceEEEEec
Q psy8018         228 EDQPMDMLLGLDMLKRHQVQIAIE  251 (280)
Q Consensus       228 ~~~~~d~ILG~D~L~~~~~~ID~~  251 (280)
                      +  .+-=|||-|.|.+..|.++|.
T Consensus        79 P--TPvNIIGRNlLtqlG~tLnFp  100 (203)
T d1hvca_          79 P--TPVNIIGRNLLTQIGCTLNFG  100 (203)
T ss_dssp             S--CSSCEECHHHHGGGTCEEECT
T ss_pred             C--CCccccchhhhhhhhheeecc
Confidence            6  344589999999999999994

>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian retrovirus 1, SRV-1 [TaxId: 11942]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Mason-Pfizer monkey virus protease
species: Simian retrovirus 1, SRV-1 [TaxId: 11942]

Probab=98.38  E-value=1.4e-07  Score=72.20  Aligned_cols=94  Identities=15%  Similarity=0.157  Sum_probs=57.0

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeEEeEEEEE-EEEECC-eEEEeEEEE
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMV-QIAIEN-DFLTTSFSV  226 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~-~i~IG~-~~~~~~~~V  226 (280)
                      +..+.++|||+++.+|+||||++|+|+..-... +-+ ..  .......|+|+....-+.... ....+. ..-.+..+|
T Consensus         9 RP~~~v~I~G~~v~~LLDTGAD~TVI~~~~~p~-~wp-~~--~~~~~~~GiGg~~~~~~~~~~l~~~~~~~~~~~~~p~v   84 (107)
T d1nsoa_           9 KPSLTLWLDDKMFTGLINTGADVTIIKLEDWPP-NWP-IT--DTLTNLRGIGQSNNPKQSSKYLTWRDKENNSGLIKPFV   84 (107)
T ss_dssp             SSCEEEEETTEEEEECCCSSCSSCBCCGGGSCT-TSC-CC--CCEEEECSSSEEEECCCBCCCEEEEETTTEEEEECCBB
T ss_pred             CcEEEEEECCEEEEeeecCCCCcEEEeccccCC-CCC-cC--cCccEEEEecCeeeEEEeeeeEEEEeCCCceEEEcceE
Confidence            334789999999999999999999998754221 100 01  112345678764333222222 222333 222233346


Q ss_pred             ecCCCcccccchhhhhcceEE
Q psy8018         227 LEDQPMDMLLGLDMLKRHQVQ  247 (280)
Q Consensus       227 l~~~~~d~ILG~D~L~~~~~~  247 (280)
                      +++.+++ |+|-|.|.+.+|.
T Consensus        85 v~~~Pvn-llGRd~L~qlg~~  104 (107)
T d1nsoa_          85 IPNLPVN-LWGRDLLSQMKIM  104 (107)
T ss_dssp             CTTCCCC-BCCHHHHHHHHTS
T ss_pred             CCCCCcC-cccHHHHHHhCCE
Confidence            7766666 9999999987764

>d3ecga1 b.50.1.1 (A:1-99) Human immunodeficiency virus type 2 (HIV-2) protease {Human immunodeficiency virus type 2 [TaxId: 11709]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 2 (HIV-2) protease
species: Human immunodeficiency virus type 2 [TaxId: 11709]

Probab=98.36  E-value=1.7e-06  Score=64.17  Aligned_cols=91  Identities=16%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             EEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccceee-eeecCceeeEEeEEEEEEEEECCeEEEeEEEEe
Q psy8018         149 MLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAG-IAKGVGVQRIIGRIHMVQIAIENDFLTTSFSVL  227 (280)
Q Consensus       149 ~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g-~a~gvG~~~~~g~i~~~~i~IG~~~~~~~~~Vl  227 (280)
                      +..+.++|+|+.+.||+||||.-|++.     ...|+    .+|.- +.-|+|+--.+-....++|+|.+...-.+..|-
T Consensus         8 RP~vtvkIgGq~~eaLLDTGADdTVle-----~i~lp----g~WkPk~iGGIGGfikVrqYd~i~Ieicg~k~~gtVLvg   78 (99)
T d3ecga1           8 RPVVTAYIEGQPVEVLLDTGADDSIVA-----GIELG----NNYSPKIVGGIGGFINTKEYKNVEIEVLNKKVRATIMTG   78 (99)
T ss_dssp             CCEEEEEETTEEEEEEECTTCSSCEEC-----SCCCC----SCCEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCeEEEEECCEEeeeecccCCCceeee-----ccCCC----CCCcceEEEEeeeeEEEEEeCcEEEEECCcEEEEEEEeC
Confidence            456899999999999999999999983     35554    23422 345788765566677789999988766655553


Q ss_pred             cCCCcccccchhhhhcceEEEEe
Q psy8018         228 EDQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       228 ~~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                        ..+==|+|-+.|.+..|.+++
T Consensus        79 --pTPvNIiGRNlLtqlGctLn~   99 (99)
T d3ecga1          79 --DTPINIFGRNILTALGMSLNL   99 (99)
T ss_dssp             --CCSSCEECHHHHHHTTCEEEC
T ss_pred             --CCCceEEccchhhhhCcccCC
Confidence              234468999999999999874

>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Human immunodeficiency virus type 1 protease
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=97.72  E-value=0.00011  Score=60.79  Aligned_cols=96  Identities=16%  Similarity=0.273  Sum_probs=72.7

Q ss_pred             ceeeeEEEEEEEEcCEEEEEEEcCCCcceecCHHHHHHcCCcccccccee-eeeecCceeeEEeEEEEEEEEECCeEEEe
Q psy8018         144 FGSVIMLYINCRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRWA-GIAKGVGVQRIIGRIHMVQIAIENDFLTT  222 (280)
Q Consensus       144 ~~~~~~l~i~~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~-g~a~gvG~~~~~g~i~~~~i~IG~~~~~~  222 (280)
                      ...-.+..+.++|.|+...||+||||.-|++     +..+|+.    ||. -+.-|+|+--.+-....++|+|-++..-.
T Consensus       107 i~~wqrp~vt~ki~gq~~ealldtgaddtv~-----e~~~lpg----rwkpk~iggiggfikvrqy~~v~iei~g~k~~g  177 (203)
T d1hvca_         107 ITLWQRPLVTIKIGGQLKEALLDTGADDTVL-----EEMSLPG----RWKPKMIGGIGGFIKVRQYDQILIEICGHKAIG  177 (203)
T ss_dssp             ECSSSCCEEEEEETTEEEEEEECTTCSSCEE-----ESCCCSS----CCEEEEEEETTEEEEEEEEEEEEEEETTEEEEE
T ss_pred             eeecccceEEEecchhHHHHHhcccCCceEE-----ecccCCC----CCcceEEEEeccccceeeEccEEEEECCCEEEE
Confidence            3445677899999999999999999999997     3455553    342 23457887655667788899999887665


Q ss_pred             EEEEecCCCcccccchhhhhcceEEEEe
Q psy8018         223 SFSVLEDQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       223 ~~~Vl~~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                      +..|-+  ..-=|+|-+.|.+..|.++|
T Consensus       178 tvlvgp--tp~niigrn~ltq~g~tlnf  203 (203)
T d1hvca_         178 TVLVGP--TPVNIIGRNLLTQIGCTLNF  203 (203)
T ss_dssp             EEEEEC--CSSCEECHHHHTTTTCEEEC
T ss_pred             EEEECC--CCceEEcccchhhcCccccC
Confidence            555543  34468999999999999986

>d2al3a1 d.15.1.2 (A:10-85) Tether containing UBX domain for GLUT4 (Tug) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Tether containing UBX domain for GLUT4 (Tug)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.24  E-value=0.00085  Score=47.41  Aligned_cols=70  Identities=13%  Similarity=0.074  Sum_probs=64.6

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      .|+|-+++|...++-|.|++++.++-+..-.++|+.+++-.|.|++++|.- +-++.-.|+-+|..|.|+.
T Consensus         2 ~V~Vl~~~~rR~~VKvtP~t~l~~VL~eaC~k~~~~~~~~~Lkh~~k~ldL-sl~~R~sgLpnnakLELv~   71 (76)
T d2al3a1           2 AVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDL-SLQWRFANLPNNAKLEMVP   71 (76)
T ss_dssp             CEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESS-SCBHHHHCCCSSCEEEEEC
T ss_pred             cEEEECCCCcEEEEEeCCCcCHHHHHHHHHHHhCCChhHceeeeCCEEcCc-cceeeecCCCCCCEEEEEE
Confidence            377889999999999999999999999999999999999999999999964 5899999999999999875

>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Fas-associated factor 1, Faf1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00081  Score=47.86  Aligned_cols=71  Identities=15%  Similarity=0.220  Sum_probs=60.4

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV--DNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~--d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|-|+.++|..+.-...+++||.+|.+.|+.. +.++....|+  |-.+.+.  |.++||+++|+.+..+|+|..+
T Consensus         7 ~i~iRlPdG~~~~~~F~~~~tl~~v~~~v~~~-~~~~~~~~l~~~~Pr~~l~~~d~~~TL~e~gL~p~~~L~vq~~   81 (82)
T d1h8ca_           7 KLRIRTPSGEFLERRFLASNKLQIVFDFVASK-GFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK   81 (82)
T ss_dssp             EEEEECTTSCEEEEEECTTSBHHHHHHHHHHH-TCCSSSEEEEETTTTEETTTCCTTSBHHHHCCCSEEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCCCcHHHHHHHHHhc-CCCCCceEEEecCcccccccccccCCHHHCCCCCCCEEEEEeC
Confidence            47788999999999999999999999999875 7777788887  4677774  5568999999999999998653

>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: p47
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.05  E-value=0.0013  Score=47.55  Aligned_cols=68  Identities=13%  Similarity=0.293  Sum_probs=56.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHH-hCCCCcceEEEEC--CeeeCCCcCCccccCCCCCCEEEE
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQ-SGISAQEIAIEFQ--GNALVDNKKTLKDYNIQDGDLVLL   70 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e-~gip~~~Q~Li~~--Gk~L~d~~~tL~~~gI~~gd~l~l   70 (280)
                      +|-|+.++|..+.....++.+|++|.+.+... .+.+.....|+.+  -|.|.|.+.||+++|+.+ ..|.+
T Consensus        16 ~I~iRlPdG~~~~~~F~~~~tl~dv~~~v~~~~~~~~~~~f~L~t~~Prr~l~d~~~TL~e~gL~~-s~vl~   86 (89)
T d1i42a_          16 NIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLN-AVIVQ   86 (89)
T ss_dssp             EEEEEETTTCCEEEEECSSSCGGGHHHHHHHHCTTTSSCCEEEEETTTTEECCCCSSCSGGGTTCC-SEEEE
T ss_pred             EEEEEcCCCCEEEEEECCchhHHHHHHHHHHhCccCCCCCEEEecCCCCcccCCCcCcHHHCCCcC-ceEEE
Confidence            46788999999999999999999999999876 3667777888865  578888889999999985 55544

>d2pmaa1 b.50.1.3 (A:26-166) Uncharacterized protein LPG0085 {Legionella pneumophila [TaxId: 446]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: LPG0085-like
domain: Uncharacterized protein LPG0085
species: Legionella pneumophila [TaxId: 446]

Probab=96.90  E-value=0.00041  Score=54.83  Aligned_cols=43  Identities=16%  Similarity=0.236  Sum_probs=37.6

Q ss_pred             EEEECCeEEEeEEEEecCC--CcccccchhhhhcceEEEEecccE
Q psy8018         212 QIAIENDFLTTSFSVLEDQ--PMDMLLGLDMLKRHQVQIAIENDF  254 (280)
Q Consensus       212 ~i~IG~~~~~~~~~Vl~~~--~~d~ILG~D~L~~~~~~ID~~~~~  254 (280)
                      .+++|+..+++.|..-+-.  .+++|||-+||+..++.||..+..
T Consensus        94 ~i~ig~~~~~ie~tL~dR~~m~yp~LiGR~~L~~~~~~VD~s~~f  138 (141)
T d2pmaa1          94 NIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTF  138 (141)
T ss_dssp             EEEETTEEEEEEEEEECCCCCSCSEEECHHHHHHTTEEEETTCCC
T ss_pred             EEEECCEEEEEEEEECCCCCCCCCEEECHHHHhcCCEEECCchhe
Confidence            8999999999999988743  578999999999999999988653

>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma virus, strain pr-C [TaxId: 11886]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Retroviral protease (retropepsin)
domain: Rous sarcoma virus protease
species: Rous sarcoma virus, strain pr-C [TaxId: 11886]

Probab=96.71  E-value=8.9e-05  Score=57.58  Aligned_cols=90  Identities=17%  Similarity=0.093  Sum_probs=44.6

Q ss_pred             EEEcCEEEEEEEcCCCcceecCHHHHHHcCCccccccce--eeeeecCceeeEEeE---EEEEEEEECC--eEEE--eEE
Q psy8018         154 CRVNGHPVKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGIAKGVGVQRIIGR---IHMVQIAIEN--DFLT--TSF  224 (280)
Q Consensus       154 ~~InG~~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~a~gvG~~~~~g~---i~~~~i~IG~--~~~~--~~~  224 (280)
                      ++++|+.+.+|+||||..|||+..-     ++..-....  .....|+|+....-+   +....+....  ...+  +..
T Consensus        25 ~k~~g~~i~~LLDTGAD~TVI~~~d-----wp~~Wp~~~~~~~~i~GIGg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~p   99 (124)
T d2rspa_          25 VKQRSVYITALLDSGADITIISEED-----WPTDWPVMEAANPQIHGIGGGIPMRKSRDMIELGVINRDGSLERPLLLFP   99 (124)
T ss_dssp             CSCSEEEEEEEECTTCSSCEEETTT-----SCTTSCEEECC---------CCCEEEESSCEEEEEECTTSCBCCCEEECC
T ss_pred             EeeCCEEEEEEEcCCCCeEEEcCCc-----cCCCCccCCCCCCEEEEcCCceeeEEeeeeEEEeeEecCCceeeeEEEec
Confidence            5567788999999999999997643     221100000  012346775321111   2222233221  1122  222


Q ss_pred             EEecCCCcccccchhhhhcceEEEEe
Q psy8018         225 SVLEDQPMDMLLGLDMLKRHQVQIAI  250 (280)
Q Consensus       225 ~Vl~~~~~d~ILG~D~L~~~~~~ID~  250 (280)
                      .|.+  ...=|+|-|.|.+.+|.+.+
T Consensus       100 ~V~~--tPvni~GRdiL~qlG~tLt~  123 (124)
T d2rspa_         100 AVAM--VRGSILGRDCLQGLGLRLTN  123 (124)
T ss_dssp             EEES--CSSEEECHHHHHHTTCEEEC
T ss_pred             CCCC--CcccEECHhHHHHhCCEEeC
Confidence            3322  23359999999999998753

>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: Hypothetical protein KIAA0794
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0075  Score=46.07  Aligned_cols=71  Identities=14%  Similarity=0.226  Sum_probs=58.8

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEE--ECCeeeC--CCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIE--FQGNALV--DNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li--~~Gk~L~--d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|-|+.++|..+......+.||.+|.+.|+.. +.+.....|+  |--+.|.  |.++||+++|+-+..+|+|...
T Consensus        45 ~l~iRlPdG~r~~r~F~~~~tl~~l~~~v~~~-~~~~~~~~L~~~fPr~~l~~~d~~~TL~e~gL~P~~~L~vee~  119 (124)
T d1wj4a_          45 QLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQES  119 (124)
T ss_dssp             EEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEEC
T ss_pred             EEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc-ccCCcceEEeecccccccccccccCcHHHcCCCCCCEEEEEec
Confidence            47788999999999999999999999999876 4566677776  3456674  5668999999999999998763

>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: UBX domain
domain: UBX domain-containing protein 6 (Reproduction 8)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.011  Score=42.77  Aligned_cols=71  Identities=10%  Similarity=0.098  Sum_probs=57.5

Q ss_pred             EEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC--CeeeC-CCcCCccccCCCCCCEEEEEEe
Q psy8018           2 KVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ--GNALV-DNKKTLKDYNIQDGDLVLLKRV   73 (280)
Q Consensus         2 ~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~--Gk~L~-d~~~tL~~~gI~~gd~l~l~~~   73 (280)
                      +|-|+.++|..+.-...++.||.+|.+.++.. +.....-.|+.+  -+.+. |.++||+++|+.+..+|+|..+
T Consensus        18 ~i~iRlPdG~r~~r~F~~~dtl~~l~~fv~~~-~~~~~~f~l~~~~Pr~~~~~d~~~TL~e~gl~p~~~L~v~~~   91 (96)
T d2cr5a1          18 TVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEK   91 (96)
T ss_dssp             EEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEEC
T ss_pred             EEEEECCCCCEEEEEECCcccHHHHHHHHHHh-ccCcccceeecCCCceecCccCCCcHHHCCCCCCCEEEEecC
Confidence            46788999999999999999999999999775 445566777643  35664 5568999999999999998765

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.53  E-value=0.091  Score=36.77  Aligned_cols=66  Identities=15%  Similarity=0.188  Sum_probs=47.7

Q ss_pred             CEEEEEc-------CCCcEEEEEeCCCccHHHHHHHHHHHhCC-----------CCcceEEEECCeeeCCCcCCccccCC
Q psy8018           1 MKVTVTS-------LDNECFLLDVSEDLELENFKAFCEVQSGI-----------SAQEIAIEFQGNALVDNKKTLKDYNI   62 (280)
Q Consensus         1 M~ItV~~-------~~g~~~~leV~~~~tV~~LK~~Ie~e~gi-----------p~~~Q~Li~~Gk~L~d~~~tL~~~gI   62 (280)
                      |+|+|+.       .+.....+++++..||.+|.+.+....+-           ....-++..||+...++      +-+
T Consensus         2 mkI~v~~Fa~lre~~G~~~~~~~~~~~~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~iavN~~~~~~d------~~L   75 (88)
T d1vjka_           2 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSWD------EEL   75 (88)
T ss_dssp             EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCTT------CBC
T ss_pred             eEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHChHHHHHhhhccccccccEEEEEcceEcCCC------cCc
Confidence            8999983       23457789999999999999999876421           12334566788876543      348


Q ss_pred             CCCCEEEEEE
Q psy8018          63 QDGDLVLLKR   72 (280)
Q Consensus        63 ~~gd~l~l~~   72 (280)
                      ++||.|-+..
T Consensus        76 ~~gDevai~P   85 (88)
T d1vjka_          76 KDGDVVGVFP   85 (88)
T ss_dssp             CTTCEEEEES
T ss_pred             CCCCEEEEeC
Confidence            9999998753

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=93.87  E-value=0.078  Score=44.91  Aligned_cols=102  Identities=10%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             EEEcCE---EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCcee--eEEeEEEEEEEEECCeEEE-------
Q psy8018         154 CRVNGH---PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQ--RIIGRIHMVQIAIENDFLT-------  221 (280)
Q Consensus       154 ~~InG~---~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~--~~~g~i~~~~i~IG~~~~~-------  221 (280)
                      +.|++.   ...++||||.+.+.++.+.++++-=.  +....  .....+.-  ...-......+.+|+..+.       
T Consensus       198 i~v~~~~~~~~~aiiDSGTs~~~lp~~~~~~l~~~--i~~~~--~~~~~~~~~~~c~~~~p~itf~f~g~~~~i~~~~~~  273 (323)
T d1bxoa_         198 YTAGSQSGDGFSGIADTGTTLLLLDDSVVSQYYSQ--VSGAQ--QDSNAGGYVFDCSTNLPDFSVSISGYTATVPGSLIN  273 (323)
T ss_dssp             EEETTEEEEEEEEEECTTCSSEEECHHHHHHHHTT--STTCE--EETTTTEEEECTTCCCCCEEEEETTEEEEECHHHHE
T ss_pred             EEECCEecCCcceEEecccccccCCHHHHHHHHHH--hCCcc--ccCCCCcEEEeccCCCCcEEEEECCEEEEEChHHeE
Confidence            345555   46799999999999999999987210  00000  00000000  0000112234555554332       


Q ss_pred             ---------eEEEEecCCCcc-cccchhhhhcceEEEEecccEEEeee
Q psy8018         222 ---------TSFSVLEDQPMD-MLLGLDMLKRHQVQIAIENDFLTTSF  259 (280)
Q Consensus       222 ---------~~~~Vl~~~~~d-~ILG~D~L~~~~~~ID~~~~~L~i~~  259 (280)
                               |-+.+.+....+ .|||-.|||.+-.+.|+++++|-|..
T Consensus       274 ~~~~~~~~~C~~~i~~~~~~~~~ILG~~flr~~y~vfD~~~~~IGfAp  321 (323)
T d1bxoa_         274 YGPSGDGSTCLGGIQSNSGIGFSIFGDIFLKSQYVVFDSDGPQLGFAP  321 (323)
T ss_dssp             EEECSSSSCEEESEEECTTCSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCcEEECHHHhCCEEEEEECCCCEEeEEe
Confidence                     333333332334 58999999999999999999987754

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=92.93  E-value=0.12  Score=44.22  Aligned_cols=99  Identities=15%  Similarity=0.266  Sum_probs=58.1

Q ss_pred             EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE----EeEEEEEEEEECCeEEEeE------------
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI----IGRIHMVQIAIENDFLTTS------------  223 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~----~g~i~~~~i~IG~~~~~~~------------  223 (280)
                      ...|+||||++.+.+..++.+++-  ..+....   ....|.-..    ........+.+++..++++            
T Consensus       206 ~~~aiiDSGtt~~~lP~~~~~~l~--~~~~~~~---~~~~~~~~~~c~~~~~~P~i~f~f~g~~~~i~~~~yi~~~~~~~  280 (340)
T d1wkra_         206 STAGIVDTGTTLTLIASDAFAKYK--KATGAVA---DNNTGLLRLTTAQYANLQSLFFTIGGQTFELTANAQIWPRNLNT  280 (340)
T ss_dssp             EEEEEECTTBCSEEECHHHHHHHH--HHHTCEE---CTTTSSEEECHHHHHTCCCEEEEETTEEEEECTGGGBCCGGGGG
T ss_pred             CcceEEecCCccEeccHHHHHHHH--HHhCccc---cCCceEEEEeccccCCCCceEEEECCEEEEEChHHeEeeccCce
Confidence            346899999999999998777652  1111110   001111000    0011233556666543322            


Q ss_pred             ------------EEEec---CCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         224 ------------FSVLE---DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       224 ------------~~Vl~---~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                                  +..+.   ......|||..|||.+-.+.|+.++++-|...+.+
T Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~~  335 (340)
T d1wkra_         281 AIGGSASSVYLIVGDLGSDSGEGLDFINGLTFLERFYSVYDTTNKRLGLATTSFT  335 (340)
T ss_dssp             GGTCCSSCEEBCEEECSSCTTSSCCEEECHHHHTSEEEEEETTTTEEEEEECTTT
T ss_pred             eecCccceEEEEEecccCCCCCCCCEEechHHhCCEEEEEECCCCEEEEEECCCC
Confidence                        11111   11234699999999999999999999999876643

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=92.86  E-value=0.094  Score=44.44  Aligned_cols=96  Identities=11%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE--EeEEEEEEEEECCeEEE---------------e
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI--IGRIHMVQIAIENDFLT---------------T  222 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~--~g~i~~~~i~IG~~~~~---------------~  222 (280)
                      ...++||||.+.+.++.+..+.+--... ....   ....+....  .-......+.+|+..+.               |
T Consensus       208 ~~~~ivDSGts~~~lp~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~p~i~f~f~g~~~~ip~~~~~~~~~~~~~C  283 (323)
T d1izea_         208 SITGIADTGTTLLLLDDSIVDAYYEQVN-GASY---DSSQGGYVFPSSASLPDFSVTIGDYTATVPGEYISFADVGNGQT  283 (323)
T ss_dssp             CEEEEECTTCCSEEECHHHHHHHHTTST-TCEE---ETTTTEEEEETTCCCCCEEEEETTEEEEECHHHHEEEECSTTEE
T ss_pred             CceEEeccCCccccCCHHHHHHHHHHcC-Cccc---cCCCCcEEeecccCCceEEEEECCEEEEcChHHEEEEeCCCCEE
Confidence            5679999999999999998887621100 0000   000110000  00111234555654332               3


Q ss_pred             EEEEecCCCcc-cccchhhhhcceEEEEecccEEEeee
Q psy8018         223 SFSVLEDQPMD-MLLGLDMLKRHQVQIAIENDFLTTSF  259 (280)
Q Consensus       223 ~~~Vl~~~~~d-~ILG~D~L~~~~~~ID~~~~~L~i~~  259 (280)
                      -+.+....+.+ .|||..|||.+-.+.|+.+++|-|..
T Consensus       284 ~~~i~~~~~~~~~iLG~~flr~~y~vfD~~~~~IGfA~  321 (323)
T d1izea_         284 FGGIQSNSGIGFSIFGDVFLKSQYVVFDASGPRLGFAA  321 (323)
T ss_dssp             EESEEECTTTSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCCCEEECHHHhCCEEEEEECCCCEEEEcc
Confidence            22222222223 59999999999999999999987754

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=90.99  E-value=0.44  Score=39.81  Aligned_cols=99  Identities=10%  Similarity=0.107  Sum_probs=56.2

Q ss_pred             EEEEEEcCCCcceecCHHHHHHcCCccccccceeeeeecCceeeE--EeEEEEEEEEECCeEEE----------------
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARVNITRLIDTRWAGIAKGVGVQRI--IGRIHMVQIAIENDFLT----------------  221 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g~a~gvG~~~~--~g~i~~~~i~IG~~~~~----------------  221 (280)
                      +..++||||++.+.++.+.++++--.  +.....  ...-.....  ........+.+++..+.                
T Consensus       208 ~~~~~iDSGt~~~~lp~~~~~~l~~~--~~~~~~--~~~~~~~~~~~~~~~p~~~f~~~g~~~~i~p~~y~~~~~~~~~~  283 (329)
T d2bjua1         208 KANCIVDSGTSAITVPTDFLNKMLQN--LDVIKV--PFLPFYVTLCNNSKLPTFEFTSENGKYTLEPEYYLQHIEDVGPG  283 (329)
T ss_dssp             EEEEEECTTCCSEEECHHHHHHHTTT--SSCEEC--TTSSCEEEETTCTTCCCEEEECSSCEEEECHHHHEEECTTTSTT
T ss_pred             CCcccccccccceeCCHHHHHHHHHH--hCCeec--CCCCeeEeecccCCCCceeEEeCCEEEEECHHHhEEEeecCCCC
Confidence            56799999999999999999987211  111000  000000000  00011122333332211                


Q ss_pred             -eEEEEec--CCCcccccchhhhhcceEEEEecccEEEeeeeec
Q psy8018         222 -TSFSVLE--DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVL  262 (280)
Q Consensus       222 -~~~~Vl~--~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~  262 (280)
                       |-+.+..  ...-..|||..||+.+-.+.|+++++|-|...+.
T Consensus       284 ~C~~~i~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iGfA~a~~  327 (329)
T d2bjua1         284 LCMLNIIGLDFPVPTFILGDPFMRKYFTVFDYDNHSVGIALAKK  327 (329)
T ss_dssp             EEEECEEECCCSSCEEEECHHHHHHEEEEEETTTTEEEEEEECS
T ss_pred             EEEEEEEECCCCCCCEEEchHhhCcEEEEEECCCCEEEEEEecc
Confidence             3233322  2222368999999999999999999999987654

>d3cmsa_ b.50.1.2 (A:) Chymosin (synonym: renin) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.14  E-value=0.31  Score=40.66  Aligned_cols=96  Identities=10%  Similarity=0.115  Sum_probs=53.7

Q ss_pred             EEEEEcCCCcceecCHHHHHHcCCccccccce--eeeeecCceeeEEeEEEEEEEEECCeEEE-------------eEEE
Q psy8018         161 VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGIAKGVGVQRIIGRIHMVQIAIENDFLT-------------TSFS  225 (280)
Q Consensus       161 v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-------------~~~~  225 (280)
                      ..++||||...+.++.+.++++--.  +....  .+...-....  ........+.+|+..+.             |-+.
T Consensus       211 ~~~iiDSGtt~~~lp~~~~~~l~~~--~~~~~~~~~~~~~~~~~--~~~~p~i~f~f~g~~~~l~~~~y~~~~~~~c~~~  286 (323)
T d3cmsa_         211 CQAILDTGTSKLVGPSSDILNIQQA--IGATQNQYGEFDIDCDN--LSYMPTVVFEINGKMYPLTPSAYTSQDQGFCTSG  286 (323)
T ss_dssp             EEEEECTTCCSEEECHHHHHHHHHH--HTCEEETTTEEEECTTC--TTTSCCEEEEETTEEEEECHHHHEEEETTEEEES
T ss_pred             eeEEEecCcceEEecHHHHHHHHHH--hCceeccCCceeEeccc--cCCCCeEEEEECCEEEEECHHHeEEcCCCEEEEE
Confidence            4699999999999999998876110  10000  0000000000  00011223444544322             2223


Q ss_pred             EecCCCc-ccccchhhhhcceEEEEecccEEEeeee
Q psy8018         226 VLEDQPM-DMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       226 Vl~~~~~-d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      +...... ..|||..||+.+-...|+++++|-|...
T Consensus       287 i~~~~~~~~~iLG~~~l~~~yvvfD~~~~~igfa~a  322 (323)
T d3cmsa_         287 FQSENHSQKWILGDVFIREYYSVFDRANNLVGLAKA  322 (323)
T ss_dssp             EEEC---CCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCCCEEEcHHhhCcEEEEEECCCCEEEEEEe
Confidence            3222222 3799999999999999999999998754

>d1wkra_ b.50.1.2 (A:) Acid protease {Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Irpex lacteus (Polyporus tulipiferae), Polyporopepsin [TaxId: 5319]

Probab=89.29  E-value=0.79  Score=38.80  Aligned_cols=87  Identities=15%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             EEEEEEEc--CEEEEEEEcCCCcceecC-HHHHHHcCCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-eEEE
Q psy8018         150 LYINCRVN--GHPVKAFIDSGAQTTIMS-AACAARVNITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-TSFS  225 (280)
Q Consensus       150 l~i~~~In--G~~v~alVDTGAq~tiis-~~~A~rlgL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-~~~~  225 (280)
                      .++++.|+  .+++++++|||++.+.+. ..|-.+..--......+ .+.+|-|.  ..|.+....+.+++...+ ..|.
T Consensus        14 Y~~~i~iGtP~Q~~~~i~DTGSs~~wv~~~~c~~~sst~~~~~~~~-~i~Y~~gs--~~G~~~~D~~~~~~~~~~~~~fg   90 (340)
T d1wkra_          14 YVVNVGVGSPATTYSLLVDTGSSNTWLGADKSYVKTSTSSATSDKV-SVTYGSGS--FSGTEYTDTVTLGSLTIPKQSIG   90 (340)
T ss_dssp             EEEEEEETTTTEEEEEEEETTCCCCEECSSSCCCCCTTCEEEEEEE-EEECSSCE--EEEEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEcCCCeEEEEEEECCCcceEEcCCCCCCCCCCcCCCCCeE-EEEeCCeE--EEEEEEEEEEeeCCeeeccEEEE
Confidence            67899997  489999999999988773 32211100000111111 23445553  468888889999986544 3344


Q ss_pred             Eec----CCCcccccchh
Q psy8018         226 VLE----DQPMDMLLGLD  239 (280)
Q Consensus       226 Vl~----~~~~d~ILG~D  239 (280)
                      +..    ....|.++|+-
T Consensus        91 ~~~~~~~~~~~~gi~g~g  108 (340)
T d1wkra_          91 VASRDSGFDGVDGILGVG  108 (340)
T ss_dssp             EEEEEESCTTCSEEEECS
T ss_pred             EEEeccCcccccceeccc
Confidence            433    23567788764

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.25  E-value=1  Score=37.75  Aligned_cols=91  Identities=21%  Similarity=0.359  Sum_probs=57.2

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceec-CHHHHH---HcCCccccccc------eee----eeecCceeeEEeEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIM-SAACAA---RVNITRLIDTR------WAG----IAKGVGVQRIIGRIHMV  211 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A~---rlgL~~~~d~r------~~g----~a~gvG~~~~~g~i~~~  211 (280)
                      ...++++.|+  ++++.++||||++.+.+ +..|..   .|+.....+..      ..+    ...|-|  ...|.+...
T Consensus        15 ~~Y~~~i~iGtP~Q~~~l~~DTGSs~~Wv~~~~C~~~~~~c~~~~~f~~~~SsT~~~~~~~~~~~Y~~g--s~~G~~~~D   92 (335)
T d1smra_          15 SQYYGEIGIGTPPQTFKVIFDTGSANLWVPSTKCSRLYLACGIHSLYESSDSSSYMENGDDFTIHYGSG--RVKGFLSQD   92 (335)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCGGGGGSCCBCGGGCTTCEEEEEEEEEEETTE--EEEEEEEEE
T ss_pred             CEEEEEEEECCCCeEEEEEEECCcccEEEEcCCCCCccccccCCCcCCCccCcccccCCCcEEEEecCc--eEEEEEEEE
Confidence            4788999997  89999999999999876 333322   23322222211      111    234444  357888888


Q ss_pred             EEEECCeEEEeEEEEec--------CCCcccccchhh
Q psy8018         212 QIAIENDFLTTSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       212 ~i~IG~~~~~~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      .+.+|+....-.+....        ....++++|+.+
T Consensus        93 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~glg~  129 (335)
T d1smra_          93 SVTVGGITVTQTFGEVTQLPLIPFMLAQFDGVLGMGF  129 (335)
T ss_dssp             EEEETTEEEEEEEEEEEECCHHHHTTCSSSEEEECSC
T ss_pred             EEEecccccccEEEEEEeccccccccccccccccccc
Confidence            99999976654433322        335688898853

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=88.61  E-value=0.35  Score=41.66  Aligned_cols=102  Identities=10%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             EEEEEcCE---EEEEEEcCCCcceecCHHHHHHc----CCccccc-cceeeeeecCceeeEEeEEEEEEEEECCeEEE--
Q psy8018         152 INCRVNGH---PVKAFIDSGAQTTIMSAACAARV----NITRLID-TRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT--  221 (280)
Q Consensus       152 i~~~InG~---~v~alVDTGAq~tiis~~~A~rl----gL~~~~d-~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~--  221 (280)
                      +.+.+++.   ...++||||.+.+.++.+.++++    +...... ..+ ......      .......+.+|+..++  
T Consensus       243 l~~~~~~~~~~~~~~iiDTGTs~~~lP~~~~~~l~~~i~~~~~~~~~~~-~~~~~~------~~~P~itf~f~g~~~~l~  315 (373)
T d1miqa_         243 LDVHFGKQTMEKANVIVDSGTTTITAPSEFLNKFFANLNVIKVPFLPFY-VTTCDN------KEMPTLEFKSANNTYTLE  315 (373)
T ss_dssp             EEEEETTEEEEEEEEEECTTBSSEEECHHHHHHHHHHHTCEECTTSSCE-EEETTC------TTCCCEEEECSSCEEEEC
T ss_pred             EEEEECcEecCCcceEeccCCceeccCHHHHHHHHHHhCCeeccCCCee-Eecccc------CCCceEEEEECCEEEEEC
Confidence            34455554   46799999999999999877765    2111100 000 000000      0011223334443222  


Q ss_pred             ---------------eEEEEec--CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ---------------TSFSVLE--DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ---------------~~~~Vl~--~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                                     |-+.+.+  ...-..|||..||+.+-.+.|+.+++|-|...
T Consensus       316 p~~y~~~~~~~~~~~C~~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~rIGfA~a  371 (373)
T d1miqa_         316 PEYYMNPILEVDDTLCMITMLPVDIDSNTFILGDPFMRKYFTVFDYDKESVGFAIA  371 (373)
T ss_dssp             GGGSEEESSSSSCSEEEESEEECCSSSSEEEECHHHHHHEEEEEETTTTEEEEEEE
T ss_pred             HHHeeEEEEeCCCCEEEEEEEECCCCCCCEEEcHHhhCcEEEEEECCCCEEEEEEc
Confidence                           3222222  11223699999999999999999999887653

>d1mppa_ b.50.1.2 (A:) Pepsin {Mucor pusillus [TaxId: 4840]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin
species: Mucor pusillus [TaxId: 4840]

Probab=87.87  E-value=0.59  Score=39.90  Aligned_cols=41  Identities=15%  Similarity=0.070  Sum_probs=31.2

Q ss_pred             eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeec
Q psy8018         222 TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVL  262 (280)
Q Consensus       222 ~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~  262 (280)
                      |-+.+.+...-..|||..|||.+-.+.|++++++-|...+-
T Consensus       312 c~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~~~~  352 (357)
T d1mppa_         312 CMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLAS  352 (357)
T ss_dssp             EEESEEEESSSCCEEEHHHHTTEEEEEETTTTEEEEEEBCT
T ss_pred             EEEEEcCCCCCCEEechHHhCCEEEEEECCCCEEEEEECCc
Confidence            44444444344579999999999999999999998876543

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=87.85  E-value=0.52  Score=39.79  Aligned_cols=100  Identities=13%  Similarity=0.075  Sum_probs=56.9

Q ss_pred             EEEEcCEE----EEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE---
Q psy8018         153 NCRVNGHP----VKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT---  221 (280)
Q Consensus       153 ~~~InG~~----v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~---  221 (280)
                      .+.|+|..    ..++||||.+.+.++.+..+++    +-....+..+   .......    ......+.+|+..+.   
T Consensus       201 ~i~i~~~~~~~~~~~iiDSGt~~~~lp~~~~~~l~~~~~~~~~~~~~~---~~~C~~~----~~p~i~f~f~g~~~~i~~  273 (325)
T d2apra_         201 RATVGTSTVASSFDGILDTGTTLLILPNNIAASVARAYGASDNGDGTY---TISCDTS----AFKPLVFSINGASFQVSP  273 (325)
T ss_dssp             EEEETTEEEECCEEEEECTTCSSEEEEHHHHHHHHHHHTCEECSSSCE---EECSCGG----GCCCEEEEETTEEEEECG
T ss_pred             eEEECCEeecceeeeeccCCCccccCCHHHHHHHHHHhCCcccCCCce---eecccCC----CCCcEEEEECCEEEEECh
Confidence            34566664    4699999999999999877765    2211111111   0000000    001123334443322   


Q ss_pred             -----------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeee
Q psy8018         222 -----------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSF  259 (280)
Q Consensus       222 -----------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~  259 (280)
                                 |-+.+-....--.|||..|||.+-.+.|+.+++|-|..
T Consensus       274 ~~y~~~~~~~~C~~~i~~~~~~~~iLG~~flr~~y~vfD~~~~~IGfAp  322 (325)
T d2apra_         274 DSLVFEEFQGQCIAGFGYGNWGFAIIGDTFLKNNYVVFNQGVPEVQIAP  322 (325)
T ss_dssp             GGGEEEEETTEEEESEEEESSSSEEECHHHHTTEEEEEETTTTEEEEEE
T ss_pred             HHeEEecCCCEEEEEEccCCCCCEEECHHHhCcEEEEEECCCCEEeEEE
Confidence                       22222222222369999999999999999999988754

>d1y8xb1 c.111.1.2 (B:349-440) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.56  E-value=0.29  Score=35.12  Aligned_cols=63  Identities=14%  Similarity=0.239  Sum_probs=42.6

Q ss_pred             EEEeCCCccHHHHHHHHHHHhCCCCc----------ceEEEECCee--eC-----CCcCCccccCCCCCCEEEEEEeccC
Q psy8018          14 LLDVSEDLELENFKAFCEVQSGISAQ----------EIAIEFQGNA--LV-----DNKKTLKDYNIQDGDLVLLKRVQVA   76 (280)
Q Consensus        14 ~leV~~~~tV~~LK~~Ie~e~gip~~----------~Q~Li~~Gk~--L~-----d~~~tL~~~gI~~gd~l~l~~~~~p   76 (280)
                      +++|++++|+++|-..+.+...+-..          .++=+|--.+  |+     +-+++|++.|+.+|+.|+|.-...|
T Consensus         4 ~l~~~~~~TL~~li~~L~e~p~~qlk~Psltt~~~g~~ktLYm~~pp~Lee~Tr~NL~k~L~eLgl~dG~ei~VtD~t~p   83 (92)
T d1y8xb1           4 NIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVADVTTP   83 (92)
T ss_dssp             CEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEECTTCS
T ss_pred             eEEcCCCCcHHHHHHHHhhChHhhccCCceeeecCCCccEEEecCcHHHHHHhhhccccCHHHhCCcCCCEEEEecCCCc
Confidence            58899999999999998886333211          1333333323  32     2247899999999999999764333

>d1eaga_ b.50.1.2 (A:) Acid protease {Yeast (Candida albicans) [TaxId: 5476]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida albicans) [TaxId: 5476]

Probab=87.17  E-value=4.3  Score=33.84  Aligned_cols=30  Identities=10%  Similarity=0.227  Sum_probs=26.4

Q ss_pred             cccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         234 MLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       234 ~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                      .|||..||+.+-.+.|+++++|-|...+..
T Consensus       304 ~ILG~~fl~~~y~vfD~~~~~iGfA~a~~~  333 (342)
T d1eaga_         304 NILGDNFLRSAYIVYDLDDNEISLAQVKYT  333 (342)
T ss_dssp             CEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred             cEECHHhhCcEEEEEECCCCEEEEEECCCC
Confidence            489999999999999999999999876543

>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus chinensis) [TaxId: 4843]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Bread mold (Rhizopus chinensis) [TaxId: 4843]

Probab=87.15  E-value=1.2  Score=37.34  Aligned_cols=91  Identities=16%  Similarity=0.285  Sum_probs=55.6

Q ss_pred             EEEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCCc-cccccc----e--e----eeeecCceeeEEeEEEEEEEEE
Q psy8018         149 MLYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNIT-RLIDTR----W--A----GIAKGVGVQRIIGRIHMVQIAI  215 (280)
Q Consensus       149 ~l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL~-~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i~I  215 (280)
                      ..++++.|+  ++++.++||||+..+-+..+-+..|+-. ...+..    +  .    .+.++-| ....|.+....+.+
T Consensus        16 ~Y~~~i~iGtP~Q~~~v~vDTGS~~~Wv~~~~C~~c~~~~~~y~~~~SsT~~~~~~~~~~~y~~g-~~~~G~~~~D~~~~   94 (325)
T d2apra_          16 EYYGQVTIGTPGKKFNLDFDTGSSDLWIASTLCTNCGSGQTKYDPNQSSTYQADGRTWSISYGDG-SSASGILAKDNVNL   94 (325)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCSSCCTTSCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCEEEEEEEECCCCcEEEeCCCCCccccCCCccCcccCCceeECCeEEEEEeCCC-CeEEEEEEeeeEEe
Confidence            468999994  6899999999999998843322344322 111110    0  1    1233444 35678888889999


Q ss_pred             CCeEEEe-EEEEec-------CCCcccccchhh
Q psy8018         216 ENDFLTT-SFSVLE-------DQPMDMLLGLDM  240 (280)
Q Consensus       216 G~~~~~~-~~~Vl~-------~~~~d~ILG~D~  240 (280)
                      |+...+- .+....       ....|++||+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~GilGlg~  127 (325)
T d2apra_          95 GGLLIKGQTIELAKREAASFASGPNDGLLGLGF  127 (325)
T ss_dssp             TTEEEEEEEEEEEEEECHHHHTSSCSEEEECSC
T ss_pred             eeeeccCcceeeeeeecccccccccCccccccc
Confidence            9876542 222222       235789999754

>d1dpja_ b.50.1.2 (A:) Acid protease {Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Baker's yeast (Saccharomyces cerevisiae), proteinase A [TaxId: 4932]

Probab=86.88  E-value=0.98  Score=37.71  Aligned_cols=102  Identities=12%  Similarity=0.104  Sum_probs=56.4

Q ss_pred             EEEcCEE-----EEEEEcCCCcceecCHHHHHHcCCccccccce--eee-eecCceeeEEeEEEEEEEEECCeEEE----
Q psy8018         154 CRVNGHP-----VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGI-AKGVGVQRIIGRIHMVQIAIENDFLT----  221 (280)
Q Consensus       154 ~~InG~~-----v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~-a~gvG~~~~~g~i~~~~i~IG~~~~~----  221 (280)
                      +.|+|..     ..++||||.+.+.+..++.+++.-.  +....  .+. ...-..   ........+.+|+..+.    
T Consensus       201 i~v~~~~~~~~~~~~iiDSGts~~~lp~~~~~~l~~~--~~~~~~~~~~~~~~c~~---~~~~P~i~f~f~g~~~~l~p~  275 (329)
T d1dpja_         201 IGLGDEYAELESHGAAIDTGTSLITLPSGLAEMINAE--IGAKKGWTGQYTLDCNT---RDNLPDLIFNFNGYNFTIGPY  275 (329)
T ss_dssp             EEETTEEEECSSCEEEECTTCSCEEECHHHHHHHHHH--HTCEECTTSSEEECGGG---GGGCCCEEEEETTEEEEECTT
T ss_pred             EEECCeEeeeeecccccCcccceeeCCHHHHHHHHHH--hCCccccceeEEEeccc---cCccceEEEEECCEEEEECHH
Confidence            3566664     3489999999999999988876211  10000  000 000000   00011123444443222    


Q ss_pred             ---------eEEEE--ecC--C-CcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         222 ---------TSFSV--LED--Q-PMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       222 ---------~~~~V--l~~--~-~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                               |-+.+  ++.  . .--.|||..||+.+-.+.|+++++|-|...
T Consensus       276 ~y~~~~~~~c~~~~~~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~igfA~a  328 (329)
T d1dpja_         276 DYTLEVSGSCISAITPMDFPEPVGPLAIVGDAFLRKYYSIYDLGNNAVGLAKA  328 (329)
T ss_dssp             TSEEEETTEEEECEEECCCCTTTCSEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             HeEEecCCcEEEEEEECccCCCCCCcEEEcHHhhCcEEEEEECCCCEEEEEEe
Confidence                     22222  221  1 122689999999999999999999988653

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=86.45  E-value=1.1  Score=29.42  Aligned_cols=56  Identities=13%  Similarity=0.211  Sum_probs=44.5

Q ss_pred             CCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           9 DNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         9 ~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      +|+.  .++++..|+.+|-+.    .++++..-.+-.||+.+.-  ..-.+.-+++||.|.+..
T Consensus         5 Ng~~--~~~~~~~tl~~ll~~----l~~~~~~vaV~vN~~ivpk--~~~~~~~L~~gD~ieIv~   60 (65)
T d1zud21           5 NDQA--MQCAAGQTVHELLEQ----LDQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQ   60 (65)
T ss_dssp             TTEE--ECCCTTCBHHHHHHH----HTCCCTTEEEEETTEECCG--GGTTTCBCCTTCEEEEEE
T ss_pred             CCEE--EEcCCCCcHHHHHHH----cCCCCCcEEEEECCEEcCH--HHHhhccCCCCCEEEEEE
Confidence            5554  466788999988764    5788888888999999963  466778899999999876

>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis) [TaxId: 5482]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=85.79  E-value=2.7  Score=35.39  Aligned_cols=103  Identities=16%  Similarity=0.258  Sum_probs=57.7

Q ss_pred             EEEcCEEE----EEEEcCCCcceecCHHHHHHcCCcccccccee--eeeecCceeeEEeEEEEEEEEEC-CeEEE-----
Q psy8018         154 CRVNGHPV----KAFIDSGAQTTIMSAACAARVNITRLIDTRWA--GIAKGVGVQRIIGRIHMVQIAIE-NDFLT-----  221 (280)
Q Consensus       154 ~~InG~~v----~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~--g~a~gvG~~~~~g~i~~~~i~IG-~~~~~-----  221 (280)
                      +.|||..+    .|+||||...+.++.+..+++-  ..+...+.  +....+-...   ......+.++ +..+.     
T Consensus       202 i~v~g~~~~~~~~aiiDSGt~~~~lp~~~~~~l~--~~~~~~~~~~~~~~~~~~~~---~~p~i~f~f~~g~~~~i~~~~  276 (334)
T d1j71a_         202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKFA--RIVGATWDSRNEIYRLPSCD---LSGDAVFNFDQGVKITVPLSE  276 (334)
T ss_dssp             EEETTEEEEEEEEEEECTTCSSEEECHHHHHHHH--HHHTCEEETTTTEEECSSSC---CCSEEEEEESTTCEEEEEGGG
T ss_pred             EEECCEEecccccccccCCCcceeccHHHHHHHH--HHhCCEEcCCCCeeeccccc---cCCCceEEeCCCEEEEEChHH
Confidence            45677754    4999999999999999888761  11111100  0000000000   0011123332 22211     


Q ss_pred             ----------eEEEEecCCCcccccchhhhhcceEEEEecccEEEeeeeecC
Q psy8018         222 ----------TSFSVLEDQPMDMLLGLDMLKRHQVQIAIENDFLTTSFSVLE  263 (280)
Q Consensus       222 ----------~~~~Vl~~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~~  263 (280)
                                |-+.+...  -..|||..||+.+-.+.|+.++++-|......
T Consensus       277 y~~~~~~~~~C~~~i~~~--~~~ILG~~fl~~~y~vfD~~n~~iGfA~~~~~  326 (334)
T d1j71a_         277 LILKDSDSSICYFGISRN--DANILGDNFLRRAYIVYDLDDKTISLAQVKYT  326 (334)
T ss_dssp             GEEECSSSSCEEESEEEC--TTCEECHHHHTTEEEEEETTTTEEEEEEECCC
T ss_pred             eEEecCCCCEEEEEecCC--CCcEECHHhhCcEEEEEECCCCEEEEEECCCC
Confidence                      22222221  23699999999999999999999999876543

>d1bxoa_ b.50.1.2 (A:) Acid protease {Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Penicillium janthinellum), penicillopepsin [TaxId: 5079]

Probab=85.73  E-value=1.5  Score=36.37  Aligned_cols=91  Identities=14%  Similarity=0.155  Sum_probs=55.5

Q ss_pred             eeEEEEEEEEcCEEEEEEEcCCCcceecC-HHHHHHc--CCccccccc----e-e----eeeecCceeeEEeEEEEEEEE
Q psy8018         147 VIMLYINCRVNGHPVKAFIDSGAQTTIMS-AACAARV--NITRLIDTR----W-A----GIAKGVGVQRIIGRIHMVQIA  214 (280)
Q Consensus       147 ~~~l~i~~~InG~~v~alVDTGAq~tiis-~~~A~rl--gL~~~~d~r----~-~----g~a~gvG~~~~~g~i~~~~i~  214 (280)
                      ....++++.|++.+.++++|||++.+-+. ..| ..|  .-....+..    . .    ....|-| ....|.+....+.
T Consensus        14 d~~Y~~~i~vG~~~~~v~~DTGSs~~Wv~~~~C-~~c~~~~~~~y~~s~Sst~~~~~~~~~~Y~~G-~~~~G~~~~D~~~   91 (323)
T d1bxoa_          14 DEEYITPVTIGGTTLNLNFDTGSADLWVFSTEL-PASQQSGHSVYNPSATGKELSGYTWSISYGDG-SSASGNVFTDSVT   91 (323)
T ss_dssp             GSCEEEEEEETTEEEEEEEETTCCCEEECBTTS-CHHHHTTSCCBCHHHHCEEEEEEEEEEECTTS-CEEEEEEEEEEEE
T ss_pred             CcEEEEEEEECCccEEEEEECCCcceEEECCCC-CchhhcCCCCCCCcccccccCCCEEEEEeCCC-CcEEEEEEEEeee
Confidence            34678999999999999999999887663 332 112  111111111    0 1    1233433 3467888888999


Q ss_pred             ECCeEEEe-EEEEec--------CCCcccccchh
Q psy8018         215 IENDFLTT-SFSVLE--------DQPMDMLLGLD  239 (280)
Q Consensus       215 IG~~~~~~-~~~Vl~--------~~~~d~ILG~D  239 (280)
                      +++...+- .+.+..        ....|+|+|+-
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~GilGlg  125 (323)
T d1bxoa_          92 VGGVTAHGQAVQAAQQISAQFQQDTNNDGLLGLA  125 (323)
T ss_dssp             ETTEEEEEEEEEEEEEECHHHHTCTTCSEEEECS
T ss_pred             ccCcccccceeeeeeeeecccccccccccccccc
Confidence            99875542 233221        23678999984

>d1izea_ b.50.1.2 (A:) Acid protease {Fungus (Aspergillus oryzae) [TaxId: 5062]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Acid protease
species: Fungus (Aspergillus oryzae) [TaxId: 5062]

Probab=85.46  E-value=1.3  Score=36.78  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=55.0

Q ss_pred             eEEEEEEEEcCEEEEEEEcCCCcceecC-HHHHHHc--CCccccccce-----e----eeeecCceeeEEeEEEEEEEEE
Q psy8018         148 IMLYINCRVNGHPVKAFIDSGAQTTIMS-AACAARV--NITRLIDTRW-----A----GIAKGVGVQRIIGRIHMVQIAI  215 (280)
Q Consensus       148 ~~l~i~~~InG~~v~alVDTGAq~tiis-~~~A~rl--gL~~~~d~r~-----~----g~a~gvG~~~~~g~i~~~~i~I  215 (280)
                      ...++++.|+.+++.+++|||+..+-+. ..| ..|  ......+...     .    .+.+|-| ..+.|.+....+.+
T Consensus        15 ~~Y~~~i~iG~q~~~l~~DTGSs~~Wv~~~~C-~~~~~~~~~~~~~~sSt~~~~~~~~~i~Y~~G-~~~~G~~~~d~~~~   92 (323)
T d1izea_          15 EEYITQVTVGDDTLGLDFDTGSADLWVFSSQT-PSSERSGHDYYTPGSSAQKIDGATWSISYGDG-SSASGDVYKDKVTV   92 (323)
T ss_dssp             CCEEEEEEETTEEEEEEEETTCCCCEECBTTS-CHHHHTTSCCBCCCTTCEEEEEEEEEEECTTS-CEEEEEEEEEEEEE
T ss_pred             cEEEEEEEECCeeEEEEEECCCcceEEEcCCC-CChhhcCCCccCccccccccCCCEEEEEcCCc-ceeeeEEEeeeeec
Confidence            3478999999999999999999877663 332 222  2111111110     1    1223444 34578888889999


Q ss_pred             CCeEEEe-EEEEec--------CCCcccccchh
Q psy8018         216 ENDFLTT-SFSVLE--------DQPMDMLLGLD  239 (280)
Q Consensus       216 G~~~~~~-~~~Vl~--------~~~~d~ILG~D  239 (280)
                      ++..++- .|.+..        ....|+++|+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg  125 (323)
T d1izea_          93 GGVSYDSQAVESAEKVSSEFTQDTANDGLLGLA  125 (323)
T ss_dssp             TTEEEEEEEEEEEEEECHHHHHCTTCCEEEECS
T ss_pred             cCccccceEEEEEEeccCccccccccccccccc
Confidence            9876542 333332        23578999985

>d1t6ex_ b.50.1.2 (X:) Xylanase inhibitor TAXI-I {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Xylanase inhibitor TAXI-I
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=85.46  E-value=1.6  Score=37.21  Aligned_cols=31  Identities=16%  Similarity=0.112  Sum_probs=27.2

Q ss_pred             cccccchhhhhcceEEEEecccEEEeeeeec
Q psy8018         232 MDMLLGLDMLKRHQVQIAIENDFLTTSFSVL  262 (280)
Q Consensus       232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~  262 (280)
                      ...|||..|||.+-.+.|+.+++|-|...+.
T Consensus       344 ~~~ILG~~flr~~y~vfD~~~~~IGfA~~~~  374 (381)
T d1t6ex_         344 PAVILGGAQMEDFVLDFDMEKKRLGFSRLPH  374 (381)
T ss_dssp             CSEEECHHHHTTEEEEEETTTTEEEEEECCT
T ss_pred             CcEEECHHHhCcEEEEEECCCCEEEEEECCC
Confidence            3579999999999999999999998876544

>d1smra_ b.50.1.2 (A:) Chymosin (synonym: renin) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.27  E-value=0.37  Score=40.75  Aligned_cols=97  Identities=8%  Similarity=0.139  Sum_probs=53.8

Q ss_pred             EEEEEcCCCcceecCHHHHHHcCCccccccceee-eeecCceeeEEeEEEEEEEEECCeEEEeE----------------
Q psy8018         161 VKAFIDSGAQTTIMSAACAARVNITRLIDTRWAG-IAKGVGVQRIIGRIHMVQIAIENDFLTTS----------------  223 (280)
Q Consensus       161 v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~~g-~a~gvG~~~~~g~i~~~~i~IG~~~~~~~----------------  223 (280)
                      ..++||||.+.+.++.+.++++-  ..+...... ....+.... ........+.+|+..+.++                
T Consensus       215 ~~~iiDSGtt~~~lp~~~~~~l~--~~~~~~~~~~~~~~~~c~~-~~~~P~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C  291 (335)
T d1smra_         215 CEVVVDTGSSFISAPTSSLKLIM--QALGAKEKRLHEYVVSCSQ-VPTLPDISFNLGGRAYTLSSTDYVLQYPNRRDKLC  291 (335)
T ss_dssp             EEEEECTTBSSEEECHHHHHHHH--HHHTCEEEETTEEEEEGGG-GGGSCCEEEEETTEEEEECHHHHBTT----CCCEE
T ss_pred             ceEEEeCCCCcccCCHHHHHHHH--HHhCCeeccCCceeecccc-cCCCCccEEEECCeEEEEChHHeEEEeccCCCCEE
Confidence            56999999999999999988861  111111000 000000000 0001223455555433221                


Q ss_pred             -EEEe--c---CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         224 -FSVL--E---DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       224 -~~Vl--~---~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                       +.+.  +   ....-.|||..||+.+-.+.|+++++|-|...
T Consensus       292 ~~~~~~~~~~~~~~~~~ILG~~fl~~~yvvfD~~~~~iGfA~a  334 (335)
T d1smra_         292 TVALHAMDIPPPTGPVWVLGATFIRKFYTEFDRHNNRIGFALA  334 (335)
T ss_dssp             EBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEecCcCCCCCCcEEECHHHhCcEEEEEECCCCEEEEEEc
Confidence             1111  1   11122689999999999999999999988654

>d3psga_ b.50.1.2 (A:) Pepsin(ogen) {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.20  E-value=1.4  Score=37.84  Aligned_cols=91  Identities=15%  Similarity=0.281  Sum_probs=57.3

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCCcc--cccc----ce--e----eeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNITR--LIDT----RW--A----GIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL~~--~~d~----r~--~----g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  ++++++++|||+..+-+...-+..|....  ..+.    .+  .    ...+|-|+  ..|.+....+
T Consensus        56 ~~Y~~~i~iGtP~Q~~~vi~DTGSs~~Wv~~~~C~~~~~~~~~~yd~~~Sst~~~~~~~~~~~Yg~Gs--~~G~~~~d~~  133 (370)
T d3psga_          56 TEYFGTIGIGTPAQDFTVIFDTGSSNLWVPSVYCSSLACSDHNQFNPDDSSTFEATSQELSITYGTGS--MTGILGYDTV  133 (370)
T ss_dssp             CCEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEESSSCE--EEEEEEEEEE
T ss_pred             CEEEEEEEEcCCCeEEEEEEeCCCCCeEEECccCCCcccccccccCCCcccccccCCCcEEEEeCCce--EEEEEEEEEE
Confidence            5689999997  68999999999999988543333332211  1111    11  1    12345553  5688877789


Q ss_pred             EECCeEEE-eEEEEec--------CCCcccccchhh
Q psy8018         214 AIENDFLT-TSFSVLE--------DQPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~-~~~~Vl~--------~~~~d~ILG~D~  240 (280)
                      .+++...+ ..|.+..        ....|+|+|+.+
T Consensus       134 ~~~~~~~~~~~f~~~~~~~~~~~~~~~~~Gi~gl~~  169 (370)
T d3psga_         134 QVGGISDTNQIFGLSETEPGSFLYYAPFDGILGLAY  169 (370)
T ss_dssp             EETTEEEEEEEEEEECSCCCGGGGGCSCSEEEECSC
T ss_pred             eeeceeeeeeEEEEEeeccCceeccccccccccccc
Confidence            99987654 3444443        225789999864

>d1am5a_ b.50.1.2 (A:) Pepsin(ogen) {Atlantic cod (Gadus morhua) [TaxId: 8049]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Pepsin(ogen)
species: Atlantic cod (Gadus morhua) [TaxId: 8049]

Probab=85.03  E-value=0.52  Score=39.45  Aligned_cols=94  Identities=11%  Similarity=0.117  Sum_probs=54.4

Q ss_pred             EEEEEEcCCCcceecCHHHHHHc----CCccccccceeeeeecCceeeEEeEEEEEEEEECCeEEE-------------e
Q psy8018         160 PVKAFIDSGAQTTIMSAACAARV----NITRLIDTRWAGIAKGVGVQRIIGRIHMVQIAIENDFLT-------------T  222 (280)
Q Consensus       160 ~v~alVDTGAq~tiis~~~A~rl----gL~~~~d~r~~g~a~gvG~~~~~g~i~~~~i~IG~~~~~-------------~  222 (280)
                      ...++||||++.+.+..+..+++    +......... .......      ......+.+|+..++             |
T Consensus       208 ~~~~iiDsGts~~~lp~~~~~~l~~~i~~~~~~~~~~-~~~~~~~------~~P~i~f~f~g~~~~l~~~~y~~~~~~~c  280 (324)
T d1am5a_         208 GCQAIVDTGTSKIVAPVSALANIMKDIGASENQGEMM-GNCASVQ------SLPDITFTINGVKQPLPPSAYIEGDQAFC  280 (324)
T ss_dssp             CEEEEECTTCSSEEECTTTHHHHHHHHTCEECCCCEE-CCTTSSS------SSCCEEEEETTEEEEECHHHHEEESSSCE
T ss_pred             CcceeeccCcccccCCHHHHHHHHHHhCCcccCCccc-ccccccc------cCCceEEEECCEEEEECHHHhEecCCCeE
Confidence            45699999999999998877654    3221100000 0000001      122234555665433             2


Q ss_pred             EEEE--ec--CCCcc-cccchhhhhcceEEEEecccEEEeeee
Q psy8018         223 SFSV--LE--DQPMD-MLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       223 ~~~V--l~--~~~~d-~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      .+.+  ++  ....+ .|||..||+.+-++.|+++++|-|...
T Consensus       281 ~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~igfA~a  323 (324)
T d1am5a_         281 TSGLGSSGVPSNTSELWIFGDVFLRNYYTIYDRTNNKVGFAPA  323 (324)
T ss_dssp             EECEEECCSCCSSSCEEEECHHHHHHEEEEEETTTTEEEEEEB
T ss_pred             EEEEEecCcCCCCCCCEEECHHhhcCEEEEEECCCCEEEEEEc
Confidence            2222  11  11222 589999999999999999999988643

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.54  E-value=2.5  Score=36.25  Aligned_cols=86  Identities=14%  Similarity=0.270  Sum_probs=51.5

Q ss_pred             EEEEEEEEc--CEEEEEEEcCCCcceec-CHHHHHHcCCccccccc----e--e----eeeecCceeeEEeEEEEEEEEE
Q psy8018         149 MLYINCRVN--GHPVKAFIDSGAQTTIM-SAACAARVNITRLIDTR----W--A----GIAKGVGVQRIIGRIHMVQIAI  215 (280)
Q Consensus       149 ~l~i~~~In--G~~v~alVDTGAq~tii-s~~~A~rlgL~~~~d~r----~--~----g~a~gvG~~~~~g~i~~~~i~I  215 (280)
                      -.++++.|+  .+++.++||||++.+-+ +..|   |......+..    +  .    .+..|-|  ...|.+....+.+
T Consensus        15 ~Y~~~i~IGtP~Q~~~li~DTGSs~lWv~~~~c---~~~~~~f~~~~SsT~~~~~~~~~i~Y~~g--~~~G~~~~D~v~i   89 (387)
T d2qp8a1          15 GYYVEMTVGSPPQTLNILVDTGSSNFAVGAAPH---PFLHRYYQRQLSSTYRDLRKGVYVPYTQG--KWEGELGTDLVSI   89 (387)
T ss_dssp             EEEEEEEETTTTEEEEEEEETTCCCEEEECSCC---TTCSCCCCGGGCTTCEEEEEEEEEECSSC--EEEEEEEEEEEEC
T ss_pred             EEEEEEEECCCCEEEEEEEECCccceEEccCCC---CcCCCccCcccCCCcEeCCCcEEEEeCCc--cEEEEEEEEEEEE
Confidence            468999995  48999999999999877 3333   2222222111    1  1    1233444  3568888889999


Q ss_pred             CC---eEEEeEEEEec--------CCCcccccchh
Q psy8018         216 EN---DFLTTSFSVLE--------DQPMDMLLGLD  239 (280)
Q Consensus       216 G~---~~~~~~~~Vl~--------~~~~d~ILG~D  239 (280)
                      |+   ......+..+.        ....|+||||-
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dGilGLg  124 (387)
T d2qp8a1          90 PHGPNVTVRANIAAITESDKFFINGSNWEGILGLA  124 (387)
T ss_dssp             TTSCSCEEEEEEEEEEEEESCSCTTCCCCEEEECS
T ss_pred             cCCCceeEeEEEEEEEecCCccccccccccccccc
Confidence            75   22222233322        24578999975

>d1wxma1 d.15.1.5 (A:8-80) A-Raf proto-oncogene serine/threonine-protein kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: Ras-binding domain, RBD
domain: A-Raf proto-oncogene serine/threonine-protein kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.26  E-value=2.2  Score=28.96  Aligned_cols=45  Identities=11%  Similarity=0.098  Sum_probs=39.4

Q ss_pred             EEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEE--CC
Q psy8018           3 VTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEF--QG   47 (280)
Q Consensus         3 ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~--~G   47 (280)
                      |.|..++|+...+.|.|..|+.+.-+.+-++-|++++.-.++.  +|
T Consensus         3 iRv~LPngq~T~V~vrpG~tir~~L~k~l~kRgl~~~~~~V~~~~~g   49 (73)
T d1wxma1           3 VKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQDCCVVYRLIKG   49 (73)
T ss_dssp             EEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCSSSEEEEEESSS
T ss_pred             EEEEcCCCCeEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence            4556789999999999999999999999999999999888764  55

>d2qp8a1 b.50.1.2 (A:60-446) beta-secretase (memapsin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: beta-secretase (memapsin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.72  E-value=0.84  Score=39.43  Aligned_cols=32  Identities=9%  Similarity=0.100  Sum_probs=28.5

Q ss_pred             CcccccchhhhhcceEEEEecccEEEeeeeec
Q psy8018         231 PMDMLLGLDMLKRHQVQIAIENDFLTTSFSVL  262 (280)
Q Consensus       231 ~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~~~  262 (280)
                      ....|||..|||.+-.+.|+.+++|-|...+.
T Consensus       330 ~~~~ILG~~Flr~~y~vfD~~~~~IGfA~a~c  361 (387)
T d2qp8a1         330 STGTVMGAVIMEGFYVVFDRARKRIGFAVSAC  361 (387)
T ss_dssp             SSCEEECHHHHTTEEEEEETTTTEEEEEEETT
T ss_pred             CCCEEEhHHhhCcEEEEEECCCCEEEEEECCc
Confidence            44578999999999999999999999988766

>d1hrna_ b.50.1.2 (A:) Chymosin (synonym: renin) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Chymosin (synonym: renin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.48  E-value=0.98  Score=37.86  Aligned_cols=95  Identities=9%  Similarity=0.126  Sum_probs=54.1

Q ss_pred             EEEEEcCCCcceecCHHHHHHcCCccccccce--eeeeecCceeeEEeEEEEEEEEECCeEEEeE---------------
Q psy8018         161 VKAFIDSGAQTTIMSAACAARVNITRLIDTRW--AGIAKGVGVQRIIGRIHMVQIAIENDFLTTS---------------  223 (280)
Q Consensus       161 v~alVDTGAq~tiis~~~A~rlgL~~~~d~r~--~g~a~gvG~~~~~g~i~~~~i~IG~~~~~~~---------------  223 (280)
                      ..++||||++.+.+..+..+++-  ..+....  ......-..   ........+.+|+..+.++               
T Consensus       218 ~~~iiDSGtt~~~lp~~~~~~l~--~~~~~~~~~~~~~~~c~~---~~~~P~l~f~f~g~~~~l~p~~yl~~~~~~~~~~  292 (337)
T d1hrna_         218 CLALVDTGASYISGSTSSIEKLM--EALGAKKRLFDYVVKCNE---GPTLPDISFHLGGKEYTLTSADYVFQESYSSKKL  292 (337)
T ss_dssp             EEEEECTTCSSEEECHHHHHHHH--HHHTCEECSSCEEEETTT---GGGCCCEEEEETTEEEEECHHHHBCCCCCCTTSE
T ss_pred             cceEEeCCCcceeccHHHHHHHH--HHhCCcccccceeeeccc---cCCCCceeEEECCEEEEEChHHeEEEecCCCCCE
Confidence            46899999999999999888761  1111110  000000000   0012233556666544321               


Q ss_pred             --EEEe--c---CCCcccccchhhhhcceEEEEecccEEEeeee
Q psy8018         224 --FSVL--E---DQPMDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       224 --~~Vl--~---~~~~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                        +.+.  +   ...-..|||..||+.+-++.|+++++|-|...
T Consensus       293 C~~~i~~~~~~~~~~~~~ILG~~fl~~~y~vfD~~~~~IGfA~a  336 (337)
T d1hrna_         293 CTLAIHAMDIPPPTGPTWALGATFIRKFYTEFDRRNNRIGFALA  336 (337)
T ss_dssp             EEBSEEECCCCTTTCSCEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             EEEEEEcCCcCCCCCCCEEECHHhhCCEEEEEECCCCEEEEEEc
Confidence              1111  1   11112489999999999999999999988654

>d2cu3a1 d.15.3.2 (A:1-63) Uncharacterised protein TTHA0675 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Uncharacterised protein TTHA0675
species: Thermus thermophilus [TaxId: 274]

Probab=82.92  E-value=1.3  Score=29.07  Aligned_cols=56  Identities=20%  Similarity=0.286  Sum_probs=42.4

Q ss_pred             CCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           8 LDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         8 ~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      .+|+.+.  ++ ..|+.+|-..    .++++..-.+-+||..+.-  ....++-+++||.|.+..
T Consensus         4 vNGe~~~--~~-~~tl~~LL~~----l~~~~~~vAV~vN~~ivpr--~~~~~~~l~~gD~iEIv~   59 (63)
T d2cu3a1           4 LNGEPRP--LE-GKTLKEVLEE----MGVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVA   59 (63)
T ss_dssp             ETTEEEC--CT-TCCHHHHHHH----HTBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEE
T ss_pred             ECCEEEE--cC-CCCHHHHHHH----cCCCCCcEEEEECCEEcCH--HHcCcccCCCCCEEEEEE
Confidence            4787665  44 5687666543    5788888888899999963  467788999999999875

>d1miqa_ b.50.1.2 (A:) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium vivax [TaxId: 5855]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium vivax [TaxId: 5855]

Probab=82.87  E-value=0.75  Score=39.45  Aligned_cols=91  Identities=21%  Similarity=0.322  Sum_probs=54.9

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCC--ccccccc----e--ee----eeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNI--TRLIDTR----W--AG----IAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL--~~~~d~r----~--~g----~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...+.++.|+  .+++.+++|||++.+-+...-+..|+-  ....+..    +  .+    ...|-|  ...|.+....+
T Consensus        60 ~~Y~~~I~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~SsT~~~~~~~~~~~y~~G--~~~G~~~~D~v  137 (373)
T d1miqa_          60 IMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSG--TVKGFFSKDLV  137 (373)
T ss_dssp             EEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTE--EEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCEEEEEEEECCchheEEECCCCCCccccCCCccCCCCCCceeECCccEEEEeCCc--EEEEEEEEEEE
Confidence            4678999996  789999999999999884322222221  1111111    1  11    234444  46788888899


Q ss_pred             EECCeEEEeEEE-Eec---------CCCcccccchhh
Q psy8018         214 AIENDFLTTSFS-VLE---------DQPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~~~~~-Vl~---------~~~~d~ILG~D~  240 (280)
                      .+|+...+..+. +..         ....++++|+.+
T Consensus       138 ~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  174 (373)
T d1miqa_         138 TLGHLSMPYKFIEVTDTDDLEPIYSSVEFDGILGLGW  174 (373)
T ss_dssp             EETTEEEEEEEEEEEECGGGTTHHHHSCCCEEEECSS
T ss_pred             EEcCcceEeeEEEEEeccccCcccccccccccccccc
Confidence            999987664333 222         124566776543

>d1oeya_ d.15.2.2 (A:) Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Neutrophil cytosol factor 2 (p67phox component of NADPH oxidase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=1.4  Score=30.74  Aligned_cols=46  Identities=7%  Similarity=0.160  Sum_probs=38.9

Q ss_pred             CEEEEEcCCCcEEEEEeCCCccHHHHHHHHHHHhCCCCcceEEEEC
Q psy8018           1 MKVTVTSLDNECFLLDVSEDLELENFKAFCEVQSGISAQEIAIEFQ   46 (280)
Q Consensus         1 M~ItV~~~~g~~~~leV~~~~tV~~LK~~Ie~e~gip~~~Q~Li~~   46 (280)
                      |--+||.----++.+++.+..+..+|.++|.++...+++.-+|.|.
T Consensus         4 ~~~~vkVh~~fTVal~v~~G~~y~~L~~lvs~KL~l~~~~~~LSY~   49 (82)
T d1oeya_           4 MAYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYR   49 (82)
T ss_dssp             SCEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEEC
T ss_pred             CCEEEEEEEEEEEEEEccCCCCHHHHHHHHHHHhCCChhheEEEec
Confidence            3445554444678899999999999999999999999999999994

>d2bjua1 b.50.1.2 (A:1-329) Plasmepsin (a hemoglobin-degrading enzyme) {Plasmodium falciparum, plasmepsin II [TaxId: 5833]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plasmepsin (a hemoglobin-degrading enzyme)
species: Plasmodium falciparum, plasmepsin II [TaxId: 5833]

Probab=81.26  E-value=2.1  Score=35.27  Aligned_cols=91  Identities=20%  Similarity=0.294  Sum_probs=54.7

Q ss_pred             eEEEEEEEEc--CEEEEEEEcCCCcceecCHHHHHHcCCcc--cccc------cee----eeeecCceeeEEeEEEEEEE
Q psy8018         148 IMLYINCRVN--GHPVKAFIDSGAQTTIMSAACAARVNITR--LIDT------RWA----GIAKGVGVQRIIGRIHMVQI  213 (280)
Q Consensus       148 ~~l~i~~~In--G~~v~alVDTGAq~tiis~~~A~rlgL~~--~~d~------r~~----g~a~gvG~~~~~g~i~~~~i  213 (280)
                      ...++++.|+  .+++.+++|||+..+-+....+..|+-..  ..+.      +..    ...++-|  ...|......+
T Consensus        14 ~~Y~~~v~iGtP~q~~~~~~DTGS~~~Wv~~~~C~~~~~~~~~~y~~~~SsT~~~~~~~~~~~Y~~g--~~~G~~~~d~~   91 (329)
T d2bjua1          14 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSG--TVSGFFSKDLV   91 (329)
T ss_dssp             TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSS--EEEEEEEEEEE
T ss_pred             CEEEEEEEECCCCEEEEEEEECCCcceEEECCCCCCccccCCCCCCcccCCCccCCCccEEEEcCCC--cEEEEEEEeee
Confidence            4678999995  48999999999998866433223333211  1111      111    1233434  36788888899


Q ss_pred             EECCeEEEeEEEEe-c---------CCCcccccchhh
Q psy8018         214 AIENDFLTTSFSVL-E---------DQPMDMLLGLDM  240 (280)
Q Consensus       214 ~IG~~~~~~~~~Vl-~---------~~~~d~ILG~D~  240 (280)
                      .+++..+...+... .         ....++++|+.+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~  128 (329)
T d2bjua1          92 TVGNLSLPYKFIEVIDTNGFEPTYTASTFDGILGLGW  128 (329)
T ss_dssp             EETTEEEEEEEEEEEECGGGTTHHHHSSCCEEEECSC
T ss_pred             eeeeeeeccceEEEEEeeccCccccccccCccccccc
Confidence            99997665433222 2         125678888764

>d1qdma2 b.50.1.2 (A:2-247,A:248-338) Plant acid proteinase, phytepsin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Acid proteases
superfamily: Acid proteases
family: Pepsin-like
domain: Plant acid proteinase, phytepsin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=80.81  E-value=0.69  Score=38.41  Aligned_cols=29  Identities=7%  Similarity=-0.110  Sum_probs=25.7

Q ss_pred             cccccchhhhhcceEEEEecccEEEeeee
Q psy8018         232 MDMLLGLDMLKRHQVQIAIENDFLTTSFS  260 (280)
Q Consensus       232 ~d~ILG~D~L~~~~~~ID~~~~~L~i~~~  260 (280)
                      ...|||..||+.+-++.|+++++|-|...
T Consensus       308 ~~~IlG~~fl~~~y~vfD~~~~~igfA~a  336 (337)
T d1qdma2         308 PLWILGDVFMGPYHTVFDYGKLRIGFAKA  336 (337)
T ss_dssp             SEEEECHHHHTTEEEEEETTTTEEEEEEE
T ss_pred             CcEEEhHHhhcCEEEEEECCCCEEEEEEC
Confidence            34799999999999999999999998653

>d1tygb_ d.15.3.2 (B:) Thiamin biosynthesis sulfur carrier protein ThiS {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Bacillus subtilis [TaxId: 1423]

Probab=80.31  E-value=2.8  Score=27.38  Aligned_cols=57  Identities=11%  Similarity=0.184  Sum_probs=43.8

Q ss_pred             CCCcEEEEEeCCC-ccHHHHHHHHHHHhCCCCcceEEEECCeeeCCCcCCccccCCCCCCEEEEEE
Q psy8018           8 LDNECFLLDVSED-LELENFKAFCEVQSGISAQEIAIEFQGNALVDNKKTLKDYNIQDGDLVLLKR   72 (280)
Q Consensus         8 ~~g~~~~leV~~~-~tV~~LK~~Ie~e~gip~~~Q~Li~~Gk~L~d~~~tL~~~gI~~gd~l~l~~   72 (280)
                      .+|+.+  +++++ .|+.+|-+.    .++++..-.+-+||..+.-  ..-.++-+++||.|.+..
T Consensus         4 vNG~~~--~~~~~~~tl~~LL~~----l~~~~~~vAVevN~~iv~k--~~~~~~~L~~gD~IEIv~   61 (65)
T d1tygb_           4 LNGKDV--KWKKDTGTIQDLLAS----YQLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVH   61 (65)
T ss_dssp             ETTEEE--CCSSSCCBHHHHHHH----TTCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEE
T ss_pred             ECCEEE--EcCCCcccHHHHHHH----cCCCCCcEEEEECCEEcCH--HHcCcccCCCCCEEEEEE
Confidence            366654  55554 599988554    5888888889999999963  467788899999999875