Psyllid ID: psy8579

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGKKVNPQGY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHcccEEEccccEEEEEEEEcccccccHHHHHHHHHcccccccccccEEEEEEccccccEEEEEEEcccEEEEEcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccEEEEEccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHcccEEEcccEEEEEEEEcccccccccHHHEEEEccccEEEccccEEEEEEEccccccEEEEEEccccEEEEEcccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccccEEEEEEccccccccccccccHccccEEccccc
Coil and Loop (DISEMBL)
mgfligeapiRRTLKYLNAGRIVFKDKIKIFAINYnfnaenhrgaKEFVFWHFtqiqfknpnvqlqvfknmtptpfiTTYLENGSEmlidvdnkskdeIHDHVLKVLGKSEQVLKAEAIARekkdnpanfgfkcekhcicqipgqitcpglvrlpdsmrgkkvnpqgy
Flexible Loop (DISEMBL)
mgfligeapirrtlKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQItcpglvrlpdsmrgkkvnpqgy
Low Complexity Region (SEG)
MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGKKVNPQGY
Disordered region (IsUnstruct)
**FLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA******PANFGFKCEKHCICQIPGQITCPGLVRL**************
Disordered Region (DISOPRED)
*****GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGK********************FGFKCEKHCICQIPGQITCPGLVRLPDSMRGKK******
Disordered Region (DISEMBL)
MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMR*********
Disordered Region (DISPRO)
**FLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGKKVN****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGKKVNPQGY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9VY28	167	Probable 28S ribosomal pr	yes	N/A	0.958	0.964	0.577	4e-56
P82669	173	28S ribosomal protein S25	yes	N/A	0.928	0.901	0.5	3e-43
P82663	173	28S ribosomal protein S25	yes	N/A	0.928	0.901	0.5	1e-41
Q4QR80	171	28S ribosomal protein S25	yes	N/A	0.928	0.912	0.487	1e-39
Q9D125	171	28S ribosomal protein S25	yes	N/A	0.928	0.912	0.487	4e-39
Q9N361	170	Probable 28S ribosomal pr	yes	N/A	0.958	0.947	0.388	1e-31

>sp|Q9VY28|RT25_DROME Probable 28S ribosomal protein S25, mitochondrial OS=Drosophila melanogaster GN=mRpS25 PE=2 SV=1

 Score =  216 bits (551), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 93/161 (57%), Positives = 127/161 (78%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+ G  PIRRTLKYLNAG++V KDK++IF++NYN    +H GA++FVFW+  QIQFKN
Sbjct: 1   MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVFWNIPQIQFKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P VQ+   KNMTP+PF+  Y ++G +MLID+D++++++I DH++KV+GK+ + L AE   
Sbjct: 61  PEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDIIDHLVKVVGKTREQLDAEERL 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
           +E KDNPANFG+ C +HCIC+IPGQ+ CPG V LPD MRGK
Sbjct: 121 KESKDNPANFGYGCGRHCICEIPGQVPCPGTVPLPDHMRGK 161

Drosophila melanogaster (taxid: 7227)

>sp|P82669|RT25_BOVIN 28S ribosomal protein S25, mitochondrial OS=Bos taurus GN=MRPS25 PE=1 SV=2

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 115/158 (72%), Gaps = 2/158 (1%)

Query: 6   GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
           G  PIRRTL+YL+ G +VFKD +K+  +NYN + E   GA++FVF++  QIQ+KNP VQ+
Sbjct: 5   GRFPIRRTLQYLSQGDVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query: 66  QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
            +FKNMTPTPF+  YL++G ++L+DV+ KS  EI +HV K+LGK+E+ L+ E   RE+  
Sbjct: 65  MLFKNMTPTPFLRFYLDSGEQVLVDVETKSNKEIMEHVKKILGKNEETLRRERQEREQLS 124

Query: 126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
           +PA+FG +  C + CIC++ GQ+ CP +V LP  + GK
Sbjct: 125 HPAHFGPRKYCLRECICEVEGQVPCPAVVPLPRELTGK 162

Bos taurus (taxid: 9913)

>sp|P82663|RT25_HUMAN 28S ribosomal protein S25, mitochondrial OS=Homo sapiens GN=MRPS25 PE=1 SV=1

 Score =  168 bits (426), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 79/158 (50%), Positives = 116/158 (73%), Gaps = 2/158 (1%)

Query: 6   GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
           G  PIRRTL+YL+ G +VFKD +K+  +NYN + E   GA++FVF++  QIQ+KNP VQ+
Sbjct: 5   GRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query: 66  QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
            +FKNMTP+PF+  YL++G ++L+DV+ KS  EI +H+ K+LGK+E+ L+ E   +++  
Sbjct: 65  MMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLS 124

Query: 126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
           +PANFG +  C + CIC++ GQ+ CP LV LP  MRGK
Sbjct: 125 HPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRGK 162

Homo sapiens (taxid: 9606)

>sp|Q4QR80|RT25_RAT 28S ribosomal protein S25, mitochondrial OS=Rattus norvegicus GN=Mrps25 PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 116/158 (73%), Gaps = 2/158 (1%)

Query: 6   GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
           G  PIRRTL+YL +G +VFK+ +K+  +NYN + E   GA++FVF++  QIQ+KNP VQ+
Sbjct: 5   GRFPIRRTLQYLGSGDVVFKESVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query: 66  QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
            +FKNMTP+PF+  YLE+G ++L+DV+ KS  EI +H+ K+LGK E+ L+ E + ++++ 
Sbjct: 65  MLFKNMTPSPFLRFYLESGEQVLVDVETKSNTEIVEHIKKILGKKEETLREEELEKQQRF 124

Query: 126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
           +P NFG +  C + C+C++ GQ+ CPGLV LP  M GK
Sbjct: 125 HPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGK 162

Rattus norvegicus (taxid: 10116)

>sp|Q9D125|RT25_MOUSE 28S ribosomal protein S25, mitochondrial OS=Mus musculus GN=Mrps25 PE=1 SV=1

 Score =  160 bits (404), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 77/158 (48%), Positives = 114/158 (72%), Gaps = 2/158 (1%)

Query: 6   GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
           G  PIRRTL+YL  G +VFK+ +KI  +NYN   E   GA++FVF++  QIQ+KNP VQ+
Sbjct: 5   GRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query: 66  QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
            +FKNMTP+PF+  YL++G ++L+DV+ KS  EI +H+ K+LGK E+ L+ E + ++++ 
Sbjct: 65  MMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRF 124

Query: 126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
           +P NFG +  C + C+C++ GQ+ CPGLV LP  M GK
Sbjct: 125 HPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGK 162

Mus musculus (taxid: 10090)

>sp|Q9N361|RT25_CAEEL Probable 28S ribosomal protein S25, mitochondrial OS=Caenorhabditis elegans GN=Y55F3AM.1 PE=3 SV=1

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/162 (38%), Positives = 98/162 (60%), Gaps = 1/162 (0%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFN-AENHRGAKEFVFWHFTQIQFK 59
           M F+ G  P+RRT  YL  G++  +D + +F++ ++ N      GA++FV+W++ Q+Q+ 
Sbjct: 1   MPFMHGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQSGARDFVYWNWAQLQYH 60

Query: 60  NPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAI 119
           NP VQL    +   TPF   YL +G E+L D+D   ++EI   + K LGK+E V + E +
Sbjct: 61  NPKVQLVKHADKVVTPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHL 120

Query: 120 AREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
               K NPA+FG K E+ C+C++ GQ  C GL+R P  + GK
Sbjct: 121 ESIAKLNPADFGSKNERQCMCEVQGQHPCTGLLRAPQCVTGK 162

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
332020822	171	Putative 28S ribosomal protein S25, mito	0.970	0.953	0.625	1e-58
307187765	171	Probable 28S ribosomal protein S25, mito	0.970	0.953	0.601	2e-58
193580206	167	PREDICTED: probable 28S ribosomal protei	0.994	1.0	0.610	7e-58
91083589	168	PREDICTED: similar to mitochondrial 28S	0.958	0.958	0.614	1e-57
332376659	168	unknown [Dendroctonus ponderosae]	0.958	0.958	0.596	5e-57
156543332	169	PREDICTED: probable 28S ribosomal protei	0.958	0.952	0.627	6e-57
195425777	167	GK10306 [Drosophila willistoni] gi|19415	0.958	0.964	0.608	1e-56
118792567	168	AGAP012136-PA [Anopheles gambiae str. PE	0.958	0.958	0.608	2e-56
194895035	167	GG19455 [Drosophila erecta] gi|190649818	0.958	0.964	0.590	1e-55
239793600	155	ACYPI008157 [Acyrthosiphon pisum]	0.922	1.0	0.625	1e-55

>gi|332020822|gb|EGI61220.1| Putative 28S ribosomal protein S25, mitochondrial [Acromyrmex echinatior]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 129/163 (79%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+IG+ P+RRT+KYL AG++V KDKI+I +INYN     HRG ++FVFWH  Q+Q+KN
Sbjct: 1   MPFMIGKEPMRRTVKYLMAGKLVLKDKIQIMSINYNTYGSRHRGTRDFVFWHLPQLQYKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           PNVQ+  F+N+TP+PFI  Y  NG  MLID+D+KSKD+I DH+LKV+GKS  VLK EAI 
Sbjct: 61  PNVQIVTFRNITPSPFIKCYYANGETMLIDIDSKSKDDILDHLLKVVGKSLDVLKEEAIV 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGKKV 163
           +EKK NPANFG  C++ CIC IPGQ+ CPG+V LPD MRGKK+
Sbjct: 121 QEKKTNPANFGVGCDRSCICHIPGQVPCPGIVPLPDHMRGKKI 163

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307187765|gb|EFN72737.1| Probable 28S ribosomal protein S25, mitochondrial [Camponotus floridanus]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 98/163 (60%), Positives = 133/163 (81%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+IG+ P+RRTLKYL +G +V KDKI+I AINYN ++++HRGA++F+FWH +Q+Q+KN
Sbjct: 1   MPFMIGKEPVRRTLKYLMSGPLVLKDKIQILAINYNTHSDHHRGARDFIFWHLSQLQYKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P VQ+  +KNMTP+PFI  Y E+G  MLID+D+KSKDEI  H+++V+GKS+  LK EA+ 
Sbjct: 61  PTVQIVTYKNMTPSPFIKCYYEDGKTMLIDIDSKSKDEILQHLVRVVGKSKATLKQEALT 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGKKV 163
           +E+KDNPANFG KC+K C+C IPGQ+ CPG+V LP  MRGK +
Sbjct: 121 KEEKDNPANFGVKCKKSCMCHIPGQVPCPGVVPLPHHMRGKYI 163

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193580206|ref|XP_001945038.1| PREDICTED: probable 28S ribosomal protein S25, mitochondrial-like [Acyrthosiphon pisum]

 Score =  228 bits (581), Expect = 7e-58,   Method: Compositional matrix adjust.
 Identities = 102/167 (61%), Positives = 131/167 (78%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+ G APIRRT++YL AG+IVFKD+IKI +I+YN   ENHRG ++FVFWH  QIQ+KN
Sbjct: 1   MPFMKGAAPIRRTIQYLEAGKIVFKDRIKIVSIHYNTLGENHRGTRDFVFWHLPQIQYKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P+VQ+   KNMTPTPFI  ++ +G ++LIDVDN+ KD IHDHVL+VLGK ++ L  EA+A
Sbjct: 61  PDVQVMTLKNMTPTPFIRCFMSDGKDLLIDVDNRDKDRIHDHVLQVLGKPKETLHMEAMA 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGKKVNPQG 167
           +EKKDN ANFG+ CEKHC+C+I GQ+ CP +V LP S RGK  N + 
Sbjct: 121 KEKKDNIANFGYMCEKHCMCEIFGQVPCPAVVPLPKSWRGKYKNEES 167

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083589|ref|XP_968607.1| PREDICTED: similar to mitochondrial 28S ribosomal protein S25 [Tribolium castaneum] gi|270006843|gb|EFA03291.1| hypothetical protein TcasGA2_TC013231 [Tribolium castaneum]

 Score =  227 bits (579), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 99/161 (61%), Positives = 134/161 (83%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+IG APIRRTL++L AGR++ KD+IKI A++Y+   EN++G K+FVFW   QIQ+KN
Sbjct: 1   MPFMIGPAPIRRTLQFLEAGRLILKDQIKIMAVHYHLVGENNKGTKDFVFWCLPQIQYKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           PNVQ+  FKN+TP+PFI  + E G EMLIDVD KSK+EI++H+++V+GK++ VL+AE+I+
Sbjct: 61  PNVQIATFKNLTPSPFIRCFYETGDEMLIDVDGKSKEEIYEHLIRVVGKTKDVLEAESIS 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
           REKKDNPANFG  C++ CIC++PGQI CPG+V LP+ MRGK
Sbjct: 121 REKKDNPANFGVGCDRQCICELPGQIPCPGVVPLPNHMRGK 161

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376659|gb|AEE63469.1| unknown [Dendroctonus ponderosae]

 Score =  225 bits (574), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 96/161 (59%), Positives = 127/161 (78%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+ G APIRRT+KYL AGR+  KD++KI  +NYN + ++H+GA+EFVFWH   IQ+KN
Sbjct: 1   MPFMKGPAPIRRTIKYLEAGRLCLKDQLKILTVNYNIHGQSHQGAREFVFWHLPHIQYKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P VQ+  FKN+TP+PFI T+ + G  MLID+D +SKDEI++H+++V+GK  + L AE IA
Sbjct: 61  PQVQIATFKNVTPSPFIRTFYDTGDHMLIDIDGRSKDEIYEHLIRVVGKDRETLMAENIA 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
           +EKKDNPANFG  C++HCIC+IPGQI CPG   LP+ MRGK
Sbjct: 121 KEKKDNPANFGVGCDRHCICEIPGQIPCPGTCPLPNHMRGK 161

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543332|ref|XP_001607001.1| PREDICTED: probable 28S ribosomal protein S25, mitochondrial-like [Nasonia vitripennis]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 101/161 (62%), Positives = 128/161 (79%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+IG  PIRRT+KYL AG++V K+ I++  INYN + ++H+G +EFVFWH  Q+ +KN
Sbjct: 1   MPFMIGREPIRRTVKYLEAGKLVLKNSIQVMQINYNTHGQHHQGLREFVFWHLPQVLYKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P VQ+   KN TP+PFI  + E+G  MLIDVD KSKDEI DH+LKV+GKS++VL  EA+A
Sbjct: 61  PEVQVLTIKNRTPSPFIWCFYESGKRMLIDVDMKSKDEILDHLLKVIGKSKEVLDQEAVA 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
           +EKKDNPANFG+ CEK CIC+IPGQI CPGLV LP+ MRGK
Sbjct: 121 KEKKDNPANFGYGCEKSCICEIPGQIPCPGLVPLPNHMRGK 161

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195425777|ref|XP_002061145.1| GK10306 [Drosophila willistoni] gi|194157230|gb|EDW72131.1| GK10306 [Drosophila willistoni]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 126/161 (78%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+ G  PIRRTLKYLNAG++V KDK++IF++NYN   E+H GA+EFVFW+  Q+QFKN
Sbjct: 1   MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGEHHAGAREFVFWNIPQVQFKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P VQ+   KNMTP+PF+  Y E+G +MLID+D K  D+I DH++KV+GK+ + L AEA  
Sbjct: 61  PQVQVLTLKNMTPSPFVRCYFEDGRDMLIDIDGKGHDDIIDHLVKVVGKTREQLDAEARL 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
            E KDNPANFG+ C++HCIC+IPGQI CPG V LP+ MRGK
Sbjct: 121 AESKDNPANFGYGCDRHCICEIPGQIACPGTVPLPEKMRGK 161

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|118792567|ref|XP_320391.3| AGAP012136-PA [Anopheles gambiae str. PEST] gi|116116959|gb|EAA00469.3| AGAP012136-PA [Anopheles gambiae str. PEST]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 129/161 (80%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+ G+APIRRTL+YLNAG+++ KDK+KIF++NYN   E+H GA++FVFW+  QIQ+KN
Sbjct: 1   MPFMKGKAPIRRTLQYLNAGQLMLKDKVKIFSVNYNTYGEHHEGARDFVFWNIPQIQYKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P VQ+  FKNMTP+PFI  Y ENG +MLID+D+K++ EI  H+  V+GKS++ LKAEA  
Sbjct: 61  PKVQVVTFKNMTPSPFIRCYFENGKQMLIDIDSKNRQEILQHLTTVVGKSDETLKAEAKL 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
            EK+DNPANFG  C KHCIC++PGQ+ CPG+V +P  MRGK
Sbjct: 121 AEKQDNPANFGIGCMKHCICEVPGQLPCPGVVPVPKHMRGK 161

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194895035|ref|XP_001978169.1| GG19455 [Drosophila erecta] gi|190649818|gb|EDV47096.1| GG19455 [Drosophila erecta]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 95/161 (59%), Positives = 128/161 (79%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+ G  PIRRTLKYLNAG++V KDK++IF++NYN   ++H GA++FVFW+  QIQFKN
Sbjct: 1   MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGDHHAGARDFVFWNIPQIQFKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P VQ+   KNMTP+PF+  Y E+G +MLIDVD +++D+I +H++KV+GK+ + L AE   
Sbjct: 61  PEVQVLTMKNMTPSPFVRCYFEDGRDMLIDVDGRNRDDIIEHLVKVVGKTREQLDAEERL 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
           +E KDNPANFG+ C +HCIC+IPGQ++CPG V LPD MRGK
Sbjct: 121 KESKDNPANFGYGCGRHCICEIPGQVSCPGTVPLPDHMRGK 161

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239793600|dbj|BAH72909.1| ACYPI008157 [Acyrthosiphon pisum]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 97/155 (62%), Positives = 125/155 (80%)

Query: 1   MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
           M F+ G APIRRT++YL AG+IVFKD+IKI +I+YN   ENHRG ++FVFWH  QIQ+KN
Sbjct: 1   MPFMKGAAPIRRTIQYLEAGKIVFKDRIKIVSIHYNTLGENHRGTRDFVFWHLPQIQYKN 60

Query: 61  PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
           P+VQ+   KNMTPTPFI  ++ +G ++LIDVDN+ KD IHDHVL+VLGK ++ L  EA+A
Sbjct: 61  PDVQVMTLKNMTPTPFIRCFMSDGKDLLIDVDNRDKDRIHDHVLQVLGKPKETLHMEAMA 120

Query: 121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLP 155
           +EKKDN ANFG+ CEKHC+C+I GQ+ CP +V LP
Sbjct: 121 KEKKDNIANFGYMCEKHCMCEIFGQVPCPAVVPLP 155

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
FB|FBgn0030572	167	mRpS25 "mitochondrial ribosoma	0.958	0.964	0.577	8e-53
UNIPROTKB|P82663	173	MRPS25 "28S ribosomal protein	0.928	0.901	0.5	1.2e-42
RGD|1308770	171	Mrps25 "mitochondrial ribosoma	0.928	0.912	0.487	3.2e-42
UNIPROTKB|P82669	173	MRPS25 "28S ribosomal protein	0.928	0.901	0.5	8.4e-42
MGI|MGI:1928140	171	Mrps25 "mitochondrial ribosoma	0.928	0.912	0.487	1.4e-41
UNIPROTKB|E1BSI6	173	MRPS25 "Uncharacterized protei	0.928	0.901	0.462	7.8e-39
ZFIN|ZDB-GENE-050417-52	173	mrps25 "mitochondrial ribosoma	0.928	0.901	0.481	1.1e-37
WB|WBGene00021920	170	mrps-25 [Caenorhabditis elegan	0.958	0.947	0.388	6.9e-31
UNIPROTKB|B4DFJ5	145	MRPS25 "cDNA FLJ59193, highly	0.660	0.765	0.522	6.2e-30
UNIPROTKB|E7EPW2	110	MRPS25 "28S ribosomal protein	0.630	0.963	0.528	2.7e-29

FB|FBgn0030572 mRpS25 "mitochondrial ribosomal protein S25" [Drosophila melanogaster (taxid:7227)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 93/161 (57%), Positives = 127/161 (78%)

Query:     1 MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKN 60
             M F+ G  PIRRTLKYLNAG++V KDK++IF++NYN    +H GA++FVFW+  QIQFKN
Sbjct:     1 MPFMKGREPIRRTLKYLNAGKLVLKDKVRIFSVNYNTYGAHHAGARDFVFWNIPQIQFKN 60

Query:    61 PNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIA 120
             P VQ+   KNMTP+PF+  Y ++G +MLID+D++++++I DH++KV+GK+ + L AE   
Sbjct:    61 PEVQVLTLKNMTPSPFVRCYFDDGRDMLIDLDSRNRNDIIDHLVKVVGKTREQLDAEERL 120

Query:   121 REKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
             +E KDNPANFG+ C +HCIC+IPGQ+ CPG V LPD MRGK
Sbjct:   121 KESKDNPANFGYGCGRHCICEIPGQVPCPGTVPLPDHMRGK 161

GO:0003735 "structural constituent of ribosome" evidence=ISS;NAS

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS;NAS

UNIPROTKB|P82663 MRPS25 "28S ribosomal protein S25, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 451 (163.8 bits), Expect = 1.2e-42, P = 1.2e-42
 Identities = 79/158 (50%), Positives = 116/158 (73%)

Query:     6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
             G  PIRRTL+YL+ G +VFKD +K+  +NYN + E   GA++FVF++  QIQ+KNP VQ+
Sbjct:     5 GRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query:    66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
              +FKNMTP+PF+  YL++G ++L+DV+ KS  EI +H+ K+LGK+E+ L+ E   +++  
Sbjct:    65 MMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEETLREEEEEKKQLS 124

Query:   126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
             +PANFG +  C + CIC++ GQ+ CP LV LP  MRGK
Sbjct:   125 HPANFGPRKYCLRECICEVEGQVPCPSLVPLPKEMRGK 162

GO:0005763 "mitochondrial small ribosomal subunit" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

RGD|1308770 Mrps25 "mitochondrial ribosomal protein S25" [Rattus norvegicus (taxid:10116)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 77/158 (48%), Positives = 116/158 (73%)

Query:     6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
             G  PIRRTL+YL +G +VFK+ +K+  +NYN + E   GA++FVF++  QIQ+KNP VQ+
Sbjct:     5 GRFPIRRTLQYLGSGDVVFKESVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query:    66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
              +FKNMTP+PF+  YLE+G ++L+DV+ KS  EI +H+ K+LGK E+ L+ E + ++++ 
Sbjct:    65 MLFKNMTPSPFLRFYLESGEQVLVDVETKSNTEIVEHIKKILGKKEETLREEELEKQQRF 124

Query:   126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
             +P NFG +  C + C+C++ GQ+ CPGLV LP  M GK
Sbjct:   125 HPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGK 162

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|P82669 MRPS25 "28S ribosomal protein S25, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 79/158 (50%), Positives = 115/158 (72%)

Query:     6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
             G  PIRRTL+YL+ G +VFKD +K+  +NYN + E   GA++FVF++  QIQ+KNP VQ+
Sbjct:     5 GRFPIRRTLQYLSQGDVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query:    66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
              +FKNMTPTPF+  YL++G ++L+DV+ KS  EI +HV K+LGK+E+ L+ E   RE+  
Sbjct:    65 MLFKNMTPTPFLRFYLDSGEQVLVDVETKSNKEIMEHVKKILGKNEETLRRERQEREQLS 124

Query:   126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
             +PA+FG +  C + CIC++ GQ+ CP +V LP  + GK
Sbjct:   125 HPAHFGPRKYCLRECICEVEGQVPCPAVVPLPRELTGK 162

GO:0003735 "structural constituent of ribosome" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

MGI|MGI:1928140 Mrps25 "mitochondrial ribosomal protein S25" [Mus musculus (taxid:10090)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 77/158 (48%), Positives = 114/158 (72%)

Query:     6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
             G  PIRRTL+YL  G +VFK+ +KI  +NYN   E   GA++FVF++  QIQ+KNP VQ+
Sbjct:     5 GRFPIRRTLQYLGRGDVVFKESVKIMTVNYNTYGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query:    66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
              +FKNMTP+PF+  YL++G ++L+DV+ KS  EI +H+ K+LGK E+ L+ E + ++++ 
Sbjct:    65 MMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIKKILGKKEETLREEELEKQQRF 124

Query:   126 NPANFGFK--CEKHCICQIPGQITCPGLVRLPDSMRGK 161
             +P NFG +  C + C+C++ GQ+ CPGLV LP  M GK
Sbjct:   125 HPGNFGPRKYCLRECMCEVEGQVPCPGLVPLPKEMTGK 162

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005763 "mitochondrial small ribosomal subunit" evidence=ISS

GO:0005840 "ribosome" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|E1BSI6 MRPS25 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 73/158 (46%), Positives = 111/158 (70%)

Query:     6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
             G  P+RRTL+YL+ G ++FK  +K+  +NYN   E   GA++FVF++  QIQ+KNP VQ+
Sbjct:     5 GRFPVRRTLQYLSQGDVIFKSSVKVMTVNYNTAGEPSEGARKFVFFNIPQIQYKNPWVQI 64

Query:    66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
              + +NMTP+PF+  YL++G ++L+DV++K+  EI +H+ ++LGKS++ L+ E   REK  
Sbjct:    65 MLLRNMTPSPFLRFYLDSGEQVLVDVEDKTNKEITEHIKRILGKSKETLEKEEREREKLS 124

Query:   126 NPANFGFKCE--KHCICQIPGQITCPGLVRLPDSMRGK 161
             +PA FG K    + C+C+I GQ+ CP  V LP  MRGK
Sbjct:   125 HPATFGPKKYHLRECMCEIEGQVPCPAFVPLPKEMRGK 162

GO:0005739 "mitochondrion" evidence=IEA

ZFIN|ZDB-GENE-050417-52 mrps25 "mitochondrial ribosomal protein S25" [Danio rerio (taxid:7955)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 76/158 (48%), Positives = 110/158 (69%)

Query:     6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
             G  PIRRTL+YL  G +VFK  ++I  +NYN + +   GA+ FVF+   QIQ++NP VQ+
Sbjct:     5 GRFPIRRTLEYLQKGEVVFKKSVRIMTVNYNTHGDLSEGARSFVFFKIPQIQYRNPWVQI 64

Query:    66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKD 125
              +FKNMTP+PF+  YL++G ++L+DV+ K   EI +HV K+LGK+++VL+AEA A+ +  
Sbjct:    65 MMFKNMTPSPFLRFYLDDGEQVLVDVEGKHYKEITEHVKKILGKTDEVLQAEAAAKMELF 124

Query:   126 NPANFGFKCE--KHCICQIPGQITCPGLVRLPDSMRGK 161
             NPANFG K    + C+ ++ GQ+  PG V LP  M GK
Sbjct:   125 NPANFGPKKYFLRECMSEVEGQVPHPGRVPLPKEMTGK 162

GO:0008150 "biological_process" evidence=ND

WB|WBGene00021920 mrps-25 [Caenorhabditis elegans (taxid:6239)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 63/162 (38%), Positives = 98/162 (60%)

Query:     1 MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFN-AENHRGAKEFVFWHFTQIQFK 59
             M F+ G  P+RRT  YL  G++  +D + +F++ ++ N      GA++FV+W++ Q+Q+ 
Sbjct:     1 MPFMHGSMPLRRTFFYLQQGKVKLRDNVNVFSMGFHKNPTPEQSGARDFVYWNWAQLQYH 60

Query:    60 NPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAI 119
             NP VQL    +   TPF   YL +G E+L D+D   ++EI   + K LGK+E V + E +
Sbjct:    61 NPKVQLVKHADKVVTPFARAYLNDGREVLFDLDGMKREEIEKLLAKTLGKTELVERREHL 120

Query:   120 AREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRGK 161
                 K NPA+FG K E+ C+C++ GQ  C GL+R P  + GK
Sbjct:   121 ESIAKLNPADFGSKNERQCMCEVQGQHPCTGLLRAPQCVTGK 162

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|B4DFJ5 MRPS25 "cDNA FLJ59193, highly similar to Mitochondrial 28S ribosomal protein S25" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 58/111 (52%), Positives = 84/111 (75%)

Query:     6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
             G  PIRRTL+YL+ G +VFKD +K+  +NYN + E   GA++FVF++  QIQ+KNP VQ+
Sbjct:     5 GRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query:    66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKA 116
              +FKNMTP+PF+  YL++G ++L+DV+ KS  EI +H+ K+LGK+E  L A
Sbjct:    65 MMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNEHYLAA 115

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|E7EPW2 MRPS25 "28S ribosomal protein S25, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 56/106 (52%), Positives = 82/106 (77%)

Query:     6 GEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQL 65
             G  PIRRTL+YL+ G +VFKD +K+  +NYN + E   GA++FVF++  QIQ+KNP VQ+
Sbjct:     5 GRFPIRRTLQYLSQGNVVFKDSVKVMTVNYNTHGELGEGARKFVFFNIPQIQYKNPWVQI 64

Query:    66 QVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKVLGKSE 111
              +FKNMTP+PF+  YL++G ++L+DV+ KS  EI +H+ K+LGK+E
Sbjct:    65 MMFKNMTPSPFLRFYLDSGEQVLVDVETKSNKEIMEHIRKILGKNE 110

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N361	RT25_CAEEL	No assigned EC number	0.3888	0.9583	0.9470	yes	N/A
Q9VY28	RT25_DROME	No assigned EC number	0.5776	0.9583	0.9640	yes	N/A
Q4QR80	RT25_RAT	No assigned EC number	0.4873	0.9285	0.9122	yes	N/A
P82669	RT25_BOVIN	No assigned EC number	0.5	0.9285	0.9017	yes	N/A
Q9D125	RT25_MOUSE	No assigned EC number	0.4873	0.9285	0.9122	yes	N/A
P82663	RT25_HUMAN	No assigned EC number	0.5	0.9285	0.9017	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
smart00916	70	smart00916, L51_S25_CI-B8, Mitochondrial ribosomal	3e-18
pfam05047	52	pfam05047, L51_S25_CI-B8, Mitochondrial ribosomal	2e-12

>gnl|CDD|197984 smart00916, L51_S25_CI-B8, Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

 Score = 73.7 bits (182), Expect = 3e-18
 Identities = 20/70 (28%), Positives = 36/70 (51%)

Query: 40  ENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEI 99
            +  GA++F+  +   ++FKNP+V + V +     P +T   ENG E  I + N S +EI
Sbjct: 1   GSSAGARKFLESNLPTLKFKNPDVPILVRERSGVVPKLTAEYENGREKEISLRNLSAEEI 60

Query: 100 HDHVLKVLGK 109
              +  ++  
Sbjct: 61  LKKLQLLVNS 70

Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) . It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Length = 70

>gnl|CDD|191176 pfam05047, L51_S25_CI-B8, Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain

 Score = 58.7 bits (143), Expect = 2e-12
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 45 AKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKS 95
          A++F+  +   +++KNP V + V +     P +     NG E  ID+ N S
Sbjct: 1  ARDFLEKNLPTLKYKNPQVPILVRERSGKHPRLLARYLNGREKTIDLRNLS 51

The proteins in this family are located in the mitochondrion. The family includes ribosomal protein L51, and S25. This family also includes mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) EC:1.6.5.3. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins. Length = 52

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG4079|consensus	169		100.0
KOG3445|consensus	145		99.88
KOG3446|consensus	97		99.76
PF05047	52	L51_S25_CI-B8: Mitochondrial ribosomal protein L51	99.7
PF08806	78	Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR	92.45
PF10780	51	MRP_L53: 39S ribosomal protein L53/MRP-L53; InterP	91.83
PF14847	105	Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A	84.27

>KOG4079|consensus

Probab=100.00  E-value=2.2e-75  Score=449.59  Aligned_cols=165  Identities=52%  Similarity=0.994  Sum_probs=163.3

Q ss_pred             CCCCCCChhHHHHHHHHhccCccccCCceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEE
Q psy8579           1 MGFLIGEAPIRRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTY   80 (168)
Q Consensus         1 m~f~~g~~pi~rtl~yL~~g~~~l~~~Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~   80 (168)
                      ||||+||+||||||+||++|+++|+|+|+.++++|++++..+.||||||+|++|||||+||+||++.+++++++||+++|
T Consensus         1 MPfMkGr~PiRRTl~YL~qGkvvlkD~V~vfsvnynt~g~~~~GARdFVfwNipQiQykNP~VQ~~~~knmtpsPF~R~Y   80 (169)
T KOG4079|consen    1 MPFMKGRMPIRRTLFYLQQGKVVLKDNVNVFSVNYNTNGPEQSGARDFVFWNIPQIQYKNPKVQLVKHKNMTPSPFARAY   80 (169)
T ss_pred             CCcccCcchHHHHHHHHhcCcEEEeccceEEEEeccCCCccccCccceEEecchhhcccCCceEEEeeccCCCChHHHhe
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             eeCCcEEEEEcCCCCHhHHHHHHHHHhCCChHHHHHHHHHHhhhcCCCCCCCCCCceeeeecCCCCCCCcCccCCCCccC
Q psy8579          81 LENGSEMLIDVDNKSKDEIHDHVLKVLGKSEQVLKAEAIAREKKDNPANFGFKCEKHCICQIPGQITCPGLVRLPDSMRG  160 (168)
Q Consensus        81 ~~~G~~~~Idv~nk~~~eIl~~l~~l~g~s~~~l~~e~~~~~~~~nPa~fG~~~~~~c~ce~~gq~pc~~~~~~p~~~~~  160 (168)
                      ++||+++.+|+++++.+||+++|.+++|+++++++.|+++++.++||||||.+|+|+|||||+|||||||+||||++|||
T Consensus        81 lddGr~vL~Dld~~~r~eI~~hl~K~lGKtee~lr~Ee~ek~~k~nPAnFG~~c~R~CiCEv~GQvPCpglvplP~~mrG  160 (169)
T KOG4079|consen   81 LDDGREVLFDLDGMKREEIEKHLAKTLGKTEEVLRREELEKIAKLNPANFGSKCERQCICEVQGQVPCPGLVPLPQCMRG  160 (169)
T ss_pred             ecCcceEEEEcccccHHHHHHHHHHHhCccHHHHhHHHHHHHhhcChhhhcccccceEEEecCCcCCCCccccCchHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCC
Q psy8579         161 KKVNP  165 (168)
Q Consensus       161 k~~~~  165 (168)
                      ||+.+
T Consensus       161 Ky~~a  165 (169)
T KOG4079|consen  161 KYRWA  165 (169)
T ss_pred             eeecc
Confidence            99875

>KOG3445|consensus

Probab=99.88  E-value=6.4e-23  Score=157.76  Aligned_cols=118  Identities=22%  Similarity=0.310  Sum_probs=102.9

Q ss_pred             HHHHHHHhccCccccCCceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEEEEE
Q psy8579          11 RRTLKYLNAGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLID   90 (168)
Q Consensus        11 ~rtl~yL~~g~~~l~~~Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~~Id   90 (168)
                      +++.-|=..|+++.+  +++|++.||+||+||.|+|+|+...|+.|+..||+|+|.+....+.||.++++|.||+++.|+
T Consensus         8 ~~Si~~NGlgryv~q--l~rit~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~rrg~hP~lraeY~NGre~vic   85 (145)
T KOG3445|consen    8 RASILHNGLGRYVWQ--LRRITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEPRRGQHPLLRAEYLNGRERVIC   85 (145)
T ss_pred             cccccccchhhhhhe--eeEEEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEeccCCCCceEEEEecCCceEEEe
Confidence            344444455555554  899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHhHHHHHHHHHhCCChHHHHHHHHHH-hhhcCCCCCCC
Q psy8579          91 VDNKSKDEIHDHVLKVLGKSEQVLKAEAIAR-EKKDNPANFGF  132 (168)
Q Consensus        91 v~nk~~~eIl~~l~~l~g~s~~~l~~e~~~~-~~~~nPa~fG~  132 (168)
                      ++|++.|||.+.+..+...++.  +...+.+ .+++|||++|.
T Consensus        86 vrnms~eevs~~~~lL~ds~Gl--~v~~lr~~~~t~nPSvqG~  126 (145)
T KOG3445|consen   86 VRNMSQEEVSKKATLLRDSSGL--KVVKLRKRVETLNPSVQGQ  126 (145)
T ss_pred             eccCCHHHHHHHHHHHhccCCC--cceEecccccccCCccccc
Confidence            9999999999999999888874  3333444 78899999996

>KOG3446|consensus

Probab=99.76  E-value=4.4e-19  Score=127.15  Aligned_cols=90  Identities=20%  Similarity=0.254  Sum_probs=84.8

Q ss_pred             ccCccccCCceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEEEEEcCCCCHhH
Q psy8579          19 AGRIVFKDKIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDE   98 (168)
Q Consensus        19 ~g~~~l~~~Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~~Idv~nk~~~e   98 (168)
                      ++...+...+++|+|+.|+.|+.|.|+|+|+...|+.||..||+++|+++++.+..|.+++.|++|.|+.+.++|.+.++
T Consensus         6 sr~~s~~~~lkElRI~lcqkspaSagvR~fvEk~Y~~lKkaNP~lPILIREcSgVqPrl~ARY~~G~E~~v~L~~~s~~~   85 (97)
T KOG3446|consen    6 SRLASFTLKLKELRIHLCQKSPASAGVREFVEKFYVNLKKANPDLPILIRECSGVQPRLWARYGNGVERSVSLANLSAPQ   85 (97)
T ss_pred             hcccccchhhhhheeeecCCCCcchhHHHHHHHhhhhhhhcCCCCcEeehhhcCCchHHHHHhcCCceEEeehhhcchHH
Confidence            34567778899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q psy8579          99 IHDHVLKVLG  108 (168)
Q Consensus        99 Il~~l~~l~g  108 (168)
                      |.+.|.++..
T Consensus        86 i~kale~l~k   95 (97)
T KOG3446|consen   86 IHKALENLGK   95 (97)
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25

Probab=99.70  E-value=3.1e-17  Score=106.81  Aligned_cols=52  Identities=37%  Similarity=0.591  Sum_probs=39.3

Q ss_pred             HHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEEEEEcCCCCH
Q psy8579          45 AKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSK   96 (168)
Q Consensus        45 aR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~~Idv~nk~~   96 (168)
                      ||+||+++||+||++||+|+|++.++.+.+|++.++|.+|++++|||+|+++
T Consensus         1 ~R~F~~~~lp~l~~~NP~v~~~v~~~~~~~P~~~~~y~~G~~~~i~~~n~~~   52 (52)
T PF05047_consen    1 ARDFLKNNLPTLKYHNPQVQFEVRRRRGRHPFLTAEYLNGREKTIDVKNKSS   52 (52)
T ss_dssp             HHHHHHHTHHHHHHHSTT--EEEE---SSS-EEEEEESS--EEEEE-TT---
T ss_pred             CHhHHHHhHHHHHHHCCCcEEEEEECCCCCCEEEEEEcCCCEEEEECCCCCC
Confidence            7999999999999999999999999999999999999999999999999975

This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.

>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []

Probab=92.45  E-value=0.23  Score=35.03  Aligned_cols=61  Identities=21%  Similarity=0.329  Sum_probs=41.1

Q ss_pred             CChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcE-EEEEcCCCCHhHHHHHHHHH
Q psy8579          41 NHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSE-MLIDVDNKSKDEIHDHVLKV  106 (168)
Q Consensus        41 ~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~-~~Idv~nk~~~eIl~~l~~l  106 (168)
                      .--.+..|+++..| =+|  |+|.|......  .|.|.++=++|++ .+|++++.+.++|.+-|.+.
T Consensus        14 ~~Pevk~Fi~~~~~-~~y--~~v~vk~i~G~--~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~k   75 (78)
T PF08806_consen   14 RYPEVKAFIKSDVP-PLY--PNVEVKYIPGA--PPELVLLDEDGEEVERINIEKWKTDEIEEFLNEK   75 (78)
T ss_dssp             TTCCHHHHCCCCCG-HHB--TTEEEEEESS-----EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHH
T ss_pred             cChHHHHHHhccch-hcc--CceEEEEeCCC--CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHh
Confidence            34567899998882 222  67777655443  5899988888886 49999999999999988764

This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.

>PF10780 MRP_L53: 39S ribosomal protein L53/MRP-L53; InterPro: IPR019716 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=91.83  E-value=0.3  Score=31.84  Aligned_cols=49  Identities=18%  Similarity=0.211  Sum_probs=38.6

Q ss_pred             ecCCCCCChhHHHHHHhc--hHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCC
Q psy8579          35 YNFNAENHRGAKEFVFWH--FTQIQFKNPNVQLQVFKNMTPTPFITTYLENG   84 (168)
Q Consensus        35 y~~~~~~s~GaR~Fv~~~--LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G   84 (168)
                      ||..+..++-||.|+..-  =++.+--||+.+++.... ...|.+.+-|.||
T Consensus         1 FnPF~~~aksaR~FL~~ip~s~k~~~tni~~~vl~~~~-~~~P~v~V~fkdg   51 (51)
T PF10780_consen    1 FNPFSPNAKSARLFLSLIPPSAKARGTNINCEVLPRVS-RSEPSVTVTFKDG   51 (51)
T ss_pred             CCCCCcccHHHHHHHHhcCCccccccCCCceEEecCCC-CCCCeEEEEeccC
Confidence            566777899999999754  345667899999977666 5689999999887

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Mitochondrial ribosomal protein L53 (also known as L44) is part of the 39S ribosome [].

>PF14847 Ras_bdg_2: Ras-binding domain of Byr2; PDB: 1I35_A 1K8R_B

Probab=84.27  E-value=2.1  Score=31.91  Aligned_cols=35  Identities=37%  Similarity=0.499  Sum_probs=27.9

Q ss_pred             EEEEeeCCcEEEEEcCC-CCHhHHHHHHHHHhCCCh
Q psy8579          77 ITTYLENGSEMLIDVDN-KSKDEIHDHVLKVLGKSE  111 (168)
Q Consensus        77 l~~~~~~G~~~~Idv~n-k~~~eIl~~l~~l~g~s~  111 (168)
                      +++.++||..++|||.+ .+++||+..+.+.+|..+
T Consensus         3 i~~I~~dG~tk~VNV~~c~~a~eI~~rvLKKfg~~~   38 (105)
T PF14847_consen    3 IRFILEDGSTKTVNVSGCFNAQEIKRRVLKKFGLPE   38 (105)
T ss_dssp             EEEEETTTEEEEEE--S--HHHHHHHHHHHHHTSS-
T ss_pred             EEEECCCCcEEEEEECCCCCHHHHHHHHHHHcCCcc
Confidence            56778999999999999 678999999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
1s3a_A	102	NADH-ubiquinone oxidoreductase B8 subunit; CI-B8,	3e-05

>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22 Length = 102

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 12/68 (17%), Positives = 32/68 (47%)

Query: 43  RGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDH 102
           +G ++F+   + +++  NP++ + + +     P +      G E  + ++N S D++   
Sbjct: 34  QGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRA 93

Query: 103 VLKVLGKS 110
           +  VL   
Sbjct: 94  LENVLSGK 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1s3a_A	102	NADH-ubiquinone oxidoreductase B8 subunit; CI-B8,	99.95
2a2p_A	129	Selenoprotein M, SELM protein; redox enzyme, oxido	92.35
2a4h_A	126	Selenoprotein SEP15; redox, oxidoreductase; NMR {D	85.95

>1s3a_A NADH-ubiquinone oxidoreductase B8 subunit; CI-B8, ndufa2, complex I; NMR {Homo sapiens} SCOP: c.47.1.22

Probab=99.95  E-value=2e-28  Score=179.49  Aligned_cols=92  Identities=16%  Similarity=0.256  Sum_probs=80.3

Q ss_pred             ccCccccCC--ceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEEEEEcCCCCH
Q psy8579          19 AGRIVFKDK--IKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSK   96 (168)
Q Consensus        19 ~g~~~l~~~--Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~~Idv~nk~~   96 (168)
                      +|++.|+++  |++|+|+||+++++|.|+|+||+++||+||++||+|+|+++++.+.+|++.++|+||+++.||++|++.
T Consensus         8 ~~~~~l~~~~qlk~l~~~yc~~~~sS~G~R~Fl~~~l~~~k~~NP~v~i~v~~~~~~~P~i~a~Y~~G~ek~i~l~n~s~   87 (102)
T 1s3a_A            8 AASRGVGAKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSA   87 (102)
T ss_dssp             ----------CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSCCEEEEECTTCCH
T ss_pred             hhhhcCCCCCceeEEEEEEcCCCCCchhHHHHHHHhhHHHHHHCCCceEEEEECCCCCCEEEEEECCCCEEEEECCCCCH
Confidence            589999999  999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhCCC
Q psy8579          97 DEIHDHVLKVLGKS  110 (168)
Q Consensus        97 ~eIl~~l~~l~g~s  110 (168)
                      +||+++|..++.++
T Consensus        88 ~eI~~~l~~l~~~~  101 (102)
T 1s3a_A           88 DQVTRALENVLSGK  101 (102)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcc
Confidence            99999999987643

>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23

Probab=92.35  E-value=0.68  Score=34.74  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=56.2

Q ss_pred             CCceEEEEEecCCC--CCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEE-EEEcCCCCHhHHHHH
Q psy8579          26 DKIKIFAINYNFNA--ENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEM-LIDVDNKSKDEIHDH  102 (168)
Q Consensus        26 ~~Vk~l~l~y~~~~--~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~-~Idv~nk~~~eIl~~  102 (168)
                      ..+.+..|.-|...  +.--.+..||++..|.  |  |+|.|....  +..|.|.++=++|+++ +|++++.+.++|.+-
T Consensus        12 ~~yarA~lEvC~~CkL~~~PeIk~FIk~d~~~--y--~~v~Vkyi~--Ga~P~LvL~D~~G~e~E~I~Iekw~~d~I~ef   85 (129)
T 2a2p_A           12 RGLARGRVETCGGCQLNRLKEVKAFVTEDIQL--Y--HNLVMKHLP--GADPELVLLSRNYQELERIPLSQMTRDEINAL   85 (129)
T ss_dssp             TTCCEEEEEEETTCCCSTTHHHHHHTTTHHHH--B--TTEEEEEES--SCCCEEEEECSSSCCCEEEECSSSCHHHHHHH
T ss_pred             cccceEEEEECCCcccccchhHHHHHhCchhh--c--CceeEEEeC--CCCCEEEEecCCCCEEEEeecccCCHHHHHHH
Confidence            34566777777322  2366799999998886  4  667765544  4468999888888864 999999999999998


Q ss_pred             HHHH
Q psy8579         103 VLKV  106 (168)
Q Consensus       103 l~~l  106 (168)
                      |.+.
T Consensus        86 L~e~   89 (129)
T 2a2p_A           86 VQEL   89 (129)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8764

>2a4h_A Selenoprotein SEP15; redox, oxidoreductase; NMR {Drosophila melanogaster} SCOP: c.47.1.23

Probab=85.95  E-value=0.94  Score=33.85  Aligned_cols=80  Identities=11%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             CceEEEEEecCCCCC-ChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcE-EEEEcCCCCHhHHHHHHH
Q psy8579          27 KIKIFAINYNFNAEN-HRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSE-MLIDVDNKSKDEIHDHVL  104 (168)
Q Consensus        27 ~Vk~l~l~y~~~~~~-s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~-~~Idv~nk~~~eIl~~l~  104 (168)
                      .+.+-.|..|...=+ ---+..||....|..   -|+|.|...  .+..|.|..+=++|++ .+|++++.+.++|.+-|.
T Consensus        19 ~Ya~A~LEvC~CKL~~yPeVk~FI~~d~~~~---fpnL~vkyv--~Ga~P~LvLlD~~Ge~~E~I~IekW~tD~I~efL~   93 (126)
T 2a4h_A           19 TYAKAILEVCTCKFRAYPQIQAFIQSGRPAK---FPNLQIKYV--RGLDPVVKLLDASGKVQETLSITKWNTDTVEEFFE   93 (126)
T ss_dssp             CCSCBEEECCSCTTTTCTTHHHHHHHTTGGG---CTTBCCCCC--SSCCCEEEECCSSSCCSEEEECSSSSCSHHHHHHH
T ss_pred             ccCceEEEEcchhhhcCHHHHHHHccchhhh---CCceEEEEe--cCCCCEEEEecCCCCEeeEeccccCCHHHHHHHHH
Confidence            367777887854422 556799999877653   345555443  3446888877788885 599999999999999998


Q ss_pred             HHhCCCh
Q psy8579         105 KVLGKSE  111 (168)
Q Consensus       105 ~l~g~s~  111 (168)
                      +-+....
T Consensus        94 ekL~~~~  100 (126)
T 2a4h_A           94 THLAKDG  100 (126)
T ss_dssp             HHSCCCC
T ss_pred             HHhhhhc
Confidence            8876644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1s3aa1	85	c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase	2e-19

>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Mitochondrial ribosomal protein L51/S25/CI-B8 domain
domain: NADH-ubiquinone oxidoreductase b8 subunit, CI-B8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.5 bits (186), Expect = 2e-19
 Identities = 13/78 (16%), Positives = 35/78 (44%)

Query: 33  INYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVD 92
           I+    +   +G ++F+   + +++  NP++ + + +     P +      G E  + ++
Sbjct: 7   IHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLN 66

Query: 93  NKSKDEIHDHVLKVLGKS 110
           N S D++   +  VL   
Sbjct: 67  NFSADQVTRALENVLSGK 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1s3aa1	85	NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {	99.94
d2a2pa1	120	Selenoprotein M {Mouse (Mus musculus) [TaxId: 1009	95.39
d2a4ha1	117	Selenoprotein sep15 {Drosophila melanogaster [TaxI	89.14

>d1s3aa1 c.47.1.22 (A:15-99) NADH-ubiquinone oxidoreductase b8 subunit, CI-B8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Mitochondrial ribosomal protein L51/S25/CI-B8 domain
domain: NADH-ubiquinone oxidoreductase b8 subunit, CI-B8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-27  Score=166.14  Aligned_cols=84  Identities=15%  Similarity=0.281  Sum_probs=80.8

Q ss_pred             CceEEEEEecCCCCCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEEEEEcCCCCHhHHHHHHHHH
Q psy8579          27 KIKIFAINYNFNAENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEMLIDVDNKSKDEIHDHVLKV  106 (168)
Q Consensus        27 ~Vk~l~l~y~~~~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~~Idv~nk~~~eIl~~l~~l  106 (168)
                      .||+|+|+||+++++|.|+|+|+.++||+||++||+|+|.++++.+++|+++++|+||+++.||++|++++||+++|..+
T Consensus         1 ~Lk~l~~~yc~~~~sS~G~R~Fi~~~l~~~~~~NP~v~i~v~~~~~~~P~l~a~y~nG~e~~i~l~n~~~~eI~~~l~~L   80 (85)
T d1s3aa1           1 GLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQETNVPLNNFSADQVTRALENV   80 (85)
T ss_dssp             CEEEEEEECCSSSCCCHHHHHHHHHTHHHHHHHSTTCCEEEECCCSSSCEEEEEESSCCEEEEECTTCCHHHHHHHHHHH
T ss_pred             CceEEEEEEcCCCCCcHHHHHHHHHhHHHHHHHCCCceEEEEEcCCCCCEEEEEEcCCcEEEEECCCCCHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hCCC
Q psy8579         107 LGKS  110 (168)
Q Consensus       107 ~g~s  110 (168)
                      ++.+
T Consensus        81 ~~~~   84 (85)
T d1s3aa1          81 LSGK   84 (85)
T ss_dssp             HHHT
T ss_pred             HcCC
Confidence            7643

>d2a2pa1 c.47.1.23 (A:25-144) Selenoprotein M {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Selenoprotein M
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.39  E-value=0.039  Score=39.33  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=58.0

Q ss_pred             CCceEEEEEecCC--CCCChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEE-EEEcCCCCHhHHHHH
Q psy8579          26 DKIKIFAINYNFN--AENHRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEM-LIDVDNKSKDEIHDH  102 (168)
Q Consensus        26 ~~Vk~l~l~y~~~--~~~s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~-~Idv~nk~~~eIl~~  102 (168)
                      ..+.+-.|.-|..  -+.--.+..|+.+.+|  .|+|  |.|..  ..+..|.|.+|=++|+++ +|+|++++.++|.+-
T Consensus        11 ~~~~rA~lE~C~gCkL~~~PeVkaFI~ed~p--~ypn--l~vKy--v~Ga~P~LvL~D~~ge~vE~i~Iekw~~deI~~~   84 (120)
T d2a2pa1          11 RGLARGRVETCGGCQLNRLKEVKAFVTEDIQ--LYHN--LVMKH--LPGADPELVLLSRNYQELERIPLSQMTRDEINAL   84 (120)
T ss_dssp             TTCCEEEEEEETTCCCSTTHHHHHHTTTHHH--HBTT--EEEEE--ESSCCCEEEEECSSSCCCEEEECSSSCHHHHHHH
T ss_pred             hhcceeEEEeCCCcccccCHHHHHHHHhhhh--hCCc--eEEEe--cCCCCCEEEEecCCCCEEEEEecccCCHHHHHHH
Confidence            3567777888863  2447789999999999  4654  55554  345578999988888875 999999999999999


Q ss_pred             HHHH
Q psy8579         103 VLKV  106 (168)
Q Consensus       103 l~~l  106 (168)
                      |.+.
T Consensus        85 L~Ek   88 (120)
T d2a2pa1          85 VQEL   88 (120)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            8775

>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila melanogaster [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Selenoprotein W-related
domain: Selenoprotein sep15
species: Drosophila melanogaster [TaxId: 7227]

Probab=89.14  E-value=0.11  Score=36.71  Aligned_cols=64  Identities=16%  Similarity=0.226  Sum_probs=49.5

Q ss_pred             ChhHHHHHHhchHHHHHhCCCCeEEEEeCCCCCCeEEEEeeCCcEE-EEEcCCCCHhHHHHHHHHHhCCC
Q psy8579          42 HRGAKEFVFWHFTQIQFKNPNVQLQVFKNMTPTPFITTYLENGSEM-LIDVDNKSKDEIHDHVLKVLGKS  110 (168)
Q Consensus        42 s~GaR~Fv~~~LP~Lky~NP~V~i~~~k~~~~~P~l~~~~~~G~~~-~Idv~nk~~~eIl~~l~~l~g~s  110 (168)
                      =-=+..||....|.+ |  |+|.|...  .+..|.|..+=++|+++ +++|++.+.++|.+-|.+-+.++
T Consensus        26 ~Pevk~FI~~d~p~~-f--pnl~vkyv--~Ga~P~L~L~D~~g~~~E~l~I~kw~~D~i~efL~~~l~~~   90 (117)
T d2a4ha1          26 YPQIQAFIQSGRPAK-F--PNLQIKYV--RGLDPVVKLLDASGKVQETLSITKWNTDTVEEFFETHLAKD   90 (117)
T ss_dssp             CTTHHHHHHHTTGGG-C--TTBCCCCC--SSCCCEEEECCSSSCCSEEEECSSSSCSHHHHHHHHHSCCC
T ss_pred             CHHHHHHHhcchhhh-C--CCceEEEe--cCCCCEEEEEcCCCCEEEEEecccCCHHHHHHHHHHHHhhh
Confidence            344678999887753 2  66776554  34468999888888876 99999999999999999887664