Psyllid ID: psy8662

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260
Protein Sequence
MLSGEPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA
Secondary Structure (PSIPRED)
ccccccccccccccccEEEcccEEEEcccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEccccccccccEEEEEEEcccccccccEEccEEEEEccccccccccEEEcccccccccccEEEEEccccccccccccccEEEEEEEccHHHHHHccccccccccEEEEccccccccccccccccEEEEEcccEEEEEEEEEEccccccccccEEEEEccccHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccHccccccccccccccEEcccEcccccccEEEEEEEcccEEcccEEEccEEEEEEcccccccccEEEccccccccccEEEEEEccEccccccEccEcEEEEEEEccHHHHHHHcccccccccEEEEcccccccEccccccccEEEEEEccEEEEEEEEEEccccccccccEEEEEHHHcHHHHHcHcHcc
Coil and Loop (DISEMBL)
mlsgeplddvqhdevpevlddgisvvpgpmpvaaphgfqdYTSWFQELISGFvtnqeestppepvkpvdlekcgpctcgavnkktrivggqvtyvhQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIrgksfsnktgivtgwgvqkqggstsdtlLEVEvpilsnaeckktayenritpnmlcagypkgekdscqgdsggplhyaneTVHHIVGVvswgegcaqenypgVYARVNRYLTWIKNNTIDA
Flexible Loop (DISEMBL)
mlsgeplddvqhDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVtnqeestppepvkpvdlekcGPCTCGavnkktrivgGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGwgvqkqggstsdTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA
Low Complexity Region (SEG)
MLSGEPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA
Disordered region (IsUnstruct)
********************DGISVVPGPMPVAAPHGFQDYTSWFQELISGFVT*************VDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYP************GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN****
Disordered Region (DISOPRED)
*****P**DVQHDEVPEVLDDGISVVPGP*******GFQDYTSWFQELISGFV*****************EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT***
Disordered Region (DISEMBL)
********DVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTN**********KPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA
Disordered Region (DISPRO)
***************P*VLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSGEPLDDVQHDEVPEVLDDGISVVPGPMPVAAPHGFQDYTSWFQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	260	2.2.26 [Sep-21-2011]
Q5S248	423	Transmembrane protease se	yes	N/A	0.688	0.423	0.344	2e-28
Q9ER04	455	Transmembrane protease se	no	N/A	0.688	0.393	0.345	4e-28
Q9H3S3	457	Transmembrane protease se	yes	N/A	0.703	0.400	0.327	3e-27
P00765	237	Trypsin-1 OS=Astacus fluv	N/A	N/A	0.388	0.426	0.504	3e-27
Q2KJ63	636	Plasma kallikrein OS=Bos	no	N/A	0.423	0.172	0.472	5e-27
Q14C59	416	Transmembrane protease se	no	N/A	0.819	0.512	0.293	2e-26
Q8BHM9	439	Transmembrane protease se	no	N/A	0.684	0.405	0.340	8e-26
Q5NTB3	625	Coagulation factor XI OS=	no	N/A	0.4	0.166	0.495	1e-25
O18783	806	Plasminogen OS=Macropus e	N/A	N/A	0.642	0.207	0.340	2e-25
Q6IE14	420	Transmembrane protease se	no	N/A	0.8	0.495	0.306	2e-25

>sp|Q5S248|TM11E_MOUSE Transmembrane protease serine 11E OS=Mus musculus GN=Tmprss11e PE=1 SV=2

 Score =  126 bits (316), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/238 (34%), Positives = 108/238 (45%), Gaps = 59/238 (24%)

Query: 79  GAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV--HQGLGIW 136
             V    RIVGG      ++PW + L +     CGATLINN +++TAAHC   H+    W
Sbjct: 184 STVQTSVRIVGGTPVEEEEWPWQSSLRWDGSHRCGATLINNTWLVTAAHCFRTHKDPSRW 243

Query: 137 VTIRGKSFSNK---TGI------------------------------------------- 150
               G +   +   TGI                                           
Sbjct: 244 SATFGATLQPRKLTTGIRRIIVHEKYKYPSHDYDIALAELSKPVPCTNAVHKVCLPDANH 303

Query: 151 ---------VTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRITPNMLCAGYPK 200
                    VTG+G  K  G T + L +V+V  +    C +  +Y   ITP MLCAG+ K
Sbjct: 304 EFQPGQRMFVTGFGALKNDGFTQNNLRQVQVDYIDTQTCNQPQSYNGAITPRMLCAGFLK 363

Query: 201 GEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GEKD+CQGDSGGPL  A+   + ++ GVVSWG+ C Q N PGVY RV  +  WI +NT
Sbjct: 364 GEKDACQGDSGGPLVTADVRDIWYLAGVVSWGDECGQPNKPGVYTRVTAFRHWIASNT 421

Serine protease which possesses both gelatinolytic and caseinolytic activities. Shows a preference for Arg in the P1 position.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: -

>sp|Q9ER04|TMPS5_MOUSE Transmembrane protease serine 5 OS=Mus musculus GN=Tmprss5 PE=2 SV=3

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 84/243 (34%), Positives = 109/243 (44%), Gaps = 64/243 (26%)

Query: 78  CGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC--------- 128
           CGA    +RIVGGQ     ++PW A +M   R  CGA+++   +V+TAAHC         
Sbjct: 209 CGARPLASRIVGGQAVASGRWPWQASVMLGSRHTCGASVLAPHWVVTAAHCMYSFRLSRL 268

Query: 129 ----VHQGLGIWVTIRGK--------------------------------SFSNKTGIV- 151
               VH GL     +R                                  +FS+  G V 
Sbjct: 269 SSWRVHAGLVSHGAVRQHQGTMVEKIIPHPLYSAQNHDYDVALLQLRTPINFSDTVGAVC 328

Query: 152 ----------------TGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTA-YENRITPNM 193
                           +GWG        +SDTL +  VP+LS   C  +  Y   +T  M
Sbjct: 329 LPAKEQHFPWGSQCWVSGWGHTDPSHTHSSDTLQDTMVPLLSTYLCNSSCMYSGALTHRM 388

Query: 194 LCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           LCAGY  G  D+CQGDSGGPL   +    H+VGVVSWG GCA+ N PGVYA+V  +L WI
Sbjct: 389 LCAGYLDGRADACQGDSGGPLVCPSGDTWHLVGVVSWGRGCAEPNRPGVYAKVAEFLDWI 448

Query: 254 KNN 256
            + 
Sbjct: 449 HDT 451

May play a role in hearing.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q9H3S3|TMPS5_HUMAN Transmembrane protease serine 5 OS=Homo sapiens GN=TMPRSS5 PE=1 SV=2

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/247 (32%), Positives = 108/247 (43%), Gaps = 64/247 (25%)

Query: 78  CGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC--------- 128
           CGA    +RIVGGQ     ++PW A +    R  CG +++   +V+TAAHC         
Sbjct: 209 CGARPLASRIVGGQSVAPGRWPWQASVALGFRHTCGGSVLAPRWVVTAAHCMHSFRLARL 268

Query: 129 ----VHQGLGIWVTIR--------------------------------GKSFSNKTGIV- 151
               VH GL     +R                                  +FS+  G V 
Sbjct: 269 SSWRVHAGLVSHSAVRPHQGALVERIIPHPLYSAQNHDYDVALLRLQTALNFSDTVGAVC 328

Query: 152 ----------------TGWG-VQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNM 193
                           +GWG        +SD L +  VP+ S   C  +  Y   +TP M
Sbjct: 329 LPAKEQHFPKGSRCWVSGWGHTHPSHTYSSDMLQDTVVPLFSTQLCNSSCVYSGALTPRM 388

Query: 194 LCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           LCAGY  G  D+CQGDSGGPL   +     +VGVVSWG GCA+ N+PGVYA+V  +L WI
Sbjct: 389 LCAGYLDGRADACQGDSGGPLVCPDGDTWRLVGVVSWGRGCAEPNHPGVYAKVAEFLDWI 448

Query: 254 KNNTIDA 260
            +   D+
Sbjct: 449 HDTAQDS 455

May play a role in hearing.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P00765|TRYP_ASTFL Trypsin-1 OS=Astacus fluviatilis PE=1 SV=1

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 76/109 (69%)

Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           IVTGWG   +GG+T D L +V VP++S+AEC+     + I  +M+CAG P+G KDSCQGD
Sbjct: 129 IVTGWGTTSEGGNTPDVLQKVTVPLVSDAECRDDYGADEIFDSMICAGVPEGGKDSCQGD 188

Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI 258
           SGGPL  ++    ++ G+VSWG GCA+  YPGVY  V+ ++ WIK N +
Sbjct: 189 SGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANAV 237

Astacus fluviatilis (taxid: 6715)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 4

>sp|Q2KJ63|KLKB1_BOVIN Plasma kallikrein OS=Bos taurus GN=KLKB1 PE=2 SV=1

 Score =  121 bits (304), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 52/110 (47%), Positives = 75/110 (68%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           +TGWG  ++ G   +TL +  +P++SN EC+K+  + +IT  M+CAGY +G KD+C+GDS
Sbjct: 520 ITGWGFTEEKGKIQNTLQKANIPLISNEECQKSYRDYKITKQMICAGYKEGGKDACKGDS 579

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA 260
           GGPL   +E   H+VG+ SWGEGCA+   PGVY +V  Y+ WI   T D+
Sbjct: 580 GGPLVCQHEETWHLVGITSWGEGCARREQPGVYTKVAEYVDWILEKTQDS 629

The enzyme cleaves Lys-Arg and Arg-Ser bonds. It activates, in a reciprocal reaction, factor XII after its binding to a negatively charged surface. It also releases bradykinin from HMW kininogen and may also play a role in the renin-angiotensin system by converting prorenin into renin.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 3

EC: 4

>sp|Q14C59|TM11L_MOUSE Transmembrane protease serine 11B-like protein OS=Mus musculus GN=Tmprss11bnl PE=2 SV=2

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 116/283 (40%), Gaps = 70/283 (24%)

Query: 45  FQELISGFVTNQEESTPPEP-------VKPVDLEKCGPCTCGAVNKKT----RIVGGQVT 93
            + ++   + N  ES   +P       +  VD EK     CG   + +    RI GG   
Sbjct: 132 IESILRQMLENNPESLTTDPGSLKLTEISKVDAEKIINNRCGRRPRMSATYDRITGGSTA 191

Query: 94  YVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV------------------------ 129
           +  ++PW A L    + YCGA+LI   ++LTAAHC                         
Sbjct: 192 HKGEWPWQASLRVNGKHYCGASLIGERFLLTAAHCFQGTNNPKNLTVSFGTRVTPAYMQH 251

Query: 130 ----------------HQGLGIWVTIRGKSFSNKTG-----------------IVTGWGV 156
                           H  + +       SF+N                    +VTGWG 
Sbjct: 252 SVQEIIIHEDYVKGEHHDDVAVIKLTEKVSFNNDVHRVCLPESTQIFPPGEGVVVTGWGS 311

Query: 157 QKQGGSTSDTLLEVEVPILSNAECK-KTAYENRITPNMLCAGYPKGEKDSCQGDSGGPL- 214
               G +   L +  + I+    C  + AY  RI   MLCAGY +G  D+CQGDSGGPL 
Sbjct: 312 FSYNGKSPLLLQKASIKIIDTNTCNSEEAYGGRIVDTMLCAGYLEGSIDACQGDSGGPLV 371

Query: 215 HYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           H  +  + ++VG+VSWG  C + N PGVY RV  Y  WI + T
Sbjct: 372 HPNSRDIWYLVGIVSWGHECGRVNKPGVYMRVTSYRNWIASKT 414

Probable serine protease.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q8BHM9|TM11F_MOUSE Transmembrane protease serine 11F OS=Mus musculus GN=Tmprss11f PE=2 SV=1

 Score =  117 bits (293), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 81/238 (34%), Positives = 113/238 (47%), Gaps = 60/238 (25%)

Query: 80  AVNKKTRIVGGQVTYVH-QYPWMA-LLMYKKRFYCGATLINNLYVLTAAHCV--HQGLGI 135
           A +   RIV G+ T +  ++PW A L +      CGATLI+N ++LTAAHC   ++    
Sbjct: 200 ASSSTERIVQGRETAMEGEWPWQASLQLIGAGHQCGATLISNTWLLTAAHCFWKNRDPTK 259

Query: 136 WVTIRGKS--------------------------------------FSN----------- 146
           W+   G +                                      FSN           
Sbjct: 260 WIVTFGTTITPPLVKRSVGKIIIHEEYHRDTNENDIALAQLTTRVEFSNVVQRVCLPDSS 319

Query: 147 -----KTGI-VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYP 199
                KT + VTG+G     G T + L +  V  + +  C +K  Y+  ITP MLCAG+ 
Sbjct: 320 MKLPPKTSVFVTGFGSIVDDGPTQNKLRQARVETIGSDVCNRKDVYDGLITPGMLCAGFM 379

Query: 200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           +G+ D+C+GDSGGPL Y N  + +IVG+VSWG+ CA  N PGVY RV +Y  WI + T
Sbjct: 380 EGKIDACKGDSGGPLVYDNRDIWYIVGIVSWGQSCALPNKPGVYTRVTKYRDWIASKT 437

Probable serine protease.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q5NTB3|FA11_BOVIN Coagulation factor XI OS=Bos taurus GN=F11 PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 53/107 (49%), Positives = 71/107 (66%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + +VP+++N EC+    E+RIT  M+CAGY +G KD+C+GDS
Sbjct: 516 VTGWGYRKLRDKIQNTLQKAKVPLMTNEECQAGYREHRITSKMVCAGYREGGKDACKGDS 575

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGC Q   PGVY+ V  Y+ WI   T
Sbjct: 576 GGPLSCKHNEVWHLVGITSWGEGCGQRERPGVYSNVVEYVDWILEKT 622

Factor XI triggers the middle phase of the intrinsic pathway of blood coagulation by activating factor IX.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 2

EC: 7

>sp|O18783|PLMN_MACEU Plasminogen OS=Macropus eugenii GN=PLG PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 78/229 (34%), Positives = 106/229 (46%), Gaps = 62/229 (27%)

Query: 86  RIVGGQVTYVHQYPWMALLMYKKRF---YCGATLINNLYVLTAAHCVHQG---------L 133
           RIVGG     H +PW   L  + RF   +CG TLI   +VLTAAHC+ +          L
Sbjct: 576 RIVGGCYAQPHSWPWQISL--RTRFGEHFCGGTLIAPQWVLTAAHCLERSQWPGAYKVIL 633

Query: 134 GIWVTIRGKSFSNKTGI------------------------------------------- 150
           G+   +  +S+S + G+                                           
Sbjct: 634 GLHREVNPESYSQEIGVSRLFKGPLAADIALLKLNRPAAINDKVIPACLPSQDFMVPDRT 693

Query: 151 ---VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSC 206
              VTGWG   QG S    L +  +P++ N  C +  Y N R+    LCAG+  G  DSC
Sbjct: 694 LCHVTGWG-DTQGTSPRGLLKQASLPVIDNRVCNRHEYLNGRVKSTELCAGHLVGRGDSC 752

Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           QGDSGGPL    +  + + GV SWG GCA+ N PGVY RV+RY++WI++
Sbjct: 753 QGDSGGPLICFEDDKYVLQGVTSWGLGCARPNKPGVYVRVSRYISWIED 801

Plasmin dissolves the fibrin of blood clots and acts as a proteolytic factor in a variety of other processes including embryonic development, tissue remodeling, tumor invasion, and inflammation. In ovulation, weakens the walls of the Graafian follicle. It activates the urokinase-type plasminogen activator, collagenases and several complement zymogens, such as C1 and C5. Cleavage of fibronectin and laminin leads to cell detachment and apoptosis. Also cleaves fibrin, thrombospondin and von Willebrand factor. Its role in tissue remodeling and tumor invasion may be modulated by CSPG4. Binds to cells.

Macropus eugenii (taxid: 9315)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

>sp|Q6IE14|TM11L_RAT Transmembrane protease serine 11B-like protein OS=Rattus norvegicus GN=Tmprss11bnl PE=2 SV=1

 Score =  115 bits (289), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/271 (30%), Positives = 110/271 (40%), Gaps = 63/271 (23%)

Query: 50  SGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKT----RIVGGQVTYVHQYPWMALLM 105
           SG +T    S     +  VD EK     CG   + +    RI GG      ++PW A L 
Sbjct: 148 SGSLTTDPGSLKLTEITKVDAEKIINNRCGRRPRMSATYDRITGGSTAQKGEWPWQASLR 207

Query: 106 YKKRFYCGATLINNLYVLTAAHCV------------------------------------ 129
              + +CGA+LI   ++LTAAHC                                     
Sbjct: 208 VNGKHHCGASLIGERFLLTAAHCFLRTNNPKNLTVSFGTRVTPAYMQHYVEEVIIHEDYV 267

Query: 130 ----HQGLGIWVTIRGKSFSNKTG-----------------IVTGWGVQKQGGSTSDTLL 168
               H  + I       SF N                    +VTGWG     G +   L 
Sbjct: 268 KGQHHDDVAIIKLTEKVSFRNDVHRVCLPEATQVFPPGEGVVVTGWGSLSYNGKSPLLLQ 327

Query: 169 EVEVPILSNAECK-KTAYENRITPNMLCAGYPKGEKDSCQGDSGGPL-HYANETVHHIVG 226
           +  + I+    C  + AY  RI   MLCAGY +G  D+CQGDSGGPL H  +  + ++VG
Sbjct: 328 KASIKIIDTNACNSEEAYGGRIMDTMLCAGYMEGYVDACQGDSGGPLVHPNSRDIWYLVG 387

Query: 227 VVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           +VSWG  C + N PGVY RV  Y  WI + T
Sbjct: 388 IVSWGHECGRVNKPGVYMRVTSYRDWIASKT 418

Probable serine protease.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
332019467	324	Coagulation factor XI [Acromyrmex echina	0.815	0.654	0.465	3e-57
307180767	334	Trypsin-1 [Camponotus floridanus]	0.765	0.595	0.449	5e-54
195431800	366	GK15652 [Drosophila willistoni] gi|19416	0.730	0.519	0.470	7e-53
195486357	378	GE13675 [Drosophila yakuba] gi|194177575	0.730	0.502	0.454	8e-52
19922714	372	CG4386 [Drosophila melanogaster] gi|1072	0.730	0.510	0.450	1e-51
194882026	372	GG20743 [Drosophila erecta] gi|190658301	0.730	0.510	0.450	1e-51
195346561	372	GM15686 [Drosophila sechellia] gi|194135	0.730	0.510	0.450	1e-51
195585556	372	GD25165 [Drosophila simulans] gi|1941945	0.730	0.510	0.450	1e-51
194755970	379	GF11616 [Drosophila ananassae] gi|190621	0.730	0.501	0.450	1e-51
195154348	377	GL17516 [Drosophila persimilis] gi|19411	0.730	0.503	0.450	2e-51

>gi|332019467|gb|EGI59947.1| Coagulation factor XI [Acromyrmex echinatior]

 Score =  227 bits (579), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/277 (46%), Positives = 153/277 (55%), Gaps = 65/277 (23%)

Query: 45  FQELISGFVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALL 104
           F E + G VT      PP  ++    E+C  CTCG  NK  RIVGG  T V+QYPWM LL
Sbjct: 49  FWEWLLGSVT----LYPPTNIELQQPEECLKCTCGLTNKHNRIVGGVETLVNQYPWMVLL 104

Query: 105 MYKKRFYCGATLINNLYVLTAAHCVH------------------------QGLGIWVTIR 140
           +Y+ +FYCG T+IN+ +VLTAAHC+                         Q   I   IR
Sbjct: 105 LYRGQFYCGGTIINSRHVLTAAHCIDRFDVNKLIARILEHDWNSTDESKTQDFQIERAIR 164

Query: 141 GKSFSN------------------------------------KTGIVTGWGVQKQGGSTS 164
             S+S                                     K GI+TGWG  K+GG  S
Sbjct: 165 HPSYSTINYDNDIALLKLKDAIKFQDSMRPACLPEKVKTFAGKKGIITGWGAIKEGGQVS 224

Query: 165 DTLLEVEVPILSNAECKKTAY-ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHH 223
            TL EV +PILSNAEC+ T Y  +RIT NM+CAG+ +G KDSCQGDSGGPLH     VH 
Sbjct: 225 HTLQEVFIPILSNAECRATKYPAHRITDNMMCAGFKEGGKDSCQGDSGGPLHIEENGVHQ 284

Query: 224 IVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA 260
           +VGVVSWGEGCAQ  YPGVYARVNRYLTWI++NT D 
Sbjct: 285 VVGVVSWGEGCAQSGYPGVYARVNRYLTWIRHNTNDG 321

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307180767|gb|EFN68636.1| Trypsin-1 [Camponotus floridanus]

 Score =  216 bits (551), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 120/267 (44%), Positives = 147/267 (55%), Gaps = 68/267 (25%)

Query: 61  PPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY-------KKRFYCG 113
           PP   +P   EKC  CTCG  NK  RIVGG  T V +YPW+ALLMY         +FYCG
Sbjct: 61  PPTVTEPSQAEKCTTCTCGLTNKHNRIVGGNETLVIEYPWVALLMYLSTNYLRTAKFYCG 120

Query: 114 ATLINNLYVLTAAHCVH------------------------QGLGIWVTIRGKSFSN--- 146
            T+IN+ YVLTAAHC+H                        Q   +  TI+   +SN   
Sbjct: 121 GTVINSRYVLTAAHCIHKFDPSKLIVRILEHDWNSTNESKTQDFKVEKTIKHSGYSNVNY 180

Query: 147 ---------------------------------KTGIVTGWGVQKQGGSTSDTLLEVEVP 173
                                            + G VTGWG  K+GGS S  L +V+VP
Sbjct: 181 DNDIGLIKLKEPIKFQGSMRPACLPEQGKTFAGEKGTVTGWGATKEGGSVSSHLQKVDVP 240

Query: 174 ILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE 232
           ILSNAEC+ T+Y + +IT NMLCAGY +G KDSCQGDSGGPLH      +++VG+VSWGE
Sbjct: 241 ILSNAECRATSYPSYKITDNMLCAGYKQGGKDSCQGDSGGPLHVEKNGANYVVGIVSWGE 300

Query: 233 GCAQENYPGVYARVNRYLTWIKNNTID 259
           GCA+  YPGVY R NR+LTWI++NT D
Sbjct: 301 GCARPGYPGVYCRTNRFLTWIEHNTKD 327

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431800|ref|XP_002063916.1| GK15652 [Drosophila willistoni] gi|194160001|gb|EDW74902.1| GK15652 [Drosophila willistoni]

 Score =  213 bits (542), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 118/251 (47%), Positives = 141/251 (56%), Gaps = 61/251 (24%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
            KC  C CG  N + RIVGGQ T VHQYPW+A+L+Y  RFYC ATL+N+ ++LTA+HCV+
Sbjct: 105 RKCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRFYCAATLLNDQFLLTASHCVY 164

Query: 131 QGLGIWVTIR----------------------------GKSFSNKTGIV----------- 151
                 +++R                             +++ N   I+           
Sbjct: 165 GFRRERISVRLLEHDRKMSHTQKIDRKVSEVITHPKYNARNYDNDIAIIKLDEPVEFNEL 224

Query: 152 --------------------TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP 191
                               TGWG  K GG TSDTL EV+VPILS  EC+K+ Y N+IT 
Sbjct: 225 LHPVCMPTPGRSFKGETGIVTGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITD 284

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY-ANETV-HHIVGVVSWGEGCAQENYPGVYARVNRY 249
           NMLC GY +G KDSCQGDSGGPLH  AN T  H I GVVSWGEGCA+  YPGVYARVNRY
Sbjct: 285 NMLCGGYDEGGKDSCQGDSGGPLHIVANGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY 344

Query: 250 LTWIKNNTIDA 260
            TWIKN T  A
Sbjct: 345 GTWIKNLTKQA 355

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195486357|ref|XP_002091474.1| GE13675 [Drosophila yakuba] gi|194177575|gb|EDW91186.1| GE13675 [Drosophila yakuba]

 Score =  209 bits (533), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 114/251 (45%), Positives = 138/251 (54%), Gaps = 61/251 (24%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             C  C CG  N + RIVGGQ T VHQYPW+A+L+Y  RFYC A+L+N+ ++LTA+HCV+
Sbjct: 117 RNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRFYCAASLLNDQFLLTASHCVY 176

Query: 131 QGLGIWVTIR----------------------------GKSFSNKTGI------------ 150
                 +++R                             +++ N   I            
Sbjct: 177 GFRKERISVRLLEHDRKMSHMQKIDRKVAEVITHPKYNARNYDNDIAIIKLDEPVEFNEV 236

Query: 151 -------------------VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP 191
                              VTGWG  K GG TSDTL EV+VPILS  EC+K+ Y N+IT 
Sbjct: 237 LHPVCMPTPGRSFKGENGIVTGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITD 296

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY--ANETVHHIVGVVSWGEGCAQENYPGVYARVNRY 249
           NMLC GY +G KDSCQGDSGGPLH   +    H I GVVSWGEGCA+  YPGVYARVNRY
Sbjct: 297 NMLCGGYDEGGKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY 356

Query: 250 LTWIKNNTIDA 260
            TWIKN T  A
Sbjct: 357 GTWIKNLTKQA 367

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19922714|ref|NP_611611.1| CG4386 [Drosophila melanogaster] gi|10727021|gb|AAF46764.2| CG4386 [Drosophila melanogaster] gi|15292331|gb|AAK93434.1| LD47230p [Drosophila melanogaster] gi|220946474|gb|ACL85780.1| CG4386-PA [synthetic construct] gi|220956142|gb|ACL90614.1| CG4386-PA [synthetic construct]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 138/251 (54%), Gaps = 61/251 (24%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             C  C CG  N + RIVGGQ T VHQYPW+A+L+Y  RFYC A+L+N+ ++LTA+HCV+
Sbjct: 111 RNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRFYCAASLLNDQFLLTASHCVY 170

Query: 131 QGLGIWVTIR----------------------------GKSFSNKTGIV----------- 151
                 +++R                             +++ N   I+           
Sbjct: 171 GFRKERISVRLLEHDRKMSHMQKIDRKVAEVITHPKYNARNYDNDIAIIKLDEPVEFNEV 230

Query: 152 --------------------TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP 191
                               TGWG  K GG TSDTL EV+VPILS  EC+K+ Y N+IT 
Sbjct: 231 LHPVCMPTPGRSFKGENGIVTGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITD 290

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY--ANETVHHIVGVVSWGEGCAQENYPGVYARVNRY 249
           NMLC GY +G KDSCQGDSGGPLH   +    H I GVVSWGEGCA+  YPGVYARVNRY
Sbjct: 291 NMLCGGYDEGGKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY 350

Query: 250 LTWIKNNTIDA 260
            TWIKN T  A
Sbjct: 351 GTWIKNLTKQA 361

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194882026|ref|XP_001975114.1| GG20743 [Drosophila erecta] gi|190658301|gb|EDV55514.1| GG20743 [Drosophila erecta]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 138/251 (54%), Gaps = 61/251 (24%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             C  C CG  N + RIVGGQ T VHQYPW+A+L+Y  RFYC A+L+N+ ++LTA+HCV+
Sbjct: 111 RNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRFYCAASLLNDQFLLTASHCVN 170

Query: 131 QGLGIWVTIR----------------------------GKSFSNKTGIV----------- 151
                 +++R                             +++ N   I+           
Sbjct: 171 GFRKERISVRLLEHDRKMSHMQKIDRKVAEVITHPKYNARNYDNDIAIIKLDEPVEFNEV 230

Query: 152 --------------------TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP 191
                               TGWG  K GG TSDTL EV+VPILS  EC+K+ Y N+IT 
Sbjct: 231 LHPVCMPTPGRSFKGENGIVTGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITD 290

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY--ANETVHHIVGVVSWGEGCAQENYPGVYARVNRY 249
           NMLC GY +G KDSCQGDSGGPLH   +    H I GVVSWGEGCA+  YPGVYARVNRY
Sbjct: 291 NMLCGGYDEGGKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY 350

Query: 250 LTWIKNNTIDA 260
            TWIKN T  A
Sbjct: 351 GTWIKNLTKQA 361

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195346561|ref|XP_002039826.1| GM15686 [Drosophila sechellia] gi|194135175|gb|EDW56691.1| GM15686 [Drosophila sechellia]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 138/251 (54%), Gaps = 61/251 (24%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             C  C CG  N + RIVGGQ T VHQYPW+A+L+Y  RFYC A+L+N+ ++LTA+HCV+
Sbjct: 111 RNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRFYCAASLLNDQFLLTASHCVY 170

Query: 131 QGLGIWVTIR----------------------------GKSFSNKTGIV----------- 151
                 +++R                             +++ N   I+           
Sbjct: 171 GFRKERISVRLLEHDRKMSHMQKIDRKVAEVITHPKYNARNYDNDIAIIKLDEPVEFNDV 230

Query: 152 --------------------TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP 191
                               TGWG  K GG TSDTL EV+VPILS  EC+K+ Y N+IT 
Sbjct: 231 LHPVCMPTPGRSFKGENGIVTGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITD 290

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY--ANETVHHIVGVVSWGEGCAQENYPGVYARVNRY 249
           NMLC GY +G KDSCQGDSGGPLH   +    H I GVVSWGEGCA+  YPGVYARVNRY
Sbjct: 291 NMLCGGYDEGGKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY 350

Query: 250 LTWIKNNTIDA 260
            TWIKN T  A
Sbjct: 351 GTWIKNLTKQA 361

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195585556|ref|XP_002082547.1| GD25165 [Drosophila simulans] gi|194194556|gb|EDX08132.1| GD25165 [Drosophila simulans]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 138/251 (54%), Gaps = 61/251 (24%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             C  C CG  N + RIVGGQ T VHQYPW+A+L+Y  RFYC A+L+N+ ++LTA+HCV+
Sbjct: 111 RNCSDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRFYCAASLLNDQFLLTASHCVY 170

Query: 131 QGLGIWVTIR----------------------------GKSFSNKTGIV----------- 151
                 +++R                             +++ N   I+           
Sbjct: 171 GFRKERISVRLLEHDRKMSHMQKIDRKVSEVITHPKYNARNYDNDIAIIKLDEPVEFNEV 230

Query: 152 --------------------TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP 191
                               TGWG  K GG TSDTL EV+VPILS  EC+K+ Y N+IT 
Sbjct: 231 LHPVCMPTPGRSFKGENGIVTGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITD 290

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY--ANETVHHIVGVVSWGEGCAQENYPGVYARVNRY 249
           NMLC GY +G KDSCQGDSGGPLH   +    H I GVVSWGEGCA+  YPGVYARVNRY
Sbjct: 291 NMLCGGYDEGGKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY 350

Query: 250 LTWIKNNTIDA 260
            TWIKN T  A
Sbjct: 351 GTWIKNLTKQA 361

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194755970|ref|XP_001960252.1| GF11616 [Drosophila ananassae] gi|190621550|gb|EDV37074.1| GF11616 [Drosophila ananassae]

 Score =  209 bits (531), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 138/251 (54%), Gaps = 61/251 (24%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             C  C CG  N + RIVGGQ T VHQYPW+A+L+Y  RFYC A+L+N+ ++LTA+HCV+
Sbjct: 118 RNCSDCLCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRFYCAASLLNDQFLLTASHCVY 177

Query: 131 QGLGIWVTIR----------------------------GKSFSNKTGIV----------- 151
                 +++R                             +++ N   I+           
Sbjct: 178 GFRRERISVRLLEHDRKMSHMQKIDRKVAEVITHPKYNARNYDNDIAIIKLDEPVEFNEV 237

Query: 152 --------------------TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP 191
                               TGWG  K GG TSDTL EV+VPILS  EC+K+ Y N+IT 
Sbjct: 238 LHPVCMPTPGRSFKGETGIVTGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITD 297

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY--ANETVHHIVGVVSWGEGCAQENYPGVYARVNRY 249
           NMLC GY +G KDSCQGDSGGPLH   +    H I GVVSWGEGCA+  YPGVYARVNRY
Sbjct: 298 NMLCGGYDEGGKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRY 357

Query: 250 LTWIKNNTIDA 260
            TWIKN T  A
Sbjct: 358 GTWIKNLTKQA 368

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195154348|ref|XP_002018084.1| GL17516 [Drosophila persimilis] gi|194113880|gb|EDW35923.1| GL17516 [Drosophila persimilis]

 Score =  208 bits (529), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 113/251 (45%), Positives = 137/251 (54%), Gaps = 61/251 (24%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             C  C CG  N + RIVGGQ T VHQYPW+A+L+Y  RFYC A+L+N+ ++LTA+HCV+
Sbjct: 116 RNCTDCVCGIANIQKRIVGGQETEVHQYPWVAMLLYGGRFYCAASLLNDQFLLTASHCVY 175

Query: 131 QGLGIWVTIR----------------------------GKSFSNKTGIV----------- 151
                 +T+R                             +++ N   I+           
Sbjct: 176 GFRRERITVRLLDHNRKMSHTQKIDRNVAEVITHPKYNARNYDNDIAIIKLDEPVQFDEV 235

Query: 152 --------------------TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP 191
                               TGWG  K GG TSDTL EV+VPILS   C+K+ Y N+IT 
Sbjct: 236 LHPVCMPTPGRSFKGETGIVTGWGALKVGGPTSDTLQEVQVPILSQDACRKSRYGNKITD 295

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY--ANETVHHIVGVVSWGEGCAQENYPGVYARVNRY 249
           NMLC GY +G KDSCQGDSGGPLH   +    H I GVVSWGEGCA+  YPGVYARVNRY
Sbjct: 296 NMLCGGYDEGGKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKSGYPGVYARVNRY 355

Query: 250 LTWIKNNTIDA 260
            TWIKN T  A
Sbjct: 356 GTWIKNLTKQA 366

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	260
FB|FBgn0034661	372	CG4386 [Drosophila melanogaste	0.461	0.322	0.688	2.9e-62
FB|FBgn0042098	364	CG18735 [Drosophila melanogast	0.457	0.326	0.549	6.9e-55
FB|FBgn0034666	352	CG9294 [Drosophila melanogaste	0.492	0.363	0.470	7.7e-50
FB|FBgn0031619	314	CG3355 [Drosophila melanogaste	0.446	0.369	0.550	1.2e-47
FB|FBgn0036436	374	CG4914 [Drosophila melanogaste	0.446	0.310	0.520	2e-47
FB|FBgn0039272	325	CG11836 [Drosophila melanogast	0.423	0.338	0.504	5.3e-45
FB|FBgn0036427	411	CG4613 [Drosophila melanogaste	0.453	0.287	0.516	6.7e-45
ZFIN|ZDB-GENE-030131-5862	433	tmprss4b "transmembrane protea	0.396	0.237	0.514	1.1e-38
RGD|1305033	435	Tmprss4 "transmembrane proteas	0.4	0.239	0.504	2.7e-38
ZFIN|ZDB-GENE-070912-70	543	tmprss3a "transmembrane protea	0.434	0.208	0.443	1.1e-37

FB|FBgn0034661 CG4386 [Drosophila melanogaster (taxid:7227)]

 Score = 436 (158.5 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
 Identities = 84/122 (68%), Positives = 93/122 (76%)

Query:   141 GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPK 200
             G+SF  + GIVTGWG  K GG TSDTL EV+VPILS  EC+K+ Y N+IT NMLC GY +
Sbjct:   240 GRSFKGENGIVTGWGALKVGGPTSDTLQEVQVPILSQDECRKSRYGNKITDNMLCGGYDE 299

Query:   201 GEKDSCQGDSGGPLHY-ANET-VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI 258
             G KDSCQGDSGGPLH  A+ T  H I GVVSWGEGCA+  YPGVYARVNRY TWIKN T 
Sbjct:   300 GGKDSCQGDSGGPLHIVASGTREHQIAGVVSWGEGCAKAGYPGVYARVNRYGTWIKNLTK 359

Query:   259 DA 260
              A
Sbjct:   360 QA 361

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

FB|FBgn0042098 CG18735 [Drosophila melanogaster (taxid:7227)]

 Score = 364 (133.2 bits), Expect = 6.9e-55, Sum P(2) = 6.9e-55
 Identities = 67/122 (54%), Positives = 86/122 (70%)

Query:   142 KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY-ENRITPNMLCAGY-P 199
             ++++ +T +VTGWG   +GG  SDTL EVEVPILS  EC+ + Y E++IT NM+CAGY  
Sbjct:   197 ENYAGQTAVVTGWGALSEGGPISDTLQEVEVPILSQEECRNSNYGESKITDNMICAGYVE 256

Query:   200 KGEKDSCQGDSGGPLHYANE-TVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI 258
             +G KDSCQGDSGGP+H       + + G+VSWGEGCA+ N PGVY RV  +  WI  NT 
Sbjct:   257 QGGKDSCQGDSGGPMHVLGSGDAYQLAGIVSWGEGCAKPNAPGVYTRVGSFNDWIAENTR 316

Query:   259 DA 260
             DA
Sbjct:   317 DA 318

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0034666 CG9294 [Drosophila melanogaster (taxid:7227)]

 Score = 324 (119.1 bits), Expect = 7.7e-50, Sum P(2) = 7.7e-50
 Identities = 63/134 (47%), Positives = 88/134 (65%)

Query:   130 HQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-TAYE-N 187
             H+   I + ++  SF ++ GIV GWG Q++GG  +DTL EV+V +L  +EC+  T Y   
Sbjct:   205 HRLRPICLPVQSYSFDHELGIVAGWGAQREGGFGTDTLREVDVVVLPQSECRNGTTYRPG 264

Query:   188 RITPNMLCAGY-PKGEKDSCQGDSGGPLHYANETV---HHIVGVVSWGEGCAQENYPGVY 243
             +IT NM+CAGY  +G KD+C GDSGGPL    +     + + G+VSWG GCA+   PGVY
Sbjct:   265 QITDNMMCAGYISEGGKDACSGDSGGPLQTTFDEQPGQYQLAGIVSWGVGCARPQSPGVY 324

Query:   244 ARVNRYLTWIKNNT 257
              RVN+YL W+ +NT
Sbjct:   325 TRVNQYLRWLGSNT 338

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

FB|FBgn0031619 CG3355 [Drosophila melanogaster (taxid:7227)]

 Score = 354 (129.7 bits), Expect = 1.2e-47, Sum P(2) = 1.2e-47
 Identities = 65/118 (55%), Positives = 89/118 (75%)

Query:   143 SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGY-PKG 201
             +F  KT +V GWG+ K+GG TS+ L EV VP+++NA+C++T Y+++I   MLCAG   +G
Sbjct:   192 NFDGKTAVVAGWGLIKEGGVTSNYLQEVNVPVITNAQCRQTRYKDKIAEVMLCAGLVQQG 251

Query:   202 EKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID 259
              KD+CQGDSGGPL   NE  + + GVVS+G GCAQ+N PGVYARV+++L WI+ NT D
Sbjct:   252 GKDACQGDSGGPL-IVNEGRYKLAGVVSFGYGCAQKNAPGVYARVSKFLDWIRKNTAD 308

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0036436 CG4914 [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 2.0e-47, Sum P(2) = 2.0e-47
 Identities = 63/121 (52%), Positives = 77/121 (63%)

Query:   144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENR-ITPNMLCAGYPK- 200
             F     I TGWG  K+ G  S  L EVEVP+L N EC  +T Y  + IT NM+C+GYP  
Sbjct:   246 FVGTKAIATGWGTLKEDGKPSCLLQEVEVPVLDNDECVAQTNYTQKMITKNMMCSGYPGV 305

Query:   201 GEKDSCQGDSGGPLHYA--NETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI 258
             G +DSCQGDSGGPL     ++     +G+VSWG GCA+ NYPGVY RV +YL WI  N+ 
Sbjct:   306 GGRDSCQGDSGGPLVRLRPDDKRFEQIGIVSWGNGCARPNYPGVYTRVTKYLDWIVENSR 365

Query:   259 D 259
             D
Sbjct:   366 D 366

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

FB|FBgn0039272 CG11836 [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 5.3e-45, Sum P(2) = 5.3e-45
 Identities = 57/113 (50%), Positives = 78/113 (69%)

Query:   145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEK 203
             + + G V GWG   +GG     + +V+VPI+S  EC+   Y++ RIT +MLCAG P    
Sbjct:   207 AGRIGTVVGWGRTSEGGELPSIVNQVKVPIMSITECRNQRYKSTRITSSMLCAGRPS--M 264

Query:   204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
             DSCQGDSGGPL  +N   + IVG+VSWG GC +E YPGVY+RV++++ WIK+N
Sbjct:   265 DSCQGDSGGPLLLSNGVKYFIVGIVSWGVGCGREGYPGVYSRVSKFIPWIKSN 317

GO:0006508 "proteolysis" evidence=IEA;NAS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

FB|FBgn0036427 CG4613 [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 62/120 (51%), Positives = 85/120 (70%)

Query:   142 KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPK- 200
             ++F  +  IV GWG+ ++GGSTS  L EV VPI++NA+C+ T+Y + I   M+CAGY K 
Sbjct:   288 QNFDFQKAIVAGWGLSQEGGSTSSVLQEVVVPIITNAQCRATSYRSMIVDTMMCAGYVKT 347

Query:   201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA 260
             G +D+CQGDSGGPL    + +  + GVVS+G GCA+ + PGVY RV+RYL WI  NT D+
Sbjct:   348 GGRDACQGDSGGPL-IVRDRIFRLAGVVSFGYGCAKPDAPGVYTRVSRYLEWIAVNTRDS 406

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;NAS

GO:0006508 "proteolysis" evidence=IEA;NAS

ZFIN|ZDB-GENE-030131-5862 tmprss4b "transmembrane protease, serine 4b" [Danio rerio (taxid:7955)]

 Score = 300 (110.7 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 54/105 (51%), Positives = 73/105 (69%)

Query:   150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRITPNMLCAGYPKGEKDSCQG 208
             +VTGWG+ K+GG+    L +  VP+++ +EC K T Y + ITP MLCAG+ +G  D+CQG
Sbjct:   322 VVTGWGLLKEGGALPTVLQKASVPLVNRSECSKPTIYSSSITPRMLCAGFLQGNVDACQG 381

Query:   209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
             DSGGPL Y +     ++G+VSWG GCA+E  PGVYA V + L WI
Sbjct:   382 DSGGPLVYLSSR-WQLIGIVSWGVGCAREGKPGVYADVTQLLDWI 425

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

RGD|1305033 Tmprss4 "transmembrane protease, serine 4" [Rattus norvegicus (taxid:10116)]

 Score = 293 (108.2 bits), Expect = 2.7e-38, Sum P(2) = 2.7e-38
 Identities = 54/107 (50%), Positives = 70/107 (65%)

Query:   151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECK-KTAYENRITPNMLCAGYPKGEKDSCQG 208
             V GWG  ++ GG  SDTLL+  V ++ +A C  + AY+  +T  MLCAG P+G KD+CQG
Sbjct:   324 VIGWGFTEENGGKMSDTLLQASVQVIDSARCNAEDAYQGEVTAGMLCAGTPQGGKDTCQG 383

Query:   209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
             DSGGPL Y  +    +VG+VSWG GC   + PGVY +V  YL WI N
Sbjct:   384 DSGGPLMYHYDK-WQVVGIVSWGYGCGSPSTPGVYTKVTAYLDWIYN 429

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-070912-70 tmprss3a "transmembrane protease, serine 3a" [Danio rerio (taxid:7955)]

 Score = 279 (103.3 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
 Identities = 51/115 (44%), Positives = 72/115 (62%)

Query:   141 GKSFSN-KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGY 198
             G+ F + K   ++GWG  + GG  S +     VP++SN  C +   Y+  +T  M+CAGY
Sbjct:   410 GEQFEDGKMCWISGWGATEDGGDASVSQHCASVPLISNKACSQPEVYQGYLTAGMICAGY 469

Query:   199 PKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
               G  DSCQGDSGGPL   + ++  +VG  SWG+GCA++N PGVY R+ + LTWI
Sbjct:   470 LDGGTDSCQGDSGGPLACEDSSIWKLVGATSWGQGCAEKNKPGVYTRITQSLTWI 524

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005044 "scavenger receptor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	260
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	4e-50
smart00020	229	smart00020, Tryp_SPc, Trypsin-like serine protease	3e-45
pfam00089	218	pfam00089, Trypsin, Trypsin	2e-34
cd00190	232	cd00190, Tryp_SPc, Trypsin-like serine protease; M	1e-14
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	1e-13
COG5640	413	COG5640, COG5640, Secreted trypsin-like serine pro	4e-04

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score =  163 bits (416), Expect = 4e-50
 Identities = 62/112 (55%), Positives = 74/112 (66%), Gaps = 1/112 (0%)

Query: 146 NKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA-YENRITPNMLCAGYPKGEKD 204
             T  V+GWG   +GG   D L EV VPI+SNAECK+   Y   IT NMLCAG  +G KD
Sbjct: 121 GTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYSYGGTITDNMLCAGGLEGGKD 180

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           +CQGDSGGPL   +     +VG+VSWG GCA+ NYPGVY RV+ YL WI+  
Sbjct: 181 ACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT 232

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|214473 smart00020, Tryp_SPc, Trypsin-like serine protease

 Score =  151 bits (383), Expect = 3e-45
 Identities = 59/110 (53%), Positives = 71/110 (64%), Gaps = 3/110 (2%)

Query: 146 NKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEK 203
             T  V+GWG   +G GS  DTL EV VPI+SNA C++       IT NMLCAG  +G K
Sbjct: 121 GTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAYSGGGAITDNMLCAGGLEGGK 180

Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           D+CQGDSGGPL   +     +VG+VSWG GCA+   PGVY RV+ YL WI
Sbjct: 181 DACQGDSGGPLVCNDGR-WVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI 229

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues. Length = 229

>gnl|CDD|215708 pfam00089, Trypsin, Trypsin

 Score =  122 bits (309), Expect = 2e-34
 Identities = 55/106 (51%), Positives = 68/106 (64%), Gaps = 7/106 (6%)

Query: 148 TGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
           T  V+GWG  K  G   DTL EV VP++S   C+  AY   +T NM+CAG   G KD+CQ
Sbjct: 120 TCTVSGWGNTKTLG-LPDTLQEVTVPVVSRETCRS-AYGGTVTDNMICAGA--GGKDACQ 175

Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GDSGGPL  ++  +   +G+VSWG GCA  NYPGVY  V+ YL WI
Sbjct: 176 GDSGGPLVCSDGEL---IGIVSWGYGCASGNYPGVYTPVSSYLDWI 218

Length = 218

>gnl|CDD|238113 cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 130
           IVGG    +  +PW   L Y   R +CG +LI+  +VLTAAHCV+
Sbjct: 1   IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVY 45

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues. Length = 232

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 69.5 bits (170), Expect = 1e-13
 Identities = 39/115 (33%), Positives = 49/115 (42%), Gaps = 15/115 (13%)

Query: 151 VTGWGVQKQG---GST--SDTLLEVEVPILSNAECKKTAYENRITPNM------LCAGYP 199
              +GV        S+     L EV V  +  + C           +        CAG P
Sbjct: 163 NGTFGVTTPSDVPRSSPKGTILHEVAVLFVPLSTCA-QYKGCANASDGATGLTGFCAGRP 221

Query: 200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWI 253
              KD+CQGDSGGP+ +  E      GVVSWG+G C     PGVY  V+ Y  WI
Sbjct: 222 P--KDACQGDSGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTNVSNYQDWI 274

Length = 413

>gnl|CDD|227927 COG5640, COG5640, Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

 Score = 41.0 bits (96), Expect = 4e-04
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 5/49 (10%)

Query: 86  RIVGGQVTYVHQYPWMALLM-----YKKRFYCGATLINNLYVLTAAHCV 129
           RI+GG      +YP +  L+     Y    +CG + +   YVLTAAHC 
Sbjct: 32  RIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCA 80

Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	260
cd00190	232	Tryp_SPc Trypsin-like serine protease; Many of the	100.0
KOG3627|consensus	256		100.0
smart00020	229	Tryp_SPc Trypsin-like serine protease. Many of the	99.97
PF00089	220	Trypsin: Trypsin; InterPro: IPR001254 In the MEROP	99.97
COG5640	413	Secreted trypsin-like serine protease [Posttransla	99.94
PF03761	282	DUF316: Domain of unknown function (DUF316) ; Inte	99.44
COG3591	251	V8-like Glu-specific endopeptidase [Amino acid tra	98.66
PF09342	267	DUF1986: Domain of unknown function (DUF1986); Int	98.09
PF13365	120	Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8	97.25
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	96.01
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	95.88
PRK10898	353	serine endoprotease; Provisional	94.67
PF02395	769	Peptidase_S6: Immunoglobulin A1 protease Serine pr	91.57
PRK10139	455	serine endoprotease; Provisional	91.29
PRK10942	473	serine endoprotease; Provisional	87.25

>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms

Probab=100.00  E-value=2.5e-34  Score=243.38  Aligned_cols=170  Identities=49%  Similarity=0.911  Sum_probs=141.4

Q ss_pred             eeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEecccccccC---------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQG---------------------------------  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~~---------------------------------  132 (260)
                      |+||.++..++|||+|.|+.. ..+.|+||||+++||||||||+...                                 
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhC~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp   80 (232)
T cd00190           1 IVGGSEAKIGSFPWQVSLQYTGGRHFCGGSLISPRWVLTAAHCVYSSAPSNYTVRLGSHDLSSNEGGGQVIKVKKVIVHP   80 (232)
T ss_pred             CcCCeECCCCCCCCEEEEEccCCcEEEEEEEeeCCEEEECHHhcCCCCCccEEEEeCcccccCCCCceEEEEEEEEEECC
Confidence            579999999999999999987 7899999999999999999998641                                 


Q ss_pred             --------CCcee------------------eccC-cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhc
Q psy8662         133 --------LGIWV------------------TIRG-KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY  185 (260)
Q Consensus       133 --------~~i~l------------------~~~~-~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~  185 (260)
                              +|+.|                  +... ....+..+.++|||...........+++..+.+++.++|...+.
T Consensus        81 ~y~~~~~~~DiAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~  160 (232)
T cd00190          81 NYNPSTYDNDIALLKLKRPVTLSDNVRPICLPSSGYNLPAGTTCTVSGWGRTSEGGPLPDVLQEVNVPIVSNAECKRAYS  160 (232)
T ss_pred             CCCCCCCcCCEEEEEECCcccCCCcccceECCCccccCCCCCEEEEEeCCcCCCCCCCCceeeEEEeeeECHHHhhhhcc
Confidence                    11222                  1111 22346789999999876554566789999999999999998643


Q ss_pred             C-CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHH
Q psy8662         186 E-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN  256 (260)
Q Consensus       186 ~-~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  256 (260)
                      . ..+.+++||+.......+.|.|||||||++..+++|+|+||+|++..|...+.|++|++|..|++||+++
T Consensus       161 ~~~~~~~~~~C~~~~~~~~~~c~gdsGgpl~~~~~~~~~lvGI~s~g~~c~~~~~~~~~t~v~~~~~WI~~~  232 (232)
T cd00190         161 YGGTITDNMLCAGGLEGGKDACQGDSGGPLVCNDNGRGVLVGIVSWGSGCARPNYPGVYTRVSSYLDWIQKT  232 (232)
T ss_pred             CcccCCCceEeeCCCCCCCccccCCCCCcEEEEeCCEEEEEEEEehhhccCCCCCCCEEEEcHHhhHHhhcC
Confidence            2 4678899999876546789999999999999889999999999999998767899999999999999864

Alignment contains also inactive enzymes that have substitutions of the catalytic triad residues.

>KOG3627|consensus

Probab=100.00  E-value=1.2e-32  Score=238.68  Aligned_cols=176  Identities=48%  Similarity=0.879  Sum_probs=145.4

Q ss_pred             CCCceeCCeeCCCCCCceEEEEEecC--eeeeeeEEEeCCEEEecccccccCC---------------------------
Q psy8662          83 KKTRIVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCVHQGL---------------------------  133 (260)
Q Consensus        83 ~~~ri~gG~~a~~~~~Pw~v~l~~~~--~~~C~GtLIs~~~VLTAAhCv~~~~---------------------------  133 (260)
                      ...||+||.++..++|||+|+|....  .++|+|+||+++||||||||+....                           
T Consensus         9 ~~~~i~~g~~~~~~~~Pw~~~l~~~~~~~~~Cggsli~~~~vltaaHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~~~   88 (256)
T KOG3627|consen    9 PEGRIVGGTEAEPGSFPWQVSLQYGGNGRHLCGGSLISPRWVLTAAHCVKGASASLYTVRLGEHDINLSVSEGEEQLVGD   88 (256)
T ss_pred             ccCCEeCCccCCCCCCCCEEEEEECCCcceeeeeEEeeCCEEEEChhhCCCCCCcceEEEECccccccccccCchhhhce
Confidence            35689999999999999999999876  7899999999999999999986521                           


Q ss_pred             ------------------Cce------------------eeccCc---ccCCceEEEEeeeecCCC-CCCCccceEEEEE
Q psy8662         134 ------------------GIW------------------VTIRGK---SFSNKTGIVTGWGVQKQG-GSTSDTLLEVEVP  173 (260)
Q Consensus       134 ------------------~i~------------------l~~~~~---~~~~~~~~v~Gwg~~~~~-~~~~~~l~~~~v~  173 (260)
                                        ||.                  ||....   ...+..+.++|||.+... ...+..|++++++
T Consensus        89 v~~~i~H~~y~~~~~~~nDiall~l~~~v~~~~~i~piclp~~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v~  168 (256)
T KOG3627|consen   89 VEKIIVHPNYNPRTLENNDIALLRLSEPVTFSSHIQPICLPSSADPYFPPGGTTCLVSGWGRTESGGGPLPDTLQEVDVP  168 (256)
T ss_pred             eeEEEECCCCCCCCCCCCCEEEEEECCCcccCCcccccCCCCCcccCCCCCCCEEEEEeCCCcCCCCCCCCceeEEEEEe
Confidence                              111                  111111   223478899999987654 3457889999999


Q ss_pred             eeChhhHhhhhcCC-CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHH
Q psy8662         174 ILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLT  251 (260)
Q Consensus       174 vi~~~~C~~~~~~~-~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~  251 (260)
                      +++.++|+..+... .+++.+||++......++|+|||||||++..+++|+++||+|||.. |+..+.|++||+|+.|++
T Consensus       169 i~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPLv~~~~~~~~~~GivS~G~~~C~~~~~P~vyt~V~~y~~  248 (256)
T KOG3627|consen  169 IISNSECRRAYGGLGTITDTMLCAGGPEGGKDACQGDSGGPLVCEDNGRWVLVGIVSWGSGGCGQPNYPGVYTRVSSYLD  248 (256)
T ss_pred             EcChhHhcccccCccccCCCEEeeCccCCCCccccCCCCCeEEEeeCCcEEEEEEEEecCCCCCCCCCCeEEeEhHHhHH
Confidence            99999999875443 5677899999756667899999999999998779999999999988 998889999999999999


Q ss_pred             HHHHHhh
Q psy8662         252 WIKNNTI  258 (260)
Q Consensus       252 WI~~~~~  258 (260)
                      ||++.+.
T Consensus       249 WI~~~~~  255 (256)
T KOG3627|consen  249 WIKENIG  255 (256)
T ss_pred             HHHHHhc
Confidence            9999875

>smart00020 Tryp_SPc Trypsin-like serine protease

Probab=99.97  E-value=5.4e-31  Score=223.38  Aligned_cols=167  Identities=49%  Similarity=0.881  Sum_probs=136.7

Q ss_pred             ceeCCeeCCCCCCceEEEEEecC-eeeeeeEEEeCCEEEecccccccC--------------------------------
Q psy8662          86 RIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQG--------------------------------  132 (260)
Q Consensus        86 ri~gG~~a~~~~~Pw~v~l~~~~-~~~C~GtLIs~~~VLTAAhCv~~~--------------------------------  132 (260)
                      ||+||+++..++|||+|.|+... .+.|+||||++++|||||||+...                                
T Consensus         1 ~~~~G~~~~~~~~Pw~~~i~~~~~~~~C~GtlIs~~~VLTaahC~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~~~~~p   80 (229)
T smart00020        1 RIVGGSEANIGSFPWQVSLQYRGGRHFCGGSLISPRWVLTAAHCVYGSDPSNIRVRLGSHDLSSGEEGQVIKVSKVIIHP   80 (229)
T ss_pred             CccCCCcCCCCCCCcEEEEEEcCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEeCcccCCCCCCceEEeeEEEEECC
Confidence            58999999999999999999887 889999999999999999999631                                


Q ss_pred             --------CCcee------------------ecc-CcccCCceEEEEeeeecCC-CCCCCccceEEEEEeeChhhHhhhh
Q psy8662         133 --------LGIWV------------------TIR-GKSFSNKTGIVTGWGVQKQ-GGSTSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       133 --------~~i~l------------------~~~-~~~~~~~~~~v~Gwg~~~~-~~~~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                              +|+.|                  +.. .....+..+.++|||.... .......++...+.+++.+.|...+
T Consensus        81 ~~~~~~~~~DiAll~L~~~i~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~  160 (229)
T smart00020       81 NYNPSTYDNDIALLKLKSPVTLSDNVRPICLPSSNYNVPAGTTCTVSGWGRTSEGAGSLPDTLQEVNVPIVSNATCRRAY  160 (229)
T ss_pred             CCCCCCCcCCEEEEEECcccCCCCceeeccCCCcccccCCCCEEEEEeCCCCCCCCCcCCCEeeEEEEEEeCHHHhhhhh
Confidence                    11222                  111 1222457889999998763 2344677899999999999998864


Q ss_pred             cC-CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHH
Q psy8662         185 YE-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       185 ~~-~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  253 (260)
                      .. ..+...++|++........|.||+|+||++..+ +|+|+||+|++..|...+.|.+|++|..|++||
T Consensus       161 ~~~~~~~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~-~~~l~Gi~s~g~~C~~~~~~~~~~~i~~~~~WI  229 (229)
T smart00020      161 SGGGAITDNMLCAGGLEGGKDACQGDSGGPLVCNDG-RWVLVGIVSWGSGCARPGKPGVYTRVSSYLDWI  229 (229)
T ss_pred             ccccccCCCcEeecCCCCCCcccCCCCCCeeEEECC-CEEEEEEEEECCCCCCCCCCCEEEEeccccccC
Confidence            33 257889999987654678999999999999877 999999999999998677899999999999998

Many of these are synthesised as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms. A few, however, are active as single chain molecules, and others are inactive due to substitutions of the catalytic triad residues.

>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.97  E-value=2.2e-29  Score=211.57  Aligned_cols=161  Identities=46%  Similarity=0.915  Sum_probs=133.7

Q ss_pred             eeCCeeCCCCCCceEEEEEecC-eeeeeeEEEeCCEEEeccccccc--C-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ--G-------------------------------  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~-~~~C~GtLIs~~~VLTAAhCv~~--~-------------------------------  132 (260)
                      |.||..+..++|||+|.|+... .++|+|+||+++||||||||+..  +                               
T Consensus         1 i~~g~~~~~~~~p~~v~i~~~~~~~~C~G~li~~~~vLTaahC~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~h~~~   80 (220)
T PF00089_consen    1 IVGGDPASPGEFPWVVSIRYSNGRFFCTGTLISPRWVLTAAHCVDGASDIKVRLGTYSIRNSDGSEQTIKVSKIIIHPKY   80 (220)
T ss_dssp             SBSSEECGTTSSTTEEEEEETTTEEEEEEEEEETTEEEEEGGGHTSGGSEEEEESESBTTSTTTTSEEEEEEEEEEETTS
T ss_pred             CCCCEECCCCCCCeEEEEeeCCCCeeEeEEeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            6899999999999999999987 89999999999999999999966  1                               


Q ss_pred             ------CCceeeccC-------------------cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         133 ------LGIWVTIRG-------------------KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       133 ------~~i~l~~~~-------------------~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                            +|+.|....                   ....+..+.+.||+.....+ ....++...+.+++.+.|+.. +..
T Consensus        81 ~~~~~~~DiAll~L~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~-~~~  158 (220)
T PF00089_consen   81 DPSTYDNDIALLKLDRPITFGDNIQPICLPSAGSDPNVGTSCIVVGWGRTSDNG-YSSNLQSVTVPVVSRKTCRSS-YND  158 (220)
T ss_dssp             BTTTTTTSEEEEEESSSSEHBSSBEESBBTSTTHTTTTTSEEEEEESSBSSTTS-BTSBEEEEEEEEEEHHHHHHH-TTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccc-ccc
Confidence                  112221000                   01346789999999865443 456789999999999999986 445


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHH
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  253 (260)
                      .+.+.++|++.. ...+.|.|||||||++.+.   +|+||++++..|...+.|.+|++|+.|++||
T Consensus       159 ~~~~~~~c~~~~-~~~~~~~g~sG~pl~~~~~---~lvGI~s~~~~c~~~~~~~v~~~v~~~~~WI  220 (220)
T PF00089_consen  159 NLTPNMICAGSS-GSGDACQGDSGGPLICNNN---YLVGIVSFGENCGSPNYPGVYTRVSSYLDWI  220 (220)
T ss_dssp             TSTTTEEEEETT-SSSBGGTTTTTSEEEETTE---EEEEEEEEESSSSBTTSEEEEEEGGGGHHHH
T ss_pred             cccccccccccc-cccccccccccccccccee---eecceeeecCCCCCCCcCEEEEEHHHhhccC
Confidence            578899999876 5578999999999998764   8999999999999887899999999999999

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine proteases belong to the MEROPS peptidase family S1 (chymotrypsin family, clan PA(S))and to peptidase family S6 (Hap serine peptidases). The chymotrypsin family is almost totally confined to animals, although trypsin-like enzymes are found in actinomycetes of the genera Streptomyces and Saccharopolyspora, and in the fungus Fusarium oxysporum []. The enzymes are inherently secreted, being synthesised with a signal peptide that targets them to the secretory pathway. Animal enzymes are either secreted directly, packaged into vesicles for regulated secretion, or are retained in leukocyte granules []. The Hap family, 'Haemophilus adhesion and penetration', are proteins that play a role in the interaction with human epithelial cells. The serine protease activity is localized at the N-terminal domain, whereas the binding domain is in the C-terminal region. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1SPJ_A 1A5I_A 2ZGH_A 2ZKS_A 2ZGJ_A 2ZGC_A 2ODP_A 2I6Q_A 2I6S_A 2ODQ_A ....

>COG5640 Secreted trypsin-like serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.2e-26  Score=202.85  Aligned_cols=174  Identities=34%  Similarity=0.572  Sum_probs=129.3

Q ss_pred             CCCceeCCeeCCCCCCceEEEEEecC-----eeeeeeEEEeCCEEEecccccccCC------------------------
Q psy8662          83 KKTRIVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCVHQGL------------------------  133 (260)
Q Consensus        83 ~~~ri~gG~~a~~~~~Pw~v~l~~~~-----~~~C~GtLIs~~~VLTAAhCv~~~~------------------------  133 (260)
                      .+.||+||..|..++||++|+|..+.     ..+|||++|..|||||||||+....                        
T Consensus        29 vs~rIigGs~Anag~~P~~VaLv~~isd~~s~tfCGgs~l~~RYvLTAAHC~~~~s~is~d~~~vv~~l~d~Sq~~rg~v  108 (413)
T COG5640          29 VSSRIIGGSNANAGEYPSLVALVDRISDYVSGTFCGGSKLGGRYVLTAAHCADASSPISSDVNRVVVDLNDSSQAERGHV  108 (413)
T ss_pred             cceeEecCcccccccCchHHHHHhhcccccceeEeccceecceEEeeehhhccCCCCccccceEEEecccccccccCcce
Confidence            46789999999999999999997643     4689999999999999999997611                        


Q ss_pred             ----------------CceeeccCc----------c-----------cCCceEEEEeeeecCCCC-----CCCccceEEE
Q psy8662         134 ----------------GIWVTIRGK----------S-----------FSNKTGIVTGWGVQKQGG-----STSDTLLEVE  171 (260)
Q Consensus       134 ----------------~i~l~~~~~----------~-----------~~~~~~~v~Gwg~~~~~~-----~~~~~l~~~~  171 (260)
                                      ++.+....+          .           .........+|+.+....     .....++++.
T Consensus       109 r~i~~~efY~~~n~~ND~Av~~l~~~a~~pr~ki~~~~~sdt~l~sv~~~s~~~n~t~~~~~~~~v~~~~p~gt~l~e~~  188 (413)
T COG5640         109 RTIYVHEFYSPGNLGNDIAVLELARAASLPRVKITSFDASDTFLNSVTTVSPMTNGTFGVTTPSDVPRSSPKGTILHEVA  188 (413)
T ss_pred             EEEeeecccccccccCcceeeccccccccchhheeeccCcccceecccccccccceeeeeeeecCCCCCCCccceeeeee
Confidence                            111100000          0           011222334555443211     1124789999


Q ss_pred             EEeeChhhHhhhhcCC-----CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEe
Q psy8662         172 VPILSNAECKKTAYEN-----RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYAR  245 (260)
Q Consensus       172 v~vi~~~~C~~~~~~~-----~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~  245 (260)
                      +..++...|...+...     ...-.-+|++.+.  .++|+||||||++.+.+....++||+|||.+ |+.+..|+|||+
T Consensus       189 v~fv~~stc~~~~g~an~~dg~~~lT~~cag~~~--~daCqGDSGGPi~~~g~~G~vQ~GVvSwG~~~Cg~t~~~gVyT~  266 (413)
T COG5640         189 VLFVPLSTCAQYKGCANASDGATGLTGFCAGRPP--KDACQGDSGGPIFHKGEEGRVQRGVVSWGDGGCGGTLIPGVYTN  266 (413)
T ss_pred             eeeechHHhhhhccccccCCCCCCccceecCCCC--cccccCCCCCceEEeCCCccEEEeEEEecCCCCCCCCcceeEEe
Confidence            9999999998864211     1112239998654  8999999999999998888899999999986 999999999999


Q ss_pred             chhhHHHHHHHhh
Q psy8662         246 VNRYLTWIKNNTI  258 (260)
Q Consensus       246 V~~y~~WI~~~~~  258 (260)
                      |+.|.+||..+|+
T Consensus       267 vsny~~WI~a~~~  279 (413)
T COG5640         267 VSNYQDWIAAMTN  279 (413)
T ss_pred             hhHHHHHHHHHhc
Confidence            9999999999886

>PF03761 DUF316: Domain of unknown function (DUF316) ; InterPro: IPR005514 This is a family of uncharacterised proteins from Caenorhabditis elegans

Probab=99.44  E-value=2.2e-12  Score=113.72  Aligned_cols=188  Identities=24%  Similarity=0.336  Sum_probs=105.2

Q ss_pred             CCCCCcCCCCCCccCCCCCCCceeCCeeCCCCCCceEEEEEecC----eeeeeeEEEeCCEEEecccccccCC-------
Q psy8662          65 VKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGL-------  133 (260)
Q Consensus        65 ~~~~~~~~c~~~~cg~~~~~~ri~gG~~a~~~~~Pw~v~l~~~~----~~~C~GtLIs~~~VLTAAhCv~~~~-------  133 (260)
                      ++...++.||..   ......++.+|..+..++.||.|.+....    .++++|||||+|||||++||+..+.       
T Consensus        23 EN~~rl~~CG~~---~~~~~~~~~~g~~~~~~~~pW~v~v~~~~~~~~~~~~~gtlIS~RHiLtss~~~~~~~~~W~~~~   99 (282)
T PF03761_consen   23 ENEERLETCGKK---KLPYPSKVFNGTPAESGEAPWAVSVYTKNHNEGNYFSTGTLISPRHILTSSHCVMNDKSKWLNGE   99 (282)
T ss_pred             HHHHHHHhcCCC---CCCCcccccCCcccccCCCCCEEEEEeccCcccceecceEEeccCeEEEeeeEEEecccccccCc
Confidence            344445555521   12344557899999999999999998753    3568999999999999999997311       


Q ss_pred             ------------CceeeccCc---cc--------------CCceEEEEeee-ecCC--CCCCCccceEEEEE--eeChhh
Q psy8662         134 ------------GIWVTIRGK---SF--------------SNKTGIVTGWG-VQKQ--GGSTSDTLLEVEVP--ILSNAE  179 (260)
Q Consensus       134 ------------~i~l~~~~~---~~--------------~~~~~~v~Gwg-~~~~--~~~~~~~l~~~~v~--vi~~~~  179 (260)
                                  .+.+|....   .+              .-..+++.+.= ....  .......+.+++-.  ....-.
T Consensus       100 ~~~~~~C~~~~~~l~vP~~~l~~~~v~~~~~~~~~~~~~~~v~ka~il~~C~~~~~~~~~~~~~mIlEl~~~~~~~~~~~  179 (282)
T PF03761_consen  100 EFDNKKCEGNNNHLIVPEEVLSKIDVRCCNCFSNGKCFSIKVKKAYILNGCKKIKKNFNRPYSPMILELEEDFSKNVSPP  179 (282)
T ss_pred             ccccceeeCCCceEEeCHHHhccEEEEeecccccCCcccceeEEEEEEecCCCcccccccccceEEEEEcccccccCCCE
Confidence                        111111000   00              01122332221 0000  00111122222222  111222


Q ss_pred             Hhhhh------------cCC-----------CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC-CC
Q psy8662         180 CKKTA------------YEN-----------RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CA  235 (260)
Q Consensus       180 C~~~~------------~~~-----------~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~  235 (260)
                      |-...            ++.           .+....-|..........|.+|+||||+...+++|+|+||.+.+.. |.
T Consensus       180 Cl~~~~~~~~~~~~~~~yg~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~d~Gg~lv~~~~gr~tlIGv~~~~~~~~~  259 (282)
T PF03761_consen  180 CLADSSTNWEKGDEVDVYGFNSTGKLKHRKLKITNCTKCAYSICTKQYSCKGDRGGPLVKNINGRWTLIGVGASGNYECN  259 (282)
T ss_pred             EeCCCccccccCceEEEeecCCCCeEEEEEEEEEEeeccceeEecccccCCCCccCeEEEEECCCEEEEEEEccCCCccc
Confidence            21100            000           0000001333333446789999999999999999999999998763 43


Q ss_pred             CCCCCcEEEechhhHHHHHHHh
Q psy8662         236 QENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       236 ~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      ..  ...|.+|..|.+=|.+.+
T Consensus       260 ~~--~~~f~~v~~~~~~IC~lt  279 (282)
T PF03761_consen  260 KN--NSYFFNVSWYQDEICELT  279 (282)
T ss_pred             cc--ccEEEEHHHhhhhhccce
Confidence            22  578999999998776654

>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism]

Probab=98.66  E-value=2.2e-07  Score=79.81  Aligned_cols=54  Identities=24%  Similarity=0.450  Sum_probs=38.7

Q ss_pred             CCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEec-hhhHHHHHHHhh
Q psy8662         202 EKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARV-NRYLTWIKNNTI  258 (260)
Q Consensus       202 ~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V-~~y~~WI~~~~~  258 (260)
                      ..+++.|+||+|++...+   +++||..-+..=.......-.+|+ ..+++||+++++
T Consensus       197 ~~dT~pG~SGSpv~~~~~---~vigv~~~g~~~~~~~~~n~~vr~t~~~~~~I~~~~~  251 (251)
T COG3591         197 DADTLPGSSGSPVLISKD---EVIGVHYNGPGANGGSLANNAVRLTPEILNFIQQNIK  251 (251)
T ss_pred             EecccCCCCCCceEecCc---eEEEEEecCCCcccccccCcceEecHHHHHHHHHhhC
Confidence            367899999999998765   899999988652221223344555 567899998764

>PF09342 DUF1986: Domain of unknown function (DUF1986); InterPro: IPR015420 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.09  E-value=3.8e-06  Score=71.24  Aligned_cols=37  Identities=22%  Similarity=0.733  Sum_probs=34.6

Q ss_pred             CCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc
Q psy8662          95 VHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ  131 (260)
Q Consensus        95 ~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~  131 (260)
                      ...|||+|.|+..|.+.|+|+||.++|||++..|+..
T Consensus        13 ~y~WPWlA~IYvdG~~~CsgvLlD~~WlLvsssCl~~   49 (267)
T PF09342_consen   13 DYHWPWLADIYVDGRYWCSGVLLDPHWLLVSSSCLRG   49 (267)
T ss_pred             cccCcceeeEEEcCeEEEEEEEeccceEEEeccccCC
Confidence            4569999999999999999999999999999999865

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found in serine endopeptidases belonging to MEROPS peptidase family S1A (clan PA). It is found in unusual mosaic proteins, which are encoded by the Drosophila nudel gene (see P98159 from SWISSPROT). Nudel is involved in defining embryonic dorsoventral polarity. Three proteases; ndl, gd and snk process easter to create active easter. Active easter defines cell identities along the dorsal-ventral continuum by activating the spz ligand for the Tl receptor in the ventral region of the embryo. Nudel, pipe and windbeutel together trigger the protease cascade within the extraembryonic perivitelline compartment which induces dorsoventral polarity of the Drosophila embryo [].

>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A

Probab=97.25  E-value=0.0005  Score=51.73  Aligned_cols=20  Identities=45%  Similarity=0.527  Sum_probs=18.8

Q ss_pred             eeeEEEeCC-EEEeccccccc
Q psy8662         112 CGATLINNL-YVLTAAHCVHQ  131 (260)
Q Consensus       112 C~GtLIs~~-~VLTAAhCv~~  131 (260)
                      |+|.+|+++ +|||+|||+..
T Consensus         1 GTGf~i~~~g~ilT~~Hvv~~   21 (120)
T PF13365_consen    1 GTGFLIGPDGYILTAAHVVED   21 (120)
T ss_dssp             EEEEEEETTTEEEEEHHHHTC
T ss_pred             CEEEEEcCCceEEEchhheec
Confidence            789999999 99999999985

...

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=96.01  E-value=0.072  Score=48.61  Aligned_cols=22  Identities=18%  Similarity=0.365  Sum_probs=19.2

Q ss_pred             eeeeeEEEeCC-EEEeccccccc
Q psy8662         110 FYCGATLINNL-YVLTAAHCVHQ  131 (260)
Q Consensus       110 ~~C~GtLIs~~-~VLTAAhCv~~  131 (260)
                      ...+|.+|+++ +|||++|-+..
T Consensus        78 ~~GSG~vi~~~G~IlTn~HVV~~  100 (351)
T TIGR02038        78 GLGSGVIMSKEGYILTNYHVIKK  100 (351)
T ss_pred             ceEEEEEEeCCeEEEecccEeCC
Confidence            35999999976 99999999865

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=95.88  E-value=0.052  Score=50.79  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.1

Q ss_pred             eeeeeeEEEeCC-EEEeccccccc
Q psy8662         109 RFYCGATLINNL-YVLTAAHCVHQ  131 (260)
Q Consensus       109 ~~~C~GtLIs~~-~VLTAAhCv~~  131 (260)
                      ...++|.+|+++ +|||++|.+..
T Consensus        57 ~~~GSGfii~~~G~IlTn~Hvv~~   80 (428)
T TIGR02037        57 RGLGSGVIISADGYILTNNHVVDG   80 (428)
T ss_pred             cceeeEEEECCCCEEEEcHHHcCC
Confidence            457999999976 99999999976

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>PRK10898 serine endoprotease; Provisional

Probab=94.67  E-value=0.55  Score=42.87  Aligned_cols=22  Identities=18%  Similarity=0.465  Sum_probs=19.0

Q ss_pred             eeeeeEEEeCC-EEEeccccccc
Q psy8662         110 FYCGATLINNL-YVLTAAHCVHQ  131 (260)
Q Consensus       110 ~~C~GtLIs~~-~VLTAAhCv~~  131 (260)
                      ...+|.+|+++ +|||.+|=+..
T Consensus        78 ~~GSGfvi~~~G~IlTn~HVv~~  100 (353)
T PRK10898         78 TLGSGVIMDQRGYILTNKHVIND  100 (353)
T ss_pred             ceeeEEEEeCCeEEEecccEeCC
Confidence            46999999976 99999999865

>PF02395 Peptidase_S6: Immunoglobulin A1 protease Serine protease Prosite pattern; InterPro: IPR000710 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.57  E-value=0.23  Score=49.76  Aligned_cols=32  Identities=38%  Similarity=0.578  Sum_probs=23.1

Q ss_pred             CCcCCCCCceEEee--CCeeEEEEEEeeCCCCCC
Q psy8662         205 SCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQ  236 (260)
Q Consensus       205 ~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~  236 (260)
                      .-.||||+||+.-+  +.+|+|+|+++.+.+...
T Consensus       213 ~~~GDSGSPlF~YD~~~kKWvl~Gv~~~~~~~~g  246 (769)
T PF02395_consen  213 GSPGDSGSPLFAYDKEKKKWVLVGVLSGGNGYNG  246 (769)
T ss_dssp             --TT-TT-EEEEEETTTTEEEEEEEEEEECCCCH
T ss_pred             cccCcCCCceEEEEccCCeEEEEEEEccccccCC
Confidence            45699999999765  589999999998876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S6 (clan PA(S)). The type sample being the IgA1-specific serine endopeptidase from Neisseria gonorrhoeae []. These cleave prolyl bonds in the hinge regions of immunoglobulin A heavy chains. Similar specificity is shown by the unrelated family of M26 metalloendopeptidases.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3SZE_A 3H09_B 3SYJ_A 1WXR_A 3AK5_B.

>PRK10139 serine endoprotease; Provisional

Probab=91.29  E-value=1.4  Score=41.60  Aligned_cols=22  Identities=32%  Similarity=0.427  Sum_probs=19.0

Q ss_pred             eeeeeEEEeC--CEEEeccccccc
Q psy8662         110 FYCGATLINN--LYVLTAAHCVHQ  131 (260)
Q Consensus       110 ~~C~GtLIs~--~~VLTAAhCv~~  131 (260)
                      ...+|.+|++  -||||.+|.+..
T Consensus        90 ~~GSG~ii~~~~g~IlTn~HVv~~  113 (455)
T PRK10139         90 GLGSGVIIDAAKGYVLTNNHVINQ  113 (455)
T ss_pred             ceEEEEEEECCCCEEEeChHHhCC
Confidence            4799999974  699999999975

>PRK10942 serine endoprotease; Provisional

Probab=87.25  E-value=4.7  Score=38.40  Aligned_cols=23  Identities=26%  Similarity=0.358  Sum_probs=19.4

Q ss_pred             eeeeeeEEEeC--CEEEeccccccc
Q psy8662         109 RFYCGATLINN--LYVLTAAHCVHQ  131 (260)
Q Consensus       109 ~~~C~GtLIs~--~~VLTAAhCv~~  131 (260)
                      ....+|.+|+.  -+|||.+|.+..
T Consensus       110 ~~~GSG~ii~~~~G~IlTn~HVv~~  134 (473)
T PRK10942        110 MALGSGVIIDADKGYVVTNNHVVDN  134 (473)
T ss_pred             cceEEEEEEECCCCEEEeChhhcCC
Confidence            34699999985  599999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	260
2f91_A	237	1.2a Resolution Structure Of A Crayfish Trypsin Com		2e-27
1fxy_A	228	Coagulation Factor Xa-Trypsin Chimera Inhibited Wit		8e-27
2f83_A	625	Crystal Structure At 2.9 Angstroms Resolution Of Hu		3e-26
1zlr_A	237	Factor Xi Catalytic Domain Complexed With 2-Guanidi		6e-26
1zhr_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		6e-26
1xxd_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		6e-26
1zjd_A	237	Crystal Structure Of The Catalytic Domain Of Coagul		6e-26
1zpz_A	238	Factor Xi Catalytic Domain Complexed With N-((R)-1-		6e-26
3sor_A	238	Factor Xia In Complex With A Clorophenyl-tetrazole		6e-26
1zhm_A	238	Crystal Structure Of The Catalytic Domain Of The Co		6e-26
1xx9_A	238	Crystal Structure Of The Fxia Catalytic Domain In C		6e-26
3bg8_A	238	Crystal Structure Of Factor Xia In Complex With Cla		6e-26
2any_A	241	Expression, Crystallization And The Three-Dimension		1e-25
2anw_A	241	Expression, Crystallization And Three-Dimensional S		1e-25
1zhp_A	238	Crystal Structure Of The Catalytic Domain Of Coagul		3e-25
3veq_B	223	A Binary Complex Betwwen Bovine Pancreatic Trypsin		1e-24
1f0t_A	243	Bovine Trypsin Complexed With Rpr131247 Length = 24		2e-24
1zzz_A	237	Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes		3e-24
1tab_E	223	Structure Of The Trypsin-Binding Domain Of Bowman-B		3e-24
2fi4_E	223	Crystal Structure Of A Bpti Variant (Cys14->ser) In		3e-24
2ftm_A	224	Crystal Structure Of A Bpti Variant (Cys38->ser) In		3e-24
1ntp_A	223	Use Of The Neutron Diffraction HD EXCHANGE TECHNIQU		3e-24
3otj_E	223	A Crystal Structure Of Trypsin Complexed With Bpti		3e-24
1g3b_A	228	Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Ba		3e-24
1y59_T	223	Dianhydrosugar-Based Benzamidine, Factor Xa Specifi		3e-24
1tgs_Z	229	Three-Dimensional Structure Of The Complex Between		3e-24
3qk1_A	229	Crystal Structure Of Enterokinase-Like Trypsin Vari		3e-24
1taw_A	223	Bovine Trypsin Complexed To Appi Length = 223		4e-24
1mct_A	223	The Refined 1.6 Angstroms Resolution Crystal Struct		5e-24
1oph_B	243	Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh		5e-24
4an7_A	231	Kunitz Type Trypsin Inhibitor Complex With Porcine		7e-24
4dgj_A	235	Structure Of A Human Enteropeptidase Light Chain Va		8e-24
3myw_A	223	The Bowman-Birk Type Inhibitor From Mung Bean In Te		9e-24
5ptp_A	223	Structure Of Hydrolase (Serine Proteinase) Length =		1e-23
2d8w_A	223	Structure Of Hyper-Vil-Trypsin Length = 223		1e-23
1ekb_B	235	The Serine Protease Domain Of Enteropeptidase Bound		1e-23
1tfx_A	223	Complex Of The Second Kunitz Domain Of Tissue Facto		2e-23
1an1_E	223	Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Len		2e-23
2a31_A	223	Trypsin In Complex With Borate Length = 223		6e-23
1kig_H	241	Bovine Factor Xa Length = 241		1e-22
1trn_A	224	Crystal Structure Of Human Trypsin 1: Unexpected Ph		3e-22
1a0j_A	223	Crystal Structure Of A Non-Psychrophilic Trypsin Fr		7e-22
3i77_A	230	3599170-Loops Of Fxa In Sgt Length = 230		8e-22
2ra3_A	224	Human Cationic Trypsin Complexed With Bovine Pancre		9e-22
1xvm_A	224	Trypsin From Fusarium Oxysporum- Room Temperature T		1e-21
1gdu_A	224	Fusarium Oxysporum Trypsin At Atomic Resolution Len		1e-21
1rjx_B	247	Human Plasminogen Catalytic Domain, K698m Mutant Le		3e-21
1ppz_A	224	Trypsin Complexes At Atomic And Ultra-High Resoluti		4e-21
1sgt_A	223	Refined Crystal Structure Of Streptomyces Griseus T		4e-21
3i78_A	229	3599170186220-Loops Of Fxa In Sgt Length = 229		4e-21
1os8_A	223	Recombinant Streptomyces Griseus Trypsin Length = 2		5e-21
1co7_E	245	R117h Mutant Rat Anionic Trypsin Complexed With Bov		5e-21
1fax_A	254	Coagulation Factor Xa Inhibitor Complex Length = 25		7e-21
1ezq_A	254	Crystal Structure Of Human Coagulation Factor Xa Co		7e-21
1xka_C	235	Factor Xa Complexed With A Synthetic Inhibitor Fx-2		7e-21
1c5m_D	255	Structural Basis For Selectivity Of A Small Molecul		7e-21
1fjs_A	234	Crystal Structure Of The Inhibitor Zk-807834 (Ci-10		7e-21
1mq5_A	233	Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-ch		7e-21
3ens_B	238	Crystal Structure Of Human Fxa In Complex With Meth		8e-21
2y5f_A	234	Factor Xa - Cation Inhibitor Complex Length = 234		8e-21
2bok_A	241	Factor Xa- Cation Length = 241		8e-21
1hcg_A	241	Structure Of Human Des(1-45) Factor Xa At 2.2 Angst		8e-21
1oss_A	223	T190p Streptomyces Griseus Trypsin In Complex With		9e-21
3bn9_B	241	Crystal Structure Of Mt-Sp1 In Complex With Fab Inh		9e-21
2bq6_B	249	Crystal Structure Of Factor Xa In Complex With 21 L		1e-20
3tgj_E	233	S195a Trypsinogen Complexed With Bovine Pancreatic		1e-20
2fmj_A	222	220-Loop Mutant Of Streptomyces Griseus Trypsin Len		1e-20
3uir_A	247	Crystal Structure Of The Plasmin-Textilinin-1 Compl		1e-20
1bui_B	250	Structure Of The Ternary Microplasmin-Staphylokinas		1e-20
1eaw_A	241	Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (A		1e-20
1qrz_A	246	Catalytic Domain Of Plasminogen Length = 246		1e-20
1f7z_A	233	Rat Trypsinogen K15a Complexed With Bovine Pancreat		1e-20
1h9h_E	231	Complex Of Eeti-Ii With Porcine Trypsin Length = 23		1e-20
3p8g_A	241	Crystal Structure Of Mt-Sp1 In Complex With Benzami		1e-20
2gd4_H	241	Crystal Structure Of The Antithrombin-S195a Factor		2e-20
2wph_S	235	Factor Ixa Superactive Triple Mutant Length = 235		2e-20
2wpi_S	235	Factor Ixa Superactive Double Mutant Length = 235		2e-20
1hj9_A	223	Atomic Resolution Structures Of Trypsin Provide Ins		2e-20
1ddj_A	247	Crystal Structure Of Human Plasminogen Catalytic Do		2e-20
1l4z_A	248	X-Ray Crystal Structure Of The Complex Of Microplas		2e-20
1bml_A	250	Complex Of The Catalytic Domain Of Human Plasmin An		2e-20
1l4d_A	249	Crystal Structure Of Microplasminogen-streptokinase		2e-20
1z8g_A	372	Crystal Structure Of The Extracellular Region Of Th		3e-20
3t2n_A	372	Human Hepsin Protease In Complex With The Fab Fragm		3e-20
2wpm_S	235	Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Le		3e-20
3beu_A	224	Na+-Dependent Allostery Mediates Coagulation Factor		3e-20
1o5e_H	255	Dissecting And Designing Inhibitor Selectivity Dete		4e-20
4dur_A	791	The X-Ray Crystal Structure Of Full-Length Type Ii		4e-20
1and_A	223	Anionic Trypsin Mutant With Arg 96 Replaced By His		5e-20
1ybw_A	283	Protease Domain Of Hgfa With No Inhibitor Length =		5e-20
1pfx_C	235	Porcine Factor Ixa Length = 235		5e-20
2wub_A	257	Crystal Structure Of Hgfa In Complex With The Allos		5e-20
2r0l_A	248	Short Form Hgfa With Inhibitory Fab75 Length = 248		5e-20
2oq5_A	232	Crystal Structure Of Desc1, A New Member Of The Typ		6e-20
1ezs_C	223	Crystal Structure Of Ecotin Mutant M84r, W67a, G68a		6e-20
3tgi_E	223	Wild-Type Rat Anionic Trypsin Complexed With Bovine		6e-20
1ept_C	98	Refined 1.8 Angstroms Resolution Crystal Structure		7e-20
1trm_A	223	The Three-Dimensional Structure Of Asn102 Mutant Of		7e-20
1v2s_T	223	Benzamidine In Complex With Bovine Trypsin Variant		8e-20
1slw_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		8e-20
1slx_B	223	Rat Anionic N143h, E151h Trypsin Complexed To A86h		8e-20
1rfn_A	235	Human Coagulation Factor Ixa In Complex With P-Amin		1e-19
1dan_H	254	Complex Of Active Site Inhibited Human Blood Coagul		1e-19
1k9o_E	223	Crystal Structure Of Michaelis Serpin-Trypsin Compl		1e-19
1v2j_T	223	Benzamidine In Complex With Bovine Trypsin Variant		1e-19
1fiz_A	263	Three Dimensional Structure Of Beta-Acrosin From Bo		1e-19
1v2k_T	223	Factor Xa Specific Inhibitor In Complex With Bovine		2e-19
1anc_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Lys		2e-19
1anb_A	223	Anionic Trypsin Mutant With Ser 214 Replaced By Glu		2e-19
1v2u_T	223	Benzamidine In Complex With Bovine Trypsin Varinat		2e-19
2tld_E	220	Crystal Structure Of An Engineered Subtilisin Inhib		2e-19
1dpo_A	223	Structure Of Rat Trypsin Length = 223		2e-19
3kcg_H	235	Crystal Structure Of The Antithrombin-Factor Ixa- P		2e-19
3pwb_A	223	Bovine Trypsin Variant X(Tripleglu217ile227) In Com		2e-19
2eek_A	220	Crystal Structure Of Atlantic Cod Trypsin Complexed		2e-19
1fy8_E	231	Crystal Structure Of The Deltaile16val17 Rat Anioni		3e-19
1uhb_B	98	Crystal Structure Of Porcine Alpha Trypsin Bound Wi		3e-19
1v2o_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		3e-19
1ql9_A	223	Factor Xa Specific Inhibitor In Complex With Rat Tr		3e-19
1amh_A	223	Uncomplexed Rat Trypsin Mutant With Asp 189 Replace		3e-19
3ela_H	254	Crystal Structure Of Active Site Inhibited Coagulat		4e-19
1f5r_A	231	Rat Trypsinogen Mutant Complexed With Bovine Pancre		4e-19
4b2a_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		4e-19
1h4w_A	224	Structure Of Human Trypsin Iv (Brain Trypsin) Lengt		4e-19
1v2q_T	223	Trypsin Inhibitor In Complex With Bovine Trypsin Va		6e-19
1v2n_T	223	Potent Factor Xa Inhibitor In Complex With Bovine T		6e-19
2r9p_A	224	Human Mesotrypsin Complexed With Bovine Pancreatic		8e-19
3plk_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		9e-19
4dg4_A	224	Human Mesotrypsin-S39y Complexed With Bovine Pancre		9e-19
3pmj_A	223	Bovine Trypsin Variant X(Tripleile227) In Complex W		9e-19
3uqv_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		9e-19
3tgk_E	231	Trypsinogen Mutant D194n And Deletion Of Ile 16-Val		1e-18
4b2b_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-18
2tbs_A	222	Cold-Adaption Of Enzymes: Structural Comparison Bet		1e-18
4b1t_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		1e-18
3v0x_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		2e-18
3uwi_A	223	Bovine Trypsin Variant X(Tripleglu217phe227) In Com		2e-18
3uns_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		2e-18
1fiw_A	290	Three-Dimensional Structure Of Beta-Acrosin From Ra		2e-18
1brb_E	223	Crystal Structures Of Rat Anionic Trypsin Complexed		3e-18
3unq_A	223	Bovine Trypsin Variant X(Triplephe227) In Complex W		4e-18
4b2c_A	223	Structure Of The Factor Xa-Like Trypsin Variant Tri		4e-18
1utj_A	242	Trypsin Specificity As Elucidated By Lie Calculatio		4e-18
1bit_A	237	The Crystal Structure Of Anionic Salmon Trypsin In		4e-18
2zpr_A	222	Crystal Structure Of Anionic Trypsin Isoform 2 From		5e-18
1hj8_A	222	1.00 Aa Trypsin From Atlantic Salmon Length = 222		5e-18
1bzx_E	222	The Crystal Structure Of Anionic Salmon Trypsin In		6e-18
1l2e_A	223	Human Kallikrein 6 (Hk6) Active Form With Benzamidi		7e-18
3gyl_B	261	Structure Of Prostasin At 1.3 Angstroms Resolution		1e-17
3e0p_B	271	The X-Ray Structure Of Human Prostasin In Complex W		1e-17
3dfj_A	263	Crystal Structure Of Human Prostasin Length = 263		1e-17
1j15_A	223	Benzamidine In Complex With Rat Trypsin Mutant X991		1e-17
4fu7_A	246	Crystal Structure Of The Urokinase Length = 246		1e-17
1owe_A	245	Substituted 2-Naphthamidine Inhibitors Of Urokinase		1e-17
2zps_A	222	Crystal Structure Of Anionic Trypsin Isoform 3 From		1e-17
2nwn_A	253	New Pharmacophore For Serine Protease Inhibition Re		2e-17
1mbq_A	220	Anionic Trypsin From Pacific Chum Salmon Length = 2		2e-17
2zpq_A	222	Crystal Structure Of Anionic Trypsin Isoform 1 From		2e-17
1sc8_U	262	Urokinase Plasminogen Activator B-Chain-J435 Comple		2e-17
1gi8_B	245	A Novel Serine Protease Inhibition Motif Involving		2e-17
1fv9_A	245	Crystal Structure Of Human Microurokinase In Comple		2e-17
2vnt_A	276	Urokinase-Type Plasminogen Activator Inhibitor Comp		2e-17
1w0z_U	247	Urokinase Type Plasminogen Activator Length = 247		2e-17
3mwi_U	246	The Complex Crystal Structure Of Urokianse And 5-Ni		2e-17
1gj7_B	253	Engineering Inhibitors Highly Selective For The S1		2e-17
1ejn_A	253	Urokinase Plasminogen Activator B-Chain Inhibitor C		2e-17
1owd_A	245	Substituted 2-naphthamidine Inhibitors Of Urokinase		2e-17
1lmw_B	253	Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-A		2e-17
3ig6_B	253	Low Molecular Weigth Human Urokinase Type Plasminog		3e-17
3f6u_H	240	Crystal Structure Of Human Activated Protein C (Apc		3e-17
2o8u_A	253	Crystal Structure And Binding Epitopes Of Urokinase		3e-17
1aut_C	250	Human Activated Protein C Length = 250		4e-17
3bsq_A	227	Crystal Structure Of Human Kallikrein 7 Produced As		4e-17
2qxg_A	224	Crystal Structure Of Human Kallikrein 7 In Complex		4e-17
1o5a_B	253	Dissecting And Designing Inhibitor Selectivity Dete		5e-17
1bda_A	265	Catalytic Domain Of Human Single Chain Tissue Plasm		8e-17
1rtf_B	252	Complex Of Benzamidine With The Catalytic Domain Of		8e-17
3gov_B	251	Crystal Structure Of The Catalytic Region Of Human		1e-16
4igd_A	406	Crystal Structure Of The Zymogen Catalytic Region O		2e-16
1gvl_A	223	Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M P		4e-16
4d8n_A	223	Human Kallikrein 6 Inhibitors With A Para-Amidobenz		5e-16
1a5i_A	265	Catalytic Domain Of Vampire Bat (Desmodus Rotundus)		6e-16
2f9n_A	245	Crystal Structure Of The Recombinant Human Alpha I		7e-16
1mza_A	240	Crystal Structure Of Human Pro-Granzyme K Length =		8e-16
2cga_A	245	Bovine Chymotrypsinogen A. X-Ray Crystal Structure		9e-16
3tvj_B	242	Catalytic Fragment Of Masp-2 In Complex With Its Sp		1e-15
1dlk_B	230	Crystal Structure Analysis Of Delta-Chymotrypsin Bo		1e-15
1q3x_A	328	Crystal Structure Of The Catalytic Region Of Human		1e-15
1zjk_A	403	Crystal Structure Of The Zymogen Catalytic Region O		1e-15
2bm2_A	245	Human Beta-Ii Tryptase In Complex With 4-(3-Aminome		1e-15
2zeb_A	243	Potent, Nonpeptide Inhibitors Of Human Mast Cell Tr		2e-15
1a0l_A	244	Human Beta-Tryptase: A Ring-Like Tetramer With Acti		2e-15
2f9o_A	245	Crystal Structure Of The Recombinant Human Alpha I		2e-15
1azz_A	226	Fiddler Crab Collagenase Complexed To Ecotin Length		2e-15
4fxg_H	242	Complement C4 In Complex With Masp-2 Length = 242		2e-15
1ym0_A	238	Crystal Structure Of Earthworm Fibrinolytic Enzyme		3e-15
2xrc_A	565	Human Complement Factor I Length = 565		5e-15
1dst_A	228	Mutant Of Factor D With Enhanced Catalytic Activity		7e-15
1mkw_K	308	The Co-Crystal Structure Of Unliganded Bovine Alpha		9e-15
1lto_A	245	Human Alpha1-Tryptase Length = 245		9e-15
1bbr_K	259	The Structure Of Residues 7-16 Of The A Alpha Chain		1e-14
2jet_C	99	Crystal Structure Of A Trypsin-Like Mutant (S189d,		1e-14
1id5_H	256	Crystal Structure Of Bovine Thrombin Complex With P		1e-14
2bvr_H	252	Human Thrombin Complexed With Fragment-based Small		1e-14
1vzq_H	250	Complex Of Thrombin With Designed Inhibitor 7165 Le		1e-14
1h8d_H	260	X-Ray Structure Of The Human Alpha-Thrombin Complex		1e-14
1thp_B	259	Structure Of Human Alpha-Thrombin Y225p Mutant Boun		2e-14
1h8i_H	253	X-Ray Crystal Structure Of Human Alpha-Thrombin Wit		2e-14
2zgc_A	240	Crystal Structure Of Active Human Granzyme M Length		2e-14
2zgj_A	240	Crystal Structure Of D86n-gzmm Complexed With Its O		2e-14
1sgf_G	237	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		3e-14
1kdq_B	99	Crystal Structure Analysis Of The Mutant S189d Rat		4e-14
1twx_B	259	Crystal Structure Of The Thrombin Mutant D221aD222K		6e-14
1bth_H	259	Structure Of Thrombin Complexed With Bovine Pancrea		6e-14
1spj_A	238	Structure Of Mature Human Tissue Kallikrein (Human		6e-14
1npm_A	225	Neuropsin, A Serine Protease Expressed In The Limbi		2e-13
1b7x_B	259	Structure Of Human Alpha-Thrombin Y225i Mutant Boun		2e-13
2bdg_A	223	Human Kallikrein 4 Complex With Nickel And P-aminob		2e-13
2olg_A	278	Crystal Structure Of The Serine Protease Domain Of		2e-13
1mh0_A	287	Crystal Structure Of The Anticoagulant Slow Form Of		2e-13
1d9i_A	288	Structure Of Thrombin Complexed With Selective Non-		2e-13
1d6w_A	287	Structure Of Thrombin Complexed With Selective Non-		2e-13
1jwt_A	305	Crystal Structure Of Thrombin In Complex With A Nov		2e-13
1hag_E	295	The Isomorphous Structures Of Prethrombin2, Hirugen		2e-13
1mtn_C	97	Bovine Alpha-Chymotrypsin:bpti Crystallization Leng		2e-13
1nm6_A	287	Thrombin In Complex With Selective Macrocyclic Inhi		2e-13
2bdy_A	289	Thrombin In Complex With Inhibitor Length = 289		2e-13
1eoj_A	289	Design Of P1' And P3' Residues Of Trivalent Thrombi		2e-13
2thf_B	259	Structure Of Human Alpha-thrombin Y225f Mutant Boun		2e-13
1afq_C	96	Crystal Structure Of Bovine Gamma-Chymotrypsin Comp		2e-13
2a0q_B	257	Structure Of Thrombin In 400 Mm Potassium Chloride		2e-13
1qur_H	257	Human Alpha-Thrombin In Complex With Bivalent, Benz		2e-13
1gj5_H	258	Selectivity At S1, H2o Displacement, Upa, Tpa, Ser1		2e-13
1dx5_M	259	Crystal Structure Of The Thrombin-Thrombomodulin Co		2e-13
3jz1_B	259	Crystal Structure Of Human Thrombin Mutant N143p In		2e-13
1sfq_B	259	Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack		2e-13
1nu9_A	291	Staphylocoagulase-prethrombin-2 Complex Length = 29		2e-13
1abi_H	259	Structure Of The Hirulog 3-Thrombin Complex And Nat		2e-13
2xwa_A	228	Crystal Structure Of Complement Factor D Mutant R20		2e-13
2gp9_B	259	Crystal Structure Of The Slow Form Of Thrombin In A		2e-13
3nxp_A	424	Crystal Structure Of Human Prethrombin-1 Length = 4		2e-13
1m9u_A	241	Crystal Structure Of Earthworm Fibrinolytic Enzyme		2e-13
3r3g_B	259	Structure Of Human Thrombin With Residues 145-150 O		3e-13
4d9q_A	228	Inhibiting Alternative Pathway Complement Activatio		3e-13
1wbg_B	259	Active Site Thrombin Inhibitors Length = 259		3e-13
1fdp_A	235	Proenzyme Of Human Complement Factor D, Recombinant		4e-13
3gic_B	250	Structure Of Thrombin Mutant Delta(146-149e) In The		4e-13
3k65_B	308	Crystal Structure Of Prethombin-2FRAGMENT-2 Complex		4e-13
1dsu_A	228	Human Factor D, Complement Activating Enzyme Length		4e-13
1dm4_B	260	Ser195ala Mutant Of Human Thrombin Complexed With F		4e-13
1eai_A	240	Complex Of Ascaris Chymotrpsin/elastase Inhibitor W		4e-13
2est_E	240	Crystallographic Study Of The Binding Of A Trifluor		4e-13
3sqe_E	290	Crystal Structure Of Prethrombin-2 Mutant S195a In		4e-13
1hax_B	240	Snapshots Of Serine Protease Catalysis: (A) Acyl-En		4e-13
1jou_B	259	Crystal Structure Of Native S195a Thrombin With An		4e-13
1rd3_B	259	2.5a Structure Of Anticoagulant Thrombin Variant E2		6e-13
1orf_A	234	The Oligomeric Structure Of Human Granzyme A Reveal		7e-13
1z8i_B	259	Crystal Structure Of The Thrombin Mutant G193a Boun		8e-13
2xw9_A	228	Crystal Structure Of Complement Factor D Mutant S18		8e-13
2xxl_A	408	Crystal Structure Of Drosophila Grass Clip Serine P		9e-13
2od3_B	259	Human Thrombin Chimera With Human Residues 184a, 18		9e-13
2ocv_B	259	Structural Basis Of Na+ Activation Mimicry In Murin		1e-12
1z8j_B	259	Crystal Structure Of The Thrombin Mutant G193p Boun		2e-12
1vr1_H	261	Specifity For Plasminogen Activator Inhibitor-1 Len		2e-12
2psx_A	227	Crystal Structure Of Human Kallikrein 5 In Complex		2e-12
2pux_B	258	Crystal Structure Of Murine Thrombin In Complex Wit		3e-12
1op8_A	234	Crystal Structure Of Human Granzyme A Length = 234		3e-12
2b9l_A	394	Crystal Structure Of Prophenoloxidase Activating Fa		4e-12
1elv_A	333	Crystal Structure Of The Catalytic Domain Of Human		5e-12
4gaw_A	226	Crystal Structure Of Active Human Granzyme H Length		8e-12
3tju_A	226	Crystal Structure Of Human Granzyme H With An Inhib		8e-12
1bbr_E	109	The Structure Of Residues 7-16 Of The A Alpha Chain		9e-12
2kai_B	152	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		9e-12
1elt_A	236	Structure Of Native Pancreatic Elastase From North		1e-11
2pgb_B	259	Inhibitor-Free Human Thrombin Mutant C191a-C220a Le		2e-11
2pks_C	102	Thrombin In Complex With Inhibitor Length = 102		2e-11
2hnt_F	105	Crystallographic Structure Of Human Gamma-Thrombin		2e-11
1eq9_A	222	Crystal Structure Of Fire Ant Chymotrypsin Complexe		2e-11
1tq0_B	257	Crystal Structure Of The Potent Anticoagulant Throm		3e-11
3ee0_B	259	Crystal Structure Of The W215aE217A MUTANT OF HUMAN		3e-11
1hyl_A	230	The 1.8 A Structure Of Collagenase From Hypoderma L		4e-11
1ton_A	235	Rat Submaxillary Gland Serine Protease, Tonin. Stru		5e-11
2zch_P	237	Crystal Structure Of Human Prostate Specific Antige		5e-11
4gso_A	232	Structure Of Jararacussin-I Length = 232		1e-10
2qy0_B	242	Active Dimeric Structure Of The Catalytic Domain Of		1e-10
2aip_A	231	Crystal Structure Of Native Protein C Activator Fro		1e-10
4h4f_A	249	Crystal Structure Of Human Chymotrypsin C (ctrc) Bo		1e-10
1pyt_D	251	Ternary Complex Of Procarboxypeptidase A, Proprotei		1e-10
1gpz_A	399	The Crystal Structure Of The Zymogen Catalytic Doma		1e-10
1bru_P	241	Structure Of Porcine Pancreatic Elastase Complexed		1e-10
1md8_A	329	Monomeric Structure Of The Active Catalytic Domain		2e-10
3edx_B	258	Crystal Structure Of The W215aE217A MUTANT OF MURIN		2e-10
4e7n_A	238	Crystal Structure Of Ahv_tl-I, A Glycosylated Snake		3e-10
1md7_A	328	Monomeric Structure Of The Zymogen Of Complement Pr		3e-10
1fi8_A	228	Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Ie		4e-10
1fq3_A	227	Crystal Structure Of Human Granzyme B Length = 227		5e-10
1iau_A	227	Human Granzyme B In Complex With Ac-Iepd-Cho Length		6e-10
1bqy_A	234	Plasminogen Activator (tsv-pa) From Snake Venom Len		8e-10
1sgf_A	240	Crystal Structure Of 7s Ngf: A Complex Of Nerve Gro		1e-09
1si5_H	240	Protease-Like Domain From 2-Chain Hepatocyte Growth		1e-09
1shy_A	234	The Crystal Structure Of Hgf Beta-Chain In Complex		1e-09
1euf_A	227	Bovine Duodenase(New Serine Protease), Crystal Stru		2e-09
3s9a_A	234	Russell's Viper Venom Serine Proteinase, Rvv-V (Clo		3e-09
2rdl_A	226	Hamster Chymase 2 Length = 226		1e-08
1ao5_A	237	Mouse Glandular Kallikrein-13 (Prorenin Converting		2e-08
1op2_A	234	Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snak		4e-08
1op0_A	234	Crystal Structure Of Aav-sp-i, A Glycosylated Snake		4e-08
1pyt_C	253	Ternary Complex Of Procarboxypeptidase A, Proprotei		7e-08
1fy3_A	225	[g175q]hbp, A Mutant Of Human Heparin Binding Prote		8e-08
3n7o_A	226	X-Ray Structure Of Human Chymase In Complex With Sm		9e-08
1pjp_A	226	The 2.2 A Crystal Structure Of Human Chymase In Com		9e-08
1a7s_A	225	Atomic Resolution Structure Of Hbp Length = 225		1e-07
1klt_A	226	Crystal Structure Of Pmsf-Treated Human Chymase At		1e-07
2asu_B	234	Crystal Structure Of The Beta-Chain Of HgflMSP Leng		1e-07
4afq_A	226	Human Chymase - Fynomer Complex Length = 226		1e-07
1nn6_A	228	Human Pro-Chymase Length = 228		1e-07
1kyn_B	235	Cathepsin-G Length = 235		2e-07
1au8_A	224	Human Cathepsin G Length = 224		2e-07
3s69_A	234	Crystal Structure Of Saxthrombin Length = 234		4e-07
3rp2_A	224	The Structure Of Rat Mast Cell Protease Ii At 1.9-A		6e-07
3g01_A	227	Structure Of Grc Mutant E192rE193G Length = 227		7e-07
1fon_A	240	Crystal Structure Of Bovine Procarboxypeptidase A-S		8e-07
4f4o_C	347	Structure Of The Haptoglobin-Haemoglobin Complex Le		1e-06
1fy1_A	225	[r23s,F25e]hbp, A Mutant Of Human Heparin Binding P		3e-06
1gvz_A	237	Prostate Specific Antigen (Psa) From Stallion Semin		5e-06
3fzz_A	227	Structure Of Grc Length = 227		6e-06
1fuj_A	221	Pr3 (Myeloblastin) Length = 221		1e-05
2kai_A	80	Refined 2.5 Angstroms X-Ray Crystal Structure Of Th		6e-05
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		2e-04
1hne_E	218	Structure Of Human Neutrophil Elastase In Complex W		4e-04
2win_I	507	C3 Convertase (C3bbb) Stabilized By Scin Length = 5		2e-04
1dle_A	298	Factor B Serine Protease Domain Length = 298		2e-04
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		2e-04
1ppf_E	218	X-Ray Crystal Structure Of The Complex Of Human Leu		4e-04
1rrk_A	497	Crystal Structure Analysis Of The Bb Segment Of Fac		3e-04
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		3e-04
1ppg_E	218	The Refined 2.3 Angstroms Crystal Structure Of Huma		4e-04
2rg3_A	218	Covalent Complex Structure Of Elastase Length = 218		3e-04
3hrz_D	741	Cobra Venom Factor (Cvf) In Complex With Human Fact		3e-04
2ok5_A	752	Human Complement Factor B Length = 752		3e-04
2xwb_F	732	Crystal Structure Of Complement C3b In Complex With		3e-04
1b0f_A	218	Crystal Structure Of Human Neutrophil Elastase With		4e-04
1bbr_H	150	The Structure Of Residues 7-16 Of The A Alpha Chain		5e-04

>pdb|2F91|A Chain A, 1.2a Resolution Structure Of A Crayfish Trypsin Complexed With A Peptide Inhibitor, Sgti Length = 237

Iteration: 1
 Score =  119 bits (297), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 75/109 (68%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           IVTGWG   +GG+T D L +V VP++S+ +C+     + I  +M+CAG P+G KDSCQGD
Sbjct: 129 IVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGD 188
Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI 258
           SGGPL  ++    ++ G+VSWG GCA+  YPGVY  V+ ++ WIK N +
Sbjct: 189 SGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANAV 237

>pdb|1FXY|A Chain A, Coagulation Factor Xa-Trypsin Chimera Inhibited With D-Phe-Pro-Arg- Chloromethylketone Length = 228

Iteration: 1
 Score =  117 bits (292), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 75/227 (33%), Positives = 109/227 (48%), Gaps = 63/227 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQGLG----------- 134
           IVGG      + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q              
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTE 60
Query: 135 ----------IWVTIRGKSFSNKT-----------------------------------G 149
                     + V I+   F+ +T                                    
Sbjct: 61  QEEGGEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKC 120
Query: 150 IVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG     G    D L  ++ P+LS A+C+  +Y  +IT NM C G+ +G KDSCQG
Sbjct: 121 LISGWGNTASSGADYPDELQCLDAPVLSQAKCE-ASYPGKITSNMFCVGFLEGGKDSCQG 179
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           DSGGP+    +    + GVVSWG+GCAQ+N PGVY +V  Y+ WIKN
Sbjct: 180 DSGGPVVCNGQ----LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKN 222

>pdb|2F83|A Chain A, Crystal Structure At 2.9 Angstroms Resolution Of Human Plasma Coagulation Factor Xi Zymogen Length = 625

Iteration: 1
 Score =  115 bits (287), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 516 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 575
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 576 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622

>pdb|1ZLR|A Chain A, Factor Xi Catalytic Domain Complexed With 2-Guanidino-1-(4-(4,4,5,5- Tetramethyl-1,3,2-Dioxaborolan-2-Yl)phenyl)ethyl Nicotinate Length = 237

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|1ZHR|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-C482s-K437a Mutant) Length = 238

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|1XXD|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Mutated Ecotin Length = 238

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|1ZJD|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Kunitz Protease Inhibitor Domain Of Protease Nexin Ii Length = 237

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|1ZPZ|A Chain A, Factor Xi Catalytic Domain Complexed With N-((R)-1-(4- Bromophenyl)ethyl)urea-Asn-Val-Arg-Alpha-Ketothiazole Length = 238

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|3SOR|A Chain A, Factor Xia In Complex With A Clorophenyl-tetrazole Inhibitor Length = 238

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|1ZHM|A Chain A, Crystal Structure Of The Catalytic Domain Of The Coagulation Factor Xia In Complex With Benzamidine (s434a- T475a-k437 Mutant) Length = 238

Iteration: 1
 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|1XX9|A Chain A, Crystal Structure Of The Fxia Catalytic Domain In Complex With Ecotinm84r Length = 238

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|3BG8|A Chain A, Crystal Structure Of Factor Xia In Complex With Clavatadine A Length = 238

Iteration: 1
 Score =  114 bits (284), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/107 (48%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|2ANY|A Chain A, Expression, Crystallization And The Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG  K+ G   + L +V +P+++N EC+K   + +IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  +  +VG+ SWGEGCA+   PGVY +V  Y+ WI   T
Sbjct: 189 GGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKT 235

>pdb|2ANW|A Chain A, Expression, Crystallization And Three-Dimensional Structure Of The Catalytic Domain Of Human Plasma Kallikrein: Implications For Structure-Based Design Of Protease Inhibitors Length = 241

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/107 (46%), Positives = 71/107 (66%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG  K+ G   + L +V +P+++N EC+K   + +IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  +  +VG+ SWGEGCA+   PGVY +V  Y+ WI   T
Sbjct: 189 GGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKT 235

>pdb|1ZHP|A Chain A, Crystal Structure Of The Catalytic Domain Of Coagulation Factor Xi In Complex With Benzamidine (S434a-T475a-K505 Mutant) Length = 238

Iteration: 1
 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 51/107 (47%), Positives = 70/107 (65%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +       +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRALRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>pdb|3VEQ|B Chain B, A Binary Complex Betwwen Bovine Pancreatic Trypsin And A Engineered Mutant Trypsin Inhibitor Length = 223

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  A +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCAGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1F0T|A Chain A, Bovine Trypsin Complexed With Rpr131247 Length = 243

Iteration: 1
 Score =  108 bits (271), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 137 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 195
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 196 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 237

>pdb|1ZZZ|A Chain A, Trypsin Inhibitors With Rigid Tripeptidyl Aldehydes Length = 237

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 131 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 189
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 190 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 231

>pdb|1TAB|E Chain E, Structure Of The Trypsin-Binding Domain Of Bowman-Birk Type Protease Inhibitor And Its Interaction With Trypsin Length = 223

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|2FI4|E Chain E, Crystal Structure Of A Bpti Variant (Cys14->ser) In Complex With Trypsin Length = 223

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1NTP|A Chain A, Use Of The Neutron Diffraction HD EXCHANGE TECHNIQUE TO Determine The Conformational Dynamics Of Trypsin Length = 223

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|3OTJ|E Chain E, A Crystal Structure Of Trypsin Complexed With Bpti (Bovine Pancreatic Trypsin Inhibitor) By X-RayNEUTRON JOINT REFINEMENT Length = 223

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1G3B|A Chain A, Bovine Beta-Trypsin Bound To Meta-Amidino Schiff Base Magnesium(Ii) Chelate Length = 228

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 122 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 180
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 181 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 222

>pdb|1Y59|T Chain T, Dianhydrosugar-Based Benzamidine, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Mutant Length = 223

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1TGS|Z Chain Z, Three-Dimensional Structure Of The Complex Between Pancreatic Secretory Inhibitor (Kazal Type) And Trypsinogen At 1.8 Angstroms Resolution. Structure Solution, Crystallographic Refinement And Preliminary Structural Interpretation Length = 229

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 123 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 181
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 182 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 223

>pdb|3QK1|A Chain A, Crystal Structure Of Enterokinase-Like Trypsin Variant Length = 229

Iteration: 1
 Score =  108 bits (270), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1TAW|A Chain A, Bovine Trypsin Complexed To Appi Length = 223

Iteration: 1
 Score =  108 bits (269), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 54/106 (50%), Positives = 74/106 (69%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS + CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSTSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1MCT|A Chain A, The Refined 1.6 Angstroms Resolution Crystal Structure Of The Complex Formed Between Porcine Beta-trypsin And Mcti-a, A Trypsin Inhibitor Of Squash Family Length = 223

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 107/223 (47%), Gaps = 61/223 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC----VHQGLG---IWVTI 139
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    +   LG   I V  
Sbjct: 1   IVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLE 59
Query: 140 RGKSFSNKTGIVT----------------------------------------------- 152
             + F N   I+T                                               
Sbjct: 60  GNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG  K  GS+  +LL+ ++ P+LSN+ C K++Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSNSSC-KSSYPGQITGNMICVGFLQGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           GP+    +    + G+VSWG GCAQ+N PGVY +V  Y+ WI+
Sbjct: 179 GPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 217

>pdb|1OPH|B Chain B, Non-Covalent Complex Between Alpha-1-Pi-Pittsburgh And S195a Trypsin Length = 243

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 75/106 (70%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 137 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 195
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 196 DAGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 237

>pdb|4AN7|A Chain A, Kunitz Type Trypsin Inhibitor Complex With Porcine Trypsin Length = 231

Iteration: 1
 Score =  107 bits (267), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 75/224 (33%), Positives = 108/224 (48%), Gaps = 61/224 (27%)
Query: 86  RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC----VHQGLG---IWVT 138
           +IVGG     +  P+   L     F CG +LIN+ +V++AAHC    +   LG   I V 
Sbjct: 8   KIVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVL 66
Query: 139 IRGKSFSNKTGIVT---------------------------------------------- 152
              + F N   I+T                                              
Sbjct: 67  EGNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLI 126
Query: 153 -GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
            GWG  K  GS+  +LL+ ++ P+LS++ C K++Y  +IT NM+C G+ +G KDSCQGDS
Sbjct: 127 SGWGNTKSSGSSYPSLLQCLKAPVLSDSSC-KSSYPGQITGNMICVGFLEGGKDSCQGDS 185
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           GGP+    +    + G+VSWG GCAQ+N PGVY +V  Y+ WI+
Sbjct: 186 GGPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 225

>pdb|4DGJ|A Chain A, Structure Of A Human Enteropeptidase Light Chain Variant Length = 235

Iteration: 1
 Score =  107 bits (266), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 67/105 (63%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           + GWG     G+T+D L E +VP+LSN  C++   E  IT NM+CAGY +G  DSCQGDS
Sbjct: 128 IAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGIDSCQGDS 187
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGPL         + GV S+G  CA  N PGVYARV+R+  WI++
Sbjct: 188 GGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQS 232

>pdb|3MYW|A Chain A, The Bowman-Birk Type Inhibitor From Mung Bean In Ternary Complex With Porcine Trypsin Length = 223

Iteration: 1
 Score =  107 bits (266), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 76/223 (34%), Positives = 107/223 (47%), Gaps = 61/223 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC----VHQGLG---IWVTI 139
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    +   LG   I V  
Sbjct: 1   IVGGYTCAANSVPYQVSLNSGSHF-CGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLE 59
Query: 140 RGKSFSNKTGIVT----------------------------------------------- 152
             + F N   I+T                                               
Sbjct: 60  GNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG  K  GS+  +LL+ ++ P+LS++ C K+AY  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSDSSC-KSAYPGQITGNMICVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           GP+    +    + G+VSWG GCAQ+N PGVY +V  Y+ WI+
Sbjct: 179 GPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 217

>pdb|5PTP|A Chain A, Structure Of Hydrolase (Serine Proteinase) Length = 223

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 74/106 (69%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D GGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DXGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|2D8W|A Chain A, Structure Of Hyper-Vil-Trypsin Length = 223

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 74/106 (69%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAG  +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSXPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGXLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1EKB|B Chain B, The Serine Protease Domain Of Enteropeptidase Bound To Inhibitor Val- Asp-asp-asp-asp-lys-chloromethane Length = 235

Iteration: 1
 Score =  106 bits (264), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 53/105 (50%), Positives = 66/105 (62%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           + GWG     GST+D L E +VP+LSN +C++   E  IT NM+CAGY  G  DSCQGDS
Sbjct: 128 IAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGVDSCQGDS 187
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGPL         + GV S+G  CA  N PGVYARV R+  WI++
Sbjct: 188 GGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQS 232

>pdb|1TFX|A Chain A, Complex Of The Second Kunitz Domain Of Tissue Factor Pathway Inhibitor With Porcine Trypsin Length = 223

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 107/223 (47%), Gaps = 61/223 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC----VHQGLG---IWVTI 139
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    +   LG   I V  
Sbjct: 1   IVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLE 59
Query: 140 RGKSFSNKTGIVT----------------------------------------------- 152
             + F N   I+T                                               
Sbjct: 60  GNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG  K  GS+  +LL+ ++ P+LS++ C K++Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSDSSC-KSSYPGQITGNMICVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           GP+    +    + G+VSWG GCAQ+N PGVY +V  Y+ WI+
Sbjct: 179 GPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 217

>pdb|1AN1|E Chain E, Leech-Derived Tryptase InhibitorTRYPSIN COMPLEX Length = 223

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 75/223 (33%), Positives = 107/223 (47%), Gaps = 61/223 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC----VHQGLG---IWVTI 139
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    +   LG   I V  
Sbjct: 1   IVGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLE 59
Query: 140 RGKSFSNKTGIVT----------------------------------------------- 152
             + F N   I+T                                               
Sbjct: 60  GNEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLXSRVATVSLPRSCAAAGTECLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG  K  GS+  +LL+ ++ P+LS++ C K++Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTKSSGSSYPSLLQCLKAPVLSDSSC-KSSYPGQITGNMICVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           GP+    +    + G+VSWG GCAQ+N PGVY +V  Y+ WI+
Sbjct: 179 GPVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 217

>pdb|2A31|A Chain A, Trypsin In Complex With Borate Length = 223

Iteration: 1
 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 74/222 (33%), Positives = 106/222 (47%), Gaps = 61/222 (27%)
Query: 88  VGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC----VHQGLG---IWVTIR 140
           VGG     +  P+   L     F CG +LIN+ +V++AAHC    +   LG   I V   
Sbjct: 2   VGGYTCAANSIPYQVSLNSGSHF-CGGSLINSQWVVSAAHCYKSRIQVRLGEHNIDVLEG 60
Query: 141 GKSFSNKTGIVT-----------------------------------------------G 153
            + F N   I+T                                               G
Sbjct: 61  NEQFINAAKIITHPNFNGNTLDNDIMLIKLSSPATLNSRVATVSLPRSCAAAGTECLISG 120
Query: 154 WGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGG 212
           WG  K  GS+  +LL+ ++ P+LS++ C K++Y  +IT NM+C G+ +G KDSCQGDSGG
Sbjct: 121 WGNTKSSGSSYPSLLQCLKAPVLSDSSC-KSSYPGQITGNMICVGFLEGGKDSCQGDSGG 179
Query: 213 PLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           P+    +    + G+VSWG GCAQ+N PGVY +V  Y+ WI+
Sbjct: 180 PVVCNGQ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 217

>pdb|1KIG|H Chain H, Bovine Factor Xa Length = 241

Iteration: 1
 Score =  103 bits (256), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 50/110 (45%), Positives = 70/110 (63%), Gaps = 1/110 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S TL  +EVP +  + CK ++    ITPNM CAGY    +
Sbjct: 120 MTQKTGIVSGFGRTHEKGRLSSTLKMLEVPYVDRSTCKLSS-SFTITPNMFCAGYDTQPE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           D+CQGDSGGP     +  + + G+VSWGEGCA++   GVY +V+ +L WI
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKFGVYTKVSNFLKWI 228

>pdb|1TRN|A Chain A, Crystal Structure Of Human Trypsin 1: Unexpected Phosphorylation Of Tyrosine 151 Length = 224

Iteration: 1
 Score =  102 bits (253), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 71/224 (31%), Positives = 100/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN  +V++A HC    + + +         
Sbjct: 1   IVGGYNCEENSVPYQVSLNSGYHF-CGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      IR   +  KT                                    +++
Sbjct: 60  GNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINARVSTISLPTAPPATGTKCLIS 119
Query: 153 GWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G    D L  ++ P+LS A+C+  +Y  +IT NM C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTASSGADXPDELQCLDAPVLSQAKCE-ASYPGKITSNMFCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    +    + GVVSWG+GCAQ+N PGVY +V  Y+ WIKN
Sbjct: 179 GPVVCNGQ----LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKN 218

>pdb|1A0J|A Chain A, Crystal Structure Of A Non-Psychrophilic Trypsin From A Cold-Adapted Fish Species. Length = 223

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 55/109 (50%), Positives = 73/109 (66%), Gaps = 10/109 (9%)
Query: 150 IVTGWGVQKQGGSTS---DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
           +V+GWG     GS+S   DTL  +++PILS++ C  +AY  +IT NM CAG+ +G KDSC
Sbjct: 117 LVSGWG--NLSGSSSNYPDTLRCLDLPILSSSSCN-SAYPGQITSNMFCAGFMEGGKDSC 173
Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           QGDSGGP+    +    + GVVSWG GCAQ N PGVY +V  Y +WI +
Sbjct: 174 QGDSGGPVVCNGQ----LQGVVSWGYGCAQRNKPGVYTKVCNYRSWISS 218

>pdb|3I77|A Chain A, 3599170-Loops Of Fxa In Sgt Length = 230

Iteration: 1
 Score =  100 bits (249), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 69/225 (30%), Positives = 100/225 (44%), Gaps = 56/225 (24%)
Query: 87  IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHC----------------- 128
           +VGG      ++P+M  L+ ++   +CG  L     VLTAAHC                 
Sbjct: 1   VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVV 60
Query: 129 --------------VHQGLGI--------WVTIR--------------GKSFSNKTGIVT 152
                         V Q  G         W  I+                +++  T  V 
Sbjct: 61  DLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVA 120
Query: 153 GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPK-GEKDSCQGDSG 211
           GWG  ++GGS    LL+  VP +S+A C+ ++    +   M+CAGYP  G  D+CQGDSG
Sbjct: 121 GWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYPDTGGVDTCQGDSG 180
Query: 212 GPLHYANETVHHI-VGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+   +     I VG+VSWG GCA+  YPGVY  V+ + + I +
Sbjct: 181 GPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 225

>pdb|2RA3|A Chain A, Human Cationic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (bpti) Length = 224

Iteration: 1
 Score =  100 bits (249), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 100/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN  +V++A HC    + + +         
Sbjct: 1   IVGGYNCEENSVPYQVSLNSGYHF-CGGSLINEQWVVSAGHCYKSRIQVRLGEHNIEVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      IR   +  KT                                    +++
Sbjct: 60  GNEQFINAAKIIRHPQYDRKTLNNDIMLIKLSSRAVINAHVSTISLPTAPPATGTKCLIS 119
Query: 153 GWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G    D L  ++ P+LS A+C+  +Y  +IT NM C G+ +G KDSCQGD+G
Sbjct: 120 GWGNTASSGADYPDELQCLDAPVLSQAKCE-ASYPGKITSNMFCVGFLEGGKDSCQGDAG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    +    + GVVSWG+GCAQ+N PGVY +V  Y+ WIKN
Sbjct: 179 GPVVCNGQ----LQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKN 218

>pdb|1XVM|A Chain A, Trypsin From Fusarium Oxysporum- Room Temperature To Atomic Resolution Length = 224

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 8/141 (5%)
Query: 118 NNLYVLTAAHCVHQGLGIWVTIRGKSFSN----KTGIVTGWGVQKQGGSTSD-TLLEVEV 172
           N+L +L  +  +  G  I       S S+     +  V GWG   +GGS++   LL+V V
Sbjct: 83  NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTV 142
Query: 173 PILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE 232
           PI+S A C+     + IT  M CAG   G KDSCQGDSGGP+  ++ T   ++G VSWG 
Sbjct: 143 PIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSSNT---LIGAVSWGN 199
Query: 233 GCAQENYPGVYARVNRYLTWI 253
           GCA+ NY GVYA V    ++I
Sbjct: 200 GCARPNYSGVYASVGALRSFI 220

>pdb|1GDU|A Chain A, Fusarium Oxysporum Trypsin At Atomic Resolution Length = 224

Iteration: 1
 Score = 99.8 bits (247), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 58/141 (41%), Positives = 79/141 (56%), Gaps = 8/141 (5%)
Query: 118 NNLYVLTAAHCVHQGLGIWVTIRGKSFSN----KTGIVTGWGVQKQGGSTSD-TLLEVEV 172
           N+L +L  +  +  G  I       S S+     +  V GWG   +GGS++   LL+V V
Sbjct: 83  NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTV 142
Query: 173 PILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE 232
           PI+S A C+     + IT  M CAG   G KDSCQGDSGGP+  ++ T   ++G VSWG 
Sbjct: 143 PIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSGGPIVDSSNT---LIGAVSWGN 199
Query: 233 GCAQENYPGVYARVNRYLTWI 253
           GCA+ NY GVYA V    ++I
Sbjct: 200 GCARPNYSGVYASVGALRSFI 220

>pdb|1RJX|B Chain B, Human Plasminogen Catalytic Domain, K698m Mutant Length = 247

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 68/106 (64%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L+E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 137 FITGWG-ETQGTFGAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 196 DSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 241

>pdb|1PPZ|A Chain A, Trypsin Complexes At Atomic And Ultra-High Resolution Length = 224

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 57/141 (40%), Positives = 78/141 (55%), Gaps = 8/141 (5%)
Query: 118 NNLYVLTAAHCVHQGLGIWVTIRGKSFSN----KTGIVTGWGVQKQGGSTSD-TLLEVEV 172
           N+L +L  +  +  G  I       S S+     +  V GWG   +GGS++   LL+V V
Sbjct: 83  NDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTV 142
Query: 173 PILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE 232
           PI+S A C+     + IT  M CAG   G KDSCQGD GGP+  ++ T   ++G VSWG 
Sbjct: 143 PIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDXGGPIVDSSNT---LIGAVSWGN 199
Query: 233 GCAQENYPGVYARVNRYLTWI 253
           GCA+ NY GVYA V    ++I
Sbjct: 200 GCARPNYSGVYASVGALRSFI 220

>pdb|1SGT|A Chain A, Refined Crystal Structure Of Streptomyces Griseus Trypsin At 1.7 Angstroms Resolution Length = 223

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 99/223 (44%), Gaps = 59/223 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV----------------- 129
           +VGG      ++P+M  L       CG  L     VLTAAHCV                 
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 130 -------------------HQGLGI-WVTIR--------------GKSFSNKTGIVTGWG 155
                              + G G  W  I+                +++  T  V GWG
Sbjct: 57  LQSGAAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGWG 116
Query: 156 VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN-MLCAGYPK-GEKDSCQGDSGGP 213
             ++GGS    LL+  VP +S+A C ++AY N +  N  +CAGYP  G  D+CQGDSGGP
Sbjct: 117 ANREGGSQQRYLLKANVPFVSDAAC-RSAYGNELVANEEICAGYPDTGGVDTCQGDSGGP 175
Query: 214 LHYANETVHHI-VGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           +   +     I VG+VSWG GCA+  YPGVY  V+ + + I +
Sbjct: 176 MFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218

>pdb|3I78|A Chain A, 3599170186220-Loops Of Fxa In Sgt Length = 229

Iteration: 1
 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 100/224 (44%), Gaps = 55/224 (24%)
Query: 87  IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHC----------------- 128
           +VGG      ++P+M  L+ ++   +CG  L     VLTAAHC                 
Sbjct: 1   VVGGTRAAQGEFPFMVRLINEENEGFCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVV 60
Query: 129 --------------VHQGLGI--------WVTIR--------------GKSFSNKTGIVT 152
                         V Q  G         W  I+                +++  T  V 
Sbjct: 61  DLQSSSAVKVRSTKVLQAPGFTKETYGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVA 120
Query: 153 GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGG 212
           GWG  ++GGS    LL+  VP +S+A C+ ++    +   M+CAGY   ++D+CQGDSGG
Sbjct: 121 GWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQEDTCQGDSGG 180
Query: 213 PLHYANETVHHI-VGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           P+   +     + VG+VSWGEGCA++   GVY  V+ + + I +
Sbjct: 181 PMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 224

>pdb|1OS8|A Chain A, Recombinant Streptomyces Griseus Trypsin Length = 223

Iteration: 1
 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 99/223 (44%), Gaps = 59/223 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV----------------- 129
           +VGG      ++P+M  L       CG  L     VLTAAHCV                 
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 130 -------------------HQGLGI-WVTIR--------------GKSFSNKTGIVTGWG 155
                              + G G  W  I+                +++  T  V GWG
Sbjct: 57  LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGWG 116
Query: 156 VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN-MLCAGYPK-GEKDSCQGDSGGP 213
             ++GGS    LL+  VP +S+A C ++AY N +  N  +CAGYP  G  D+CQGDSGGP
Sbjct: 117 ANREGGSQQRYLLKANVPFVSDAAC-RSAYGNELVANEEICAGYPDTGGVDTCQGDSGGP 175
Query: 214 LHYANETVHHI-VGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           +   +     I VG+VSWG GCA+  YPGVY  V+ + + I +
Sbjct: 176 MFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218

>pdb|1CO7|E Chain E, R117h Mutant Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 245

Iteration: 1
 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 104/230 (45%), Gaps = 61/230 (26%)
Query: 81  VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--- 137
           V+   +IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +   
Sbjct: 17  VDDDDKIVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEH 75
Query: 138 ----------------TIRGKSFSNKT--------------------------------- 148
                            I+  +F  KT                                 
Sbjct: 76  NINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNAHVATVALPSSCAPAG 135
Query: 149 --GIVTGWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
              +++GWG     G     LL+ ++ P+L  A+C+ + Y  +IT NM+C G+ +G KDS
Sbjct: 136 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS-YPGKITDNMVCVGFLEGGKDS 194
Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           CQGDSGGP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 195 CQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 240

>pdb|1FAX|A Chain A, Coagulation Factor Xa Inhibitor Complex Length = 254

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|1EZQ|A Chain A, Crystal Structure Of Human Coagulation Factor Xa Complexed With Rpr128515 Length = 254

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|1XKA|C Chain C, Factor Xa Complexed With A Synthetic Inhibitor Fx-2212a,(2s)-(3'- Amidino-3-Biphenylyl)-5-(4-Pyridylamino)pentanoic Acid Length = 235

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|1C5M|D Chain D, Structural Basis For Selectivity Of A Small Molecule, S1- Binding, Sub-Micromolar Inhibitor Of Urokinase Type Plasminogen Activator Length = 255

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|1FJS|A Chain A, Crystal Structure Of The Inhibitor Zk-807834 (Ci-1031) Complexed With Factor Xa Length = 234

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|1MQ5|A Chain A, Crystal Structure Of 3-chloro-n-[4-chloro-2-[[(4-chlorophenyl) Amino]carbonyl]phenyl]-4-[(4-methyl-1- piperazinyl)methyl]-2- Thiophenecarboxamide Complexed With Human Factor Xa Length = 233

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|3ENS|B Chain B, Crystal Structure Of Human Fxa In Complex With Methyl (2z)-3-[(3- Chloro-1h-indol-7-yl)amino]-2-cyano-3-{[(3s)-2-oxo-1-(2- oxo-2- Pyrrolidin-1-ylethyl)azepan-3-yl]amino}acrylate Length = 238

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|2Y5F|A Chain A, Factor Xa - Cation Inhibitor Complex Length = 234

Iteration: 1
 Score = 97.4 bits (241), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|2BOK|A Chain A, Factor Xa- Cation Length = 241

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|1HCG|A Chain A, Structure Of Human Des(1-45) Factor Xa At 2.2 Angstroms Resolution Length = 241

Iteration: 1
 Score = 97.1 bits (240), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|1OSS|A Chain A, T190p Streptomyces Griseus Trypsin In Complex With Benzamidine Length = 223

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 72/223 (32%), Positives = 98/223 (43%), Gaps = 59/223 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV----------------- 129
           +VGG      ++P+M  L       CG  L     VLTAAHCV                 
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 130 -------------------HQGLGI-WVTIR--------------GKSFSNKTGIVTGWG 155
                              + G G  W  I+                +++  T  V GWG
Sbjct: 57  LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGWG 116
Query: 156 VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN-MLCAGYPK-GEKDSCQGDSGGP 213
             ++GGS    LL+  VP +S+A C ++AY N +  N  +CAGYP  G  D CQGDSGGP
Sbjct: 117 ANREGGSQQRYLLKANVPFVSDAAC-RSAYGNELVANEEICAGYPDTGGVDPCQGDSGGP 175
Query: 214 LHYANETVHHI-VGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           +   +     I VG+VSWG GCA+  YPGVY  V+ + + I +
Sbjct: 176 MFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIAS 218

>pdb|3BN9|B Chain B, Crystal Structure Of Mt-Sp1 In Complex With Fab Inhibitor E2 Length = 241

Iteration: 1
 Score = 97.1 bits (240), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 16/145 (11%)
Query: 114 ATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVP 173
           ++++  + +  A+H    G  IWVT              GWG  + GG+ +  L + E+ 
Sbjct: 110 SSMVRPISLPDASHVFPAGKAIWVT--------------GWGHTQYGGTGALILQKGEIR 155
Query: 174 ILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHI-VGVVSWGE 232
           +++   C+      +ITP M+C G+  G  DSCQGDSGGPL            GVVSWG+
Sbjct: 156 VINQTTCENL-LPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGD 214
Query: 233 GCAQENYPGVYARVNRYLTWIKNNT 257
           GCAQ N PGVY R+  +  WIK NT
Sbjct: 215 GCAQRNKPGVYTRLPLFRDWIKENT 239

>pdb|2BQ6|B Chain B, Crystal Structure Of Factor Xa In Complex With 21 Length = 249

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 135 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 193
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 194 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 246

>pdb|3TGJ|E Chain E, S195a Trypsinogen Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 233

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 104/230 (45%), Gaps = 61/230 (26%)
Query: 81  VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--- 137
           V+   +IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +   
Sbjct: 5   VDDDDKIVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEH 63
Query: 138 ----------------TIRGKSFSNKT--------------------------------- 148
                            I+  +F  KT                                 
Sbjct: 64  NINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAG 123
Query: 149 --GIVTGWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
              +++GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDS
Sbjct: 124 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDS 182
Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           CQGD+GGP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 183 CQGDAGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 228

>pdb|2FMJ|A Chain A, 220-Loop Mutant Of Streptomyces Griseus Trypsin Length = 222

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/222 (31%), Positives = 98/222 (44%), Gaps = 58/222 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV----------------- 129
           +VGG      ++P+M  L       CG  L     VLTAAHCV                 
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56
Query: 130 -------------------HQGLGI-WVTIR--------------GKSFSNKTGIVTGWG 155
                              + G G  W  I+                +++  T  V GWG
Sbjct: 57  LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGWG 116
Query: 156 VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNM-LCAGYPKGEKDSCQGDSGGPL 214
             ++GGS    LL+  VP +S+A C+ +AY N +  N  +CAGY  G  D+CQGDSGGP+
Sbjct: 117 ANREGGSQQRYLLKANVPFVSDAACR-SAYGNELVANEEICAGYDTGGVDTCQGDSGGPM 175
Query: 215 HYANETVHHI-VGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
              +     I VG+VSWGEGCA++   GVY  V+ + + I +
Sbjct: 176 FRKDNADEWIQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 217

>pdb|3UIR|A Chain A, Crystal Structure Of The Plasmin-Textilinin-1 Complex Length = 247

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 137 FITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 196 DSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 241

>pdb|1BUI|B Chain B, Structure Of The Ternary Microplasmin-Staphylokinase-Microplasmin Complex: A Proteinase-Cofactor-Substrate Complex In Action Length = 250

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 140 FITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 198
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 199 DSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 244

>pdb|1EAW|A Chain A, Crystal Structure Of The Mtsp1 (Matriptase)-Bpti (Aprotinin) Complex Length = 241

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 76/145 (52%), Gaps = 16/145 (11%)
Query: 114 ATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVP 173
           ++++  + +  A+H    G  IWVT              GWG  + GG+ +  L + E+ 
Sbjct: 110 SSMVRPICLPDASHVFPAGKAIWVT--------------GWGHTQYGGTGALILQKGEIR 155
Query: 174 ILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHI-VGVVSWGE 232
           +++   C+      +ITP M+C G+  G  DSCQGDSGGPL            GVVSWG+
Sbjct: 156 VINQTTCENL-LPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGD 214
Query: 233 GCAQENYPGVYARVNRYLTWIKNNT 257
           GCAQ N PGVY R+  +  WIK NT
Sbjct: 215 GCAQRNKPGVYTRLPLFRDWIKENT 239

>pdb|1QRZ|A Chain A, Catalytic Domain Of Plasminogen Length = 246

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 136 FITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 194
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 195 DSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 240

>pdb|1F7Z|A Chain A, Rat Trypsinogen K15a Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 233

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 103/230 (44%), Gaps = 61/230 (26%)
Query: 81  VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--- 137
           V+    IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +   
Sbjct: 5   VDDDDAIVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEH 63
Query: 138 ----------------TIRGKSFSNKT--------------------------------- 148
                            I+  +F  KT                                 
Sbjct: 64  NINVLEGNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAG 123
Query: 149 --GIVTGWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
              +++GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDS
Sbjct: 124 TQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDS 182
Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           CQGDSGGP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 183 CQGDSGGPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 228

>pdb|3P8G|A Chain A, Crystal Structure Of Mt-Sp1 In Complex With Benzamidine Length = 241

Iteration: 1
 Score = 96.3 bits (238), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/145 (37%), Positives = 75/145 (51%), Gaps = 16/145 (11%)
Query: 114 ATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVP 173
           ++++  + +  A+H    G  IWVT              GWG  + GG+ +  L + E+ 
Sbjct: 110 SSMVRPICLPDASHVFPAGKAIWVT--------------GWGHTQYGGTGALILQKGEIR 155
Query: 174 ILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHI-VGVVSWGE 232
           ++    C+      +ITP M+C G+  G  DSCQGDSGGPL            GVVSWG+
Sbjct: 156 VIQQTTCENL-LPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGD 214
Query: 233 GCAQENYPGVYARVNRYLTWIKNNT 257
           GCAQ N PGVY R+  +  WIK NT
Sbjct: 215 GCAQRNKPGVYTRLPLFRDWIKENT 239

>pdb|2GD4|H Chain H, Crystal Structure Of The Antithrombin-S195a Factor Xa-Pentasaccharide Complex Length = 241

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/113 (40%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK ++    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLSS-SFIITQNMFCAGYDTKQE 178
Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           D+CQGD+GGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 179 DACQGDAGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>pdb|2WPH|S Chain S, Factor Ixa Superactive Triple Mutant Length = 235

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 148 TGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
           +G V+GWG     G ++  L  + VP++  A C ++  +  IT NM CAG+ +G +DSCQ
Sbjct: 124 SGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRST-KFTITNNMFCAGFHEGGRDSCQ 182
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GDSGGP     E    + G++SWGE CA +   G+Y +V+RY+ WIK  T
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>pdb|2WPI|S Chain S, Factor Ixa Superactive Double Mutant Length = 235

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 148 TGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
           +G V+GWG     G ++  L  + VP++  A C ++  +  IT NM CAG+ +G +DSCQ
Sbjct: 124 SGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRST-KFTITNNMFCAGFHEGGRDSCQ 182
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GDSGGP     E    + G++SWGE CA +   G+Y +V+RY+ WIK  T
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>pdb|1HJ9|A Chain A, Atomic Resolution Structures Of Trypsin Provide Insight Into Structural Radiation Damage Length = 223

Iteration: 1
 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CA   +G+ DSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAYGLEGKGDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GC  +N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCQAKNKPGVYTKVCNYVSWIK 217

>pdb|1DDJ|A Chain A, Crystal Structure Of Human Plasminogen Catalytic Domain Length = 247

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 137 FITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 195
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 196 DAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 241

>pdb|1L4Z|A Chain A, X-Ray Crystal Structure Of The Complex Of Microplasminogen With Alpha Domain Of Streptokinase In The Presence Cadmium Ions Length = 248

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 138 FITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 197 DAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 242

>pdb|1BML|A Chain A, Complex Of The Catalytic Domain Of Human Plasmin And Streptokinase Length = 250

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 140 FITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 198
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 199 DAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 244

>pdb|1L4D|A Chain A, Crystal Structure Of Microplasminogen-streptokinase Alpha Domain Complex Length = 249

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 139 FITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 197
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 198 DAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 243

>pdb|1Z8G|A Chain A, Crystal Structure Of The Extracellular Region Of The Transmembrane Serine Protease Hepsin With Covalently Bound Preferred Substrate Length = 372

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 147 KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECK-KTAYENRITPNMLCAGYPKGEKDS 205
           K   VTGWG  +  G  +  L E  VPI+SN  C     Y N+I P M CAGYP+G  D+
Sbjct: 244 KICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDA 303
Query: 206 CQGDSGGPLHYANETVH----HIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           CQGDSGGP    +         + G+VSWG GCA    PGVY +V+ +  WI
Sbjct: 304 CQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 355

>pdb|3T2N|A Chain A, Human Hepsin Protease In Complex With The Fab Fragment Of An Inhibitory Antibody Length = 372

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 147 KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECK-KTAYENRITPNMLCAGYPKGEKDS 205
           K   VTGWG  +  G  +  L E  VPI+SN  C     Y N+I P M CAGYP+G  D+
Sbjct: 244 KICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDA 303
Query: 206 CQGDSGGPLHYANETVH----HIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           CQGDSGGP    +         + G+VSWG GCA    PGVY +V+ +  WI
Sbjct: 304 CQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 355

>pdb|2WPM|S Chain S, Factor Ixa Superactive Mutant, Egr-Cmk Inhibited Length = 235

Iteration: 1
 Score = 95.5 bits (236), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 148 TGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
           +G V+GWG     G  +  L  + VP++  A C ++  +  IT NM CAG+ +G +DSCQ
Sbjct: 124 SGYVSGWGRVFHKGRAALVLQYLRVPLVDRATCLRST-KFTITNNMFCAGFHEGGRDSCQ 182
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GDSGGP     E    + G++SWGE CA +   G+Y +V+RY+ WIK  T
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>pdb|3BEU|A Chain A, Na+-Dependent Allostery Mediates Coagulation Factor Protease Active Site Selectivity Length = 224

Iteration: 1
 Score = 95.1 bits (235), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/114 (38%), Positives = 70/114 (61%), Gaps = 1/114 (0%)
Query: 143 SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           +++  T  V GWG  ++GGS    LL+  VP +S+A C+ ++    +   M+CAGY   +
Sbjct: 106 AYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDTKQ 165
Query: 203 KDSCQGDSGGPLHYANETVHHI-VGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           +D+CQGDSGGP+   +     + VG+VSWGEGCA++   GVY  V+ + + I +
Sbjct: 166 EDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIAS 219

>pdb|1O5E|H Chain H, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (ala190 Upa) Length = 255

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 62/112 (55%), Gaps = 5/112 (4%)
Query: 147 KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDS 205
           K   VTGWG  +  G  +  L E  VPI+SN  C     Y N+I P M CAGYP+G  D+
Sbjct: 127 KICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDA 186
Query: 206 CQGDSGGPLHYANETVH----HIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           CQGDSGGP    +         + G+VSWG GCA    PGVY +V+ +  WI
Sbjct: 187 CQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWI 238

>pdb|4DUR|A Chain A, The X-Ray Crystal Structure Of Full-Length Type Ii Human Plasminogen Length = 791

Iteration: 1
 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 67/106 (63%), Gaps = 2/106 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
            +TGWG + QG   +  L E ++P++ N  C +  + N R+    LCAG+  G  DSCQG
Sbjct: 681 FITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQG 739
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+
Sbjct: 740 DSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIE 785

>pdb|1AND|A Chain A, Anionic Trypsin Mutant With Arg 96 Replaced By His Length = 223

Iteration: 1
 Score = 94.7 bits (234), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 102/224 (45%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F +KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDHKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+ + Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS-YPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1YBW|A Chain A, Protease Domain Of Hgfa With No Inhibitor Length = 283

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRITPNMLCAGYPKGEKDSCQG 208
           + GWG + +     S +L E  VP++++ +C     Y   I+PNMLCAGY   + D+CQG
Sbjct: 165 IAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 224
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           DSGGPL      V ++ G++SWG+GC + + PGVY RV  Y+ WI + 
Sbjct: 225 DSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 272

>pdb|1PFX|C Chain C, Porcine Factor Ixa Length = 235

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/110 (41%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 148 TGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
           +G V+GWG     G ++  L  ++VP++  A C ++  +  I  NM CAG+ +G KDSCQ
Sbjct: 124 SGYVSGWGRVFNRGRSATILQYLKVPLVDRATCLRST-KFTIYSNMFCAGFHEGGKDSCQ 182
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GDSGGP     E    + G++SWGE CA +   G+Y +V+RY+ WIK  T
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAVKGKYGIYTKVSRYVNWIKEKT 232

>pdb|2WUB|A Chain A, Crystal Structure Of Hgfa In Complex With The Allosteric Non-Inhibitory Antibody Fab40.Deltatrp Length = 257

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRITPNMLCAGYPKGEKDSCQG 208
           + GWG + +     S +L E  VP++++ +C     Y   I+PNMLCAGY   + D+CQG
Sbjct: 130 IAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 189
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           DSGGPL      V ++ G++SWG+GC + + PGVY RV  Y+ WI + 
Sbjct: 190 DSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 237

>pdb|2R0L|A Chain A, Short Form Hgfa With Inhibitory Fab75 Length = 248

Iteration: 1
 Score = 94.4 bits (233), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRITPNMLCAGYPKGEKDSCQG 208
           + GWG + +     S +L E  VP++++ +C     Y   I+PNMLCAGY   + D+CQG
Sbjct: 130 IAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 189
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           DSGGPL      V ++ G++SWG+GC + + PGVY RV  Y+ WI + 
Sbjct: 190 DSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR 237

>pdb|2OQ5|A Chain A, Crystal Structure Of Desc1, A New Member Of The Type Ii Transmembrane Serine Proteinases Family Length = 232

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 47/110 (42%), Positives = 68/110 (61%), Gaps = 2/110 (1%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRITPNMLCAGYPKGEKDSCQG 208
            VTG+G  K  G + + L + +V ++    C +  AY + ITP MLCAG  +G+ D+CQG
Sbjct: 121 FVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKTDACQG 180
Query: 209 DSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  ++   + ++ G+VSWG+ CA+ N PGVY RV     WI + T
Sbjct: 181 DSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230

>pdb|1EZS|C Chain C, Crystal Structure Of Ecotin Mutant M84r, W67a, G68a, Y69a, D70a Bound To Rat Anionic Trypsin Ii Length = 223

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GDEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|3TGI|E Chain E, Wild-Type Rat Anionic Trypsin Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 223

Iteration: 1
 Score = 94.4 bits (233), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1EPT|C Chain C, Refined 1.8 Angstroms Resolution Crystal Structure Of Porcine Epsilon-Trypsin Length = 98

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 68/95 (71%), Gaps = 6/95 (6%)
Query: 161 GSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANE 219
           GS+  +LL+ ++ P+LSN+ C K++Y  +IT NM+C G+ +G KDSCQGDSGGP+    +
Sbjct: 3   GSSYPSLLQCLKAPVLSNSSC-KSSYPGQITGNMICVGFLQGGKDSCQGDSGGPVVCNGQ 61
Query: 220 TVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
               + G+VSWG GCAQ+N PGVY +V  Y+ WI+
Sbjct: 62  ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 92

>pdb|1TRM|A Chain A, The Three-Dimensional Structure Of Asn102 Mutant Of Trypsin. Role Of Asp102 In Serine Protease Catalysis Length = 223

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNNIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1V2S|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssfi.Glu)bt.D1 Length = 223

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWGEGCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1SLW|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Nickel- Bound Length = 223

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATIALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGHTLSSGVNHPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1SLX|B Chain B, Rat Anionic N143h, E151h Trypsin Complexed To A86h Ecotin; Zinc-Bound Length = 223

Iteration: 1
 Score = 94.0 bits (232), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 67/224 (29%), Positives = 101/224 (45%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+ + Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGHTLSSGVNHPDLLQCLDAPLLPQADCEAS-YPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1RFN|A Chain A, Human Coagulation Factor Ixa In Complex With P-Amino Benzamidine Length = 235

Iteration: 1
 Score = 93.6 bits (231), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 148 TGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
           +G V+GWG     G ++  L  + VP++  A C ++  +  I  NM CAG+ +G +DSCQ
Sbjct: 124 SGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRST-KFTIYNNMFCAGFHEGGRDSCQ 182
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GDSGGP     E    + G++SWGE CA +   G+Y +V+RY+ WIK  T
Sbjct: 183 GDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>pdb|1DAN|H Chain H, Complex Of Active Site Inhibited Human Blood Coagulation Factor Viia With Human Recombinant Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 10/124 (8%)
Query: 142 KSFSNKT------GIVTGWGVQKQGGSTSDTLLEVEVPILSNAEC----KKTAYENRITP 191
           ++FS +T       +V+GWG     G+T+  L+ + VP L   +C    +K      IT 
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITE 173
Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLT 251
            M CAGY  G KDSC+GDSGGP         ++ G+VSWG+GCA   + GVY RV++Y+ 
Sbjct: 174 YMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIE 233
Query: 252 WIKN 255
           W++ 
Sbjct: 234 WLQK 237

>pdb|1K9O|E Chain E, Crystal Structure Of Michaelis Serpin-Trypsin Complex Length = 223

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 101/224 (45%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGD+G
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDAG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1V2J|T Chain T, Benzamidine In Complex With Bovine Trypsin Variant X(Ssri) Bt.C1 Length = 223

Iteration: 1
 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSRIITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1FIZ|A Chain A, Three Dimensional Structure Of Beta-Acrosin From Boar Spermatozoa Length = 263

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 70/120 (58%), Gaps = 4/120 (3%)
Query: 141 GKSFSNKTGIVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGY 198
           G   + +T  VTGWG ++++G  TS TL E  V ++    C  T + N RI    +CAGY
Sbjct: 128 GPPRAPQTCWVTGWGYLKEKGPRTSPTLQEARVALIDLELCNSTRWYNGRIRSTNVCAGY 187
Query: 199 PKGEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           P+G+ D+CQGDSGGPL   +  E    +VG+ SWG GCA+   PGVY     YL WI + 
Sbjct: 188 PRGKIDTCQGDSGGPLMCRDRAENTFVVVGITSWGVGCARAKRPGVYTSTWPYLNWIASK 247

>pdb|1V2K|T Chain T, Factor Xa Specific Inhibitor In Complex With Bovine Trypsin Variant X(Triple.Glu)bt.D2 Length = 223

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 73/106 (68%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWGEGCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1ANC|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Lys Length = 223

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+V WG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVKWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1ANB|A Chain A, Anionic Trypsin Mutant With Ser 214 Replaced By Glu Length = 223

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+V WG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVEWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1V2U|T Chain T, Benzamidine In Complex With Bovine Trypsin Varinat X(Ssai) Bt.D1 Length = 223

Iteration: 1
 Score = 92.8 bits (229), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSAIITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|2TLD|E Chain E, Crystal Structure Of An Engineered Subtilisin Inhibitor Complexed With Bovine Trypsin Length = 220

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 9/106 (8%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++ CK +AY  +IT NM CAG   G  DSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSSCK-SAYPGQITSNMFCAGLEGG--DSCQG 173
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCA+ N PGVY +V  Y++WIK
Sbjct: 174 DSGGPVVCSGK----LQGIVSWGSGCAK-NKPGVYTKVCNYVSWIK 214

>pdb|1DPO|A Chain A, Structure Of Rat Trypsin Length = 223

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+ + Y  +IT NM+C G+ +G KDSCQGD G
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS-YPGKITDNMVCVGFLEGGKDSCQGDCG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|3KCG|H Chain H, Crystal Structure Of The Antithrombin-Factor Ixa- Pentasaccharide Complex Length = 235

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/110 (40%), Positives = 66/110 (60%), Gaps = 1/110 (0%)
Query: 148 TGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
           +G V+GWG     G ++  L  + VP++  A C ++  +  I  NM CAG+ +G +DSCQ
Sbjct: 124 SGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRST-KFTIYNNMFCAGFHEGGRDSCQ 182
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GD+GGP     E    + G++SWGE CA +   G+Y +V+RY+ WIK  T
Sbjct: 183 GDAGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>pdb|3PWB|A Chain A, Bovine Trypsin Variant X(Tripleglu217ile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWGEGCAQ+N PG+Y +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGEGCAQKNKPGIYTKVCNYVSWIK 217

>pdb|2EEK|A Chain A, Crystal Structure Of Atlantic Cod Trypsin Complexed With Benzamidine Length = 220

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/105 (46%), Positives = 67/105 (63%), Gaps = 5/105 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      +  D L  + +PILS+A+C  + Y   IT +M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSVADGDKLQCLSLPILSHADCANS-YPGMITQSMFCAGYLEGGKDSCQGDS 176
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGP+   N  +    GVVSWG GCA+ ++PGVYA+V     W+++
Sbjct: 177 GGPV-VCNGVLQ---GVVSWGYGCAERDHPGVYAKVCVLSGWVRD 217

>pdb|1FY8|E Chain E, Crystal Structure Of The Deltaile16val17 Rat Anionic Trypsinogen-Bpti Complex Length = 231

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 61/222 (27%)
Query: 89  GGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV----------- 137
           GG     +  P+   L     F CG +LIN+ +V++AAHC    + + +           
Sbjct: 11  GGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGN 69
Query: 138 --------TIRGKSFSNKT-----------------------------------GIVTGW 154
                    I+  +F  KT                                    +++GW
Sbjct: 70  EQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGW 129
Query: 155 GVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGP 213
           G     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGDSGGP
Sbjct: 130 GNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDSGGP 188
Query: 214 LHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           +    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 189 VVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226

>pdb|1UHB|B Chain B, Crystal Structure Of Porcine Alpha Trypsin Bound With Auto Catalyticaly Produced Native Peptide At 2.15 A Resolution Length = 98

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/95 (48%), Positives = 68/95 (71%), Gaps = 6/95 (6%)
Query: 161 GSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANE 219
           GS+  +LL+ ++ P+LS++ C K++Y  +IT NM+C G+ +G KDSCQGDSGGP+    +
Sbjct: 3   GSSYPSLLQCLKAPVLSDSSC-KSSYPGQITGNMICVGFLEGGKDSCQGDSGGPVVCNGQ 61
Query: 220 TVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
               + G+VSWG GCAQ+N PGVY +V  Y+ WI+
Sbjct: 62  ----LQGIVSWGYGCAQKNKPGVYTKVCNYVNWIQ 92

>pdb|1V2O|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Ssyi)bt.B4 Length = 223

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSYIITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1QL9|A Chain A, Factor Xa Specific Inhibitor In Complex With Rat Trypsin Mutant X99rt Length = 223

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/224 (31%), Positives = 100/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC----VHQGLG---IWVTI 139
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    +   LG   I V  
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 140 RGKSFSNKTGIV-----------------------------------------------T 152
             + F N   I+                                               +
Sbjct: 60  GNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+ + Y  +IT NM+C G+ +G KDSCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS-YPGKITDNMVCVGFLEGGKDSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|1AMH|A Chain A, Uncomplexed Rat Trypsin Mutant With Asp 189 Replaced With Ser (D189s) Length = 223

Iteration: 1
 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 66/224 (29%), Positives = 100/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G K SCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKSSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|3ELA|H Chain H, Crystal Structure Of Active Site Inhibited Coagulation Factor Viia Mutant In Complex With Soluble Tissue Factor Length = 254

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 69/124 (55%), Gaps = 10/124 (8%)
Query: 142 KSFSNKT------GIVTGWGVQKQGGSTSDTLLEVEVPILSNAEC----KKTAYENRITP 191
           ++FS +T       +V+GWG     G+T+  L  + VP L   +C    +K      IT 
Sbjct: 114 RTFSERTLAFVRFSLVSGWGQLLDRGATALVLQVLNVPRLMTQDCLQQSRKVGDSPNITE 173
Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLT 251
            M CAGY  G KDSC+GDSGGP         ++ G+VSWG+GCA   + GVY RV++Y+ 
Sbjct: 174 YMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIE 233
Query: 252 WIKN 255
           W++ 
Sbjct: 234 WLQK 237

>pdb|1F5R|A Chain A, Rat Trypsinogen Mutant Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 231

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/222 (29%), Positives = 99/222 (44%), Gaps = 61/222 (27%)
Query: 89  GGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV----------- 137
           GG     +  P+   L     F CG +LIN+ +V++AAHC    + + +           
Sbjct: 11  GGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGN 69
Query: 138 --------TIRGKSFSNKT-----------------------------------GIVTGW 154
                    I+  +F  KT                                    +++GW
Sbjct: 70  EQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGW 129
Query: 155 GVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGP 213
           G     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQGDSGGP
Sbjct: 130 GNTLSSGVNEPDLLKCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGDSGGP 188
Query: 214 LHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           +    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 189 VVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226

>pdb|4B2A|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tga) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 73/106 (68%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGP+  + +    + G+VSWGEGCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DAGGPVVCSGK----LQGIVSWGEGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1H4W|A Chain A, Structure Of Human Trypsin Iv (Brain Trypsin) Length = 224

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 67/107 (62%), Gaps = 6/107 (5%)
Query: 150 IVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG     G    D L  ++ P+L+ AECK  +Y  +IT +M C G+ +G KDSCQ 
Sbjct: 117 LISGWGNTLSFGADYPDELKCLDAPVLTQAECK-ASYPGKITNSMFCVGFLEGGKDSCQR 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           DSGGP+    +    + GVVSWG GCA +N PGVY +V  Y+ WIK+
Sbjct: 176 DSGGPVVCNGQ----LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218

>pdb|1V2Q|T Chain T, Trypsin Inhibitor In Complex With Bovine Trypsin Variant X(Sswi)bt.B4 Length = 223

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 52/106 (49%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSWIITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|1V2N|T Chain T, Potent Factor Xa Inhibitor In Complex With Bovine Trypsin Variant X(99175190)BT Length = 223

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|2R9P|A Chain A, Human Mesotrypsin Complexed With Bovine Pancreatic Trypsin Inhibitor(Bpti) Length = 224

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 6/107 (5%)
Query: 150 IVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG     G    D L  ++ P+L+ AECK  +Y  +IT +M C G+ +G KDSCQ 
Sbjct: 117 LISGWGNTLSFGADYPDELKCLDAPVLTQAECK-ASYPGKITNSMFCVGFLEGGKDSCQR 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           D+GGP+    +    + GVVSWG GCA +N PGVY +V  Y+ WIK+
Sbjct: 176 DAGGPVVCNGQ----LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218

>pdb|3PLK|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PG+Y +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIK 217

>pdb|4DG4|A Chain A, Human Mesotrypsin-S39y Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 224

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 67/107 (62%), Gaps = 6/107 (5%)
Query: 150 IVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG     G    D L  ++ P+L+ AECK  +Y  +IT +M C G+ +G KDSCQ 
Sbjct: 117 LISGWGNTLSFGADYPDELKCLDAPVLTQAECK-ASYPGKITNSMFCVGFLEGGKDSCQR 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           D+GGP+    +    + GVVSWG GCA +N PGVY +V  Y+ WIK+
Sbjct: 176 DAGGPVVCNGQ----LQGVVSWGHGCAWKNRPGVYTKVYNYVDWIKD 218

>pdb|3PMJ|A Chain A, Bovine Trypsin Variant X(Tripleile227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PG+Y +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGIYTKVCNYVSWIK 217

>pdb|3UQV|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 90.5 bits (223), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KDSCQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDSCQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PG Y +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIK 217

>pdb|3TGK|E Chain E, Trypsinogen Mutant D194n And Deletion Of Ile 16-Val 17 Complexed With Bovine Pancreatic Trypsin Inhibitor (Bpti) Length = 231

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 64/222 (28%), Positives = 99/222 (44%), Gaps = 61/222 (27%)
Query: 89  GGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV----------- 137
           GG     +  P+   L     F CG +LIN+ +V++AAHC    + + +           
Sbjct: 11  GGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGN 69
Query: 138 --------TIRGKSFSNKT-----------------------------------GIVTGW 154
                    I+  +F  KT                                    +++GW
Sbjct: 70  EQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLISGW 129
Query: 155 GVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGP 213
           G     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G KDSCQG+SGGP
Sbjct: 130 GNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKDSCQGNSGGP 188
Query: 214 LHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           +    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 189 VVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 226

>pdb|4B2B|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tgpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGP+  + +    + G+VSWGEGCAQ+N PG Y +V  Y++WIK
Sbjct: 176 DAGGPVVCSGK----LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIK 217

>pdb|2TBS|A Chain A, Cold-Adaption Of Enzymes: Structural Comparison Between Salmon And Bovine Trypsins Length = 222

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 49/103 (47%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      + SD L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSTADSDKLQCLNIPILSYSDCNDS-YPGMITNAMFCAGYLEGGKDSCQGDS 176
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 177 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFSDWL 215

>pdb|4B1T|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala ( Ta) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 72/106 (67%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGP+  + +    + G+VSWG GCAQ+N PGVY +V  Y++WIK
Sbjct: 176 DAGGPVVCSGK----LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIK 217

>pdb|3V0X|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM C GY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCVGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWGEGCAQ+N PG Y +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIK 217

>pdb|3UWI|A Chain A, Bovine Trypsin Variant X(Tripleglu217phe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM C GY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCVGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWGEGCAQ+N PG Y +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGEGCAQKNKPGFYTKVCNYVSWIK 217

>pdb|3UNS|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PG Y +V  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIK 217

>pdb|1FIW|A Chain A, Three-Dimensional Structure Of Beta-Acrosin From Ram Spermatozoa Length = 290

Iteration: 1
 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 65/114 (57%), Gaps = 4/114 (3%)
Query: 147 KTGIVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKD 204
           +T  V GWG +Q+    TS  L E  V ++    C  T + N RI    +CAGYP+G+ D
Sbjct: 134 QTCWVAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKID 193
Query: 205 SCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           +CQGDSGGPL   +  E  + +VG+ SWG GCA+   PGVY     YL WI + 
Sbjct: 194 TCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASK 247

>pdb|1BRB|E Chain E, Crystal Structures Of Rat Anionic Trypsin Complexed With The Protein Inhibitors Appi And Bpti Length = 223

Iteration: 1
 Score = 88.6 bits (218), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 65/224 (29%), Positives = 99/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV--------- 137
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    + + +         
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 138 ----------TIRGKSFSNKT-----------------------------------GIVT 152
                      I+  +F  KT                                    +++
Sbjct: 60  GNEQFVNAAKIIKHPNFDRKTLNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+  +Y  +IT NM+C G+ +G K SCQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCE-ASYPGKITDNMVCVGFLEGGKGSCQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + P VY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPDVYTKVCNYVDWIQD 218

>pdb|3UNQ|A Chain A, Bovine Trypsin Variant X(Triplephe227) In Complex With Small Molecule Inhibitor Length = 223

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           DSGGP+  + +    + G+VSWG GCAQ+N PG Y ++  Y++WIK
Sbjct: 176 DSGGPVVCSGK----LQGIVSWGSGCAQKNKPGFYTKLCNYVSWIK 217

>pdb|4B2C|A Chain A, Structure Of The Factor Xa-Like Trypsin Variant Triple-Ala (Tpa) In Complex With Eglin C Length = 223

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 71/106 (66%), Gaps = 6/106 (5%)
Query: 150 IVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +++GWG  K  G++  D L  ++ PILS++   K+A    IT NM CAGY +G KD+CQG
Sbjct: 117 LISGWGNTKSSGTSYPDVLKCLKAPILSDSS-CKSASSFIITSNMFCAGYLEGGKDACQG 175
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           D+GGP+  + +    + G+VSWG GCAQ+N PG Y +V  Y++WIK
Sbjct: 176 DAGGPVVCSGK----LQGIVSWGSGCAQKNKPGFYTKVCNYVSWIK 217

>pdb|1UTJ|A Chain A, Trypsin Specificity As Elucidated By Lie Calculations, X-Ray Structures And Association Constant Measurements Length = 242

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      + S+ L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 138 VSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-YPGMITNAMFCAGYLEGGKDSCQGDS 196
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 197 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 235

>pdb|1BIT|A Chain A, The Crystal Structure Of Anionic Salmon Trypsin In A Second Crystal Form Length = 237

Iteration: 1
 Score = 88.2 bits (217), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      + S+ L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 133 VSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-YPGMITNAMFCAGYLEGGKDSCQGDS 191
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 192 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 230

>pdb|2ZPR|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 2 From Chum Salmon Length = 222

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      +  D L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSTADGDKLQCLNIPILSYSDCNNS-YPGMITNAMFCAGYLEGGKDSCQGDS 176
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 177 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 215

>pdb|1HJ8|A Chain A, 1.00 Aa Trypsin From Atlantic Salmon Length = 222

Iteration: 1
 Score = 87.8 bits (216), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      + S+ L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-YPGMITNAMFCAGYLEGGKDSCQGDS 176
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 177 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 215

>pdb|1BZX|E Chain E, The Crystal Structure Of Anionic Salmon Trypsin In Complex With Bovine Pancreatic Trypsin Inhibitor Length = 222

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 63/103 (61%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      + S+ L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-YPGMITNAMFCAGYLEGGKDSCQGDS 176
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 177 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 215

>pdb|1L2E|A Chain A, Human Kallikrein 6 (Hk6) Active Form With Benzamidine Inhibitor Length = 223

Iteration: 1
 Score = 87.4 bits (215), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 92/218 (42%), Gaps = 62/218 (28%)
Query: 98  YPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV---TIRGKSFSNKTGIVT-- 152
           +P+ A L       CG  LI+ L+VLTAAHC    L +++    +R +  S +   V   
Sbjct: 12  HPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRA 71
Query: 153 -------------------------------------------------GWGVQKQGGST 163
                                                            GWG +   G  
Sbjct: 72  VIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWG-KTADGDF 130
Query: 164 SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHH 223
            DT+    + ++S  EC+  AY  +IT NMLCAG  K  KDSCQGDSGGPL   +    H
Sbjct: 131 PDTIQCAYIHLVSREECEH-AYPGQITQNMLCAGDEKYGKDSCQGDSGGPLVCGD----H 185
Query: 224 IVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTIDA 260
           + G+VSWG   C  +  PGVY  V RY  WI+  TI A
Sbjct: 186 LRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQ-KTIQA 222

>pdb|3GYL|B Chain B, Structure Of Prostasin At 1.3 Angstroms Resolution In Complex With A Calcium Ion. Length = 261

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 151 VTGWGVQKQGGS--TSDTLLEVEVPILSNAECK-------KTAYENRITPNMLCAGYPKG 201
           VTGWG      S  T   L ++EVP++S   C        K    + +  +M+CAGY +G
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEG 185
Query: 202 EKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID 259
            KD+CQGDSGGPL    E + ++ G+VSWG+ C   N PGVY   + Y +WI++   +
Sbjct: 186 GKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTE 243

>pdb|3E0P|B Chain B, The X-Ray Structure Of Human Prostasin In Complex With A Covalent Benzoxazole Inhibitor Length = 271

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 151 VTGWGVQKQGGS--TSDTLLEVEVPILSNAECK-------KTAYENRITPNMLCAGYPKG 201
           VTGWG      S  T   L ++EVP++S   C        K    + +  +M+CAGY +G
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEG 185
Query: 202 EKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID 259
            KD+CQGDSGGPL    E + ++ G+VSWG+ C   N PGVY   + Y +WI++   +
Sbjct: 186 GKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTE 243

>pdb|3DFJ|A Chain A, Crystal Structure Of Human Prostasin Length = 263

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 66/118 (55%), Gaps = 9/118 (7%)
Query: 151 VTGWGVQKQGGS--TSDTLLEVEVPILSNAECK-------KTAYENRITPNMLCAGYPKG 201
           VTGWG      S  T   L ++EVP++S   C        K    + +  +M+CAGY +G
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNALYNIDAKPEEPHFVQEDMVCAGYVEG 185
Query: 202 EKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID 259
            KD+CQGDSGGPL    E + ++ G+VSWG+ C   N PGVY   + Y +WI++   +
Sbjct: 186 GKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSKVTE 243

>pdb|1J15|A Chain A, Benzamidine In Complex With Rat Trypsin Mutant X99175190RT Length = 223

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 68/224 (30%), Positives = 99/224 (44%), Gaps = 61/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC----VHQGLG---IWVTI 139
           IVGG     +  P+   L     F CG +LIN+ +V++AAHC    +   LG   I V  
Sbjct: 1   IVGGYTCQENSVPYQVSLNSGYHF-CGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59
Query: 140 RGKSFSNKTGIV-----------------------------------------------T 152
             + F N   I+                                               +
Sbjct: 60  GNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119
Query: 153 GWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           GWG     G     LL+ ++ P+L  A+C+ ++    IT NM+C G+ +G KD+CQGDSG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCEASS-SFIITDNMVCVGFLEGGKDACQGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GP+    E    + G+VSWG GCA  + PGVY +V  Y+ WI++
Sbjct: 179 GPVVCNGE----LQGIVSWGYGCALPDNPGVYTKVCNYVDWIQD 218

>pdb|4FU7|A Chain A, Crystal Structure Of The Urokinase Length = 246

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G ++         L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1OWE|A Chain A, Substituted 2-Naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G ++         L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|2ZPS|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 3 From Chum Salmon Length = 222

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      +  + L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSTADKNKLQCLNIPILSYSDCNNS-YPGMITNAMFCAGYLEGGKDSCQGDS 176
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 177 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNNWL 215

>pdb|2NWN|A Chain A, New Pharmacophore For Serine Protease Inhibition Revealed By Crystal Structure Of Human Urokinase-Type Plasminogen Activator Complexed With A Cyclic Peptidyl Inhibitor, Upain-1 Length = 253

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G ++         L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1MBQ|A Chain A, Anionic Trypsin From Pacific Chum Salmon Length = 220

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      +  + L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSTADKNKLQCLNIPILSYSDCNNS-YPGMITNAMFCAGYLEGGKDSCQGDS 176
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 177 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 215

>pdb|2ZPQ|A Chain A, Crystal Structure Of Anionic Trypsin Isoform 1 From Chum Salmon Length = 222

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 5/103 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      +  + L  + +PILS ++C  + Y   IT  M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSTADKNKLQCLNIPILSYSDCNNS-YPGMITNAMFCAGYLEGGKDSCQGDS 176
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 177 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 215

>pdb|1SC8|U Chain U, Urokinase Plasminogen Activator B-Chain-J435 Complex Length = 262

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +          L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 152 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 211
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 212 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 260

>pdb|1GI8|B Chain B, A Novel Serine Protease Inhibition Motif Involving A Multi- Centered Short Hydrogen Bonding Network At The Active Site Length = 245

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 172 VPILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW 230
           V ++S+ EC++  Y  + +T  MLCA  P+ + DSCQGDSGGPL  + +    + G+VSW
Sbjct: 159 VKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSW 218
Query: 231 GEGCAQENYPGVYARVNRYLTWIKNNT 257
           G GCA ++ PGVY RV+ +L WI+++T
Sbjct: 219 GRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1FV9|A Chain A, Crystal Structure Of Human Microurokinase In Complex With 2- Amino-5-Hydroxy-Benzimidazole Length = 245

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +          L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|2VNT|A Chain A, Urokinase-Type Plasminogen Activator Inhibitor Complex With A 1-(7-Sulphoamidoisoquinolinyl)guanidine Length = 276

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +          L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 160 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 219
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 220 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 268

>pdb|1W0Z|U Chain U, Urokinase Type Plasminogen Activator Length = 247

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +          L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|3MWI|U Chain U, The Complex Crystal Structure Of Urokianse And 5-Nitro-1h-Indole-2- Amidine Length = 246

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +          L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1GJ7|B Chain B, Engineering Inhibitors Highly Selective For The S1 Sites Of Ser190 Trypsin-Like Serine Protease Drug Targets Length = 253

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 172 VPILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW 230
           V ++S+ EC++  Y  + +T  MLCA  P+ + DSCQGDSGGPL  + +    + G+VSW
Sbjct: 159 VKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSW 218
Query: 231 GEGCAQENYPGVYARVNRYLTWIKNNT 257
           G GCA ++ PGVY RV+ +L WI+++T
Sbjct: 219 GRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1EJN|A Chain A, Urokinase Plasminogen Activator B-Chain Inhibitor Complex Length = 253

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 172 VPILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW 230
           V ++S+ EC++  Y  + +T  MLCA  P+ + DSCQGDSGGPL  + +    + G+VSW
Sbjct: 159 VKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSW 218
Query: 231 GEGCAQENYPGVYARVNRYLTWIKNNT 257
           G GCA ++ PGVY RV+ +L WI+++T
Sbjct: 219 GRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1OWD|A Chain A, Substituted 2-naphthamidine Inhibitors Of Urokinase Length = 245

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +          L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1LMW|B Chain B, Lmw U-Pa Structure Complexed With Egrcmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 253

Iteration: 1
 Score = 85.5 bits (210), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +          L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|3IG6|B Chain B, Low Molecular Weigth Human Urokinase Type Plasminogen Activator 2-[6- (3'-Aminomethyl-Biphenyl-3-Yloxy)-4-(3-Dimethylamino- Pyrrolidin-1- Yl)-3, 5-Difluoro-Pyridin-2-Yloxy]-4-Dimethylamino-Benzoic Acid Complex Length = 253

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 69/109 (63%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +          L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|3F6U|H Chain H, Crystal Structure Of Human Activated Protein C (Apc) Complexed With Ppack Length = 240

Iteration: 1
 Score = 85.5 bits (210), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 150 IVTGWGV----QKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
           +VTGWG     +K+       +L  +++P++ + EC +    N ++ NMLCAG     +D
Sbjct: 127 LVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV-MSNMVSENMLCAGILGDRQD 185
Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID 259
           +C+GDSGGP+  +      +VG+VSWGEGC   +  GVY +V+RYL WI  +  D
Sbjct: 186 ACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRD 240

>pdb|2O8U|A Chain A, Crystal Structure And Binding Epitopes Of Urokinase-Type Plasminogen Activator (C122aN145QS195A) IN COMPLEX WITH Inhibitors Length = 253

Iteration: 1
 Score = 85.1 bits (209), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 43/109 (39%), Positives = 70/109 (64%), Gaps = 2/109 (1%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQG 208
           +TG+G ++         L++ V  ++S+ EC++  Y  + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKEQSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196
Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           D+GGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DAGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1AUT|C Chain C, Human Activated Protein C Length = 250

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 68/115 (59%), Gaps = 6/115 (5%)
Query: 150 IVTGWGV----QKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
           +VTGWG     +K+       +L  +++P++ + EC +    N ++ NMLCAG     +D
Sbjct: 127 LVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSEV-MSNMVSENMLCAGILGDRQD 185
Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID 259
           +C+GDSGGP+  +      +VG+VSWGEGC   +  GVY +V+RYL WI  +  D
Sbjct: 186 ACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIRD 240

>pdb|3BSQ|A Chain A, Crystal Structure Of Human Kallikrein 7 Produced As A Secretion Protein In E.Coli Length = 227

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 68/223 (30%), Positives = 95/223 (42%), Gaps = 59/223 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC------VHQG---LGIWV 137
           I+ G       +PW   L+   + +CG  L+N  +VLTAAHC      VH G   LG   
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRR 60
Query: 138 TIR---GKSFSN----------------------------------------KTGIVTGW 154
             R    KSF +                                         T  V+GW
Sbjct: 61  AQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGW 120
Query: 155 GVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGP 213
           G       T    L+ V+V ++S  +C K  Y++ +  +MLCAG P  +K++C GDSGGP
Sbjct: 121 GTTTSPDVTFPSDLMCVDVKLISPQDCTK-VYKDLLENSMLCAGIPDSKKNACNGDSGGP 179
Query: 214 LHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKN 255
           L         + G+VSWG   C Q N PGVY +V ++  WI +
Sbjct: 180 LVCRGT----LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWIND 218

>pdb|2QXG|A Chain A, Crystal Structure Of Human Kallikrein 7 In Complex With Ala- Ala-phe-chloromethylketone Length = 224

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/226 (30%), Positives = 98/226 (43%), Gaps = 60/226 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC------VHQG---LGIWV 137
           I+ G       +PW   L+   + +CG  L+N  +VLTAAHC      VH G   LG   
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRR 60
Query: 138 TIR---GKSFSN----------------------------------------KTGIVTGW 154
             R    KSF +                                         T  V+GW
Sbjct: 61  AQRIKASKSFRHPGYSTQTHVNDLMLVKLNSQARLSSMVKKVRLPSRCEPPGTTCTVSGW 120
Query: 155 GVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGP 213
           G       T    L+ V+V ++S  +C K  Y++ +  +MLCAG P  +K++C GDSGGP
Sbjct: 121 GTTTSPDVTFPSDLMCVDVKLISPQDCTK-VYKDLLENSMLCAGIPDSKKNACNGDSGGP 179
Query: 214 LHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI 258
           L         + G+VSWG   C Q N PGVY +V ++  WI N+T+
Sbjct: 180 LVCRGT----LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWI-NDTM 220

>pdb|1O5A|B Chain B, Dissecting And Designing Inhibitor Selectivity Determinants At The S1 Site Using An Artificial Ala190 Protease (Ala190 Upa) Length = 253

Iteration: 1
 Score = 84.7 bits (208), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/87 (44%), Positives = 60/87 (68%), Gaps = 1/87 (1%)
Query: 172 VPILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW 230
           V ++S+ EC++  Y  + +T  MLCA  P+ + D+CQGDSGGPL  + +    + G+VSW
Sbjct: 159 VKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDACQGDSGGPLVCSLQGRMTLTGIVSW 218
Query: 231 GEGCAQENYPGVYARVNRYLTWIKNNT 257
           G GCA ++ PGVY RV+ +L WI+++T
Sbjct: 219 GRGCALKDKPGVYTRVSHFLPWIRSHT 245

>pdb|1BDA|A Chain A, Catalytic Domain Of Human Single Chain Tissue Plasminogen Activator In Complex With Dansyl-Egr-Cmk (Dansyl-Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Query: 164 SDTLLEVEVPILSNAECKKTAYENR-ITPNMLCAGYPKG------EKDSCQGDSGGPLHY 216
           S+ L E  V +  ++ C      NR +T NMLCAG  +         D+CQGDSGGPL  
Sbjct: 163 SERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVC 222
Query: 217 ANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
            N+    +VG++SWG GC Q++ PGVY +V  YL WI++N
Sbjct: 223 LNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDN 262

>pdb|1RTF|B Chain B, Complex Of Benzamidine With The Catalytic Domain Of Human Two Chain Tissue Plasminogen Activator [(Tc)-T-Pa] Length = 252

Iteration: 1
 Score = 84.0 bits (206), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/100 (43%), Positives = 59/100 (59%), Gaps = 7/100 (7%)
Query: 164 SDTLLEVEVPILSNAECKKTAYENR-ITPNMLCAGYPKG------EKDSCQGDSGGPLHY 216
           S+ L E  V +  ++ C      NR +T NMLCAG  +         D+CQGDSGGPL  
Sbjct: 150 SERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVC 209
Query: 217 ANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
            N+    +VG++SWG GC Q++ PGVY +V  YL WI++N
Sbjct: 210 LNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDN 249

>pdb|3GOV|B Chain B, Crystal Structure Of The Catalytic Region Of Human Masp-1 Length = 251

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 5/112 (4%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYPKGEKDSCQ 207
           IV+GWG Q       +TL+E+E+PI+ ++ C+K     + ++T +M+CAG  +G KD+C 
Sbjct: 137 IVSGWGKQFLQ-RFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACA 195
Query: 208 GDSGGPLHYANETVH--HIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GDSGGP+   N      ++VG VSWG+ C +++  GVY+ ++    WI+  T
Sbjct: 196 GDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVT 247

>pdb|4IGD|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-1 Length = 406

Iteration: 1
 Score = 82.8 bits (203), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/112 (38%), Positives = 70/112 (62%), Gaps = 5/112 (4%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYPKGEKDSCQ 207
           IV+GWG Q       +TL+E+E+PI+ ++ C+K     + ++T +M+CAG  +G KD+C 
Sbjct: 292 IVSGWGKQFLQ-RFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACA 350
Query: 208 GDSGGPLHYANETVH--HIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GDSGGP+   N      ++VG VSWG+ C +++  GVY+ ++    WI+  T
Sbjct: 351 GDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVT 402

>pdb|1GVL|A Chain A, Human Prokallikrein 6 (Hk6) PROZYME PROPROTEASE M Proneurosin Length = 223

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 140 RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYP 199
           R  S    +  + GWG +   G   DT+    + ++S  EC+  AY  +IT NMLCAG  
Sbjct: 109 RDCSAQTTSCHILGWG-KTADGDFPDTIQCAYIHLVSREECEH-AYPGQITQNMLCAGDE 166
Query: 200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI 258
           K  KDSCQGDSGGPL   +    H+ G+VSWG   C  +  PGVY  V RY  WI+  TI
Sbjct: 167 KYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQ-KTI 221
Query: 259 DA 260
            A
Sbjct: 222 QA 223

>pdb|4D8N|A Chain A, Human Kallikrein 6 Inhibitors With A Para-Amidobenzylanmine P1 Group Carry A High Binding Efficiency Length = 223

Iteration: 1
 Score = 81.3 bits (199), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/122 (43%), Positives = 67/122 (54%), Gaps = 8/122 (6%)
Query: 140 RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYP 199
           R  S    +  + GWG +   G   DT+    + ++S  EC+  AY  +IT NMLCAG  
Sbjct: 108 RDCSAQTTSCHILGWG-KTADGDFPDTIQCAYIHLVSREECEH-AYPGQITQNMLCAGDE 165
Query: 200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI 258
           K  KDSCQGDSGGPL   +    H+ G+VSWG   C  +  PGVY  V RY  WI+  TI
Sbjct: 166 KYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQ-KTI 220
Query: 259 DA 260
            A
Sbjct: 221 QA 222

>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva Plasminogen Activator In Complex With Egr-Cmk (Glu-Gly-Arg Chloromethyl Ketone) Length = 265

Iteration: 1
 Score = 80.9 bits (198), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/114 (39%), Positives = 67/114 (58%), Gaps = 8/114 (7%)
Query: 151 VTGWGVQKQGGST-SDTLLEVEVPILSNAECK-KTAYENRITPNMLCAGYPK-GE----- 202
           ++G+G  K      S+ L E  V +  ++ C  K  +   +T NMLCAG  + GE     
Sbjct: 149 LSGYGKHKSSSPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNV 208
Query: 203 KDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
            D+CQGDSGGPL   N+    ++G++SWG GC +++ PGVY +V  YL WI++N
Sbjct: 209 HDACQGDSGGPLVCMNDNHMTLLGIISWGVGCGEKDVPGVYTKVTNYLGWIRDN 262

>pdb|2F9N|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant K192qD216G IN COMPLEX WITH LEUPEPTIN Length = 245

Iteration: 1
 Score = 80.9 bits (198), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 151 VTGWGV--QKQGGSTSDTLLEVEVPILSNAECKKT----AYENR----ITPNMLCAGYPK 200
           VTGWG     +       L +V+VPI+ N  C       AY       I  +MLCAG   
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            ++DSCQGDSGGPL           GVVSWGEGCAQ N PG+Y RV  YL WI +
Sbjct: 185 SQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|1MZA|A Chain A, Crystal Structure Of Human Pro-Granzyme K Length = 240

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 50/113 (44%), Positives = 64/113 (56%), Gaps = 9/113 (7%)
Query: 151 VTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYEN---RITPNMLCAGYPKGEKDSC 206
           VTGWG         SDTL EV V +LS   C   +Y N    IT +M+CAG  KG+KDSC
Sbjct: 127 VTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSC 186
Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARV-NRYLTWIKNNTI 258
           +GD+GGPL    + V H   +VS G  C     PG+Y  +  +Y TWIK+N +
Sbjct: 187 KGDAGGPL--ICKGVFH--AIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLV 235

>pdb|2CGA|A Chain A, Bovine Chymotrypsinogen A. X-Ray Crystal Structure Analysis And Refinement Of A New Crystal Form At 1.8 Angstroms Resolution Length = 245

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 105 MYKKRFYCGATLINNLYVL---TAAHCVHQGLGIWVTIRGKSFS-NKTGIVTGWGVQK-Q 159
           ++K   Y   T+ N++ +L   TAA        + +      F+   T + TGWG+ +  
Sbjct: 88  VFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYT 147
Query: 160 GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANE 219
             +T D L +  +P+LSN  CKK  +  +I   M+CAG       SC GDSGGPL     
Sbjct: 148 NANTPDRLQQASLPLLSNTNCKK-YWGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKN 204
Query: 220 TVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
               +VG+VSWG      + PGVYARV   + W++
Sbjct: 205 GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQ 239

>pdb|3TVJ|B Chain B, Catalytic Fragment Of Masp-2 In Complex With Its Specific Inhibitor Developed By Directed Evolution On Sgci Scaffold Length = 242

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 50/124 (40%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN------RITPNMLCAGY 198
           ++  G  +GWG+  Q G  +  L+ V++PI+ + +C   AYE        +T NMLCAG 
Sbjct: 120 TDDIGTASGWGL-TQRGFLARNLMYVDIPIVDHQKCT-AAYEKPPYPRGSVTANMLCAGL 177
Query: 199 PKGEKDSCQGDSGGPLHYAN-ETVHHIV-GVVSWGE-GCAQENYPGVYARVNRYLTWIKN 255
             G KDSC+GDSGG L + + ET    V G+VSWG   C +    GVY +V  Y+ WI+N
Sbjct: 178 ESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN 237
Query: 256 NTID 259
              D
Sbjct: 238 IISD 241

>pdb|1DLK|B Chain B, Crystal Structure Analysis Of Delta-Chymotrypsin Bound To A Peptidyl Chloromethyl Ketone Inhibitor Length = 230

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/155 (33%), Positives = 77/155 (49%), Gaps = 8/155 (5%)
Query: 105 MYKKRFYCGATLINNLYVL---TAAHCVHQGLGIWVTIRGKSFS-NKTGIVTGWGVQK-Q 159
           ++K   Y   T+ N++ +L   TAA        + +      F+   T + TGWG+ +  
Sbjct: 73  VFKNSKYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYT 132
Query: 160 GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANE 219
             +T D L +  +P+LSN  CKK  +  +I   M+CAG       SC GDSGGPL     
Sbjct: 133 NANTPDRLQQASLPLLSNTNCKK-YWGTKIKDAMICAGASG--VSSCMGDSGGPLVCKKN 189
Query: 220 TVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
               +VG+VSWG      + PGVYARV   + W++
Sbjct: 190 GAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQ 224

>pdb|1Q3X|A Chain A, Crystal Structure Of The Catalytic Region Of Human Masp-2 Length = 328

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN------RITPNMLCAGY 198
           ++  G  +GWG+  Q G  +  L+ V++PI+ + +C   AYE        +T NMLCAG 
Sbjct: 206 TDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCT-AAYEKPPYPRGSVTANMLCAGL 263
Query: 199 PKGEKDSCQGDSGGPLHYANETVHH--IVGVVSWGE-GCAQENYPGVYARVNRYLTWIKN 255
             G KDSC+GDSGG L + +       + G+VSWG   C +    GVY +V  Y+ WI+N
Sbjct: 264 ESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN 323
Query: 256 NTID 259
              D
Sbjct: 324 IISD 327

>pdb|1ZJK|A Chain A, Crystal Structure Of The Zymogen Catalytic Region Of Human Masp-2 Length = 403

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 68/124 (54%), Gaps = 11/124 (8%)
Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN------RITPNMLCAGY 198
           ++  G  +GWG+  Q G  +  L+ V++PI+ + +C   AYE        +T NMLCAG 
Sbjct: 281 TDDIGTASGWGLT-QRGFLARNLMYVDIPIVDHQKCT-AAYEKPPYPRGSVTANMLCAGL 338
Query: 199 PKGEKDSCQGDSGGPLHYANETVHH--IVGVVSWGE-GCAQENYPGVYARVNRYLTWIKN 255
             G KDSC+GDSGG L + +       + G+VSWG   C +    GVY +V  Y+ WI+N
Sbjct: 339 ESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN 398
Query: 256 NTID 259
              D
Sbjct: 399 IISD 402

>pdb|2BM2|A Chain A, Human Beta-Ii Tryptase In Complex With 4-(3-Aminomethyl- Phenyl)-Piperidin-1-Yl-(5-Phenethyl- Pyridin-3-Yl)- Methanone Length = 245

Iteration: 1
 Score = 79.7 bits (195), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 151 VTGWGV--QKQGGSTSDTLLEVEVPILSNAECKK-------TAYENRIT-PNMLCAGYPK 200
           VTGWG     +       L +V+VPI+ N  C         T  + RI   +MLCAG   
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--N 184
Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
             +DSCQGDSGGPL           GVVSWGEGCAQ N PG+Y RV  YL WI +
Sbjct: 185 TRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|2ZEB|A Chain A, Potent, Nonpeptide Inhibitors Of Human Mast Cell Tryptase Length = 243

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 151 VTGWGV--QKQGGSTSDTLLEVEVPILSNAECKK-------TAYENRIT-PNMLCAGYPK 200
           VTGWG     +       L +V+VPI+ N  C         T  + RI   +MLCAG   
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--N 184
Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
             +DSCQGDSGGPL           GVVSWGEGCAQ N PG+Y RV  YL WI +
Sbjct: 185 TRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|1A0L|A Chain A, Human Beta-Tryptase: A Ring-Like Tetramer With Active Sites Facing A Central Pore Length = 244

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 52/115 (45%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 151 VTGWGVQKQGGSTSDT--LLEVEVPILSNAECKK-------TAYENRIT-PNMLCAGYPK 200
           VTGWG             L +V+VPI+ N  C         T  + RI   +MLCAG   
Sbjct: 127 VTGWGDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAG--N 184
Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
             +DSCQGDSGGPL           GVVSWGEGCAQ N PG+Y RV  YL WI +
Sbjct: 185 TRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|2F9O|A Chain A, Crystal Structure Of The Recombinant Human Alpha I Tryptase Mutant D216g Length = 245

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 51/115 (44%), Positives = 61/115 (53%), Gaps = 12/115 (10%)
Query: 151 VTGWGV--QKQGGSTSDTLLEVEVPILSNAECKKT----AYENR----ITPNMLCAGYPK 200
           VTGWG     +       L +V+VPI+ N  C       AY       I  +MLCAG   
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            ++DSC+GDSGGPL           GVVSWGEGCAQ N PG+Y RV  YL WI +
Sbjct: 185 SQRDSCKGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|1AZZ|A Chain A, Fiddler Crab Collagenase Complexed To Ecotin Length = 226

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/230 (28%), Positives = 94/230 (40%), Gaps = 67/230 (29%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC---------------VHQ 131
           IVGG     + +P  A L     ++CG +LI+  ++LTAAHC               + +
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDVVLGAHNIRE 60
Query: 132 GLGIWVTIRGKSF-----------SNKTGIV----------------------------- 151
                VTI+   F           SN   ++                             
Sbjct: 61  DEATQVTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVT 120
Query: 152 -TGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
            TGWG+        SD L +V+VPI+SNA+C   A    +T   +C     G K +C GD
Sbjct: 121 PTGWGLPSDSALGISDVLRQVDVPIMSNADCD--AVYGIVTDGNICID-STGGKGTCNGD 177
Query: 210 SGGPLHYANETVHHIVGVVSWG--EGCAQENYPGVYARVNRYLTWIKNNT 257
           SGGPL+Y   T     G+ S+G   GC +  YP  + RV  +L WI+  T
Sbjct: 178 SGGPLNYNGLT----YGITSFGAAAGC-EAGYPDAFTRVTYFLDWIQTQT 222

>pdb|4FXG|H Chain H, Complement C4 In Complex With Masp-2 Length = 242

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 49/124 (39%), Positives = 70/124 (56%), Gaps = 11/124 (8%)
Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN------RITPNMLCAGY 198
           ++  G  +GWG+  Q G  +  L+ V++PI+ + +C   AYE        +T NMLCAG 
Sbjct: 120 TDDIGTASGWGL-TQRGFLARNLMYVDIPIVDHQKCT-AAYEKPPYPRGSVTANMLCAGL 177
Query: 199 PKGEKDSCQGDSGGPLHYAN-ETVHHIV-GVVSWGE-GCAQENYPGVYARVNRYLTWIKN 255
             G KDSC+GD+GG L + + ET    V G+VSWG   C +    GVY +V  Y+ WI+N
Sbjct: 178 ESGGKDSCRGDAGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN 237
Query: 256 NTID 259
              D
Sbjct: 238 IISD 241

>pdb|1YM0|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component B: A Novel, Glycosylated Two-chained Trypsin Length = 238

Iteration: 1
 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 62/108 (57%), Gaps = 5/108 (4%)
Query: 152 TGWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKG--EKDSCQG 208
           +GWG    GG     +L  V + I +NA C      + I  +M+CA    G  ++DSCQG
Sbjct: 127 SGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATDNTGMTDRDSCQG 186
Query: 209 DSGGPLHYANET-VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           DSGGPL   + + +  +VG+VSWG GCA   YPGVY+RV  +  WI +
Sbjct: 187 DSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITD 233

>pdb|2XRC|A Chain A, Human Complement Factor I Length = 565

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 62/110 (56%), Gaps = 6/110 (5%)
Query: 146 NKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRI-TPNMLCAGYPKGEKD 204
           N T IV+GWG +K       +L   EV ++SN  C K  Y NR     M CAG   G  D
Sbjct: 446 NDTCIVSGWGREKDNERVF-SLQWGEVKLISN--CSK-FYGNRFYEKEMECAGTYDGSID 501
Query: 205 SCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           +C+GDSGGPL   +   V ++ GVVSWGE C +  +PGVY +V  Y  WI
Sbjct: 502 ACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWI 551

>pdb|1DST|A Chain A, Mutant Of Factor D With Enhanced Catalytic Activity Length = 228

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 8/107 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           V GWG+    G   D+L  V +P+L  A C ++T ++  IT  ++CA      +DSC+GD
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDSCKGD 182
Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           SGGPL         + GVVSWG   C     PG+Y RV  Y  WI +
Sbjct: 183 SGGPLVCGGV----LEGVVSWGSRVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|1MKW|K Chain K, The Co-Crystal Structure Of Unliganded Bovine Alpha- Thrombin And Prethrombin-2: Movement Of The Yppw Segment And Active Site Residues Upon Ligand Binding Length = 308

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 124 TAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTS------DTLLEVEVPILSN 177
           TAA  +H G                G VTGWG +++  +TS        L  V +P++  
Sbjct: 174 TAAKLLHAGF--------------KGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVER 219
Query: 178 AECKKTAYENRITPNMLCAGYPKGEK---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGE 232
             CK +    RIT NM CAGY  GE    D+C+GDSGGP    +      + +G+VSWGE
Sbjct: 220 PVCKAST-RIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGE 278
Query: 233 GCAQENYPGVYARVNRYLTWIKN 255
           GC ++   G Y  V R   WI+ 
Sbjct: 279 GCDRDGKYGFYTHVFRLKKWIQK 301

>pdb|1LTO|A Chain A, Human Alpha1-Tryptase Length = 245

Iteration: 1
 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 50/115 (43%), Positives = 60/115 (52%), Gaps = 12/115 (10%)
Query: 151 VTGWGV--QKQGGSTSDTLLEVEVPILSNAECKKT----AYENR----ITPNMLCAGYPK 200
           VTGWG     +       L +V+VPI+ N  C       AY       I  +MLCAG   
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAG--N 184
Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            ++DSC+GDSGGPL           GVVSW EGCAQ N PG+Y RV  YL WI +
Sbjct: 185 SQRDSCKGDSGGPLVCKVNGTWLQAGVVSWDEGCAQPNRPGIYTRVTYYLDWIHH 239

>pdb|1BBR|K Chain K, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 259

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 124 TAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTS------DTLLEVEVPILSN 177
           TAA  +H G                G VTGWG +++  +TS        L  V +P++  
Sbjct: 125 TAAKLLHAGF--------------KGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVER 170
Query: 178 AECKKTAYENRITPNMLCAGYPKGEK---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGE 232
             CK +    RIT NM CAGY  GE    D+C+GDSGGP    +      + +G+VSWGE
Sbjct: 171 PVCKAST-RIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGE 229
Query: 233 GCAQENYPGVYARVNRYLTWIKN 255
           GC ++   G Y  V R   WI+ 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|2JET|C Chain C, Crystal Structure Of A Trypsin-Like Mutant (S189d, A226g) Chymotrypsin Length = 99

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 56/93 (60%), Gaps = 3/93 (3%)
Query: 163 TSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVH 222
           T + L +  +PI+S A+CKK+ + ++IT  M CAG      DSC GDSGGPL    + V 
Sbjct: 5   TPEKLQQAALPIVSEADCKKS-WGSKITDVMTCAGASG--VDSCMGDSGGPLVCQKDGVW 61
Query: 223 HIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            + G+VSWG G    + PGVY+RV   + W++ 
Sbjct: 62  TLAGIVSWGSGVCSTSTPGVYSRVTALMPWVQQ 94

>pdb|1ID5|H Chain H, Crystal Structure Of Bovine Thrombin Complex With Protease Inhibitor Ecotin Length = 256

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 69/143 (48%), Gaps = 26/143 (18%)
Query: 124 TAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTS------DTLLEVEVPILSN 177
           TAA  +H G                G VTGWG +++  +TS        L  V +P++  
Sbjct: 125 TAAKLLHAGF--------------KGRVTGWGNRRETWTTSVAEVQPSVLQVVNLPLVER 170
Query: 178 AECKKTAYENRITPNMLCAGYPKGEK---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGE 232
             CK +    RIT NM CAGY  GE    D+C+GDSGGP    +      + +G+VSWGE
Sbjct: 171 PVCKAST-RIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNNRWYQMGIVSWGE 229
Query: 233 GCAQENYPGVYARVNRYLTWIKN 255
           GC ++   G Y  V R   WI+ 
Sbjct: 230 GCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|2BVR|H Chain H, Human Thrombin Complexed With Fragment-based Small Molecules Occupying The S1 Pocket Length = 252

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK---DS 205
           G VTGWG  K+ G  S  L  V +PI+    CK +    RIT NM CAGY   E    D+
Sbjct: 136 GRVTGWGNLKEKGQPS-VLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDEGKRGDA 193
Query: 206 CQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 194 CEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 245

>pdb|1VZQ|H Chain H, Complex Of Thrombin With Designed Inhibitor 7165 Length = 250

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK---DS 205
           G VTGWG  K+ G  S  L  V +PI+    CK +    RIT NM CAGY   E    D+
Sbjct: 136 GRVTGWGNLKETGQPS-VLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDEGKRGDA 193
Query: 206 CQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 194 CEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 245

>pdb|1H8D|H Chain H, X-Ray Structure Of The Human Alpha-Thrombin Complex With A Tripeptide Phosphonate Inhibitor Length = 260

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/112 (41%), Positives = 60/112 (53%), Gaps = 7/112 (6%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK---DS 205
           G VTGWG  K+ G  S  L  V +PI+    CK +    RIT NM CAGY   E    D+
Sbjct: 136 GRVTGWGNLKETGQPS-VLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDEGKRGDA 193
Query: 206 CQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 194 CEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 245

>pdb|1THP|B Chain B, Structure Of Human Alpha-Thrombin Y225p Mutant Bound To D-Phe-Pro-Arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++  PG Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKPGFYTHVFRLKKWIQK 252

>pdb|1H8I|H Chain H, X-Ray Crystal Structure Of Human Alpha-Thrombin With A Tripeptide Phosphonate Inhibitor Length = 253

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 45/112 (40%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK---DS 205
           G VTGWG  K+       L  V +PI+    CK +    RIT NM CAGY   E    D+
Sbjct: 136 GRVTGWGNLKETWGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDEGKRGDA 194
Query: 206 CQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 CEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 246

>pdb|2ZGC|A Chain A, Crystal Structure Of Active Human Granzyme M Length = 240

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 92/230 (40%), Gaps = 61/230 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ--------------- 131
           I+GG+    H  P+MA L       CG  L++  +VLTAAHC+ Q               
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQLRLVLGLHTLD 60
Query: 132 --GLGIWV--------------------------------TIRGKSFSNKTGIVT----- 152
             GL   +                                TIR  +  +K  +V      
Sbjct: 61  SPGLTFHIKAAIQHPRYKPVPALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRC 120
Query: 153 ---GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
              GWG+  QGG  S  L E+++ +L    C  + + N  ++P+M+C      ++  C+G
Sbjct: 121 SMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKG 180
Query: 209 DSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL      V  + GV+S+    C     P V   V  Y++WI+  T
Sbjct: 181 DSGGPLVCGKGRV--LAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVT 228

>pdb|2ZGJ|A Chain A, Crystal Structure Of D86n-gzmm Complexed With Its Optimal Synthesized Substrate Length = 240

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 92/230 (40%), Gaps = 61/230 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ--------------- 131
           I+GG+    H  P+MA L       CG  L++  +VLTAAHC+ Q               
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQLRLVLGLHTLD 60
Query: 132 --GLGIWV--------------------------------TIRGKSFSNKTGIVT----- 152
             GL   +                                TIR  +  +K  +V      
Sbjct: 61  SPGLTFHIKAAIQHPRYKPVPALENNLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRC 120
Query: 153 ---GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQG 208
              GWG+  QGG  S  L E+++ +L    C  + + N  ++P+M+C      ++  C+G
Sbjct: 121 SMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKG 180
Query: 209 DSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL      V  + GV+S+    C     P V   V  Y++WI+  T
Sbjct: 181 DSGGPLVCGKGRV--LAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVT 228

>pdb|1SGF|G Chain G, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 237

Iteration: 1
 Score = 75.5 bits (184), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/110 (38%), Positives = 64/110 (58%), Gaps = 7/110 (6%)
Query: 148 TGIVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
           T + +GWG +       +D L  V + +L N +C K A+  ++T  MLCAG   G KD+C
Sbjct: 127 TCLASGWGSITPTKFQFTDDLYCVNLKLLPNEDCAK-AHIEKVTDAMLCAGEMDGGKDTC 185
Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           +GDSGGPL         + G+ SWG   C + + PGVY ++N++ +WIK+
Sbjct: 186 KGDSGGPLICDGV----LQGITSWGHTPCGEPDMPGVYTKLNKFTSWIKD 231

>pdb|1KDQ|B Chain B, Crystal Structure Analysis Of The Mutant S189d Rat Chymotrypsin Length = 99

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/93 (40%), Positives = 55/93 (59%), Gaps = 3/93 (3%)
Query: 163 TSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVH 222
           T + L +  +PI+S A+CKK+ + ++IT  M CAG      DSC GDSGGPL    + V 
Sbjct: 5   TPEKLQQAALPIVSEADCKKS-WGSKITDVMTCAG--ASGVDSCMGDSGGPLVCQKDGVW 61
Query: 223 HIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            + G+VSWG G    + P VY+RV   + W++ 
Sbjct: 62  TLAGIVSWGSGVCSTSTPAVYSRVTALMPWVQQ 94

>pdb|1TWX|B Chain B, Crystal Structure Of The Thrombin Mutant D221aD222K Length = 259

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 60/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGCA++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCARKGKYGFYTHVFRLKKWIQK 252

>pdb|1BTH|H Chain H, Structure Of Thrombin Complexed With Bovine Pancreatic Trypsin Inhibitor Length = 259

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/118 (39%), Positives = 61/118 (51%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQGGSTS------DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+  +T+        L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTTNVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+CQGDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACQGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1SPJ|A Chain A, Structure Of Mature Human Tissue Kallikrein (Human Kallikrein 1 Or Klk1) At 1.70 Angstrom Resolution With Vacant Active Site Length = 238

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 46/111 (41%), Positives = 63/111 (56%), Gaps = 7/111 (6%)
Query: 147 KTGIVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
            T + +GWG ++ +  S  D L  V++ IL N ECKK A+  ++T  MLC G+ +G KD+
Sbjct: 127 STCLASGWGSIEPENFSFPDDLQCVDLKILPNDECKK-AHVQKVTDFMLCVGHLEGGKDT 185
Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKN 255
           C GDSGGPL         + GV SWG   C   N P V  RV  Y+ WI++
Sbjct: 186 CVGDSGGPLMCDGV----LQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIED 232

>pdb|1NPM|A Chain A, Neuropsin, A Serine Protease Expressed In The Limbic System Of Mouse Brain Length = 225

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 9/112 (8%)
Query: 150 IVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           I++GWG V     +  +TL   EV I S  +C++ AY  +IT  M+CAG   G  D+CQG
Sbjct: 121 IISGWGTVTSPQENFPNTLNCAEVKIYSQNKCER-AYPGKITEGMVCAGSSNGA-DTCQG 178
Query: 209 DSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID 259
           DSGGPL         + G+ SWG + C +   PGVY ++ RY TWIK  T+D
Sbjct: 179 DSGGPLVCDG----MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIK-KTMD 225

>pdb|1B7X|B Chain B, Structure Of Human Alpha-Thrombin Y225i Mutant Bound To D- Phe-Pro-Arg-Chloromethylketone Length = 259

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKIGFYTHVFRLKKWIQK 252

>pdb|2BDG|A Chain A, Human Kallikrein 4 Complex With Nickel And P-aminobenzamidine Length = 223

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 62/224 (27%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ----GLGIWV----- 137
           I+ G+    H  PW A L+ +   +C   L++  +VL+AAHC       GLG+       
Sbjct: 1   IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQ 60
Query: 138 ----------------------------------------TIRGKSFSNK------TGIV 151
                                                   TIR  S +++      + +V
Sbjct: 61  EPGSQMVEASLSVRHPEYNRPLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLV 120
Query: 152 TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
           +GWG+   G     T+L+     + + E     Y+    P+M CAG  + +KDSC GDSG
Sbjct: 121 SGWGLLANG--RMPTVLQCVNVSVVSEEVCSKLYDPLYHPSMFCAGGGQDQKDSCNGDSG 178
Query: 212 GPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIK 254
           GPL        ++ G+VS+G+  C Q   PGVY  + ++  WI+
Sbjct: 179 GPLICNG----YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIE 218

>pdb|2OLG|A Chain A, Crystal Structure Of The Serine Protease Domain Of Prophenoloxidase Activating Factor-I In A Zymogen Form Length = 278

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/110 (40%), Positives = 63/110 (57%), Gaps = 7/110 (6%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYPKGEKDSCQG 208
           V GWG + + G  S    ++ VP++   +C KT  A   R+  + LCAG  K  KDSC G
Sbjct: 169 VVGWG-RTETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEKA-KDSCGG 226
Query: 209 DSGGPL--HYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           DSGGPL    AN+    + G+VS+G  C  E +PG+Y +V +Y  WI+ N
Sbjct: 227 DSGGPLLAERANQQFF-LEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGN 275

>pdb|1MH0|A Chain A, Crystal Structure Of The Anticoagulant Slow Form Of Thrombin Length = 287

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 166 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 224
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 225 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282

>pdb|1D9I|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 288

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 166 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 224
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 225 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282

>pdb|1D6W|A Chain A, Structure Of Thrombin Complexed With Selective Non-Electrophilic Inhibitors Having Cyclohexyl Moieties At P1 Length = 287

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 166 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 224
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 225 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282

>pdb|1JWT|A Chain A, Crystal Structure Of Thrombin In Complex With A Novel Bicyclic Lactam Inhibitor Length = 305

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 172 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 230
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 231 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 288

>pdb|1HAG|E Chain E, The Isomorphous Structures Of Prethrombin2, Hirugen-And Ppack- Thrombin: Changes Accompanying Activation And Exosite Binding To Thrombin Length = 295

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 172 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 230
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 231 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 288

>pdb|1MTN|C Chain C, Bovine Alpha-Chymotrypsin:bpti Crystallization Length = 97

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 163 TSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVH 222
           T D L +  +P+LSN  CKK  +  +I   M+CAG       SC GDSGGPL        
Sbjct: 3   TPDRLQQASLPLLSNTNCKKY-WGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAW 59
Query: 223 HIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
            +VG+VSWG      + PGVYARV   + W++
Sbjct: 60  TLVGIVSWGSSTCSTSTPGVYARVTALVNWVQ 91

>pdb|1NM6|A Chain A, Thrombin In Complex With Selective Macrocyclic Inhibitor At 1.8a Length = 287

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 165 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 223
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 224 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 281

>pdb|2BDY|A Chain A, Thrombin In Complex With Inhibitor Length = 289

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 166 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 224
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 225 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 282

>pdb|1EOJ|A Chain A, Design Of P1' And P3' Residues Of Trivalent Thrombin Inhibitors And Their Crystal Structures Length = 289

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 168 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 226
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 227 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 284

>pdb|2THF|B Chain B, Structure Of Human Alpha-thrombin Y225f Mutant Bound To D-phe-pro-arg- Chloromethylketone Length = 259

Iteration: 1
 Score = 72.8 bits (177), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKFGFYTHVFRLKKWIQK 252

>pdb|1AFQ|C Chain C, Crystal Structure Of Bovine Gamma-Chymotrypsin Complexed With A Synthetic Inhibitor Length = 96

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/92 (41%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 163 TSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVH 222
           T D L +  +P+LSN  CKK  +  +I   M+CAG       SC GDSGGPL        
Sbjct: 2   TPDRLQQASLPLLSNTNCKKY-WGTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAW 58
Query: 223 HIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
            +VG+VSWG      + PGVYARV   + W++
Sbjct: 59  TLVGIVSWGSSTCSTSTPGVYARVTALVNWVQ 90

>pdb|2A0Q|B Chain B, Structure Of Thrombin In 400 Mm Potassium Chloride Length = 257

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1QUR|H Chain H, Human Alpha-Thrombin In Complex With Bivalent, Benzamidine-Based Synthetic Inhibitor Length = 257

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1GJ5|H Chain H, Selectivity At S1, H2o Displacement, Upa, Tpa, Ser190ALA190 PROTEASE, Structure-Based Drug Design Length = 258

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1DX5|M Chain M, Crystal Structure Of The Thrombin-Thrombomodulin Complex Length = 259

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|3JZ1|B Chain B, Crystal Structure Of Human Thrombin Mutant N143p In E:na+ Form Length = 259

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGPLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1SFQ|B Chain B, Fast Form Of Thrombin Mutant R(77a)a Bound To Ppack Length = 259

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1NU9|A Chain A, Staphylocoagulase-prethrombin-2 Complex Length = 291

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 168 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 226
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 227 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 284

>pdb|1ABI|H Chain H, Structure Of The Hirulog 3-Thrombin Complex And Nature Of The S' Subsites Of Substrates And Inhibitors Length = 259

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|2XWA|A Chain A, Crystal Structure Of Complement Factor D Mutant R202a Length = 228

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           V GWG+    G   D+L  V +P+L  A C ++T ++  IT  ++CA      +DSC+GD
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDSCKGD 182
Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           SGGPL         + GVV+ G   C     PG+Y RV  Y  WI +
Sbjct: 183 SGGPLVCGGV----LEGVVTSGSAVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|2GP9|B Chain B, Crystal Structure Of The Slow Form Of Thrombin In A Self- Inhibited Conformation Length = 259

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|3NXP|A Chain A, Crystal Structure Of Human Prethrombin-1 Length = 424

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 301 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 359
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 360 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 417

>pdb|1M9U|A Chain A, Crystal Structure Of Earthworm Fibrinolytic Enzyme Component A From Eisenia Fetida Length = 241

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 17/186 (9%)
Query: 83  KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTI--- 139
           +++   G Q   V  Y      M++      A+  N++ +L  A  +  G  I   +   
Sbjct: 62  QQSDTSGTQTANVDSY-----TMHENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPA 116
Query: 140 -RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE---NRITPNMLC 195
                ++  T +++GWG      +  D L +  +P+++ A+C           I  N +C
Sbjct: 117 NNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHIC 176
Query: 196 AGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW----GEGCAQENYPGVYARVNRYLT 251
              P G   +C GDSGGPL+  +     +VGV SW    G G    +YP VY RV+ YL 
Sbjct: 177 VQDPAGNTGACNGDSGGPLNCPDGGTR-VVGVTSWVVSSGLGACLPDYPSVYTRVSAYLG 235
Query: 252 WIKNNT 257
           WI +N+
Sbjct: 236 WIGDNS 241

>pdb|4D9Q|A Chain A, Inhibiting Alternative Pathway Complement Activation By Targeting The Exosite On Factor D Length = 228

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/107 (38%), Positives = 55/107 (51%), Gaps = 8/107 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           V GWG+    G   D L  V +P+L  A C ++T ++  IT  M+CA      +DSC+GD
Sbjct: 125 VAGWGIVSHAGRRPDRLQHVLLPVLDRATCNRRTHHDGAITQRMMCA--ESNRRDSCKGD 182
Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           SGGPL         + GVV+ G   C     PG+Y RV  Y  WI +
Sbjct: 183 SGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|1WBG|B Chain B, Active Site Thrombin Inhibitors Length = 259

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC  +   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCRDDGKYGFYTHVFRLKKWIQK 252

>pdb|1FDP|A Chain A, Proenzyme Of Human Complement Factor D, Recombinant Profactor D Length = 235

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           V GWG+    G   D+L  V +P+L  A C ++T ++  IT  ++CA      +DSC+GD
Sbjct: 132 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDSCKGD 189
Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           SGGPL         + GVV+ G   C     PG+Y RV  Y  WI +
Sbjct: 190 SGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 232

>pdb|3GIC|B Chain B, Structure Of Thrombin Mutant Delta(146-149e) In The Free Form Length = 250

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 58/112 (51%), Gaps = 9/112 (8%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK---DS 205
           G VTGWG  K   S    L  V +PI+    CK +    RIT NM CAGY   E    D+
Sbjct: 136 GRVTGWGNLKGQPSV---LQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDEGKRGDA 191
Query: 206 CQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 192 CEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 243

>pdb|3K65|B Chain B, Crystal Structure Of Prethombin-2FRAGMENT-2 Complex Length = 308

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 185 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 243
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GD+GGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 244 GKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 301

>pdb|1DSU|A Chain A, Human Factor D, Complement Activating Enzyme Length = 228

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           V GWG+    G   D+L  V +P+L  A C ++T ++  IT  ++CA      +DSC+GD
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDSCKGD 182
Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           SGGPL         + GVV+ G   C     PG+Y RV  Y  WI +
Sbjct: 183 SGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|1DM4|B Chain B, Ser195ala Mutant Of Human Thrombin Complexed With Fibrinopeptide A (7- 16) Length = 260

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 137 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 195
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GD+GGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 196 GKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 253

>pdb|1EAI|A Chain A, Complex Of Ascaris Chymotrpsin/elastase Inhibitor With Porcine Elastase Length = 240

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN-MLCAGYPKGEKDSCQGD 209
           +TGWG+ +  G  + TL +  +P +  A C  ++Y      N M+CAG   G +  CQGD
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGD 187
Query: 210 SGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKN 255
           SGGPLH      + + GV S+    GC     P V+ RV+ Y++WI N
Sbjct: 188 SGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINN 235

>pdb|2EST|E Chain E, Crystallographic Study Of The Binding Of A Trifluoroacetyl Dipeptide Anilide Inhibitor With Elastase Length = 240

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN-MLCAGYPKGEKDSCQGD 209
           +TGWG+ +  G  + TL +  +P +  A C  ++Y      N M+CAG   G +  CQGD
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGD 187
Query: 210 SGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKN 255
           SGGPLH      + + GV S+    GC     P V+ RV+ Y++WI N
Sbjct: 188 SGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINN 235

>pdb|3SQE|E Chain E, Crystal Structure Of Prethrombin-2 Mutant S195a In The Alternative Form Length = 290

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 167 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 225
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GD+GGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 226 GKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 283

>pdb|1HAX|B Chain B, Snapshots Of Serine Protease Catalysis: (A) Acyl-Enzyme Intermediate Between Porcine Pancreatic Elastase And Human Beta-Casomorphin-7 At Ph 5 Length = 240

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 58/108 (53%), Gaps = 4/108 (3%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN-MLCAGYPKGEKDSCQGD 209
           +TGWG+ +  G  + TL +  +P +  A C  ++Y      N M+CAG   G +  CQGD
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAG-GDGVRSGCQGD 187
Query: 210 SGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKN 255
           SGGPLH      + + GV S+    GC     P V+ RV+ Y++WI N
Sbjct: 188 SGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINN 235

>pdb|1JOU|B Chain B, Crystal Structure Of Native S195a Thrombin With An Unoccupied Active Site Length = 259

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GD+GGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1RD3|B Chain B, 2.5a Structure Of Anticoagulant Thrombin Variant E217k Length = 259

Iteration: 1
 Score = 70.9 bits (172), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWG+GC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGKGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1ORF|A Chain A, The Oligomeric Structure Of Human Granzyme A Reveals The Molecular Determinants Of Substrate Specificity Length = 234

Iteration: 1
 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 89/189 (47%), Gaps = 22/189 (11%)
Query: 81  VNKKTRIVGGQVTYVHQYPWMALLMYKKRF----YCGATLINNLYVLTAAHCVHQGLGIW 136
           +NK+++++ G  +   + P   +++ KK F    Y  AT   +L +L         +  +
Sbjct: 44  LNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTE--KAKINKY 101
Query: 137 VTI-----RGKSFSNKTGI-VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENR-- 188
           VTI     +G      T   V GWG      S SDTL EVE+ I+    C    + N   
Sbjct: 102 VTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNP 161
Query: 189 -ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG--EGCAQENYPGVYAR 245
            I  NM+CAG  +G +DSC GDSG PL    E V    GV S+G    C     PGVY  
Sbjct: 162 VIGMNMVCAGSLRGGRDSCNGDSGSPL--LCEGVFR--GVTSFGLENKCGDPRGPGVYIL 217
Query: 246 VN-RYLTWI 253
           ++ ++L WI
Sbjct: 218 LSKKHLNWI 226

>pdb|1Z8I|B Chain B, Crystal Structure Of The Thrombin Mutant G193a Bound To Ppack Length = 259

Iteration: 1
 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+ DSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEADSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|2XW9|A Chain A, Crystal Structure Of Complement Factor D Mutant S183a Length = 228

Iteration: 1
 Score = 70.5 bits (171), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/107 (36%), Positives = 56/107 (52%), Gaps = 8/107 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           V GWG+    G   D+L  V +P+L  A C ++T ++  IT  ++CA      +DSC+GD
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCA--ESNRRDSCKGD 182
Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           +GGPL         + GVV+ G   C     PG+Y RV  Y  WI +
Sbjct: 183 AGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>pdb|2XXL|A Chain A, Crystal Structure Of Drosophila Grass Clip Serine Protease Of Toll Pathway Length = 408

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 50/131 (38%), Positives = 70/131 (53%), Gaps = 12/131 (9%)
Query: 133 LGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN 192
           L I   ++ K+    T  VTGWG   + GS+SD LL+  VP+   + C + AY   +  +
Sbjct: 244 LPITDELKEKAEQISTYFVTGWGT-TENGSSSDVLLQANVPLQPRSACSQ-AYRRAVPLS 301
Query: 193 MLCAGYPKGE-KDSCQGDSGGPL----HYANETVHHIV--GVVSWG-EGCAQENYPGVYA 244
            LC G   G+ +DSC+GDSGGPL     Y  E    +V  G+VS G   C Q + PG+Y 
Sbjct: 302 QLCVG--GGDLQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYT 359
Query: 245 RVNRYLTWIKN 255
            V  Y+ WI +
Sbjct: 360 NVGEYVQWITD 370

>pdb|2OD3|B Chain B, Human Thrombin Chimera With Human Residues 184a, 186, 186a, 186b, 186c And 222 Replaced By Murine Thrombin Equivalents Length = 259

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 59/118 (50%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAG+   +
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGFKVND 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 TKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKKWIQK 252

>pdb|2OCV|B Chain B, Structural Basis Of Na+ Activation Mimicry In Murine Thrombin Length = 259

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 149 GIVTGWGVQKQGGSTS------DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  ++  +T+        L  V +PI+    CK +    RIT NM CAG+   +
Sbjct: 136 GRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAST-RIRITDNMFCAGFKVND 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+
Sbjct: 195 TKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKAWIQ 251

>pdb|1Z8J|B Chain B, Crystal Structure Of The Thrombin Mutant G193p Bound To Ppack Length = 259

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+ DSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEPDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1VR1|H Chain H, Specifity For Plasminogen Activator Inhibitor-1 Length = 261

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/118 (38%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CA Y   E
Sbjct: 140 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAYYKPDE 198
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 199 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 256

>pdb|2PSX|A Chain A, Crystal Structure Of Human Kallikrein 5 In Complex With Leupeptin Length = 227

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 65/113 (57%), Gaps = 9/113 (7%)
Query: 150 IVTGWGVQKQGGSTSDTLLE-VEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           +V+GWG  K        +L+ + + +LS   C+  AY  +I   M CAG  K  +DSCQG
Sbjct: 120 LVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCED-AYPRQIDDTMFCAG-DKAGRDSCQG 177
Query: 209 DSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTIDA 260
           DSGGP+   N ++    G+VSWG+  CA+ N PGVY  + ++  WI+  TI A
Sbjct: 178 DSGGPV-VCNGSLQ---GLVSWGDYPCARPNRPGVYTNLCKFTKWIQ-ETIQA 225

>pdb|2PUX|B Chain B, Crystal Structure Of Murine Thrombin In Complex With The Extracellular Fragment Of Murine Par3 Length = 258

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 61/117 (52%), Gaps = 12/117 (10%)
Query: 149 GIVTGWGVQKQGGSTS------DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  ++  +T+        L  V +PI+    CK +    RIT NM CAG+   +
Sbjct: 136 GRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAST-RIRITDNMFCAGFKVND 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
               D+C+GD+GGP    +      + +G+VSWGEGC ++   G Y  V R   WI+
Sbjct: 195 TKRGDACEGDAGGPFVMKSPFNNRWYQMGIVSWGEGCDRKGKYGFYTHVFRLKRWIQ 251

>pdb|1OP8|A Chain A, Crystal Structure Of Human Granzyme A Length = 234

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 88/189 (46%), Gaps = 22/189 (11%)
Query: 81  VNKKTRIVGGQVTYVHQYPWMALLMYKKRF----YCGATLINNLYVLTAAHCVHQGLGIW 136
           +NK+++++ G  +   + P   +++ KK F    Y  AT   +L +L         +  +
Sbjct: 44  LNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDPATREGDLKLLQLTE--KAKINKY 101
Query: 137 VTI-----RGKSFSNKTGI-VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENR-- 188
           VTI     +G      T   V GWG      S SDTL EV + I+    C    + N   
Sbjct: 102 VTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVNITIIDRKVCNDRNHYNFNP 161
Query: 189 -ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG--EGCAQENYPGVYAR 245
            I  NM+CAG  +G +DSC GDSG PL    E V    GV S+G    C     PGVY  
Sbjct: 162 VIGMNMVCAGSLRGGRDSCNGDSGSPL--LCEGVFR--GVTSFGLENKCGDPRGPGVYIL 217
Query: 246 VN-RYLTWI 253
           ++ ++L WI
Sbjct: 218 LSKKHLNWI 226

>pdb|2B9L|A Chain A, Crystal Structure Of Prophenoloxidase Activating Factor-Ii From The Beetle Holotrichia Diomphalia Length = 394

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 76/154 (49%), Gaps = 17/154 (11%)
Query: 115 TLINNLYVLTAAHCVHQGLGIWVTI---RGKSFSNKTGIVTGWGVQKQGGST---SDTLL 168
           T++N++ +L     + Q   I       + + F +     +GWG +K+ GS    S+ L 
Sbjct: 227 TVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWG-KKEFGSRHRYSNILK 285
Query: 169 EVEVPILSNAECKKTAYENRI------TPNMLCAGYPKGEKDSCQGDSGGPLHY---ANE 219
           ++++P +   +C+      R+          +CAG  +G KD+C GD G PL      N 
Sbjct: 286 KIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQG-KDTCTGDGGSPLFCPDPRNP 344
Query: 220 TVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           + +  +G+V+WG GC  EN PGVYA V  +  WI
Sbjct: 345 SRYMQMGIVAWGIGCGDENVPGVYANVAHFRNWI 378

>pdb|1ELV|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Complement C1s Protease Length = 333

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 96/267 (35%), Gaps = 90/267 (33%)
Query: 69  DLEKCGPCTCGA----VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 124
           +L KC P  CG       +K RI+GG    +  +PW          + G  LIN  +VLT
Sbjct: 62  ELPKCVP-VCGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLT 117
Query: 125 AAHCV---------------------------------HQGLGIWVTIRGKS-FSNKTGI 150
           AAH V                                 H G  +     G++ F N   +
Sbjct: 118 AAHVVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIAL 177
Query: 151 VTGWGVQKQG---------GSTSD------------------------TLLEVEVPILSN 177
           V      K G         G++SD                         L    +P+   
Sbjct: 178 VRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRDRAVRLKAARLPVAPL 237
Query: 178 AECKKTAYENR--------ITPNMLCAGYPKGEKDSCQGDSGGPLHYA---NETVHHIVG 226
            +CK+   E           TPNM+CAG  KG  DSC+GDSGG        ++T  +  G
Sbjct: 238 RKCKEVKVEKPTADAEAYVFTPNMICAGGEKG-MDSCKGDSGGAFAVQDPNDKTKFYAAG 296
Query: 227 VVSWGEGCAQENYPGVYARVNRYLTWI 253
           +VSWG  C      G+Y RV  Y+ WI
Sbjct: 297 LVSWGPQCGTY---GLYTRVKNYVDWI 320

>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H Length = 226

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 90/231 (38%), Gaps = 70/231 (30%)
Query: 87  IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRG-- 141
           I+GG     H  P+MA + +   K R  CG  L+   +VLTAAHC  QG  I VT+    
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC--QGSSINVTLGAHN 58
Query: 142 ------------------------KSFSNKTGI--------------------------- 150
                                   K+FSN   +                           
Sbjct: 59  IKEQERTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKWTTAVRPLRLPSSKAQVKP 118
Query: 151 -----VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
                V GWG      + + TL EV + +  + +C++  + N      +C G PK  +  
Sbjct: 119 GQLCSVAGWGYVSMS-TLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTG 177
Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
            +GDSGGPL   +       G++S+G    +   PGVY +V+ +L WIK  
Sbjct: 178 FKGDSGGPLVCKDVA----QGILSYGN--KKGTPPGVYIKVSHFLPWIKRT 222

>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor Length = 226

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 61/230 (26%), Positives = 90/230 (39%), Gaps = 70/230 (30%)
Query: 87  IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRG-- 141
           I+GG     H  P+MA + +   K R  CG  L+   +VLTAAHC  QG  I VT+    
Sbjct: 1   IIGGHEAKPHSRPYMAFVQFLQEKSRKRCGGILVRKDFVLTAAHC--QGSSINVTLGAHN 58
Query: 142 ------------------------KSFSNKTGI--------------------------- 150
                                   K+FSN   +                           
Sbjct: 59  IKEQERTQQFIPVKRPIPHPAYNPKNFSNNIMLLQLERKAKWTTAVRPLRLPSSKAQVKP 118
Query: 151 -----VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
                V GWG      + + TL EV + +  + +C++  + N      +C G PK  +  
Sbjct: 119 GQLCSVAGWGYVSMS-TLATTLQEVLLTVQKDCQCERLFHGNYSRATEICVGDPKKTQTG 177
Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            +GDSGGPL   +       G++S+G    +   PGVY +V+ +L WIK 
Sbjct: 178 FKGDSGGPLVCKDVA----QGILSYGN--KKGTPPGVYIKVSHFLPWIKR 221

>pdb|1BBR|E Chain E, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 109

Iteration: 1
 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 51/95 (53%), Gaps = 6/95 (6%)
Query: 166 TLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK---DSCQGDSGGPLHYAN--ET 220
            L  V +P++    CK +    RIT NM CAGY  GE    D+C+GDSGGP    +    
Sbjct: 9   VLQVVNLPLVERPVCKAST-RIRITDNMFCAGYKPGEGKRGDACEGDSGGPFVMKSPYNN 67
Query: 221 VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
             + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 68  RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 102

>pdb|2KAI|B Chain B, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 152

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 151 VTGWGVQKQGGST---SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
            +GWG  + G       D +  V++ +L N  C   A+ +++T +MLCAGY  G KD+C 
Sbjct: 43  ASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCAD-AHPDKVTESMLCAGYLPGGKDTCM 101
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNN 256
           GDSGGPL   N       G+ SWG   C   N P +Y ++  YL WI + 
Sbjct: 102 GDSGGPL-ICNGMWQ---GITSWGHTPCGSANKPSIYTKLIFYLDWIDDT 147

>pdb|1ELT|A Chain A, Structure Of Native Pancreatic Elastase From North Atlantic Salmon At 1.61 Angstroms Resolution Length = 236

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 57/107 (53%), Gaps = 5/107 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA-YENRITPNMLCAGYPKGEKDSCQGD 209
           +TGWG    GG  SD+L +  +P + +A C  +  + + +   M+CAG   G    C GD
Sbjct: 129 ITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGD 186
Query: 210 SGGPLHYANETVHHIVGVVSW--GEGCAQENYPGVYARVNRYLTWIK 254
           SGGPL+      +++ GV S+    GC     P V+ RV+ Y++W+ 
Sbjct: 187 SGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMN 233

>pdb|2PGB|B Chain B, Inhibitor-Free Human Thrombin Mutant C191a-C220a Length = 259

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+ +GDSGGP    +      + +G+VSWGEG  ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDAAEGDSGGPFVMKSPFNNRWYQMGIVSWGEGADRDGKYGFYTHVFRLKKWIQK 252

>pdb|2PKS|C Chain C, Thrombin In Complex With Inhibitor Length = 102

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 166 TLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK---DSCQGDSGGPLHYAN--ET 220
            L  V +PI+    CK +    RIT NM CAGY   E    D+C+GDSGGP    +    
Sbjct: 5   VLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 63
Query: 221 VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
             + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 64  RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 98

>pdb|2HNT|F Chain F, Crystallographic Structure Of Human Gamma-Thrombin Length = 105

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 166 TLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK---DSCQGDSGGPLHYAN--ET 220
            L  V +PI+    CK +    RIT NM CAGY   E    D+C+GDSGGP    +    
Sbjct: 5   VLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNN 63
Query: 221 VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
             + +G+VSWGEGC ++   G Y  V R   WI+ 
Sbjct: 64  RWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWIQK 98

>pdb|1EQ9|A Chain A, Crystal Structure Of Fire Ant Chymotrypsin Complexed To Pmsf Length = 222

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 39/106 (36%), Positives = 62/106 (58%), Gaps = 8/106 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           +TGWG  + GG+T + L E+E+ +    +C++  +  R+  + +C    +GE  +C GDS
Sbjct: 122 LTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQW--RVIDSHICTLTKRGEG-ACHGDS 178
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           GGPL  AN      +G+VS+G  CA    P VY RV+ +++WI  N
Sbjct: 179 GGPL-VANGAQ---IGIVSFGSPCAL-GEPDVYTRVSSFVSWINAN 219

>pdb|1TQ0|B Chain B, Crystal Structure Of The Potent Anticoagulant Thrombin Mutant W215aE217A IN FREE FORM Length = 257

Iteration: 1
 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VS G GC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|3EE0|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF HUMAN Thrombin (Space Group P2(1)2(1)2(1)) Length = 259

Iteration: 1
 Score = 65.1 bits (157), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 12/118 (10%)
Query: 149 GIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  K+      G      L  V +PI+    CK +    RIT NM CAGY   E
Sbjct: 136 GRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDE 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
               D+C+GDSGGP    +      + +G+VS G GC ++   G Y  V R   WI+ 
Sbjct: 195 GKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRDGKYGFYTHVFRLKKWIQK 252

>pdb|1HYL|A Chain A, The 1.8 A Structure Of Collagenase From Hypoderma Lineatum Length = 230

Iteration: 1
 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/233 (25%), Positives = 92/233 (39%), Gaps = 69/233 (29%)
Query: 87  IVGGQVTYVHQYPWMA----LLMYKKRFYCGATLINNLYVLTAAHCVHQG------LGIW 136
           I+ G   Y   +P+ A     L  ++R +CG +LI+N ++LTAAHCVH        LG  
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSA 60
Query: 137 VTIRGKS--------------------------------------------------FSN 146
           V   G++                                                  F N
Sbjct: 61  VQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFEN 120
Query: 147 KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
               V+GWG   Q  + +  L      ++ N  C +      I  + +C     G K  C
Sbjct: 121 IWATVSGWG---QSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDG-KSPC 176
Query: 207 QGDSGGPLHYANETVHHIVGVVSW--GEGCAQENYPGVYARVNRYLTWIKNNT 257
            GDSGGP   +++ +  ++GVVS+  G GC +   P  ++RV  Y+ WI+ NT
Sbjct: 177 FGDSGGPFVLSDKNL--LIGVVSFVSGAGC-ESGKPVGFSRVTSYMDWIQQNT 226

>pdb|1TON|A Chain A, Rat Submaxillary Gland Serine Protease, Tonin. Structure Solution And Refinement At 1.8 Angstroms Resolution Length = 235

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 148 TGIVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
           T + +GWG         S  L  V + +LSN +C +T Y++ +T  MLCAG  +G KD+C
Sbjct: 125 TCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIET-YKDNVTDVMLCAGEMEGGKDTC 183
Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIK 254
            GDSGGPL         + G+ S G   CA+   P +YA++ ++ +WIK
Sbjct: 184 AGDSGGPLICDGV----LQGITSGGATPCAKPKTPAIYAKLIKFTSWIK 228

>pdb|2ZCH|P Chain P, Crystal Structure Of Human Prostate Specific Antigen Complexed With An Activating Antibody Length = 237

Iteration: 1
 Score = 64.7 bits (156), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 7/113 (6%)
Query: 148 TGIVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
           T   +GWG ++ +   T   L  V++ ++SN  C +  +  ++T  MLCAG   G K +C
Sbjct: 127 TCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQV-HPQKVTKFMLCAGRWTGGKSTC 185
Query: 207 QGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTI 258
            GDSGGPL   N  +    G+ SWG E CA    P +Y +V  Y  WIK+  +
Sbjct: 186 SGDSGGPL-VCNGVLQ---GITSWGSEPCALPERPSLYTKVVHYRKWIKDTIV 234

>pdb|4GSO|A Chain A, Structure Of Jararacussin-I Length = 232

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 60/226 (26%), Positives = 87/226 (38%), Gaps = 61/226 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAH------------------- 127
           ++GG    ++++P++A L Y   ++CG TLIN  +V+TAAH                   
Sbjct: 1   VLGGDECDINEHPFLAFL-YSHGYFCGLTLINQEWVVTAAHCDSTNFQMQLGVHSKKVLN 59
Query: 128 -------------CVHQGLG------IWVTIRGKSFSNKTGI-----------------V 151
                        C ++ +       I +    K  SN   I                 +
Sbjct: 60  EDEQTRNPKEKFICPNKNMSEVLDKDIMLIKLDKPISNSKHIAPLSLPSNPPSVGSVCRI 119
Query: 152 TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
            GWG       T   +       L + E  + AY        LCAG  +G KD+C GDSG
Sbjct: 120 MGWGSITIPNETYPDVPYCANINLVDYEVCQGAYNGLPAKTTLCAGVLEGGKDTCVGDSG 179
Query: 212 GPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
           GPL    +      G+VS+G   C Q   PG+Y  V  Y  WI+ N
Sbjct: 180 GPLICNGQ----FQGIVSYGAHSCGQGPKPGIYTNVFDYTDWIQRN 221

>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r Reveals Enzyme-product Like Contacts Length = 242

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY-ENRI---TPNMLCAGYPKGEKD 204
           G V+G+GV ++    +  L  V +P+ +   C+     +NR+   + NM CAG+P  ++D
Sbjct: 128 GYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 185
Query: 205 SCQGDSGGPLHYANETVHHIV--GVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           +CQGDSGG     +      V  G+VSWG GC++    G Y +V  Y+ WIK
Sbjct: 186 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIK 235

>pdb|2AIP|A Chain A, Crystal Structure Of Native Protein C Activator From The Venom Of Copperhead Snake Agkistrodon Contortrix Contortrix Length = 231

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 58/223 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSN 146
           ++GG    ++++ ++AL+ Y     CG TLIN  +VLTA HC    + I++ +      N
Sbjct: 1   VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDRGNMRIYLGMHNLKVLN 59
Query: 147 KTGIVTG-----WGVQKQGGSTSD---TLLEVEVPILSNAE----------------CKK 182
           K  +        + +  +  +  D    L+ +  P+ ++A                 C+ 
Sbjct: 60  KDALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRI 119
Query: 183 TAYENRITPN------------------------------MLCAGYPKGEKDSCQGDSGG 212
             +    +PN                               LCAG  +G KD+C+GDSGG
Sbjct: 120 MGWGTITSPNATLPDVPHCANINILDYAVCQAAYKGLAATTLCAGILEGGKDTCKGDSGG 179
Query: 213 PLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           PL   N     I+ V   G  CAQ   PG+Y +V  Y  WI++
Sbjct: 180 PL-ICNGQFQGILSV--GGNPCAQPRKPGIYTKVFDYTDWIQS 219

>pdb|4H4F|A Chain A, Crystal Structure Of Human Chymotrypsin C (ctrc) Bound To Inhibitor Eglin C From Hirudo Medicinalis Length = 249

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 5/107 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQGD 209
           VTGWG     G  +D L +   P++ +A C +  +   R+   M+CAG   G   +C GD
Sbjct: 128 VTGWGRLWTNGPIADKLQQGLQPVVDHATCSRIDWWGFRVKKTMVCAG-GDGVISACNGD 186
Query: 210 SGGPLHYANET-VHHIVGVVSWG--EGCAQENYPGVYARVNRYLTWI 253
           SGGPL+   E     + G+VS+G   GC     P VY RV+ Y+ WI
Sbjct: 187 SGGPLNCQLENGSWEVFGIVSFGSRRGCNTRKKPVVYTRVSAYIDWI 233

>pdb|1PYT|D Chain D, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 251

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/239 (26%), Positives = 91/239 (38%), Gaps = 67/239 (28%)
Query: 82  NKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLI-------------------- 117
           N   R+VGG+    H +PW   L Y +    R  CG TLI                    
Sbjct: 9   NLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRV 68
Query: 118 ----NNLYVLTAAHCVHQGLG-IWVTIRGKSFSNKTGI---------------------- 150
               NNL V   A  ++ G+  I+V  +  SF  +  I                      
Sbjct: 69  ALGKNNLEVEDEAGSLYVGVDTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPS 128
Query: 151 ------------VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAG 197
                       VTGWG     G  +  L +   P++  A C ++  +   +   M+CAG
Sbjct: 129 EGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAG 188
Query: 198 YPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG--CAQENYPGVYARVNRYLTWIK 254
              G   +C GDSGGPL+   +    + G+VS+G G  C     P V+ RV+ Y+ WI 
Sbjct: 189 -GDGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWIN 246

>pdb|1GPZ|A Chain A, The Crystal Structure Of The Zymogen Catalytic Domain Of Complement Protease C1r Length = 399

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY-ENRI---TPNMLCAGYPKGEKD 204
           G V+G+GV ++    +  L  V +P+ +   C+     +NR+   + NM CAG+P  ++D
Sbjct: 285 GYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 342
Query: 205 SCQGDSGGPLHYANETVHHIV--GVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           +CQGDSGG     +      V  G+VSWG GC++    G Y +V  Y+ WIK
Sbjct: 343 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIK 392

>pdb|1BRU|P Chain P, Structure Of Porcine Pancreatic Elastase Complexed With The Elastase Inhibitor Gr143783 Length = 241

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 60/109 (55%), Gaps = 5/109 (4%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY-ENRITPNMLCAGYPKGEKDSCQGD 209
           VTGWG  +  G++ D L + ++ ++  A C K  +  + +  NM+CAG   G   SC GD
Sbjct: 129 VTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAG-GDGIISSCNGD 187
Query: 210 SGGPLHYANETVH-HIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKN 255
           SGGPL+         + G+VS+G   GC   + P V+ RV+ Y+ WI +
Sbjct: 188 SGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINS 236

>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of Complement Protease C1r Length = 329

Iteration: 1
 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 40/112 (35%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRI---TPNMLCAGYPKGEKD 204
           G V+G+GV ++    +  L  V +P+ +   C+     +NR+   + NM CAG+P  ++D
Sbjct: 217 GYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 274
Query: 205 SCQGDSGGPLHYANETVHHIV--GVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           +CQGDSGG     +      V  G+VSWG GC++    G Y +V  Y+ WIK
Sbjct: 275 ACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIK 324

>pdb|3EDX|B Chain B, Crystal Structure Of The W215aE217A MUTANT OF MURINE THROMBIN Length = 258

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 149 GIVTGWGVQKQGGSTS------DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           G VTGWG  ++  +T+        L  V +PI+    CK +    RIT NM CAG+   +
Sbjct: 136 GRVTGWGNLRETWTTNINEIQPSVLQVVNLPIVERPVCKAST-RIRITDNMFCAGFKVND 194
Query: 203 K---DSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
               D+C+GDSGGP    +      + +G+VS G GC ++   G Y  V R   WI+
Sbjct: 195 TKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSAGAGCDRKGKYGFYTHVFRLKRWIQ 251

>pdb|4E7N|A Chain A, Crystal Structure Of Ahv_tl-I, A Glycosylated Snake-Venom Thrombin- Like Enzyme From Agkistrodon Halys Length = 238

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYPKGEKDSCQ 207
           + GWG +    G+  D    V + +L    C+     +E   T   LCAG  +G KD+C+
Sbjct: 122 IMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCK 181
Query: 208 GDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           GDSGGPL    +      G+ SWG+  CAQ + P  Y +V  +L WI+N
Sbjct: 182 GDSGGPLICNGQ----FQGIASWGDDPCAQPHKPAAYTKVFDHLDWIEN 226

>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease C1r Length = 328

Iteration: 1
 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 62/112 (55%), Gaps = 10/112 (8%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRI---TPNMLCAGYPKGEKD 204
           G V+G+GV ++    +  L  V +P+ +   C+     +NR+   + NM CAG+P  ++D
Sbjct: 217 GYVSGFGVMEE--KIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQD 274
Query: 205 SCQGDSGGPLHYANETVHHIV--GVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           +CQGD+GG     +      V  G+VSWG GC++    G Y +V  Y+ WIK
Sbjct: 275 ACQGDAGGVFAVRDPNTDRWVATGIVSWGIGCSRGY--GFYTKVLNYVDWIK 324

>pdb|1FI8|A Chain A, Rat Granzyme B [n66q] Complexed To Ecotin [81-84 Iepd] Length = 228

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/105 (35%), Positives = 55/105 (52%), Gaps = 6/105 (5%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG     G  SDTL EVE+ +  + +C+          N +CAG PK ++ S +GDS
Sbjct: 125 VAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKRASFRGDS 184
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGPL           G+VS+G+     + P  + +V+ +L+WIK 
Sbjct: 185 GGPLVCKKVA----AGIVSYGQN--DGSTPRAFTKVSTFLSWIKK 223

>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B Length = 227

Iteration: 1
 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 88/230 (38%), Gaps = 69/230 (30%)
Query: 87  IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRG-- 141
           I+GG     H  P+MA LM    K    CG  LI + +VLTAAHC   G  I VT+    
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHC--WGSSINVTLGAHN 58
Query: 142 ------------------------KSFSN------------------------------- 146
                                   K+FSN                               
Sbjct: 59  IKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKP 118
Query: 147 -KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
            +T  V GWG     G  S TL EV++ +  + +C+        +   LC G P+ +K S
Sbjct: 119 GQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTS 178
Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            +GDSGGPL   N+      G+VS+G        P    +V+ ++ WIK 
Sbjct: 179 FKGDSGGPL-VCNKVAQ---GIVSYGRNNGMP--PRACTKVSSFVHWIKK 222

>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho Length = 227

Iteration: 1
 Score = 61.2 bits (147), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 88/230 (38%), Gaps = 69/230 (30%)
Query: 87  IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRG-- 141
           I+GG     H  P+MA LM    K    CG  LI + +VLTAAHC   G  I VT+    
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHC--WGSSINVTLGAHN 58
Query: 142 ------------------------KSFSN------------------------------- 146
                                   K+FSN                               
Sbjct: 59  IKEQEPTQQFIPVKRPIPHPAYNPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKP 118
Query: 147 -KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
            +T  V GWG     G  S TL EV++ +  + +C+        +   LC G P+ +K S
Sbjct: 119 GQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTS 178
Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            +GDSGGPL   N+      G+VS+G        P    +V+ ++ WIK 
Sbjct: 179 FKGDSGGPL-VCNKVAQ---GIVSYGRNNGMP--PRACTKVSSFVHWIKK 222

>pdb|1BQY|A Chain A, Plasminogen Activator (tsv-pa) From Snake Venom Length = 234

Iteration: 1
 Score = 60.8 bits (146), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 172 VPILSNAECKKTAYENRITPNM-LCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW 230
           + IL +A C+ TAY  R   N  LCAG  +G +D+C  DSGGPL   N       G+VSW
Sbjct: 142 INILDHAVCR-TAYSWRQVANTTLCAGILQGGRDTCHFDSGGPL-ICNGIFQ---GIVSW 196
Query: 231 -GEGCAQENYPGVYARVNRYLTWIKN 255
            G  C Q   PGVY +V  YL WIK+
Sbjct: 197 GGHPCGQPGEPGVYTKVFDYLDWIKS 222

>pdb|1SGF|A Chain A, Crystal Structure Of 7s Ngf: A Complex Of Nerve Growth Factor With Four Binding Proteins (serine Proteinases) Length = 240

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 7/109 (6%)
Query: 148 TGIVTGWGVQKQ-GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
           T + +GWG          D L  V + +L N +C K A+E ++T  MLCAG   G   +C
Sbjct: 130 TCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDK-AHEMKVTDAMLCAGEMDGGSYTC 188
Query: 207 QGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIK 254
           + DSGGPL         + G+ SWG E C +   P VY ++ ++ +WI+
Sbjct: 189 EHDSGGPLICDG----ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIR 233

>pdb|1SI5|H Chain H, Protease-Like Domain From 2-Chain Hepatocyte Growth Factor Length = 240

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 141 GKSFSNKTGI-VTGWGVQKQGGSTSDTLLEV-EVPILSNAECKKTAYENRITPNM--LCA 196
           G +   KT   V GWG    G    D LL V  + I+ N +C +  +  ++T N   +CA
Sbjct: 109 GSTIPEKTSCSVYGWGYT--GLINYDGLLRVAHLYIMGNEKCSQ-HHRGKVTLNESEICA 165
Query: 197 GYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           G  K     C+GD GGPL      +  ++GV+  G GCA  N PG++ RV  Y  WI
Sbjct: 166 GAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222

>pdb|1SHY|A Chain A, The Crystal Structure Of Hgf Beta-Chain In Complex With The Sema Domain Of The Met Receptor Length = 234

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 58/117 (49%), Gaps = 7/117 (5%)
Query: 141 GKSFSNKTGI-VTGWGVQKQGGSTSDTLLEV-EVPILSNAECKKTAYENRITPNM--LCA 196
           G +   KT   V GWG    G    D LL V  + I+ N +C +  +  ++T N   +CA
Sbjct: 109 GSTIPEKTSCSVYGWGYT--GLINYDGLLRVAHLYIMGNEKCSQ-HHRGKVTLNESEICA 165
Query: 197 GYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           G  K     C+GD GGPL      +  ++GV+  G GCA  N PG++ RV  Y  WI
Sbjct: 166 GAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWI 222

>pdb|1EUF|A Chain A, Bovine Duodenase(New Serine Protease), Crystal Structure Length = 227

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 7/103 (6%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG       ++D L EV++ + S  +C    ++N I    +CAG P   K+S  GDS
Sbjct: 124 VAGWGRLGVNMPSTDKLQEVDLEVQSEEKCI-ARFKNYIPFTQICAGDPSKRKNSFSGDS 182
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGPL   N       G+VS+G        P VY R++ +L+WI
Sbjct: 183 GGPL-VCNGVAQ---GIVSYGRN--DGTTPDVYTRISSFLSWI 219

>pdb|3S9A|A Chain A, Russell's Viper Venom Serine Proteinase, Rvv-V (Closed-Form) Length = 234

Iteration: 1
 Score = 58.5 bits (140), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/225 (27%), Positives = 86/225 (38%), Gaps = 59/225 (26%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKR--FYCGATLINNLYVLTAAHCVHQGLGIWVTI----- 139
           +VGG    ++++P++  L        +C   LIN  +VLTAAHC  + + I + +     
Sbjct: 1   VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRNIRIKLGMHSKNI 60
Query: 140 ----------RGKSFSNKTGIVTGW-----------------------------GVQKQ- 159
                     RGK F   T    G                              GV  + 
Sbjct: 61  RNEDEQIRVPRGKYFCLNTKFPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRC 120
Query: 160 ---GGSTSDTLLEVEVPILSNAECKKTAYENRITP------NMLCAGYPKGEKDSCQGDS 210
              G     T    +VP  +N    K  +   + P        LCAG  KG +D+C GDS
Sbjct: 121 RIMGWGKISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDS 180
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGPL   N  +H IV   S  E C Q   P VY +V  Y  WI++
Sbjct: 181 GGPL-ICNGEMHGIVAGGS--EPCGQHLKPAVYTKVFDYNNWIQS 222

>pdb|2RDL|A Chain A, Hamster Chymase 2 Length = 226

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/177 (30%), Positives = 81/177 (45%), Gaps = 17/177 (9%)
Query: 85  TRIVGGQVTYVHQYPWMALLMYKKRF----YCGATLINNLYVLTAAHCVHQGLGI-WVTI 139
           T ++G     V +  W  L + +K+F    Y    ++N++ +L      +  LG+  + I
Sbjct: 52  TVLLGAHNKKVKEDTWQKLEV-EKQFPHPKYDDRLVLNDIMLLKLKEKANLTLGVGTLPI 110
Query: 140 RGKSFSNKTGIV---TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCA 196
             KS S   G V    GWG        SDTL EV++ IL    CK   +E+      LC 
Sbjct: 111 SAKSNSIPPGRVCRAVGWGRTNVNEPPSDTLQEVKMRILDPQACKH--FEDFHQEPQLCV 168
Query: 197 GYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           G PK  ++  +GDSGGPL  A        G+ S+    A+   P V+ R++ Y  WI
Sbjct: 169 GNPKKIRNVYKGDSGGPLLCAGIA----QGIASYVLRNAKP--PSVFTRISHYRPWI 219

>pdb|1AO5|A Chain A, Mouse Glandular Kallikrein-13 (Prorenin Converting Enzyme) Length = 237

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 7/111 (6%)
Query: 150 IVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           + +GWG +        D L  V + +L N  C K  Y  ++T  MLCAG   G KD+C+ 
Sbjct: 129 LASGWGSITPTRWQKPDDLQCVFITLLPNENCAKV-YLQKVTDVMLCAGEMGGGKDTCRD 187
Query: 209 DSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI 258
           DSGGPL         + G  S+G   C +   P +Y  + ++ +WIK+  +
Sbjct: 188 DSGGPLICDG----ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMM 234

>pdb|1OP2|A Chain A, Crystal Structure Of Aav-Sp-Ii, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 65/229 (28%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSN 146
           ++GG    ++++ ++        F+CG TLIN  +V+TAAHC      + + +  K   N
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKKVLN 60
Query: 147 --------KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAE-----------------CK 181
                   K   +       +       L++++ PI SN++                 C+
Sbjct: 61  EDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPI-SNSKHIAPLSLPSSPPSVGSVCR 119
Query: 182 KTAYENRITP--------------NML----C-AGYP--------------KGEKDSCQG 208
              +   ITP              N+L    C AGYP              +G KD+C G
Sbjct: 120 IMGW-GSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGG 178
Query: 209 DSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
           DSGGPL    +      G+VS+G   C Q   PG+Y  V  Y  WI+ N
Sbjct: 179 DSGGPLICNGQ----FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRN 223

>pdb|1OP0|A Chain A, Crystal Structure Of Aav-sp-i, A Glycosylated Snake Venom Serine Proteinase From Agkistrodon Acutus Length = 234

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 91/229 (39%), Gaps = 65/229 (28%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSN 146
           ++GG    ++++ ++        F+CG TLIN  +V+TAAHC      + + +  K   N
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTDFQMQLGVHSKKVLN 60
Query: 147 --------KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAE-----------------CK 181
                   K   +       +       L++++ PI SN++                 C+
Sbjct: 61  EDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPI-SNSKHIAPLSLPSSPPSVGSVCR 119
Query: 182 KTAYENRITP--------------NML----C-AGYP--------------KGEKDSCQG 208
              +   ITP              N+L    C AGYP              +G KD+C G
Sbjct: 120 IMGW-GSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGG 178
Query: 209 DSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
           DSGGPL    +      G+VS+G   C Q   PG+Y  V  Y  WI+ N
Sbjct: 179 DSGGPLICNGQ----FQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRN 223

>pdb|1PYT|C Chain C, Ternary Complex Of Procarboxypeptidase A, Proproteinase E, And Chymotrypsinogen C Length = 253

Iteration: 1
 Score = 54.3 bits (129), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 54/113 (47%), Gaps = 9/113 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQGD 209
           ++GWG    GG   D L E  +P++    C +  +    +   M+CAG     +  C GD
Sbjct: 142 ISGWGRLYTGGPLPDKLQEALLPVVDYEHCSQYDWWGITVKKTMVCAG--GDTRSGCDGD 199
Query: 210 SGGPLHY----ANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI 258
           SGGPL+      +  VH +   VS   GC     P V+ RV+ ++ WI N TI
Sbjct: 200 SGGPLNCPAADGSWQVHGVTSFVS-AFGCNTIKKPTVFTRVSAFIDWI-NETI 250

>pdb|1FY3|A Chain A, [g175q]hbp, A Mutant Of Human Heparin Binding Protein (cap37) Length = 225

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 80/227 (35%), Gaps = 74/227 (32%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH-QGLGIWVTIRG---- 141
           IVGG+     Q+P++A +  + R +CG  LI+  +V+TAA C   Q  G+   + G    
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 142 --------KSFS---------------------------NKTGIVT-------------- 152
                   ++FS                           N T  VT              
Sbjct: 61  RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAG 120
Query: 153 ------GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
                 GWG Q+ GG  S     V V +    +C+         PN +C G        C
Sbjct: 121 TRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR---------PNNVCTGVLTRRGGIC 171
Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
            GD G PL    E + H V   S G  C +   P  + RV  +  WI
Sbjct: 172 NGDQGTPL--VCEGLAHGVASFSLGP-CGRG--PDFFTRVALFRDWI 213

>pdb|3N7O|A Chain A, X-Ray Structure Of Human Chymase In Complex With Small Molecule Inhibitor Length = 226

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG        SDTL EV++ ++    C  + + +      LC G P+  K + +GDS
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC--SHFRDFDHNLQLCVGNPRKTKSAFKGDS 182
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGPL  A        G+VS+G   A+   P V+ R++ Y  WI
Sbjct: 183 GGPLLCAGAA----QGIVSYGRSDAKP--PAVFTRISHYQPWI 219

>pdb|1PJP|A Chain A, The 2.2 A Crystal Structure Of Human Chymase In Complex With Succinyl- Ala-Ala-Pro-Phe-Chloromethylketone Length = 226

Iteration: 1
 Score = 53.9 bits (128), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG        SDTL EV++ ++    C  + + +      LC G P+  K + +GDS
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC--SHFRDFDHNLQLCVGNPRKTKSAFKGDS 182
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGPL  A        G+VS+G   A+   P V+ R++ Y  WI
Sbjct: 183 GGPLLCAGAA----QGIVSYGRSDAKP--PAVFTRISHYQPWI 219

>pdb|1A7S|A Chain A, Atomic Resolution Structure Of Hbp Length = 225

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 57/227 (25%), Positives = 80/227 (35%), Gaps = 74/227 (32%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH-QGLGIWVTIRG---- 141
           IVGG+     Q+P++A +  + R +CG  LI+  +V+TAA C   Q  G+   + G    
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 142 --------KSFS---------------------------NKTGIVT-------------- 152
                   ++FS                           N T  VT              
Sbjct: 61  RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAG 120
Query: 153 ------GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
                 GWG Q+ GG  S     V V +    +C+         PN +C G        C
Sbjct: 121 TRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR---------PNNVCTGVLTRRGGIC 171
Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
            GD G PL    E + H V   S G  C +   P  + RV  +  WI
Sbjct: 172 NGDGGTPL--VCEGLAHGVASFSLGP-CGRG--PDFFTRVALFRDWI 213

>pdb|1KLT|A Chain A, Crystal Structure Of Pmsf-Treated Human Chymase At 1.9 Angstroms Resolution Length = 226

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG        SDTL EV++ ++    C  + + +      LC G P+  K + +GDS
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC--SHFRDFDHNLQLCVGNPRKTKSAFKGDS 182
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGPL  A        G+VS+G   A+   P V+ R++ Y  WI
Sbjct: 183 GGPLLCAGVA----QGIVSYGRSDAKP--PAVFTRISHYRPWI 219

>pdb|2ASU|B Chain B, Crystal Structure Of The Beta-Chain Of HgflMSP Length = 234

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEV-PILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           + GWG  K  G+ +DT+L V +  ++SN EC    +  R+  + +C         +C+GD
Sbjct: 121 IAGWGETK--GTGNDTVLNVALLNVISNQECN-IKHRGRVRESEMCTEGLLAPVGACEGD 177
Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
            GGPL         + G++     CA+  +P V+ RV+ ++ WI
Sbjct: 178 YGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWI 221

>pdb|4AFQ|A Chain A, Human Chymase - Fynomer Complex Length = 226

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG        SDTL EV++ ++    C  + + +      LC G P+  K + +GDS
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC--SHFRDFDHNLQLCVGNPRKTKSAFKGDS 182
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGPL  A        G+VS+G   A+   P V+ R++ Y  WI
Sbjct: 183 GGPLLCAGVA----QGIVSYGRSDAKP--PAVFTRISHYRPWI 219

>pdb|1NN6|A Chain A, Human Pro-Chymase Length = 228

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/103 (33%), Positives = 51/103 (49%), Gaps = 8/103 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG        SDTL EV++ ++    C  + + +      LC G P+  K + +GDS
Sbjct: 127 VAGWGRTGVLKPGSDTLQEVKLRLMDPQAC--SHFRDFDHNLQLCVGNPRKTKSAFKGDS 184
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGPL  A        G+VS+G   A+   P V+ R++ Y  WI
Sbjct: 185 GGPLLCAGVA----QGIVSYGRSDAKP--PAVFTRISHYRPWI 221

>pdb|1KYN|B Chain B, Cathepsin-G Length = 235

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 73/230 (31%)
Query: 87  IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTA-------------AHCVH 130
           I+GG+ +  H  P+MA L  +    +  CG  L+   +VLTA             AH + 
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQ 60
Query: 131 ------QGLGIWVTIRGKSFSNKT------------------------------GI---- 150
                 Q +     IR   ++ +T                              G+    
Sbjct: 61  RRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGT 120
Query: 151 ---VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYPKGEKD 204
              V GWG V  + G+  DTL EV++ +  + +C +   +Y+ R     +C G  +  K 
Sbjct: 121 LCTVAGWGRVSMRRGT--DTLREVQLRVQRDRQCLRIFGSYDPR---RQICVGDRRERKA 175
Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           + +GDSGGPL   N   H   G+VS+G+       P V+ RV+ +L WI+
Sbjct: 176 AFKGDSGGPL-LCNNVAH---GIVSYGKSSGVP--PEVFTRVSSFLPWIR 219

>pdb|1AU8|A Chain A, Human Cathepsin G Length = 224

Iteration: 1
 Score = 52.8 bits (125), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/230 (25%), Positives = 94/230 (40%), Gaps = 73/230 (31%)
Query: 87  IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTA-------------AHCVH 130
           I+GG+ +  H  P+MA L  +    +  CG  L+   +VLTA             AH + 
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQ 60
Query: 131 ------QGLGIWVTIRGKSFSNKT------------------------------GI---- 150
                 Q +     IR   ++ +T                              G+    
Sbjct: 61  RRENTQQHITARRAIRHPQYNQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGT 120
Query: 151 ---VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYPKGEKD 204
              V GWG V  + G+  DTL EV++ +  + +C +   +Y+ R     +C G  +  K 
Sbjct: 121 LCTVAGWGRVSMRRGT--DTLREVQLRVQRDRQCLRIFGSYDPR---RQICVGDRRERKA 175
Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           + +GDSGGPL   N   H   G+VS+G+       P V+ RV+ +L WI+
Sbjct: 176 AFKGDSGGPL-LCNNVAH---GIVSYGKSSGVP--PEVFTRVSSFLPWIR 219

>pdb|3S69|A Chain A, Crystal Structure Of Saxthrombin Length = 234

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Query: 172 VPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG 231
           + +L +A C+    E       LCAG  +G KD+C GDSGGPL    +      G+VS+G
Sbjct: 142 INLLDDAVCQAGYPELLTEYRTLCAGILEGGKDTCGGDSGGPLICNGQ----FQGIVSFG 197
Query: 232 EG-CAQENYPGVYARVNRYLTWIKN 255
              C Q   PGVY +V  Y  WI++
Sbjct: 198 AHPCGQGLKPGVYTKVFDYNHWIQS 222

>pdb|3RP2|A Chain A, The Structure Of Rat Mast Cell Protease Ii At 1.9-Angstroms Resolution Length = 224

Iteration: 1
 Score = 51.2 bits (121), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 38/103 (36%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 152 TGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
            GWG       TS TL EVE+ I+    C     YE +     +C G P   + +  GDS
Sbjct: 126 AGWGKTGVRDPTSYTLREVELRIMDEKACVDYRYYEYKF---QVCVGSPTTLRAAFMGDS 182
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           GGPL  A   V H  G+VS+G   A+   P ++ RV+ Y+ WI
Sbjct: 183 GGPLLCAG--VAH--GIVSYGHPDAKP--PAIFTRVSTYVPWI 219

>pdb|3G01|A Chain A, Structure Of Grc Mutant E192rE193G Length = 227

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 6/105 (5%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG     G    TL EV++ +  +  C+     +    N +C G  K +  S +GDS
Sbjct: 125 VAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFRGDS 184
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGPL           G+VS+G+     + P V+ RV  +++WIK 
Sbjct: 185 GGPLVCKRAA----AGIVSYGQ--TDGSAPQVFTRVLSFVSWIKK 223

>pdb|1FON|A Chain A, Crystal Structure Of Bovine Procarboxypeptidase A-S6 Subunit Iii, A Highly Structured Truncated Zymogen E Length = 240

Iteration: 1
 Score = 50.8 bits (120), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 50/108 (46%), Gaps = 8/108 (7%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQGD 209
           ++GWG    GG   D L +  +P +    C +  +    +   M+CAG     +  C GD
Sbjct: 129 ISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAG--GDTRSGCNGD 186
Query: 210 SGGPLHY----ANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           SGGPL+      +  VH +   VS   GC     P V+ RV+ ++ WI
Sbjct: 187 SGGPLNCPAADGSWQVHGVTSFVS-AFGCNTIKKPTVFTRVSAFIDWI 233

>pdb|4F4O|C Chain C, Structure Of The Haptoglobin-Haemoglobin Complex Length = 347

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 57/130 (43%), Gaps = 22/130 (16%)
Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP----------------- 191
           G V+GWG +    + ++ L  V +P+    +C +  YE    P                 
Sbjct: 220 GYVSGWG-RNANLNFTEHLKYVMLPVADQEKCVQ-YYEGSTVPEKKTPKSPVGVQPILNE 277
Query: 192 NMLCAGYPKGEKDSCQGDSGGPL--HYANETVHHIVGVVSWGEGCAQENYPGVYARVNRY 249
           +  CAG  K ++D+C GD+G     H  ++   +  G++S+ + C    Y GVY RV   
Sbjct: 278 HTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRTAEY-GVYVRVTSI 336
Query: 250 LTWIKNNTID 259
           L WI+    D
Sbjct: 337 LDWIQTTIAD 346

>pdb|1FY1|A Chain A, [r23s,F25e]hbp, A Mutant Of Human Heparin Binding Protein (Cap37) Length = 225

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 78/227 (34%), Gaps = 74/227 (32%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH-QGLGIWVTIRG---- 141
           IVGG+     Q+P++A +  +    CG  LI+  +V+TAA C   Q  G+   + G    
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGSHECGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60
Query: 142 --------KSFS---------------------------NKTGIVT-------------- 152
                   ++FS                           N T  VT              
Sbjct: 61  RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAG 120
Query: 153 ------GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
                 GWG Q+ GG  S     V V +    +C+         PN +C G        C
Sbjct: 121 TRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR---------PNNVCTGVLTRRGGIC 171
Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
            GD G PL    E + H V   S G  C +   P  + RV  +  WI
Sbjct: 172 NGDGGTPL--VCEGLAHGVASFSLGP-CGRG--PDFFTRVALFRDWI 213

>pdb|1GVZ|A Chain A, Prostate Specific Antigen (Psa) From Stallion Seminal Plasma Length = 237

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 148 TGIVTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSC 206
           T   +GWG +       S TL  VE+ + SN +C + AY  ++T  +LCA +       C
Sbjct: 127 TCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKCAR-AYPEKMTEFVLCATHRDDSGSIC 185
Query: 207 QGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIK 254
            GDSGG L    + V    G+ SWG   CA  N   V+ +V  +  WIK
Sbjct: 186 LGDSGGAL--ICDGVFQ--GITSWGYSECADFNDNFVFTKVMPHKKWIK 230

>pdb|3FZZ|A Chain A, Structure Of Grc Length = 227

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 6/105 (5%)
Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG     G    TL EV++ +  +  C+     +    N +C G  K +  S + DS
Sbjct: 125 VAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDS 184
Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGPL           G+VS+G+     + P V+ RV  +++WIK 
Sbjct: 185 GGPLVCKRAA----AGIVSYGQ--TDGSAPQVFTRVLSFVSWIKK 223

>pdb|1FUJ|A Chain A, Pr3 (Myeloblastin) Length = 221

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/106 (28%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           +  GWG        +  L E+ V +++   C+         P+ +C   P+ +   C GD
Sbjct: 126 LAMGWGRVGAHDPPAQVLQELNVTVVT-FFCR---------PHNICTFVPRRKAGICFGD 175
Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           SGGPL   +  +  I   V W  GCA   +P  + RV  Y+ WI++
Sbjct: 176 SGGPL-ICDGIIQGIDSFVIW--GCATRLFPDFFTRVALYVDWIRS 218

>pdb|2KAI|A Chain A, Refined 2.5 Angstroms X-Ray Crystal Structure Of The Complex Formed By Porcine Kallikrein A And The Bovine Pancreatic Trypsin Inhibitor. Crystallization, Patterson Search, Structure Determination, Refinement, Structure And Comparison With Its Components And With The Bovine Trypsin- Pancreatic Trypsin Inhibitor Complex Length = 80

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSN 146
           I+GG+    + +PW   + +   F CG  L+N  +VLTAAHC +    +W+  R   F N
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKNDNYEVWLG-RHNLFEN 59
Query: 147 KT 148
           + 
Sbjct: 60  EN 61

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 128
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42

>pdb|1HNE|E Chain E, Structure Of Human Neutrophil Elastase In Complex With A Peptide Chloromethyl Ketone Inhibitor At 1.84-Angstroms Resolution Length = 218

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           +  GWG+  +    +  L E+ V ++++  C+++          +C      +   C GD
Sbjct: 123 LAMGWGLLGRNRGIASVLQELNVTVVTSL-CRRSN---------VCTLVRGRQAGVCFGD 172
Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           SG PL   N  +H I   V    GCA   YP  +A V +++ WI +
Sbjct: 173 SGSPL-VCNGLIHGIASFVR--GGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|2WIN|I Chain I, C3 Convertase (C3bbb) Stabilized By Scin Length = 507

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 189 ITPNMLCAG--YPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG 231
           +TP  LC G   P  + ++C+GDSGGPL     +    VGV+SWG
Sbjct: 417 VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 461

>pdb|1DLE|A Chain A, Factor B Serine Protease Domain Length = 298

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 189 ITPNMLCAG--YPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG 231
           +TP  LC G   P  + ++C+GDSGGPL     +    VGV+SWG
Sbjct: 210 VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 254

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 128
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42

>pdb|1PPF|E Chain E, X-Ray Crystal Structure Of The Complex Of Human Leukocyte Elastase (Pmn Elastase) And The Third Domain Of The Turkey Ovomucoid Inhibitor Length = 218

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           +  GWG+  +    +  L E+ V +++ + C+++          +C      +   C GD
Sbjct: 123 LAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRSN---------VCTLVRGRQAGVCFGD 172
Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           SG PL   N  +H I   V    GCA   YP  +A V +++ WI +
Sbjct: 173 SGSPL-VCNGLIHGIASFVR--GGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|1RRK|A Chain A, Crystal Structure Analysis Of The Bb Segment Of Factor B Length = 497

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 189 ITPNMLCAG--YPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG 231
           +TP  LC G   P  + ++C+GDSGGPL     +    VGV+SWG
Sbjct: 409 VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 453

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 128
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42

>pdb|1PPG|E Chain E, The Refined 2.3 Angstroms Crystal Structure Of Human Leukocyte Elastase In A Complex With A Valine Chloromethyl Ketone Inhibitor Length = 218

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           +  GWG+  +    +  L E+ V +++ + C+++          +C      +   C GD
Sbjct: 123 LAMGWGLLGRNRGIASVLQELNVTVVT-SLCRRSN---------VCTLVRGRQAGVCFGD 172
Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           SG PL   N  +H I   V    GCA   YP  +A V +++ WI +
Sbjct: 173 SGSPL-VCNGLIHGIASFVR--GGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|2RG3|A Chain A, Covalent Complex Structure Of Elastase Length = 218

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 128
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHC
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHC 42

>pdb|3HRZ|D Chain D, Cobra Venom Factor (Cvf) In Complex With Human Factor B Length = 741

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 189 ITPNMLCAG--YPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG 231
           +TP  LC G   P  + ++C+GDSGGPL     +    VGV+SWG
Sbjct: 651 VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 695

>pdb|2OK5|A Chain A, Human Complement Factor B Length = 752

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 189 ITPNMLCAG--YPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG 231
           +TP  LC G   P  + ++C+GDSGGPL     +    VGV+SWG
Sbjct: 661 VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 705

>pdb|2XWB|F Chain F, Crystal Structure Of Complement C3b In Complex With Factors B And D Length = 732

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Query: 189 ITPNMLCAG--YPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG 231
           +TP  LC G   P  + ++C+GDSGGPL     +    VGV+SWG
Sbjct: 642 VTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWG 686

>pdb|1B0F|A Chain A, Crystal Structure Of Human Neutrophil Elastase With Mdl 101, 146 Length = 218

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/106 (26%), Positives = 48/106 (45%), Gaps = 13/106 (12%)
Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           +  GWG+  +    +  L E+ V ++++  C+++          +C      +   C GD
Sbjct: 123 LAMGWGLLGRNRGIASVLQELNVTVVTSL-CRRSN---------VCTLVRGRQAGVCFGD 172
Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           SG PL   N  +H I   V    GCA   YP  +A V +++ WI +
Sbjct: 173 SGSPL-VCNGLIHGIASFVR--GGCASGLYPDAFAPVAQFVNWIDS 215

>pdb|1BBR|H Chain H, The Structure Of Residues 7-16 Of The A Alpha Chain Of Human Fibrinogen Bound To Bovine Thrombin At 2.3 Angstroms Resolution Length = 150

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 87  IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCV 129
           IV GQ   V   PW  +L  K  +   CGA+LI++ +VLTAAHC+
Sbjct: 1   IVEGQDAEVGLSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCL 45

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	260
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	4e-61
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	7e-15
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	2e-60
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	1e-17
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	3e-60
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	4e-16
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	6e-60
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	2e-14
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	7e-59
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	8e-17
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	7e-58
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	8e-14
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	3e-57
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	5e-13
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	4e-57
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	7e-17
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	1e-56
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	2e-13
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	2e-56
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	5e-56
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	8e-16
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	2e-55
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	4e-15
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	3e-55
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	1e-14
1aut_C	250	Activated protein C; serine proteinase, plasma cal	5e-55
1aut_C	250	Activated protein C; serine proteinase, plasma cal	1e-14
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	3e-54
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	5e-16
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	3e-54
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	2e-13
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	3e-54
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	1e-12
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	4e-54
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	8e-19
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	7e-54
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	1e-17
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	1e-53
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	7e-14
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	2e-53
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	4e-15
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	2e-52
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	2e-17
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	2e-52
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	6e-13
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	3e-52
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	4e-24
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	1e-51
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	1e-51
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	2e-13
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	2e-51
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	2e-15
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	8e-51
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	3e-19
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	1e-50
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	5e-15
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	1e-50
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	3e-50
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	2e-11
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	4e-50
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	7e-11
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	8e-50
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	1e-16
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	8e-50
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	3e-13
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	1e-49
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	6e-15
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	1e-49
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	7e-09
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	3e-49
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	5e-49
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	2e-13
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	4e-48
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	4e-24
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	4e-48
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	2e-13
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	4e-48
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	6e-18
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	5e-48
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	3e-13
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	6e-48
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	1e-15
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	6e-48
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	4e-18
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	7e-48
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	4e-11
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	8e-48
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	8e-13
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	1e-47
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	2e-12
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	2e-47
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	5e-14
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	2e-47
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	3e-47
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	5e-15
2xrc_A	565	Human complement factor I; immune system, hydrolas	3e-47
2xrc_A	565	Human complement factor I; immune system, hydrolas	4e-15
2aiq_A	231	Protein C activator; snake venom serine proteinase	4e-47
2aiq_A	231	Protein C activator; snake venom serine proteinase	1e-14
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	4e-47
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	3e-15
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	5e-47
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	1e-14
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	5e-47
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	1e-11
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	5e-47
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	8e-47
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	8e-11
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	8e-47
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	6e-12
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	8e-47
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	6e-16
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	1e-46
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	2e-11
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	2e-46
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	1e-13
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	2e-46
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	1e-13
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	2e-46
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	1e-13
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	2e-46
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	3e-11
1md8_A	329	C1R complement serine protease; innate immunity, a	3e-46
1md8_A	329	C1R complement serine protease; innate immunity, a	2e-15
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	3e-46
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	2e-11
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	5e-46
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	2e-15
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	6e-46
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	7e-08
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	8e-46
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	1e-13
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	8e-46
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	2e-13
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	9e-46
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	4e-12
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	1e-45
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	2e-14
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	2e-45
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	6e-13
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	2e-45
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	5e-15
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	2e-45
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	1e-13
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	2e-45
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	6e-14
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	3e-45
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	2e-11
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	4e-45
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	9e-12
1gpz_A	399	Complement C1R component; hydrolase, activation, i	5e-45
1gpz_A	399	Complement C1R component; hydrolase, activation, i	4e-15
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	6e-45
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	7e-15
1elv_A	333	Complement C1S component; trypsin-like serin prote	1e-44
1elv_A	333	Complement C1S component; trypsin-like serin prote	5e-17
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	3e-44
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	3e-14
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	4e-44
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	4e-11
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	1e-43
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	1e-16
1a7s_A	225	Heparin binding protein; serine protease homolog,	2e-42
1a7s_A	225	Heparin binding protein; serine protease homolog,	6e-14
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	6e-42
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	5e-15
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	2e-41
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	1e-11
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	5e-41
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	4e-09
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	9e-38
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	1e-13
3hrz_D	741	Complement factor B; serine protease, glycosilated	8e-33
3hrz_D	741	Complement factor B; serine protease, glycosilated	2e-09
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	1e-32
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	8e-17
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	3e-15
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	3e-12
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	1e-10
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	9e-07

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score =  191 bits (487), Expect = 4e-61
 Identities = 44/118 (37%), Positives = 69/118 (58%), Gaps = 1/118 (0%)

Query: 141 GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPK 200
             +++  T  V GWG  ++GGS    LL+  VP +S+A C+ ++    +   M+CAGY  
Sbjct: 104 TTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEMICAGYDT 163

Query: 201 GEKDSCQGDSGGPLHYANET-VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
            ++D+CQGDSGGP+   +       VG+VSWGEGCA++   GVY  V+ + + I +  
Sbjct: 164 KQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAA 221

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Length = 224

 Score = 70.7 bits (174), Expect = 7e-15
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 4/44 (9%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           +VGG      ++P+M  L       CG  L     VLTAAHCV 
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVS 40

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score =  189 bits (483), Expect = 2e-60
 Identities = 46/114 (40%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
               +G V+GWG     G ++  L  + VP++  A C + + +  IT NM CAG+ +G +
Sbjct: 120 LKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR-STKFTITNNMFCAGFHEGGR 178

Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSCQGDSGGP     E    + G++SWGE CA +   G+Y +V+RY+ WIK  T
Sbjct: 179 DSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C* Length = 235

 Score = 78.4 bits (194), Expect = 1e-17
 Identities = 17/45 (37%), Positives = 28/45 (62%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV  
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVET 45

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score =  189 bits (483), Expect = 3e-60
 Identities = 47/114 (41%), Positives = 67/114 (58%), Gaps = 1/114 (0%)

Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + KTGIV+G+G   + G  S  L  +EVP +    CK  +    IT NM CAGY   ++
Sbjct: 120 MTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKL-SSSFIITQNMFCAGYDTKQE 178

Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           D+CQGDSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  + 
Sbjct: 179 DACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSM 232

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Length = 241

 Score = 74.2 bits (183), Expect = 4e-16
 Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 87  IVGGQVTYVHQYPWMALLM-YKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTI 139
           IVGGQ     + PW ALL+  +   +CG T+++  Y+LTAAHC++Q     V +
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRV 54

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score =  188 bits (480), Expect = 6e-60
 Identities = 53/109 (48%), Positives = 75/109 (68%)

Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           IVTGWG   +GG+T D L +V VP++S+ +C+     + I  +M+CAG P+G KDSCQGD
Sbjct: 129 IVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEILDSMICAGVPEGGKDSCQGD 188

Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI 258
           SGGPL  ++    ++ G+VSWG GCA+  YPGVY  V+ ++ WIK N +
Sbjct: 189 SGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANAV 237

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2 Length = 237

 Score = 69.5 bits (171), Expect = 2e-14
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 130
           IVGG    + ++P+              +CGA++ N  Y +TA HCV+
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVY 48

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score =  185 bits (473), Expect = 7e-59
 Identities = 52/112 (46%), Positives = 68/112 (60%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
             +   + GWG     G+T+D L E +VP+LSN  C++   E  IT NM+CAGY +G  D
Sbjct: 122 PGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQMPEYNITENMICAGYEEGGID 181

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           SCQGDSGGPL         + GV S+G  CA  N PGVYARV+R+  WI++ 
Sbjct: 182 SCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSF 233

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B Length = 235

 Score = 76.1 bits (188), Expect = 8e-17
 Identities = 18/44 (40%), Positives = 29/44 (65%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           IVGG       +PW+  L Y  R  CGA+L+++ ++++AAHCV+
Sbjct: 1   IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVY 44

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score =  183 bits (467), Expect = 7e-58
 Identities = 50/113 (44%), Positives = 71/113 (62%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
                 VTGWG  K+ G   + L +V +P+++N EC+K   + +IT  M+CAGY +G KD
Sbjct: 123 IYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQKRYQDYKITQRMVCAGYKEGGKD 182

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           +C+GDSGGPL   +  +  +VG+ SWGEGCA+   PGVY +V  Y+ WI   T
Sbjct: 183 ACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKT 235

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Length = 241

 Score = 68.0 bits (167), Expect = 8e-14
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 87  IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 130
           IVGG  +   ++PW   L  K   +R  CG +LI + +VLTAAHC  
Sbjct: 1   IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFD 47

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score =  182 bits (463), Expect = 3e-57
 Identities = 52/107 (48%), Positives = 71/107 (66%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 129 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 188

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 189 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 235

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Length = 238

 Score = 65.7 bits (161), Expect = 5e-13
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 87  IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 130
           IVGG  +   ++PW   L      +R  CG ++I N ++LTAAHC +
Sbjct: 1   IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFY 47

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score =  182 bits (463), Expect = 4e-57
 Identities = 44/117 (37%), Positives = 64/117 (54%), Gaps = 4/117 (3%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT----AYENRITPNMLCAGYPK 200
             +  +V+GWG     G+T+  L+ + VP L   +C +          IT  M CAGY  
Sbjct: 123 FVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQSRKVGDSPNITEYMFCAGYSD 182

Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           G KDSC+GDSGGP         ++ G+VSWG+GCA   + GVY RV++Y+ W++   
Sbjct: 183 GSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLM 239

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ... Length = 254

 Score = 76.5 bits (189), Expect = 7e-17
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
           IVGG+V    + PW  LL+      CG TLIN ++V++AAHC  +
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDK 45

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score =  180 bits (459), Expect = 1e-56
 Identities = 50/114 (43%), Positives = 66/114 (57%), Gaps = 2/114 (1%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
           + K   VTGWG  + GG+ +  L + E+ +++   C+      +ITP M+C G+  G  D
Sbjct: 127 AGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCEN-LLPQQITPRMMCVGFLSGGVD 185

Query: 205 SCQGDSGGPLHYANET-VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           SCQGDSGGPL            GVVSWG+GCAQ N PGVY R+  +  WIK NT
Sbjct: 186 SCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} PDB: 3bn9_B* 3nps_A 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Length = 241

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVH 130
           +VGG      ++PW   L    +   CGA+LI+  ++++AAHC  
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYI 45

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Length = 224

 Score =  178 bits (455), Expect = 2e-56
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 4/113 (3%)

Query: 145 SNKTGIVTGWGVQKQGGSTS-DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
           +  +  V GWG   +GGS++   LL+V VPI+S A C+     + IT  M CAG   G K
Sbjct: 114 AGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGK 173

Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           DSCQGDSGGP+  ++ T+   +G VSWG GCA+ NY GVYA V    ++I   
Sbjct: 174 DSCQGDSGGPIVDSSNTL---IGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score =  178 bits (454), Expect = 5e-56
 Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEK 203
                 VTG+G  K  G + + L + +V ++    C +  AY + ITP MLCAG  +G+ 
Sbjct: 116 PGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDAITPRMLCAGSLEGKT 175

Query: 204 DSCQGDSGGPLHYANET-VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           D+CQGDSGGPL  ++   + ++ G+VSWG+ CA+ N PGVY RV     WI + T
Sbjct: 176 DACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKT 230

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Length = 232

 Score = 73.4 bits (181), Expect = 8e-16
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           IVGG      ++PW A L +     CGATLIN  ++++AAHC  
Sbjct: 1   IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFT 44

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score =  177 bits (451), Expect = 2e-55
 Identities = 45/121 (37%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 141 GKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYP 199
              +  +    +GWG    GG      L  V + I +NA C      + I  +M+CA   
Sbjct: 116 ANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVYTSDTIYDDMICATDN 175

Query: 200 KGE--KDSCQGDSGGPLHYANET-VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
            G   +DSCQGDSGGPL   + + +  +VG+VSWG GCA   YPGVY+RV  +  WI + 
Sbjct: 176 TGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCAS-GYPGVYSRVGFHAGWITDT 234

Query: 257 T 257
            
Sbjct: 235 I 235

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Length = 238

 Score = 71.9 bits (177), Expect = 4e-15
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 2/46 (4%)

Query: 87  IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVH 130
           IVGG     +++PW   +  K     +CG ++IN+ +V+ AAHC+ 
Sbjct: 1   IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQ 46

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score =  177 bits (450), Expect = 3e-55
 Identities = 42/117 (35%), Positives = 71/117 (60%), Gaps = 5/117 (4%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYPKGE 202
                IV+GWG ++      +TL+E+E+PI+ ++ C+K     + ++T +M+CAG  +G 
Sbjct: 132 EGAMVIVSGWG-KQFLQRFPETLMEIEIPIVDHSTCQKAYAPLKKKVTRDMICAGEKEGG 190

Query: 203 KDSCQGDSGGPLHYANET--VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           KD+C GDSGGP+   N      ++VG VSWG+ C +++  GVY+ ++    WI+  T
Sbjct: 191 KDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHHNKDWIQRVT 247

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} PDB: 4djz_B Length = 251

 Score = 70.4 bits (173), Expect = 1e-14
 Identities = 16/46 (34%), Positives = 29/46 (63%), Gaps = 1/46 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ 131
           I  G+       PW+A+L +   + +CG +L+ + +++TAAHC+HQ
Sbjct: 1   IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQ 46

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score =  176 bits (449), Expect = 5e-55
 Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 6/119 (5%)

Query: 144 FSNKTGIVTGWGVQKQGGSTS-----DTLLEVEVPILSNAECKKTAYENRITPNMLCAGY 198
            + +  +VTGWG        +       L  +++P++ + EC +    N ++ NMLCAG 
Sbjct: 121 QAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECSE-VMSNMVSENMLCAGI 179

Query: 199 PKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
               +D+C+GDSGGP+  +      +VG+VSWGEGC   +  GVY +V+RYL WI  + 
Sbjct: 180 LGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHI 238

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H* Length = 250

 Score = 70.8 bits (174), Expect = 1e-14
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 87  IVGGQVTYVHQYPWMA-LLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTI 139
           ++ G++T     PW   LL  KK+  CGA LI+  +VLTAAHC+ +   + V +
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRL 54

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score =  183 bits (467), Expect = 3e-54
 Identities = 52/107 (48%), Positives = 71/107 (66%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           VTGWG +K      +TL + ++P+++N EC+K    ++IT  M+CAGY +G KD+C+GDS
Sbjct: 516 VTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDS 575

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL   +  V H+VG+ SWGEGCAQ   PGVY  V  Y+ WI   T
Sbjct: 576 GGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKT 622

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A Length = 625

 Score = 76.4 bits (188), Expect = 5e-16
 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)

Query: 54  TNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK---KRF 110
           +  +       +    L  C          K RIVGG  +   ++PW   L      +R 
Sbjct: 355 SPTKILHGRGGISGYTLRLCKMDNECTTKIKPRIVGGTASVRGEWPWQVTLHTTSPTQRH 414

Query: 111 YCGATLINNLYVLTAAHCVH 130
            CG ++I N ++LTAAHC +
Sbjct: 415 LCGGSIIGNQWILTAAHCFY 434

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score =  174 bits (443), Expect = 3e-54
 Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 2/109 (1%)

Query: 151 VTGWGVQKQGGS-TSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQG 208
           + GWG   +  S  S +L E  VP++++ +C     Y   I+PNMLCAGY   + D+CQG
Sbjct: 130 IAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 189

Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL      V ++ G++SWG+GC + + PGVY RV  Y+ WI +  
Sbjct: 190 DSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 238

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Length = 248

 Score = 66.9 bits (164), Expect = 2e-13
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           I+GG  +    +PW+A + Y    +C  +L++  +V++AAHC  
Sbjct: 1   IIGGSSSLPGSHPWLAAI-YIGDSFCAGSLVHTCWVVSAAHCFS 43

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score =  174 bits (443), Expect = 3e-54
 Identities = 44/109 (40%), Positives = 68/109 (62%), Gaps = 2/109 (1%)

Query: 151 VTGWGVQKQGGS-TSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQG 208
           +TG+G +        + L    V ++S+ EC++   Y + +T  MLCA  P+ + DSCQG
Sbjct: 137 ITGFGKENSTDYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQG 196

Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL  + +    + G+VSWG GCA ++ PGVY RV+ +L WI+++T
Sbjct: 197 DSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPWIRSHT 245

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Length = 247

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKR-----FYCGATLINNLYVLTAAHCVH 130
           I+GG+ T +   PW A +  + R     + CG +LI+  +V++A HC  
Sbjct: 1   IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFI 49

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score =  174 bits (444), Expect = 7e-54
 Identities = 46/109 (42%), Positives = 66/109 (60%), Gaps = 2/109 (1%)

Query: 151 VTGWGVQKQGGS-TSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQG 208
           + GWG   +  S  S +L E  VP++++ +C     Y   I+PNMLCAGY   + D+CQG
Sbjct: 165 IAGWGHLDENVSGYSSSLREALVPLVADHKCSSPEVYGADISPNMLCAGYFDCKSDACQG 224

Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL      V ++ G++SWG+GC + + PGVY RV  Y+ WI +  
Sbjct: 225 DSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRI 273

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Length = 283

 Score = 78.9 bits (195), Expect = 1e-17
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)

Query: 60  TPPEPVKPVDLEKCGPCTCGAVNKK-----TRIVGGQVTYVHQYPWMALLMYKKRFYCGA 114
           +P       +    G   CG  +KK      RI+GG  +    +PW+A + Y    +C  
Sbjct: 4   SPDLLATLPEPASPGRQACGRRHKKRTFLRPRIIGGSSSLPGSHPWLAAI-YIGDSFCAG 62

Query: 115 TLINNLYVLTAAHCVH 130
           +L++  +V++AAHC  
Sbjct: 63  SLVHTCWVVSAAHCFS 78

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score =  172 bits (439), Expect = 1e-53
 Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT---AYENRITPNMLCAGYPKG 201
           +  T +++GWG      +  D L +  +P+++ A+C           I  N +C   P G
Sbjct: 123 AGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVGVGGANIWDNHICVQDPAG 182

Query: 202 EKDSCQGDSGGPLHYANETVHHIVGVVSW----GEGCAQENYPGVYARVNRYLTWIKNNT 257
              +C GDSGGPL+  +     +VGV SW    G G    +YP VY RV+ YL WI +N+
Sbjct: 183 NTGACNGDSGGPLNCPDGG-TRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGDNS 241

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2 Length = 241

 Score = 68.0 bits (167), Expect = 7e-14
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)

Query: 87  IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVH 130
           ++GG      ++PW      +       CGA+L+++   L+A+HCV 
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVD 47

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score =  172 bits (438), Expect = 2e-53
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-----TAYENRITPNMLCAGYP 199
           ++  G  +GWG   Q G  +  L+ V++PI+ + +C             +T NMLCAG  
Sbjct: 120 TDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE 178

Query: 200 KGEKDSCQGDSGGPLHYANET--VHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNN 256
            G KDSC+GDSGG L + +       + G+VSWG   C +    GVY +V  Y+ WI+N 
Sbjct: 179 SGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENI 238

Query: 257 T 257
            
Sbjct: 239 I 239

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} Length = 242

 Score = 71.5 bits (176), Expect = 4e-15
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
           I GGQ      +PW  L++          L+ + +VLTAAH V++
Sbjct: 1   IYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYE 43

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score =  173 bits (440), Expect = 2e-52
 Identities = 50/118 (42%), Positives = 62/118 (52%), Gaps = 5/118 (4%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEK 203
             K   VTGWG  +  G  +  L E  VPI+SN  C     Y N+I P M CAGYP+G  
Sbjct: 242 DGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGI 301

Query: 204 DSCQGDSGGPLHYANETVH----HIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           D+CQGDSGGP    +         + G+VSWG GCA    PGVY +V+ +  WI    
Sbjct: 302 DACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQAI 359

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A* Length = 372

 Score = 79.4 bits (196), Expect = 2e-17
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 76  CTCGA-VNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             CG       RIVGG+ T + ++PW   L Y     CG +L++  +VLTAAHC  
Sbjct: 106 QDCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFP 161

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score =  169 bits (431), Expect = 2e-52
 Identities = 43/115 (37%), Positives = 63/115 (54%), Gaps = 8/115 (6%)

Query: 151 VTGWGVQKQGGS-TSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKG------E 202
           ++G+G  +      S+ L E  V +  ++ C         +T NMLCAG  +        
Sbjct: 136 LSGYGKHEALSPFYSERLKEAHVRLYPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANL 195

Query: 203 KDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
            D+CQGDSGGPL   N+    +VG++SWG GC Q++ PGVY +V  YL WI++N 
Sbjct: 196 HDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVTNYLDWIRDNM 250

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A* Length = 252

 Score = 65.8 bits (161), Expect = 6e-13
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)

Query: 87  IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVH 130
           I GG    +  +PW A +  K      +RF CG  LI++ ++L+AAHC  
Sbjct: 1   IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQ 50

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score =  170 bits (432), Expect = 3e-52
 Identities = 43/119 (36%), Positives = 62/119 (52%), Gaps = 5/119 (4%)

Query: 142 KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYP 199
           +    +   V GWG + + G  S    ++ VP++   +C KT  A   R+  + LCAG  
Sbjct: 160 EVQVGQRLTVVGWG-RTETGQYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGE 218

Query: 200 KGEKDSCQGDSGGPLHYANET-VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           K  KDSC GDSGGPL          + G+VS+G  C  E +PG+Y +V +Y  WI+ N 
Sbjct: 219 KA-KDSCGGDSGGPLLAERANQQFFLEGLVSFGATCGTEGWPGIYTKVGKYRDWIEGNI 276

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia} Length = 278

 Score = 96.6 bits (241), Expect = 4e-24
 Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 75  PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCV 129
           P  CG   +  +I+ G  T   ++PW A++ YK      +F CG +LINN Y++TAAHCV
Sbjct: 11  PNDCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCV 70

Query: 130 H 130
            
Sbjct: 71  A 71

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} Length = 228

 Score =  167 bits (425), Expect = 1e-51
 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 7/113 (6%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
           +    +V+G+G  +        L   ++ ++   EC+       ++  + CA        
Sbjct: 120 TGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYGPIFLSLQVFCAQK--VGVS 177

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
              GD+G P    +     +VGV ++      E  P V+ +V  Y++WI++  
Sbjct: 178 LESGDAGDPTVQQDT----LVGVAAYFPKRP-EGAPEVFTKVGSYVSWIQDII 225

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score =  167 bits (425), Expect = 1e-51
 Identities = 49/110 (44%), Positives = 67/110 (60%), Gaps = 6/110 (5%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG      + S+ L  + +PILS ++C   +Y   IT  M CAGY +G KDSCQGDS
Sbjct: 118 VSGWGNTMSSTADSNKLQCLNIPILSYSDCNN-SYPGMITNAMFCAGYLEGGKDSCQGDS 176

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA 260
           GGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+  +T+ +
Sbjct: 177 GGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWLT-STMAS 221

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Length = 222

 Score = 66.4 bits (163), Expect = 2e-13
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           IVGG     +  P    L      +CG +L+N  +V++AAHC 
Sbjct: 1   IVGGYECKAYSQPHQVSL-NSGYHFCGGSLVNENWVVSAAHCY 42

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score =  167 bits (425), Expect = 2e-51
 Identities = 45/124 (36%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 145 SNKTGIVTGWG------VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGY 198
           +   G VTGWG          G      L  V +PI+    CK  +   RIT NM CAGY
Sbjct: 132 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKD-STRIRITDNMFCAGY 190

Query: 199 PKGE---KDSCQGDSGGPLHYANET--VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
              E    D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI
Sbjct: 191 KPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 250

Query: 254 KNNT 257
           +   
Sbjct: 251 QKVI 254

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ... Length = 259

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)

Query: 87  IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVHQ 131
           IV G    +   PW  +L  K  +   CGA+LI++ +VLTAAHC+  
Sbjct: 1   IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLY 47

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score =  166 bits (423), Expect = 8e-51
 Identities = 45/124 (36%), Positives = 58/124 (46%), Gaps = 12/124 (9%)

Query: 145 SNKTGIVTGWG------VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGY 198
           +   G VTGWG          G      L  V +PI+    CK  +   RIT NM CAGY
Sbjct: 162 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKD-STRIRITDNMFCAGY 220

Query: 199 PKGE---KDSCQGDSGGPLHYANET--VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
              E    D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI
Sbjct: 221 KPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 280

Query: 254 KNNT 257
           +   
Sbjct: 281 QKVI 284

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ... Length = 289

 Score = 84.0 bits (208), Expect = 3e-19
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 69  DLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAA 126
            LE              RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAA
Sbjct: 13  SLEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAA 72

Query: 127 HCVHQ 131
           HC+  
Sbjct: 73  HCLLY 77

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score =  164 bits (418), Expect = 1e-50
 Identities = 51/117 (43%), Positives = 71/117 (60%), Gaps = 10/117 (8%)

Query: 146 NKTGIVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
               +++GWG     G+   D L  ++ P+LS A+C+  +Y  +IT NM C G+ +G KD
Sbjct: 117 GTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEA-SYPGKITSNMFCVGFLEGGKD 175

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK----NNT 257
           SCQGDSGGP+         + GVVSWG+GCAQ+N PGVY +V  Y+ WIK     N+
Sbjct: 176 SCQGDSGGPVV----CNGQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAANS 228

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2 Length = 228

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 87  IVGGQVTYVHQYPWMALLM-YKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           IVGG      + PW ALL+  +   +CG T+++  Y+LTAAHC++Q     V
Sbjct: 1   IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKV 52

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Length = 235

 Score =  164 bits (418), Expect = 1e-50
 Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 10/116 (8%)

Query: 145 SNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKK----TAYENRITPNMLCAGYP 199
            + + +V+GWG         S  L+E    ++    C++       +  I   + CAG  
Sbjct: 116 PDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIEADKYIYDGVFCAGGE 175

Query: 200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
             E     GD+G P          +VGV S+        +P V+ RV  Y+  IK+
Sbjct: 176 YDETYIGYGDAGDPAVQNGT----LVGVASYISSMPS-EFPSVFLRVGYYVLDIKD 226

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score =  165 bits (420), Expect = 3e-50
 Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 4/111 (3%)

Query: 151 VTGWGVQKQGGS-TSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQG 208
           V GWG  ++    TS  L E  V ++    C  T  Y  RI    +CAGYP+G+ D+CQG
Sbjct: 138 VAGWGFLQENARRTSPMLQEARVDLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQG 197

Query: 209 DSGGPLHYANETVH--HIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSGGPL   +   +   +VG+ SWG GCA+   PGVY     YL WI +  
Sbjct: 198 DSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSYLNWIASKI 248

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A* Length = 290

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)

Query: 87  IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVH 130
           I+GGQ      +PWM  L         +   CG +L+N+ ++LTAAHC  
Sbjct: 1   IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFR 50

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score =  163 bits (415), Expect = 4e-50
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGD 209
           V GWG      +    L    + I+ N +C +    +  +  + +CAG  K     C+GD
Sbjct: 120 VYGWG-YTGLINYDGLLRVAHLYIMGNEKCSQHHRGKVTLNESEICAGAEKIGSGPCEGD 178

Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            GGPL      +  ++GV+  G GCA  N PG++ RV  Y  WI  
Sbjct: 179 YGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHK 224

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Length = 240

 Score = 59.6 bits (145), Expect = 7e-11
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           +V G  T      WM  L Y+ +  CG +LI   +VLTA  C  
Sbjct: 1   VVNGIPT-RTNIGWMVSLRYRNKHICGGSLIKESWVLTARQCFP 43

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score =  167 bits (425), Expect = 8e-50
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 9/121 (7%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-----TAYENRITPNMLCAGYP 199
           ++  G  +GWG   Q G  +  L+ V++PI+ + +C             +T NMLCAG  
Sbjct: 281 TDDIGTASGWG-LTQRGFLARNLMYVDIPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLE 339

Query: 200 KGEKDSCQGDSGGPLHYANET--VHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNN 256
            G KDSC+GDSGG L + +       + G+VSWG   C +    GVY +V  Y+ WI+N 
Sbjct: 340 SGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIENI 399

Query: 257 T 257
            
Sbjct: 400 I 400

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A Length = 403

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 4/58 (6%)

Query: 76  CTCG--AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
             CG  A     +I GGQ      +PW  L++          L+ + +VLTAAH V++
Sbjct: 149 PVCGLSARTTGGQIYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYE 204

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score =  163 bits (414), Expect = 8e-50
 Identities = 46/106 (43%), Positives = 65/106 (61%), Gaps = 2/106 (1%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGD 209
           +TGWG + QG   +  L E ++P++ N  C +      R+    LCAG+  G  DSCQGD
Sbjct: 138 ITGWG-ETQGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 196

Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           +GGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+ 
Sbjct: 197 AGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEG 242

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Length = 247

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 73  CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVHQ 131
           CG           R+VGG V + H +PW   L  +    +CG TLI+  +VLTAAHC+ +
Sbjct: 4   CGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score =  162 bits (412), Expect = 1e-49
 Identities = 34/109 (31%), Positives = 55/109 (50%), Gaps = 4/109 (3%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGD 209
           + GWG+  QGG  S  L E+++ +L    C  +  +   ++P+M+C      ++  C+GD
Sbjct: 122 MAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGSLSPSMVCLAADSKDQAPCKGD 181

Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNT 257
           SGGPL      V  + GV+S+    C     P V   V  Y++WI+  T
Sbjct: 182 SGGPLVCGKGRV--LAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVT 228

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A Length = 240

 Score = 71.1 bits (175), Expect = 6e-15
 Identities = 19/50 (38%), Positives = 27/50 (54%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIW 136
           I+GG+    H  P+MA L       CG  L++  +VLTAAHC+ Q +   
Sbjct: 1   IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQL 50

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score =  162 bits (412), Expect = 1e-49
 Identities = 28/105 (26%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           + GWG  K  G+    L    + ++SN EC    +  R+  + +C         +C+GD 
Sbjct: 121 IAGWGETKGTGN-DTVLNVALLNVISNQECNI-KHRGRVRESEMCTEGLLAPVGACEGDY 178

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGPL         + G++     CA+  +P V+ RV+ ++ WI  
Sbjct: 179 GGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHK 223

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Length = 234

 Score = 53.8 bits (130), Expect = 7e-09
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 87  IVGGQVTYVHQYPWMA-LLMYKKRFYCGATLINNLYVLTAAHCVH 130
           +VGG        PW   L   + + +CG +L+   ++LTA  C  
Sbjct: 1   VVGGHP---GNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFS 42

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2 Length = 222

 Score =  160 bits (408), Expect = 3e-49
 Identities = 36/117 (30%), Positives = 62/117 (52%), Gaps = 8/117 (6%)

Query: 141 GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPK 200
            +   +    +TGWG  + GG+T + L E+E+ +    +C++   + R+  + +C    +
Sbjct: 112 DEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCER--DQWRVIDSHICTLTKR 169

Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           G + +C GDSGGPL          +G+VS+G  CA    P VY RV+ +++WI  N 
Sbjct: 170 G-EGACHGDSGGPLVANGA----QIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANL 220

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score =  160 bits (407), Expect = 5e-49
 Identities = 55/106 (51%), Positives = 71/106 (66%), Gaps = 6/106 (5%)

Query: 151 VTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           ++GWG  K  G S  D L  ++ PILS++ CK  AY  +IT NM CAGY +G KDSCQGD
Sbjct: 118 ISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKS-AYPGQITSNMFCAGYLEGGKDSCQGD 176

Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           SGGP+   +     + G+VSWG GCAQ+N PGVY +V  Y++WIK 
Sbjct: 177 SGGPVV-CSGK---LQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQ 218

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Length = 223

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           IVGG     +  P+   L      +CG +LIN+ +V++AAHC   G+ + +
Sbjct: 1   IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRL 50

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score =  163 bits (414), Expect = 4e-48
 Identities = 44/127 (34%), Positives = 64/127 (50%), Gaps = 10/127 (7%)

Query: 138 TIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAG 197
            ++ K+    T  VTGWG  +  GS+SD LL+  VP+   + C + AY   +  + LC G
Sbjct: 249 ELKEKAEQISTYFVTGWGTTE-NGSSSDVLLQANVPLQPRSACSQ-AYRRAVPLSQLCVG 306

Query: 198 YPKGEKDSCQGDSGGPLHYANETVH------HIVGVVSWG-EGCAQENYPGVYARVNRYL 250
                +DSC+GDSGGPL    + +          G+VS G   C Q + PG+Y  V  Y+
Sbjct: 307 GGDL-QDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQGVVTCGQISLPGLYTNVGEYV 365

Query: 251 TWIKNNT 257
            WI +  
Sbjct: 366 QWITDTM 372

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster} Length = 408

 Score = 98.8 bits (246), Expect = 4e-24
 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 56  QEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFY 111
              +      K + L K     CG      R+  G    +   PWMALL Y++    RF 
Sbjct: 89  CPSANIQHNSKVMSLFKDENFDCGNFLS-QRVSNGYEVKLSSRPWMALLRYQQFGESRFL 147

Query: 112 CGATLINNLYVLTAAHCVHQGLGIWVTIR 140
           CG  +I+  Y+LTAAHCVH        IR
Sbjct: 148 CGGAMISERYILTAAHCVHGLQNDLYEIR 176

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score =  158 bits (403), Expect = 4e-48
 Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 4/107 (3%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
            TGWG  +    +T D L +  +P+LSN  CKK  +  +I   M+CAG       SC GD
Sbjct: 138 TTGWGLTRYTNANTPDRLQQASLPLLSNTNCKK-YWGTKIKDAMICAG--ASGVSSCMGD 194

Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           SGGPL         +VG+VSWG      + PGVYARV   + W++  
Sbjct: 195 SGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 241

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Length = 245

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 73  CG-PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRF-YCGATLINNLYVLTAAHCVH 130
           CG P     ++  +RIV G+      +PW   L  K  F +CG +LIN  +V+TAAHC  
Sbjct: 1   CGVPAIQPVLSGLSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV 60

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score =  163 bits (414), Expect = 4e-48
 Identities = 45/124 (36%), Positives = 59/124 (47%), Gaps = 12/124 (9%)

Query: 145 SNKTGIVTGWGVQKQ------GGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGY 198
           +   G VTGWG  K+      G      L  V +PI+    CK  +   RIT NM CAGY
Sbjct: 297 AGYKGRVTGWGNLKETWTANVGKGQPSVLQVVNLPIVERPVCKD-STRIRITDNMFCAGY 355

Query: 199 PK---GEKDSCQGDSGGPLHYANET--VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
                   D+C+GDSGGP    +      + +G+VSWGEGC ++   G Y  V R   WI
Sbjct: 356 KPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFYTHVFRLKKWI 415

Query: 254 KNNT 257
           +   
Sbjct: 416 QKVI 419

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens} Length = 424

 Score = 81.4 bits (201), Expect = 6e-18
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 70  LEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAH 127
           LE              RIV G    +   PW  +L  K  +   CGA+LI++ +VLTAAH
Sbjct: 149 LEDKTERELLESYIDGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAH 208

Query: 128 CVHQ 131
           C+  
Sbjct: 209 CLLY 212

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score =  158 bits (401), Expect = 5e-48
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT----AYENRITPNMLCAGYPK 200
               G V+G+GV ++  +    L  V +P+ +   C+         +  + NM CAG+P 
Sbjct: 124 LGLMGYVSGFGVMEEKIA--HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 181

Query: 201 GEKDSCQGDSGGPL--HYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
            ++D+CQGDSGG       N       G+VSWG GC++    G Y +V  Y+ WIK   
Sbjct: 182 LKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 238

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2 Length = 242

 Score = 66.5 bits (163), Expect = 3e-13
 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
           I+GGQ   +  +PW            G  L+ + ++LTAAH ++ 
Sbjct: 1   IIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYP 43

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score =  158 bits (401), Expect = 6e-48
 Identities = 47/111 (42%), Positives = 60/111 (54%), Gaps = 9/111 (8%)

Query: 151 VTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAY---ENRITPNMLCAGYPKGEKDSC 206
           VTGWG         SDTL EV V +LS   C   +Y   +  IT +M+CAG  KG+KDSC
Sbjct: 127 VTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSC 186

Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARV-NRYLTWIKNN 256
           +GD+GGPL            +VS G  C     PG+Y  +  +Y TWIK+N
Sbjct: 187 KGDAGGPLICKGV----FHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A Length = 240

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 19/45 (42%), Positives = 26/45 (57%)

Query: 86  RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
            I+GG+    H  P+MA + Y     CG  LI+  +VLTAAHC +
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQY 46

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score =  162 bits (411), Expect = 6e-48
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 12/129 (9%)

Query: 140 RGKSFSNKTGIVTGWGVQKQG--GSTSDTLLEVEVPILSNAECK------KTAYENRITP 191
           + + F +     +GWG ++ G     S+ L ++++P +   +C+      +   +  +  
Sbjct: 255 QSQIFDSTECFASGWGKKEFGSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQ 314

Query: 192 NMLCAGYPKGEKDSCQGDSGGPLHY---ANETVHHIVGVVSWGEGCAQENYPGVYARVNR 248
             +CAG  +G KD+C GD G PL      N + +  +G+V+WG GC  EN PGVYA V  
Sbjct: 315 TFVCAGGEQG-KDTCTGDGGSPLFCPDPRNPSRYMQMGIVAWGIGCGDENVPGVYANVAH 373

Query: 249 YLTWIKNNT 257
           +  WI    
Sbjct: 374 FRNWIDQEM 382

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia} Length = 394

 Score = 81.8 bits (202), Expect = 4e-18
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 12/88 (13%)

Query: 55  NQEESTPPEPVKPVDLEKCGPCTCGAVNKK---TRIVGGQ-VTYVHQYPWMALLMYK--- 107
            +    P     P  +    P  CG  N++    +I G        ++PWM  ++     
Sbjct: 95  PEGGVLPTPSPTPPVVPVLKPSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVI 154

Query: 108 -----KRFYCGATLINNLYVLTAAHCVH 130
                ++  CG +LI    VLT AHCV+
Sbjct: 155 PGSGEEQLVCGGSLIAPSVVLTGAHCVN 182

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score =  158 bits (401), Expect = 7e-48
 Identities = 38/108 (35%), Positives = 59/108 (54%), Gaps = 4/108 (3%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGD 209
           +TGWG+ +  G  + TL +  +P +  A C  +  + + +  +M+CAG   G +  CQGD
Sbjct: 129 ITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGG-DGVRSGCQGD 187

Query: 210 SGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKN 255
           SGGPLH      + + GV S+    GC     P V+ RV+ Y++WI N
Sbjct: 188 SGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINN 235

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ... Length = 240

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 130
           +VGG     + +P    L Y+        CG TLI   +V+TAAHCV 
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVD 48

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score =  158 bits (401), Expect = 8e-48
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 4/110 (3%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           VTGWG     G  +  L +   P++  A C ++  +   +   M+CAG   G   +C GD
Sbjct: 141 VTGWGRLYTNGPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGG-DGVISACNGD 199

Query: 210 SGGPLHYANETVHHIVGVVSWGEG--CAQENYPGVYARVNRYLTWIKNNT 257
           SGGPL+   +    + G+VS+G G  C     P V+ RV+ Y+ WI    
Sbjct: 200 SGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL 249

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2 Length = 251

 Score = 65.3 bits (160), Expect = 8e-13
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 78  CG----AVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 129
           CG      N   R+VGG+    H +PW   L Y +    R  CG TLI   +VLTAAHC+
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60

Query: 130 H 130
            
Sbjct: 61  S 61

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score =  157 bits (400), Expect = 1e-47
 Identities = 45/114 (39%), Positives = 64/114 (56%), Gaps = 9/114 (7%)

Query: 151 VTGWGVQKQGGS--TSDTLLEVEVPILSNAECKK-------TAYENRITPNMLCAGYPKG 201
           VTGWG      S  T   L ++EVP++S   C             + +  +M+CAGY +G
Sbjct: 126 VTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSLYNIDAKPEEPHFVQEDMVCAGYVEG 185

Query: 202 EKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            KD+CQGDSGGPL    E + ++ G+VSWG+ C   N PGVY   + Y +WI++
Sbjct: 186 GKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQS 239

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Length = 261

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 16/44 (36%), Positives = 24/44 (54%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           I GG      Q+PW   + Y+    CG +L++  +VL+AAHC  
Sbjct: 1   ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFP 44

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score =  156 bits (397), Expect = 2e-47
 Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 8/109 (7%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKT--AYENRITPNMLCAGYPKGEKDSCQ 207
           + GWG +    G+  D    V + +L    C+     +E   T   LCAG  +G KD+C+
Sbjct: 122 IMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFELPATSRTLCAGILEGGKDTCK 181

Query: 208 GDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           GDSGGPL    +      G+ SWG+  CAQ + P  Y +V  +L WI+N
Sbjct: 182 GDSGGPLICNGQ----FQGIASWGDDPCAQPHKPAAYTKVFDHLDWIEN 226

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Length = 238

 Score = 68.4 bits (168), Expect = 5e-14
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           I+GG    ++++ ++  L   +    +CG TLIN  +VLTAAHC  +   I +
Sbjct: 1   IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRKNFRIKL 53

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ... Length = 97

 Score =  151 bits (385), Expect = 2e-47
 Identities = 38/96 (39%), Positives = 51/96 (53%), Gaps = 3/96 (3%)

Query: 161 GSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANET 220
            +T D L +  +P+LSN  CKK  +  +I   M+CAG       SC GDSGGPL      
Sbjct: 1   ANTPDRLQQASLPLLSNTNCKK-YWGTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNG 57

Query: 221 VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
              +VG+VSWG      + PGVYARV   + W++  
Sbjct: 58  AWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQT 93

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score =  155 bits (395), Expect = 3e-47
 Identities = 49/110 (44%), Positives = 60/110 (54%), Gaps = 11/110 (10%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           + GWG     G   DT+    + ++S  EC+  AY  +IT NMLCAG  K  KDSCQGDS
Sbjct: 119 ILGWGKT-ADGDFPDTIQCAYIHLVSREECEH-AYPGQITQNMLCAGDEKYGKDSCQGDS 176

Query: 211 GGPLHYANETV--HHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNT 257
           GGPL      V   H+ G+VSWG   C  +  PGVY  V RY  WI+   
Sbjct: 177 GGPL------VCGDHLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTI 220

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Length = 223

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 17/43 (39%), Positives = 22/43 (51%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           +V G       +P+ A L       CG  LI+ L+VLTAAHC 
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCK 43

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score =  163 bits (415), Expect = 3e-47
 Identities = 46/114 (40%), Positives = 60/114 (52%), Gaps = 4/114 (3%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
            N T IV+GWG +K       +L   EV ++SN  C K          M CAG   G  D
Sbjct: 445 PNDTCIVSGWGREKDNER-VFSLQWGEVKLISN--CSKFYGNRFYEKEMECAGTYDGSID 501

Query: 205 SCQGDSGGPLHYANET-VHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           +C+GDSGGPL   +   V ++ GVVSWGE C +  +PGVY +V  Y  WI  + 
Sbjct: 502 ACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKVANYFDWISYHV 555

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 73.8 bits (181), Expect = 4e-15
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 75  PCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
             +CG       ++ RIVGG+   +   PW   +       CG   I   ++LTAAHC+ 
Sbjct: 306 KLSCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLR 365

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score =  155 bits (395), Expect = 4e-47
 Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 12/116 (10%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           + GWG +     +  D      + IL  A C+  AY   +    LCAG  +G KD+C+GD
Sbjct: 119 IMGWGTITSPNATLPDVPHCANINILDYAVCQA-AY-KGLAATTLCAGILEGGKDTCKGD 176

Query: 210 SGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIK----NNTIDA 260
           SGGPL    +      G++S G   CAQ   PG+Y +V  Y  WI+     NT   
Sbjct: 177 SGGPLICNGQ----FQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISGNTDAT 228

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Length = 231

 Score = 70.3 bits (173), Expect = 1e-14
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           ++GG    ++++ ++AL+ Y     CG TLIN  +VLTA HC  
Sbjct: 1   VIGGDECNINEHRFLALV-YANGSLCGGTLINQEWVLTARHCDR 43

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score =  155 bits (395), Expect = 4e-47
 Identities = 45/107 (42%), Positives = 61/107 (57%), Gaps = 7/107 (6%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
            +GWG ++ +  S  D L  V++ IL N ECKK A+  ++T  MLC G+ +G KD+C GD
Sbjct: 131 ASGWGSIEPENFSFPDDLQCVDLKILPNDECKK-AHVQKVTDFMLCVGHLEGGKDTCVGD 189

Query: 210 SGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKN 255
           SGGPL         + GV SWG   C   N P V  RV  Y+ WI++
Sbjct: 190 SGGPLMCDGV----LQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIED 232

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Length = 238

 Score = 71.9 bits (177), Expect = 3e-15
 Identities = 20/43 (46%), Positives = 25/43 (58%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           IVGG     H  PW A L +   F CG  L++  +VLTAAHC+
Sbjct: 1   IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCI 43

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score =  154 bits (393), Expect = 5e-47
 Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 7/108 (6%)

Query: 151 VTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           V+GWG       T    L+ V+V ++S  +C K  Y++ +  +MLCAG P  +K++C GD
Sbjct: 117 VSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTK-VYKDLLENSMLCAGIPDSKKNACNGD 175

Query: 210 SGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNN 256
           SGGPL         + G+VSWG   C Q N PGVY +V ++  WI + 
Sbjct: 176 SGGPLVCRGT----LQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDT 219

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Length = 224

 Score = 69.9 bits (172), Expect = 1e-14
 Identities = 16/43 (37%), Positives = 23/43 (53%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           I+ G       +PW   L+   + +CG  L+N  +VLTAAHC 
Sbjct: 1   IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCK 43

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score =  155 bits (394), Expect = 5e-47
 Identities = 36/106 (33%), Positives = 53/106 (50%), Gaps = 7/106 (6%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG       ++D L EV++ + S  +C    ++N I    +CAG P   K+S  GDS
Sbjct: 124 VAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIA-RFKNYIPFTQICAGDPSKRKNSFSGDS 182

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           GGPL           G+VS+G        P VY R++ +L+WI + 
Sbjct: 183 GGPLVCNGV----AQGIVSYGRNDG--TTPDVYTRISSFLSWIHST 222

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2 Length = 227

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 87  IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCV 129
           I+GG     H  P+MA L++K   K   CG  L+   +VLTAAHC+
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCL 46

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B Length = 152

 Score =  152 bits (387), Expect = 5e-47
 Identities = 40/109 (36%), Positives = 57/109 (52%), Gaps = 9/109 (8%)

Query: 151 VTGWGVQKQGGST---SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQ 207
            +GWG  + G       D +  V++ +L N  C   A+ +++T +MLCAGY  G KD+C 
Sbjct: 43  ASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCAD-AHPDKVTESMLCAGYLPGGKDTCM 101

Query: 208 GDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           GDSGGPL           G+ SWG   C   N P +Y ++  YL WI +
Sbjct: 102 GDSGGPLICNGM----WQGITSWGHTPCGSANKPSIYTKLIFYLDWIDD 146

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score =  155 bits (393), Expect = 8e-47
 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 5/111 (4%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGD 209
           VTGWG  +  G++ D L + ++ ++  A C K   + + +  NM+CAG   G   SC GD
Sbjct: 129 VTGWGRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGG-DGIISSCNGD 187

Query: 210 SGGPLHYANET-VHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNT 257
           SGGPL+         + G+VS+G   GC   + P V+ RV+ Y+ WI +  
Sbjct: 188 SGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVI 238

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Length = 241

 Score = 59.5 bits (145), Expect = 8e-11
 Identities = 19/48 (39%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 130
           +VGG+    + +PW   L Y      R  CG TL++  +VLTAAHC+ 
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCIS 48

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score =  154 bits (392), Expect = 8e-47
 Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG     G  S TL EV++ +  + +C+        +   LC G P+ +K S +GDS
Sbjct: 124 VAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELCVGDPEIKKTSFKGDS 183

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           GGPL           G+VS+G        P    +V+ ++ WIK  
Sbjct: 184 GGPLVCNKV----AQGIVSYGRNNGM--PPRACTKVSSFVHWIKKT 223

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A Length = 227

 Score = 62.5 bits (153), Expect = 6e-12
 Identities = 21/46 (45%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 87  IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCV 129
           I+GG     H  P+MA LM    K    CG  LI + +VLTAAHC 
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCW 46

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score =  155 bits (393), Expect = 8e-47
 Identities = 37/108 (34%), Positives = 55/108 (50%), Gaps = 7/108 (6%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
            +GWG          D L  V + +L N +C K A+E ++T  MLCAG   G   +C+ D
Sbjct: 133 ASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDK-AHEMKVTDAMLCAGEMDGGSYTCEHD 191

Query: 210 SGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
           SGGPL         + G+ SWG E C +   P VY ++ ++ +WI+  
Sbjct: 192 SGGPLICDGI----LQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET 235

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2 Length = 240

 Score = 73.8 bits (182), Expect = 6e-16
 Identities = 16/53 (30%), Positives = 26/53 (49%)

Query: 85  TRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
              V  QV   +  PW   +    ++ CG  L++  +VLTAAHC +    +W+
Sbjct: 2   APPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWL 54

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score =  154 bits (392), Expect = 1e-46
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGD 209
           +TGWG    GG  SD+L +  +P + +A C  +  + + +   M+CAG   G    C GD
Sbjct: 129 ITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKTTMVCAG--GGANSGCNGD 186

Query: 210 SGGPLHYANETVHHIVGVVSW--GEGCAQENYPGVYARVNRYLTWIKN 255
           SGGPL+      +++ GV S+    GC     P V+ RV+ Y++W+  
Sbjct: 187 SGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNG 234

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Length = 236

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 130
           +VGG+V   + +PW   L YK        CG +LI   +V+TAAHCV 
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVD 48

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score =  153 bits (390), Expect = 2e-46
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 6/106 (5%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           + GWG +    +  D      + I+ +  C+            LCAG  KG +D+C GDS
Sbjct: 122 IMGWG-KISTTTYPDVPHCTNIFIVKHKWCEPLYPWVPADSRTLCAGILKGGRDTCHGDS 180

Query: 211 GGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKN 255
           GGPL    E    + G+V+ G E C Q   P VY +V  Y  WI++
Sbjct: 181 GGPLICNGE----MHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQS 222

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Length = 234

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           +VGG    ++++P++  L        +C   LIN  +VLTAAHC  + + I +
Sbjct: 1   VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRNIRIKL 53

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score =  155 bits (394), Expect = 2e-46
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
               G+++GW   + G    ++L    V ++   EC +      +T    C         
Sbjct: 170 PRTRGLLSGWA--RNGTDLGNSLTTRPVTLVEGEECGQ-VLNVTVTTRTYCER---SSVA 223

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           +     G  +   +     + GV+        + +  +  +V+RY  W K   
Sbjct: 224 AMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 275

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Length = 283

 Score = 68.2 bits (167), Expect = 1e-13
 Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 69  DLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAH 127
           D ++C P               +   +   PW   L   + + +CG  +I   +VLT A 
Sbjct: 37  DHKQCVPHDQC--ACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAK 94

Query: 128 CVHQGLGIWV 137
           C      I V
Sbjct: 95  CSLLHRNITV 104

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score =  153 bits (390), Expect = 2e-46
 Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 7/107 (6%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
            +GWG +        D L  V + +L N  C K  Y  ++T  MLCAG   G KD+C+ D
Sbjct: 130 ASGWGSITPTRWQKPDDLQCVFITLLPNENCAK-VYLQKVTDVMLCAGEMGGGKDTCRDD 188

Query: 210 SGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKN 255
           SGGPL         + G  S+G   C +   P +Y  + ++ +WIK+
Sbjct: 189 SGGPLICDGI----LQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKD 231

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Length = 237

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           +VGG     +  PW   + Y+K   CG  L++  +VLTAAHC 
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCY 43

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score =  153 bits (390), Expect = 2e-46
 Identities = 32/106 (30%), Positives = 49/106 (46%), Gaps = 6/106 (5%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG     G    TL EV++ +  +  C+     +    N +C G  K +  S + DS
Sbjct: 125 VAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQSSYNRANEICVGDSKIKGASFEEDS 184

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           GGPL           G+VS+G+     + P V+ RV  +++WIK  
Sbjct: 185 GGPLVCKRA----AAGIVSYGQTDG--SAPQVFTRVLSFVSWIKKT 224

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} PDB: 3g01_A Length = 227

 Score = 60.2 bits (147), Expect = 3e-11
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 4/47 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 129
           I+GG     H  P+MA   + K    + +CG  L+ + +VLTAAHC 
Sbjct: 1   IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCK 47

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score =  156 bits (396), Expect = 3e-46
 Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 10/119 (8%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT----AYENRITPNMLCAGYPK 200
               G V+G+G        +  L  V +P+ +   C+         +  + NM CAG+P 
Sbjct: 213 LGLMGYVSGFG--VMEEKIAHDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 270

Query: 201 GEKDSCQGDSGGPL--HYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
            ++D+CQGDSGG       N       G+VSWG GC++    G Y +V  Y+ WIK   
Sbjct: 271 LKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 327

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A* Length = 329

 Score = 73.6 bits (181), Expect = 2e-15
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)

Query: 69  DLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 124
            + +C P  CG     V ++ RI+GGQ   +  +PW        R   G  L+ + ++LT
Sbjct: 69  KIPRCLPV-CGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGDRWILT 125

Query: 125 AAHCVHQ 131
           AAH ++ 
Sbjct: 126 AAHTLYP 132

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score =  153 bits (388), Expect = 3e-46
 Identities = 36/109 (33%), Positives = 49/109 (44%), Gaps = 9/109 (8%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
             GWG       TS TL EVE+ I+    C    Y        +C G P   + +  GDS
Sbjct: 125 AAGWGKTGVRDPTSYTLREVELRIMDEKACVD--YRYYEYKFQVCVGSPTTLRAAFMGDS 182

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID 259
           GGPL  A        G+VS+G   A+   P ++ RV+ Y+ WI    I+
Sbjct: 183 GGPLLCAGV----AHGIVSYGHPDAK--PPAIFTRVSTYVPWIN-AVIN 224

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Length = 224

 Score = 61.0 bits (149), Expect = 2e-11
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 4/47 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 129
           I+GG  +  H  P+MA L        R  CG  LI+  +VLTAAHC 
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCK 47

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score =  153 bits (388), Expect = 5e-46
 Identities = 37/107 (34%), Positives = 52/107 (48%), Gaps = 6/107 (5%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           + GWG +     +  D      + +L +A C+    E       LCAG  +G KD+C GD
Sbjct: 120 IMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTEYRTLCAGILEGGKDTCGGD 179

Query: 210 SGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKN 255
           SGGPL    +      G+VS+G   C Q   PGVY +V  Y  WI++
Sbjct: 180 SGGPLICNGQ----FQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQS 222

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 1bqy_A* Length = 234

 Score = 72.2 bits (178), Expect = 2e-15
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           ++GG    ++++  +        F+C  TLIN  +VLTAAHC 
Sbjct: 1   VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCD 43

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score =  152 bits (387), Expect = 6e-46
 Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 6/109 (5%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGD 209
           ++GWG    GG   D L +  +P +    C +   +   +   M+CAG     +  C GD
Sbjct: 129 ISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGG--DTRSGCNGD 186

Query: 210 SGGPLHYANET-VHHIVGVVSW--GEGCAQENYPGVYARVNRYLTWIKN 255
           SGGPL+         + GV S+    GC     P V+ RV+ ++ WI  
Sbjct: 187 SGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDE 235

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C Length = 240

 Score = 51.1 bits (123), Expect = 7e-08
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 4/45 (8%)

Query: 90  GQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVH 130
           G+    + + W   L Y+K       CG +LI   +V+TA HC+ 
Sbjct: 2   GEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCIS 46

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score =  152 bits (386), Expect = 8e-46
 Identities = 42/111 (37%), Positives = 52/111 (46%), Gaps = 10/111 (9%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKK---TAYENRITPNMLCAGYPKGEKDSCQ 207
           V GWG      S SDTL EVE+ I+    C       +   I  NM+CAG  +G +DSC 
Sbjct: 122 VAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGGRDSCN 181

Query: 208 GDSGGPLHYANETVHHIVGVVSWG--EGCAQENYPGVYARV-NRYLTWIKN 255
           GDSG PL           GV S+G    C     PGVY  +  ++L WI  
Sbjct: 182 GDSGSPLLCEGV----FRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIM 228

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A Length = 234

 Score = 67.2 bits (165), Expect = 1e-13
 Identities = 18/43 (41%), Positives = 23/43 (53%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           I+GG     H  P+M LL   ++  C   LI   +VLTAAHC 
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCN 43

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score =  152 bits (386), Expect = 8e-46
 Identities = 41/108 (37%), Positives = 57/108 (52%), Gaps = 8/108 (7%)

Query: 151 VTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           V+GWG  K         L  + + +LS   C+  AY  +I   M CAG   G +DSCQGD
Sbjct: 121 VSGWGTTKSPQVHFPKVLQCLNISVLSQKRCED-AYPRQIDDTMFCAGDKAG-RDSCQGD 178

Query: 210 SGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNN 256
           SGGP+         + G+VSWG+  CA+ N PGVY  + ++  WI+  
Sbjct: 179 SGGPVVCNGS----LQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQET 222

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Length = 227

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 87  IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           I+ G    +H  PW A L+ +  + YCGA L++  ++LTAAHC  +   + +
Sbjct: 1   IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVFRVRL 52

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score =  152 bits (386), Expect = 9e-46
 Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 7/107 (6%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
            +GWG         S  L  V + +LSN +C +  Y++ +T  MLCAG  +G KD+C GD
Sbjct: 128 ASGWGSTNPSEMVVSHDLQCVNIHLLSNEKCIE-TYKDNVTDVMLCAGEMEGGKDTCAGD 186

Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           SGGPL         + G+ S G   CA+   P +YA++ ++ +WIK 
Sbjct: 187 SGGPLICDGV----LQGITSGGATPCAKPKTPAIYAKLIKFTSWIKK 229

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Length = 235

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           IVGG     +  PW   ++    + CG  LI+  +V+TAAHC      + +
Sbjct: 1   IVGGYKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCYSNNYQVLL 49

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score =  151 bits (384), Expect = 1e-45
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 7/107 (6%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V+GWG+    G     L  V V ++S   C K  Y+    P+M CAG  + +KDSC GDS
Sbjct: 120 VSGWGLL-ANGRMPTVLQCVNVSVVSEEVCSK-LYDPLYHPSMFCAGGGQDQKDSCNGDS 177

Query: 211 GGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNN 256
           GGPL         + G+VS+G+  C Q   PGVY  + ++  WI+  
Sbjct: 178 GGPLICNGY----LQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKT 220

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A* Length = 223

 Score = 69.1 bits (170), Expect = 2e-14
 Identities = 15/43 (34%), Positives = 24/43 (55%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           I+ G+    H  PW A L+ +   +C   L++  +VL+AAHC 
Sbjct: 1   IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCF 43

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score =  154 bits (390), Expect = 2e-45
 Identities = 18/113 (15%), Positives = 38/113 (33%), Gaps = 7/113 (6%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
               G+++GW   + G    ++L    V ++   EC +      +T    C         
Sbjct: 211 PRTRGLLSGWA--RNGTDLGNSLTTRPVTLVEGEECGQ-VLNVTVTTRTYCER---SSVA 264

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           +     G  +   +     + GV+        + +  +  +V+RY  W K   
Sbjct: 265 AMHWMDGSVVTREHRGSWFLTGVLGSQ-PVGGQAHMVLVTKVSRYSLWFKQIM 316

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317

 Score = 66.3 bits (162), Expect = 6e-13
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 1/61 (1%)

Query: 72  KCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVH 130
                              +   +   PW   L   + + +CG  +I   +VLT A C  
Sbjct: 79  HKQCVPHDQCACGVLTSEKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSL 138

Query: 131 Q 131
            
Sbjct: 139 L 139

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score =  151 bits (384), Expect = 2e-45
 Identities = 39/107 (36%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKK-TAYENRITPNMLCAGYPKGEKDSCQGD 209
           V GWG+    G   D+L  V +P+L  A C + T ++  IT  ++CA      +DSC+GD
Sbjct: 125 VAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAE--SNRRDSCKGD 182

Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKN 255
           +GGPL         + GVV+ G   C     PG+Y RV  Y  WI +
Sbjct: 183 AGGPLVCGGV----LEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A Length = 228

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           I+GG+    H  P+MA +       CG  L+   +VL+AAHC+
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCL 43

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score =  151 bits (384), Expect = 2e-45
 Identities = 40/109 (36%), Positives = 58/109 (53%), Gaps = 11/109 (10%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
            +GWG ++ +   T   L  V++ ++SN  C +  +  ++T  MLCAG   G K +C GD
Sbjct: 130 ASGWGSIEPEEFLTPKKLQCVDLHVISNDVCAQ-VHPQKVTKFMLCAGRWTGGKSTCSGD 188

Query: 210 SGGPLHYANETV--HHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKN 255
           SGGPL      V    + G+ SWG E CA    P +Y +V  Y  WIK+
Sbjct: 189 SGGPL------VCNGVLQGITSWGSEPCALPERPSLYTKVVHYRKWIKD 231

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P* Length = 237

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           IVGG     H  PW  L+  + R  CG  L++  +VLTAAHC+ 
Sbjct: 1   IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIR 44

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score =  151 bits (384), Expect = 2e-45
 Identities = 36/108 (33%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
            +GWG +       S TL  VE+ + SN +C + AY  ++T  +LCA +       C GD
Sbjct: 130 TSGWGLISTFTNRGSGTLQCVELRLQSNEKCAR-AYPEKMTEFVLCATHRDDSGSICLGD 188

Query: 210 SGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
           SGG L           G+ SWG   CA  N   V+ +V  +  WIK  
Sbjct: 189 SGGALICDGV----FQGITSWGYSECADFNDNFVFTKVMPHKKWIKET 232

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2 Length = 237

 Score = 68.4 bits (168), Expect = 6e-14
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           I+GG     H  PW   + ++  F CG  L++  +VLTAAHC+
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCM 43

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score =  150 bits (382), Expect = 3e-45
 Identities = 35/105 (33%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG        SDTL EV++ ++    C    + +      LC G P+  K + +GDS
Sbjct: 125 VAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH--FRDFDHNLQLCVGNPRKTKSAFKGDS 182

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           GGPL  A        G+VS+G   A    P V+ R++ Y  WI  
Sbjct: 183 GGPLLCAGV----AQGIVSYGRSDA--KPPAVFTRISHYRPWINQ 221

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Length = 226

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAAHCV 129
           I+GG     H  P+MA L          +CG  LI   +VLTAAHC 
Sbjct: 1   IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCA 47

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score =  150 bits (381), Expect = 4e-45
 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG +      +DTL EV++ +  + +C +  + +      +C G  +  K + +GDS
Sbjct: 124 VAGWG-RVSMRRGTDTLREVQLRVQRDRQCLR-IFGSYDPRRQICVGDRRERKAAFKGDS 181

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           GGPL   N       G+VS+G+       P V+ RV+ +L WI+  
Sbjct: 182 GGPLLCNNV----AHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTT 221

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A* Length = 224

 Score = 61.8 bits (151), Expect = 9e-12
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 87  IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCV 129
           I+GG+ +  H  P+MA L  +    +  CG  L+   +VLTAAHC 
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCW 46

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score =  154 bits (392), Expect = 5e-45
 Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 10/119 (8%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT----AYENRITPNMLCAGYPK 200
               G V+G+GV ++  +    L  V +P+ +   C+         +  + NM CAG+P 
Sbjct: 281 LGLMGYVSGFGVMEEKIA--HDLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPS 338

Query: 201 GEKDSCQGDSGGPL--HYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
            ++D+CQGDSGG       N       G+VSWG GC++    G Y +V  Y+ WIK   
Sbjct: 339 LKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSRG--YGFYTKVLNYVDWIKKEM 395

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 Length = 399

 Score = 72.9 bits (179), Expect = 4e-15
 Identities = 20/72 (27%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 64  PVKPVDLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINN 119
             K   + +C P  CG     V ++ +I+GGQ   +  +PW        R   G  L+ +
Sbjct: 132 EQKGEKIPRCLPV-CGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIHGR--GGGALLGD 188

Query: 120 LYVLTAAHCVHQ 131
            ++LTAAH ++ 
Sbjct: 189 RWILTAAHTLYP 200

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score =  149 bits (380), Expect = 6e-45
 Identities = 47/111 (42%), Positives = 63/111 (56%), Gaps = 9/111 (8%)

Query: 151 VTGWG-VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD 209
           ++GWG V     +  +TL   EV I S  +C++ AY  +IT  M+CAG   G  D+CQGD
Sbjct: 122 ISGWGTVTSPQENFPNTLNCAEVKIYSQNKCER-AYPGKITEGMVCAGSSNG-ADTCQGD 179

Query: 210 SGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNTID 259
           SGGPL         + G+ SWG   C +   PGVY ++ RY TWIK  T+D
Sbjct: 180 SGGPLVCDGM----LQGITSWGSDPCGKPEKPGVYTKICRYTTWIK-KTMD 225

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2 Length = 225

 Score = 70.6 bits (174), Expect = 7e-15
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHC 128
           I+ G+    H  PW A L   +R  CG  L+ + +VLTAAHC
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHC 42

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score =  152 bits (385), Expect = 1e-44
 Identities = 40/124 (32%), Positives = 58/124 (46%), Gaps = 16/124 (12%)

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT--------AYENRITPNMLCA 196
               G+++GWG + +    +  L    +P+    +CK+         A     TPNM+CA
Sbjct: 206 DGDLGLISGWG-RTEKRDRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICA 264

Query: 197 GYPKGEKDSCQGDSGGPLH---YANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
           G  KG  DSC+GDSGG        ++T  +  G+VSWG  C      G+Y RV  Y+ WI
Sbjct: 265 GGEKG-MDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---YGLYTRVKNYVDWI 320

Query: 254 KNNT 257
               
Sbjct: 321 MKTM 324

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 Length = 333

 Score = 78.3 bits (193), Expect = 5e-17
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 8/67 (11%)

Query: 69  DLEKCGPCTCG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 124
           +L KC P  CG       +K RI+GG    +  +PW          + G  LIN  +VLT
Sbjct: 62  ELPKCVPV-CGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLT 117

Query: 125 AAHCVHQ 131
           AAH V  
Sbjct: 118 AAHVVEG 124

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score =  148 bits (375), Expect = 3e-44
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 9/120 (7%)

Query: 140 RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYP 199
               F N    V+GWG   Q  + +  L      ++ N  C +      I  + +C    
Sbjct: 114 LNNKFENIWATVSGWG---QSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTS 170

Query: 200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWG--EGCAQENYPGVYARVNRYLTWIKNNT 257
            G K  C GDSGGP   +++ +   +GVVS+    GC     P  ++RV  Y+ WI+ NT
Sbjct: 171 DG-KSPCFGDSGGPFVLSDKNLL--IGVVSFVSGAGCES-GKPVGFSRVTSYMDWIQQNT 226

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A Length = 230

 Score = 69.1 bits (170), Expect = 3e-14
 Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 4/48 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVH 130
           I+ G   Y   +P+ A L       +R +CG +LI+N ++LTAAHCVH
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVH 48

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score =  148 bits (376), Expect = 4e-44
 Identities = 50/115 (43%), Positives = 58/115 (50%), Gaps = 12/115 (10%)

Query: 151 VTGWGVQKQGGSTSD--TLLEVEVPILSNAECKK--------TAYENRITPNMLCAGYPK 200
           VTGWG             L +V+VPI+ N  C                I  +MLCAG   
Sbjct: 127 VTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIIRDDMLCAGN-- 184

Query: 201 GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            ++DSCQGDSGGPL           GVVSWGEGCAQ N PG+Y RV  YL WI +
Sbjct: 185 SQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHH 239

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A* Length = 245

 Score = 60.3 bits (147), Expect = 4e-11
 Identities = 21/47 (44%), Positives = 29/47 (61%), Gaps = 3/47 (6%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFY---CGATLINNLYVLTAAHCVH 130
           IVGGQ     ++PW   L  + R++   CG +LI+  +VLTAAHCV 
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVG 47

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score =  146 bits (371), Expect = 1e-43
 Identities = 40/116 (34%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 144 FSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
                   TGWG+        SD L +V+VPI+SNA+C    Y   +T   +C     G 
Sbjct: 114 GVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDA-VY-GIVTDGNICIDSTGG- 170

Query: 203 KDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNT 257
           K +C GDSGGPL+Y         G+ S+G     +  YP  + RV  +L WI+  T
Sbjct: 171 KGTCNGDSGGPLNYNGL----TYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Length = 226

 Score = 75.6 bits (187), Expect = 1e-16
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           IVGG     + +P  A L     ++CG +LI+  ++LTAAHC+     + V
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDV 51

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score =  143 bits (362), Expect = 2e-42
 Identities = 30/105 (28%), Positives = 38/105 (36%), Gaps = 14/105 (13%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
           V GWG Q+ GG  S     V V +    +C+         PN +C G        C GD 
Sbjct: 125 VAGWGSQRSGGRLSRFPRFVNVTVTPEDQCR---------PNNVCTGVLTRRGGICNGDG 175

Query: 211 GGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
           G PL           GV S+  G      P  + RV  +  WI  
Sbjct: 176 GTPLVCEGL----AHGVASFSLGPCG-RGPDFFTRVALFRDWIDG 215

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Length = 225

 Score = 67.9 bits (167), Expect = 6e-14
 Identities = 18/54 (33%), Positives = 29/54 (53%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIR 140
           IVGG+     Q+P++A +  + R +CG  LI+  +V+TAA C         T+ 
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVV 54

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score =  141 bits (359), Expect = 6e-42
 Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 15/106 (14%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
             GWG+  +    +  L E+ V ++++  C++         + +C      +   C GDS
Sbjct: 124 AMGWGLLGRNRGIASVLQELNVTVVTS-LCRR---------SNVCTLVRGRQAGVCFGDS 173

Query: 211 GGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKN 255
           G PL         I G+ S+   GCA   YP  +A V +++ WI +
Sbjct: 174 GSPLVCNGL----IHGIASFVRGGCASGLYPDAFAPVAQFVNWIDS 215

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Length = 218

 Score = 71.0 bits (175), Expect = 5e-15
 Identities = 20/44 (45%), Positives = 28/44 (63%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHCV 
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVA 44

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score =  140 bits (356), Expect = 2e-41
 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 15/107 (14%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
             GWG        +  L E+ V +++              P+ +C   P+ +   C GDS
Sbjct: 127 AMGWGRVGAHDPPAQVLQELNVTVVTFF----------CRPHNICTFVPRRKAGICFGDS 176

Query: 211 GGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
           GGPL         I G+ S+   GCA   +P  + RV  Y+ WI++ 
Sbjct: 177 GGPLICDGI----IQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Length = 221

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKR---FYCGATLINNLYVLTAAHCVH--QGLGIWVT 138
           IVGG     H  P+MA L  +      +CG TLI+  +VLTAAHC+       + V 
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVV 57

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score =  148 bits (375), Expect = 5e-41
 Identities = 47/107 (43%), Positives = 64/107 (59%), Gaps = 2/107 (1%)

Query: 151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGD 209
           +TGWG   QG   +  L E ++P++ N  C +      R+    LCAG+  G  DSCQGD
Sbjct: 682 ITGWGET-QGTFGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGD 740

Query: 210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           SGGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+  
Sbjct: 741 SGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGV 787

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Length = 791

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 64  PVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALL-MYKKRFYCGATLINNLYV 122
           P        CG           R+VGG V + H +PW   L       +CG TLI+  +V
Sbjct: 539 PQCAAPSFDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWV 598

Query: 123 LTAAHCVH 130
           LTAAHC+ 
Sbjct: 599 LTAAHCLE 606

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score =  137 bits (346), Expect = 9e-38
 Identities = 32/151 (21%), Positives = 50/151 (33%), Gaps = 38/151 (25%)

Query: 145 SNKTGIVTGWGVQKQG------------GSTSDTLLEVEVPILSNAEC------------ 180
           + +    T    QK+                   L   EV I +  +             
Sbjct: 339 ALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPG 398

Query: 181 --KKTAYENRITPNMLCAGY--PKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG--EGC 234
             K       +TP  LC G   P  + ++C+GDSGGPL     +    VGV+SWG  + C
Sbjct: 399 YDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVC 458

Query: 235 AQEN--------YPGVYARVNRYLTWIKNNT 257
             +             +  + + L W+K   
Sbjct: 459 KNQKRQKQVPAHARDFHINLFQVLPWLKEKL 489

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A Length = 497

 Score = 69.2 bits (169), Expect = 1e-13
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 9/68 (13%)

Query: 71  EKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAA 126
           E      CG           + T  H+ PW A +      K    C   +++  +VLTAA
Sbjct: 204 ESQSLSLCG-----MVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAA 258

Query: 127 HCVHQGLG 134
           HC      
Sbjct: 259 HCFTVDDK 266

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score =  125 bits (314), Expect = 8e-33
 Identities = 29/140 (20%), Positives = 45/140 (32%), Gaps = 33/140 (23%)

Query: 151 VTGWGVQKQGGST-------SDTLLEVEVPILSNAEC--------------KKTAYENRI 189
                +                 L   EV I +  +               K       +
Sbjct: 592 QQKEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVV 651

Query: 190 TPNMLCAGY--PKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG--EGCAQEN------- 238
           TP  LC G   P  + ++C+GDSGGPL     +    VGV+SWG  + C  +        
Sbjct: 652 TPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPA 711

Query: 239 -YPGVYARVNRYLTWIKNNT 257
                +  + + L W+K   
Sbjct: 712 HARDFHINLFQVLPWLKEKL 731

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F* Length = 741

 Score = 56.6 bits (136), Expect = 2e-09
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 76  CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 131
             CG           + T  H+ PW A +   +       C   +++  +VLTAAHC   
Sbjct: 451 SLCG-----MVWEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTV 505

Query: 132 GLG 134
              
Sbjct: 506 DDK 508

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score =  123 bits (311), Expect = 1e-32
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 37/149 (24%)

Query: 145 SNKTGIVTGWGVQKQGGSTSD--TLLEVEVPI-----LSNAECKK------------TAY 185
              T       +  +    +    L   ++ I     +    C +            T  
Sbjct: 353 QGSTCRDHENELLNKQSVPAHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDV 412

Query: 186 ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-----EGCAQEN-- 238
              +T   LC+G  +  +  C+G+SGG +          VG+VSWG      G A +N  
Sbjct: 413 REVVTDQFLCSGTQED-ESPCKGESGGAVFLERRFRFFQVGLVSWGLYNPCLGSADKNSR 471

Query: 239 ----------YPGVYARVNRYLTWIKNNT 257
                         +  + R   W++ + 
Sbjct: 472 KRAPRSKVPPPRDFHINLFRMQPWLRQHL 500

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A* Length = 509

 Score = 78.5 bits (193), Expect = 8e-17
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 52  FVTNQEESTPPEPVKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFY 111
           F+    ++        +D+ K     CG        +    +   + PW   +  K +  
Sbjct: 194 FILQDTKALHQVFEHMLDVSKLTDTICG-----VGNMSANASDQERTPWHVTIKPKSQET 248

Query: 112 CGATLINNLYVLTAAHCVHQ 131
           C   LI++ +VLTAAHC   
Sbjct: 249 CRGALISDQWVLTAAHCFRD 268

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A Length = 80

 Score = 67.9 bits (167), Expect = 3e-15
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCV 129
           I+GG+    + +PW   + +   F CG  L+N  +VLTAAHC 
Sbjct: 1   IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCK 43

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ... Length = 131

 Score = 61.0 bits (149), Expect = 3e-12
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCV 129
           IV G+      +PW   L  K    +CG +LIN  +V+TAAHC 
Sbjct: 1   IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCG 44

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Length = 215

 Score = 58.8 bits (142), Expect = 1e-10
 Identities = 34/218 (15%), Positives = 65/218 (29%), Gaps = 54/218 (24%)

Query: 87  IVGG-----QVTYVHQYPWMALL-MYKKRFYCGATLINNLYVLTAAHCVH---QGLGIWV 137
           +V G     +V      P+ ++  +      C  TLI    +LT  HCV+          
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60

Query: 138 TIRGKSFSNKTGIVTGWGVQK---------QGGSTSD-TLLEVEVPILSNAECKKTAYEN 187
                  ++ T +     + +          G S  D  +++ +  I +    +      
Sbjct: 61  GSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVT 120

Query: 188 RITP-NMLCAGYPKGEK---------------------------DSCQGDSGGPLHYANE 219
            +T   +  +GYP  +                            D+  G+SG  +   N 
Sbjct: 121 NLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYYTIDTFSGNSGSAMLDQN- 179

Query: 220 TVHHIVGVVSWGEGCAQENYPGVYARVN-RYLTWIKNN 256
               IVGV + G      N      +    ++ +I   
Sbjct: 180 --QQIVGVHNAGYSNGTING---GPKATAAFVEFINYA 212

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Length = 218

 Score = 47.4 bits (112), Expect = 9e-07
 Identities = 29/184 (15%), Positives = 42/184 (22%), Gaps = 48/184 (26%)

Query: 108 KRFYCGATLINNLY---VLTAAHCVHQGL-GIWVTI-------RGKSFSNKTGIVTGWGV 156
             F C A ++ +     V TA HC+H G  G +                +          
Sbjct: 19  GDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEELVT 78

Query: 157 QKQGGSTSDTLLEVEVPILSNAECKK----------TAYENRITPNMLCAGYPKGEKDSC 206
             +  +  D   +    +L                  A+           GYP     + 
Sbjct: 79  SAEWANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNG 138

Query: 207 Q---------------------------GDSGGPLHYANETVHHIVGVVSWGEGCAQENY 239
           Q                           G SGGP    N T        S+G        
Sbjct: 139 QELHSCHGTATNDPMGSSTQGIPCNMTGGSSGGPWFLGNGTGGAQNSTNSYGYTFLPNVM 198

Query: 240 PGVY 243
            G Y
Sbjct: 199 FGPY 202

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	260
2vnt_A	276	Urokinase-type plasminogen activator; UPA, inhibit	100.0
4f4o_C	347	Haptoglobin; globin fold, serine protease fold, co	100.0
4dgj_A	235	Enteropeptidase catalytic light chain; serine prot	100.0
3bg8_A	238	Coagulation factor XIA light chain; protease inhib	100.0
2any_A	241	Kininogenin, plasma kallikrein, light chain, fletc	100.0
1ddj_A	247	Plasminogen; catalytic domain, blood clotting; 2.0	100.0
1t8o_A	245	Chymotrypsin A; chymotrypsin, serine proteinase, B	100.0
2oq5_A	232	Transmembrane protease, serine 11E; type II trans-	100.0
2olg_A	278	Pro-phenoloxidase activating enzyme-I; prophenolox	100.0
1z8g_A	372	Serine protease hepsin; serine protease hepsin, pr	100.0
2jde_A	276	Urokinase-type plasminogen activator; plasminogen	100.0
3gyl_B	261	Prostasin; ENAC, zymogen, divalent cation, channel	100.0
1ym0_A	238	Fibrinotic enzyme component B; two chains, glycosy	100.0
2wph_S	235	Coagulation factor IXA heavy chain; serine proteas	100.0
2bz6_H	254	Blood coagulation factor VIIA; serine protease, en	100.0
2f91_A	237	Hepatopancreas trypsin; trypsin, canonical inhibit	100.0
1yc0_A	283	Hepatocyte growth factor activator; hydrolase/inhi	100.0
3ncl_A	241	Suppressor of tumorigenicity 14 protein; proteinas	100.0
2bdy_A	289	Thrombin; thrombin, complex structure, hydrolase,	100.0
2jkh_A	241	Activated factor XA heavy chain; plasma, calcium,	100.0
1aut_C	250	Activated protein C; serine proteinase, plasma cal	100.0
1mza_A	240	Pro-granzyme K; apoptosis, serine protease, S1 fam	100.0
2f9n_A	245	Alpha I tryptase; serine proteinase, trypsin-like,	100.0
3mhw_U	247	Urokinase-type plasminogen activator; hydrolase, b	100.0
1pyt_D	251	TC, PCPA-TC, chymotrypsinogen C; ternary complex (	100.0
1fiw_A	290	Beta-acrosin heavy chain; anti-parallel beta-barre	100.0
3gov_B	251	MAsp-1; complement, serine protease, beta barrel,	100.0
3beu_A	224	Trypsin, SGT; beta sheets, serine protease, hydrol	100.0
2b9l_A	394	Prophenoloxidase activating factor; CLIP domain, e	100.0
2zgc_A	240	Granzyme M; serine protease, cytolysis, glycoprote	100.0
2r0l_A	248	Hepatocyte growth factor activator; serine proteas	100.0
2bdg_A	223	Kallikrein-4; serine proteinase, S1 subsite, 70-80	100.0
3tvj_B	242	Mannan-binding lectin serine protease 2 B chain; i	100.0
2asu_B	234	Hepatocyte growth factor-like protein; serine prot	100.0
1gvk_B	240	Elastase 1, peptide inhibitor; hydrolase, serine p	100.0
1si5_H	240	Scatter factor, hepatocyte growth factor, SF, hepa	100.0
1spj_A	238	Kallikrein 1; serine protease, KLK1, HK1, hydrolas	100.0
1bru_P	241	Elastase, PPE; serine protease, hydrolase; HET: 1N	100.0
1lo6_A	223	Kallikrein 6, HK6; serine protease, human kallikre	100.0
1m9u_A	241	Earthworm fibrinolytic enzyme; hydrolase, serine p	100.0
1fxy_A	228	Coagulation factor XA-trypsin chimera; protease, c	100.0
1rtf_B	252	(TC)-T-PA, two chain tissue plasminogen activator;	100.0
1hj8_A	222	Trypsin I; hydrolase, radiation damage, disulphide	100.0
1eq9_A	222	Chymotrypsin; FIRE ANT, serine proteinase, hydrola	100.0
1pq7_A	224	Trypsin; ultra-high resolution, catalysis, hydrola	100.0
3s69_A	234	Thrombin-like enzyme defibrase; beta-barrel, serin	100.0
2zch_P	237	Prostate-specific antigen; human PSA, kallikrein r	100.0
3nxp_A	424	Prethrombin-1; allostery, blood coagulation, hydro	100.0
1ao5_A	237	Glandular kallikrein-13; serine protease, protein	100.0
3mfj_A	223	Cationic trypsin; serine proteinase, hydrolase; 0.	100.0
2psx_A	227	Kallikrein-5; zinc inhibition, stratum corneum, gl	100.0
3s9c_A	234	Vipera russelli proteinase RVV-V gamma; serine pro	100.0
4e7n_A	238	Snake-venom thrombin-like enzyme; beta-barrel, hyd	100.0
1orf_A	234	Granzyme A; hydrolase-hydrolase inhibitor complex;	100.0
3h7t_A	235	Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0	100.0
3rm2_H	259	Thrombin heavy chain; serine protease, kringle, hy	100.0
2xxl_A	408	GRAM-positive specific serine protease, isoform B;	100.0
4i8h_A	223	Cationic trypsin, beta-trypsin; serine protease, h	100.0
1npm_A	225	Neuropsin; serine proteinase, glycoprotein; HET: N	100.0
1iau_A	227	Granzyme B; hydrolase-hydrolase inhibitor complex;	100.0
1zjk_A	403	Mannan-binding lectin serine protease 2; beta barr	100.0
1elt_A	236	Elastase; serine proteinase; 1.61A {Salmo salar} S	100.0
2qxi_A	224	Kallikrein-7; S1 pocket, chloromethyl ketone, alte	100.0
3fzz_A	227	Granzyme C; hydrolase, cytolysis, protease, serine	100.0
1gvz_A	237	Kallikrein-1E2; antigen, prostate specific antigen	100.0
1md8_A	329	C1R complement serine protease; innate immunity, a	100.0
2f83_A	625	Coagulation factor XI; protease, apple domain, hyd	100.0
2aiq_A	231	Protein C activator; snake venom serine proteinase	100.0
2xw9_A	228	Complement factor D; immune system, hydrolase, ser	100.0
1sgf_A	240	7S NGF, nerve growth factor; growth factor (beta-N	100.0
1euf_A	227	Duodenase; serine protease, dual specificity, hydr	100.0
1ton_A	235	Tonin; hydrolase(serine proteinase); 1.80A {Rattus	100.0
4ag1_A	226	Chymase; hydrolase-de novo protein complex, inhibi	100.0
1elv_A	333	Complement C1S component; trypsin-like serin prote	100.0
2qy0_B	242	Complement C1R subcomponent; serine protease, beta	100.0
1fon_A	240	Procarboxypeptidase A-S6; truncated zymogen E, ser	100.0
4dur_A	791	Plasminogen, serine protease; fibrinolysis, hydrol	100.0
1azz_A	226	Collagenase; complex (serine protease/inhibitor),	100.0
3rp2_A	224	RAT MAST cell protease II; serine proteinase; 1.90	100.0
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	100.0
1cgh_A	224	Cathepsin G; inflammation, specificity, serine pro	100.0
1a7s_A	225	Heparin binding protein; serine protease homolog,	100.0
3h7o_A	228	Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8	100.0
1gpz_A	399	Complement C1R component; hydrolase, activation, i	100.0
2hlc_A	230	Collagenase; serine protease, hydrolase, collagen	100.0
2z7f_E	218	Leukocyte elastase; serine protease, serine protea	100.0
2xrc_A	565	Human complement factor I; immune system, hydrolas	100.0
3h5c_B	317	Vitamin K-dependent protein Z; protein Z-protein Z	100.0
1fuj_A	221	PR3, myeloblastin; hydrolase, serine protease, gly	100.0
1rrk_A	497	Complement factor B; BB, hydrolase; 2.00A {Homo sa	100.0
2odp_A	509	Complement C2; C3/C5 convertase, complement serin	100.0
3hrz_D	741	Complement factor B; serine protease, glycosilated	99.98
1p3c_A	215	Glutamyl-endopeptidase; serine protease, hydrolase	99.96
2pka_B	152	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.93
1yph_E	97	Chymotrypsin A, chain C; serine protease, hydrolas	99.92
1arb_A	268	Achromobacter protease I; hydrolase(serine proteas	99.91
3cp7_A	218	Alkaline serine protease Al20; trypsin-like, hydro	99.87
2vid_A	204	Serine protease SPLB; hydrolase; 1.80A {Staphyloco	99.87
2w7s_A	200	Serine protease SPLA; hydrolase, family S1; 1.80A	99.87
1wcz_A	268	Glutamyl endopeptidase; virulence factor, hydrolas	99.86
2o8l_A	274	V8 protease, taphylococcal serine; serine protease	99.85
1agj_A	242	Epidermolytic toxin A; hydrolase, serine protease;	99.79
1yph_C	131	Chymotrypsin A, chain B; serine protease, hydrolas	99.78
2qa9_E	185	Streptogrisin-B; chymotrypsin-type serine peptidas	99.76
2pka_A	80	Kallikrein A; serine proteinase; 2.05A {Sus scrofa	99.74
2as9_A	210	Serine protease; trypsin-like fold, hydrolase; 1.7	99.72
1qtf_A	246	Exfoliative toxin B; serine protease, superantigen	99.59
2sga_A	181	Proteinase A; hydrolase (serine proteinase); 1.50A	99.54
3k6y_A	237	Serine protease, possible membrane-associated seri	99.4
3tjo_A	231	Serine protease HTRA1; peptidase, hydrolase; HET:	99.32
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	99.24
1l1j_A	239	Heat shock protease HTRA; hydrolase, serine protei	99.22
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	99.2
3lgi_A	237	Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro	99.13
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	99.12
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	99.11
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	99.05
1hpg_A	187	Glutamic acid specific protease; serine protease,	98.92
3sti_A	245	Protease DEGQ; serine protease, PDZ domain, chaper	98.89
2ea3_A	189	Chymotrypsin; celloulomonas, protease, hydrolase;	98.89
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.51
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.14
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.14
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	97.57
2h5c_A	198	Alpha-lytic protease; serine protease, acylation t	97.35
1zyo_A	191	Serine protease; beta-barrel, glutamyl endopeptida	97.28
2pfe_A	186	Protease A, alkaline serine protease, TFPA; beta-b	97.21
2oua_A	188	Serine protease, protein NAPA; kinetic stability,	96.25
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.0
1wxr_A	1048	Haemoglobin protease; hemoglobine protease, autotr	92.71
3syj_A	1011	Adhesion and penetration protein autotransporter;	87.98
2w5e_A	163	Putative serine protease; coiled coil, transmembra	85.3
4ash_A	185	NS6 protease; hydrolase, trypsin-like, calicivirus	81.5

>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens}

Probab=100.00  E-value=8.4e-44  Score=310.31  Aligned_cols=185  Identities=33%  Similarity=0.696  Sum_probs=148.3

Q ss_pred             CCccCCCC--CCCceeCCeeCCCCCCceEEEEEecC-----eeeeeeEEEeCCEEEeccccccc----------------
Q psy8662          75 PCTCGAVN--KKTRIVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCVHQ----------------  131 (260)
Q Consensus        75 ~~~cg~~~--~~~ri~gG~~a~~~~~Pw~v~l~~~~-----~~~C~GtLIs~~~VLTAAhCv~~----------------  131 (260)
                      +..||...  ...||+||++|..++|||||+|+.+.     .|+|+||||+++||||||||+..                
T Consensus        10 ~~~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~v~~g~~~~   89 (276)
T 2vnt_A           10 KFQCGQKTLRPRFKIIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRL   89 (276)
T ss_dssp             CCCTTCCCC-----CCSSEECCGGGSTTEEEEEEECSSSCEEEEEEEEEEETTEEEECGGGTTTCCCGGGEEEEESCCBS
T ss_pred             CCCCCCcCCCCCCcEECCEECCCCCCCcEEEEEEecCCCcceeEEEEEEeeCCEEEECcccccCCCCCccEEEEeeeeec
Confidence            34677654  46799999999999999999998743     48999999999999999999853                


Q ss_pred             -------------------C---------CCcee----------------------eccC-cccCCceEEEEeeeecCCC
Q psy8662         132 -------------------G---------LGIWV----------------------TIRG-KSFSNKTGIVTGWGVQKQG  160 (260)
Q Consensus       132 -------------------~---------~~i~l----------------------~~~~-~~~~~~~~~v~Gwg~~~~~  160 (260)
                                         +         ++|.|                      +... ....+..+.++|||.+...
T Consensus        90 ~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~~Diall~L~~~~~~~~~~~~~v~picL~~~~~~~~~~~~~~~~g~G~~~~~  169 (276)
T 2vnt_A           90 NSNTQGEMKFEVENLILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENST  169 (276)
T ss_dssp             SSCCTTCEEEEEEEEEECTTCEECSSCEESCCEEEEEECTTSCCCCCCSSCCCCBCCCSSCCCCTTCEEEEEESCCSSTT
T ss_pred             cCCCCceEEEEEEEEEEccccccccccccchhhhhhhhccccccccCcccccccccccccccccccceEEEEEeeccccC
Confidence                               1         12222                      1111 1224678999999987654


Q ss_pred             C-CCCccceEEEEEeeChhhHhhhhcC-CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCC
Q psy8662         161 G-STSDTLLEVEVPILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQEN  238 (260)
Q Consensus       161 ~-~~~~~l~~~~v~vi~~~~C~~~~~~-~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~  238 (260)
                      + .....|+.+.+++++.++|+..+.. ......++|+....+..++|+|||||||++..+++|+|+||+|||.+|+..+
T Consensus       170 ~~~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~~  249 (276)
T 2vnt_A          170 DYLYPEQLKMTVVKLISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKD  249 (276)
T ss_dssp             CSCCCSBCEEEEEEEECHHHHTSTTTTGGGSCTTEEEEECTTSCCCCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTT
T ss_pred             CCCcchhheeeeeeEecHHHhhhhhccCcccCccceeeccCCCCCCCCCCCCCCeEEEeeCCeEEEEEEEEECCCCCCCC
Confidence            3 4467889999999999999886432 3467788998877777899999999999999999999999999999999888


Q ss_pred             CCcEEEechhhHHHHHHHhhc
Q psy8662         239 YPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       239 ~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .|+|||||++|++||+++|++
T Consensus       250 ~P~vyt~V~~y~~WI~~~~~~  270 (276)
T 2vnt_A          250 KPGVYTRVSHFLPWIRSHTKE  270 (276)
T ss_dssp             BCEEEEEGGGGHHHHHHHHSC
T ss_pred             CCEEEEEHHHHHHHHHHHhhh
Confidence            999999999999999999975

>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa}

Probab=100.00  E-value=4.7e-44  Score=322.84  Aligned_cols=181  Identities=27%  Similarity=0.540  Sum_probs=149.7

Q ss_pred             ccCCCC----CCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc---------------------
Q psy8662          77 TCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ---------------------  131 (260)
Q Consensus        77 ~cg~~~----~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~---------------------  131 (260)
                      .||+..    ...||+||.+|..++|||||+|+..+.++||||||+++||||||||+..                     
T Consensus        89 ~CG~p~~~~~~~~RIvGG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~~~~~~~~~  168 (347)
T 4f4o_C           89 VCGKPKNPVDQVQRIMGGSLDAKGSFPWQAKMISHHNLTSGATLINEQWLLTTAKNLRLGHKNDTKAKDIAPTLRLYVGK  168 (347)
T ss_dssp             CCSCCSSCC-----CCSCCBCCSCCCTTCEEEECTTCCEEECCBCSSSEEEECHHHHTTTSCTTCCHHHHGGGCEEEETT
T ss_pred             CCCCCCCCCCCCCeEECCEECCCCCCCcEEEEEeCCCEEEEEEEEcCCEEEeCcccccCCCCCcceEEeeeeeeeecCCC
Confidence            588643    4579999999999999999999999999999999999999999999853                     


Q ss_pred             ----------------CCCcee------------------eccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeCh
Q psy8662         132 ----------------GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSN  177 (260)
Q Consensus       132 ----------------~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~  177 (260)
                                      .+||.|                  |.......+..++++|||.+.. +..+..|+++.+++++.
T Consensus       169 ~~~~~V~~i~~HP~y~~nDIALlkL~~~v~~~~~v~PicLp~~~~~~~g~~~~v~GWG~~~~-~~~s~~L~~~~v~iv~~  247 (347)
T 4f4o_C          169 KQEVEIEKVIFHPDNSTVDIGLIKLKQKVPVNERVMPICLPSKDYVNVGLVGYVSGWGRNAN-LNFTEHLKYVMLPVADQ  247 (347)
T ss_dssp             TEEECEEEEEECSCTTTCCCEEEEESSCCCCSSSCCCCBCCSSCCCCTTCEEEEEECSBCTT-SSBCSSCEEEEEEEECH
T ss_pred             eEEEEEEEEEECcCCCCCCEEEEEECCCccCCCceeeeecCccccCCCCcEEEEeccccCCC-CCCCccceEEEEEEeCH
Confidence                            123333                  3333344678999999998764 34678899999999999


Q ss_pred             hhHhhhhcC----------------CCCCCCeEEeecCCCCCCCCcCCCCCceEEee--CCeeEEEEEEeeCCCCCCCCC
Q psy8662         178 AECKKTAYE----------------NRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENY  239 (260)
Q Consensus       178 ~~C~~~~~~----------------~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~~~~  239 (260)
                      ++|++.+..                ..++++||||+...+..++|+|||||||++..  +++|+|+||+|||.+|+. +.
T Consensus       248 ~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iCAG~~~~~~d~C~GDSGGPLv~~~~~~~~~~lvGIvS~G~~C~~-~~  326 (347)
T 4f4o_C          248 EKCVQYYEGSTVPEKKTPKSPVGVQPILNEHTFCAGLSKYQEDTCYGDAGSAFAVHDKDDDTWYAAGILSFDKSCRT-AE  326 (347)
T ss_dssp             HHHHHHHSSCSSGGGCCCCCSSSSCCCCSTTEEEECCCTTCCCCCTTCTTCEEEEEETTTTEEEEEEEEEECCCTTT-SS
T ss_pred             HHHHHHhccccccccccccccccccccccCCeEEecCCCCCCCCCCCCCCcceEEEeCCCCEEEEEEEEEeCCCCCC-CC
Confidence            999876432                24788999999877789999999999999864  589999999999999976 46


Q ss_pred             CcEEEechhhHHHHHHHhhc
Q psy8662         240 PGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       240 p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |+|||||++|++||+++|++
T Consensus       327 pgVYTrVs~y~~WI~~~i~~  346 (347)
T 4f4o_C          327 YGVYVRVTSILDWIQTTIAD  346 (347)
T ss_dssp             CEEEEEHHHHHHHHHHHHTC
T ss_pred             CeEEEEHHHHHHHHHHHHHc
Confidence            99999999999999999986

>4dgj_A Enteropeptidase catalytic light chain; serine protease, hydrolase; 1.90A {Homo sapiens} PDB: 1ekb_B

Probab=100.00  E-value=2.2e-43  Score=300.80  Aligned_cols=172  Identities=41%  Similarity=0.765  Sum_probs=148.8

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~~   80 (235)
T 4dgj_A            1 IVGGSDAKEGAWPWVVGLYYDDRLLCGASLVSSDWLVSAAHCVYGRNLEPSKWTAILGLHMKSNLTSPQTVPRLIDEIVI   80 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTSCSSGGGEEEEESCCBTTCCSCTTCEEEEEEEEEE
T ss_pred             CCCCccCCCCCCCcEEEEeeCCCeEEEEEEeeCCEEEECHHhcCCCCCCCccEEEEEeeecccccCCCceeEEeEEEEEE
Confidence            689999999999999999999999999999999999999999832                                   


Q ss_pred             ---------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhh
Q psy8662         132 ---------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT  183 (260)
Q Consensus       132 ---------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~  183 (260)
                               .+||.|                  |.... ...+..++++|||.+...+..+..|+++.+++++.++|+..
T Consensus        81 hp~y~~~~~~~DiALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~  160 (235)
T 4dgj_A           81 NPHYNRRRKDNDIAMMHLEFKVNYTDYIQPISLPEENQVFPPGRNCSIAGWGTVVYQGTTADILQEADVPLLSNERCQQQ  160 (235)
T ss_dssp             CTTCBTTTTBTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTCCBCSBCEEEEEEEECHHHHHHH
T ss_pred             CCCCCCCCCCCeEEEEEECCccccCCcccccCCCCcccCCCCCCEEEEEecccCCCCCccchhheEeEeeecCHHHhhhh
Confidence                     122322                  22221 12578899999998877667788899999999999999987


Q ss_pred             hcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         184 AYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       184 ~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      +....++++|||++...+..+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||+.|++||+++++
T Consensus       161 ~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~WI~~~i~  235 (235)
T 4dgj_A          161 MPEYNITENMICAGYEEGGIDSCQGDSGGPLMCQENNRWFLAGVTSFGYECALPNRPGVYARVSRFTEWIQSFLH  235 (235)
T ss_dssp             CTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ccCccCCCCeEeecCCCCCCccCCCCCCCeEEEEECCcEEEEEEEEEcCCCCCCCCCEEEeeHHHHHHHHHHHhC
Confidence            555578999999987777789999999999999999999999999999999988899999999999999999874

>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ...

Probab=100.00  E-value=7.3e-43  Score=298.81  Aligned_cols=173  Identities=42%  Similarity=0.858  Sum_probs=146.6

Q ss_pred             eeCCeeCCCCCCceEEEEEe---cCeeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~---~~~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.+|..++|||||+|..   .+.++|+||||+++||||||||+..                                
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~   80 (238)
T 3bg8_A            1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEII   80 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEECSSSCEEEEEEEEEETTEEEECGGGGTTCCCGGGEEEECSCSBGGGCCTTSCCEEEEEEE
T ss_pred             CCCCeECCCCCcCcEEEEEeecCCCcEEEEEEEeeCCEEEECHHHCCCCCCCceEEEEEeeccCCcCCCCceEEeeEEEE
Confidence            68999999999999999987   3578999999999999999999843                                


Q ss_pred             ----------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                .+||.|                  |.... ...+..++++|||.+...+..+..|+++.+++++.++|+.
T Consensus        81 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (238)
T 3bg8_A           81 IHDQYKMAESGYDIALLKLETTVNYTDSQRPISLPSKGERNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK  160 (238)
T ss_dssp             ECTTCCCGGGSCCCEEEEESSCCCCBTTBCCCBCCCGGGGSSCCCCEEEEESCCSSSSCCCCSBCEEEECCEECHHHHHH
T ss_pred             ECCCCCCCCCCCcEEEEEECCccccCCCcccCCCCCCccCcCCCCeEEEEecCCCCCCCChhhhhcEeeEEEECHHHhhh
Confidence                      122322                  21111 2346789999999887666667889999999999999998


Q ss_pred             hhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         183 TAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       183 ~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+....+++.|||++......+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||++|++||+++|+.
T Consensus       161 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  237 (238)
T 3bg8_A          161 RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQA  237 (238)
T ss_dssp             HCTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             hhcCCCCCCCeEeecCCCCCCCcCCCCCCcceEEEECCeEEEEEEEEECCCCCCCCCCcEEEeHHHHHHHHHHHHhc
Confidence            75444688999999876666899999999999999899999999999999998888899999999999999999864

>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A*

Probab=100.00  E-value=2.6e-42  Score=295.79  Aligned_cols=173  Identities=42%  Similarity=0.846  Sum_probs=146.6

Q ss_pred             eeCCeeCCCCCCceEEEEEe---cCeeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~---~~~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.+|..++|||||+|+.   .+.++|+||||+++||||||||+..                                
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~   80 (241)
T 2any_A            1 IVGGTESSWGEWPWQVSLQVKLTAQRHLCGGSLIGHQWVLTAAHCFDGLPLQDVWRIYSGILELSDITKDTPFSQIKEII   80 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGSSCCCSTTEEEECSCSBGGGCCTTSCCBCEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCCceEEEEEEecCCEEEECHHHcCCCCCCccEEEEeeeeeccccccCceEEeeEEEE
Confidence            68999999999999999987   4578999999999999999999843                                


Q ss_pred             ----------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                .+||.|                  |.... ...+..++++|||.+...+..+..|+++.+++++.++|+.
T Consensus        81 ~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (241)
T 2any_A           81 IHQNYKVSEGNHDIALIKLQAPLEYTEFQKPISLPSKGDTSTIYTNCWVTGWGFSKEKGEIQNILQKVNIPLVTNEECQK  160 (241)
T ss_dssp             ECTTCCTTSSSSCCEEEEESSCCCCBTTBCCCCCCCSSCCSTTCSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHT
T ss_pred             ECCCCCCCCCCCCeEEEEeCCcccCCCCcceeEcCCcccCCCCCCeEEEEecccCCCCCCcCchhheeEeEEeCHHHhhh
Confidence                      112222                  22111 2346789999999887666667889999999999999998


Q ss_pred             hhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         183 TAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       183 ~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+....+++.|||++......+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||++|++||+++|++
T Consensus       161 ~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~  237 (241)
T 2any_A          161 RYQDYKITQRMVCAGYKEGGKDACKGDSGGPLVCKHNGMWRLVGITSWGEGCARREQPGVYTKVAEYMDWILEKTQS  237 (241)
T ss_dssp             TSCTTCSCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHSC
T ss_pred             HhccCCCCcCcEeecCCCCCCccCCCCCCCcEEEEECCEEEEEEEEEecCCCCCCCCCeEEEEHHHhHHHHHHHhhc
Confidence            65444588999999876666899999999999999899999999999999998878899999999999999999875

>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A

Probab=100.00  E-value=1.2e-42  Score=299.15  Aligned_cols=175  Identities=38%  Similarity=0.723  Sum_probs=145.6

Q ss_pred             CCceeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          84 KTRIVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        84 ~~ri~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      ..||+||.+|..++|||+|+|+.+ +.++|+||||+++||||||||+..                               
T Consensus        15 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~   94 (247)
T 1ddj_A           15 PGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRL   94 (247)
T ss_dssp             CTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGTTCSCGGGCEEEESCSBSSSCCTTCEEEEEEEE
T ss_pred             CCCcCCCEECCCCCCCcEEEEEcCCCCeEEEEEEeeCCEEEEcHHHcCCCCCCccEEEEEcccccCccCCceEEEEeeeE
Confidence            358999999999999999999874 678999999999999999999853                               


Q ss_pred             -----CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhh-cC
Q psy8662         132 -----GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA-YE  186 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~-~~  186 (260)
                           .+||.|                  |.... ...+..++++|||.+... ..+..|+++.+++++.++|++.. ..
T Consensus        95 ~~hp~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~i~~~~~C~~~~~~~  173 (247)
T 1ddj_A           95 FLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQGT-FGAGLLKEAQLPVIENKVCNRYEFLN  173 (247)
T ss_dssp             EECTTSCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCCSSS-TTTTBCEEEEEEEECHHHHTSTTTTT
T ss_pred             EcCCCCCcEEEEEeCCceeeCCCEEeeecCCcccCCCCCCEEEEEEcccCCCC-CCCccceEEeeeecCHHHhcchhccC
Confidence                 112222                  21111 124678999999987633 34678999999999999998742 24


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ..++++|||++...++.+.|+|||||||++..+++|+|+||+|||.+|+..+.|+|||||++|++||+++|++
T Consensus       174 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  246 (247)
T 1ddj_A          174 GRVQSTELCAGHLAGGTDSCQGDAGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN  246 (247)
T ss_dssp             TCCCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECGGGCCBBTTBCEEEEEGGGSHHHHHHHHHT
T ss_pred             CCCcCCeEeecCCCCCCccccCcCcCcEEEEECCcEEEEEEEEECCCCCCCCCCEEEEEhHHhHHHHHHHhhc
Confidence            4678999999876666899999999999999889999999999999998878899999999999999999975

>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ...

Probab=100.00  E-value=1.9e-42  Score=297.72  Aligned_cols=173  Identities=36%  Similarity=0.681  Sum_probs=142.6

Q ss_pred             CCceeCCeeCCCCCCceEEEEEe-cCeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          84 KTRIVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        84 ~~ri~gG~~a~~~~~Pw~v~l~~-~~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      ..||+||.+|..++|||||+|+. .+.++|+||||+++||||||||+..                               
T Consensus        13 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp   92 (245)
T 1t8o_A           13 LSRIVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGVTTSDVVVAGEFDQGSSSEKIQKLKIAKVFKNS   92 (245)
T ss_dssp             ---CBTCEECCTTSSTTEEEEECTTCCEEEEEEEEETTEEEECGGGCCCTTSEEEESCSBTTCSSSCCEEEEEEEEEECT
T ss_pred             CCceECCEECCCCCCCceEEEEcCCCCeEEEEEEeeCCEEEEcHHhCcCCCcEEEEeeeecCCCCCCcEEEEEEEEEeCC
Confidence            35899999999999999999987 4678999999999999999999742                               


Q ss_pred             -------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCC-CCccceEEEEEeeChhhHhhhh
Q psy8662         132 -------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGS-TSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       132 -------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~-~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                             .+||.|                  |.... ...+..++++|||.+...+. .+..|+++.+++++.++|++.+
T Consensus        93 ~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~  172 (245)
T 1t8o_A           93 KYNSLTINNDITLLKLSTAASFSQTVSAVCLPSASDDFAAGTTCVTTGWGLTRYTNANTPDRLQQASLPLLSNTNCKKYW  172 (245)
T ss_dssp             TCCTTTCCSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSCC--CCCCSBCEEEEEEEECHHHHHHHH
T ss_pred             CCCCCCCCCCEEEEEECCCCcCCCceeeeECCCCccCCCCCCEEEEEEeCCCCCCCCCCcchheEEEEeeEcchhhhHhh
Confidence                   122222                  22221 22578899999998765443 5678999999999999998853


Q ss_pred             cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         185 YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       185 ~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                       ...+++.|||++  ..+.+.|+|||||||++..+++|+|+||+|||..|+..+.|++||||+.|++||+++|+.
T Consensus       173 -~~~~~~~~~Ca~--~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~c~~~~~p~vyt~V~~~~~WI~~~~~~  244 (245)
T 1t8o_A          173 -GTKIKDAMICAG--ASGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGVYARVTALVNWVQQTLAA  244 (245)
T ss_dssp             -GGGCCTTEEEEE--CSSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSEEEEEEGGGTHHHHHHHHHT
T ss_pred             -cCcCCCceEEcc--CCCCccCcccCcCCEEEEECCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcc
Confidence             446789999998  345789999999999999999999999999999998878899999999999999999874

>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens}

Probab=100.00  E-value=3.5e-42  Score=293.33  Aligned_cols=172  Identities=38%  Similarity=0.751  Sum_probs=145.6

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||+|+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~~~~v~~G~~~~~~~~~~~v~~i~~hp~y~~   80 (232)
T 2oq5_A            1 IVGGTEVEEGEWPWQASLQWDGSHRCGATLINATWLVSAAHCFTTYKNPARWTASFGVTIKPSKMKRGLRRIIVHEKYKH   80 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCCCGGGEEEEESSBSTTCSEEEEEEEEEECTTCCT
T ss_pred             CCCCEECCCCCCCeeEEEEeCCCeeEEEEEEcCCEEEECHHHcCCCCCCceEEEEEeeEECCCceEEeEEEEEeCCCCCC
Confidence            689999999999999999998899999999999999999999853                                   


Q ss_pred             ---CCCcee------------------eccCcc-cCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhh-cCCC
Q psy8662         132 ---GLGIWV------------------TIRGKS-FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA-YENR  188 (260)
Q Consensus       132 ---~~~i~l------------------~~~~~~-~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~-~~~~  188 (260)
                         .+||.|                  |..... ..+..++++|||.+...+..+..|+++.+++++.++|+..+ +...
T Consensus        81 ~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~  160 (232)
T 2oq5_A           81 PSHDYDISLAELSSPVPYTNAVHRVCLPDASYEFQPGDVMFVTGFGALKNDGYSQNHLRQAQVTLIDATTCNEPQAYNDA  160 (232)
T ss_dssp             TCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHTSTTTTTTC
T ss_pred             CCCCCCEEEEEecCCCccCCceeEeECCCccccCCCCCEEEEEECCccCCCCCCCceeeEeEEEEeCHHHcCCccccCCc
Confidence               112222                  222211 24778999999988766666788999999999999998753 3446


Q ss_pred             CCCCeEEeecCCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         189 ITPNMLCAGYPKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       189 i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ++++|||++...+..+.|+|||||||++.. +++|+|+||+|||.+|+..+.|++||||++|++||+++++
T Consensus       161 ~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  231 (232)
T 2oq5_A          161 ITPRMLCAGSLEGKTDACQGDSGGPLVSSDARDIWYLAGIVSWGDECAKPNKPGVYTRVTALRDWITSKTG  231 (232)
T ss_dssp             CCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSBTTBCEEEEETGGGHHHHHHHHC
T ss_pred             cCCCEEeecCCCCCCccCCCCCCCcEEEECCCCCEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            788999998766668999999999999975 6899999999999999887889999999999999999875

>2olg_A Pro-phenoloxidase activating enzyme-I; prophenoloxidase activating factor-I, PPAF-I, serine proteas hydrolase; HET: NAG; 1.70A {Holotrichia diomphalia}

Probab=100.00  E-value=2.6e-42  Score=301.88  Aligned_cols=180  Identities=37%  Similarity=0.719  Sum_probs=148.5

Q ss_pred             ccCCCCCCCceeCCeeCCCCCCceEEEEEecC-----eeeeeeEEEeCCEEEeccccccc--------------------
Q psy8662          77 TCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCVHQ--------------------  131 (260)
Q Consensus        77 ~cg~~~~~~ri~gG~~a~~~~~Pw~v~l~~~~-----~~~C~GtLIs~~~VLTAAhCv~~--------------------  131 (260)
                      .||......||+||.+|..++|||||+|.+..     .++|+||||+++||||||||+..                    
T Consensus        13 ~CG~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~V~~G~~~~~   92 (278)
T 2olg_A           13 DCGYQVEADKILNGDDTVPEEFPWTAMIGYKNSSNFEQFACGGSLINNRYIVTAAHCVAGRVLRVVGALNKVRLGEWNTA   92 (278)
T ss_dssp             SCSCCCCCCCSCCSSBCCTTSSTTEEEEEEECTTCCEEEEEEEEECSSSEEEECGGGTSTHHHHHTCEEEEEEESCSBTT
T ss_pred             HhCCCCCCCceECCEECCCCCCCceEEEEEecCCCCcceeEEEEEEeCCEEEEhHHhCCCcccccccceeEEEeCcccCC
Confidence            67765667899999999999999999998742     68999999999999999999741                    


Q ss_pred             --------------------------------------CCCcee------------------eccC-cccCCceEEEEee
Q psy8662         132 --------------------------------------GLGIWV------------------TIRG-KSFSNKTGIVTGW  154 (260)
Q Consensus       132 --------------------------------------~~~i~l------------------~~~~-~~~~~~~~~v~Gw  154 (260)
                                                            .+||.|                  |... ....+..++++||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~v~~i~~Hp~y~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GW  172 (278)
T 2olg_A           93 TDPDCYGAVRVCVPDKPIDLGIEETIQHPDYVDGSKDRYHDIALIRLNRQVEFTNYIRPVCLPQPNEEVQVGQRLTVVGW  172 (278)
T ss_dssp             CSSCEETTTTEECSSCCEEECEEEEEECTTCCTTCSSCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEES
T ss_pred             CCccccccccccCCCCceEEeeEEEEECCCCcCCCCCCCCeEEEEEECCCCcCCCCcCccCcCCCCCCcCCCCEEEEEcC
Confidence                                                  022322                  2111 1235778999999


Q ss_pred             eecCCCCCCCccceEEEEEeeChhhHhhhhcC--CCCCCCeEEeecCCCCCCCCcCCCCCceEEe-eCCeeEEEEEEeeC
Q psy8662         155 GVQKQGGSTSDTLLEVEVPILSNAECKKTAYE--NRITPNMLCAGYPKGEKDSCQGDSGGPLHYA-NETVHHIVGVVSWG  231 (260)
Q Consensus       155 g~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~--~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~-~~~~~~L~GI~S~g  231 (260)
                      |.+..+ ..+..|+++.+++++.++|+..+..  ..++++||||+... +.+.|+|||||||++. .+++|+|+||+|||
T Consensus       173 G~t~~~-~~~~~l~~~~~~i~~~~~C~~~~~~~~~~~~~~~~Ca~~~~-~~~~C~GDSGGPL~~~~~~~~~~l~GIvS~g  250 (278)
T 2olg_A          173 GRTETG-QYSTIKQKLAVPVVHAEQCAKTFGAAGVRVRSSQLCAGGEK-AKDSCGGDSGGPLLAERANQQFFLEGLVSFG  250 (278)
T ss_dssp             CCSSSC-CCCSBCEEEEEEBCCGGGGGGGGSSTTCCCCTTEEEECCTT-CTTCCCCCTTCEEEEEEGGGEEEEEEEEEEC
T ss_pred             CcCCCC-CccchhhcccccccCHHHHHHHhccccccCCCceEeeecCC-CCeeCCCccCcceEEEcCCCcEEEEEEEEEC
Confidence            987653 4577899999999999999886532  35789999998654 4799999999999998 56899999999999


Q ss_pred             CCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         232 EGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       232 ~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .+|+..+.|+|||||++|++||+++|+
T Consensus       251 ~~C~~~~~p~vyt~V~~y~~WI~~~i~  277 (278)
T 2olg_A          251 ATCGTEGWPGIYTKVGKYRDWIEGNIR  277 (278)
T ss_dssp             CBCSTTCBCEEEEEGGGGHHHHHTTCC
T ss_pred             CCCCCCCCCcEEeEHHHHHHHHHHhhC
Confidence            999988889999999999999999875

>1z8g_A Serine protease hepsin; serine protease hepsin, protease, hydrolase-hydrolase inhibi complex; HET: AR7; 1.55A {Homo sapiens} SCOP: b.47.1.2 d.170.1.2 PDB: 3t2n_A 1o5e_H* 1o5f_H* 1p57_B* 1o5e_L* 1o5f_L* 1p57_A*

Probab=100.00  E-value=3.9e-42  Score=313.07  Aligned_cols=183  Identities=41%  Similarity=0.814  Sum_probs=151.7

Q ss_pred             ccCCC-CCCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------
Q psy8662          77 TCGAV-NKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------  131 (260)
Q Consensus        77 ~cg~~-~~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------  131 (260)
                      .||.. ....||+||.++..++|||||+|++++.++|+||||+++||||||||+..                        
T Consensus       107 ~Cg~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~V~~G~~~~~~~~~~~  186 (372)
T 1z8g_A          107 DCGRRKLPVDRIVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQ  186 (372)
T ss_dssp             CCSCCCCC---CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEE
T ss_pred             ccCCcCCCCCceECCEECCCCCCCcEEEEEeCCceEEEEEEecCCEEEEChhhcCCCCCccceEEEEEeeEeccCCCCcE
Confidence            46765 34579999999999999999999998899999999999999999999831                        


Q ss_pred             ----------CC-------------Ccee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceE
Q psy8662         132 ----------GL-------------GIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLE  169 (260)
Q Consensus       132 ----------~~-------------~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~  169 (260)
                                +|             ||.|                  |.... ...+..++++|||.+...+..+..|++
T Consensus       187 ~~V~~i~~Hp~y~~~~~~~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~~~~~~~L~~  266 (372)
T 1z8g_A          187 LGVQAVVYHGGYLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQE  266 (372)
T ss_dssp             ECEEEEEEETTCGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEE
T ss_pred             EEEEEEEECCCccccccCCCCCCCccEEEEEECCCCCCCCceeccccCCcccCCCCCCEEEEEecCCCCCCCCCCceeeE
Confidence                      23             2332                  21111 124678999999998766666788999


Q ss_pred             EEEEeeChhhHhhh-hcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeC----CeeEEEEEEeeCCCCCCCCCCcEEE
Q psy8662         170 VEVPILSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANE----TVHHIVGVVSWGEGCAQENYPGVYA  244 (260)
Q Consensus       170 ~~v~vi~~~~C~~~-~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~----~~~~L~GI~S~g~~C~~~~~p~vyt  244 (260)
                      +.+++++.++|+.. .+...++++||||+...++.++|+|||||||++..+    ++|+|+||+|||.+|+..+.|+|||
T Consensus       267 ~~v~ii~~~~C~~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~~~~~lvGIvS~G~~C~~~~~p~vyt  346 (372)
T 1z8g_A          267 ARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYT  346 (372)
T ss_dssp             EEEEEECHHHHTSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEE
T ss_pred             EEEEecChHHhCcchhcCCcCCCCeEeeecCCCCCcCCCCCCccceEeccCcCCCCCEEEEEEEEeCCCCCCCCCCeEEE
Confidence            99999999999864 345578899999987766789999999999999875    8999999999999999888999999


Q ss_pred             echhhHHHHHHHhhc
Q psy8662         245 RVNRYLTWIKNNTID  259 (260)
Q Consensus       245 ~V~~y~~WI~~~~~~  259 (260)
                      ||++|++||+++|+.
T Consensus       347 ~V~~y~~WI~~~i~~  361 (372)
T 1z8g_A          347 KVSDFREWIFQAIKT  361 (372)
T ss_dssp             EGGGGHHHHHHHHHH
T ss_pred             EHHHHHHHHHHHHhc
Confidence            999999999999874

>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A*

Probab=100.00  E-value=6.3e-42  Score=295.95  Aligned_cols=173  Identities=36%  Similarity=0.736  Sum_probs=146.2

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+..+.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~hp   80 (261)
T 3gyl_B            1 ITGGSSAVAGQWPWQVSITYEGVHVCGGSLVSEQWVLSAAHCFPSEHHKEAYEVKLGAHQLDSYSEDAKVSTLKDIIPHP   80 (261)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGSCTTSCGGGEEEEESCSBTTSCCSSCEEECEEEEEECT
T ss_pred             CCCCcCCCCCCCCcEEEEeeCCceEEEEEEEcCCEEEECHHHCCCCCCcccEEEEeCceeccCCCCCceEEEEEEEEECC
Confidence            689999999999999999999999999999999999999999842                                   


Q ss_pred             C-------CCcee------------------eccCcc-cCCceEEEEeeeecCCCCC--CCccceEEEEEeeChhhHhhh
Q psy8662         132 G-------LGIWV------------------TIRGKS-FSNKTGIVTGWGVQKQGGS--TSDTLLEVEVPILSNAECKKT  183 (260)
Q Consensus       132 ~-------~~i~l------------------~~~~~~-~~~~~~~v~Gwg~~~~~~~--~~~~l~~~~v~vi~~~~C~~~  183 (260)
                      +       +||.|                  |..... ..+..++++|||.+.....  .+..|+++.+++++.+.|+..
T Consensus        81 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~  160 (261)
T 3gyl_B           81 SYLQEGSQGDIALLQLSRPITFSRYIRPISLPAAQASFPNGLHCTVTGWGHVAPSVSLLTPKPLQQLEVPLISRETCNSL  160 (261)
T ss_dssp             TCCSTTCSCCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHHH
T ss_pred             CcCCCCCCCcEEEEEECCCccCCCceeccCCCCcccCCCCCCEEEEEecCCCCCCCCccCCccceEEEEEEECHHHhhhh
Confidence            1       12333                  221111 2577899999998765443  367899999999999999886


Q ss_pred             hc-------CCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHH
Q psy8662         184 AY-------ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN  256 (260)
Q Consensus       184 ~~-------~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  256 (260)
                      +.       ...++++|||++......+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||+|+.|++||+++
T Consensus       161 ~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~lvGI~S~g~~c~~~~~p~vyt~v~~~~~WI~~~  240 (261)
T 3gyl_B          161 YNIDAKPEEPHFVQEDMVCAGYVEGGKDACQGDSGGPLSCPVEGLWYLTGIVSWGDACGARNRPGVYTLASSYASWIQSK  240 (261)
T ss_dssp             HTTTCCTTCCCCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEECCCCCSSCTTCCEEEEEGGGGHHHHHHH
T ss_pred             hcccccccccccccCCeEeeCCCCCCCccCCCCCCCeeEEEeCCEEEEEEEEecCCCCCCCCCCCEEEEHHHhHHHHHHH
Confidence            43       23578899999876667899999999999999999999999999999999888899999999999999999


Q ss_pred             hhc
Q psy8662         257 TID  259 (260)
Q Consensus       257 ~~~  259 (260)
                      +++
T Consensus       241 i~~  243 (261)
T 3gyl_B          241 VTE  243 (261)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            864

>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida}

Probab=100.00  E-value=6.6e-42  Score=292.39  Aligned_cols=172  Identities=35%  Similarity=0.719  Sum_probs=145.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecC--eeeeeeEEEeCCEEEeccccccc---------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK--RFYCGATLINNLYVLTAAHCVHQ---------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~--~~~C~GtLIs~~~VLTAAhCv~~---------------------------------  131 (260)
                      |+||.++..++|||+|+|+..+  .++|+||||+++||||||||+..                                 
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h   80 (238)
T 1ym0_A            1 IVGGIEARPYEFPWQVSVRRKSSDSHFCGGSIINDRWVVCAAHCMQGEAPALVSLVVGEHDSSAASTVRQTHDVDSIFVN   80 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEEGGGTEEEEEEEEEETTEEEECHHHHTTCCGGGEEEEESCSBTTSCCSSCEEEEEEEEEEC
T ss_pred             CCCCEECCCCccCCEEEEEeCCCCceEEEEEEeeCCEEEECHHhCCCCCCceEEEEEcccccCCCCCCceEEEEEEEEEC
Confidence            6899999999999999999876  79999999999999999999853                                 


Q ss_pred             --------CCCce------------------eeccCcccCCceEEEEeeeecCCCCCC-CccceEEEEEeeChhhHhhhh
Q psy8662         132 --------GLGIW------------------VTIRGKSFSNKTGIVTGWGVQKQGGST-SDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       132 --------~~~i~------------------l~~~~~~~~~~~~~v~Gwg~~~~~~~~-~~~l~~~~v~vi~~~~C~~~~  184 (260)
                              .+||.                  |+.....+.+..++++|||.+...+.. +..|+++.+++++.++|+..+
T Consensus        81 p~y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  160 (238)
T 1ym0_A           81 ENYDPATLENDVSVIKTAVAITFDINVGPICAPDPANDYVYRKSQCSGWGTINSGGVCCPAVLRYVTLNITTNAFCDAVY  160 (238)
T ss_dssp             TTCCTTTCTTCCEEEEESSCCCCSSSCCCCBCCCTTCCCTTCEEEEEESCCSSTTCCSCCSBCEEEEEEECCHHHHHHHC
T ss_pred             CCCCCCCCcccEEEEEeCCCccccCcccccCCCCCcCCCCCCceEEEeecCCCCCCCcCCccceEEEEEeeCHHHHhHhh
Confidence                    11222                  232222336788999999988765544 778999999999999999865


Q ss_pred             cCCCCCCCeEEeecCCCC--CCCCcCCCCCceEEee-CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         185 YENRITPNMLCAGYPKGE--KDSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       185 ~~~~i~~~~~Ca~~~~~~--~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ....+.++|||++...+.  .+.|+|||||||++.. +++|+|+||+|||.+|+ .+.|++||||+.|++||+++|++
T Consensus       161 ~~~~~~~~~~Ca~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~C~-~~~p~vyt~v~~~~~WI~~~i~~  237 (238)
T 1ym0_A          161 TSDTIYDDMICATDNTGMTDRDSCQGDSGGPLSVKDGSGIFSLVGIVSWGIGCA-SGYPGVYSRVGFHAGWITDTITN  237 (238)
T ss_dssp             TTSCCCTTEEEEECSSCSSSCBCCTTTTTCEEEEECTTCCEEEEEEEEECSSSS-SSSCEEEEEHHHHHHHHHHHHHC
T ss_pred             cccccCCCeEEecCCCCCCcCccCCCccCCeeEEECCCCCEEEEEEEeECCCCC-CCCCcEEEEHHHhHHHHHHHhcC
Confidence            444688999999865544  7899999999999987 68999999999999998 67899999999999999999975

>2wph_S Coagulation factor IXA heavy chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpj_S* 2wpk_S* 2wpl_S* 2wpi_S* 2wpm_S 3lc3_A* 1rfn_A* 3lc5_A* 3kcg_H* 1x7a_C* 1pfx_C*

Probab=100.00  E-value=9.2e-42  Score=291.15  Aligned_cols=172  Identities=37%  Similarity=0.739  Sum_probs=146.0

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc--------------------------------C--
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ--------------------------------G--  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~--------------------------------~--  132 (260)
                      |+||.+|..++|||+|+|...+.++|+||||+++||||||||+..                                +  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~   80 (235)
T 2wph_S            1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNFN   80 (235)
T ss_dssp             CBSCEECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCTTSCCEEEESCCBTTSCCSCCEEEEEEEEEECTTTT
T ss_pred             CCCCEECCCCCCCeEEEEccCCCeeEEEEEEeCCEEEECHHHCcCCCCEEEEEcccccCCCCCCcEEeeeEEEEeCCCCc
Confidence            689999999999999999887789999999999999999999853                                1  


Q ss_pred             -------CCceeeccCc---------------------ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhh
Q psy8662         133 -------LGIWVTIRGK---------------------SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       133 -------~~i~l~~~~~---------------------~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                             +||.|.....                     ...+..++++|||.+...+..+..|+++.+++++.++|+.. 
T Consensus        81 ~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~-  159 (235)
T 2wph_S           81 AAINTYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS-  159 (235)
T ss_dssp             SSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHHTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHHHHT-
T ss_pred             ccCCcCCCCEEEEEECCcCcCCCCccccCCCCCcccccccCCccEEEEeCCCccCCCCccchheEeeeeeeCHHHhcCc-
Confidence                   1233311100                     01356899999998876666678899999999999999885 


Q ss_pred             cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         185 YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       185 ~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +...++++|||++......+.|+|||||||++..+++|+|+||+|||.+|+..+.|+|||||+.|++||+++++.
T Consensus       160 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (235)
T 2wph_S          160 TKFTITNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTKL  234 (235)
T ss_dssp             CSSCCCTTEEEESCTTCSCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHCCC
T ss_pred             ccCCCCCCEEEeCCCCCCCccCCCCCCCceEEeECCeEEEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            445678999999876666899999999999999899999999999999999888899999999999999999875

>2bz6_H Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: b.47.1.2 PDB: 1cvw_H* 1dva_H* 1fak_H* 1j9c_H* 1jbu_H 1dan_H 1klj_H 1o5d_H* 1qfk_H* 1w0y_H* 1w2k_H* 1w7x_H* 1w8b_H* 1wqv_H* 1wss_H* 1wtg_H* 1wun_H* 1wv7_H* 1ygc_H* 1z6j_H* ...

Probab=100.00  E-value=1.1e-41  Score=294.12  Aligned_cols=173  Identities=38%  Similarity=0.730  Sum_probs=146.0

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp   80 (254)
T 2bz6_H            1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS   80 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEET
T ss_pred             CCCCEECCCCCcCCEEEEEeCCCcEEEEEEecCCEEEECHHHcCCCCCcceEEEEECCcccCCCCCCcEEEEEEEEEECC
Confidence            689999999999999999988889999999999999999999853                                   


Q ss_pred             -------CCCcee------------------eccCc----ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 -------GLGIWV------------------TIRGK----SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 -------~~~i~l------------------~~~~~----~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                             .+||.|                  +....    ...+..++++|||.+...+..+..|+++.+++++.++|+.
T Consensus        81 ~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~  160 (254)
T 2bz6_H           81 TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ  160 (254)
T ss_dssp             TCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHH
T ss_pred             CCCCCCCcCcEEEEEECCccccCCCccceECCCCccccccccCCCcEEEEeCcccCCCCCCChhheeeeeeeecHHHHhh
Confidence                   122332                  11100    1236789999999887666667889999999999999987


Q ss_pred             hhcC----CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         183 TAYE----NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       183 ~~~~----~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .+..    ..+++.|||++...+..+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||+.|++||+++|+
T Consensus       161 ~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  240 (254)
T 2bz6_H          161 QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR  240 (254)
T ss_dssp             HSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHT
T ss_pred             hhhccccCCccCCCEEeecCCCCCCccccccCCCceEEeECCEEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHHh
Confidence            6432    257889999987666688999999999999988999999999999999987889999999999999999987


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      .
T Consensus       241 ~  241 (254)
T 2bz6_H          241 S  241 (254)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2f91_A Hepatopancreas trypsin; trypsin, canonical inhibitor, atomic resolution, hydrolase/hydrolase inhibitor complex; 1.20A {Pontastacus leptodactylus} SCOP: b.47.1.2

Probab=100.00  E-value=7.8e-42  Score=292.23  Aligned_cols=170  Identities=41%  Similarity=0.809  Sum_probs=142.8

Q ss_pred             eeCCeeCCCCCCceEEEEEec--Ce--eeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK--KR--FYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~--~~--~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||.+|..++|||||+|+..  +.  ++|+||||+++||||||||+..                               
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~   80 (237)
T 2f91_A            1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVS   80 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEE
T ss_pred             CCCccCCCCCCCCcEEEEEEecCCCCcceEEEEEeeCCEEEEcHHhCCCCccCCcccEEEEECCeeccCCCCccEEEEEE
Confidence            689999999999999999864  22  4499999999999999999842                               


Q ss_pred             -------------CCCcee------------------eccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhH
Q psy8662         132 -------------GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       132 -------------~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C  180 (260)
                                   .+||.|                  +... ...+..++++|||.+..++..+..|+++.+++++.++|
T Consensus        81 ~i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~-~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  159 (237)
T 2f91_A           81 KIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQG-HTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDC  159 (237)
T ss_dssp             EEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTT-CCCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHH
T ss_pred             EEEECCCCCCCCCCCcEEEEEECCCcccCCceeeccCCCCC-CCCCCcEEEEECCcCCCCCCccceeeEEEEeEcCHHHh
Confidence                         112222                  2111 13567899999998876666678899999999999999


Q ss_pred             hhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       181 ~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +..+....+.++|||++......+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||++|++||+++|
T Consensus       160 ~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (237)
T 2f91_A          160 RADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             HHHHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             hhhhCCCCcCCCeEEEecCCCCCCCCCCcCCCCeEEecCCCEEEEEEEEecCCCCCCCCCcEEEEHHHhHHHHHHhc
Confidence            98654346788999998766668999999999999998899999999999999998888999999999999999986

>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A

Probab=100.00  E-value=1.3e-41  Score=298.30  Aligned_cols=174  Identities=34%  Similarity=0.734  Sum_probs=143.2

Q ss_pred             CceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc---------------------------------
Q psy8662          85 TRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ---------------------------------  131 (260)
Q Consensus        85 ~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~---------------------------------  131 (260)
                      .||+||.++..++|||||+|+.. .++|+||||+++||||||||+..                                 
T Consensus        34 ~rIvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~  112 (283)
T 1yc0_A           34 PRIIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIP  112 (283)
T ss_dssp             --CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEE
T ss_pred             CceECCeECCCCCCCeEEEEEcC-CcEEEEEEeeCCEEEECHHHcCCCCCCceEEEEEeeeecccCCCceEEEeeEEEEe
Confidence            58999999999999999999875 68999999999999999999843                                 


Q ss_pred             --C--------CCceeeccC----------------------c-ccCCceEEEEeeeecCCCCC-CCccceEEEEEeeCh
Q psy8662         132 --G--------LGIWVTIRG----------------------K-SFSNKTGIVTGWGVQKQGGS-TSDTLLEVEVPILSN  177 (260)
Q Consensus       132 --~--------~~i~l~~~~----------------------~-~~~~~~~~v~Gwg~~~~~~~-~~~~l~~~~v~vi~~  177 (260)
                        +        +||.|....                      . ...+..++++|||.+..+.. .+..|+++.+++++.
T Consensus       113 hp~y~~~~~~~~DIALl~L~~~~~~~v~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~L~~~~v~i~~~  192 (283)
T 1yc0_A          113 YTLYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVAD  192 (283)
T ss_dssp             CTTCCTTSTTTTCCEEEEECCBTTBSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCSCCSBCEEEEEEBCCH
T ss_pred             cCccccCCCCCCceEEEEeCCCccccccccCceeeeECCCCcCCCCCCCEEEEEEeCccCCCCCccCchheEeEEEEECH
Confidence              1        123321110                      1 12467899999998765433 467899999999999


Q ss_pred             hhHhhhh-cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHH
Q psy8662         178 AECKKTA-YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN  256 (260)
Q Consensus       178 ~~C~~~~-~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  256 (260)
                      ++|+... +...++++|||++...+..+.|+|||||||++..+++|+|+||+|||.+|+..+.|+|||||++|++||+++
T Consensus       193 ~~C~~~~~~~~~~~~~~iCa~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GIvS~g~~C~~~~~p~vyt~V~~y~~WI~~~  272 (283)
T 1yc0_A          193 HKCSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDR  272 (283)
T ss_dssp             HHHTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred             HHhcCccccCCcCCCCEEeeCCCCCCCccCCCCCCCceEEEECCcEEEEEEEEECCCCCCCCCCeEEEEhhhHHHHHHHH
Confidence            9998742 344578899999876666899999999999999899999999999999999878899999999999999999


Q ss_pred             hhc
Q psy8662         257 TID  259 (260)
Q Consensus       257 ~~~  259 (260)
                      |+.
T Consensus       273 i~~  275 (283)
T 1yc0_A          273 IRP  275 (283)
T ss_dssp             CC-
T ss_pred             hcC
Confidence            874

>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A*

Probab=100.00  E-value=1.4e-41  Score=290.43  Aligned_cols=171  Identities=39%  Similarity=0.724  Sum_probs=145.3

Q ss_pred             eeCCeeCCCCCCceEEEEEecC-eeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~-~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||.++..++|||+|+|+..+ .++|+||||+++||||||||+..                                  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~v   80 (241)
T 3ncl_A            1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRL   80 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCSBTTCTTSTTCEEEEE
T ss_pred             CCCCeECCCCCCCcEEEEEcCCCceEEEEEEeeCCEEEEcHHhcccCCCccccCCceEEEEEeccccccCCCCCceEEEE
Confidence            6899999999999999998765 58999999999999999999832                                  


Q ss_pred             --------------CCCcee------------------eccCcc-cCCceEEEEeeeecCCCCCCCccceEEEEEeeChh
Q psy8662         132 --------------GLGIWV------------------TIRGKS-FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNA  178 (260)
Q Consensus       132 --------------~~~i~l------------------~~~~~~-~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~  178 (260)
                                    .+||.|                  |..... ..+..++++|||.+..++..+..|+++.+++++.+
T Consensus        81 ~~i~~hp~y~~~~~~~DIALl~L~~~~~~~~~v~piclp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~  160 (241)
T 3ncl_A           81 KRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPISLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQT  160 (241)
T ss_dssp             EEEEECTTCCTTTCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHH
T ss_pred             EEEEECCCCCCCCCCCcEEEEEECCCCcccCccCceEcCCcccCCCCCCEEEEEEecccCCCCCcCceeeEEeEEEECHH
Confidence                          112222                  222211 25788999999998776666788999999999999


Q ss_pred             hHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         179 ECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       179 ~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +|+.. +...++++|||++...+..+.|+|||||||++.. +++|+|+||+|||.+|+..+.|++||||++|++||++++
T Consensus       161 ~C~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~g~~~l~Gi~S~g~~c~~~~~p~vyt~v~~y~~WI~~~~  239 (241)
T 3ncl_A          161 TCENL-LPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT  239 (241)
T ss_dssp             HHHHH-STTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHH
T ss_pred             Hhhhh-cccCCCCCeEEeCCCCCCCccCCCcCCCCEEEEcCCCcEEEEEEEEECCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence            99985 5567899999998777778999999999999764 689999999999999998889999999999999999988


Q ss_pred             h
Q psy8662         258 I  258 (260)
Q Consensus       258 ~  258 (260)
                      +
T Consensus       240 ~  240 (241)
T 3ncl_A          240 G  240 (241)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2bdy_A Thrombin; thrombin, complex structure, hydrolase, hydrolase-hydrolase complex; HET: TYS UNB; 1.61A {Homo sapiens} SCOP: b.47.1.2 PDB: 3k65_B 1doj_A* 1hag_E* 1xm1_A* 1nu9_A* 3sqe_E 3sqh_E 1jwt_A* 1d9i_A* 1d6w_A* 1g37_A* 1nm6_A* 1nt1_A* 1sl3_A* 1ta2_A* 1ta6_A* 1z71_A* 1zgi_A* 1zgv_A* 1zrb_A* ...

Probab=100.00  E-value=8e-42  Score=300.69  Aligned_cols=175  Identities=38%  Similarity=0.683  Sum_probs=140.8

Q ss_pred             CCceeCCeeCCCCCCceEEEEEec--CeeeeeeEEEeCCEEEeccccccc------------------------------
Q psy8662          84 KTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVHQ------------------------------  131 (260)
Q Consensus        84 ~~ri~gG~~a~~~~~Pw~v~l~~~--~~~~C~GtLIs~~~VLTAAhCv~~------------------------------  131 (260)
                      ..||+||.+|..++|||||+|+.+  +.++|+||||+++||||||||+..                              
T Consensus        28 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~~V~~G~~~~~~~~~~~~~  107 (289)
T 2bdy_A           28 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEK  107 (289)
T ss_dssp             ---CBSCEECCTTSCTTEEEEEETTTTEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCE
T ss_pred             CCeEECCEECCCCCCCCeEEEEECCCCCEEEEEEEecCCEEEEcHHhcccCccccccCcccEEEEEccccccccCCCcce
Confidence            568999999999999999999764  478999999999999999999831                              


Q ss_pred             -----------C--------CCcee------------------eccCc----ccCCceEEEEeeeecCCCC-----CC-C
Q psy8662         132 -----------G--------LGIWV------------------TIRGK----SFSNKTGIVTGWGVQKQGG-----ST-S  164 (260)
Q Consensus       132 -----------~--------~~i~l------------------~~~~~----~~~~~~~~v~Gwg~~~~~~-----~~-~  164 (260)
                                 +        +||.|                  |....    ...+..++++|||.+....     .. +
T Consensus       108 ~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~g~~~~v~GWG~~~~~~~~~~~~~~~  187 (289)
T 2bdy_A          108 ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP  187 (289)
T ss_dssp             EEEEEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESSCSSCC-------CCC
T ss_pred             eeeeEEEEECCCCCCCCCCCCeEEEEEECCccccCCcccccCCCCccccccccCCCCEEEEECCCcCCCccccCcccccc
Confidence                       1        12222                  11110    1246789999999876431     12 5


Q ss_pred             ccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCC---CCCCCCcCCCCCceEEee--CCeeEEEEEEeeCCCCCCCCC
Q psy8662         165 DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPK---GEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENY  239 (260)
Q Consensus       165 ~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~---~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~~~~  239 (260)
                      ..|+++.+++++.++|+..+ ...++++||||+...   ...++|+|||||||++..  +++|+|+||+|||.+|+..+.
T Consensus       188 ~~L~~~~v~i~~~~~C~~~~-~~~i~~~~iCag~~~~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~  266 (289)
T 2bdy_A          188 SVLQVVNLPIVERPVCKDST-RIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGK  266 (289)
T ss_dssp             SBCEEEEEEBCCHHHHHHTC-SSCCCTTEEEECCCGGGCCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTC
T ss_pred             ccceEEEEEEECHHHhhccc-cCcCCCCEEeccCCCCCCCCCccCCCCCccceEEEECCCCCEEEEEEEEECCCCCCCCC
Confidence            78999999999999998853 456889999998542   257899999999999987  789999999999999998889


Q ss_pred             CcEEEechhhHHHHHHHhhc
Q psy8662         240 PGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       240 p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |+|||||++|++||+++|+.
T Consensus       267 p~vyt~V~~y~~WI~~~i~~  286 (289)
T 2bdy_A          267 YGFYTHVFRLKKWIQKVIDQ  286 (289)
T ss_dssp             CEEEEETGGGHHHHHHHHHC
T ss_pred             CEEEEEHHHHHHHHHHHHHh
Confidence            99999999999999999874

>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ...

Probab=100.00  E-value=2e-41  Score=290.28  Aligned_cols=172  Identities=41%  Similarity=0.785  Sum_probs=144.6

Q ss_pred             eeCCeeCCCCCCceEEEEEe-cCeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~-~~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||.++..++|||+|+|.. .+.++|+||||+++||||||||+..                                  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y   80 (241)
T 2jkh_A            1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF   80 (241)
T ss_dssp             CBSSEECCTTSSTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSCSSCEEEESCSBTTCCCSCCEEECEEEEEECTTC
T ss_pred             CCCCEECCCCCcCcEEEEEcCCCCcEEEEEEeeCCEEEEcHHHcCCCCcEEEEECCccCCCCCCCcEEEEeEEEEeCCCC
Confidence            68999999999999999985 4578999999999999999999853                                  


Q ss_pred             -----CCCcee------------------eccC----cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhh
Q psy8662         132 -----GLGIWV------------------TIRG----KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       132 -----~~~i~l------------------~~~~----~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                           .+||.|                  |...    ....+..++++|||.+...+..+..|+++.+++++.++|+.. 
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~-  159 (241)
T 2jkh_A           81 TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGEQSTRLKMLEVPYVDRNSCKLS-  159 (241)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHHH-
T ss_pred             CCCCCCCcEEEEEECCcccCCCCEeeeEcCCCCcccccccCCCeEEEEecCCCCCCCCcCccccEeeeccccHHHhccc-
Confidence                 122332                  1111    012467899999998876666678899999999999999875 


Q ss_pred             cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         185 YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       185 ~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +...++++|||++......+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||+.|++||+++++.
T Consensus       160 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  234 (241)
T 2jkh_A          160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMKT  234 (241)
T ss_dssp             CSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC-
T ss_pred             ccCcCCCCeEEeeCCCCCCccCcCcCCCeeEEEECCEEEEEEEEEECCCCCCCCCceEEEEhHHHHHHHHHHhcc
Confidence            445688999999876566899999999999999889999999999999998878899999999999999999874

>1aut_C Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 3f6u_H*

Probab=100.00  E-value=2.5e-41  Score=291.40  Aligned_cols=172  Identities=37%  Similarity=0.740  Sum_probs=142.6

Q ss_pred             eeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.. +.++|+||||+++||||||||+..                                  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLI~~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y   80 (250)
T 1aut_C            1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNY   80 (250)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSSCSCCEEEESCCBTTCCCTTCEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCCCCEEEEecCCCceEEEEEEeeCCEEEEChHHcCCCCceEEEEcccccCCCCCccEEEEEEEEEECCCC
Confidence            689999999999999999874 568999999999999999999853                                  


Q ss_pred             -----CCCcee------------------eccC-----cccCCceEEEEeeeecCCCCCCC-----ccceEEEEEeeChh
Q psy8662         132 -----GLGIWV------------------TIRG-----KSFSNKTGIVTGWGVQKQGGSTS-----DTLLEVEVPILSNA  178 (260)
Q Consensus       132 -----~~~i~l------------------~~~~-----~~~~~~~~~v~Gwg~~~~~~~~~-----~~l~~~~v~vi~~~  178 (260)
                           .+||.|                  +...     ....+..++++|||.+.......     ..|+++.+++++.+
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~L~~~~~~i~~~~  160 (250)
T 1aut_C           81 SKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHN  160 (250)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHH
T ss_pred             CCCCCCCcEEEEEECCcccCCCceeeeEcCCCccccccccCCCCEEEEEEeCCCCCCCccccccccceeeEEEEEEecHH
Confidence                 122332                  1111     01357889999999876543322     47999999999999


Q ss_pred             hHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         179 ECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       179 ~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      +|+.. +...++++|||++...+..+.|+|||||||++..+++|+|+||+|||.+|+..+.|+|||||++|++||+++++
T Consensus       161 ~C~~~-~~~~~~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  239 (250)
T 1aut_C          161 ECSEV-MSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR  239 (250)
T ss_dssp             HHHHH-CSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred             HhhHH-hccCCCCCEEEeCCCCCCCCCCCCCCchheEEEECCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhh
Confidence            99885 45568899999987666689999999999999888999999999999999987889999999999999999987


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      +
T Consensus       240 ~  240 (250)
T 1aut_C          240 D  240 (250)
T ss_dssp             -
T ss_pred             c
Confidence            5

>1mza_A Pro-granzyme K; apoptosis, serine protease, S1 family, hydrolase; 2.23A {Homo sapiens} SCOP: b.47.1.2 PDB: 1mzd_A

Probab=100.00  E-value=2.4e-41  Score=289.55  Aligned_cols=170  Identities=40%  Similarity=0.703  Sum_probs=141.7

Q ss_pred             ceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          86 RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        86 ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      ||+||.++..++|||||+|...+.++|+||||+++||||||||+..                                  
T Consensus         2 rIvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h   81 (240)
T 1mza_A            2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPF   81 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred             ceECCEECCCCCCCeEEEEeeCCceEEEEEEecCCEEEECHHhCCCCCCCCCeEEEeCceecCCCCCceEEEEEEEEEeC
Confidence            7999999999999999999988899999999999999999999752                                  


Q ss_pred             --------CCCcee------------------eccCcccCCceEEEEeeeecCCCCC-CCccceEEEEEeeChhhHhhh-
Q psy8662         132 --------GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGGS-TSDTLLEVEVPILSNAECKKT-  183 (260)
Q Consensus       132 --------~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~~-~~~~l~~~~v~vi~~~~C~~~-  183 (260)
                              .+||.|                  +.......+..++++|||.+..++. .+..|+++.+++++.++|+.. 
T Consensus        82 p~y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~  161 (240)
T 1mza_A           82 SRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQS  161 (240)
T ss_dssp             CCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTT
T ss_pred             CCccCCCCCceEEEEEeCCCcccCCceeeeecCCcccCCCCCEEEEEeCCcCCCCCCCccccceEeEEEEeCHHHcCCcc
Confidence                    112222                  2212234578899999998876554 578899999999999999831 


Q ss_pred             hcCC--CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechh-hHHHHHHHhhc
Q psy8662         184 AYEN--RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNR-YLTWIKNNTID  259 (260)
Q Consensus       184 ~~~~--~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~-y~~WI~~~~~~  259 (260)
                      .+..  .++++|||++...+..+.|+|||||||++++    +|+||+|||.+|+..+.|++||+|++ |++||+++++.
T Consensus       162 ~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGGPL~~~~----~l~Gi~S~g~~C~~~~~p~vyt~v~~~y~~WI~~~~~~  236 (240)
T 1mza_A          162 YYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICKG----VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVP  236 (240)
T ss_dssp             TTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEETT----EEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTCC
T ss_pred             eeCCCCcCCCCeEeecCCCCCCccCCCCCCCeeEECC----EEEEEEEECCCCCCCCCCcEEEeChHHHHHHHHHhccC
Confidence            2322  5788999998766668999999999999953    79999999999998888999999998 99999999864

>2f9n_A Alpha I tryptase; serine proteinase, trypsin-like, difucosylation, hydrolase-hydrolase inhibitor complex; HET: AR7 NAG FUC; 1.60A {Homo sapiens} PDB: 2f9o_A* 2f9p_A* 1lto_A 2fpz_A* 2bm2_A* 2fs8_A* 2fs9_A* 2fww_A* 2fxr_A* 2gdd_A* 2za5_A* 3v7t_A* 4a6l_A* 1a0l_A* 2zec_A* 2zeb_A*

Probab=100.00  E-value=2.6e-41  Score=290.23  Aligned_cols=171  Identities=42%  Similarity=0.735  Sum_probs=140.9

Q ss_pred             eeCCeeCCCCCCceEEEEEec-C--eeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-K--RFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~--~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.+|..++|||||+|+.+ +  .++|+||||+++||||||||+..                                
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~v~~g~~~~~~~~~~~~v~~i~~H   80 (245)
T 2f9n_A            1 IVGGQEAPRSKWPWQVSLRVRDRYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLATLRVQLREQHLYYQDQLLPVSRIIVH   80 (245)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGCSSCCCGGGEEEECSCSBTTTTCCCBCEEEEEEC
T ss_pred             CCCCeECCCCCCCcEEEEEEcCCCcceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEEeCCcccccCceEEEEEEEEEC
Confidence            689999999999999999874 3  58999999999999999999842                                


Q ss_pred             --------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCC--CccceEEEEEeeChhhHhh
Q psy8662         132 --------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGST--SDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 --------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~--~~~l~~~~v~vi~~~~C~~  182 (260)
                              .+||.|                  +.... ...+..++++|||.+..++..  +..|+++.+++++.++|+.
T Consensus        81 p~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (245)
T 2f9n_A           81 PQFYIIQTGADIALLELEEPVNISSRVHTVMLPPASETFPPGMPCWVTGWGDVDNDEPLPPPFPLKQVKVPIMENHICDA  160 (245)
T ss_dssp             TTCCSSCCTTCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCCEEEEESCCSBTTBCCCTTCBCEEEECCEECHHHHHH
T ss_pred             CCccCCCCCCcEEEEEeCCCCcCCCCccccCCCCcccCCCCCCEEEEEEeCCCCCCCCCCccccceEEEEEEcCHHHhhh
Confidence                    112332                  22211 225778999999987755433  3479999999999999988


Q ss_pred             hhcC--------CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHH
Q psy8662         183 TAYE--------NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK  254 (260)
Q Consensus       183 ~~~~--------~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~  254 (260)
                      .+..        ..++++|||++.  .+.+.|+|||||||++..+++|+|+||+|||.+|+..+.|+|||||+.|++||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~Ca~~--~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~  238 (245)
T 2f9n_A          161 KYHLGAYTGDDVRIIRDDMLCAGN--SQRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIH  238 (245)
T ss_dssp             HHHTTCCSCTTSCCSCTTEEEECC--SSSBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHH
T ss_pred             hhcccccccccccccccccEeecC--CCCCcCCCCCCCceEEEECCEEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHH
Confidence            6432        247889999973  457899999999999998999999999999999988788999999999999999


Q ss_pred             HHhhc
Q psy8662         255 NNTID  259 (260)
Q Consensus       255 ~~~~~  259 (260)
                      +++++
T Consensus       239 ~~~~~  243 (245)
T 2f9n_A          239 HYVPK  243 (245)
T ss_dssp             HHSCC
T ss_pred             HHhhc
Confidence            99874

>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ...

Probab=100.00  E-value=2.6e-41  Score=289.69  Aligned_cols=173  Identities=35%  Similarity=0.721  Sum_probs=144.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecC-----eeeeeeEEEeCCEEEeccccccc------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCVHQ------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~-----~~~C~GtLIs~~~VLTAAhCv~~------------------------------  131 (260)
                      |+||+++..++|||+|+|+.+.     .++|+||||+++||||||||+..                              
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~g~~~~~~~~~~~~~~~v~~   80 (247)
T 3mhw_U            1 IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLISPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN   80 (247)
T ss_dssp             CBSSEECCGGGSTTEEEEEEECTTSCEEEEEEEEEEETTEEEECGGGTTTSCCGGGEEEEESCCBSSSCCTTCEEEEEEE
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCCccceEEEEEEEeCCEEEEcHHhCcCCCCCccEEEEeccccccCCCCCCEEEEEEE
Confidence            6899999999999999998642     68999999999999999999843                              


Q ss_pred             -----C---------CCceeecc-----------------------CcccCCceEEEEeeeecCCCCC-CCccceEEEEE
Q psy8662         132 -----G---------LGIWVTIR-----------------------GKSFSNKTGIVTGWGVQKQGGS-TSDTLLEVEVP  173 (260)
Q Consensus       132 -----~---------~~i~l~~~-----------------------~~~~~~~~~~v~Gwg~~~~~~~-~~~~l~~~~v~  173 (260)
                           +         +||.|...                       .....+..++++|||.+..... .+..|+++.++
T Consensus        81 i~~hp~y~~~~~~~~~DIALl~L~~~~~~~~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~  160 (247)
T 3mhw_U           81 LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTISLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK  160 (247)
T ss_dssp             EEECTTCEEC-CCEESCCEEEEEECTTSCCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEE
T ss_pred             EEECCCCCCCcCCCCCcEEEEEeCCccccccccCCcccccccCCCcCCCCCCCEEEEEecCCcCCCCcccchhheeeEEE
Confidence                 1         23333211                       1112367899999998765543 57889999999


Q ss_pred             eeChhhHhhhh-cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHH
Q psy8662         174 ILSNAECKKTA-YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTW  252 (260)
Q Consensus       174 vi~~~~C~~~~-~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~W  252 (260)
                      +++.++|+..+ +...++++|||++...+..+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||+.|++|
T Consensus       161 ~~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~l~Gi~S~g~~c~~~~~p~vyt~V~~~~~W  240 (247)
T 3mhw_U          161 LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW  240 (247)
T ss_dssp             EECHHHHTSTTTTGGGCCTTEEEEECTTSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGCHHH
T ss_pred             EEChHHhcCccccCCcCCCCeEecCCCCCCCccCCCCCCCeEEEEECCCEEEEEEEEECCCCCCCCCCeEEEEHHHHHHH
Confidence            99999998753 34468899999997776789999999999999999999999999999999988889999999999999


Q ss_pred             HHHHhhc
Q psy8662         253 IKNNTID  259 (260)
Q Consensus       253 I~~~~~~  259 (260)
                      |++++++
T Consensus       241 I~~~~~e  247 (247)
T 3mhw_U          241 IRSHTKE  247 (247)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhcC
Confidence            9999875

>1pyt_D TC, PCPA-TC, chymotrypsinogen C; ternary complex (zymogen), serine proteinase, C-terminal peptidase; 2.35A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=2e-41  Score=292.15  Aligned_cols=174  Identities=34%  Similarity=0.656  Sum_probs=144.1

Q ss_pred             CCceeCCeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc----------------------------
Q psy8662          84 KTRIVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ----------------------------  131 (260)
Q Consensus        84 ~~ri~gG~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~----------------------------  131 (260)
                      ..||+||.+|..++|||||+|.+.    ..++|+||||+++||||||||+..                            
T Consensus        11 ~~rIvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~   90 (251)
T 1pyt_D           11 SARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRVALGKNNLEVEDEAGSLYVGVDT   90 (251)
T ss_dssp             SSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTCCEEEEESCSBTTCSCCSSCEEEEEEE
T ss_pred             CCccCCCEECCCCCCCceEEEEEEcCCCcceEEEeEEecCCEEEECHHHhCCCceEEEEEcccccccCCCCCcEEEEEEE
Confidence            468999999999999999999752    358999999999999999999853                            


Q ss_pred             ------------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhH
Q psy8662         132 ------------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       132 ------------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C  180 (260)
                                  .+||.|                  +.... ...+..++++|||.+..++..+..|+++.+++++.++|
T Consensus        91 i~~Hp~y~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C  170 (251)
T 1pyt_D           91 IFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYATC  170 (251)
T ss_dssp             EEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHHHH
T ss_pred             EEECCCCCCCCCCCCEEEEEECCCcccCCCeeeeEcCCCcccCCCCCEEEEEecccCCCCCCcccchheeEeEeeCHHHc
Confidence                        112222                  22211 12467899999998876666677899999999999999


Q ss_pred             hhhhc-CCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         181 KKTAY-ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       181 ~~~~~-~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +..+. ...++++||||+. .+..+.|+|||||||++..+++|+|+||+|||.  .|+..+.|+|||||++|++||++++
T Consensus       171 ~~~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~~~~l~GI~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~  249 (251)
T 1pyt_D          171 SQRDWWGTTVKETMVCAGG-DGVISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQKL  249 (251)
T ss_dssp             TSTTTTTTTCCTTEEEECC-SCSSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHHHT
T ss_pred             chhhccCCCcCCCeEEecC-CCCCccCCCCCCCceEEEECCCEEEEEEEEECCCCCCCCCCCCeEEEEHHHHHHHHHHHh
Confidence            87542 4468899999985 445789999999999998889999999999996  7987778999999999999999988


Q ss_pred             h
Q psy8662         258 I  258 (260)
Q Consensus       258 ~  258 (260)
                      +
T Consensus       250 ~  250 (251)
T 1pyt_D          250 Q  250 (251)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1fiw_A Beta-acrosin heavy chain; anti-parallel beta-barrel, hydrolase; HET: NAG FUL BMA MAN PBZ; 2.10A {Ovis aries} SCOP: b.47.1.2 PDB: 1fiz_A*

Probab=100.00  E-value=3.6e-41  Score=296.88  Aligned_cols=173  Identities=39%  Similarity=0.735  Sum_probs=142.3

Q ss_pred             eeCCeeCCCCCCceEEEEEec------CeeeeeeEEEeCCEEEeccccccc-----------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVHQ-----------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~------~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------  131 (260)
                      |+||.+|..++|||||+|.+.      ..++|+||||+++||||||||+..                             
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~   80 (290)
T 1fiw_A            1 IIGGQDAAHGAWPWMVSLQIFTYHNNRRYHVCGGSLLNSQWLLTAAHCFRIKKKVTDWRLIFGAKEVEWGTNKPVKPPLQ   80 (290)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTTTEEEEEEEEEEEETTEEEECGGGGSSCCSGGGEEEEESCSBCCTTCCSCCCTTCE
T ss_pred             CCCCEECCCCCCCcEEEEEEeccCCCccceEEEEEEeeCCEEEECHHhCCCCCCCcceEEEecceEEeccCCCcCCCCce
Confidence            689999999999999999762      258999999999999999999842                             


Q ss_pred             ------------------CCCcee------------------eccCc--ccCCceEEEEeeeecCCCCC-CCccceEEEE
Q psy8662         132 ------------------GLGIWV------------------TIRGK--SFSNKTGIVTGWGVQKQGGS-TSDTLLEVEV  172 (260)
Q Consensus       132 ------------------~~~i~l------------------~~~~~--~~~~~~~~v~Gwg~~~~~~~-~~~~l~~~~v  172 (260)
                                        .+||.|                  +....  ...+..++++|||.+..++. .+..|+++.+
T Consensus        81 ~~~V~~i~~Hp~y~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~~~~~v~GWG~~~~~~~~~~~~L~~~~v  160 (290)
T 1fiw_A           81 ERYVEKIIIHEKYSASSEANDIALMKITPPVTCGHFIGPGCLPQFRAGPPRVPQTCWVAGWGFLQENARRTSPMLQEARV  160 (290)
T ss_dssp             EEEEEEEEECTTCBTTTTBTCCEEEEEESCCCCBTTBCCCBCCCTTCCSCCSSCEEEEEESCCSSTTCSSCCSBCEEEEE
T ss_pred             EEEEEEEEECCCCCCCCCCCCEEEEEECCccccCCccccccCCCccccCcCCCCeEEEEEeccCCCCCCCCCceeeEEEE
Confidence                              012222                  21111  12467899999998775443 4668999999


Q ss_pred             EeeChhhHhhhh-cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEee--CCeeEEEEEEeeCCCCCCCCCCcEEEechhh
Q psy8662         173 PILSNAECKKTA-YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRY  249 (260)
Q Consensus       173 ~vi~~~~C~~~~-~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y  249 (260)
                      ++++.++|+... +...++++||||+...+..+.|+|||||||++..  +++|+|+||+|||.+|+..+.|+|||||++|
T Consensus       161 ~i~~~~~C~~~~~~~~~i~~~~iCag~~~~~~~~C~GDSGGPLv~~~~~~~~~~l~GIvS~g~~C~~~~~p~vyt~V~~y  240 (290)
T 1fiw_A          161 DLIDLGLCNSTRWYNGRIRSTNVCAGYPEGKIDTCQGDSGGPLMCKDSAENSYVVVGITSWGVGCARAKRPGVYTSTWSY  240 (290)
T ss_dssp             EEECHHHHTSTTTTTTCCCTTEEEEECTTCSSBCCTTCTTCEEEEECSSSSCEEEEEEEEECSSSSBTTBCEEEEESGGG
T ss_pred             EEecHHHhccccccCCcCCCCEEEEecCCCCCeeCCCCCchheEEEECCCCCEEEEEEEEECCCCCCCCCCeEEEEHHHh
Confidence            999999998742 3456889999999766668999999999999986  6899999999999999987889999999999


Q ss_pred             HHHHHHHhhc
Q psy8662         250 LTWIKNNTID  259 (260)
Q Consensus       250 ~~WI~~~~~~  259 (260)
                      ++||+++++.
T Consensus       241 ~~WI~~~~~~  250 (290)
T 1fiw_A          241 LNWIASKIGS  250 (290)
T ss_dssp             HHHHHHHHCH
T ss_pred             HHHHHHHhCc
Confidence            9999999863

>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B

Probab=100.00  E-value=4.5e-41  Score=288.57  Aligned_cols=170  Identities=34%  Similarity=0.697  Sum_probs=143.9

Q ss_pred             eeCCeeCCCCCCceEEEEEe-cCeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~-~~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||+++..++|||+|+|.. .+.++|+||||+++||||||||+..                                  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~~~~~~~~   80 (251)
T 3gov_B            1 IFNGRPAQKGTTPWIAMLSHLNGQPFCGGSLLGSSWIVTAAHCLHQSLDPKDPTLRDSDLLSPSDFKIILGKHWRLRSDE   80 (251)
T ss_dssp             CBTCEECCTTSCTTEEEEEETTCCEEEEEEEETTTEEEECGGGGBCCCCTTSCCCCGGGBCCGGGEEEEESCCBSSSCCS
T ss_pred             CCCCEECCCCCcCeEEEEeccCCCeeEEEEEecCCEEEECHhhccccccccccccccccccccccEEEEecceeccCCCC
Confidence            68999999999999999987 6688999999999999999999842                                  


Q ss_pred             ---------------------CCCcee------------------eccCcccCCceEEEEeeeecCCCCCCCccceEEEE
Q psy8662         132 ---------------------GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEV  172 (260)
Q Consensus       132 ---------------------~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v  172 (260)
                                           .+||.|                  +.. ....+..++++|||.+..+ ..+..|+++.+
T Consensus        81 ~~~~~~v~~i~~hp~y~~~~~~~DIAll~L~~~~~~~~~v~picLp~~-~~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~  158 (251)
T 3gov_B           81 NEQHLGVKHTTLHPQYDPNTFENDVALVELLESPVLNAFVMPICLPEG-PQQEGAMVIVSGWGKQFLQ-RFPETLMEIEI  158 (251)
T ss_dssp             SCEEECEEEEEECTTCBTTTTBTCCEEEEESSCCCCSSSCCCCBCCSS-CCCTTCEEEEEECSCCTTS-CCCSBCEEEEE
T ss_pred             cceEeeeEEEEECCCCCCCCCCCCEEEEEeCCcccCCCceEEeECCCC-CCCCCCEEEEEcCCCCCCC-CCCccceEEee
Confidence                                 112322                  111 1235788999999987653 46788999999


Q ss_pred             EeeChhhHhhhhcC--CCCCCCeEEeecCCCCCCCCcCCCCCceEEe--eCCeeEEEEEEeeCCCCCCCCCCcEEEechh
Q psy8662         173 PILSNAECKKTAYE--NRITPNMLCAGYPKGEKDSCQGDSGGPLHYA--NETVHHIVGVVSWGEGCAQENYPGVYARVNR  248 (260)
Q Consensus       173 ~vi~~~~C~~~~~~--~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~--~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~  248 (260)
                      ++++.++|+..+..  ..++++|||++...+..+.|+|||||||++.  .+++|+|+||+|||.+|+..+.|++||+|++
T Consensus       159 ~~~~~~~C~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~  238 (251)
T 3gov_B          159 PIVDHSTCQKAYAPLKKKVTRDMICAGEKEGGKDACAGDSGGPMVTLNRERGQWYLVGTVSWGDDCGKKDRYGVYSYIHH  238 (251)
T ss_dssp             EEECHHHHHHHTTTTTCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCSSCCEEEEETTT
T ss_pred             EEECHHHhhhhhhhccCCCCCCcEEecCCCCCCccCCCCCCCeEEeeeCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHH
Confidence            99999999986532  4688999999877777899999999999997  4689999999999999998888999999999


Q ss_pred             hHHHHHHHhh
Q psy8662         249 YLTWIKNNTI  258 (260)
Q Consensus       249 y~~WI~~~~~  258 (260)
                      |++||+++|+
T Consensus       239 ~~~WI~~~~~  248 (251)
T 3gov_B          239 NKDWIQRVTG  248 (251)
T ss_dssp             THHHHHHHHC
T ss_pred             hHHHHHHHhc
Confidence            9999999986

>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A

Probab=100.00  E-value=2.4e-41  Score=286.40  Aligned_cols=169  Identities=37%  Similarity=0.697  Sum_probs=141.7

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc---------------------------------C-
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ---------------------------------G-  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~---------------------------------~-  132 (260)
                      |+||.+|..++|||||+|.    +.|+||||+++||||||||+..                                 + 
T Consensus         1 IvgG~~a~~~~~Pw~v~l~----~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~~v~~i~~hp~y   76 (224)
T 3beu_A            1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKVRSTKVLQAPGF   76 (224)
T ss_dssp             CBTCEECCTTTSTTEEEET----TTEEEEEEETTEEEECGGGSCSSEEBCCCEEEESCSBTTCTTCEEEEEEEEEECTTC
T ss_pred             CCCCeECCCCCCCEEEEEC----CceeEEEeeCCEEEEChhhcCCCCCcceEEEEeeEeecCCCCceEEEEEEEEeCCCc
Confidence            6899999999999999994    5699999999999999999853                                 1 


Q ss_pred             ------CCceeec-------------cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCe
Q psy8662         133 ------LGIWVTI-------------RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNM  193 (260)
Q Consensus       133 ------~~i~l~~-------------~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~  193 (260)
                            +||.|..             ....+.+..++++|||.+..++..+..|+++.+++++.++|+..+....+.+.|
T Consensus        77 ~~~~~~~DIALl~L~~~v~~~~i~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~~~~  156 (224)
T 3beu_A           77 TKETYGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSSSSFILVANEM  156 (224)
T ss_dssp             CCGGGSCCCEEEEESSCCCSCCCEECCSSTTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHCSSCCCGGGE
T ss_pred             CCCcCCCCEEEEEeCCCCCCCccccccccccCCCEEEEEecCccCCCCcccceeeEeeCcccCHHHhhhhcCCccCCCCe
Confidence                  1233211             111234568999999988766666788999999999999999865444678899


Q ss_pred             EEeecCCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         194 LCAGYPKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       194 ~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ||++......+.|+|||||||++.. +++|+|+||+|||.+|+..+.|++||||++|++||++++++
T Consensus       157 ~Ca~~~~~~~~~C~GDsGgPl~~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (224)
T 3beu_A          157 ICAGYDTKQEDTCQGDSGGPMFRKDNADEWVQVGIVSWGEGCARKGKYGVYTEVSTFASAIASAART  223 (224)
T ss_dssp             EEECCSSSSCBCCTTCTTCEEEEECTTSCEEEEEEEEEESSSSCTTCCEEEEEHHHHHHHHHHHHTT
T ss_pred             EEeccCCCCCcCCCCcCCCeeEEecCCCCEEEEEEeccCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            9998766668999999999999986 68999999999999999878899999999999999999874

>2b9l_A Prophenoloxidase activating factor; CLIP domain, easter, innate immunity, melanin, immune system binding complex; HET: NAG FUC; 2.00A {Holotrichia diomphalia}

Probab=100.00  E-value=2.4e-41  Score=309.93  Aligned_cols=184  Identities=30%  Similarity=0.687  Sum_probs=148.8

Q ss_pred             CCccCCCCC---CCceeCC-eeCCCCCCceEEEEEecC--------eeeeeeEEEeCCEEEeccccccc-----------
Q psy8662          75 PCTCGAVNK---KTRIVGG-QVTYVHQYPWMALLMYKK--------RFYCGATLINNLYVLTAAHCVHQ-----------  131 (260)
Q Consensus        75 ~~~cg~~~~---~~ri~gG-~~a~~~~~Pw~v~l~~~~--------~~~C~GtLIs~~~VLTAAhCv~~-----------  131 (260)
                      ...||..+.   ..||+|| .+|..++|||||+|+...        .++|+||||+++||||||||+..           
T Consensus       115 ~~~CG~~~~~~~~~rIvgG~~~a~~~e~PW~v~l~~~~~~~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~V~  194 (394)
T 2b9l_A          115 PSFCGIRNERGLDFKITGQTNEAEYGEFPWMVAVLKANVIPGSGEEQLVCGGSLIAPSVVLTGAHCVNSYQSNLDAIKIR  194 (394)
T ss_dssp             CCCTTBCCTTCSSCEEESCSSBCCTTSSTTEEEEEECC------CCSEEEEEEEEETTEEEECHHHHGGGTTCGGGEEEE
T ss_pred             CCCCCCCCCCCCCceeeCCccccCCCCCCcEEEEeeccccccccccceEeeEEEEeCCEEEeccceecCCCCCcccEEEE
Confidence            456876543   4599999 899999999999998642        58999999999999999999842           


Q ss_pred             ---------------------------C-------CCc------------------eeeccCcccCCceEEEEeeeecCC
Q psy8662         132 ---------------------------G-------LGI------------------WVTIRGKSFSNKTGIVTGWGVQKQ  159 (260)
Q Consensus       132 ---------------------------~-------~~i------------------~l~~~~~~~~~~~~~v~Gwg~~~~  159 (260)
                                                 +       +||                  +||.....+.+..++++|||.+..
T Consensus       195 ~G~~~~~~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~pv~~~~~v~PicLp~~~~~~~~~~~~v~GWG~t~~  274 (394)
T 2b9l_A          195 AGEWDTLTEKERLPYQERKIRQVIIHSNFNPKTVVNDVALLLLDRPLVQADNIGTICLPQQSQIFDSTECFASGWGKKEF  274 (394)
T ss_dssp             ESCCBTTCCCSSSCCEEEEEEEEEECTTCCTTTCTTCCEEEEESSCCBCCTTCCCCBCCCTTCCCCCSCEEEEECCTTTT
T ss_pred             eceeeccCCcCCCccEEEEEEEEEECCCCCCCccccceEEEEecCccccCCceeeeEcCCcccCccCCEEEEEeccCccC
Confidence                                       0       122                  223333334567899999998765


Q ss_pred             CC--CCCccceEEEEEeeChhhHhhhhcC------CCCCCCeEEeecCCCCCCCCcCCCCCceEEee---CCeeEEEEEE
Q psy8662         160 GG--STSDTLLEVEVPILSNAECKKTAYE------NRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN---ETVHHIVGVV  228 (260)
Q Consensus       160 ~~--~~~~~l~~~~v~vi~~~~C~~~~~~------~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~---~~~~~L~GI~  228 (260)
                      +.  ..+..|+++.+++++.++|+..+..      ..++++||||+... +.++|+|||||||++..   +++|+|+||+
T Consensus       275 ~~~~~~s~~L~~~~v~iv~~~~C~~~~~~~~~~~~~~i~~~~iCAg~~~-g~d~C~GDSGGPLv~~~~~~~~~~~lvGIv  353 (394)
T 2b9l_A          275 GSRHRYSNILKKIQLPTVDRDKCQADLRNTRLGLKFVLDQTFVCAGGEQ-GKDTCTGDGGSPLFCPDPRNPSRYMQMGIV  353 (394)
T ss_dssp             TCTTSSCCBCEEEEECEECHHHHHHHHHTTTTCTTCCCCTTEEEECCBS-SCSCCSSCTTCEEEEEETTEEEEEEEEEEE
T ss_pred             CCCCcccccceEEEEEEECHHHHHHHHhhcccccceecCCCEEEeeCCC-CCcCCCCCcchhhEEEEcCCCCeEEEEEEE
Confidence            32  3468899999999999999876432      24788999998643 47999999999999963   4789999999


Q ss_pred             eeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         229 SWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       229 S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |||.+|+..+.|+|||||++|++||+++|+.
T Consensus       354 S~G~~C~~~~~PgVYT~V~~y~~WI~~~i~~  384 (394)
T 2b9l_A          354 AWGIGCGDENVPGVYANVAHFRNWIDQEMQA  384 (394)
T ss_dssp             SCTTCCCBSSSCEEEEEGGGGHHHHHHHHHH
T ss_pred             EECCCCCCCCCCeEEEEHHHhHHHHHHHHHh
Confidence            9999999888999999999999999999874

>2zgc_A Granzyme M; serine protease, cytolysis, glycoprotein, hydrolase, secrete zymogen; 1.96A {Homo sapiens} PDB: 2zgh_A 2zks_A 2zgj_A

Probab=100.00  E-value=8.7e-41  Score=286.62  Aligned_cols=171  Identities=30%  Similarity=0.614  Sum_probs=143.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~Hp~y~~~   80 (240)
T 2zgc_A            1 IIGGREVIPHSRPYMASLQRNGSHLCGGVLVHPKWVLTAAHCLAQRMAQLRLVLGLHTLDSPGLTFHIKAAIQHPRYKPV   80 (240)
T ss_dssp             CBTCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGGCSCGGGEEEEESCSBSSSCCEEEEEEEEEECTTCBCT
T ss_pred             CCCCEECCCCCcCcEEEEEeCCCeEEEEEEEcCCEEEEcHHhcCCCCCCEEEEecccccCCCCeEEEEEEEEECCCCCCC
Confidence            689999999999999999988889999999999999999999853                                   


Q ss_pred             ---CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhh-hcCCC
Q psy8662         132 ---GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYENR  188 (260)
Q Consensus       132 ---~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~-~~~~~  188 (260)
                         .+||.|                  |.... ...+..++++|||.+..++..+..|+++.+++++.++|+.. .+...
T Consensus        81 ~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~  160 (240)
T 2zgc_A           81 PALENDLALLQLDGKVKPSRTIRPLALPSKRQVVAAGTRCSMAGWGLTHQGGRLSRVLRELDLQVLDTRMCNNSRFWNGS  160 (240)
T ss_dssp             TSCBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEECCBSSTTCCBCSBCEEEEEEECCHHHHTSTTTTTTC
T ss_pred             CCCcccEEEEEeCCcccCCCceeeeEcCCCCCCCCCCCEEEEEECCcccCCCCcCceeeeeeeeecCHHHhCCccccCCC
Confidence               112332                  22111 13578899999998876666678899999999999999873 24456


Q ss_pred             CCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         189 ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       189 i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ++++|||++......+.|+|||||||++..  .|+|+||+||| ..|+..+.|+|||||++|++||+++++.
T Consensus       161 ~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~--~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~  230 (240)
T 2zgc_A          161 LSPSMVCLAADSKDQAPCKGDSGGPLVCGK--GRVLAGVLSFSSRVCTDIFKPPVATAVAPYVSWIRKVTGR  230 (240)
T ss_dssp             CCTTEEEEECSSTTCBCCTTCTTCEEEETT--TTEEEEEECCCCSSTTCTTSCCEEEESGGGHHHHHHHHCC
T ss_pred             CCCceEeeccCCCCCccCCCCccCeeEECC--CCEEEEEEEECCCCCCCCCCCcEEEEHHHhHHHHHHHHhh
Confidence            788999998766568999999999999953  48999999999 6898878899999999999999999874

>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A*

Probab=100.00  E-value=1e-40  Score=286.79  Aligned_cols=172  Identities=35%  Similarity=0.757  Sum_probs=142.5

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.. .++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~-~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~hp   79 (248)
T 2r0l_A            1 IIGGSSSLPGSHPWLAAIYIG-DSFCAGSLVHTCWVVSAAHCFSHSPPRDSVSVVLGQHFFNRTTDVTQTFGIEKYIPYT   79 (248)
T ss_dssp             CBSCEECCTTSSTTEEEEEET-TEEEEEEEEETTEEEECGGGGTTCCCGGGEEEEESCCBTTCCCSSCEEECEEEEEECT
T ss_pred             CCCCccCCCCCCCeEEEEEcC-CceEEEEEEcCCEEEECHHHcCCCCCcCcEEEEEEeEEcCCCCCccEEEeeeEEEeCC
Confidence            689999999999999999875 68999999999999999999843                                   


Q ss_pred             --------CCCceeecc----------------------C-cccCCceEEEEeeeecCCCCC-CCccceEEEEEeeChhh
Q psy8662         132 --------GLGIWVTIR----------------------G-KSFSNKTGIVTGWGVQKQGGS-TSDTLLEVEVPILSNAE  179 (260)
Q Consensus       132 --------~~~i~l~~~----------------------~-~~~~~~~~~v~Gwg~~~~~~~-~~~~l~~~~v~vi~~~~  179 (260)
                              .+||.|...                      . ....+..++++|||.+..... .+..|+++.+++++.++
T Consensus        80 ~y~~~~~~~~DiALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~  159 (248)
T 2r0l_A           80 LYSVFNPSDHDLVLIRLKKKGDRCATRSQFVQPICLPEPGSTFPAGHKCQIAGWGHLDENVSGYSSSLREALVPLVADHK  159 (248)
T ss_dssp             TCCTTSTTTTCCEEEEECCSSSCSSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSSSCCSCCSBCEEEEEEBCCHHH
T ss_pred             ccCcCCCCCCCEEEEEeCCcccccccCCCcEEEEECCCCCCCCCCCCEEEEEEccccCCCCCCCCchheEEEEeeeCHHH
Confidence                    112332111                      0 112467899999998765443 46789999999999999


Q ss_pred             Hhhhh-cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         180 CKKTA-YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       180 C~~~~-~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      |+... +...++++|||++...+..+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||+.|++||+++++
T Consensus       160 C~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~g~~~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~  239 (248)
T 2r0l_A          160 CSSPEVYGADISPNMLCAGYFDCKSDACQGDSGGPLACEKNGVAYLYGIISWGDGCGRLHKPGVYTRVANYVDWINDRIR  239 (248)
T ss_dssp             HTSTTTTGGGCCTTEEEESCSSSCCBCCTTCTTCEEEEEETTEEEEEEEEEECSTTTCTTCCEEEEEGGGGHHHHHHHHC
T ss_pred             hCCccccCCcCCCCEEeECCCCCCCcCCCCccCCeEEEEECCcEEEEEEEEeCCCCCCCCCCcEEEEHHHHHHHHHHHhc
Confidence            98742 33457899999987666689999999999999989999999999999999887889999999999999999987


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      .
T Consensus       240 ~  240 (248)
T 2r0l_A          240 P  240 (248)
T ss_dssp             -
T ss_pred             C
Confidence            4

>2bdg_A Kallikrein-4; serine proteinase, S1 subsite, 70-80 loop, structural proteo europe, spine, structural genomics, hydrolase; HET: PBZ; 1.95A {Homo sapiens} PDB: 2bdh_A* 2bdi_A*

Probab=100.00  E-value=1.1e-40  Score=282.79  Aligned_cols=166  Identities=33%  Similarity=0.705  Sum_probs=139.3

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||||+|+..+.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~v~~g~~~~~~~~~~~~~~~~v~~~~~Hp~y~~   80 (223)
T 2bdg_A            1 IINGEDCSPHSQPWQAALVMENELFCSGVLVHPQWVLSAAHCFQNSYTIGLGLHSLEADQEPGSQMVEASLSVRHPEYNR   80 (223)
T ss_dssp             CBTCEECCTTSSTTEEEEECSSCEEEEEEEEETTEEEECGGGCCSSEEEEESCSBSCGGGCTTCEEEEEEEEEECTTTTS
T ss_pred             CCCCEECCCCCCCcEEEEeeCCCEEEEEEEecCCEEEEhHHhCCCCeEEEEeeeecCCCCCCCcEEEEEEEEEeCCCCCC
Confidence            689999999999999999988889999999999999999999853                                   


Q ss_pred             ---CCCceeecc-----------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCC
Q psy8662         132 ---GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP  191 (260)
Q Consensus       132 ---~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~  191 (260)
                         .+||.|...                 .....+..++++|||.+..+ ..+..|+++.+++++.++|++. +...+.+
T Consensus        81 ~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~-~~~~~L~~~~~~~~~~~~C~~~-~~~~~~~  158 (223)
T 2bdg_A           81 PLLANDLMLIKLDESVSESDTIRSISIASQCPTAGNSCLVSGWGLLANG-RMPTVLQCVNVSVVSEEVCSKL-YDPLYHP  158 (223)
T ss_dssp             STTCSCCEEEEESSCCCCCSSCCCCCBCSSCCCTTCEEEEEESCCCTTS-CCCSBCEEEEEEBCCHHHHHHH-STTTCCT
T ss_pred             CCCcCcEEEEEECCcccCCCceecccCCCCCCCCCCEEEEEeCcccCCC-CCCCcceEEEEEEeCHHHhhhh-hCCCCCC
Confidence               122333110                 11235678999999987654 5567899999999999999985 4456789


Q ss_pred             CeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       192 ~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .|||++......+.|+|||||||+++.    +|+||+|||. .|+..+.|++||||++|++||+++++
T Consensus       159 ~~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  222 (223)
T 2bdg_A          159 SMFCAGGGQDQKDSCNGDSGGPLICNG----YLQGLVSFGKAPCGQVGVPGVYTNLCKFTEWIEKTVQ  222 (223)
T ss_dssp             TEEEECCSTTCCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEECGGGTHHHHHHHHH
T ss_pred             CeEeccCCCCCCCcCCCCCCchheEcc----EEEEEEEecCCCCCCCCCCcEEEEHHHhHHHHHHHhc
Confidence            999998755668999999999999964    7999999997 79887889999999999999999986

>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H*

Probab=100.00  E-value=7.1e-41  Score=285.87  Aligned_cols=170  Identities=35%  Similarity=0.693  Sum_probs=142.8

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||||+|+  +.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~--~~~~CgGtLI~~~~VLTAAhC~~~~~~~~~~~~v~~g~~~~~~~~~~~~~v~~i~~hp~   78 (242)
T 3tvj_B            1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEG   78 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEE--SSEEEEEEEETTTEEEECHHHHSTTTTCSSCCEEEESCSBTTCSCCEEEEEEEEEECTT
T ss_pred             CcCCeeCCCCCCCCEEEEe--cCCcEEEEEecCCEEEECHHHCCCCCCCcceEEEEeccccccCcccceeeEEEEEeCCC
Confidence            6899999999999999998  578999999999999999999842                                   


Q ss_pred             -------CCCcee------------------eccCc---ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhh
Q psy8662         132 -------GLGIWV------------------TIRGK---SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT  183 (260)
Q Consensus       132 -------~~~i~l------------------~~~~~---~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~  183 (260)
                             .+||.|                  |....   ...+..++++|||.+.. +..+..|+++.+++++.++|+..
T Consensus        79 y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~GwG~~~~-~~~~~~l~~~~~~i~~~~~C~~~  157 (242)
T 3tvj_B           79 YTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQR-GFLARNLMYVDIPIVDHQKCTAA  157 (242)
T ss_dssp             CCTTSCSTTCCEEEEESSCCCCBTTBCCCBCCCTTGGGGSCTTCEEEEEESCCCTT-SSCCSBCEEEEEEBCCHHHHHHH
T ss_pred             CCCCCCCcCcEEEEEECCccccCCCEecCCcCCCcccccccCCCEEEEEEeCCCCC-CCcCccceEEeeeEEcHHHHHHh
Confidence                   112332                  22221   23577899999998764 45678899999999999999886


Q ss_pred             hcCC-----CCCCCeEEeecCCCCCCCCcCCCCCceEEee--CCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHH
Q psy8662         184 AYEN-----RITPNMLCAGYPKGEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       184 ~~~~-----~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      +...     .++++|||++...+..+.|+|||||||++.+  +++|+|+||+||| .+|+..+.|++||||++|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~  237 (242)
T 3tvj_B          158 YEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN  237 (242)
T ss_dssp             HHSTTSCTTCCCTTEEEESCTTCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEEEESSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hccCCcccccccCCeEEECCCCCCCccccCCCCCeEEEEeCCCCcEEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHH
Confidence            5332     5889999998776678999999999999974  5899999999999 799988889999999999999999


Q ss_pred             Hhhc
Q psy8662         256 NTID  259 (260)
Q Consensus       256 ~~~~  259 (260)
                      ++++
T Consensus       238 ~i~~  241 (242)
T 3tvj_B          238 IISD  241 (242)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            9875

>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens}

Probab=100.00  E-value=1e-40  Score=284.92  Aligned_cols=168  Identities=25%  Similarity=0.533  Sum_probs=139.3

Q ss_pred             eeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||.   +++|||||+|+.+ +.++|+||||+++||||||||+..                                  
T Consensus         1 IvgG~---~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i   77 (234)
T 2asu_B            1 VVGGH---PGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKM   77 (234)
T ss_dssp             CBSCE---ECCCTTEEEEECTTSCEEEEEEEEETTEEEEEGGGSSCTTCCCTTCEEEESCSBSSCCTTCTTCEEEEEEEE
T ss_pred             CCCcc---cCCCcceEEeeccCCCEEEEEEEEeCCEEEECHHHcCCCCCCcccEEEEEeeeeccCCCCCCceEEEEEEEE
Confidence            67888   5789999999876 679999999999999999999842                                  


Q ss_pred             -----CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+||.|                  |.... ...+..++++|||.+.... .+..|+++.+++++.++|+..+ ..
T Consensus        78 ~~hp~~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~~C~~~~-~~  155 (234)
T 2asu_B           78 VCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTG-NDTVLNVALLNVISNQECNIKH-RG  155 (234)
T ss_dssp             EECSTTCCEEEEEESSCCCCSSSSCCCBCCCTTCCCCTTCEEEEEESSCCTTSS-CTTBCEEEEEEEECHHHHHHHT-TT
T ss_pred             ecCCCCCCeEEEEeCCcCcCCCcEeccCCCCccccCCCCCEEEEEeCCccCCCC-CCccceEEEeeEEcHHHccccc-CC
Confidence                 012222                  22111 2256789999999876543 4678999999999999998864 55


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+.++|||++...+..+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||++|++||+++++.
T Consensus       156 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~~~~  227 (234)
T 2asu_B          156 RVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRL  227 (234)
T ss_dssp             CCCTTEEEECCCSSCCBCCTTCTTCEEEEEETTEEEEEEEECCCSSSSCTTCCEEEEEGGGSHHHHHHHC--
T ss_pred             ccCcceEeecCCCCCCeeccCCCCCceEEEECCeEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHhhc
Confidence            688999999876666899999999999999999999999999999999878899999999999999999874

>1gvk_B Elastase 1, peptide inhibitor; hydrolase, serine protease, catalytic intermediate, atomic resolution, hydrolase-hydrolase inhibitor complex; 0.94A {Sus scrofa} SCOP: b.47.1.2 PDB: 1bma_A* 1b0e_A* 1e34_B* 1e35_B* 1e36_B* 1e37_B* 1e38_B* 1eas_A* 1eat_A* 1eau_A* 1ela_A* 1elb_A* 1elc_A* 1eld_E* 1ele_E* 1elf_A* 1elg_A* 1esa_A 1esb_A* 1est_A* ...

Probab=100.00  E-value=1e-40  Score=285.89  Aligned_cols=172  Identities=35%  Similarity=0.686  Sum_probs=142.7

Q ss_pred             eeCCeeCCCCCCceEEEEEec-C---eeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-K---RFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~---~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||.+|..++|||||+|... +   .++|+||||+++||||||||+..                               
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~H   80 (240)
T 1gvk_B            1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNNGTEQYVGVQKIVVH   80 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSCCCEEEEESCSBTTSCCSCCEEEEEEEEEEC
T ss_pred             CCCCeECCCCCcCEEEEEEecCCCccCceEEEEEeeCCEEEECHHHCCCCcceEEEECCeecccCCCcceEEEEEEEEEC
Confidence            689999999999999999863 3   58999999999999999999853                               


Q ss_pred             ----------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                .+||.|                  |.... ...+..++++|||.+..++..+..|+++.+++++.++|+.
T Consensus        81 p~y~~~~~~~~~DIALl~L~~~v~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (240)
T 1gvk_B           81 PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS  160 (240)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTS
T ss_pred             CCCCCCCCCCCCcEEEEEECCccccCCCccceecCCCCCCCCCCCEEEEEecCcCCCCCCcchhccEEEEEEEcHHHhcc
Confidence                      113332                  21111 1246789999999887666667889999999999999987


Q ss_pred             hh-cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         183 TA-YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       183 ~~-~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+ +...++++|||++. .+..+.|+|||||||++..+++|+|+||+||+.  +|+..+.|+|||||++|++||++++++
T Consensus       161 ~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  239 (240)
T 1gvk_B          161 SSYWGSTVKNSMVCAGG-DGVRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIAS  239 (240)
T ss_dssp             TTTTGGGCCTTEEEECC-SSSCBCCTTCTTCEEEEEETTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             ccccCccCCcceEeecC-CCCCcccCCCCcCceEEEECCcEEEEEEEEEeCCCCCCCCCCCcEEEeHHHHHHHHHHHHhc
Confidence            52 33357899999984 445789999999999998889999999999995  798778899999999999999999874

>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A

Probab=100.00  E-value=1.2e-40  Score=285.32  Aligned_cols=171  Identities=30%  Similarity=0.584  Sum_probs=141.5

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++.. +|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~-~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~~~~~   79 (240)
T 1si5_H            1 VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYG   79 (240)
T ss_dssp             CBSCEECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEEC
T ss_pred             CCCCeeCCC-CCCeEEEEEeCCCeEEEEEEeeCCEEEEhHHhcCCCCCccEEEEEeeeecCCCCCCCcceEEEEEEEEcC
Confidence            689999999 99999999998889999999999999999999853                                   


Q ss_pred             --CCCcee------------------eccC-cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC-CC
Q psy8662         132 --GLGIWV------------------TIRG-KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RI  189 (260)
Q Consensus       132 --~~~i~l------------------~~~~-~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~-~i  189 (260)
                        .+||.|                  +... ....+..++++|||.+.... .+..|+++.+++++.++|+..+... .+
T Consensus        80 p~~~DiALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~-~~~~L~~~~~~~~~~~~C~~~~~~~~~~  158 (240)
T 1si5_H           80 PEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLIN-YDGLLRVAHLYIMGNEKCSQHHRGKVTL  158 (240)
T ss_dssp             SSTTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCCSS-CCCBCEEEEEEEECGGGTCC-------C
T ss_pred             CCCCcEEEEEECCccccCCceeccCcCCcCCCCCCCCEEEEEEeCCCCCCC-CCCeeEEEEEeecCHHHhhhhhcCCccC
Confidence              112222                  2211 12256789999999876543 4678999999999999998764222 37


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+.|||++...+..+.|+|||||||++..+++|+|+||+|||.+|+..+.|++||||+.|++||+++++.
T Consensus       159 ~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~i~~  228 (240)
T 1si5_H          159 NESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILT  228 (240)
T ss_dssp             CTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSS
T ss_pred             CCCEEeecCCCCCCEeccCCCCCcEEEEECCcEEEEEEEEECCCCCCCCCCcEEEEHHHHHHHHHHHHhc
Confidence            8899999876666899999999999999999999999999999998878899999999999999999875

>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.8e-40  Score=283.72  Aligned_cols=168  Identities=39%  Similarity=0.715  Sum_probs=140.5

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------------CC---
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------------GL---  133 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------~~---  133 (260)
                      |+||.+|..++|||||+|+..+.++|+||||+++||||||||+..                              +|   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~   80 (238)
T 1spj_A            1 IVGGWECEQHSQPWQAALYHFSTFQCGGILVHRQWVLTAAHCISDNYQLWLGRHNLFDDENTAQFVHVSESFPHPGFNMS   80 (238)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSEEEEESCSBTTSCCTTCEEECEEEEEECTTSCGG
T ss_pred             CCCCEECCCCCCCcEEEEEeCCCeeEEEEEecCCEEEEcHHhCCCCceEEEEeccccCCCCCceEEEEEEEEcCCCcccc
Confidence            689999999999999999988889999999999999999999842                              11   


Q ss_pred             ---------------CceeeccC------------------cccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhh
Q psy8662         134 ---------------GIWVTIRG------------------KSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAE  179 (260)
Q Consensus       134 ---------------~i~l~~~~------------------~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~  179 (260)
                                     ||.|....                  ....+..++++|||.+...+ ..+..|+++.+++++.++
T Consensus        81 ~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~  160 (238)
T 1spj_A           81 LLENHTRQADEDYSHDLMLLRLTEPADTITDAVKVVELPTEEPEVGSTCLASGWGSIEPENFSFPDDLQCVDLKILPNDE  160 (238)
T ss_dssp             GGCC--CTTTCCCTTCCEEEEESSCCCCSSTTCCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHH
T ss_pred             ccccccccccccCCCCeEEEEECccccccCCceeeccCCCCCCCCCCEEEEEecCCCCCCCCCCcCcccEEEEeecCHHH
Confidence                           33331110                  11246789999999876543 456889999999999999


Q ss_pred             HhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         180 CKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       180 C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      |+.. +...+++.|||++......+.|+|||||||+++.    +|+||+||| .+|+..+.|++||||++|++||+++|+
T Consensus       161 C~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~  235 (238)
T 1spj_A          161 CKKA-HVQKVTDFMLCVGHLEGGKDTCVGDSGGPLMCDG----VLQGVTSWGYVPCGTPNKPSVAVRVLSYVKWIEDTIA  235 (238)
T ss_dssp             HHHH-CSSCCCTTEEEEECTTCSSBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHH
T ss_pred             hhhh-ccCCCCCCeEEeeCCCCCCCCCCCCCCCcEEEcC----EEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHHHhh
Confidence            9886 4456789999998766668999999999999953    899999999 689887889999999999999999987


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      +
T Consensus       236 ~  236 (238)
T 1spj_A          236 E  236 (238)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2

Probab=100.00  E-value=1.2e-40  Score=285.60  Aligned_cols=172  Identities=35%  Similarity=0.724  Sum_probs=142.6

Q ss_pred             eeCCeeCCCCCCceEEEEEec--C--eeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK--K--RFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~--~--~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||.+|..++|||||+|+..  +  .++|+||||+++||||||||+..                               
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~H   80 (241)
T 1bru_P            1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVH   80 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred             CCCCeECCCCCcCcEEEEEEecCCceeeEEEeEEeeCCEEEEcHHhcccCCceEEEEEcccccCCCCccEEEEEEEEEEC
Confidence            689999999999999999873  3  48999999999999999999852                               


Q ss_pred             --------C--CCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 --------G--LGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 --------~--~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                              .  +||.|                  |.... ...+..++++|||.+...+..+..|+++.+++++.++|+.
T Consensus        81 p~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~  160 (241)
T 1bru_P           81 QDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSK  160 (241)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTS
T ss_pred             CCCCCCCCCCCCcEEEEEeCCCcccCCccCCcccCCCcCCCCCCCEEEEEEccccCCCCCCCccceeCEEEEecHHHhCc
Confidence                    1  34333                  21111 1246789999999887666667889999999999999987


Q ss_pred             hh-cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         183 TA-YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       183 ~~-~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .+ +...++++|||++. .+..+.|+|||||||++.. +++|+|+||+|||.  +|+..+.|+|||||++|++||+++|+
T Consensus       161 ~~~~~~~~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i~  239 (241)
T 1bru_P          161 PGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA  239 (241)
T ss_dssp             TTTTGGGCCTTEEEECC-SSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred             ccccCCcCCCceEeecC-CCCCccCCCCCCCcEEEECCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEHHHhHHHHHHHHh
Confidence            52 33457889999984 4457899999999999986 78999999999997  79877889999999999999999987


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      +
T Consensus       240 ~  240 (241)
T 1bru_P          240 N  240 (241)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A*

Probab=100.00  E-value=1.8e-40  Score=281.56  Aligned_cols=167  Identities=40%  Similarity=0.701  Sum_probs=139.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~   80 (223)
T 1lo6_A            1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAA   80 (223)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCTTCEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT
T ss_pred             CCCCEECCCCCCCCEEEEecCCCEEEEeEEecCCEEEECccCCCCCeEEEEcceecCCCCCCcEEEEEEEEEECCCCCCC
Confidence            689999999999999999988889999999999999999999853                                   


Q ss_pred             --CCCceeecc-----------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCC
Q psy8662         132 --GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN  192 (260)
Q Consensus       132 --~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~  192 (260)
                        .+||.|...                 .....+..++++|||.+. .+..+..|+++.+++++.++|+.. +...++++
T Consensus        81 ~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~~~~~~~C~~~-~~~~~~~~  158 (223)
T 1lo6_A           81 SHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTA-DGDFPDTIQCAYIHLVSREECEHA-YPGQITQN  158 (223)
T ss_dssp             TCTTCCEEEEESSCCCCBTTBCCCCBCCCTTCCCCEEEEEESSCCT-TSSCCSBCEEEEEEEECHHHHHHH-STTTCCTT
T ss_pred             CCcCeEEEEEECCcccCCCceeecccCCCCCCCCCEEEEEEECCCC-CCCcCceeeEEEEEEeCHHHhhhh-hCCCCCCC
Confidence              122332110                 112357889999999886 455678899999999999999886 44568899


Q ss_pred             eEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         193 MLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       193 ~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |||++......+.|+|||||||++++    +|+||+||| ..|+..+.|++||||++|++||+++|+.
T Consensus       159 ~~Ca~~~~~~~~~C~GDsGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 1lo6_A          159 MLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQA  222 (223)
T ss_dssp             EEEEECTTTCCBCCTTTTTCEEEETT----EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC-
T ss_pred             eEEeecCCCCCeeccccCCCcEEeCC----EEEEEEeeCCCCCCCCCCCcEEEEHHHHHHHHHHHhcc
Confidence            99998766668999999999999953    799999999 6898878899999999999999999864

>1m9u_A Earthworm fibrinolytic enzyme; hydrolase, serine protease (elastase-like); 2.30A {Eisenia fetida} SCOP: b.47.1.2

Probab=100.00  E-value=9.4e-41  Score=285.91  Aligned_cols=170  Identities=32%  Similarity=0.717  Sum_probs=142.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecC---eeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~---~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.+|..++|||+|+|+...   .++|+||||+++||||||||+..                                
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~~h   80 (241)
T 1m9u_A            1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSYTMH   80 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCSBTTCCTTCEEEEEEEEEEC
T ss_pred             CCCCeECCCCCcCeEEEEEecCCceeeeeEEEEEeCCEEEecHHhCCCCCcceEEEEEEeecCCCCCCceEEEEEEEEeC
Confidence            6899999999999999998753   48999999999999999999843                                


Q ss_pred             -CC---------Ccee------------------ecc-CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 -GL---------GIWV------------------TIR-GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 -~~---------~i~l------------------~~~-~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                       +|         ||.|                  +.. ...+.+..++++|||.+...+..+..|+++.+++++.++|+.
T Consensus        81 p~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (241)
T 1m9u_A           81 ENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTA  160 (241)
T ss_dssp             TTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHH
T ss_pred             CCcCCCCCcccccEEEEEecCccccCCCccccCcCCCcCCCCCCCEEEEEeCcccCCCCCcccceeEeeEEEEcHHHhhh
Confidence             23         2222                  222 223367899999999887666667889999999999999988


Q ss_pred             hhcC-CC--CCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEee----CCCCCCCCCCcEEEechhhHHHHHH
Q psy8662         183 TAYE-NR--ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW----GEGCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       183 ~~~~-~~--i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~----g~~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      .+.. ..  +.++|||++...+..+.|+|||||||++.. ++|+|+||+||    +.+|+..+.|++||||++|++||++
T Consensus       161 ~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-~~~~l~Gi~S~~~~~g~~C~~~~~p~vyt~V~~~~~WI~~  239 (241)
T 1m9u_A          161 AMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD  239 (241)
T ss_dssp             HHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHH
T ss_pred             hhcccCCCcccCCcEEECcCCCCCeeecCcCCccEEEeC-CCEEEEEEEEEeccCCCCccCCCCCEEEEEhHHhHhHHhh
Confidence            6543 23  789999998766668999999999999986 88999999999    4679877889999999999999999


Q ss_pred             Hh
Q psy8662         256 NT  257 (260)
Q Consensus       256 ~~  257 (260)
                      +|
T Consensus       240 ~~  241 (241)
T 1m9u_A          240 NS  241 (241)
T ss_dssp             HC
T ss_pred             hC
Confidence            75

>1fxy_A Coagulation factor XA-trypsin chimera; protease, chloromethylketone, hydrolase-hydrolase I complex; HET: 0G6; 2.15A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=1e-40  Score=283.83  Aligned_cols=167  Identities=44%  Similarity=0.894  Sum_probs=140.4

Q ss_pred             eeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||.++..++|||+|+|+.. +.++|+||||+++||||||||+..                                  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~Hp~y   80 (228)
T 1fxy_A            1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF   80 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTSCSSCEEEEECSCTTTCCCCEEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCcCcEEEEEcCCCCeeEEEEEeeCCEEEECHHHCCCCCcEEEEECccCccccCCCcEEEEEEEEEECCCC
Confidence            689999999999999999875 578999999999999999999842                                  


Q ss_pred             -----CCCcee------------------eccCcccCCceEEEEeeeecCCCCC-CCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGGS-TSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~~-~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+||.|                  +.. ....+..++++|||.+...+. .+..|+++.+++++.++|+.. +..
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~-~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~  158 (228)
T 1fxy_A           81 TKETYDFDIAVLRLKTPITFRMNVAPASLPTA-PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS-YPG  158 (228)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCCCCSS-CCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHH-STT
T ss_pred             CCCCCcCcEEEEEECCcccCCCceeccCCCCC-CCCCCCEEEEEecCccCCCCCCCCccceEEEEEEeCHHHhHhh-cCC
Confidence                 122332                  111 123578899999998865544 578899999999999999886 445


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .++++|||++......+.|+|||||||+++.    +|+||+|||.+|+..+.|++||||++|++||+++++.
T Consensus       159 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  226 (228)
T 1fxy_A          159 KITSNMFCVGFLEGGKDSCQGDSGGPVVCNG----QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAA  226 (228)
T ss_dssp             TCCTTEEEESCTTCSCBCCTTCTTCEEEETT----EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCCCEEEeccCCCCCccccCccccceEECC----EEEEEEEECCCCCCCCCCEEEEEhHHHHHHHHHHHhc
Confidence            6789999998766668999999999999953    7999999999998778899999999999999999874

>1rtf_B (TC)-T-PA, two chain tissue plasminogen activator; serine protease, fibrinolytic enzymes; HET: BEN; 2.30A {Homo sapiens} SCOP: b.47.1.2 PDB: 1a5h_A* 1bda_A* 1a5i_A*

Probab=100.00  E-value=1.4e-40  Score=286.46  Aligned_cols=172  Identities=36%  Similarity=0.705  Sum_probs=140.8

Q ss_pred             eeCCeeCCCCCCceEEEEEec------CeeeeeeEEEeCCEEEeccccccc-----------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK------KRFYCGATLINNLYVLTAAHCVHQ-----------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~------~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------  131 (260)
                      |+||.+|..++|||||+|+..      ..++|+||||+++||||||||+..                             
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~~~~~v~   80 (252)
T 1rtf_B            1 IKGGLFADIASHPWQAAIFAKHRRSPGERFLCGGILISSCWILSAAHCFQERFPPHHLTVILGRTYRVVPGEEEQKFEVE   80 (252)
T ss_dssp             CBSSEECCGGGSTTEEEEEEEC----CEEEEEEEEECSSSEEEECGGGGTTCCCGGGEEEEESCSBSSSCCTTCEEEEEE
T ss_pred             CCCCeECCCCCcCCEEEEEEecCCCCCCCEEEEEEEEeCCEEEECHHHCCCCCCcccEEEEeCcccccCCCCcceEEEEE
Confidence            689999999999999999853      368999999999999999999853                             


Q ss_pred             -------------CCCceeecc----------------------Cc-ccCCceEEEEeeeecCCCC-CCCccceEEEEEe
Q psy8662         132 -------------GLGIWVTIR----------------------GK-SFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPI  174 (260)
Q Consensus       132 -------------~~~i~l~~~----------------------~~-~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~v  174 (260)
                                   .+||.|...                      .. ...+..++++|||.+.... ..+..|+++.+++
T Consensus        81 ~i~~Hp~y~~~~~~~DIALl~L~~~~~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~  160 (252)
T 1rtf_B           81 KYIVHKEFDDDTYDNDIALLQLKSDSSRCAQESSVVRTVCLPPADLQLPDWTECELSGYGKHEALSPFYSERLKEAHVRL  160 (252)
T ss_dssp             EEEECTTCCTTTCTTCCEEEEECCSSSCCSCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSSTTCSSCCSBCEEEEEEE
T ss_pred             EEEeCCCCCcCCCCCCEEEEEECCccccccccCCceeceeCCCccccCCCCCEEEEEEcCCCCCCCccccchheEeeeEE
Confidence                         122333111                      11 1135789999999876543 3467899999999


Q ss_pred             eChhhHhhhhc-CCCCCCCeEEeecCCCC------CCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEech
Q psy8662         175 LSNAECKKTAY-ENRITPNMLCAGYPKGE------KDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVN  247 (260)
Q Consensus       175 i~~~~C~~~~~-~~~i~~~~~Ca~~~~~~------~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~  247 (260)
                      ++.++|+..+. ...+.++|||++.....      .+.|+|||||||++..+++|+|+||+|||.+|+..+.|+|||||+
T Consensus       161 ~~~~~C~~~~~~~~~~~~~~~Ca~~~~~~~~~~~~~~~C~GDsGgPL~~~~~~~~~l~Gi~S~g~~C~~~~~p~vyt~V~  240 (252)
T 1rtf_B          161 YPSSRCTSQHLLNRTVTDNMLCAGDTRSGGPQANLHDACQGDSGGPLVCLNDGRMTLVGIISWGLGCGQKDVPGVYTKVT  240 (252)
T ss_dssp             CCGGGSSTTTTTTCCCCTTEEEEECCC------CCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGG
T ss_pred             ecHHHhhhhhccCCCCCCCEEEecCCCCCCccCCCCccccCCCcCceEEEeCCcEEEEEEEEEcCCCCCCCCCeEEEEHH
Confidence            99999987542 34678999999865543      789999999999999899999999999999998878899999999


Q ss_pred             hhHHHHHHHhh
Q psy8662         248 RYLTWIKNNTI  258 (260)
Q Consensus       248 ~y~~WI~~~~~  258 (260)
                      .|++||+++|+
T Consensus       241 ~y~~WI~~~~~  251 (252)
T 1rtf_B          241 NYLDWIRDNMR  251 (252)
T ss_dssp             GGHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            99999999986

>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A

Probab=100.00  E-value=1.7e-40  Score=281.46  Aligned_cols=166  Identities=38%  Similarity=0.728  Sum_probs=139.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+ .+.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~~~~CgGsLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~   79 (222)
T 1hj8_A            1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSY   79 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCSSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTT
T ss_pred             CCCCEECCCCCCCEEEEEE-cCCcEEEeEEecCCEEEECHHhcCCCeEEEEcccccccCCCCcEEEEEEEEEECCCCCCC
Confidence            6899999999999999997 4678999999999999999999853                                   


Q ss_pred             --CCCcee------------------eccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCC
Q psy8662         132 --GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP  191 (260)
Q Consensus       132 --~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~  191 (260)
                        .+||.|                  +.. ....+..++++|||.+...+..+..|+++.+++++.++|+.. +...+.+
T Consensus        80 ~~~~DIALl~L~~~~~~~~~v~picL~~~-~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~-~~~~~~~  157 (222)
T 1hj8_A           80 NIDNDIMLIKLSKPATLNTYVQPVALPTS-CAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-YPGMITN  157 (222)
T ss_dssp             TTBSCCEEEEESSCCCCSSSCCCCBCCSS-CCCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHH-STTCCCT
T ss_pred             CCCCcEEEEEECCcccCCCceeccCCCCC-CCCCCCEEEEEECCCCCCCCCCCceeEEEEEEEcCHHHhhhh-ccCCCCC
Confidence              122332                  211 123578899999998876666678899999999999999886 4456789


Q ss_pred             CeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       192 ~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .|||++......+.|+|||||||++++    +|+||+|||.+|+..+.|++||||+.|++||+++|+.
T Consensus       158 ~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~C~~~~~p~vyt~v~~~~~WI~~~~~~  221 (222)
T 1hj8_A          158 AMFCAGYLEGGKDSCQGDSGGPVVCNG----ELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             TEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             CeEEeccCCCCCccCCCCcccceEECC----EEEEEEeecCCCCCCCcCcEEEEhHHhHHHHHHHhhc
Confidence            999998766668999999999999953    7999999999999878899999999999999999874

>1eq9_A Chymotrypsin; FIRE ANT, serine proteinase, hydrolase; HET: PMS; 1.70A {Solenopsis invicta} SCOP: b.47.1.2

Probab=100.00  E-value=1.1e-40  Score=282.58  Aligned_cols=165  Identities=33%  Similarity=0.688  Sum_probs=138.3

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~~~hp~y~   80 (222)
T 1eq9_A            1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKNYD   80 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCSBTTSCCEEEEEEEEEECTTCB
T ss_pred             CCCCEECCCCCcceEEEEEeCCCeEEEEEEeeCCEEEEhhhcCCCCCCCceEEEEECceecCCCCeEEEEEEEEECCCCC
Confidence            689999999999999999988889999999999999999999843                                   


Q ss_pred             ----CCCc------------------eeeccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCC
Q psy8662         132 ----GLGI------------------WVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRI  189 (260)
Q Consensus       132 ----~~~i------------------~l~~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i  189 (260)
                          .+||                  +|+.......+..++++|||.+..++..+..|+++.+++++.++|++..+.  +
T Consensus        81 ~~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~--~  158 (222)
T 1eq9_A           81 DFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQWR--V  158 (222)
T ss_dssp             TTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHSSS--C
T ss_pred             CCCCCCCEEEEEECCccccCCceEccCCCCCCcCCCCCEEEEEcccccCCCCcccchheEeEEEEeCHHHhCcccCC--C
Confidence                1122                  223322224677899999998876666678899999999999999843332  7


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+.|||++. ..+.+.|+|||||||++++    +|+||+|||.+|+. +.|++||||++|++||+++|++
T Consensus       159 ~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~C~~-~~p~vyt~V~~~~~WI~~~~~~  222 (222)
T 1eq9_A          159 IDSHICTLT-KRGEGACHGDSGGPLVANG----AQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             CTTEEEECC-CTTCBCCTTCTTCEEEETT----EEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSCC
T ss_pred             CccEEeecC-CCCCeeeeCCccceEEECC----EEEEEEEECCCcCC-CCCCEEEEHHHHHHHHHHHhhC
Confidence            889999976 3457899999999999953    89999999999987 6799999999999999999864

>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A*

Probab=100.00  E-value=1.2e-40  Score=282.59  Aligned_cols=168  Identities=40%  Similarity=0.770  Sum_probs=141.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-------------------------------C---
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-------------------------------G---  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------~---  132 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                               +   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y~~   80 (224)
T 1pq7_A            1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSG   80 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCSBSSSSSEEECEEEEEECTTCBT
T ss_pred             CCCCEECCCCCcCeEEEEEECCCeEEEEEEecCCEEEEcHHccCCCCCCceEEEeCcceecCCCEEEEEEEEEECCCCCC
Confidence            689999999999999999988889999999999999999999853                               1   


Q ss_pred             --CCcee------------------ec-cCcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCCCC
Q psy8662         133 --LGIWV------------------TI-RGKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRIT  190 (260)
Q Consensus       133 --~~i~l------------------~~-~~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~i~  190 (260)
                        +||.|                  +. ......+..++++|||.+...+ ..+..|+++.+++++.++|+..+....+.
T Consensus        81 ~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  160 (224)
T 1pq7_A           81 NNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAIT  160 (224)
T ss_dssp             TBTCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTTSC
T ss_pred             CCCCEEEEEeCCCCcCCCcccceecCCcccCCCCCCEEEEEecCCcCCCCCcccceeeEeEEEEEcHHHhhHhhcCCCCC
Confidence              23333                  21 1122457899999999887654 45678999999999999999865434678


Q ss_pred             CCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         191 PNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       191 ~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +.|||++......+.|+|||||||++.+ +  +|+||+|||.+|+..+.|++||||++|++||+++|
T Consensus       161 ~~~~Ca~~~~~~~~~C~GDSGgPL~~~~-g--~l~Gi~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i  224 (224)
T 1pq7_A          161 NQMFCAGVSSGGKDSCQGDSGGPIVDSS-N--TLIGAVSWGNGCARPNYSGVYASVGALRSFIDTYA  224 (224)
T ss_dssp             TTEEEECCTTCCCBCCTTCTTCEEECTT-C--CEEEEEEECSSSSCTTCCEEEEETTTSHHHHHHHC
T ss_pred             CCeEEeecCCCCCCCCcCCCCcceECcC-C--eEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHhhC
Confidence            9999998766668999999999999853 3  79999999999998888999999999999999875

>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A*

Probab=100.00  E-value=3e-40  Score=281.07  Aligned_cols=169  Identities=31%  Similarity=0.552  Sum_probs=142.2

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||+|+|+..+.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~~~   80 (234)
T 3s69_A            1 VIGGDECNINEHRSLVAFFNSTGFFCSGTLINEEWVLTAAHCDNTNFQMKLGVHSKKVLNEDEQTRNPKEKFICPNKKND   80 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEECSSCEEEEEEEEETTEEEECGGGCCSSCEEEESCCCSSSCCTTCEEECEEEEEECTTCCTT
T ss_pred             CCCCccCCCCCCceEEEEeeCCCeEEeEEEeeCCEEEEchhhCCCCceEEecccccccccCCcceeeceEEEECCCccCC
Confidence            689999999999999999988899999999999999999999743                                   


Q ss_pred             ---CCCceeecc-----------------CcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCCCC
Q psy8662         132 ---GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRIT  190 (260)
Q Consensus       132 ---~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~i~  190 (260)
                         .+||.|...                 .....+..++++|||.+.... ..+..|+++.+++++.++|+..+....+.
T Consensus        81 ~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~~  160 (234)
T 3s69_A           81 EVLDKDIMLIKLDSRVSNSEHIVPLSLPSSPPSVGSVCHIMGWGSITPIKVTYPDVPYCAYINLLDDAVCQAGYPELLTE  160 (234)
T ss_dssp             CTTSSCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTCCTT
T ss_pred             CCCcccEEEEeeCCcCCCCCcceeeecCCCCCCCCCEEEEEECCCCCCCCcCcccccceeEEeecCHHHHhhhcccccCC
Confidence               123333111                 112247889999999876543 55788999999999999999875556778


Q ss_pred             CCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         191 PNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       191 ~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+|||++...+..+.|+|||||||+++.    .|+||+|||.. |+..+.|++||||+.|++||++++++
T Consensus       161 ~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  226 (234)
T 3s69_A          161 YRTLCAGILEGGKDTCGGDSGGPLICNG----QFQGIVSFGAHPCGQGLKPGVYTKVFDYNHWIQSIIAG  226 (234)
T ss_dssp             SCEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             cceEeccCCCCCCccCCCCCccceEEcC----EEEEEEEEcccccCCCCCCcEEeeHHHHHHHHHHHhcC
Confidence            8999999777778999999999999954    59999999976 98878899999999999999999875

>2zch_P Prostate-specific antigen; human PSA, kallikrein related peptidases, antibodies, prostate cancer, glycoprotein, hydrolase, polymorphism; HET: NDG; 2.83A {Homo sapiens} PDB: 2zck_P* 2zcl_P* 3qum_P*

Probab=100.00  E-value=2e-40  Score=283.37  Aligned_cols=168  Identities=35%  Similarity=0.655  Sum_probs=140.6

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------------C----
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------------G----  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------~----  132 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                              +    
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~   80 (237)
T 2zch_P            1 IVGGWECEKHSQPWQVLVASRGRAVCGGVLVHPQWVLTAAHCIRNKSVILLGRHSLFHPEDTGQVFQVSHSFPHPLYDMS   80 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEESSSSEEEEEEEEETTEEEECGGGCCSSCEEEESCSBSSSCCTTCEEEEEEEEEECTTSCGG
T ss_pred             CCCCEECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEcHHhcCCCceEEEecccccCCCCCcEEEEEEEEecCCCcchh
Confidence            689999999999999999988889999999999999999999843                              1    


Q ss_pred             --------------CCceeecc-----------------CcccCCceEEEEeeeecCCCCC-CCccceEEEEEeeChhhH
Q psy8662         133 --------------LGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGGS-TSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       133 --------------~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~~-~~~~l~~~~v~vi~~~~C  180 (260)
                                    +||.|...                 .....+..++++|||.+...+. .+..|+++.+++++.++|
T Consensus        81 ~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~pi~Lp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C  160 (237)
T 2zch_P           81 LLKNRFLRPGDDSSHDLMLLRLSEPAELTDAVKVMDLPTQEPALGTTCYASGWGSIEPEEFLTPKKLQCVDLHVISNDVC  160 (237)
T ss_dssp             GGTSSSCCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCSSCCCTTCEEEEEESCCSSSSSCCCCSBCEEEEEEEECHHHH
T ss_pred             hhcccccccCCCCCcceEEEEeCCCCccCCcEeeeECCCCCCCCCCEEEEEeCCccCCCCCcCCcccEEeEEEEeCHHHh
Confidence                          13333111                 1123467899999998765543 367899999999999999


Q ss_pred             hhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       181 ~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +.. +...+++.|||++...+..+.|+|||||||+++.    +|+||+|||. +|+..+.|++||||++|++||+++++.
T Consensus       161 ~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  235 (237)
T 2zch_P          161 AQV-HPQKVTKFMLCAGRWTGGKSTCSGDSGGPLVCNG----VLQGITSWGSEPCALPERPSLYTKVVHYRKWIKDTIVA  235 (237)
T ss_dssp             HHH-CSSBCCTTEEEEECTTCSCBCCTTCTTCEEESSS----SEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             ccc-ccCCCCceEEeecCCCCCCcccCCCccCeEEECC----EEEEEEEeCcCCCCCCCCCcEEEEHHHHHHHHHHHHhc
Confidence            885 4456789999998766668999999999999853    7999999998 798878899999999999999999874

>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine protease, zymogen; HET: NAG; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.2e-40  Score=308.03  Aligned_cols=175  Identities=38%  Similarity=0.696  Sum_probs=142.6

Q ss_pred             CCceeCCeeCCCCCCceEEEEEec--CeeeeeeEEEeCCEEEeccccccc------------------------------
Q psy8662          84 KTRIVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVHQ------------------------------  131 (260)
Q Consensus        84 ~~ri~gG~~a~~~~~Pw~v~l~~~--~~~~C~GtLIs~~~VLTAAhCv~~------------------------------  131 (260)
                      ..||+||.+|..++|||||+|+.+  +.++|+||||+++||||||||+..                              
T Consensus       163 ~~RIvgG~~a~~g~~Pw~v~l~~~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~~V~lG~~~~~~~~~~~~~  242 (424)
T 3nxp_A          163 DGRIVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEK  242 (424)
T ss_dssp             SSCCCCCEECCTTSCTTEEEEEETTTTEEEEEEEESSSSEEEECHHHHEEGGGTEECCGGGEEEEESCCBSSSCCTTTCE
T ss_pred             CCeeECCEECCCCCCCCEEEEeecCCCCccceeEEEcCCEEEEhHHhcCccccccccCcccEEEEeCcccccccCCCcee
Confidence            569999999999999999999875  478999999999999999999830                              


Q ss_pred             -----------C--------CCceeeccCc----------------------ccCCceEEEEeeeecCC------CCCCC
Q psy8662         132 -----------G--------LGIWVTIRGK----------------------SFSNKTGIVTGWGVQKQ------GGSTS  164 (260)
Q Consensus       132 -----------~--------~~i~l~~~~~----------------------~~~~~~~~v~Gwg~~~~------~~~~~  164 (260)
                                 +        +||.|.....                      ...+..++++|||.+..      +...+
T Consensus       243 ~~~V~~ii~Hp~y~~~~~~~nDIALLkL~~pv~~s~~v~PicLp~~~~~~~~~~~g~~~~v~GWG~t~~~~~~~~~~~~~  322 (424)
T 3nxp_A          243 ISMLEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQP  322 (424)
T ss_dssp             EECEEEEEECTTCBTTTTSBTCCEEEEESSCCCCCSSCCCCBCCCHHHHHHHHHHCSEEEEEESSHHHHHHHHC----CC
T ss_pred             EEEEEEEEeCCCCCCCCCCcCCeEEEEecCccccCCcccccCCCCcccccccccCCCeEEEEecCCCCccCccccCCCCC
Confidence                       1        1233311110                      12367899999997542      12236


Q ss_pred             ccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCC---CCCCCCcCCCCCceEEee--CCeeEEEEEEeeCCCCCCCCC
Q psy8662         165 DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPK---GEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENY  239 (260)
Q Consensus       165 ~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~---~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~~~~  239 (260)
                      ..|+++.+++++.+.|+.. +...++++||||+...   ...++|+|||||||++..  +++|+|+||+|||.+|+..+.
T Consensus       323 ~~L~~~~v~ii~~~~C~~~-~~~~i~~~~iCAg~~~~~~~~~d~C~GDSGGPLv~~~~~~~~~~l~GIvS~G~~C~~~~~  401 (424)
T 3nxp_A          323 SVLQVVNLPIVERPVCKDS-TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGK  401 (424)
T ss_dssp             SBCEEEEEEBCCHHHHHHT-CSSCCCTTEEEESCCCBTTBCCCTTCSCTTCEEEEECTTTCCEEEEEEECCSSCTTTCCS
T ss_pred             ccceEEEeeEEcHHHhhhh-ccCcCCCCeEecccCCCCCCCCccCCCcCCCceEEEECCCCcEEEEEEEEeCCCCCCCCC
Confidence            7899999999999999986 4567899999998642   235899999999999986  789999999999999998889


Q ss_pred             CcEEEechhhHHHHHHHhhc
Q psy8662         240 PGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       240 p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |+|||||++|++||+++|+.
T Consensus       402 pgVyT~Vs~y~~WI~~~i~~  421 (424)
T 3nxp_A          402 YGFYTHVFRLKKWIQKVIDQ  421 (424)
T ss_dssp             CEEEEECTTCHHHHHHHHHH
T ss_pred             CEEEEEHHHHHHHHHHHHHH
Confidence            99999999999999999874

>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G*

Probab=100.00  E-value=5.3e-40  Score=280.74  Aligned_cols=168  Identities=32%  Similarity=0.648  Sum_probs=140.0

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------------C----
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------------G----  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------~----  132 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                              +    
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~~   80 (237)
T 1ao5_A            1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMS   80 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCCSSCEEEESCCBSSSCCSSCEECCEEEEEECTTSCGG
T ss_pred             CCCCeECCCCCcCCEEEEeeCCCeEEEEEEeeCCEEEECHHHCCCCCEEEecccccccCCCCcEEEEEEEEEcCCCcCcc
Confidence            689999999999999999998899999999999999999999842                              1    


Q ss_pred             --------------CCceeecc-----------------CcccCCceEEEEeeeecCCC-CCCCccceEEEEEeeChhhH
Q psy8662         133 --------------LGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       133 --------------~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~-~~~~~~l~~~~v~vi~~~~C  180 (260)
                                    +||.|...                 .....+..++++|||.+... ...+..|+++.+++++.++|
T Consensus        81 ~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C  160 (237)
T 1ao5_A           81 LLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENC  160 (237)
T ss_dssp             GGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHH
T ss_pred             cccccccccccCCCCCEEEEEeCCccccCCceeCCCcCCCCCCCCCEEEEEECCccCCCCCCCCCcccEEEEEecChhHh
Confidence                          12332110                 11235678999999987754 35578899999999999999


Q ss_pred             hhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       181 ~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ++. +...+++.|||++......+.|+|||||||++++    +|+||+||| .+|+..+.|++||||++|++||+++|++
T Consensus       161 ~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  235 (237)
T 1ao5_A          161 AKV-YLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICDG----ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMK  235 (237)
T ss_dssp             HHH-CSSCCCTTEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHH
T ss_pred             hhh-hcccCCCCEEEEccCCCCCCCCCCCCcceEEECC----EEeEEEeEcCCCCCCCCCCcEEEEHHHHHHHHHHHHhh
Confidence            986 4556889999998445567999999999999943    799999999 7899888899999999999999999874

>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=3.6e-40  Score=279.74  Aligned_cols=166  Identities=43%  Similarity=0.844  Sum_probs=138.4

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+| +.+.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l-~~~~~~CgGsLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~   79 (223)
T 3mfj_A            1 IVGGYTCGANTVPYQVSL-NSGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSN   79 (223)
T ss_dssp             CBSCEECCTTSSTTEEEE-ESSSEEEEEEEEETTEEEECGGGCCSSCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTT
T ss_pred             CCCCEECCCCcCCEEEEE-EcCCeEEEEEEecCCEEEEhHHhcCCCcEEEECCceecccCCCcEEEEeeEEEECCCCCCC
Confidence            689999999999999999 46779999999999999999999832                                   


Q ss_pred             --CCCcee------------------eccCcccCCceEEEEeeeecCC-CCCCCccceEEEEEeeChhhHhhhhcCCCCC
Q psy8662         132 --GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQ-GGSTSDTLLEVEVPILSNAECKKTAYENRIT  190 (260)
Q Consensus       132 --~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~-~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~  190 (260)
                        .+||.|                  +.. ....+..++++|||.+.. +...+..|+++.+++++.++|+.. +...++
T Consensus        80 ~~~~DIALl~L~~~~~~~~~v~picL~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~-~~~~~~  157 (223)
T 3mfj_A           80 TLNNDIMLIKLKSAASLNSRVASISLPTS-CASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA-YPGQIT  157 (223)
T ss_dssp             TCTTCCEEEEESSCCCCBTTBCCCBCCSS-CCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHH-STTTCC
T ss_pred             CCCCCEEEEEeCCCcccCCcEeeeECCCC-CCCCCCEEEEEeeeccCCCCCcccchheEEEEEEeCHHHhhhh-hcCcCC
Confidence              122332                  111 123578899999998753 334567899999999999999886 445678


Q ss_pred             CCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         191 PNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       191 ~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ++|||++......+.|+|||||||++++    +|+||+|||.+|+..+.|++||||++|++||++++++
T Consensus       158 ~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~C~~~~~p~vyt~V~~~~~WI~~~i~~  222 (223)
T 3mfj_A          158 SNMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             TTEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCEEEccCCCCCCCcCCCCcccceEECC----EEEEEEEECCCCCCCCCCeEEEEHHHhHHHHHHHHhc
Confidence            9999998766668999999999999943    6999999999998778899999999999999999874

>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A*

Probab=100.00  E-value=6e-40  Score=278.96  Aligned_cols=167  Identities=35%  Similarity=0.740  Sum_probs=138.8

Q ss_pred             eeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.+ +.++|+||||+++||||||||+..                                  
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~~v~~~~~Hp~y~   80 (227)
T 2psx_A            1 IINGSDCDMHTQPWQAALLLRPNQLYCGAVLVHPQWLLTAAHCRKKVFRVRLGHYSLSPVYESGQQMFQGVKSIPHPGYS   80 (227)
T ss_dssp             CBTCEECCTTSCTTEEEEEETTTEEEEEEEEEETTEEEECGGGCCSSCEEEESCCBSSCCCCTTCEEEEEEEEEECTTCC
T ss_pred             CCCCEECCCCCCCCEEEEEecCCCceEEEEEEcCCEEEEhHHcCCCCcEEEEeeeecccCCCCCcEEEEEEEEEeCCCCC
Confidence            689999999999999999876 679999999999999999999743                                  


Q ss_pred             ----CCCceeec-----------------cCcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCCC
Q psy8662         132 ----GLGIWVTI-----------------RGKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRI  189 (260)
Q Consensus       132 ----~~~i~l~~-----------------~~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~i  189 (260)
                          .+||.|..                 ......+..++++|||.+.... ..+..|+++.+++++.++|+.. +...+
T Consensus        81 ~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~-~~~~~  159 (227)
T 2psx_A           81 HPGHSNDLMLIKLNRRIRPTKDVRPINVSSHCPSAGTKCLVSGWGTTKSPQVHFPKVLQCLNISVLSQKRCEDA-YPRQI  159 (227)
T ss_dssp             SSSCTTCCEEEEESSCCCCCSSSCCCCBCSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEBCCHHHHHHH-STTTC
T ss_pred             CCCCCCCEEEEEeCCCCCCCCceeeeECCCCCCCCCCEEEEEeCcccCCCCCCCCchheEEEEEecCHhHhhhh-cCCCC
Confidence                11233211                 1112357889999999877554 4567899999999999999985 45568


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ++.|||++. ..+.+.|+|||||||++..    +|+||+||| .+|+..+.|++||||++|++||+++|+.
T Consensus       160 ~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  225 (227)
T 2psx_A          160 DDTMFCAGD-KAGRDSCQGDSGGPVVCNG----SLQGLVSWGDYPCARPNRPGVYTNLCKFTKWIQETIQA  225 (227)
T ss_dssp             CTTEEEECC-STTCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEEGGGCHHHHHHHHHH
T ss_pred             CCCEEcccC-CCCCccCCCCCCcceeeCC----EEEEEEeecCCCCCCCCCCcEEEEHHHhHHHHHHHHhc
Confidence            899999985 3457899999999999964    799999999 6898878899999999999999999874

>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A*

Probab=100.00  E-value=4.4e-40  Score=280.23  Aligned_cols=168  Identities=30%  Similarity=0.518  Sum_probs=141.1

Q ss_pred             eeCCeeCCCCCCceEEEEEec--CeeeeeeEEEeCCEEEeccccccc---------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVHQ---------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~--~~~~C~GtLIs~~~VLTAAhCv~~---------------------------------  131 (260)
                      |+||.++..++|||+|+|+.+  +.++|+||||+++||||||||+..                                 
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~   80 (234)
T 3s9c_A            1 VVGGDECNINEHPFLVALYTSASSTIHCAGALINREWVLTAAHCDRRNIRIKLGMHSKNIRNEDEQIRVPRGKYFCLNTK   80 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTEEEEESCSSSSSCCTTCEEECEEEEECCSSCS
T ss_pred             CCCCeeCCCCCCCeEEEEEECCCCcEEEeeEEeeCCEEEEchhhcCCCceEEEeecccccccCCcceEEeeeEEEeCCCC
Confidence            689999999999999999886  678999999999999999999753                                 


Q ss_pred             -----CCCceeecc-----------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCC
Q psy8662         132 -----GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRI  189 (260)
Q Consensus       132 -----~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i  189 (260)
                           .+||.|...                 .....+..++++|||.+... ..+..|+++.+++++.+.|+..+....+
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~pi~L~~~~~~~~~~~~v~GwG~~~~~-~~~~~l~~~~~~~~~~~~C~~~~~~~~~  159 (234)
T 3s9c_A           81 FPNGLDKDIMLIRLRRPVTYSTHIAPVSLPSRSRGVGSRCRIMGWGKISTT-TYPDVPHCTNIFIVKHKWCEPLYPWVPA  159 (234)
T ss_dssp             STTCGGGCCEEEEESSCCCCBTTBCCCBCCSSCCCTTCEEEEEESSCSBTT-BCCSSCEEEEEEEECGGGTTTTCTTSCT
T ss_pred             CCCCCcCceEEEEECCccccCCcccccccCCCCCCCCCeEEEEeeCCCCCC-CCCccccccceEecCHHHhhhcccCCCC
Confidence                 113333111                 11123788999999987754 5577899999999999999987544678


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +++|||++...++.+.|+|||||||+++.    .|+||+|||.. |+..+.|++||||++|++||+++|++
T Consensus       160 ~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~i~~  226 (234)
T 3s9c_A          160 DSRTLCAGILKGGRDTCHGDSGGPLICNG----EMHGIVAGGSEPCGQHLKPAVYTKVFDYNNWIQSIIAG  226 (234)
T ss_dssp             TSSEEEEECTTSSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             CcceEEeecCCCCCccCCCCCCCeEEEeC----CcEEEEEEeCCCCCCCCCCcEEEEhHHhHHHHHHHHcC
Confidence            89999999777778999999999999964    59999999986 98878899999999999999999875

>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys}

Probab=100.00  E-value=5.9e-40  Score=279.90  Aligned_cols=169  Identities=33%  Similarity=0.619  Sum_probs=141.0

Q ss_pred             eeCCeeCCCCCCceEEEEEec--CeeeeeeEEEeCCEEEeccccccc---------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVHQ---------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~--~~~~C~GtLIs~~~VLTAAhCv~~---------------------------------  131 (260)
                      |+||.++..++|||+|+|+..  +.++|+||||+++||||||||+..                                 
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~h~~~   80 (238)
T 4e7n_A            1 IIGGDECNINEHRFLVALYTSRSRTLFCGGTLINQEWVLTAAHCDRKNFRIKLGMHSKKVPNEDEQTRVPKEKFFCLSSK   80 (238)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTTCCEEEEEEECSSSEEEECGGGCCSSCEEEESCSCSSSCCTTCEEECEEEEECSSTTC
T ss_pred             CCCCeeCCCCCcCcEEEEEECCCCCEEEEEEEecCCEEEEhHHcCCCCCeEEeceeeccccCCCceeEeeeeeEEcCCCC
Confidence            689999999999999999886  678999999999999999999754                                 


Q ss_pred             -----CCCceeecc-----------------CcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcC--
Q psy8662         132 -----GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYE--  186 (260)
Q Consensus       132 -----~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~--  186 (260)
                           .+||.|...                 .....+..++++|||.+.... ..+..|+++.+++++.++|+..+..  
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~  160 (238)
T 4e7n_A           81 NYTLWDKDIMLIRLDSPVKNSKHIAPFSLPSSPPSVGSVCRIMGWGRISPTEGTYPDVPHCVNINLLEYEMCRAPYPEFE  160 (238)
T ss_dssp             CCCSSSCCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECGGGGTTTCGGGC
T ss_pred             CCCCCCCcEEEEEeCCCccCCCceeeeeCCCCCCCCCCEEEEEECCCCCCCCCCCCccceEeeccccCHHHHhhhccccc
Confidence                 123333111                 112247899999999876543 5678899999999999999986432  


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ..++++|||++...+..+.|+|||||||+++.    .|+||+|||.. |+..+.|++||||++|++||+++|+.
T Consensus       161 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~~  230 (238)
T 4e7n_A          161 LPATSRTLCAGILEGGKDTCKGDSGGPLICNG----QFQGIASWGDDPCAQPHKPAAYTKVFDHLDWIENIIAG  230 (238)
T ss_dssp             CCSCCSEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEECCSSTTCTTCCEEEEESGGGHHHHHHHHTT
T ss_pred             CCCCCCeEEeCCCCCCCccCCCCCCcceEECC----EEEEEEEEeCCCCCCCCCCeEEEEhHHHHHHHHHHHhc
Confidence            46788999998777778999999999999954    59999999986 98878999999999999999999875

>1orf_A Granzyme A; hydrolase-hydrolase inhibitor complex; HET: 0G6; 2.40A {Homo sapiens} SCOP: b.47.1.2 PDB: 1op8_A

Probab=100.00  E-value=4.4e-40  Score=280.84  Aligned_cols=170  Identities=37%  Similarity=0.639  Sum_probs=139.0

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||||+|..++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~~   80 (234)
T 1orf_A            1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDP   80 (234)
T ss_dssp             CBSCEECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCCTTCEEEESCSBSSSCCTTCEEECEEEEEECTTCCT
T ss_pred             CCCCEECCCCCCCeEEEEccCCceEEEEEEeeCCEEEEchhcCCCCCceEEEeccccCcCCCceEEEEEEEEEcCCCCCC
Confidence            689999999999999999988889999999999999999999842                                   


Q ss_pred             ---CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhh-hcC--
Q psy8662         132 ---GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT-AYE--  186 (260)
Q Consensus       132 ---~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~-~~~--  186 (260)
                         .+||.|                  +.... ...+..++++|||.+..++..+..|+++.+++++.++|+.. .+.  
T Consensus        81 ~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~~~~~  160 (234)
T 1orf_A           81 ATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFN  160 (234)
T ss_dssp             TTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTTTTT
T ss_pred             CCCCCCEEEEEECCcCccCCCeeeeecCCCcCCCCCCCEEEEEECCcCCCCCCccccceEeEEEeeCHHHcCCccccccC
Confidence               122322                  22111 13578899999998876666678899999999999999842 121  


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEech-hhHHHHHHHhhcC
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVN-RYLTWIKNNTIDA  260 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~-~y~~WI~~~~~~a  260 (260)
                      ..+.++|||++......+.|+|||||||++++    +|+||+|||.  +|+..+.|++||||+ +|++||+++++.+
T Consensus       161 ~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~~~C~~~~~p~vyt~v~~~~~~WI~~~~~~~  233 (234)
T 1orf_A          161 PVIGMNMVCAGSLRGGRDSCNGDSGSPLLCEG----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKGA  233 (234)
T ss_dssp             TCCCTTEEEEECSSCCCBCCTTCTTCEEEETT----EEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHCC-
T ss_pred             CccCCCEEEecCCCCCCcCCCCCCCCeEEECC----EEEEEEEEcCCCCCCCCCCCCEEEEchHHHHHHHHHHHHhc
Confidence            23344999998765668999999999999953    7999999997  898878899999999 9999999999864

>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis}

Probab=100.00  E-value=2.5e-40  Score=281.29  Aligned_cols=168  Identities=25%  Similarity=0.461  Sum_probs=141.6

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||+|+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~h~y~~~   80 (235)
T 3h7t_A            1 IIGGKKSDITKEPWAVGVLVDEKPFCGGSILTANFVITAAQCVDGTKPSDISIHYGSSYRTTKGTSVMAKKIYIVRYHPL   80 (235)
T ss_dssp             CBTCEECCTTTSTTEEEEEETTSCCEEEEESSSSEEEECHHHHTTCCGGGEEEEESCSBSSSSSEEEEEEEEEECSCBTT
T ss_pred             CCCCEECCCCCCCcEEEEecCCCceEeEEEeeCCEEEECHHHCCCCCCCeeEEEcCccccccCCceeeeeeEEeeecCCC
Confidence            689999999999999999998899999999999999999999942                                   


Q ss_pred             --CCCcee-------------------eccCc-ccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCC-
Q psy8662         132 --GLGIWV-------------------TIRGK-SFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYEN-  187 (260)
Q Consensus       132 --~~~i~l-------------------~~~~~-~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~-  187 (260)
                        .+||.|                   +.... ...+..++++|||.+...+ ..+..|+++.+++++.++|+..+... 
T Consensus        81 ~~~~DiAll~L~~~v~~~~~~v~pi~Lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~  160 (235)
T 3h7t_A           81 TMQNNYAVIETEMPIKLDDKTTKKIELPSLLYDPEPDTSVLVSGWGSTNFKSLEYSGDLMEANFTVVDRKSCEEQYKQIE  160 (235)
T ss_dssp             TTBTCCEEEEESSCCCCCSSSCCCCBCCCTTCCCCTTCEEEEEECCCSSTTCCCCCSBCEEEEEEEECHHHHHHHHHTTT
T ss_pred             CCCCCeEEEEeccccccCCccccceecCccccCCCCCCeEEEEecCCCCCCCCchhHHHhhCCCceeCHHHHHHHhhhcc
Confidence              122322                   11111 3357889999999887655 56788999999999999999875332 


Q ss_pred             ---CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 ---RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ---~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                         .++++|||++...+..+.|+|||||||++++    .|+||+||+.+|.. +.|++||||++|++||+++++.
T Consensus       161 ~~~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~C~~-~~p~vyt~v~~~~~WI~~~i~~  230 (235)
T 3h7t_A          161 ADKYIYDGVFCAGGEYDETYIGYGDAGDPAVQNG----TLVGVASYISSMPS-EFPSVFLRVGYYVLDIKDIISG  230 (235)
T ss_dssp             CGGGCSTTEEEECBTTTTBBCCTTCTTCEEEETT----EEEEEECCCTTCCT-TSCEEEEEGGGGHHHHHHHHTT
T ss_pred             cCccccCCeEecCCCCCCCccccCCCCCceeeCC----eEEEEEEecCCCCC-CCCceEEEHHHHHHHHHHHHhC
Confidence               3889999999777678999999999999943    49999999999987 7899999999999999999875

>3rm2_H Thrombin heavy chain; serine protease, kringle, hydrolase, blood coagulation, BLOO clotting, convertion of fibrinogen to fibrin; HET: TYS NAG S00; 1.23A {Homo sapiens} PDB: 1a2c_H* 1a3e_H* 1a46_H* 1a4w_H* 1a5g_H* 1a61_H* 1abi_H* 1abj_H* 1ad8_H* 1ae8_H* 1afe_H* 1a3b_H* 1ai8_H* 1aix_H* 1awf_H* 1awh_B* 1ay6_H* 1b5g_H* 1ba8_B* 1bb0_B* ...

Probab=100.00  E-value=6.9e-40  Score=282.44  Aligned_cols=172  Identities=38%  Similarity=0.679  Sum_probs=140.2

Q ss_pred             eeCCeeCCCCCCceEEEEEec--CeeeeeeEEEeCCEEEeccccccc---------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK--KRFYCGATLINNLYVLTAAHCVHQ---------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~--~~~~C~GtLIs~~~VLTAAhCv~~---------------------------------  131 (260)
                      |+||.+|..++|||+|+|+.+  +.++|+||||+++||||||||+..                                 
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~   80 (259)
T 3rm2_H            1 IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM   80 (259)
T ss_dssp             CBSCEECCTTSSTTEEEEEEETTEEEEEEEEECSSSEEEECGGGTEEGGGTEECCGGGEEEEESCCBSSSCCTTTCEEEE
T ss_pred             CCCCEECCCCCcCCEEEEEECCCCceEEEEEEEeCCEEEEcHHhCcccccccccCcccEEEEECcccccccccCcceeeE
Confidence            689999999999999999764  468999999999999999999831                                 


Q ss_pred             --------C--------CCceeeccCc----------------------ccCCceEEEEeeeecCCCC------CCCccc
Q psy8662         132 --------G--------LGIWVTIRGK----------------------SFSNKTGIVTGWGVQKQGG------STSDTL  167 (260)
Q Consensus       132 --------~--------~~i~l~~~~~----------------------~~~~~~~~v~Gwg~~~~~~------~~~~~l  167 (260)
                              +        +||.|.....                      ...+..++++|||.+....      ..+..|
T Consensus        81 v~~i~~hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~~~~~~~l  160 (259)
T 3rm2_H           81 LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL  160 (259)
T ss_dssp             EEEEEECTTCBTTTTCBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHCCTTCEEEEEESCCSSCC-------CCCSBC
T ss_pred             EEEEEECCCCCCCCCCCCcEEEEEeCCceEcCCCcccccCCCccccccccCCCCEEEEeecCCCcCcCCccccccccccc
Confidence                    1        1233311100                      1246789999999875431      126789


Q ss_pred             eEEEEEeeChhhHhhhhcCCCCCCCeEEeecCC---CCCCCCcCCCCCceEEee--CCeeEEEEEEeeCCCCCCCCCCcE
Q psy8662         168 LEVEVPILSNAECKKTAYENRITPNMLCAGYPK---GEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGV  242 (260)
Q Consensus       168 ~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~---~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~~~~p~v  242 (260)
                      +++.+++++.+.|+.. +...++++|||++...   ...+.|+|||||||++..  +++|+|+||+|||.+|+..+.|++
T Consensus       161 ~~~~~~~~~~~~C~~~-~~~~~~~~~~Cag~~~~~~~~~~~C~GDsGgPL~~~~~~~~~~~l~GI~S~g~~C~~~~~p~v  239 (259)
T 3rm2_H          161 QVVNLPIVERPVCKDS-TRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGF  239 (259)
T ss_dssp             EEEEEEBCCHHHHHHT-CSSCCCTTEEEECCCGGGSCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSCTTCCEE
T ss_pred             eEEEEEEeCHHHhhhh-hcccCCCceEeeeccCCCCCCCcccCCCCCCeeEEEECCCCCEEEEEEEEECCCCCCCCCCeE
Confidence            9999999999999986 4567889999997542   235899999999999987  799999999999999998888999


Q ss_pred             EEechhhHHHHHHHhhc
Q psy8662         243 YARVNRYLTWIKNNTID  259 (260)
Q Consensus       243 yt~V~~y~~WI~~~~~~  259 (260)
                      ||||+.|++||+++|+.
T Consensus       240 yt~V~~~~~WI~~~i~~  256 (259)
T 3rm2_H          240 YTHVFRLKKWIQKVIDQ  256 (259)
T ss_dssp             EEETGGGHHHHHHHHHH
T ss_pred             EEEHHHhHHHHHHHHHH
Confidence            99999999999999874

>2xxl_A GRAM-positive specific serine protease, isoform B; hydrolase, innate immunity; HET: NAG FUC BMA; 1.80A {Drosophila melanogaster}

Probab=100.00  E-value=2.1e-40  Score=304.83  Aligned_cols=179  Identities=37%  Similarity=0.706  Sum_probs=145.2

Q ss_pred             ccCCCCCCCceeCCeeCCCCCCceEEEEEec--C--eeeeeeEEEeCCEEEeccccccc---------------------
Q psy8662          77 TCGAVNKKTRIVGGQVTYVHQYPWMALLMYK--K--RFYCGATLINNLYVLTAAHCVHQ---------------------  131 (260)
Q Consensus        77 ~cg~~~~~~ri~gG~~a~~~~~Pw~v~l~~~--~--~~~C~GtLIs~~~VLTAAhCv~~---------------------  131 (260)
                      .|| .....||+||.+|..++|||||+|.+.  +  .++|+||||+++||||||||+..                     
T Consensus       110 ~CG-~~~~~rIvgG~~a~~~e~Pw~v~L~~~~~g~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~lG~~~~~~~~~~  188 (408)
T 2xxl_A          110 DCG-NFLSQRVSNGYEVKLSSRPWMALLRYQQFGESRFLCGGAMISERYILTAAHCVHGLQNDLYEIRLGEHRISTEEDC  188 (408)
T ss_dssp             CCS-CCCCCCCCSSCBCCTTSSTTEEEEEEECSSSEEEEEEEEEEETTEEEECGGGTTTCTTTEEEEEESCSBTTCSCCE
T ss_pred             ccC-CCCCCceECCEECCCCCCCcEEEEEeecCCceeEEEEEEEEECCEEEEcHHhcCCCCCceEEEEeeeeECCCccch
Confidence            677 455789999999999999999999873  2  68999999999999999999842                     


Q ss_pred             --------------------------------CCCcee------------------eccCc----ccCCceEEEEeeeec
Q psy8662         132 --------------------------------GLGIWV------------------TIRGK----SFSNKTGIVTGWGVQ  157 (260)
Q Consensus       132 --------------------------------~~~i~l------------------~~~~~----~~~~~~~~v~Gwg~~  157 (260)
                                                      .+||.|                  |....    ...+..++++|||.+
T Consensus       189 ~~~~~~~~c~~~~~~~~V~~ii~Hp~y~~~~~~nDIALL~L~~~v~~~~~V~PICLp~~~~~~~~~~~~~~~~v~GWG~t  268 (408)
T 2xxl_A          189 RQQGRKKKCAPPVVNVGIEKHLIHEKYDARHIMHDIALLKLNRSVPFQKHIKPICLPITDELKEKAEQISTYFVTGWGTT  268 (408)
T ss_dssp             EEETTEEEECCCCEEEEEEEEEECTTCBTTTTBSCCEEEEESSCCCCBTTBCCCBCCCSHHHHHHTTTCSEEEEEECCCB
T ss_pred             hhcccccccCCceEEEeEEEEEeCCCCCccccccceEEEEECCccccccCccccCCCCcccccccccCCCEEEEEEeCcC
Confidence                                            011222                  21111    235678999999988


Q ss_pred             CCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceE------EeeCCeeEEEEEEeeC
Q psy8662         158 KQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLH------YANETVHHIVGVVSWG  231 (260)
Q Consensus       158 ~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~------~~~~~~~~L~GI~S~g  231 (260)
                      ..+. .+..|+++.+++++.++|+..+.. .+..+||||+... +.++|+|||||||+      +..+++|+|+||+|||
T Consensus       269 ~~~~-~s~~L~~~~v~iv~~~~C~~~~~~-~~~~~~iCAg~~~-g~d~C~GDSGGPL~~~~~~~~~~~~~~~l~GIvS~G  345 (408)
T 2xxl_A          269 ENGS-SSDVLLQANVPLQPRSACSQAYRR-AVPLSQLCVGGGD-LQDSCKGDSGGPLQAPAQYLGEYAPKMVEFGIVSQG  345 (408)
T ss_dssp             TTBC-SCSBCEEEEEEEECHHHHHHHHTS-CCCTTEEEECCSC-SSSGGGSCTTCEEEEEECCTTCSSCEEEEEEEEEEC
T ss_pred             CCCC-CCchheEeeeeecCHHHHHHHhcc-cCCCceEeecCCC-CCccCCCcccChhhcCccceEEECCEEEEEEEEEEC
Confidence            7544 578899999999999999986533 3566999998654 47999999999994      4446799999999999


Q ss_pred             -CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         232 -EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       232 -~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                       .+|+..+.|+|||||++|++||+++++.
T Consensus       346 ~~~Cg~~~~PgVYTrVs~y~~WI~~~i~~  374 (408)
T 2xxl_A          346 VVTCGQISLPGLYTNVGEYVQWITDTMAS  374 (408)
T ss_dssp             CCCTTSCCCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCCCCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence             7899888899999999999999999864

>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ...

Probab=100.00  E-value=7.9e-40  Score=276.88  Aligned_cols=167  Identities=43%  Similarity=0.833  Sum_probs=140.6

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||+|+|. .+.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~-~~~~~C~GtLI~~~~VLTAAhC~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~y~~~   79 (223)
T 4i8h_A            1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSN   79 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SSSEEEEEEECSSSEEEECGGGCCSSCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTT
T ss_pred             CCCCEECCCCCCCeEEEec-CCCcEEEEEEEcCCEEEecHHhCCCCcEEEEccccccccCCCcEEEEEeEEEECcCCCCC
Confidence            6899999999999999997 5678899999999999999999853                                   


Q ss_pred             --CCCceeecc-----------------CcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCCCCC
Q psy8662         132 --GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRITP  191 (260)
Q Consensus       132 --~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~  191 (260)
                        .+||.|...                 .....+..++++|||.+...+ ..+..|+++.+++++.++|+.. +...+++
T Consensus        80 ~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~~~~~  158 (223)
T 4i8h_A           80 TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA-YPGQITS  158 (223)
T ss_dssp             TCTTCCEEEEESSCCCCBTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHH-STTTCCT
T ss_pred             CCcCCEEEEEECCcCcCCCceeceECCCCCCCCCCEEEEEecccccCCCCCccccceEEEeeecCHHHHHHh-hCCCCCC
Confidence              123333111                 112357899999999876543 4467899999999999999986 4557899


Q ss_pred             CeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       192 ~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +|||++......+.|+|||||||++..    +|+||+|||.+|+..+.|++||||+.|++||+++|++
T Consensus       159 ~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~  222 (223)
T 4i8h_A          159 NMFCAGYLEGGKDSCQGDSGGPVVCSG----KLQGIVSWGSGCAQKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             TEEEESCTTSSCBCCTTCTTCEEEETT----EEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             CeEeccCCCCCCccCCCCCCCcEEECC----EEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            999998766778999999999999954    7999999999999888899999999999999999975

>1npm_A Neuropsin; serine proteinase, glycoprotein; HET: NAG; 2.10A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=9.1e-40  Score=277.47  Aligned_cols=165  Identities=38%  Similarity=0.749  Sum_probs=137.6

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------------CC---
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------------GL---  133 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------~~---  133 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                              +|   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLI~~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~   80 (225)
T 1npm_A            1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNS   80 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCEEEESCSBTTC--CCCEEECEEEEEECTTCCSS
T ss_pred             CCCCEECCCCCcCcEEEEeeCCceEEEEEEECCCEEEEhHHcCCCCceEEEeeeEcCCCCCCcEEEEEEEEEECCCCCCC
Confidence            689999999999999999988889999999999999999999843                              22   


Q ss_pred             -------Ccee------------------eccCcccCCceEEEEeeeecC-CCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         134 -------GIWV------------------TIRGKSFSNKTGIVTGWGVQK-QGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       134 -------~i~l------------------~~~~~~~~~~~~~v~Gwg~~~-~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                             ||.|                  +.. ....+..++++|||.+. ..+..+..|+++.+++++.++|+.. +..
T Consensus        81 ~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~-~~~  158 (225)
T 1npm_A           81 NPEDHSHDIMLIRLQNSANLGDKVKPVQLANL-CPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA-YPG  158 (225)
T ss_dssp             CTTCCTTCCEEEEESSCCCCSSSSCCCEECSS-CCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHH-STT
T ss_pred             CccCccccEEEEeeCCcccCCCceeceECCCC-CCCCCCEEEEEeCCcccCCCCCCCccceEeEEeeecHHHhhHH-hCC
Confidence                   2222                  111 12357789999999874 3445678899999999999999986 445


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .++++|||++... +.+.|+|||||||+++.    +|+||+||| ..|+..+.|++||||++|++||+++|+
T Consensus       159 ~~~~~~~Ca~~~~-~~~~C~GDSGgPL~~~~----~l~GI~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~  225 (225)
T 1npm_A          159 KITEGMVCAGSSN-GADTCQGDSGGPLVCDG----MLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             TCCTTEEEEECTT-CCBCCTTCTTCEEEETT----EEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             CCCCCEEeecCCC-CCeecCCCCCchheECC----EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            6889999998654 57899999999999853    799999999 679877889999999999999999874

>1iau_A Granzyme B; hydrolase-hydrolase inhibitor complex; HET: ASJ NAG FUC MAN BMA; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1fq3_A* 1fi8_A 3tk9_A 3tju_A 3tjv_A

Probab=100.00  E-value=1.1e-39  Score=277.19  Aligned_cols=167  Identities=34%  Similarity=0.541  Sum_probs=136.4

Q ss_pred             eeCCeeCCCCCCceEEEEEe--cC-eeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMY--KK-RFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~--~~-~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.+|..++|||||+|..  .+ .++|+||||+++||||||||+..                                
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y   80 (227)
T 1iau_A            1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIRDDFVLTAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAY   80 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSSCEEEEEEEEEETTEEEECGGGCCSEEEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred             CCCCeECCCCCcCcEEEEEEECCCCceEEEEEEEcCCEEEECHHhCCCceEEEEccccccCCCCccEEEEEEEEECCCCC
Confidence            68999999999999999976  34 48999999999999999999843                                


Q ss_pred             -----CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+||.|                  |.... ...+..++++|||.+...+..+..|+++.+++++.++|+..+...
T Consensus        81 ~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~g~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~~~~~  160 (227)
T 1iau_A           81 NPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHY  160 (227)
T ss_dssp             CTTTCTTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHHHTTTT
T ss_pred             CCCCCCCCeEEEEECCcccCCCceecccCCCCCCCCCCCCEEEEEEcccCCCCCCcCceeeEeeeeeechHHhhhHhccc
Confidence                 123333                  22221 135789999999988766666788999999999999999864333


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ...+.|||++......+.|+|||||||++++    +|+||+|||  |+..+.|++||||++|++||+++|++
T Consensus       161 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g--c~~~~~p~vyt~v~~~~~WI~~~~~~  226 (227)
T 1iau_A          161 YDSTIELCVGDPEIKKTSFKGDSGGPLVCNK----VAQGIVSYG--RNNGMPPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             CCTTTEEEESCTTSCCBCCTTCTTSEEEETT----EEEEEEEEE--CTTSCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             cCCCcEEEeECCCCCCeeeecCCCchheEee----EEEEEEeEe--cCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence            3445599998766668999999999999953    799999999  77667799999999999999999874

>1zjk_A Mannan-binding lectin serine protease 2; beta barrel, modular protein, hydrolase; 2.18A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1 PDB: 1q3x_A

Probab=100.00  E-value=7.4e-40  Score=300.67  Aligned_cols=180  Identities=34%  Similarity=0.689  Sum_probs=147.2

Q ss_pred             ccCCCC--CCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------
Q psy8662          77 TCGAVN--KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------  131 (260)
Q Consensus        77 ~cg~~~--~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------  131 (260)
                      .||...  ...||+||.+|..++|||||+|+.  .++|+||||+++||||||||+..                       
T Consensus       150 ~CG~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~--~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~V~~G~~~~~~~~~~  227 (403)
T 1zjk_A          150 VCGLSARTTGGQIYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYT  227 (403)
T ss_dssp             CCCCCSSCCSCCCSSCEECCTTSSTTEEEEEE--SCCEEEEEETTTEEEECHHHHGGGTTCSTTEEEEESCSBTTCSCCE
T ss_pred             CCCCCCCCCCccccCCcCCCCCCcCCEeEecc--CCceEEEEecCCEEEEcHHhCCCCCCCcceEEEEccccccCCCCce
Confidence            677654  357999999999999999999986  57899999999999999999842                       


Q ss_pred             -----------C--------CCcee------------------eccCc---ccCCceEEEEeeeecCCCCCCCccceEEE
Q psy8662         132 -----------G--------LGIWV------------------TIRGK---SFSNKTGIVTGWGVQKQGGSTSDTLLEVE  171 (260)
Q Consensus       132 -----------~--------~~i~l------------------~~~~~---~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~  171 (260)
                                 +        +||.|                  |....   ...+..++++|||.+..+ ..+..|+++.
T Consensus       228 ~~~v~~i~~Hp~y~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~v~GWG~~~~~-~~~~~L~~~~  306 (403)
T 1zjk_A          228 QAWSEAVFIHEGYTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG-FLARNLMYVD  306 (403)
T ss_dssp             EEEEEEEEECTTCCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESCTTSSS-CCCSBCEEEE
T ss_pred             EEeEEEEEECCCCCCCCCCcccEEEEEeCCcCcCCCceecccCCCcccccccCCCCeEEEEcCCcCCCC-ccCcccEEEE
Confidence                       1        12332                  22211   234678999999987654 4578899999


Q ss_pred             EEeeChhhHhhhhcCC-----CCCCCeEEeecCCCCCCCCcCCCCCceEEee--CCeeEEEEEEeeC-CCCCCCCCCcEE
Q psy8662         172 VPILSNAECKKTAYEN-----RITPNMLCAGYPKGEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWG-EGCAQENYPGVY  243 (260)
Q Consensus       172 v~vi~~~~C~~~~~~~-----~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g-~~C~~~~~p~vy  243 (260)
                      +++++.++|+..+...     .++++||||+...+..++|+|||||||++..  +++|+|+||+||| .+|+..+.|+||
T Consensus       307 v~v~~~~~C~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~C~GDSGGPL~~~~~~~~~~~l~GIvS~g~~~C~~~~~p~vy  386 (403)
T 1zjk_A          307 IPIVDHQKCTAAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVY  386 (403)
T ss_dssp             EEEECHHHHHHHTTSSSCCSSCSCTTEEEECCSSCCTTSCSCSTTCEEEEEETTTTEEEEEEEEEEECSCC--CCCCEEE
T ss_pred             EeEeCHHHHhhhhhccccccCcCCCCeEeeccCCCCCCCCcCCCCccEEEEECCCCcEEEEEEEEECCCCCCCCCCCeEE
Confidence            9999999998865332     5889999998766678999999999999974  5899999999999 799887889999


Q ss_pred             EechhhHHHHHHHhhc
Q psy8662         244 ARVNRYLTWIKNNTID  259 (260)
Q Consensus       244 t~V~~y~~WI~~~~~~  259 (260)
                      |||+.|++||+++|++
T Consensus       387 t~V~~y~~WI~~~i~~  402 (403)
T 1zjk_A          387 TKVINYIPWIENIISD  402 (403)
T ss_dssp             EEGGGGHHHHHHHHTT
T ss_pred             EEHHHHHHHHHHHHhc
Confidence            9999999999999874

>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2

Probab=100.00  E-value=9.6e-40  Score=278.95  Aligned_cols=169  Identities=34%  Similarity=0.709  Sum_probs=139.7

Q ss_pred             eeCCeeCCCCCCceEEEEEec--Ce--eeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK--KR--FYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~--~~--~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||.+|..++|||+|+|+..  +.  ++|+||||+++||||||||+..                               
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~~~~v~~i~~h   80 (236)
T 1elt_A            1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWRVVLGEHNLNTNEGKEQIMTVNSVFIH   80 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSSCCCEEEEESCSBTTSCCSCCEEECEEEEEEC
T ss_pred             CCCCEECCCCCCCCEEEEEEecCCceeeEEEEEEEeCCEEEECHHhhCCcCceEEEEccccCCCCCCCcEEEEEEEEEEC
Confidence            689999999999999999873  33  8899999999999999999853                               


Q ss_pred             ----------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                .+||.|                  +.... ...+..++++|||.+..++..+..|+++.+++++.++|+.
T Consensus        81 p~y~~~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~  160 (236)
T 1elt_A           81 SGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSS  160 (236)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTS
T ss_pred             CCCCCCCCCCCccEEEEECCCCCccCCcEEeccCCCccccCCCCCEEEEEeCCCcCCCCCcChhheEeEeeecCHHHhcc
Confidence                      113332                  21111 1246789999999887666667889999999999999987


Q ss_pred             hh-cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         183 TA-YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       183 ~~-~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      .+ +...+++.|||++. . +.+.|+|||||||++..+++|+|+||+||+.  +|+..+.|++||||++|++||+++|
T Consensus       161 ~~~~~~~~~~~~~Ca~~-~-~~~~C~GDSGgPL~~~~~g~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~i  236 (236)
T 1elt_A          161 SGWWGSTVKTTMVCAGG-G-ANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             TTTTGGGSCTTEEEECC-S-SCBCCTTCTTCEEEEEETTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             ccccCCcCCcceEEecC-C-CCccCCCCCCCeeEEEECCEEEEEEEEEEeCCCCCCCCCCCeEEEEHHHhHHHHHhhC
Confidence            53 23357889999983 3 3789999999999999889999999999985  8987788999999999999999875

>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A

Probab=100.00  E-value=1.5e-39  Score=276.04  Aligned_cols=167  Identities=35%  Similarity=0.693  Sum_probs=137.7

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+....++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~v~~~~~Hp~y~~~~~   80 (224)
T 2qxi_A            1 IIDGAPCARGSHPWQVALLSGNQLHCGGVLVNERWVLTAAHCKMNEYTVHLGSDTLGDRRAQRIKASKSFRHPGYSTQTH   80 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSCEEEEESCSBTTCTTSEEEEECEEEECTTCCTTTC
T ss_pred             CCCCeECCCCCCCCEEEEeeCCCeEEEEEEecCCEEEEhHHcCCCCcEEEEeeeecCCCccEEEEEEEEEECCCCCCCCC
Confidence            689999999999999999654455999999999999999999842                                   


Q ss_pred             CCCcee------------------eccCcccCCceEEEEeeeecCC-CCCCCccceEEEEEeeChhhHhhhhcCCCCCCC
Q psy8662         132 GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQ-GGSTSDTLLEVEVPILSNAECKKTAYENRITPN  192 (260)
Q Consensus       132 ~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~-~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~  192 (260)
                      .+||.|                  +.. ....+..++++|||.+.. ....+..|+++.+++++.++|+..+ ...+.+.
T Consensus        81 ~~DIALl~L~~~~~~~~~v~picL~~~-~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C~~~~-~~~~~~~  158 (224)
T 2qxi_A           81 VNDLMLVKLNSQARLSSMVKKVRLPSR-CEPPGTTCTVSGWGTTTSPDVTFPSDLMCVDVKLISPQDCTKVY-KDLLENS  158 (224)
T ss_dssp             TTCCEEEECSSCCCCBTTBCCCCCCSS-CCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECHHHHHHHH-GGGCCTT
T ss_pred             cCcEEEEEeCCCCcCCCceeeEECCCC-CCCCCCEEEEEeCCccCCCCCCCChhheEEEeeecCHHHhhHHh-cCcCCCC
Confidence            122333                  111 123578999999998753 3345678999999999999998864 4457889


Q ss_pred             eEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         193 MLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       193 ~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |||++......+.|+|||||||+++.    +|+||+||| ..|+..+.|++||||++|++||++++++
T Consensus       159 ~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  222 (224)
T 2qxi_A          159 MLCAGIPDSKKNACNGDSGGPLVCRG----TLQGLVSWGTFPCGQPNDPGVYTQVCKFTKWINDTMKK  222 (224)
T ss_dssp             EEEEECTTCCCBCCTTCTTCEEEETT----EEEEEEEECCSSSCCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             eEEecCCCCCCccCCCCccccEEECC----EEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHhc
Confidence            99998766668999999999999943    799999999 6898878899999999999999999874

>3fzz_A Granzyme C; hydrolase, cytolysis, protease, serine protease, zymogen; 2.50A {Mus musculus} SCOP: b.47.1.2 PDB: 3g01_A

Probab=100.00  E-value=2e-39  Score=274.89  Aligned_cols=167  Identities=31%  Similarity=0.565  Sum_probs=140.1

Q ss_pred             eeCCeeCCCCCCceEEEEEec---C-eeeeeeEEEeCCEEEeccccccc------------------------------C
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK---K-RFYCGATLINNLYVLTAAHCVHQ------------------------------G  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~---~-~~~C~GtLIs~~~VLTAAhCv~~------------------------------~  132 (260)
                      |+||.++..++|||||+|...   + .++|+||||+++||||||||+..                              +
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~   80 (227)
T 3fzz_A            1 IIGGNEISPHSRPYMAYYEFLKVGGKKMFCGGFLVRDKFVLTAAHCKGRSMTVTLGAHNIKAKEETQQIIPVAKAIPHPD   80 (227)
T ss_dssp             CBTCEECCTTSSTTEEEEEEECSSSCEEEEEEEEEETTEEEECTTCCCEEEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCcCCEEEEEEEeCCCceeEEEEEEEeCCEEEECcccCCCCcEEEEcccccCCCCCCceEEEEEEEEECcC
Confidence            689999999999999999863   3 78999999999999999999743                              1


Q ss_pred             -------CCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         133 -------LGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       133 -------~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                             +||.|                  +.... ...+..++++|||.+...+..+..|+++.+++++.+.|+..+..
T Consensus        81 y~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  160 (227)
T 3fzz_A           81 YNPDDRSNDIMLLKLVRNAKRTRAVRPLNLPRRNAHVKPGDECYVAGWGKVTPDGEFPKTLHEVKLTVQKDQVCESQFQS  160 (227)
T ss_dssp             CBTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSCSSTTSCCCSBCEEEEEEBCCHHHHHHHHTT
T ss_pred             CCCCCCcCCEEEEEECCcCCCCCcccccCCCCcccCCCCCCEEEEEECCcccCCCCCCCeeeEEEeeeecHHHhhhhhcc
Confidence                   23333                  22221 13578899999998876666788999999999999999987655


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ....+++||++......+.|+|||||||++..    +|+||+|||..|+..  |++||||++|++||+++|++
T Consensus       161 ~~~~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~----~l~Gi~S~g~~c~~~--p~vyt~V~~~~~WI~~~i~~  227 (227)
T 3fzz_A          161 SYNRANEICVGDSKIKGASFEEDSGGPLVCKR----AAAGIVSYGQTDGSA--PQVFTRVLSFVSWIKKTMKH  227 (227)
T ss_dssp             TCCTTTEEEECCCSSCBCCTTTTTTCEEEETT----EEEEEEEECCTTCSS--SEEEEEGGGTHHHHHHHHTC
T ss_pred             ccCCCceEEEeCCCCCCcccccCCccceEEec----CCcEEEEECCCCCCC--CeEEEEhHHhHHHHHHHHhC
Confidence            56688999998766678999999999999964    899999999998764  99999999999999999874

>1gvz_A Kallikrein-1E2; antigen, prostate specific antigen, hydrolase; 1.42A {Equus caballus} SCOP: b.47.1.2

Probab=100.00  E-value=4.2e-40  Score=281.37  Aligned_cols=168  Identities=32%  Similarity=0.554  Sum_probs=139.0

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~y~~~   80 (237)
T 1gvz_A            1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLS   80 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCEEEESCSBTTSCCTTCEEECEEEEEECTTSCGG
T ss_pred             CCCCEECCCCCCCeEEEEeeCCceEEEeEEeeCCEEEEcHHhCCCCCeEEEeecccccCCCCceEEEeeeEecCCccCcc
Confidence            689999999999999999988889999999999999999999832                                   


Q ss_pred             -------------CCCceeecc-----------------CcccCCceEEEEeeeecC-CCCCCCccceEEEEEeeChhhH
Q psy8662         132 -------------GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQK-QGGSTSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       132 -------------~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~-~~~~~~~~l~~~~v~vi~~~~C  180 (260)
                                   .+||.|...                 .....+..++++|||.+. ..+..+..|+++.+++++.++|
T Consensus        81 ~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C  160 (237)
T 1gvz_A           81 LLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKC  160 (237)
T ss_dssp             GGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECGGGG
T ss_pred             cccccccccccccCCceEEEEeCCCcccCCcEeeeECCCCCCCCCCEEEEECCCcccCCCCCCCCccEEEEEeEeChhHh
Confidence                         123333111                 112356789999999874 3344577899999999999999


Q ss_pred             hhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       181 ~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +.. +...+++.|||++......+.|+|||||||+++.    +|+||+|||. .|+..+.|++||||++|++||++++++
T Consensus       161 ~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  235 (237)
T 1gvz_A          161 ARA-YPEKMTEFVLCATHRDDSGSICLGDSGGALICDG----VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEK  235 (237)
T ss_dssp             CSS-CGGGCCTTEEEEECSSTTCEECGGGTTCEEEETT----EEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHHH
T ss_pred             hhh-hhhcCCCceEEEeeCCCCCccCCCCccCcEeeCC----EEEEEEEeCCCCCCCCCCCcEEEEHHHHHHHHHHHHhc
Confidence            875 3446789999998766667899999999999943    7999999998 898778899999999999999999874

>1md8_A C1R complement serine protease; innate immunity, activation, substrate specificity, hydrolase; 2.80A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 PDB: 1md7_A*

Probab=100.00  E-value=1.2e-39  Score=292.04  Aligned_cols=177  Identities=31%  Similarity=0.588  Sum_probs=141.4

Q ss_pred             ccCCCC----CCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc---------------------
Q psy8662          77 TCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ---------------------  131 (260)
Q Consensus        77 ~cg~~~----~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~---------------------  131 (260)
                      .||...    ...||+||.+|..++|||||+|...  ++|+||||+++||||||||+..                     
T Consensus        76 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~--~~CgGsLIs~~~VLTAAHCv~~~~~~~~~~~~~~V~~G~~~~~  153 (329)
T 1md8_A           76 VCGKPVNPVEQRQRIIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVE  153 (329)
T ss_dssp             CCSCCSSCCCCC--CBSCCBCCTTSCTTEEEEESS--SEEEEEEETTTEEEECGGGTSCTTC-----CCCCEEESCSBHH
T ss_pred             CCCCCCCcccccccccCCEECCCCCCCCeEeeccC--CCcceEEecCCEEEecCCEEEeCCcccCCCceEEEEecccccc
Confidence            477642    4579999999999999999999753  4799999999999999999851                     


Q ss_pred             -----------------CC----------Ccee------------------eccCcc-cCCceEEEEeeeecCCCCCCCc
Q psy8662         132 -----------------GL----------GIWV------------------TIRGKS-FSNKTGIVTGWGVQKQGGSTSD  165 (260)
Q Consensus       132 -----------------~~----------~i~l------------------~~~~~~-~~~~~~~v~Gwg~~~~~~~~~~  165 (260)
                                       +|          ||.|                  |..... ..+..++++|||.+...  .+.
T Consensus       154 ~~~~~~~~~V~~i~~Hp~y~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~--~~~  231 (329)
T 1md8_A          154 ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAH  231 (329)
T ss_dssp             HHHHHCCCCEEEEEECSSCCSSCTTCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCBCSSS--BCS
T ss_pred             ccccccceeeEEEEECCCcccccCCCCCccEEEEEECCcccCCCceEccccCCCccccCCCCEEEEEeCCCCCCC--CCc
Confidence                             11          2332                  211111 24678999999987643  567


Q ss_pred             cceEEEEEeeChhhHhhhhc----CCCCCCCeEEeecCCCCCCCCcCCCCCceEEe--eCCeeEEEEEEeeCCCCCCCCC
Q psy8662         166 TLLEVEVPILSNAECKKTAY----ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYA--NETVHHIVGVVSWGEGCAQENY  239 (260)
Q Consensus       166 ~l~~~~v~vi~~~~C~~~~~----~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~--~~~~~~L~GI~S~g~~C~~~~~  239 (260)
                      .|+++.+++++.++|+..+.    ...++++||||+...+..++|+|||||||++.  .+++|+|+||+|||.+|+.  .
T Consensus       232 ~L~~~~v~i~~~~~C~~~~~~~~~~~~~~~~~iCAg~~~~~~d~C~GDSGGPL~~~~~~~~~~~l~GIvS~G~~C~~--~  309 (329)
T 1md8_A          232 DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--G  309 (329)
T ss_dssp             BCEEEEEEBCCHHHHHHHHHHTTCCCCCCTTEEEESCTTCSCBCCTTTTTCEEEEEETTTTEEEEEEEEEECSSSSS--S
T ss_pred             cceEEEEEEcCHHHHHHHhhcccccccCCCCeEeeecCCCCCcCCCCccccceEEEECCCCcEEEEEEEEECCCcCC--C
Confidence            89999999999999987542    23578899999876566899999999999995  3589999999999999985  4


Q ss_pred             CcEEEechhhHHHHHHHhhc
Q psy8662         240 PGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       240 p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |+|||||++|++||+++|++
T Consensus       310 ~gvyT~V~~y~~WI~~~i~~  329 (329)
T 1md8_A          310 YGFYTKVLNYVDWIKKEMEE  329 (329)
T ss_dssp             CEEEEEGGGTHHHHHHHHHC
T ss_pred             CcEEEEHHHHHHHHHHHHhC
Confidence            89999999999999999874

>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG; 2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A

Probab=100.00  E-value=3e-40  Score=318.60  Aligned_cols=188  Identities=41%  Similarity=0.826  Sum_probs=138.7

Q ss_pred             CCCC-CCccCCCCCCCceeCCeeCCCCCCceEEEEEec---CeeeeeeEEEeCCEEEeccccccc---------------
Q psy8662          71 EKCG-PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVHQ---------------  131 (260)
Q Consensus        71 ~~c~-~~~cg~~~~~~ri~gG~~a~~~~~Pw~v~l~~~---~~~~C~GtLIs~~~VLTAAhCv~~---------------  131 (260)
                      ..|. ...||.. ...||+||.+|..++|||||+|+..   +.++|+||||+++||||||||+..               
T Consensus       372 r~C~~~~~Cg~~-~~~rIvgG~~a~~~~~Pw~v~L~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~  450 (625)
T 2f83_A          372 RLCKMDNECTTK-IKPRIVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILN  450 (625)
T ss_dssp             TTGGGSCSSCSC-CCSCCCSSSSCCTTSSTTEEEEEECSSSSEEEEEEEECSSSEEEECGGGGSSCCCGGGEEEEESCSB
T ss_pred             cccccccccCCC-CCCceECCEECCCCCCCeEEEEEEecCCCcEEEEEEEECCCEEEEcHHhCCCCCCCceEEEEEEecc
Confidence            3453 2367753 4679999999999999999999875   578999999999999999999843               


Q ss_pred             ---------------------------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCc
Q psy8662         132 ---------------------------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSD  165 (260)
Q Consensus       132 ---------------------------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~  165 (260)
                                                 .+||.|                  |.... ...+..++++|||.+...+..+.
T Consensus       451 ~~~~~~~~~~~~V~~ii~Hp~y~~~~~~nDIALlkL~~pv~~~~~v~PicLp~~~~~~~~~~~~~v~GWG~~~~~~~~s~  530 (625)
T 2f83_A          451 QSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQN  530 (625)
T ss_dssp             GGGCCSSCCCEEEEEEEECTTCCBTTTBCCCEEEEESSCCCCBTTBCCCBCCCGGGTTCCCCCEEECBCC------CCCS
T ss_pred             CCCCCCCceEEeEEEEEECCccCcCCccccEEEEEECCcccCCCceeeeEcCCccCCccCCCEEEEEEecCCCCCCcCCc
Confidence                                       122332                  21111 12467899999998876666678


Q ss_pred             cceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEe
Q psy8662         166 TLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYAR  245 (260)
Q Consensus       166 ~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~  245 (260)
                      .|+++.+++++.++|+..+....++++||||+...++.+.|+|||||||++..+++|+|+||+|||.+|+..+.|+||||
T Consensus       531 ~L~~~~v~i~~~~~C~~~~~~~~i~~~~iCag~~~~~~d~C~GDSGGPLv~~~~~~~~lvGIvS~G~~C~~~~~P~vyT~  610 (625)
T 2f83_A          531 TLQKAKIPLVTNEECQKRYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTN  610 (625)
T ss_dssp             BCBCCEECCCCHHHHHTTCTTSCCCTTBCCC----------CCCTTCEEEEEETTEEEEEEEEEECCC----CCCCEEEE
T ss_pred             ccEEEEEEEcCHHHHHHHhccCCCCCCeEEeecCCCCCcCCCCCcccceEEEECCeEEEEEEEEeCCCCCCCCCCeEEEE
Confidence            89999999999999998755556889999998766668999999999999998999999999999999998888999999


Q ss_pred             chhhHHHHHHHhhc
Q psy8662         246 VNRYLTWIKNNTID  259 (260)
Q Consensus       246 V~~y~~WI~~~~~~  259 (260)
                      |+.|++||+++|+.
T Consensus       611 V~~y~~WI~~~~~~  624 (625)
T 2f83_A          611 VVEYVDWILEKTQA  624 (625)
T ss_dssp             GGGGHHHHHHTC--
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999863

>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A*

Probab=100.00  E-value=2.9e-39  Score=275.37  Aligned_cols=166  Identities=32%  Similarity=0.598  Sum_probs=137.2

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||||+|+. +.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~~~~CgGsLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~~v~~~~~hp~y~~   79 (231)
T 2aiq_A            1 VIGGDECNINEHRFLALVYA-NGSLCGGTLINQEWVLTARHCDRGNMRIYLGMHNLKVLNKDALRRFPKEKYFCLNTRND   79 (231)
T ss_dssp             CBSCEECCTTSCTTEEEEEE-TTEEEEEEECSSSEEEECGGGCCSSCEEEESCSCTTSCCTTCEEECEEEEECCSSCCSS
T ss_pred             CCCCeECCCCCCCeEEEEEc-CCCeEEEEEEeCCEEEEcHHcCCCCCEEEEecccccccCCCceEEEEEEEEEECCCCCC
Confidence            68999999999999999985 568899999999999999999743                                   


Q ss_pred             ---CCCceeecc-----------------CcccCCceEEEEeeeecCCC-CCCCccceEEEEEeeChhhHhhhhcCCCCC
Q psy8662         132 ---GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAECKKTAYENRIT  190 (260)
Q Consensus       132 ---~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~-~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~  190 (260)
                         .+||.|...                 .....+..++++|||.+... ...+..|+++.+++++.++|+..+. . +.
T Consensus        80 ~~~~~DIALl~L~~~v~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~-~-~~  157 (231)
T 2aiq_A           80 TIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANINILDYAVCQAAYK-G-LA  157 (231)
T ss_dssp             STTTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCT-T-CC
T ss_pred             CCCCCCEEEEEecCCCCCCCcEEeeECCCCCCCCCCEEEEEeCCccCCCCCccCchhhhccceecchhhhhhhhc-C-CC
Confidence               113333110                 11235788999999987643 3457889999999999999988643 3 78


Q ss_pred             CCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         191 PNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       191 ~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ++|||++......+.|+|||||||++++    +|+||+||| ..|+..+.|++||||+.|++||+++++.
T Consensus       158 ~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  223 (231)
T 2aiq_A          158 ATTLCAGILEGGKDTCKGDSGGPLICNG----QFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSIISG  223 (231)
T ss_dssp             SSEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHHHHT
T ss_pred             cCcEEeccCCCCCcccCCcCCCcEEECC----EEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHcC
Confidence            8999998766678999999999999953    799999999 7898878899999999999999999874

>2xw9_A Complement factor D; immune system, hydrolase, serine protease, alternative pathw; HET: GOL; 1.20A {Homo sapiens} PDB: 2xwb_I* 1bio_A 1dfp_A* 1dic_A* 1dsu_A 1hfd_A 4d9r_A 1fdp_A 2xwa_A 1dst_A 4d9q_A

Probab=100.00  E-value=1.9e-39  Score=275.56  Aligned_cols=166  Identities=33%  Similarity=0.675  Sum_probs=136.8

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||+|+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~   80 (228)
T 2xw9_A            1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD   80 (228)
T ss_dssp             CBCC-CCCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGSSCTTCCEEEEESCSBSSSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCeECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEEcHHhCCCCCCCceEEEEcccccCCCCCcceEEEEEEEEeCCC
Confidence            689999999999999999998899999999999999999999853                                   


Q ss_pred             ------CCCcee------------------ecc-CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWV------------------TIR-GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l------------------~~~-~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            .+||.|                  +.. .....+..++++|||.+...+..+..|+++.+++++.++|++.+..
T Consensus        81 y~~~~~~~DIAll~L~~~~~~~~~v~pi~l~~~~~~~~~g~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~  160 (228)
T 2xw9_A           81 SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH  160 (228)
T ss_dssp             CCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTC-CEEEESSCCSTTCCCCSBCEEEECCEECHHHHTSTTTT
T ss_pred             CCCCCCCCcEEEEEeCCCcccCCCeeecccCCcccCCCCCCEEEEEEecccCCCCCCCchheEEEEEEcChhHhcCcccc
Confidence                  112222                  111 1123567899999998876666678899999999999999875432


Q ss_pred             -CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         187 -NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       187 -~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                       ..+.+.|||++.  ...+.|+|||||||++++    +|+||+||+. .|+..+.|++||||++|++||+++|+
T Consensus       161 ~~~~~~~~~Ca~~--~~~~~C~GDsGgPL~~~~----~l~Gi~s~g~~~C~~~~~p~vyt~V~~~~~WI~~~i~  228 (228)
T 2xw9_A          161 DGAITERLMCAES--NRRDSCKGDAGGPLVCGG----VLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TTCCCTTEEEECC--SSCBCCTTCTTCEEEETT----EEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             CCcccCCEEecCC--CCCccCCCCCcccEEECC----EEEEEEeecCCcCCCCCCCcEEEEHHHHHHHHHHHhC
Confidence             467899999984  457899999999999953    8999999998 89877889999999999999999874

>1sgf_A 7S NGF, nerve growth factor; growth factor (beta-NGF), hydrolase - serine proteinase (GAM inactive serine proteinase (alpha-NGF); HET: NAG NDG; 3.15A {Mus musculus} SCOP: b.47.1.2

Probab=100.00  E-value=4e-40  Score=282.12  Aligned_cols=170  Identities=31%  Similarity=0.620  Sum_probs=118.5

Q ss_pred             CceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------------CC-
Q psy8662          85 TRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------------GL-  133 (260)
Q Consensus        85 ~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------~~-  133 (260)
                      .||+||.++..++|||||+|+..+.++|+||||+++||||||||+..                              +| 
T Consensus         2 arIvgG~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~Hp~y~   81 (240)
T 1sgf_A            2 APPVQSQVDCENSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFN   81 (240)
T ss_dssp             -----------CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCCSCCEEEECC----C-CTTCEEEEEEEEEECTTSC
T ss_pred             CcccCCeECCCCCcCCEEEEEeCCCeEEEEEEecCCEEEECHHhCCCCceEEeCCcccccCCCCceEEEEEEEEcCCCCc
Confidence            57999999999999999999654789999999999999999999843                              11 


Q ss_pred             -----------------Cceeecc-----------------CcccCCceEEEEeeeecCCC-CCCCccceEEEEEeeChh
Q psy8662         134 -----------------GIWVTIR-----------------GKSFSNKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNA  178 (260)
Q Consensus       134 -----------------~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~-~~~~~~l~~~~v~vi~~~  178 (260)
                                       ||.|...                 .....+..++++|||.+... ...+..|+++.+++++.+
T Consensus        82 ~~~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~  161 (240)
T 1sgf_A           82 MSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNE  161 (240)
T ss_dssp             GGGC----CCTTCBCTTCCEEEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEC-------C---------CEEEEEECTH
T ss_pred             ccccccccccccCCCCCceEEEEeCCcCcCCCcccccCCCCCCCCCCCEEEEEecCCCCCCCCCCCccccEEeeeEeCHH
Confidence                             2332110                 11234678999999987643 345678999999999999


Q ss_pred             hHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         179 ECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       179 ~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +|+.. +...+++.|||++...++.+.|+|||||||++++    +|+||+||| .+|+..+.|+|||||++|++||+++|
T Consensus       162 ~C~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~GI~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~  236 (240)
T 1sgf_A          162 DCDKA-HEMKVTDAMLCAGEMDGGSYTCEHDSGGPLICDG----ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETM  236 (240)
T ss_dssp             HHHTT-CSSBCCTTEEEEEECSSSEEECCCCTTCEEEETT----EEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHH
T ss_pred             Hhhhh-hCCCcCCCeEeEccCCCCCCCCCCCCcCcEEEcc----EEEEEEEECCCCCCCCCCCeEEEeHHHHHHHHHHHH
Confidence            99875 4456789999998765667899999999999943    799999999 67988788999999999999999998


Q ss_pred             hc
Q psy8662         258 ID  259 (260)
Q Consensus       258 ~~  259 (260)
                      ++
T Consensus       237 ~~  238 (240)
T 1sgf_A          237 AN  238 (240)
T ss_dssp             HS
T ss_pred             hc
Confidence            75

>1euf_A Duodenase; serine protease, dual specificity, hydrola; HET: NAG; 2.40A {Bos taurus} SCOP: b.47.1.2

Probab=100.00  E-value=6.2e-39  Score=272.67  Aligned_cols=166  Identities=34%  Similarity=0.620  Sum_probs=135.7

Q ss_pred             eeCCeeCCCCCCceEEEEEec--C-eeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK--K-RFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~--~-~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.++..++|||||+|...  + .++|+||||+++||||||||+..                                
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y   80 (227)
T 1euf_A            1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSINVTLGAHNIMERERTQQVIPVRRPIPHPDY   80 (227)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCCEEEEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred             CCCCeECCCCCcCCEEEEEEeCCCCceEEEEEEeeCCEEEECHHHCCCCcEEEEcccccCCCCCccEEEEEEEEEeCCCC
Confidence            689999999999999999873  3 68999999999999999999843                                


Q ss_pred             -----CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+||.|                  |.... ...+..++++|||.+..+...+..|+++.+++++.++|+.. +..
T Consensus        81 ~~~~~~~DIALl~L~~~~~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~i~~~~~C~~~-~~~  159 (227)
T 1euf_A           81 NDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIAR-FKN  159 (227)
T ss_dssp             CTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTT-CTT
T ss_pred             CCCCCcCceEEEEECCcCcCCCceeccCCCCccccCCCCCEEEEEEEccCCCCCCCchhheEeEeccccHHHhhHh-hcC
Confidence                 122332                  22211 23578899999998876666678899999999999999875 445


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .++++|||++........|+|||||||++++    +|+||+|||  |+..+.|+|||||++|++||+++|+.
T Consensus       160 ~~~~~~~Ca~~~~~~~~~~~GDsGgPL~~~~----~l~Gi~S~g--c~~~~~p~vyt~V~~y~~WI~~~~~~  225 (227)
T 1euf_A          160 YIPFTQICAGDPSKRKNSFSGDSGGPLVCNG----VAQGIVSYG--RNDGTTPDVYTRISSFLSWIHSTMRR  225 (227)
T ss_dssp             CCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEEEEEEC--CTTCCSCEEEEEGGGTHHHHHHHTC-
T ss_pred             cCCCcEEEccCCCCCCcccccCCCCceEECC----EEEEEEEEe--CCCCCCCeEEEEHHHhHHHHHHHHhh
Confidence            6788999998655435678999999999953    899999999  77667899999999999999999864

>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=3.9e-39  Score=275.01  Aligned_cols=166  Identities=34%  Similarity=0.678  Sum_probs=137.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------------CC---
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------------GL---  133 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------~~---  133 (260)
                      |+||.+|..++|||||+|+. + ++|+||||+++||||||||+..                              +|   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~-~-~~CgGsLIs~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y~~~   78 (235)
T 1ton_A            1 IVGGYKCEKNSQPWQVAVIN-E-YLCGGVLIDPSWVITAAHCYSNNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPL   78 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEES-S-SEEEEEEEETTEEEECGGGCCSCCEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC
T ss_pred             CCCCEECCCCCcCcEEEEcc-C-CeEEEEEecCCEEEEcHHhCCCCcEEEeCcccccCCCCcceEEEEEEEEeCCCCccc
Confidence            68999999999999999986 4 8999999999999999999842                              11   


Q ss_pred             ---------------Cceeecc-----------------CcccCCceEEEEeeeecCCC-CCCCccceEEEEEeeChhhH
Q psy8662         134 ---------------GIWVTIR-----------------GKSFSNKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       134 ---------------~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~-~~~~~~l~~~~v~vi~~~~C  180 (260)
                                     ||.|...                 .....+..++++|||.+... ...+..|+++.+++++.++|
T Consensus        79 ~~~~~~~~~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~~~~~~~C  158 (235)
T 1ton_A           79 IVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKC  158 (235)
T ss_dssp             --------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGC
T ss_pred             ccccccccccCCCcCCEEEEEcCCccccCCcceeeeCCCCCCCCCCEEEEEecCCCCCCCCccCccceEEEEEEeCHHHH
Confidence                           2333111                 11234688999999987643 34567899999999999999


Q ss_pred             hhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       181 ~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +.. +...+++.|||++......+.|+|||||||+++.    +|+||+||| ..|+..+.|++||||++|++||+++|++
T Consensus       159 ~~~-~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~C~~~~~p~vyt~V~~~~~WI~~~~~~  233 (235)
T 1ton_A          159 IET-YKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICDG----VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKE  233 (235)
T ss_dssp             GGG-GSTTGGGGEEEEECTTCSCBCCTTCTTCEEEETT----EEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             HHH-hcCcCCCCeEeeccCCCCCcCCCCCCccccEECC----EEEEEEeeCCCCCCCCCCCeEEEEHHHHHHHHHHHHcc
Confidence            886 4456788999998765668999999999999942    799999999 5798878899999999999999999875

>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A

Probab=100.00  E-value=6.1e-39  Score=271.97  Aligned_cols=165  Identities=33%  Similarity=0.573  Sum_probs=136.5

Q ss_pred             eeCCeeCCCCCCceEEEEEecC----eeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~----~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||+++..++|||+|+|+...    .++|+||||+++||||||||+..                               
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~v~~G~~~~~~~~~~~~~~~v~~~~~hp~   80 (226)
T 4ag1_A            1 IIGGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPK   80 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECSSSSCEEEEEEEEETTEEEECGGGCCSEEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEEEcCCCcccEEEEEEEeCCEEEECcccCCCCeEEEeCCcccCCCCCcceEEEEEEEEeCCC
Confidence            6899999999999999998743    68999999999999999999843                               


Q ss_pred             ------CCCceee------------------ccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWVT------------------IRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l~------------------~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            .+||.|.                  .... ...+..++++|||.+......+..|+++.+++++.++|+.  +.
T Consensus        81 y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~--~~  158 (226)
T 4ag1_A           81 YNTSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH--FR  158 (226)
T ss_dssp             CCTTTCTTCCEEEEESSCCCCCSSSCCCCCC-----CCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECGGGGTT--ST
T ss_pred             CCCCCCcCcEEEEEECCCCccCCceeccccCCcccCCCCCCEEEEEECCCCCCCCCCCCEeEEEEEEEcChHHccc--cc
Confidence                  1233331                  1111 1357889999999887666667889999999999999984  33


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ....+.+||++......+.|+|||||||++..    +|+||+|||..|+..  |++||||++|++||+++|+.
T Consensus       159 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~~--p~vyt~v~~~~~WI~~~i~~  225 (226)
T 4ag1_A          159 DFDHNLQLCVGNPRKTKSAFKGDSGGPLLCAG----VAQGIVSYGRSDAKP--PAVFTRISHYRPWINQILQA  225 (226)
T ss_dssp             TCCTTTEEEESCTTSCCBCCTTCTTCEEEETT----EEEEEEEECBTTCCS--CEEEEEHHHHHHHHHHHHHH
T ss_pred             CcCccceEeeccCCCCCcCccCCCCCceEEcC----EEEEEEEECCCCCCC--CCEEEEhHHHHHHHHHHHhc
Confidence            34578899998766678999999999999943    899999999998764  99999999999999999874

>1elv_A Complement C1S component; trypsin-like serin protease, CCP (OR sushi or SCR)module, HY; HET: NAG FUC NES; 1.70A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1

Probab=100.00  E-value=5.3e-39  Score=288.07  Aligned_cols=181  Identities=35%  Similarity=0.725  Sum_probs=140.2

Q ss_pred             cCCCCCCccCCCC----CCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc--------------
Q psy8662          70 LEKCGPCTCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ--------------  131 (260)
Q Consensus        70 ~~~c~~~~cg~~~----~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~--------------  131 (260)
                      +..|.+ .||...    ...||+||.+|..++|||||+|.   .++|+||||+++||||||||+..              
T Consensus        63 ~~~c~~-~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~---~~~CgGsLIs~~~VLTAAHC~~~~~~~~v~~G~~~~~  138 (333)
T 1elv_A           63 LPKCVP-VCGVPREPFEEKQRIIGGSDADIKNFPWQVFFD---NPWAGGALINEYWVLTAAHVVEGNREPTMYVGSTSVQ  138 (333)
T ss_dssp             CCCEEE-CCSCCSSCC-----CBTCEECCGGGSTTEEEEE---TTEEEEEEEETTEEEECHHHHTTCSSCCEECSCSBCC
T ss_pred             cccccC-CcCCCCCcccccceeecCcccCCCCcCeEEEec---CCceeEEEecCCEEEehhheeCCCCCCeEEEeeeecc
Confidence            334543 688654    34799999999999999999994   23799999999999999999842              


Q ss_pred             -------------------C--------------CCcee------------------eccCc---ccCCceEEEEeeeec
Q psy8662         132 -------------------G--------------LGIWV------------------TIRGK---SFSNKTGIVTGWGVQ  157 (260)
Q Consensus       132 -------------------~--------------~~i~l------------------~~~~~---~~~~~~~~v~Gwg~~  157 (260)
                                         +              +||.|                  |....   ...+..++++|||.+
T Consensus       139 ~~~~~~~~v~~v~~i~~Hp~y~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~PicLp~~~~~~~~~~g~~~~v~GWG~t  218 (333)
T 1elv_A          139 TSRLAKSKMLTPEHVFIHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRT  218 (333)
T ss_dssp             -------CEECEEEEEECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCC
T ss_pred             cCccceeeeeccceEEECCCCcccccccccCCCcceEEEEEeCCCCcCCCcccceecCCCcccccccCCcEEEEEECcCc
Confidence                               1              12222                  11111   124678999999987


Q ss_pred             CCCCCCCccceEEEEEeeChhhHhhhhcC--------CCCCCCeEEeecCCCCCCCCcCCCCCceEEee--CC-eeEEEE
Q psy8662         158 KQGGSTSDTLLEVEVPILSNAECKKTAYE--------NRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN--ET-VHHIVG  226 (260)
Q Consensus       158 ~~~~~~~~~l~~~~v~vi~~~~C~~~~~~--------~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~--~~-~~~L~G  226 (260)
                      ..+ ..+..|+++.+++++.++|+..+..        ..++++||||+... +.++|+|||||||++..  ++ +|+|+|
T Consensus       219 ~~~-~~~~~L~~~~v~v~~~~~C~~~~~~~~~~~~~~~~~~~~~~Cag~~~-~~~~C~GDSGGPL~~~~~~~~~~~~l~G  296 (333)
T 1elv_A          219 EKR-DRAVRLKAARLPVAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDKTKFYAAG  296 (333)
T ss_dssp             SSC-SSCSBCEEEEEEEECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCTTCEEEEE
T ss_pred             CCC-CcCceeEEEEEEEEcHHHhhhhhhcccccccccccCCCCeECccCCC-CCCcCcCcCCCceEEEECCCCcEEEEEE
Confidence            653 3567899999999999999876432        25789999998655 58999999999999974  34 999999


Q ss_pred             EEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         227 VVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       227 I~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |+|||.+|+.   |+|||||++|++||+++|++
T Consensus       297 IvS~g~~C~~---~~vyt~V~~y~~WI~~~~~~  326 (333)
T 1elv_A          297 LVSWGPQCGT---YGLYTRVKNYVDWIMKTMQE  326 (333)
T ss_dssp             EEEECSSTTS---EEEEEEGGGGHHHHHHHHHH
T ss_pred             EEeeCCCCCC---CcEEeEHHHHHHHHHHHHhc
Confidence            9999999984   79999999999999999874

>2qy0_B Complement C1R subcomponent; serine protease, beta barrel, complement pathway like domain, glycoprotein, hydrolase, hydroxylation, immune response; 2.60A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=4e-39  Score=275.75  Aligned_cols=167  Identities=31%  Similarity=0.580  Sum_probs=136.6

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||+|+|..  .++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~--~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~~~v~~i~   78 (242)
T 2qy0_B            1 IIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVS   78 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEES--SSEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCCEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEcc--CCCEEEEEEeCCEEEEcHHhccccccccCCCceEEEEEeeccccccccccceeEEEEE
Confidence            68999999999999999975  35799999999999999999851                                   


Q ss_pred             ---CC----------Ccee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhh
Q psy8662         132 ---GL----------GIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAE  179 (260)
Q Consensus       132 ---~~----------~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~  179 (260)
                         +|          ||.|                  |.... ...+..++++|||.+...  .+..|+++.+++++.++
T Consensus        79 ~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~--~~~~L~~~~~~~~~~~~  156 (242)
T 2qy0_B           79 VHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQA  156 (242)
T ss_dssp             ECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSS--CCSBCEEEEEEBCCHHH
T ss_pred             ECCCCccCcCCCCCCcEEEEEECCCCcCCCCcceeecCCCccccCCCCeEEEEeeccCCCc--CCccceEEEEEEeCHHH
Confidence               11          3333                  21111 124678999999987643  56789999999999999


Q ss_pred             Hhhhhc----CCCCCCCeEEeecCCCCCCCCcCCCCCceEEe--eCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHH
Q psy8662         180 CKKTAY----ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYA--NETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       180 C~~~~~----~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~--~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  253 (260)
                      |+..+.    ...++++||||+......+.|+|||||||++.  .+++|+|+||+|||.+|+.  .|++||||++|++||
T Consensus       157 C~~~~~~~~~~~~~~~~~~Ca~~~~~~~~~C~GDSGgPl~~~~~~~~~~~l~Gi~S~g~~C~~--~~~vyt~V~~y~~WI  234 (242)
T 2qy0_B          157 CENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWI  234 (242)
T ss_dssp             HHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHHHH
T ss_pred             HHHHhccccccccCCCCEEeccCCCCCCccccCCCCCcEEEEECCCCeEEEEEEEEECCCcCC--CCcEEEEHHHHHHHH
Confidence            987542    23578899999876556899999999999995  4589999999999999985  489999999999999


Q ss_pred             HHHhhc
Q psy8662         254 KNNTID  259 (260)
Q Consensus       254 ~~~~~~  259 (260)
                      +++|++
T Consensus       235 ~~~~~~  240 (242)
T 2qy0_B          235 KKEMEE  240 (242)
T ss_dssp             HHHTTC
T ss_pred             HHHhhc
Confidence            999875

>1fon_A Procarboxypeptidase A-S6; truncated zymogen E, serine protease; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1pyt_C

Probab=100.00  E-value=3.2e-39  Score=276.39  Aligned_cols=169  Identities=28%  Similarity=0.602  Sum_probs=132.1

Q ss_pred             CCeeCCCCCCceEEEEEe--cC--eeeeeeEEEeCCEEEeccccccc---------------------------------
Q psy8662          89 GGQVTYVHQYPWMALLMY--KK--RFYCGATLINNLYVLTAAHCVHQ---------------------------------  131 (260)
Q Consensus        89 gG~~a~~~~~Pw~v~l~~--~~--~~~C~GtLIs~~~VLTAAhCv~~---------------------------------  131 (260)
                      ||.+|..++|||||+|+.  .+  .++|+||||+++||||||||+..                                 
T Consensus         1 gG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAhC~~~~~~~~v~~G~~~~~~~~~~~~~~~~~v~~i~~H   80 (240)
T 1fon_A            1 NGEDAVPYSWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVH   80 (240)
T ss_dssp             --------CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCTTSCEEEEEEEEETTEEEEEEEEEEECTTSEEEC
T ss_pred             CCccCCcCCcccEEEEEEecCCcEeeEEEEEEeeCCEEEECHHHCCCCCceEEEeeeeeccccCCCceeEeeeeeEEEEC
Confidence            688999999999999987  33  48999999999999999999843                                 


Q ss_pred             --------C--CCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 --------G--LGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 --------~--~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                              .  +||.|                  |.... ...+..++++|||.+..++..+..|+++.+++++.++|+.
T Consensus        81 p~y~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~  160 (240)
T 1fon_A           81 PLWNSNCVACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQ  160 (240)
T ss_dssp             TTCCTTCGGGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTS
T ss_pred             CCCcCCCccCCCCEEEEEecCccccCCcccccCCCCcccCCCCCCeEEEEEEeEcCCCCCCChhheEEEEeeeCHHHhcc
Confidence                    1  34443                  11111 1246789999999887666667889999999999999987


Q ss_pred             hh-cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         183 TA-YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       183 ~~-~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .+ ++..+++.|||++. .+ .+.|+|||||||++.. +++|+|+||+||+.  +|+..+.|+|||||+.|++||+++++
T Consensus       161 ~~~~~~~~~~~~~Ca~~-~~-~~~C~GDsGgPL~~~~~~~~~~l~Gi~S~g~~~~C~~~~~p~vyt~V~~~~~WI~~~~~  238 (240)
T 1fon_A          161 WDWWGITVKKTMVCAGG-DT-RSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIA  238 (240)
T ss_dssp             TTTTGGGCCTTEEEECC-SS-SCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHH
T ss_pred             ceecCCccccceEeecC-CC-CcccCCCCCCeEEeEcCCCCEEEEEEEEEcCCCCCCCCCCCcEEEEhHHHHHHHHHHHh
Confidence            53 23357889999984 33 7899999999999976 78999999999996  89877789999999999999999987


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      +
T Consensus       239 ~  239 (240)
T 1fon_A          239 S  239 (240)
T ss_dssp             H
T ss_pred             c
Confidence            5

>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A

Probab=100.00  E-value=5.8e-39  Score=315.24  Aligned_cols=183  Identities=38%  Similarity=0.715  Sum_probs=151.6

Q ss_pred             CccCCCCC-----CCceeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc------------------
Q psy8662          76 CTCGAVNK-----KTRIVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ------------------  131 (260)
Q Consensus        76 ~~cg~~~~-----~~ri~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~------------------  131 (260)
                      ..||....     ..||+||.+|..++|||||+|+.. +.++|+||||+++||||||||+..                  
T Consensus       546 ~~CG~~~~~~~~~~~RIvGG~~a~~~~~PW~VsL~~~~~~~~CGGSLIs~~wVLTAAHCv~~~~~~~~~~V~lG~~~~~~  625 (791)
T 4dur_A          546 FDCGKPQVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVN  625 (791)
T ss_dssp             CCTTCCSSCCCCCCTTCTTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGGSSCCCGGGCEEEESCCBSSS
T ss_pred             cCcCCcccccccCCCceECCEECCCCCCCeEEEEEecCCCeEEEEEEEeCCEEEECHHHcCCcCCCceEEEEeccccccC
Confidence            36886542     369999999999999999999875 689999999999999999999853                  


Q ss_pred             ------------------CCCcee------------------eccC-cccCCceEEEEeeeecCCCCCCCccceEEEEEe
Q psy8662         132 ------------------GLGIWV------------------TIRG-KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPI  174 (260)
Q Consensus       132 ------------------~~~i~l------------------~~~~-~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~v  174 (260)
                                        .+||.|                  |... ....+..++++|||.+.. +..+..|+++.+++
T Consensus       626 ~~~~~q~~~V~~i~~hp~~nDIALLkL~~pv~~s~~V~PIcLP~~~~~~~~g~~~~vsGWG~t~~-~~~s~~L~~~~v~i  704 (791)
T 4dur_A          626 LEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGAGLLKEAQLPV  704 (791)
T ss_dssp             CCTTCEEEEEEEEEECTTCCSCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCCC----CCTTBCEEEEEEE
T ss_pred             CCCccEEEEEEEEECCCCCCceEEEEecCccccCCceeeeeccCcccccCCCCEEEEEEeCCCCC-CCCCCeeEEEEEEE
Confidence                              123333                  1111 122467899999998763 34567899999999


Q ss_pred             eChhhHhhh-hcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHH
Q psy8662         175 LSNAECKKT-AYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       175 i~~~~C~~~-~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  253 (260)
                      ++.+.|+.. +....++++||||+...++.++|+|||||||++..+++|+|+||+|||.+|+..+.|+|||||+.|++||
T Consensus       705 i~~~~C~~~~~~~~~i~~~~iCAg~~~gg~daC~GDSGGPLv~~~~~~~~LvGIvS~G~gC~~~~~PgVYTrVs~y~dWI  784 (791)
T 4dur_A          705 IENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWI  784 (791)
T ss_dssp             ECHHHHTSTTTTTTCCCTTEEEESCSSSCCCBCCSCTTCEEEEEETTEEEEEEECCTTTCCBBTTBCEEEEEGGGTHHHH
T ss_pred             eCHHHhhcccccCCCCCCCeEEeccCCCCCCCCCCCcccceEEEeCCeEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHH
Confidence            999999875 3345789999999877777899999999999999999999999999999999888999999999999999


Q ss_pred             HHHhhc
Q psy8662         254 KNNTID  259 (260)
Q Consensus       254 ~~~~~~  259 (260)
                      +++|++
T Consensus       785 ~~~i~~  790 (791)
T 4dur_A          785 EGVMRN  790 (791)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            999975

>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2

Probab=100.00  E-value=4.7e-39  Score=273.35  Aligned_cols=164  Identities=37%  Similarity=0.712  Sum_probs=135.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~hp~y~   80 (226)
T 1azz_A            1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDVVLGAHNIREDEATQVTIQSTDFTVHENYN   80 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTTCSCEEEEESCSBSSSCCTTCEEEEECCEEECTTCB
T ss_pred             CCCCEECCCCCcCCEEEEEECCcEEEEEEEecCCEEEEhHHhcCCCCceEEEEcceEcCCCCCccEEEEEEEEEECCCCC
Confidence            689999999999999999988889999999999999999999853                                   


Q ss_pred             ----CCCcee------------------eccCcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCC
Q psy8662         132 ----GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENR  188 (260)
Q Consensus       132 ----~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~  188 (260)
                          .+||.|                  +... ...+..++++|||.+...+ ..+..|+++.+++++.++|+..+ . .
T Consensus        81 ~~~~~~DiALl~L~~~~~~~~~v~picL~~~~-~~~~~~~~v~GwG~~~~~~~~~~~~L~~~~~~i~~~~~C~~~~-~-~  157 (226)
T 1azz_A           81 SFVISNDIAVIRLPVPVTLTAAIATVGLPSTD-VGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY-G-I  157 (226)
T ss_dssp             TTTTBSCCEEEECSSCCCCCSSSCCCBCCSSC-CCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHH-S-C
T ss_pred             CCCCCCceEEEEECCccccCCCcccccCCCCC-CCCCCEEEEEeCCccCCCCCCCCchhEEeeEEEEChhHhhhhh-C-c
Confidence                122333                  2111 2457889999999876533 45778999999999999999864 3 5


Q ss_pred             CCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         189 ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       189 i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ++++|||++. ....+.|+|||||||+++.    +|+||+|||.  +|.. +.|++||||++|++||+++++.
T Consensus       158 ~~~~~~Ca~~-~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~~~~C~~-~~p~vyt~V~~~~~WI~~~~~~  224 (226)
T 1azz_A          158 VTDGNICIDS-TGGKGTCNGDSGGPLNYNG----LTYGITSFGAAAGCEA-GYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             CCTTEEEECC-TTTCBCCTTCTTCEEEETT----EEEEEEEEEETTCTTS-CCCEEEEESGGGHHHHHHHHCC
T ss_pred             CCCceEeecC-CCCCccCCCCCCcceEECC----EEEEEEEEECCCCCCC-CCCCEEEEHHHHHHHHHHHhCC
Confidence            7899999985 3457899999999999632    8999999997  6764 7899999999999999999864

>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2

Probab=100.00  E-value=6.3e-39  Score=271.35  Aligned_cols=164  Identities=34%  Similarity=0.562  Sum_probs=136.2

Q ss_pred             eeCCeeCCCCCCceEEEEEecC----eeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~----~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||.++..++|||+|+|+...    .++|+||||+++||||||||+..                               
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLI~~~~VLTAAhC~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~hp~   80 (224)
T 3rp2_A            1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREITVILGAHDVRKRESTQQKIKVEKQIIHES   80 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCCSEEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCcEEEEEeEEeeCCEEEEchhcCCCCcEEEEeccccCcCCCCcEEEEEEEEEECCC
Confidence            6899999999999999998754    68999999999999999999743                               


Q ss_pred             ------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            .+||.|                  +.... ...+..++++|||.+...+..+..|+++.+++++.++|+.  +.
T Consensus        81 y~~~~~~~DIALl~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~--~~  158 (224)
T 3rp2_A           81 YNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVD--YR  158 (224)
T ss_dssp             CCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTT--TT
T ss_pred             ccCCCCCccEEEEEcCCCcccCCcccceecCCcccCCCCCCEEEEEeCCCCCCCCCCCceeeEeeeeecChHHhcc--cc
Confidence                  123333                  11111 1357889999999887665567789999999999999986  33


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ....+.+||++......+.|+|||||||++..    +|+||+|||..|+..  |++||||+.|++||+++|+
T Consensus       159 ~~~~~~~~Ca~~~~~~~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~~--p~vyt~v~~y~~WI~~~i~  224 (224)
T 3rp2_A          159 YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCAG----VAHGIVSYGHPDAKP--PAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             CCCTTTEEEECCTTSCCBCCTTTTTCEEEETT----EEEEEEEECCTTCCS--CEEEEEHHHHHHHHHHHHC
T ss_pred             ccCcCCEEEecCCCCCCeeccCCCCCeEEEcc----eeeEEEEECCCCCCC--CcEEEEHHHhHHHHHHHhC
Confidence            44578899998777678999999999999954    899999999998764  9999999999999999874

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.7e-39  Score=283.94  Aligned_cols=173  Identities=18%  Similarity=0.410  Sum_probs=130.4

Q ss_pred             CCccCCCCCCCceeCCeeCCCCCCceEEEEEe-cCeeeeeeEEEeCCEEEeccccccc----------------------
Q psy8662          75 PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVHQ----------------------  131 (260)
Q Consensus        75 ~~~cg~~~~~~ri~gG~~a~~~~~Pw~v~l~~-~~~~~C~GtLIs~~~VLTAAhCv~~----------------------  131 (260)
                      .|.||.....     |..+..++|||||+|+. .+.++|+||||+++||||||||+..                      
T Consensus        46 ~c~CG~~~~~-----g~~a~~~~~Pw~v~l~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~v  120 (283)
T 3f1s_B           46 QCACGVLTSE-----KRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKI  120 (283)
T ss_dssp             TTCTTCCCC-------------CCTTEEEEECTTSCEEEEEEEEETTEEEECHHHHTSCSSCEEEECTTC-CCCCEEEEE
T ss_pred             ccccCccccC-----CccccccccCCEEEEEecCCCeeeccEEecCCEEEEcHHhcCccCceEEEEeeeeCCCCcEEEEe
Confidence            5789875543     89999999999999987 5689999999999999999999853                      


Q ss_pred             --------------CCCcee------------------eccC----cccCCceEEEEeeeecCCCCCCCccceEEEEEee
Q psy8662         132 --------------GLGIWV------------------TIRG----KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPIL  175 (260)
Q Consensus       132 --------------~~~i~l------------------~~~~----~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi  175 (260)
                                    .+||.|                  |...    ....+..++++|||.  ..+..+..|+++.++++
T Consensus       121 ~~i~~Hp~y~~~~~~nDIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~  198 (283)
T 3f1s_B          121 THVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLV  198 (283)
T ss_dssp             EEEEECTTCBTTTTBTCCEEEEESSCCCTTTTCCCCBCCCHHHHHHTTTTTSCEEEEECBC--C-------CEEEEEEEE
T ss_pred             EEEEECCCCCCCCCCCCEEEEEeCCcccCCCCEEeEECCCCccccccccCCCEEEEEECCC--CCCCCCceeeEEEEeEe
Confidence                          123333                  2211    123578899999998  34456788999999999


Q ss_pred             ChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHH
Q psy8662         176 SNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       176 ~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      +.++|+.. +...++++||||+...   ..|.+||||||++..+++|+|+||+||+. |+..+.|+|||||++|++||++
T Consensus       199 ~~~~C~~~-~~~~~~~~~~Ca~~~~---~~~~gDSGgPlv~~~~~~~~l~GIvS~g~-c~~~~~p~vyt~V~~y~~WI~~  273 (283)
T 3f1s_B          199 EGEECGQV-LNVTVTTRTYCERSSV---AAMHWMDGSVVTREHRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQ  273 (283)
T ss_dssp             CHHHHHHH-HTSCCCTTEEEEECSS---CGGGBCTTCEEEEECSSCEEEEEEECCCS-GGGCSSEEEEEEGGGGHHHHHH
T ss_pred             CHHHHhhh-hcCCCCCCeEcccCCC---CCCCCCCCCcEEEEECCEEEEEEEEEeCC-CCCCCcceEEEEhHHhHHHHHH
Confidence            99999986 4567899999997543   24577999999999889999999999986 7666789999999999999999


Q ss_pred             Hhhc
Q psy8662         256 NTID  259 (260)
Q Consensus       256 ~~~~  259 (260)
                      +|++
T Consensus       274 ~~~~  277 (283)
T 3f1s_B          274 IMNA  277 (283)
T ss_dssp             HHTC
T ss_pred             Hhhc
Confidence            9975

>1cgh_A Cathepsin G; inflammation, specificity, serine protease, hydrolase-hydrol inhibitor complex; HET: 1ZG; 1.80A {Homo sapiens} SCOP: b.47.1.2 PDB: 1au8_A* 1t32_A* 1kyn_A*

Probab=100.00  E-value=2.1e-38  Score=268.86  Aligned_cols=165  Identities=31%  Similarity=0.543  Sum_probs=133.5

Q ss_pred             eeCCeeCCCCCCceEEEEEec--C-eeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK--K-RFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~--~-~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.++..++|||||+|+..  + .++|+||||+++||||||||+..                                
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGsLI~~~~VLTAAHC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~Hp~y   80 (224)
T 1cgh_A            1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQY   80 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESTTTTSCEEEEEEEETTEEEECGGGCCSSEEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCCCcEEEEEEECCCCCeEEEEEEeeCCEEEEhHHhCCCCCEEEEeecccCCCCCccEEEEEEEEEcCCCC
Confidence            689999999999999999874  3 48999999999999999999843                                


Q ss_pred             -----CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+||.|                  |.... ...+..++++|||.+. .+..+..|+++.+++++.++|+..+ ..
T Consensus        81 ~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~-~~~~~~~l~~~~~~i~~~~~C~~~~-~~  158 (224)
T 1cgh_A           81 NQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVS-MRRGTDTLREVQLRVQRDRQCLRIF-GS  158 (224)
T ss_dssp             BTTTTBSCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESCCSS-SSCCCSBCEEEEEEBCCHHHHHHHC-TT
T ss_pred             CCCCCcCCEEEEEECCCCcCCCceEeeECCCCCCCCCCCCEEEEEECCcCC-CCCCCCcceEEEEEeeCHHHHHHHh-Cc
Confidence                 122332                  22221 2357889999999877 4455778999999999999999864 44


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ...+.|||++...+..+.|+|||||||++++    +|+||+|||. |. ...|++||||+.|++||+++|+.
T Consensus       159 ~~~~~~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~S~g~-~~-~~~p~vyt~V~~~~~WI~~~~~s  224 (224)
T 1cgh_A          159 YDPRRQICVGDRRERKAAFKGDSGGPLLCNN----VAHGIVSYGK-SS-GVPPEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             CCTTTEEEECCTTSCCBCCTTCTTCEEEETT----EEEEEEEECC-TT-CCSCEEEEEGGGGHHHHHHHHHC
T ss_pred             CCCcceEeeccCCCCCeEeeCCCccceEEcc----EEEEEEEEEC-CC-CCCCeEEEEHHHhHHHHHHHhhC
Confidence            4456699998766568999999999999953    8999999998 33 34699999999999999999863

>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A*

Probab=100.00  E-value=2.9e-38  Score=267.91  Aligned_cols=158  Identities=29%  Similarity=0.590  Sum_probs=132.8

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||+|+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~V~~G~~~~~~~~~~~~~~~~v~~i~~h~   80 (225)
T 1a7s_A            1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENG   80 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSS
T ss_pred             CCCCEECCCCCCCcEEEEecCCCcEEEEEEeeCCEEEEchhccCCCCCCceEEEEeeeECCCCCCcceeEEeEEEEeccc
Confidence            689999999999999999998899999999999999999999843                                   


Q ss_pred             ------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            .+||.|                  +.... ...+..++++|||.+...+..+..|+++.+++++.++|+.    
T Consensus        81 y~~~~~~~DIALl~L~~~~~~~~~v~pi~L~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~~~~~C~~----  156 (225)
T 1a7s_A           81 YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRP----  156 (225)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCT----
T ss_pred             ccCCCCcCCEEEEEcCCcccCCCceeEEEcCCCcCCCCCCCEEEEEeCCcCCCCCCcccccceeeeEECCHHHhcc----
Confidence                  012222                  11111 1356789999999887666677889999999999999975    


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                           +|||++......+.|+|||||||++.+    +|+||+||| ..|+..  |++||||+.|++||++++++
T Consensus       157 -----~~~Ca~~~~~~~~~C~GDSGgPl~~~g----~l~Gi~S~g~~~C~~~--p~vyt~V~~~~~WI~~~~~~  219 (225)
T 1a7s_A          157 -----NNVCTGVLTRRGGICNGDGGTPLVCEG----LAHGVASFSLGPCGRG--PDFFTRVALFRDWIDGVLNN  219 (225)
T ss_dssp             -----TEEEEECSSSSCBCCTTCTTCEEEETT----EEEEEEEEECSSTTSS--CEEEEEGGGGHHHHHHHHHS
T ss_pred             -----CceEEeccCCCCCcccCCCcchheeCC----EEEEEEEEccCCcCCC--CcEEEEhHHhHHHHHHHhcC
Confidence                 699998766668999999999999973    899999999 678764  99999999999999999875

>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0

Probab=100.00  E-value=1.2e-38  Score=270.17  Aligned_cols=165  Identities=23%  Similarity=0.420  Sum_probs=137.3

Q ss_pred             eCCeeCCCCCCceEEEEEecCe--e-eeeeEEEeCCEEEeccccccc---------------------------------
Q psy8662          88 VGGQVTYVHQYPWMALLMYKKR--F-YCGATLINNLYVLTAAHCVHQ---------------------------------  131 (260)
Q Consensus        88 ~gG~~a~~~~~Pw~v~l~~~~~--~-~C~GtLIs~~~VLTAAhCv~~---------------------------------  131 (260)
                      .||.++..++|||+|+|+..+.  + +|+||||+++||||||||+..                                 
T Consensus         1 ~gG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~i~~h~   80 (228)
T 3h7o_A            1 KGGEKTDIKQVPWTVAVRTYPGEESLTCGGAILSQWFVLTAAHCVFDQKPETIVIQYESTNLWEDPGKSDPYVSHVYLSF   80 (228)
T ss_dssp             CCCEECCGGGSTTEEEEEECGGGCCEEEEEEESSSSEEEECHHHHTTSCGGGCEEEESCSBTTTBCCEEECCEEEEEESS
T ss_pred             CCCccCCcCCCCeEEEEeecCCCCceEeeeEEeeCCEEEEcHHhcccCCCCcEEEEecccccccCCCceeeeEEEEEccc
Confidence            4899999999999999988653  4 999999999999999999842                                 


Q ss_pred             ------CCCcee-------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhc
Q psy8662         132 ------GLGIWV-------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY  185 (260)
Q Consensus       132 ------~~~i~l-------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~  185 (260)
                            .+||.|                   +.... ...+..++++|||.+...+..+..|+++.+++++.++|+..+.
T Consensus        81 y~~~~~~~DIALl~L~~~v~~~~~~v~pi~lp~~~~~~~~~~~~~v~GwG~~~~~~~~~~~L~~~~~~~~~~~~C~~~~~  160 (228)
T 3h7o_A           81 YRQETMENDIAILELSRPLKLDGLKSKPAKLPDIEFRPKTGSDVLVSGYGDGQTMDPKDHDLKSAQLTVVDLDECRTKYG  160 (228)
T ss_dssp             CBTTTTBTCCEEEEESSCCCCCSSSSCCCBCCCTTCCCCTTCEEEEEECCCSSCSCGGGGBCEEEEEEEECHHHHHHHHT
T ss_pred             cCCCCccCCEEEEEECCcccccccccccccCCccccCCCCCCeeEEEEEecCCCCCCcccccccceeEEEcHHHHHHHhc
Confidence                  123333                   11111 2356789999999887766667889999999999999998765


Q ss_pred             CCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         186 ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       186 ~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ...++++|||++...  .+.|+|||||||+++.    .|+||+||+..|.. +.|++||||+.|++||+++|++
T Consensus       161 ~~~~~~~~~Ca~~~~--~~~C~GDsGgPl~~~~----~l~Gi~S~g~~c~~-~~p~vyt~v~~~~~WI~~~i~~  227 (228)
T 3h7o_A          161 PIFLSLQVFCAQKVG--VSLESGDAGDPTVQQD----TLVGVAAYFPKRPE-GAPEVFTKVGSYVSWIQDIIKK  227 (228)
T ss_dssp             TSCCCSSEEEEECTT--CCCCGGGTTCEEEETT----EEEEEECCCTTCCT-TCCEEEEEGGGTHHHHHHHHTT
T ss_pred             CccCCceEEecCCCC--CcCCCCCCCCcceecC----eEEEEEeecCcCCC-CCCcEEEEHHHHHHHHHHHhhc
Confidence            556889999998543  7899999999999954    59999999999987 7899999999999999999975

>1gpz_A Complement C1R component; hydrolase, activation, innate immunity, modular structure, serine protease; HET: NAG FUC MAN; 2.9A {Homo sapiens} SCOP: b.47.1.2 g.18.1.1 g.18.1.1

Probab=100.00  E-value=1.4e-38  Score=291.72  Aligned_cols=177  Identities=30%  Similarity=0.584  Sum_probs=136.0

Q ss_pred             ccCCCC----CCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc---------------------
Q psy8662          77 TCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ---------------------  131 (260)
Q Consensus        77 ~cg~~~----~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~---------------------  131 (260)
                      .||...    ...||+||.+|..++|||||+|...  ++|+||||+++||||||||+..                     
T Consensus       144 ~CG~~~~~~~~~~rIvgG~~a~~~~~Pw~v~l~~~--~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~~~~~v~~G~~~~~  221 (399)
T 1gpz_A          144 VCGKPVNPVEQRQQIIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVE  221 (399)
T ss_dssp             CCSCCSSCCCSSCCCCSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECGGGTSCTTC-----CCCEEEESCSBHH
T ss_pred             CCCCcCCcccCCCEEECCEECCCCCCCCEEEECCC--CCeEEEEeCCCEEEeChhcccccccccCCcceEEEEecccccc
Confidence            577642    3579999999999999999998643  4799999999999999999842                     


Q ss_pred             -----------------CC----------Ccee------------------eccCcc-cCCceEEEEeeeecCCCCCCCc
Q psy8662         132 -----------------GL----------GIWV------------------TIRGKS-FSNKTGIVTGWGVQKQGGSTSD  165 (260)
Q Consensus       132 -----------------~~----------~i~l------------------~~~~~~-~~~~~~~v~Gwg~~~~~~~~~~  165 (260)
                                       +|          ||.|                  |..... ..+..++++|||.+..  ..+.
T Consensus       222 ~~~~~~~~~v~~i~~Hp~y~~~~~~~~~~DIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~v~GwG~~~~--~~~~  299 (399)
T 1gpz_A          222 ELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEE--KIAH  299 (399)
T ss_dssp             HHHHTCCCCEEEEEECSSCCSSSSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECC-------CCS
T ss_pred             ccccccccceEEEEECCCCCcCCCCCCCCcEEEEEECCcCcCCCceeeeecCCCccccCCCCEEEEEccCCCCC--ccCc
Confidence                             11          3333                  211111 2467899999998764  3467


Q ss_pred             cceEEEEEeeChhhHhhhhcC----CCCCCCeEEeecCCCCCCCCcCCCCCceEEee--CCeeEEEEEEeeCCCCCCCCC
Q psy8662         166 TLLEVEVPILSNAECKKTAYE----NRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENY  239 (260)
Q Consensus       166 ~l~~~~v~vi~~~~C~~~~~~----~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~~~~  239 (260)
                      .|+++.+++++.++|+..+..    ..++++||||+...+..++|+|||||||++..  +++|+|+||+|||.+|+.  .
T Consensus       300 ~L~~~~~~i~~~~~C~~~~~~~~~~~~~~~~~~Cag~~~~~~d~C~GDSGGPl~~~~~~~~~~~l~GivS~g~~C~~--~  377 (399)
T 1gpz_A          300 DLRFVRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--G  377 (399)
T ss_dssp             BCEEEEEEEECHHHHHC-----------CCSEEEEECGGGGGGGGCSCSSCEEEEEETTTTEEEEEEEECCCTTTTT--T
T ss_pred             cceEEEEEEcCHHHhhhhhhcccccCcCCCCeEecccCCCCCccCCCCCchHeEEEECCCCeEEEEEEEEeCCCcCC--C
Confidence            899999999999999875422    24788999998765568999999999999875  589999999999999985  3


Q ss_pred             CcEEEechhhHHHHHHHhhc
Q psy8662         240 PGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       240 p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |+|||||++|++||+++|++
T Consensus       378 ~~vyt~V~~y~~WI~~~~~~  397 (399)
T 1gpz_A          378 YGFYTKVLNYVDWIKKEMEE  397 (399)
T ss_dssp             EEEEEEGGGGHHHHHHHTC-
T ss_pred             CeEEEEhHHhHHHHHHHhcc
Confidence            89999999999999999975

>2hlc_A Collagenase; serine protease, hydrolase, collagen degradation; 1.70A {Hypoderma lineatum} SCOP: b.47.1.2 PDB: 1hyl_A

Probab=100.00  E-value=4.4e-38  Score=267.68  Aligned_cols=166  Identities=32%  Similarity=0.605  Sum_probs=135.2

Q ss_pred             eeCCeeCCCCCCceEEEEEe----cCeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~----~~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||.+|..++|||+|+|+.    .+.++|+||||+++||||||||+..                               
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~v~~G~~~~~~~~~~~~v~~i~~hp~y   80 (230)
T 2hlc_A            1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMF   80 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTTEEEEEEEESCSBTTCCSEEEECSEEEECTTC
T ss_pred             CCCCeECCCCCCCcEEEEEEEecCCCCEEEEEEEeeCCEEEECHHHCCCCcceEEEEeeeecCCCCeEEEEEEEEECCCC
Confidence            68999999999999999987    4678999999999999999999853                               


Q ss_pred             -----CCCcee-----------------eccC---cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 -----GLGIWV-----------------TIRG---KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 -----~~~i~l-----------------~~~~---~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                           .+||.|                 |...   ....+..++++|||.+....   ..|+++.+++++.++|+..+..
T Consensus        81 ~~~~~~~DiALl~L~~~~~~~~v~picLp~~~~~~~~~~~~~~~v~GwG~~~~~~---~~l~~~~~~~~~~~~C~~~~~~  157 (230)
T 2hlc_A           81 NPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSNTDT---VILQYTYNLVIDNDRCAQEYPP  157 (230)
T ss_dssp             BTTTTBTCCEEEECSCCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCSSCC---CBCEEEEEEEECHHHHHTTSCT
T ss_pred             CCCCccccEEEEEecCCCcCCcEeeeEcCCccccccccCCcEEEEEeeeecCCCC---ceeEEEEEEEeCHHHhhhhhCC
Confidence                 122332                 2211   12356789999999876432   6799999999999999986544


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ..+.++|||++.. .+.+.|+|||||||++..  .++|+||+||+.  +|. .+.|++||||++|++||+++++.
T Consensus       158 ~~~~~~~~Ca~~~-~~~~~C~GDSGgPl~~~~--~~~l~Gi~S~g~~~~C~-~~~p~vyt~V~~~~~WI~~~~~~  228 (230)
T 2hlc_A          158 GIIVESTICGDTS-DGKSPCFGDSGGPFVLSD--KNLLIGVVSFVSGAGCE-SGKPVGFSRVTSYMDWIQQNTGI  228 (230)
T ss_dssp             TSSCTTEEEECCT-TSCBCCTTCTTCEEEEGG--GTEEEEEEEECCTTCTT-SCCCEEEEEGGGGHHHHHHHHCC
T ss_pred             CcccCCeEEecCC-CCCCcCCCCCCCeeEECc--CCEEEEEEEEeCCCCCC-CCCCCEEEEhHHhHHHHHHhhCc
Confidence            4688999999764 347899999999999865  358999999987  674 56899999999999999999874

>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A*

Probab=100.00  E-value=3e-38  Score=266.77  Aligned_cols=157  Identities=31%  Similarity=0.637  Sum_probs=132.3

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..++|||||+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGtLI~~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~h~y   80 (218)
T 2z7f_E            1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY   80 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEESCC
T ss_pred             CCCCEECCCCccCcEEEEEeCCCcEEEEEEccCCEEEEcHHhcCCCCcCcEEEEEeceecCCCCCceEEEEEEEEEccCC
Confidence            689999999999999999999899999999999999999999853                                   


Q ss_pred             -----CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+||.|                  +.... ...+..++++|||.+...+..+..|+++.++++ .+.|+..    
T Consensus        81 ~~~~~~~DIALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~v~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~~~----  155 (218)
T 2z7f_E           81 DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVV-TSLCRRS----  155 (218)
T ss_dssp             BTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEE-CTTCCTT----
T ss_pred             CCCCCCCCEEEEEECCcCcCCCceeccCcCCCCCCCCCCCEEEEEEeCCCCCCCCccchheEeeeEEe-hhHcCcc----
Confidence                 012322                  21111 125678999999988766666788999999999 8999763    


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEee--CCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW--GEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~--g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                           |||++......+.|+|||||||+++.    +|+||+||  +. |+..+.|++||||+.|++||+++|+
T Consensus       156 -----~~Ca~~~~~~~~~C~GDSGgPl~~~~----~l~Gi~S~~~g~-C~~~~~p~vyt~V~~~~~WI~~~~~  218 (218)
T 2z7f_E          156 -----NVCTLVRGRQAGVCFGDSGSPLVCNG----LIHGIASFVRGG-CASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             -----SEEEECTTSCCBCCTTCTTCEEEETT----EEEEEEEEESSS-TTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             -----eeeeccCCCCCeeCCCcCCCceEEcc----EEEEEEEeCCcc-CCCCCCCeEEEEHHHhHHHHHHHhC
Confidence                 89998766568999999999999853    89999999  66 9877789999999999999999874

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=100.00  E-value=1.2e-38  Score=304.22  Aligned_cols=180  Identities=37%  Similarity=0.678  Sum_probs=107.8

Q ss_pred             ccCCCC----CCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc---------------------
Q psy8662          77 TCGAVN----KKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ---------------------  131 (260)
Q Consensus        77 ~cg~~~----~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~---------------------  131 (260)
                      .||...    ...||+||.+|..++|||||+|+..+.++|+||||+++||||||||+..                     
T Consensus       308 ~CG~~~~~~~~~~rIvgG~~a~~g~~Pw~v~l~~~~~~~CGGsLIs~~~VLTAAHCv~~~~~~~~~V~~G~~~~~~~~~~  387 (565)
T 2xrc_A          308 SCGVKNRMHIRRKRIVGGKRAQLGDLPWQVAIKDASGITCGGIYIGGCWILTAAHCLRASKTHRYQIWTTVVDWIHPDLK  387 (565)
T ss_dssp             CCCC--------------------CCTTBCEEEESSSCCCCCEEEETTEEEECHHHHTTCSSCCEEEEC-----------
T ss_pred             ccCCCCCcccCCCceECCEECCCCCCCcEEEEecCCceeeeEEEEeCCEEEEChhhcccCCCcceEEEEEEeeccCCCCC
Confidence            567543    3579999999999999999999988889999999999999999999843                     


Q ss_pred             ---------------------CCCceeecc----------------------Cc-ccCCceEEEEeeeecCCCCCCCccc
Q psy8662         132 ---------------------GLGIWVTIR----------------------GK-SFSNKTGIVTGWGVQKQGGSTSDTL  167 (260)
Q Consensus       132 ---------------------~~~i~l~~~----------------------~~-~~~~~~~~v~Gwg~~~~~~~~~~~l  167 (260)
                                           .+||.|...                      .. ...+..++++|||.+..+ ..+..|
T Consensus       388 ~~~~~~V~~ii~Hp~Y~~~~~~nDIALlkL~~~v~~~~~~~~~v~PicLp~~~~~~~~g~~~~v~GWG~t~~~-~~~~~L  466 (565)
T 2xrc_A          388 RIVIEYVDRIIFHENYNAGTYQNDIALIEMKKDGNKKDCELPRSIPACVPWSPYLFQPNDTCIVSGWGREKDN-ERVFSL  466 (565)
T ss_dssp             --CEEEEEEEEECTTCCTTTCTTCCEEEEECCCSSSSCSCCTTCCCCBCCSCTTSSCTTCEEEEEC--------------
T ss_pred             ccEEEEEEEEEeCCCCCCCcccccceeeeeccccccccccccceeeeecCCcccccCCCCEEEEEeCccCCCC-Ccccee
Confidence                                 123333111                      11 124678999999987653 356789


Q ss_pred             eEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCCCCCCCCCCcEEEec
Q psy8662         168 LEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARV  246 (260)
Q Consensus       168 ~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~~C~~~~~p~vyt~V  246 (260)
                      +++.+++++.  |+..+....+...||||+...+..++|+|||||||++.. +++|+|+||+|||.+|+..+.|+|||||
T Consensus       467 ~~~~v~i~~~--C~~~~~~~~~~~~~iCAg~~~g~~d~C~GDSGGPLv~~~~~~~~~lvGIvS~G~~C~~~~~PgVYTrV  544 (565)
T 2xrc_A          467 QWGEVKLISN--CSKFYGNRFYEKEMECAGTYDGSIDACKGDSGGPLVCMDANNVTYVWGVVSWGENCGKPEFPGVYTKV  544 (565)
T ss_dssp             CEEEEEECSC--THHHHTTSCCTTTEEEEEEC----------CCCEEEEECTTCCEEEEEEECC------CCCCEEEEEG
T ss_pred             eEEeeeehHH--hHHhhccCcCCCceEEeCCCCCCCccCCCccccceEEEeCCCcEEEEEEEeeCCCCCCCCCCEEEEEH
Confidence            9999999984  987643333445599999776668999999999999975 6899999999999999988899999999


Q ss_pred             hhhHHHHHHHhhc
Q psy8662         247 NRYLTWIKNNTID  259 (260)
Q Consensus       247 ~~y~~WI~~~~~~  259 (260)
                      ++|++||+++|+.
T Consensus       545 s~y~~WI~~~i~~  557 (565)
T 2xrc_A          545 ANYFDWISYHVGR  557 (565)
T ss_dssp             GGGHHHHHHHC--
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999864

>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens}

Probab=100.00  E-value=2.6e-37  Score=275.14  Aligned_cols=172  Identities=19%  Similarity=0.409  Sum_probs=139.4

Q ss_pred             CCccCCCCCCCceeCCeeCCCCCCceEEEEEe-cCeeeeeeEEEeCCEEEeccccccc----------------------
Q psy8662          75 PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVHQ----------------------  131 (260)
Q Consensus        75 ~~~cg~~~~~~ri~gG~~a~~~~~Pw~v~l~~-~~~~~C~GtLIs~~~VLTAAhCv~~----------------------  131 (260)
                      .+.||....     .|..+..++|||||+|+. .+.++|+||||+++||||||||+..                      
T Consensus        87 ~c~cg~~~~-----~G~~a~~~~~Pw~v~l~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~V~~G~~~~~~~~~~~~v  161 (317)
T 3h5c_B           87 QCACGVLTS-----EKRAPDLQDLPWQVKLTNSEGKDFCGGVIIRENFVLTTAKCSLLHRNITVKTYFNRTSQDPLMIKI  161 (317)
T ss_dssp             SCCCCCCSC-----CCSSCCTTCCTTEEEEECSSSCEEEEEEEEETTEEEECHHHHHSCSSCEEEECTTSCTTSCEEEEE
T ss_pred             ccccccccc-----ccccCccCCCCcEEEEeccCCceeeeeEEeeCCEEEEChHhcCcCCceEEEEeeecCCCCcEEEEe
Confidence            456665432     388999999999999987 5689999999999999999999843                      


Q ss_pred             --------------CCCcee------------------eccC----cccCCceEEEEeeeecCCCCCCCccceEEEEEee
Q psy8662         132 --------------GLGIWV------------------TIRG----KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPIL  175 (260)
Q Consensus       132 --------------~~~i~l------------------~~~~----~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi  175 (260)
                                    .+||.|                  |...    ....+..++++|||.  ..+..+..|+++.++++
T Consensus       162 ~~i~~Hp~y~~~~~~~DIALl~L~~pv~~~~~v~picLp~~~~~~~~~~~~~~~~v~GwG~--~~~~~~~~L~~~~v~~~  239 (317)
T 3h5c_B          162 THVHVHMRYDADAGENDLSLLELEWPIQCPGAGLPVCTPEKDFAEHLLIPRTRGLLSGWAR--NGTDLGNSLTTRPVTLV  239 (317)
T ss_dssp             EEEEECTTCBTTTTBSCCEEEEESSCCCTTTSCCCCBCCCHHHHHHTTTTTSCEEEEBCCT--TCCSSSCCCBCCEEEEE
T ss_pred             eEEEECCCCCCCCCCCCeEEEEeCCcccCCCCccceeCCCcccccccccCCCeEEEEecCC--CCCCCCccceEEEEEEE
Confidence                          123333                  2111    123578899999997  34456788999999999


Q ss_pred             ChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHH
Q psy8662         176 SNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       176 ~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      +.++|+.. +...++++|||++..   ...|.+||||||++..+++|+|+||+||+. |+..+.|+|||||++|++||++
T Consensus       240 ~~~~C~~~-~~~~~~~~~~Ca~~~---~~~~~gDsGgPl~~~~~~~~~l~Gi~S~g~-~~~~~~p~vyt~V~~y~~WI~~  314 (317)
T 3h5c_B          240 EGEECGQV-LNVTVTTRTYCERSS---VAAMHWMDGSVVTREHRGSWFLTGVLGSQP-VGGQAHMVLVTKVSRYSLWFKQ  314 (317)
T ss_dssp             CHHHHHHH-HTCCCCTTEEEEECS---CCCCCCCTTCEEEEEETTEEEEEEEECCCC-SSCCTTEEEEEEGGGCHHHHHH
T ss_pred             CHHHHhhh-hcCcCCCceeECCCC---CCCcCCCCCCCEEEecCCEEEEEEEEEECC-CCCCCcceEEEEhHHhHHHHHH
Confidence            99999986 456789999999844   236788999999999999999999999985 6666789999999999999999


Q ss_pred             Hhh
Q psy8662         256 NTI  258 (260)
Q Consensus       256 ~~~  258 (260)
                      +|+
T Consensus       315 ~i~  317 (317)
T 3h5c_B          315 IMN  317 (317)
T ss_dssp             HHC
T ss_pred             HhC
Confidence            885

>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2

Probab=100.00  E-value=4.9e-37  Score=259.55  Aligned_cols=158  Identities=32%  Similarity=0.622  Sum_probs=130.5

Q ss_pred             eeCCeeCCCCCCceEEEEEec---CeeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~---~~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.++..++|||+|+|+..   +.++|+||||+++||||||||+..                                
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~~~CgGtLIs~~~VLTAAHC~~~~~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~   80 (221)
T 1fuj_A            1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFL   80 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCcCCEEEEEEecCCCCEEEEEEEecCCEEEEchHhcCcCCCCceEEEEeeeeccCCCCceEEEEEEEEEe
Confidence            689999999999999999874   368999999999999999999853                                


Q ss_pred             --------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhh
Q psy8662         132 --------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       132 --------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                              .+||.|                  +.... ...+..++++|||.+...+..+..|+++.++++ ...|+.. 
T Consensus        81 h~y~~~~~~~DiALl~L~~~~~~~~~v~picL~~~~~~~~~~~~~~~~GwG~~~~~~~~~~~l~~~~~~~~-~~~C~~~-  158 (221)
T 1fuj_A           81 NNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVV-TFFCRPH-  158 (221)
T ss_dssp             CCCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEE-CTTCCTT-
T ss_pred             CCCCCCCCcccEEEEEeCCccccCCcceeeECCCCcCCCCCCCEEEEEEeCCCCCCCCHHHHhhcccceEE-eeecCCc-
Confidence                    012222                  21111 135788999999988766666788999999999 8889752 


Q ss_pred             cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         185 YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       185 ~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                              +||++......+.|+|||||||++++    +|+||+||+. +|+..+.|++||||++|++||+++|+
T Consensus       159 --------~~Ca~~~~~~~~~C~GDSGgPL~~~~----~l~Gi~s~~~~gC~~~~~p~vyt~v~~~~~WI~~~i~  221 (221)
T 1fuj_A          159 --------NICTFVPRRKAGICFGDSGGPLICDG----IIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             --------EEEEECSSSSCBCCTTCTTCEEEETT----EEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             --------eeeeccCCCCCCCCCCCCCCeeEECC----EEeEEEEEeccCCCCCCCCcEEEeHHHHHHHHHHHhC
Confidence                    99998776668999999999999943    7999999954 48877789999999999999999885

>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A

Probab=100.00  E-value=5.1e-34  Score=267.60  Aligned_cols=170  Identities=28%  Similarity=0.494  Sum_probs=126.4

Q ss_pred             CeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc---------------------------CC-----
Q psy8662          90 GQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ---------------------------GL-----  133 (260)
Q Consensus        90 G~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~---------------------------~~-----  133 (260)
                      +..+..++|||||+|++.    +.++|+||||+++||||||||+..                           +|     
T Consensus       218 ~~~~~~~~~Pw~v~l~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~v~~G~~~~~~~v~~i~~Hp~y~~~~~  297 (497)
T 1rrk_A          218 RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGK  297 (497)
T ss_dssp             TTCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTCSSCEEEEEEEECTTCCTTTT
T ss_pred             CCCCCccccCcEEEEEEEcCCCCCceeEEEEecCCEEEECHHhCCCCCCceEEEEEeCCccceeeeEEEEeCCCcccccc
Confidence            445778899999999862    468999999999999999999852                           11     


Q ss_pred             -----------Ccee------------------eccC------cccCCceEEEEeeeecCCCC-------CCCccceEEE
Q psy8662         134 -----------GIWV------------------TIRG------KSFSNKTGIVTGWGVQKQGG-------STSDTLLEVE  171 (260)
Q Consensus       134 -----------~i~l------------------~~~~------~~~~~~~~~v~Gwg~~~~~~-------~~~~~l~~~~  171 (260)
                                 ||.|                  |...      ....+..|++.|||......       ..+..|+++.
T Consensus       298 ~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~L~~~~  377 (497)
T 1rrk_A          298 KEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKE  377 (497)
T ss_dssp             GGGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEE
T ss_pred             ccccccccCCCcEEEEEECCCCcCCCCeeeeeCCCCCccccccccCCCCchhcccccccCCccccceeeccCCCcceeee
Confidence                       3333                  1110      01235566677887543211       1346799999


Q ss_pred             EEeeC---hhhHhhhh-----cC------CCCCCCeEEeecCCC--CCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--C
Q psy8662         172 VPILS---NAECKKTA-----YE------NRITPNMLCAGYPKG--EKDSCQGDSGGPLHYANETVHHIVGVVSWGE--G  233 (260)
Q Consensus       172 v~vi~---~~~C~~~~-----~~------~~i~~~~~Ca~~~~~--~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~  233 (260)
                      +++++   .++|+..+     +.      ..++++||||+...+  +.+.|+|||||||++..+++|+|+||+|||.  +
T Consensus       378 v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~iCag~~~~~~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~~~  457 (497)
T 1rrk_A          378 VYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDV  457 (497)
T ss_dssp             EEEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCC
T ss_pred             EEEecCcccchhhhhhhhcccccccccccccCCCCeEEeCCCCCCCCCcCCCCCCCCeeEEEeCCEEEEEEEEEecCCCC
Confidence            99998   78998642     11      247899999986542  4789999999999999999999999999997  7


Q ss_pred             CC----CCCCCc----EEEechhhHHHHHHHhhc
Q psy8662         234 CA----QENYPG----VYARVNRYLTWIKNNTID  259 (260)
Q Consensus       234 C~----~~~~p~----vyt~V~~y~~WI~~~~~~  259 (260)
                      |+    ..+.|+    |||||++|++||+++|+.
T Consensus       458 C~~~~~~~~~P~~~r~vyt~V~~~~~WI~~~~~~  491 (497)
T 1rrk_A          458 CKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQD  491 (497)
T ss_dssp             C--------CCTTCEEEEEEGGGGHHHHHHHTTT
T ss_pred             CCCccccCCCCCccceeeeeHHHHHHHHHHHhCc
Confidence            98    456785    999999999999999874

>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*

Probab=100.00  E-value=6.1e-34  Score=268.11  Aligned_cols=179  Identities=21%  Similarity=0.408  Sum_probs=127.3

Q ss_pred             CCccCCCCCCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------
Q psy8662          75 PCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------  131 (260)
Q Consensus        75 ~~~cg~~~~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------  131 (260)
                      ...||..     .++|.++..++|||||+|+..+.++|+||||+++||||||||+..                       
T Consensus       217 ~~~CG~~-----~~~g~~a~~~~~Pw~v~l~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~~~~~~~  291 (509)
T 2odp_A          217 DTICGVG-----NMSANASDQERTPWHVTIKPKSQETCRGALISDQWVLTAAHCFRDGNDHSLWRVNVGDPKSQWGKEFL  291 (509)
T ss_dssp             SCCSSCC-----CCCTTSCHHHHCTTEEEEEC----CEEEEECSSSEEEECGGGC--------CEEEECCTTCTTCEEEC
T ss_pred             CcccCCc-----CCCCCccccCCCCcEEEEEeCCCcEEEEEEEcCCEEEEcHHHcCCCCCcceEEEEeCCcccCCCceee
Confidence            3467753     467889999999999999888889999999999999999999852                       


Q ss_pred             --------C----------------CCcee------------------eccCc------ccCCceEEEEeeeecCCCCCC
Q psy8662         132 --------G----------------LGIWV------------------TIRGK------SFSNKTGIVTGWGVQKQGGST  163 (260)
Q Consensus       132 --------~----------------~~i~l------------------~~~~~------~~~~~~~~v~Gwg~~~~~~~~  163 (260)
                              +                +||.|                  |....      ...+..|++.|||........
T Consensus       292 v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALl~L~~~v~~~~~v~picLp~~~~~~~~~~~~~g~~~~~~g~g~~~~~~~~  371 (509)
T 2odp_A          292 IEKAVISPGFDVFAKKNQGILEFYGDDIALLKLAQKVKMSTHARPICLPCTMEANLALRRPQGSTCRDHENELLNKQSVP  371 (509)
T ss_dssp             EEEEEECTTCCTTTTGGGTCCCCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEE
T ss_pred             eEEEEECCCCccccccccccccccCCCeEEEEECCcccCCCCcccccCCCCcccchhhccCCCCccccccccccccccce
Confidence                    1                13332                  11000      123455666788755432110


Q ss_pred             C----ccceEEEEEee---ChhhHhhhh------c------CCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEE
Q psy8662         164 S----DTLLEVEVPIL---SNAECKKTA------Y------ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHI  224 (260)
Q Consensus       164 ~----~~l~~~~v~vi---~~~~C~~~~------~------~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L  224 (260)
                      .    ...+++.+.++   +.++|+..+      +      ...++++||||+. ..+.+.|+|||||||++..+++|+|
T Consensus       372 ~~~~~l~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~~~iCag~-~~~~~~C~GDSGGPL~~~~~~~~~l  450 (509)
T 2odp_A          372 AHFVALNGSKLNINLKMGVEWTSCAEVVSQEKTMFPNLTDVREVVTDQFLCSGT-QEDESPCKGESGGAVFLERRFRFFQ  450 (509)
T ss_dssp             EEEECTTSCEEEEEEECTHHHHHHHHGGGGCTTTCTTCSSGGGTSCTTEEEECC-TTCCCCCGGGTTCEEEEEETTEEEE
T ss_pred             eeeecccCceeeEEEecCccHHHHHHHhhcccccccccccccccccCCEEEeCC-CCCCcccCCCccCceEEEECCeEEE
Confidence            0    11245666664   688998742      2      2357899999985 4557999999999999999999999


Q ss_pred             EEEEeeCC--CCC---------CCCCC------cEEEechhhHHHHHHHhhc
Q psy8662         225 VGVVSWGE--GCA---------QENYP------GVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       225 ~GI~S~g~--~C~---------~~~~p------~vyt~V~~y~~WI~~~~~~  259 (260)
                      +||+|||.  +|+         ....|      ++||||++|++||+++++.
T Consensus       451 ~GIvS~G~~~~C~~~~~~~~~~~~~~Pg~~y~~~vyt~V~~~~~WI~~~~~~  502 (509)
T 2odp_A          451 VGLVSWGLYNPCLGSADKNSRKRAPRSKVPPPRDFHINLFRMQPWLRQHLGD  502 (509)
T ss_dssp             EEEEEEESCCTTC-----CCCCCCCTTCSSCCCEEEEEGGGCHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCCCcccccccccCcccCCCCCCceeeeHHHHhHHHHHHhCC
Confidence            99999997  696         23455      5999999999999999874

>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*

Probab=99.98  E-value=1.6e-32  Score=268.85  Aligned_cols=182  Identities=26%  Similarity=0.430  Sum_probs=133.5

Q ss_pred             CCCCccCCCCCCCceeCCeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc-----------------
Q psy8662          73 CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ-----------------  131 (260)
Q Consensus        73 c~~~~cg~~~~~~ri~gG~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~-----------------  131 (260)
                      |....||..     ..+|..+..++|||+|+|...    +.++|+||||+++||||||||+..                 
T Consensus       448 ~~~~~CG~~-----~~~~~~~~~~~~Pw~~~v~~~~~~~~~~~CgGsLIs~~~VLTAAHC~~~~~~~~~~~V~~G~~~~~  522 (741)
T 3hrz_D          448 QSLSLCGMV-----WEHRKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRD  522 (741)
T ss_dssp             SCTTSTTCC-----CCC---CCTTTCTTEEEEEECCCC-----EEEEECSSSEEEECGGGCC-----CCEEEEETTCSCC
T ss_pred             ccccccccc-----cccCCcccccCcCCeEEEEEEeCCCCCCEEEEEEecCCEEEEchhhccccCCcceEEEEeCCCceE
Confidence            445567754     345888999999999998773    468999999999999999999852                 


Q ss_pred             ----------C----------------CCceeeccCc------------------------ccCCceEEEEeeeecCCCC
Q psy8662         132 ----------G----------------LGIWVTIRGK------------------------SFSNKTGIVTGWGVQKQGG  161 (260)
Q Consensus       132 ----------~----------------~~i~l~~~~~------------------------~~~~~~~~v~Gwg~~~~~~  161 (260)
                                +                +||.|.....                        ...+..+.+.|||......
T Consensus       523 ~~v~~i~~Hp~y~~~~~~~~~~~~~~~nDIALlkL~~pv~~s~~v~picLp~~~~~~~~~~~~~~~~~~~~gwg~~~~~~  602 (741)
T 3hrz_D          523 LEIEVVLFHPNYNINGKKEAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQD  602 (741)
T ss_dssp             EEEEEEEECTTCCTTTTGGGTCSCCCTTCCEEEEESSCCCCCSSCCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSE
T ss_pred             EEEEEEEECCCCCcccccccccCCccCCcEEEEEECCcCcCCCCccccccCCcccccchhccCCCCcccccccccccccc
Confidence                      1                1344321111                        1235567788998765432


Q ss_pred             -------CCCccceEEEEEeeC---hhhHhhhhc-----------CCCCCCCeEEeecCC--CCCCCCcCCCCCceEEee
Q psy8662         162 -------STSDTLLEVEVPILS---NAECKKTAY-----------ENRITPNMLCAGYPK--GEKDSCQGDSGGPLHYAN  218 (260)
Q Consensus       162 -------~~~~~l~~~~v~vi~---~~~C~~~~~-----------~~~i~~~~~Ca~~~~--~~~~~C~gDsGgPl~~~~  218 (260)
                             .....|+++.+.+++   .+.|+..+.           ...++++||||+...  .+.++|+|||||||++..
T Consensus       603 ~~~~~~~~~~~~L~~~~v~i~~~~~~~~C~~~~~~~~~~~~~~~~~~~i~~~~lCag~~~~~~~~~~C~GDSGGPL~~~~  682 (741)
T 3hrz_D          603 IKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHK  682 (741)
T ss_dssp             EEEEEEEESSSCEEEEEEEEECSTTHHHHHHGGGGSTTCTTCSSGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEE
T ss_pred             ccceeccccccccccceeEeecCcccchhhhhhhhccccccccccccccCCCeEecCCcCCCCCCCcCcCcccCceEEee
Confidence                   125678999999998   889987321           135889999998754  257899999999999999


Q ss_pred             CCeeEEEEEEeeCC--CCCC---CCCC-----cEEEechhhHHHHHHHhhc
Q psy8662         219 ETVHHIVGVVSWGE--GCAQ---ENYP-----GVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       219 ~~~~~L~GI~S~g~--~C~~---~~~p-----~vyt~V~~y~~WI~~~~~~  259 (260)
                      +++|+|+||+|||.  +|+.   .+.|     ++||||+.|++||+++|++
T Consensus       683 ~~~~~lvGIvS~G~~~~C~~~~~~~~p~~~~~~vyt~V~~~~~WI~~~i~~  733 (741)
T 3hrz_D          683 RSRFIQVGVISWGVVDVCKNQKRQKQVPAHARDFHINLFQVLPWLKEKLQD  733 (741)
T ss_dssp             TTEEEEEEEEEEESSCCCC------CCCTTCEEEEEEGGGSHHHHHHHTTT
T ss_pred             CCeEEEEEEEeecCCcccCCcccccCCCCCccceEEEhHHhHHHHHHHhcC
Confidence            99999999999997  8987   5788     9999999999999999976

>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A

Probab=99.96  E-value=1.3e-30  Score=219.26  Aligned_cols=148  Identities=20%  Similarity=0.247  Sum_probs=113.8

Q ss_pred             CCCceeCCeeCCCCCCce--EEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------
Q psy8662          83 KKTRIVGGQVTYVHQYPW--MALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------  131 (260)
Q Consensus        83 ~~~ri~gG~~a~~~~~Pw--~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------  131 (260)
                      ...||+||.     +|||  ++.+. .+.++|+||||+++||||||||+..                             
T Consensus         7 ~~~rI~~g~-----~~P~~~~~~~~-~~~~~CgGtLIs~~~VLTAAHCv~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~   80 (215)
T 1p3c_A            7 GRTKVANTR-----VAPYNSIAYIT-FGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMT   80 (215)
T ss_dssp             CCEECSCTT-----STTGGGEEEEE-CSSCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTBCTTCCEEEE
T ss_pred             CCEEecCCC-----cCCCeEEEEEE-cCCceEEEEEEeCCEEEECccEeccCCCCccccceEEEEcccCCCCCCCeEEEE
Confidence            346788885     6788  45554 5679999999999999999999843                             


Q ss_pred             --------------CCCcee----------------eccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHh
Q psy8662         132 --------------GLGIWV----------------TIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECK  181 (260)
Q Consensus       132 --------------~~~i~l----------------~~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~  181 (260)
                                    .+||.|                +.. ....+..++++|||.+... ..+..|+++.+.+++.+.|.
T Consensus        81 ~i~~hp~y~~~~~~~~DiAll~L~~~~~~~v~pi~l~~~-~~~~g~~~~~~Gwg~~~~~-~~~~~l~~~~~~~~~~~~c~  158 (215)
T 1p3c_A           81 EFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQV-TNLTGTTIKISGYPGDKMR-STGKVSQWEMSGSVTREDTN  158 (215)
T ss_dssp             EEECCHHHHHHCCGGGCCEEEEESSCHHHHHCCCCBCCC-SCCTTCEEEEEECCHHHHH-HHSSCCCEEEEEECCEECSS
T ss_pred             EEEeCCccccCCCcccCEEEEEECCCCcccceeeecCCC-cccCCCeEEEecCCCCCcc-cccceechhccCccCcccch
Confidence                          012222                111 1235789999999975432 23467899999999999997


Q ss_pred             hhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         182 KTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       182 ~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ..+                ...+.|+|||||||++.+ +  +|+||+|||..|+  ..|++||+|++|++||++++++
T Consensus       159 ~~~----------------~~~~~C~GDSGgPl~~~~-g--~lvGi~S~g~~c~--~~p~v~t~v~~~~~WI~~~~~~  215 (215)
T 1p3c_A          159 LAY----------------YTIDTFSGNSGSAMLDQN-Q--QIVGVHNAGYSNG--TINGGPKATAAFVEFINYAKAQ  215 (215)
T ss_dssp             EEE----------------ECCCCCTTCTTCEEECTT-S--CEEEECCEEEGGG--TEEEEEBCCHHHHHHHHHHHTC
T ss_pred             hee----------------eccccCCCCCCCeeEccC-C--eEEEEEecccCCC--ccCceeEechHHHHHHHHHhcC
Confidence            642                136889999999999853 2  8999999998887  5799999999999999999874

>2pka_B Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_B 1hia_B

Probab=99.93  E-value=4.9e-25  Score=176.00  Aligned_cols=119  Identities=34%  Similarity=0.696  Sum_probs=100.9

Q ss_pred             ceeeccCcccCCceEEEEeeeecCCCC---CCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCC
Q psy8662         135 IWVTIRGKSFSNKTGIVTGWGVQKQGG---STSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG  211 (260)
Q Consensus       135 i~l~~~~~~~~~~~~~v~Gwg~~~~~~---~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsG  211 (260)
                      |+|+.... ..+..++++|||.+..++   ..+..|+++.+++++.++|++. +...++++|||++...+..+.|+||||
T Consensus        28 icLp~~~~-~~~~~~~v~GWG~~~~~~~~~~~~~~L~~~~~~i~~~~~C~~~-~~~~~~~~~iCa~~~~~~~~~C~GDsG  105 (152)
T 2pka_B           28 LELPTQEP-ELGSTCEASGWGSIEPGPDDFEFPDEIQCVQLTLLQNTFCADA-HPDKVTESMLCAGYLPGGKDTCMGDSG  105 (152)
T ss_dssp             CCCCSSCC-CTTCEEEEEESSCSSCCSSCCCCCSBCEEEEEEEECHHHHHHH-CSSBCCTTEEEEECTTSSCBCCTTCTT
T ss_pred             EECCCCCC-CCCCEEEEEecccccCCCCcCCCCccceEEEeEEcCHHHhhhh-hcCCCCCCEEeeccCCCCCcccCCccc
Confidence            55655433 458899999999887655   4678899999999999999986 445678999999876566899999999


Q ss_pred             CceEEeeCCeeEEEEEEeeC-CCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         212 GPLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       212 gPl~~~~~~~~~L~GI~S~g-~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      |||++.+    +|+||+||| ..|+..+.|+|||||++|++||+++++.
T Consensus       106 gPL~~~g----~l~Gi~S~g~~~C~~~~~p~vyt~V~~y~~WI~~~~~~  150 (152)
T 2pka_B          106 GPLICNG----MWQGITSWGHTPCGSANKPSIYTKLIFYLDWIDDTITE  150 (152)
T ss_dssp             CEEEETT----EEEEEECCCCSSTTCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             cceEECC----EEEEEEecCCCCCCCCCCCeEEEEHHHHHHHHHHHhcc
Confidence            9999963    699999999 7898878899999999999999999874

>1yph_E Chymotrypsin A, chain C; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1ca0_C 1cbw_C 1cho_G 1gct_C 1ab9_C* 1ggd_C* 1gha_G 1ghb_G* 1gmc_G 1gmd_G 1gmh_G 1hja_C 1mtn_C 1n8o_C 1vgc_C* 1gg6_C 2cha_C* 2gch_G 2gct_C 2gmt_C* ...

Probab=99.92  E-value=9.2e-25  Score=161.68  Aligned_cols=94  Identities=40%  Similarity=0.789  Sum_probs=83.9

Q ss_pred             CCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcE
Q psy8662         163 TSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGV  242 (260)
Q Consensus       163 ~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~v  242 (260)
                      .+..|+++.+++++.++|++.+ ...++++||||+.  .+.+.|+|||||||++..+++|+|+||+|||..|+..+.|+|
T Consensus         3 ~~~~L~~~~v~i~~~~~C~~~~-~~~i~~~~iCa~~--~~~~~C~GDSGGPL~~~~~~~~~l~GIvS~g~~c~~~~~p~v   79 (97)
T 1yph_E            3 TPDRLQQASLPLLSNTNCKKYW-GTKIKDAMICAGA--SGVSSCMGDSGGPLVCKKNGAWTLVGIVSWGSSTCSTSTPGV   79 (97)
T ss_dssp             CCSBCEEEEEEBCCHHHHHHHH-GGGCCTTEEEEEC--SSCBCCTTCTTCEEEEEETTEEEEEEEEEECCTTCCTTSEEE
T ss_pred             cCccceEEEEEECCHHHhhHHh-cCCCCCceEeecC--CCCCCCcCCCCCcEEEEeCCeEEEEEEEEeCCCCCCCCCCeE
Confidence            3568999999999999998864 3468899999983  347899999999999998999999999999999988788999


Q ss_pred             EEechhhHHHHHHHhhc
Q psy8662         243 YARVNRYLTWIKNNTID  259 (260)
Q Consensus       243 yt~V~~y~~WI~~~~~~  259 (260)
                      ||||++|++||+++++.
T Consensus        80 yt~V~~y~~WI~~~~~~   96 (97)
T 1yph_E           80 YARVTALVNWVQQTLAA   96 (97)
T ss_dssp             EEEHHHHHHHHHHHHHH
T ss_pred             EEEHHHhHHHHHHHHcc
Confidence            99999999999999864

>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A*

Probab=99.91  E-value=1.1e-24  Score=189.54  Aligned_cols=144  Identities=19%  Similarity=0.255  Sum_probs=95.2

Q ss_pred             EEEEecCeeeeeeEEEeC------CEEEecccccccC------CC-----------------------------------
Q psy8662         102 ALLMYKKRFYCGATLINN------LYVLTAAHCVHQG------LG-----------------------------------  134 (260)
Q Consensus       102 v~l~~~~~~~C~GtLIs~------~~VLTAAhCv~~~------~~-----------------------------------  134 (260)
                      ++|...+.|+|+||||++      +||||||||+...      ..                                   
T Consensus        26 ~rl~~~g~~~CGGSLI~~~~~~~~~~VLTAAHCv~~~~~~~~~~~v~~~~~~~~c~~~~~~~~~~~~~~~~~~~~v~~~i  105 (268)
T 1arb_A           26 GAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGSTV  105 (268)
T ss_dssp             EEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECEEE
T ss_pred             EEEEeCCccEEeEEEEcCCCCCCCCEEEEcHHhCCCccCcceEEEEEeCCCCCccccccccccccccCCcceEEeccceE
Confidence            677778899999999998      6999999997420      00                                   


Q ss_pred             --------ceeeccCcc-cCCceEEEEeeeecCCCCCC-------CccceEEEEEeeChhhHhhhhcCCCCCCCeEEeec
Q psy8662         135 --------IWVTIRGKS-FSNKTGIVTGWGVQKQGGST-------SDTLLEVEVPILSNAECKKTAYENRITPNMLCAGY  198 (260)
Q Consensus       135 --------i~l~~~~~~-~~~~~~~v~Gwg~~~~~~~~-------~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~  198 (260)
                              |.|...... ..+..++++|||.+......       ...++++.+......   ...+...+.+.|||++.
T Consensus       106 ~h~~~~nDIALLrL~~~v~~~~~~~vsGWG~t~~~~~~~~~~~~~~~~l~~i~~~~~~~~---~~~~~~~~~~~~iCag~  182 (268)
T 1arb_A          106 KATYATSDFTLLELNNAANPAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTS---FVAWGGGAGTTHLNVQW  182 (268)
T ss_dssp             EEEETTTTEEEEEESSCCCGGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCE---EECTTSSSCSSEEEEEC
T ss_pred             ecCCCCCceEEEEecCCCCCCCceEEeCcCccCCCCCcceeeccCCcccEEEEeeccccc---cccccccccCCeEEEee
Confidence                    111100111 12456789999988754321       113444444443321   01123346789999974


Q ss_pred             CCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCC--CCCcEEEechhhHH
Q psy8662         199 PKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQE--NYPGVYARVNRYLT  251 (260)
Q Consensus       199 ~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~--~~p~vyt~V~~y~~  251 (260)
                      ..+..++|+|||||||++.   .++|+||+|||. .|...  +.|+|||||+.|.+
T Consensus       183 ~~~~gdtC~gdsGgPl~~~---~~~~~Gi~s~g~~~C~~~~~~~p~vyt~v~~~~~  235 (268)
T 1arb_A          183 QPSGGVTEPGSSGSPIYSP---EKRVLGQLHGGPSSCSATGTNRSDQYGRVFTSWT  235 (268)
T ss_dssp             CTTSCCCCTTCTTCEEECT---TSCEEEEEEECSCCTTCCGGGSEEEEEEHHHHHH
T ss_pred             ecCCCCCccCcccCCcEee---CCEEEEEEeecCcccCCCCCCCCceEEEeeeeec
Confidence            3212379999999999873   247999999996 69876  38999999987764

>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica}

Probab=99.87  E-value=1e-22  Score=171.92  Aligned_cols=122  Identities=21%  Similarity=0.321  Sum_probs=84.0

Q ss_pred             CCCCceEEEEEec---CeeeeeeEEEe---CCEEEeccccccc-------------------------------------
Q psy8662          95 VHQYPWMALLMYK---KRFYCGATLIN---NLYVLTAAHCVHQ-------------------------------------  131 (260)
Q Consensus        95 ~~~~Pw~v~l~~~---~~~~C~GtLIs---~~~VLTAAhCv~~-------------------------------------  131 (260)
                      +++||||++|++.   +.|+|+||||+   ++||||||||+..                                     
T Consensus         3 ~~~~p~~g~l~~~~~~~~~~CgGslI~s~s~~~VLTAAHC~~~~~~~~~~~~~~v~~G~~~~~~~~~~~~v~~~~~hp~y   82 (218)
T 3cp7_A            3 PADSPHIGKVFFSTNQGDFVCSANIVASANQSTVATAGHCLHDGNGGQFARNFVFAPAYDYGESEHGVWAAEELVTSAEW   82 (218)
T ss_dssp             CTTCTTEEEEEEEETTEEEEEEEEEBCCTTSCEEEECGGGTBCCTTCBBCEEEEEEETCSSSCCTTCCEEEEEEEECHHH
T ss_pred             CCCCceEEEEEEEcCCCCeEEEEEEEecCCCCEEEEChHhcCcCCCCeeecCEEEECcccCCCCCccEEEEEEEEECccc
Confidence            5799999999873   46899999999   9999999999842                                     


Q ss_pred             ------CCCceee---cc-----------C-----cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWVT---IR-----------G-----KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l~---~~-----------~-----~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            .+||.|.   ..           .     ....+..++++|||.+.....  ..|          ..|+...+.
T Consensus        83 ~~~~~~~~DiAll~L~~~~~~~~~~~v~~~~~l~~~~~~g~~~~v~GwG~~~~~~~--~~l----------~~C~~~~~~  150 (218)
T 3cp7_A           83 ANRGDFEHDYAFAVLETKGGTTVQQQVGTASPIAFNQPRGQYYSAYGYPAAAPFNG--QEL----------HSCHGTATN  150 (218)
T ss_dssp             HHHCCGGGCCEEEEECCBTTBCHHHHHSCCBCBCCSCCSSCEEEEEECCCSTTCCS--SSC----------EEEEEECEE
T ss_pred             ccCCCCcCCEEEEEEeCCCCcChhHhcCcccceeecCCCCCEEEEEeCCCCCCCCC--cee----------eEeeeeEEc
Confidence                  1122221   11           0     012357899999997642111  122          356542221


Q ss_pred             C---CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCC
Q psy8662         187 N---RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQ  236 (260)
Q Consensus       187 ~---~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~  236 (260)
                      .   .....|+|+.        |.|||||||++..+++++|+||+|||.+|..
T Consensus       151 ~~~~~~~~~~~Ca~--------~~GDSGGPlv~~~~g~~~lvGIvS~G~gc~~  195 (218)
T 3cp7_A          151 DPMGSSTQGIPCNM--------TGGSSGGPWFLGNGTGGAQNSTNSYGYTFLP  195 (218)
T ss_dssp             CTTSSSCEEEECCC--------CTTCTTCEEEESSSSSSCEEEECCEEETTEE
T ss_pred             CCCCCceEEecCCC--------CCCCcCCeeEEccCCCeEEEEEEccccCCCC
Confidence            1   1233789982        5699999999987778899999999998864

>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus}

Probab=99.87  E-value=1.4e-22  Score=168.47  Aligned_cols=140  Identities=15%  Similarity=0.207  Sum_probs=92.3

Q ss_pred             eCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-------------------------------CCCceeecc
Q psy8662          92 VTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-------------------------------GLGIWVTIR  140 (260)
Q Consensus        92 ~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------~~~i~l~~~  140 (260)
                      .+..++|||+|.+..   ++|+|+||+++||||||||+..                               .+||.|...
T Consensus         7 ~~~~~~~P~~~~~~~---~~c~G~lI~~~~VLTaaHcv~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~l   83 (204)
T 2vid_A            7 VKDTNIFPYTGVVAF---KSATGFVVGKNTILTNKHVSKNYKVGDRITAHPNSDKGNGGIYSIKKIINYPGKEDVSVIQV   83 (204)
T ss_dssp             CSCTTSTTGGGEEEC---SSCEEEEEETTEEEECHHHHTTCCTTCEEEESCCSSSCCSCEEEEEEEEECSSSSCCEEEEE
T ss_pred             eccCCcCchhheEEe---eeEEEEEEECCEEEEChhHCCCccCCceEEEEeccccCCCcEEEeeEEecCCCCCeEEEEEE
Confidence            467889999997653   5899999999999999999853                               122222111


Q ss_pred             C------------------------cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEe
Q psy8662         141 G------------------------KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCA  196 (260)
Q Consensus       141 ~------------------------~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca  196 (260)
                      .                        ....+..+++.|||.....   ...+ ......+..           +...++|.
T Consensus        84 ~~~~~~~~~~~~~~~~~v~pi~l~~~~~~g~~~~~~G~g~~~~~---~~~~-~~~~g~v~~-----------~~~~~~~~  148 (204)
T 2vid_A           84 EERAIERGPKGFNFNDNVTPFKYAAGAKAGERIKVIGYPHPYKN---KYVL-YESTGPVMS-----------VEGSSIVY  148 (204)
T ss_dssp             CSEEEEEETTEEEHHHHCCCCCBCSCCCTTCEEEEEECCCCCC-----CCC-EEEEEEEEE-----------EETTEEEE
T ss_pred             cCcccccccccccccccccccccCCcCCCCCEEEEEeCCCCCCC---Ccce-EeeccEEee-----------ccCCeEEE
Confidence            1                        1224678999999864321   1112 222222221           12457887


Q ss_pred             ecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC---CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         197 GYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE---GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       197 ~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~---~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .     .+.|+|||||||+..   .+.|+||+|++.   .|...++ .+|.. +.|++||++++.+
T Consensus       149 ~-----~~~~~GdSGGPl~~~---~g~lvGI~s~g~~~~~~~~~~~-~~~~~-~~~~~wI~~~~~~  204 (204)
T 2vid_A          149 S-----AHTESGNSGSPVLNS---NNELVGIHFASDVKNDDNRNAY-GVYFT-PEIKKFIAENIDK  204 (204)
T ss_dssp             C-----CCCCGGGTTCEEECT---TSCEEEEEEEECC---CCCCEE-EECCC-HHHHHHHHHHSCC
T ss_pred             e-----cccCCCCccCcEECC---CCeEEEEEecCccCCCcccccc-eeEeC-HHHHHHHHhhcCC
Confidence            3     678999999999963   247999999997   3554443 45444 8999999998863

>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A

Probab=99.87  E-value=1.2e-22  Score=168.78  Aligned_cols=140  Identities=15%  Similarity=0.201  Sum_probs=91.1

Q ss_pred             eCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc--------------------------------CCCceeec
Q psy8662          92 VTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ--------------------------------GLGIWVTI  139 (260)
Q Consensus        92 ~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~--------------------------------~~~i~l~~  139 (260)
                      .+..++|||+|.+.   .++|+|+||+++||||||||+..                                .+||.|..
T Consensus         7 i~~~~~~P~~v~~~---~~~c~G~lI~~~~VLTaaHcv~~~~~~~~~v~v~~~~~~~~~~~~~~~~i~~~~~~~DiAll~   83 (200)
T 2w7s_A            7 ITDATKEPYNSVVA---FVGGTGVVVGKNTIVTNKHIAKSNDIFKNRVSAHHSSKGKGGGNYDVKDIVEYPGKEDLAIVH   83 (200)
T ss_dssp             ESCTTSTTGGGEEE---ETTEEEEEEETTEEEECHHHHHHHHHTTCCEEETCCSSSCCCCEECEEEEEECSSSSSCEEEE
T ss_pred             eeccccCCcccccc---cceEEEEEEECCEEEEChhhcCCcccCCcEEEEEecCccCCCcEEEEEEEecCCCcceEEEEE
Confidence            47789999999885   36899999999999999999732                                12233211


Q ss_pred             cC--------------------cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecC
Q psy8662         140 RG--------------------KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYP  199 (260)
Q Consensus       140 ~~--------------------~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~  199 (260)
                      ..                    ....+..+++.||+......    ..+.+.+.+++..           ...++|..  
T Consensus        84 l~~~~~~~~~~~~~v~pi~l~~~~~~g~~v~v~G~p~g~~~~----~~~~~~~g~v~~~-----------~~~~~~~~--  146 (200)
T 2w7s_A           84 VHETSTEGLNFNKNVSYTKFADGAKVKDRISVIGYPKGAQTK----YKMFESTGTINHI-----------SGTFMEFD--  146 (200)
T ss_dssp             ECSBCTTSCBGGGSCCCCCBCCCCCTTCEEEEEECTTHHHHT----SCEEEEEEEEEEE-----------ETTEEEEC--
T ss_pred             ECCCCCCcccccccccceeccccCCCCCEEEEEECCCCCCCc----cceEEeEEEEEcc-----------CCCEEEEc--
Confidence            11                    12246788899974321110    0133444444421           13467763  


Q ss_pred             CCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCC-CCCCCcE-EEechhhHHHHHHHhhc
Q psy8662         200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCA-QENYPGV-YARVNRYLTWIKNNTID  259 (260)
Q Consensus       200 ~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~-~~~~p~v-yt~V~~y~~WI~~~~~~  259 (260)
                         .+.|+|||||||++.+   +.|+||+||+..|+ ....+++ |+  +.|++||++++++
T Consensus       147 ---~~~~~GdSGGPl~~~~---g~lvGI~s~g~~~~~~~~~~~v~~~--~~~~~wI~~~~~~  200 (200)
T 2w7s_A          147 ---AYAQPGNSGSPVLNSK---HELIGILYAGSGKDESEKNFGVYFT--PQLKEFIQNNIEK  200 (200)
T ss_dssp             ---SCCCTTCTTCEEECTT---SCEEEEEEEEC----CCCEEEEECC--HHHHHHHHHTSCC
T ss_pred             ---ceeCCCCccCeEECcC---CEEEEEEeccccCCCCccceeeecH--HHHHHHHHhhccC
Confidence               5789999999999642   26999999998774 2222366 55  9999999998863

>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1

Probab=99.86  E-value=4.3e-22  Score=173.18  Aligned_cols=140  Identities=16%  Similarity=0.181  Sum_probs=95.4

Q ss_pred             CCCCCCceEEE--EEe---cCeeeeeeEEEeCCEEEeccccccc-----------------------------------C
Q psy8662          93 TYVHQYPWMAL--LMY---KKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------G  132 (260)
Q Consensus        93 a~~~~~Pw~v~--l~~---~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------~  132 (260)
                      +..++|||++.  |..   .+.++|+|+||+++||||||||+..                                   .
T Consensus        12 ~~~~~~P~~~~v~l~~~~~~g~~~CgG~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~~~   91 (268)
T 1wcz_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE   91 (268)
T ss_dssp             SCTTSGGGTTEEEEEEEC-CCEEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSSS
T ss_pred             cCCCCCCccEEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCCCccCCcceEEEEecccCcccccCCcEEEEEEecCCCC
Confidence            56788898754  543   3578999999999999999999843                                   1


Q ss_pred             CCceeecc---------------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCC
Q psy8662         133 LGIWVTIR---------------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP  191 (260)
Q Consensus       133 ~~i~l~~~---------------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~  191 (260)
                      ++|.|...                     .....+..++++|||....     ..++.....++..           +..
T Consensus        92 ~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i~~-----------~~~  155 (268)
T 1wcz_A           92 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQVNQNITVTGYPGDKP-----VATMWESKGKITY-----------LKG  155 (268)
T ss_dssp             SCCEEEEECCCTTSCCHHHHSCCCCBCCCSSCCTTCEEEEEECCTTSS-----TTCEEEEEEEEEE-----------EET
T ss_pred             CcEEEEEecCcccccccccccceeecccccccCCCCEEEEEECCCCCC-----CceEEeecceEEe-----------eCC
Confidence            22222111                     1122467899999985431     2234444333331           124


Q ss_pred             CeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       192 ~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .++|.+     .+.|+|||||||++.   .+.|+||+|||..|+. + +++|+ ++.|++||+++++.
T Consensus       156 ~~i~~~-----~~~c~GdSGGPLv~~---~g~lvGIvS~G~~~~~-~-~~~~~-~~~~~~wI~~~i~~  212 (268)
T 1wcz_A          156 EAMQYD-----LSTTGGNSGSPVFNE---KNEVIGIHWGGVPNEF-N-GAVFI-NENVRNFLKQNIED  212 (268)
T ss_dssp             TEEEES-----BCCCTTCTTCEEECT---TSCEEEEEEEEETTTE-E-EEEEC-CHHHHHHHHHHCTT
T ss_pred             CeEEEe-----cccCCCCccCeEEcc---CCEEEEEEeCCccCCc-c-eeEEc-CHHHHHHHHHHHHh
Confidence            577763     688999999999963   2479999999988864 2 45555 79999999998764

>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A

Probab=99.85  E-value=1.4e-21  Score=170.41  Aligned_cols=140  Identities=15%  Similarity=0.174  Sum_probs=93.2

Q ss_pred             CCCCCCceEEE--EEe---cCeeeeeeEEEeCCEEEeccccccc-----------------------------------C
Q psy8662          93 TYVHQYPWMAL--LMY---KKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------G  132 (260)
Q Consensus        93 a~~~~~Pw~v~--l~~---~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------~  132 (260)
                      +..++|||++.  |..   .+.++|+|+||+++||||||||+..                                   .
T Consensus        12 ~~~~~~P~~~~v~i~~~~~~~~~~C~G~lI~~~~VLTAAHCv~~~~~~~~~i~V~~G~~~~~~~~~g~~~~~~i~~~~~~   91 (274)
T 2o8l_A           12 TDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGE   91 (274)
T ss_dssp             SSTTSGGGTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSSS
T ss_pred             cCCCCCCcceEEEEEEEcCCCCEEEEEEEEECCEEEEChhhCcccCCCcceEEEEecccCcccccCccEEEEEEEeCCCC
Confidence            55678888754  543   3568999999999999999999843                                   1


Q ss_pred             CCceeecc---------------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCC
Q psy8662         133 LGIWVTIR---------------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP  191 (260)
Q Consensus       133 ~~i~l~~~---------------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~  191 (260)
                      +||.|...                     .....+..++++|||....     ..++.....++..           +..
T Consensus        92 ~DIALLkL~~~~~~~~~~~~v~pi~L~~~~~~~~g~~v~v~Gwg~~~~-----~~~~~~~~g~i~~-----------~~~  155 (274)
T 2o8l_A           92 GDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNITVTGYPGDKP-----VATMWESKGKITY-----------LKG  155 (274)
T ss_dssp             SCCEEEEECCCTTSCCTTTSSCCCEECCCTTCCTTCEEEEEECCTTSS-----TTCEEEEEEEEEE-----------EET
T ss_pred             CcEEEEEecCcccccccccccccccccccccccCCCEEEEEECCCCCC-----CceEEecCceEEe-----------cCC
Confidence            22222111                     1122467899999986431     1122222222221           123


Q ss_pred             CeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       192 ~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .++|..     .+.|+|||||||++.   .+.|+||+|||..|+.  .+++|. ++.|++||+++++.
T Consensus       156 ~~i~~~-----~~~c~GdSGGPLv~~---~g~lvGIvS~G~~~~~--~~~~~~-~~~~~~wI~~~i~~  212 (274)
T 2o8l_A          156 EAMQYD-----LSTTGGNSGSPVFNE---KNEVIGIHWGGVPNEF--NGAVFI-NENVRNFLKQNIED  212 (274)
T ss_dssp             TEEEES-----CCCCTTCTTCEEECT---TSCEEEEEEEEETTTE--EEEEEC-CHHHHHHHHHHCTT
T ss_pred             CeEEeC-----cccCCCCchhheecc---CCeEEEEEeCcccCCC--CceEEe-cHHHHHHHHHHHhh
Confidence            467752     678999999999963   2479999999988864  245554 79999999998764

>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A

Probab=99.79  E-value=2.2e-19  Score=153.43  Aligned_cols=138  Identities=17%  Similarity=0.185  Sum_probs=93.2

Q ss_pred             CCCCCCceEEEE--EecCeeeeeeEEEeCCEEEeccccccc---------------------------------------
Q psy8662          93 TYVHQYPWMALL--MYKKRFYCGATLINNLYVLTAAHCVHQ---------------------------------------  131 (260)
Q Consensus        93 a~~~~~Pw~v~l--~~~~~~~C~GtLIs~~~VLTAAhCv~~---------------------------------------  131 (260)
                      +..++|||++.+  ...+.++|+|+||+++||||||||+..                                       
T Consensus        36 a~~~~~p~~~~v~i~~~~~~~c~G~lI~~~~VLTAaHcv~~~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~  115 (242)
T 1agj_A           36 KDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSFRPSINTDDNGNTETPYGEYEVKEILQEPF  115 (242)
T ss_dssp             TGGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHGGGTTCGGGEEEEETCEECTTSCEECTTCCEEEEEEESCTT
T ss_pred             ccccccccceEEEEEECCCccEEEEEEeCCEEEEChhhcccCCCCceEEEEecCccccccccccccCCceeEEEEEeCCC
Confidence            567899998544  445678999999999999999999842                                       


Q ss_pred             --CCCceeecc---------------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCC
Q psy8662         132 --GLGIWVTIR---------------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENR  188 (260)
Q Consensus       132 --~~~i~l~~~---------------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~  188 (260)
                        .+||.|...                     .....+..++++|||.....    ..++...+.+++..          
T Consensus       116 ~~~~DiAll~l~~~~~~~~~~~~v~~i~L~~~~~~~~g~~~~v~Gwg~~~~~----~~l~~~~~~~~~~~----------  181 (242)
T 1agj_A          116 GAGVDLALIRLKPDQNGVSLGDKISPAKIGTSNDLKDGDKLELIGYPFDHKV----NQMHRSEIELTTLS----------  181 (242)
T ss_dssp             CTTSCCEEEEECCCTTSCCHHHHSCCCEECCSTTCCTTCEEEEEECCTTTST----TCCEEEEEEECCGG----------
T ss_pred             CCCCcEEEEEEcCCCccccccccccceecCccccCCCCCEEEEEeCCCCCCC----ccceeeeeeEecCC----------
Confidence              122222110                     01124678999999865432    24677777776532          


Q ss_pred             CCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCC-CCCCCcEEEechhhHHHHHH
Q psy8662         189 ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCA-QENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       189 i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~-~~~~p~vyt~V~~y~~WI~~  255 (260)
                         ..++..     .+.|+|||||||++..   +.|+||+||+.+|. ......+.+.|...+.|+.+
T Consensus       182 ---~~~~~~-----~~~c~GdSGGPl~~~~---g~lvGI~s~g~~c~~~~~~~~~~~~i~~~~~~~l~  238 (242)
T 1agj_A          182 ---RGLRYY-----GFTVPGNSGSGIFNSN---GELVGIHSSKVSHLDREHQINYGVGIGNYVKRIIN  238 (242)
T ss_dssp             ---GSEEEE-----CCCCGGGTTCEEECTT---SEEEEEEEEEEECSSTTCEEEEEEECCHHHHHHHH
T ss_pred             ---ceEEEe-----CCcCCCCCchHhcccC---CEEEEEEeccccccCcCCCceeeEEehHHHHHHHH
Confidence               123321     4689999999999642   37999999999886 33346778999755554443

>1yph_C Chymotrypsin A, chain B; serine protease, hydrolase; 1.34A {Bos taurus} PDB: 1afq_B* 1ca0_B 1cbw_B 1cho_F 1gct_B 1ab9_B* 1ggd_B* 1gha_F 1ghb_F* 1gmc_F 1gmd_F 1gmh_F 1hja_B 1mtn_B 1n8o_B 1vgc_B* 1gg6_B 2cha_B* 2gch_F 2gct_B ...

Probab=99.78  E-value=4.3e-19  Score=137.87  Aligned_cols=44  Identities=39%  Similarity=0.706  Sum_probs=41.0

Q ss_pred             eeCCeeCCCCCCceEEEEEe-cCeeeeeeEEEeCCEEEecccccc
Q psy8662          87 IVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVH  130 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~-~~~~~C~GtLIs~~~VLTAAhCv~  130 (260)
                      |+||.+|..++|||||+|+. .+.++|+||||+++||||||||+.
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~~CgGsLIs~~~VLTAAHC~~   45 (131)
T 1yph_C            1 IVNGEEAVPGSWPWQVSLQDKTGFHFCGGSLINENWVVTAAHCGV   45 (131)
T ss_dssp             CBTCEECCTTSSTTEEEEECTTSCEEEEEEEEETTEEEECGGGCC
T ss_pred             CCCCEECCCCCcCcEEEEEeCCCCEEEEEEEeeCCEEEECHHHCC
Confidence            68999999999999999987 567899999999999999999984

>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ...

Probab=99.76  E-value=7.3e-20  Score=150.37  Aligned_cols=128  Identities=19%  Similarity=0.256  Sum_probs=88.1

Q ss_pred             eeeee-eEEEe---CCEEEeccccccc-----------------------CCCceeecc-------------------Cc
Q psy8662         109 RFYCG-ATLIN---NLYVLTAAHCVHQ-----------------------GLGIWVTIR-------------------GK  142 (260)
Q Consensus       109 ~~~C~-GtLIs---~~~VLTAAhCv~~-----------------------~~~i~l~~~-------------------~~  142 (260)
                      ...|+ |.++.   ++||||||||+..                       .+||.|...                   ..
T Consensus        11 ~~~ct~Gf~v~~~~~~~ilTaaHcv~~~~~~~v~~~~~~~~g~~~~~~~~~~DiAll~l~~~~~~~~~~v~~~~l~~~~~   90 (185)
T 2qa9_E           11 TGRCSLGFNVRSGSTYYFLTAGHCTDGATTWWANSARTTVLGTTSGSSFPNNDYGIVRYTNTTIPKDGTVGGQDITSAAN   90 (185)
T ss_dssp             SCEEECCEEEEETTEEEEEECHHHHTTCSEEESSTTSCSEEEEEEEEECSBSCEEEEEECCSSSCCCCEETTEECCEECC
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCCCcEEecCCCceEeEEEeccccCCCCEEEEEecCCCccccCccceeeeCCccc
Confidence            46798 89887   4699999999853                       123333111                   12


Q ss_pred             ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCee
Q psy8662         143 SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVH  222 (260)
Q Consensus       143 ~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~  222 (260)
                      ...++.+.++||+..    .....|+.+.+++ ....|. . +. .+...|+|+         |+|||||||++.+    
T Consensus        91 ~~~g~~v~~~Gw~~~----~~~g~l~~~~~~v-~~~~~~-~-~~-~~~~~~~ca---------c~GDSGGPlv~~~----  149 (185)
T 2qa9_E           91 ATVGMAVTRRGSTTG----THSGSVTALNATV-NYGGGD-V-VY-GMIRTNVCA---------EPGDSGGPLYSGT----  149 (185)
T ss_dssp             CCTTCEEEEEETTTE----EEEEEEEEEEEEE-ECSTTC-E-EE-EEEEESCCC---------CTTCTTCEEEETT----
T ss_pred             CCCCCEEEEecCCCc----eeEeEEEEEEEEE-EcCCCC-E-Ee-ceEEecccC---------CCCCccceEEECC----
Confidence            235778999999532    1234677777775 322332 1 11 122355664         9999999999752    


Q ss_pred             EEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         223 HIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       223 ~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +|+||+||+.+|+..+.|++|++|+.|++||+.++
T Consensus       150 ~~vGI~s~g~~~~~~~~p~vyt~v~~~~~wI~~~l  184 (185)
T 2qa9_E          150 RAIGLTSGGSGNCSSGGTTFFQPVTEALSAYGVSV  184 (185)
T ss_dssp             EEEEEEEEEEEETTTEEEEEEEEHHHHHHHHTCEE
T ss_pred             EEEEEEEecCCCCCCCCcEEEEEHHHHHHhhCcEE
Confidence            79999999988776678999999999999998653

>2pka_A Kallikrein A; serine proteinase; 2.05A {Sus scrofa} SCOP: b.47.1.2 PDB: 2kai_A 1hia_A

Probab=99.74  E-value=3.4e-18  Score=121.58  Aligned_cols=45  Identities=38%  Similarity=0.745  Sum_probs=42.4

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~  131 (260)
                      |+||.++..++|||||+|+.++.++|+||||+++||||||||+..
T Consensus         1 IvgG~~a~~~~~Pw~v~l~~~~~~~CgGslIs~~~VLTAAHC~~~   45 (80)
T 2pka_A            1 IIGGRECEKNSHPWQVAIYHYSSFQCGGVLVNPKWVLTAAHCKND   45 (80)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCS
T ss_pred             CCCCEECCCCCCCcEEEEEECCceEEEEEEEcCCEEEECHHHCCC
Confidence            689999999999999999988889999999999999999999854

>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus}

Probab=99.72  E-value=2e-17  Score=138.44  Aligned_cols=137  Identities=18%  Similarity=0.184  Sum_probs=89.2

Q ss_pred             CCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-------------------------------CCCceeeccC
Q psy8662          93 TYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-------------------------------GLGIWVTIRG  141 (260)
Q Consensus        93 a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------~~~i~l~~~~  141 (260)
                      +..++|||+|.+.   .++|+|+||+++||||||||+..                               .+||.|....
T Consensus         9 ~~~~~~P~~v~~~---~~~c~G~lI~~~~VLTaaHcv~~~~~~~~i~v~~~~~~~~g~~~~~~~v~~~~~~~DiAll~l~   85 (210)
T 2as9_A            9 KDTNNFPYNGVVS---FKDATGFVIGKNTIITNKHVSKDYKVGDRITAHPNGDKGNGGIYKIKSISDYPGDEDISVMNIE   85 (210)
T ss_dssp             SCTTSTTGGGEEE---CSSCEEEEEETTEEEECHHHHHHCCTTCEEEESCCGGGCCSCEEEEEEEEECSSSSSCEEEEEC
T ss_pred             ecCCcCCeEEEEE---eeeEEEEEEeCCEEEECHhHCCccCCCCEEEEEeCcccCCCCEEEEEEEEeCCCCCcEEEEEec
Confidence            5578999999774   36899999999999999999842                               1122221110


Q ss_pred             ------------------------cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEee
Q psy8662         142 ------------------------KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAG  197 (260)
Q Consensus       142 ------------------------~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~  197 (260)
                                              ....++.+++.||+.....   ...+ .+.+.+++..           ...++|+.
T Consensus        86 ~~~~~~~~~~~~~~~~v~~i~l~~~~~~g~~v~v~G~p~~~~~---~~~l-~~~~g~v~~~-----------~~~~i~~~  150 (210)
T 2as9_A           86 EQAVERGPKGFNFNENVQAFNFAKDAKVDDKIKVIGYPLPAQN---SFKQ-FESTGTIKRI-----------KDNILNFD  150 (210)
T ss_dssp             SEEEEEETTEEEGGGSCCCCCBCSCCCTTCEEEEEECSSTTTT---TSCC-EEEEEEEEEE-----------ETTEEEEE
T ss_pred             CccccccccccccccccceeecCCCCCCCCEEEEEeCCCCCCC---Ccce-EEeeeEEccc-----------cCCeEEEc
Confidence                                    1124678999999753321   1122 4455555432           13578874


Q ss_pred             cCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEec-hhhHHHHHHH
Q psy8662         198 YPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARV-NRYLTWIKNN  256 (260)
Q Consensus       198 ~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V-~~y~~WI~~~  256 (260)
                           ...|+|||||||++.+ +  .|+||+||+........ ..|+.+ ...++|++..
T Consensus       151 -----~~~~~GdSGGPlv~~~-g--~lvGI~s~g~~~~~~~~-~~~~~~~~~i~~f~~~~  201 (210)
T 2as9_A          151 -----AYIEPGNSGSPVLNSN-N--EVIGVVYGGIGKIGSEY-NGAVYFTPQIKDFIQKH  201 (210)
T ss_dssp             -----CCCCTTCTTCEEECTT-S--CEEEEECCSCCCTTCSS-EEEEECCHHHHHHHHTT
T ss_pred             -----CccCCCCccCcEECCC-C--eEEEEEecccccCCccc-cccEEEcHHHHHHHHHh
Confidence                 5689999999999643 2  59999999875322222 236665 6677888764

>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A

Probab=99.59  E-value=2.6e-15  Score=128.60  Aligned_cols=38  Identities=18%  Similarity=0.234  Sum_probs=32.1

Q ss_pred             CCCCCCceEEE--EEecCeeeeeeEEEeCCEEEecccccc
Q psy8662          93 TYVHQYPWMAL--LMYKKRFYCGATLINNLYVLTAAHCVH  130 (260)
Q Consensus        93 a~~~~~Pw~v~--l~~~~~~~C~GtLIs~~~VLTAAhCv~  130 (260)
                      +..++|||++.  |...+.++|+|+||+++||||||||+.
T Consensus        29 ~~~~~~P~~~~~~i~~~~~~~c~G~lI~~~~VLTAaHcv~   68 (246)
T 1qtf_A           29 TDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAR   68 (246)
T ss_dssp             SCCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHG
T ss_pred             hhcCcCchhcEEEEEECCCceEEEEEEECCEEEECHHhCC
Confidence            55679999865  445677899999999999999999984

>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A

Probab=99.54  E-value=1.8e-15  Score=123.68  Aligned_cols=125  Identities=19%  Similarity=0.233  Sum_probs=79.5

Q ss_pred             eeeee-eEEEe---CCEEEeccccccc---------------CCCceeec-----------------------cCcccCC
Q psy8662         109 RFYCG-ATLIN---NLYVLTAAHCVHQ---------------GLGIWVTI-----------------------RGKSFSN  146 (260)
Q Consensus       109 ~~~C~-GtLIs---~~~VLTAAhCv~~---------------~~~i~l~~-----------------------~~~~~~~  146 (260)
                      ...|+ |.||+   ++||||||||+..               .+|+.|..                       ......+
T Consensus        11 ~~~ct~G~~v~~~~~~~vlTaaHc~~~~~~~~~G~~~~~~~~~~DiAlikl~~~~~~~~~v~~i~~~~~~~~~~~~~~~G   90 (181)
T 2sga_A           11 GSRCSLGFNVSVNGVAHALTAGHCTNISASWSIGTRTGTSFPNNDYGIIRHSNPAAADGRVYLYNGSYQDITTAGNAFVG   90 (181)
T ss_dssp             TEEEECCEEEEETTEEEEEECHHHHTTCSEETTEEEEEEECSBSCEEEEEESCGGGCCCEEECSSSCEEECCEECCCCTT
T ss_pred             CCcEeccEEEEECCceEEEECcccCCCCCceeecceeCCcCCCCCEEEEEccCCCcccceEEecCCcceeecccccCCCC
Confidence            45799 99999   6899999999853               22333311                       0112346


Q ss_pred             ceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEE
Q psy8662         147 KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVG  226 (260)
Q Consensus       147 ~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~G  226 (260)
                      +.+.+.||....    ....++.+.+.+ +..++..  +     .++++.     ..-.|+|||||||++.+    .++|
T Consensus        91 ~~v~~~G~~~~~----t~G~v~~~~~~v-~~~~~~~--~-----~~~i~~-----~~c~~~GDSGGPlv~~~----~~vG  149 (181)
T 2sga_A           91 QAVQRSGSTTGL----RSGSVTGLNATV-NYGSSGI--V-----YGMIQT-----NVCAQPGDSGGSLFAGS----TALG  149 (181)
T ss_dssp             CEEEEEETTTEE----EEEEEEEEEEEE-ECGGGCE--E-----EEEEEE-----SCCCCTTCTTCEEEETT----EEEE
T ss_pred             CEEEEeecCCCc----cEEEEEEeEEEE-ECCCCCE--E-----eeeEec-----ccccCCCCCCCEEEECC----EEEE
Confidence            667777775321    112456666664 3222220  1     123332     13346899999999753    7999


Q ss_pred             EEeeCCCCCCCCCCcEEEechhhHHHHH
Q psy8662         227 VVSWGEGCAQENYPGVYARVNRYLTWIK  254 (260)
Q Consensus       227 I~S~g~~C~~~~~p~vyt~V~~y~~WI~  254 (260)
                      |+||+..|+....|++|++|+.|++|+.
T Consensus       150 I~s~g~~~~~~~~~~v~~~v~~~~~~l~  177 (181)
T 2sga_A          150 LTSGGSGNCRTGGTTFYQPVTEALSAYG  177 (181)
T ss_dssp             EEEEEEEETTTEEEEEEEEHHHHHHHHT
T ss_pred             EEEeeCCCCcCCCceEEEEHHHHHHhcC
Confidence            9999975433356999999999999984

>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A

Probab=99.40  E-value=1.1e-12  Score=111.41  Aligned_cols=145  Identities=17%  Similarity=0.110  Sum_probs=85.9

Q ss_pred             CCceEEEEEecC-----eeeeeeEEEeCCEEEeccccccc----------------------CCCceeec----------
Q psy8662          97 QYPWMALLMYKK-----RFYCGATLINNLYVLTAAHCVHQ----------------------GLGIWVTI----------  139 (260)
Q Consensus        97 ~~Pw~v~l~~~~-----~~~C~GtLIs~~~VLTAAhCv~~----------------------~~~i~l~~----------  139 (260)
                      .-|.+|.|....     ...|+|+||+++||||||||+..                      .+||.|..          
T Consensus        40 ~~~svV~I~~~~~~~~~~~~GsG~iI~~~~VlTaaH~v~~~~~~~V~~~~~~~~~~~v~~~~~~DiAll~l~~~~~~~~~  119 (237)
T 3k6y_A           40 TEPSVVKIRSLAPRCQKVLEGTGFVISPDRVMTNAHVVAGSNNVTVYAGDKPFEATVVSYDPSVDVAILAVPHLPPPPLV  119 (237)
T ss_dssp             HGGGEEEEEEEEGGGTEEEEEEEEEEETTEEEECGGGTTTCSEEEEEETTEEEECEEEEEETTTTEEEEECTTCCSCCCC
T ss_pred             hcCCEEEEEEEecCCCcceeEEEEEEECCEEEECHHHcCCCceEEEEECCcEEEEEEEEEcCCCCEEEEEeCCCCCCcee
Confidence            458888887642     56899999999999999999864                      23443311          


Q ss_pred             --cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCC-CCCCeEEeecCCCCCCCCcCCCCCceEE
Q psy8662         140 --RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENR-ITPNMLCAGYPKGEKDSCQGDSGGPLHY  216 (260)
Q Consensus       140 --~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~-i~~~~~Ca~~~~~~~~~C~gDsGgPl~~  216 (260)
                        ......++.+++.||+....     ..+....+..+....|...+.... ....+++.     ....|+|||||||+.
T Consensus       120 l~~~~~~~G~~v~v~G~p~g~~-----~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~GdSGGPLv~  189 (237)
T 3k6y_A          120 FAAEPAKTGADVVVLGYPGGGN-----FTATPARIREAIRLSGPDIYGDPEPVTRDVYTI-----RADVEQGDSGGPLID  189 (237)
T ss_dssp             BCSSCCCTTCEEEEEECGGGCS-----CEEEEEEEEEEEEEEECCTTCCSSCEEEEEEEE-----ESCCCTTCTTCEEEC
T ss_pred             cCCCCCCCCCEEEEEECCCCCC-----CccceeEEEeeEeecccccccCCCcccccEEEe-----cCccCCCccHHHEEC
Confidence              12233578899999975431     122333333332233333211111 11123333     357899999999996


Q ss_pred             eeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHH
Q psy8662         217 ANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN  256 (260)
Q Consensus       217 ~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  256 (260)
                      .+ +  .|+||+|++..-..  .-+....+...++||++.
T Consensus       190 ~~-G--~vvGI~s~~~~~~~--~~~~aip~~~v~~~l~~~  224 (237)
T 3k6y_A          190 LN-G--QVLGVVFGAAIDDA--ETGFVLTAGEVAGQLAKI  224 (237)
T ss_dssp             TT-S--CEEEEEEEECSSST--TEEEEEEHHHHHGGGGGT
T ss_pred             CC-C--EEEEEEEeeccCCC--cEEEEEEHHHHHHHHHHc
Confidence            43 3  59999999754221  124456666666666554

>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A

Probab=99.32  E-value=1.5e-11  Score=104.35  Aligned_cols=142  Identities=11%  Similarity=0.102  Sum_probs=84.2

Q ss_pred             CceEEEEEecCe----------eeeeeEEEeCC-EEEeccccccc-----------------------CCCceeec----
Q psy8662          98 YPWMALLMYKKR----------FYCGATLINNL-YVLTAAHCVHQ-----------------------GLGIWVTI----  139 (260)
Q Consensus        98 ~Pw~v~l~~~~~----------~~C~GtLIs~~-~VLTAAhCv~~-----------------------~~~i~l~~----  139 (260)
                      -|.+|.|.....          ..++|+||+++ ||||||||+..                       .+||.|..    
T Consensus        41 ~~sVV~I~~~~~~~~~~~~~~~~~GSG~iI~~~G~VLTaaHvv~~~~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l~~~  120 (231)
T 3tjo_A           41 APAVVHIELFRKLPFSKREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQ  120 (231)
T ss_dssp             GGGEEEEEEEEECTTSSCEEEEEEEEEEECSTTCEEEEETTTCCSSSEEEEECTTSCEEEEEEEEEETTTTEEEEECCCS
T ss_pred             cCcEEEEEEEeccccCCCccccceEEEEEEeCCCEEEEchhcccCCceEEEEcCCCCEEEEEEEEecCCCCEEEEEecCC
Confidence            477777754321          57999999998 99999999864                       23444311    


Q ss_pred             ----------cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCC
Q psy8662         140 ----------RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGD  209 (260)
Q Consensus       140 ----------~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gD  209 (260)
                                ......++.+++.||+....     ..+....+..+....+....  ......++++.     ...|.||
T Consensus       121 ~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~-----~~~~~g~vs~~~~~~~~~~~--~~~~~~~i~~d-----a~i~~G~  188 (231)
T 3tjo_A          121 GKLPVLLLGRSSELRPGEFVVAIGSPFSLQ-----NTVTTGIVSTTQRGGKELGL--RNSDMDYIQTD-----AIINYGN  188 (231)
T ss_dssp             SCCCCCCBCCGGGCCTTCEEEEEEEEETTE-----EEEEEEEEEECC---------------CCEEES-----SCCCTTT
T ss_pred             CCCCceecCCcCCCCCCCEEEEEECCCCCC-----CceeeEEEeecccccccccc--CCCcccEEEEc-----CCcCCCC
Confidence                      11223578999999975321     11222222222221111100  01112355553     4678999


Q ss_pred             CCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         210 SGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       210 sGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      |||||+..+ +  .|+||+||+..++    -+....+...++||++..+
T Consensus       189 SGGPLv~~~-G--~vVGI~s~~~~~g----~~~aip~~~i~~~l~~~~~  230 (231)
T 3tjo_A          189 AGGPLVNLD-G--EVIGINTLKVTAG----ISFAIPSDKIKKFLTESHD  230 (231)
T ss_dssp             TTSEEECTT-S--CEEEEEEEEEETT----EEEEEEHHHHHHHHHHHHT
T ss_pred             chhHeecCC-C--eEEEEEeEEecCC----eEEEEEHHHHHHHHHHHhh
Confidence            999998533 2  5999999976432    2556888889999988764

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=99.24  E-value=5.7e-11  Score=105.48  Aligned_cols=146  Identities=16%  Similarity=0.109  Sum_probs=86.4

Q ss_pred             CCceEEEEEec---CeeeeeeEEEeC-CEEEecccccccC--------------------------------CCceeec-
Q psy8662          97 QYPWMALLMYK---KRFYCGATLINN-LYVLTAAHCVHQG--------------------------------LGIWVTI-  139 (260)
Q Consensus        97 ~~Pw~v~l~~~---~~~~C~GtLIs~-~~VLTAAhCv~~~--------------------------------~~i~l~~-  139 (260)
                      ..|++|.|...   ....|+|+||++ .||||+|||+...                                +|+.|.. 
T Consensus        15 ~~~svV~I~~~~~~~~~~gsG~iI~~~g~ILT~aHvv~~~~~~~~~~~~~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl   94 (324)
T 1y8t_A           15 VVPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFTVVGADPTSDIAVVRV   94 (324)
T ss_dssp             HGGGEEEEEEEC----CEEEEEECCTTSEEEEEHHHHTTCC--------CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred             hcCcEEEEEEEccCCCceEEEEEEeCCCEEEEChHHcCCcccccccCCceEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence            46999999863   467899999998 6999999998532                                1222210 


Q ss_pred             -------------cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhh---hcC-CCCCCCeEEeecCCCC
Q psy8662         140 -------------RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT---AYE-NRITPNMLCAGYPKGE  202 (260)
Q Consensus       140 -------------~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~---~~~-~~i~~~~~Ca~~~~~~  202 (260)
                                   ......++.+++.||......        .+..-+++...+...   ..+ ......+||+.     
T Consensus        95 ~~~~~~~~~~l~~~~~~~~G~~v~~~G~p~g~~~--------~~~~G~vs~~~~~~~~~~~~g~~~~~~~~i~~d-----  161 (324)
T 1y8t_A           95 QGVSGLTPISLGSSSDLRVGQPVLAIGSPLGLEG--------TVTTGIVSALNRPVSTTGEAGNQNTVLDAIQTD-----  161 (324)
T ss_dssp             CSCCSCCCCEECCSTTCCTTCEEEEEECGGGCTT--------EEEEEEEEEEEEEECC-------CCCEEEEEEC-----
T ss_pred             CCCCCCceEEecCcccCCCCCEEEEEEcCCCCCC--------cEeeeEEeecccccccccccCcccccCCEEEEc-----
Confidence                         111235788999999432210        111111111111000   000 12345689983     


Q ss_pred             CCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCC--------CCCCCcEEEechhhHHHHHHHhh
Q psy8662         203 KDSCQGDSGGPLHYANETVHHIVGVVSWGEGCA--------QENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       203 ~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~--------~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ...|+|||||||+... +  .|+||++++..-.        ....-+....+...++++.+.++
T Consensus       162 ~~~~~G~SGGPlv~~~-G--~vvGI~s~~~~~~~~~~~~~~~~~g~~~aIP~~~v~~~l~~l~~  222 (324)
T 1y8t_A          162 AAINPGNSGGALVNMN-A--QLVGVNSAIATLGADSADAQSGSIGLGFAIPVDQAKRIADELIS  222 (324)
T ss_dssp             SCCCTTCTTEEEECTT-S--EEEEEEEEECCC-------CCCCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             CCCCCCCccCcEECCC-C--eEEEEEeeecccCcccccccccccceEEecCHHHHHHHHHHHHH
Confidence            5789999999999643 2  6999999975321        11123567778888888877554

>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1

Probab=99.22  E-value=4.8e-11  Score=101.73  Aligned_cols=134  Identities=18%  Similarity=0.162  Sum_probs=81.1

Q ss_pred             eeeeeeEEEeCC-EEEeccccccc-----------------------CCCceeecc---------------CcccCCceE
Q psy8662         109 RFYCGATLINNL-YVLTAAHCVHQ-----------------------GLGIWVTIR---------------GKSFSNKTG  149 (260)
Q Consensus       109 ~~~C~GtLIs~~-~VLTAAhCv~~-----------------------~~~i~l~~~---------------~~~~~~~~~  149 (260)
                      .+.|+|+||+++ ||||+|||+..                       .+||.|...               .....++.+
T Consensus        55 ~~~gsG~iI~~~g~ILTnaHvv~~~~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl~~~~~~~~~~~l~~s~~~~~G~~v  134 (239)
T 1l1j_A           55 ASLGSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKFPYLEFGDSDKVKIGEWA  134 (239)
T ss_dssp             EEEEEEEEEETTTEEEEEHHHHSSCSSCEEECTTSCEEEBCCCEEETTTTEEEEEBCCSSSCCCCCEECCGGGCCTTCEE
T ss_pred             CceEEEEEEeCCCEEEEChHHhCCCCEEEEEECCCCEEEEEEEEEcCCCCEEEEEEcCCCCCCceEEecCccCCccccEE
Confidence            568999999986 99999999854                       223333111               112357889


Q ss_pred             EEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC-CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEE
Q psy8662         150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVV  228 (260)
Q Consensus       150 ~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~-~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~  228 (260)
                      ++.||+....        +.+..-+++...|...... ......+||+.     ...|+|||||||+... +  .|+||+
T Consensus       135 ~~iG~p~g~~--------~~vt~Givs~~~r~~~~~~~~~~~~~~i~td-----a~i~~G~SGGPLv~~~-G--~vvGI~  198 (239)
T 1l1j_A          135 IAIGNPLGFQ--------HTVTVGVVSATNRRIPKPDGSGYYVGLIQTD-----AAINPGNSGGPLLNIH-G--EVIGIN  198 (239)
T ss_dssp             EEEECTTSSS--------CEEEEEEEEEEEEEEECTTSSCEEEEEEEES-----SCCCTTTTTSEEECSS-S--EEEEEE
T ss_pred             EEEECCCCCC--------CcEEEEEEeccccccccCCCccccCCEEEEC-----CCCCCCCccHHhccCC-C--eEEEEE
Confidence            9999964321        1122223322222100000 00123578873     5789999999998543 2  699999


Q ss_pred             eeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         229 SWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       229 S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      +++..-.....-+....+...++++++.++
T Consensus       199 s~~~~~~~~~g~~faIP~~~~~~~~~~l~~  228 (239)
T 1l1j_A          199 TAIVNPQEAVNLGFAIPINTVKKFLDTILT  228 (239)
T ss_dssp             CCCSCCCSCCSCEEEEEHHHHHHHHGGGCC
T ss_pred             eeeecCCCcCceEEEEEHHHHHHHHHHHHH
Confidence            998651111234567788888888887654

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=99.20  E-value=5.9e-11  Score=106.52  Aligned_cols=134  Identities=13%  Similarity=0.076  Sum_probs=83.5

Q ss_pred             eeeeeEEEeCC-EEEeccccccc-----------------------CCCceeec---------------cCcccCCceEE
Q psy8662         110 FYCGATLINNL-YVLTAAHCVHQ-----------------------GLGIWVTI---------------RGKSFSNKTGI  150 (260)
Q Consensus       110 ~~C~GtLIs~~-~VLTAAhCv~~-----------------------~~~i~l~~---------------~~~~~~~~~~~  150 (260)
                      -.++|+||+++ ||||+|||+..                       .+||.|..               ......++.++
T Consensus        53 g~GSG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl~~~~~~~~~i~l~~s~~~~~G~~v~  132 (348)
T 3qo6_A           53 GSGSGFVWDKQGHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSADLLVGQKVF  132 (348)
T ss_dssp             EEEEEEEEETTTEEEECHHHHTTCSEEEEECTTSCEEEEEEEEEEGGGTEEEEECCCCGGGCCCCCBCCSTTCCTTCEEE
T ss_pred             ceEEEEEEeCCCEEEECHHHhCCCcEEEEEECCCCEEEEEEEEEcCcCCEEEEEEcCCCCCceeEEecCcccCCCCCEEE
Confidence            36999999998 99999999864                       23333311               11223578899


Q ss_pred             EEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEee
Q psy8662         151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW  230 (260)
Q Consensus       151 v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~  230 (260)
                      +.||+.....     .+....+..+....|... .. .....+++.     ....|.|||||||+... +  .|+||+|+
T Consensus       133 ~iG~p~g~~~-----~~~~g~vs~~~~~~~~~~-~~-~~~~~~i~~-----da~i~~G~SGGPLvn~~-G--~vvGI~s~  197 (348)
T 3qo6_A          133 AIGNPFGLDH-----TLTTGVISGLRREISSAA-TG-RPIQDVIQT-----DAAINPGNSGGPLLDSS-G--TLIGINTA  197 (348)
T ss_dssp             EEECGGGCTT-----EEEEEEEEEEEEEECCSS-SS-SCEEEEEEE-----CSCCCTTCTTCEEECTT-S--CEEEEEEE
T ss_pred             EEECCCCCCC-----cEeEEEEEeecccccccc-CC-CcccCEEEE-----eCCcCCCCcHHHhhCCC-C--eEEEEEEe
Confidence            9999754321     233333333332222211 00 011123443     25789999999998643 3  59999999


Q ss_pred             CCC-CCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         231 GEG-CAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       231 g~~-C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      +.. ++.....+.+..+...++||++.++
T Consensus       198 ~~~~~~~~~g~gfaiP~~~~~~~~~~l~~  226 (348)
T 3qo6_A          198 IYSPSGASSGVGFSIPVDTVGGIVDQLVR  226 (348)
T ss_dssp             EECSSSSCSSCEEEEEHHHHHHHHHHHHH
T ss_pred             eecCCCCcccEEEEEEecchHHHHHHHHh
Confidence            753 3333446788999999999998765

>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A

Probab=99.13  E-value=8.2e-10  Score=93.77  Aligned_cols=131  Identities=12%  Similarity=0.104  Sum_probs=79.2

Q ss_pred             eeeeeEEEeCC-EEEeccccccc-----------------------CCCceeec--------------cCcccCCceEEE
Q psy8662         110 FYCGATLINNL-YVLTAAHCVHQ-----------------------GLGIWVTI--------------RGKSFSNKTGIV  151 (260)
Q Consensus       110 ~~C~GtLIs~~-~VLTAAhCv~~-----------------------~~~i~l~~--------------~~~~~~~~~~~v  151 (260)
                      ..++|+||+++ ||||+|||+..                       .+||.|..              ......+..+++
T Consensus        53 ~~GsG~ii~~~G~IlTaaHvv~~~~~~~V~~~~g~~~~a~vv~~d~~~DlAll~l~~~~~~~~~~l~~~~~~~~G~~v~~  132 (237)
T 3lgi_A           53 TLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINARRVPHIGDVVLA  132 (237)
T ss_dssp             EEEEEEEEETTTEEEEEHHHHTTCSEEEEECTTSCEEEEEEEEEETTTTEEEEECCCSSCCCCCCCCTTCCCCTTBEEEE
T ss_pred             eEEEEEEEeCCCEEEEeeeecCCCCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEecCCCCCceEeccCcccCCCCCEEEE
Confidence            47999999998 99999999864                       23333311              112235778899


Q ss_pred             EeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC
Q psy8662         152 TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG  231 (260)
Q Consensus       152 ~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g  231 (260)
                      .||+....     ..+....+..+....+..     ......++..     ...|.|||||||+... +  .|+||+|++
T Consensus       133 ~G~p~~~~-----~~~~~g~vs~~~~~~~~~-----~~~~~~i~~d-----~~i~~G~SGGPlv~~~-G--~vvGI~s~~  194 (237)
T 3lgi_A          133 IGNPYNLG-----QTITQGIISATGRIGLNP-----TGRQNFLQTD-----ASINHGNSGGALVNSL-G--ELMGINTLS  194 (237)
T ss_dssp             EECGGGSC-----SEEEEEEEEEECCSSCCT-----TSCSCCEEEC-----SCCCTTCTTCEEECTT-C--CEEEEECCC
T ss_pred             EECCCCCC-----CcEEEEEEEecccccccC-----CCcCCEEEEc-----CccCCCCchHHeeCCC-C--eEEEEEeee
Confidence            99975321     122233333332221111     1223455552     4679999999999642 3  599999997


Q ss_pred             CCCCC----CCCCcEEEechhhHHHHHHHhh
Q psy8662         232 EGCAQ----ENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       232 ~~C~~----~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ..-..    ...-+....+...++++++.++
T Consensus       195 ~~~~~~~~~~~g~~~aip~~~i~~~~~~l~~  225 (237)
T 3lgi_A          195 FDKSNDGETPEGIGFAIPFQLATKIMDKLIR  225 (237)
T ss_dssp             CCCCTTSCCCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             eccCCCCcCcCceEEEEEHHHHHHHHHHHHH
Confidence            54321    1123555677788888887665

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=99.12  E-value=5.4e-10  Score=98.98  Aligned_cols=132  Identities=14%  Similarity=0.125  Sum_probs=80.5

Q ss_pred             eeeeeeEEEeCC-EEEeccccccc-----------------------CCCceeecc--------------CcccCCceEE
Q psy8662         109 RFYCGATLINNL-YVLTAAHCVHQ-----------------------GLGIWVTIR--------------GKSFSNKTGI  150 (260)
Q Consensus       109 ~~~C~GtLIs~~-~VLTAAhCv~~-----------------------~~~i~l~~~--------------~~~~~~~~~~  150 (260)
                      ...|+|+||+++ ||||+|||+..                       .+|+.|...              .....+..++
T Consensus        41 ~~~gsG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~~~~~~~~~~~l~~~~~~~~G~~v~  120 (318)
T 1te0_A           41 RTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFEALLVGSDSLTDLAVLIIKATGGLPTIPINARRVPHIGDVVL  120 (318)
T ss_dssp             EEEEEEEECSTTCEEEEEHHHHTTCSEEEEECTTSCEEEEEEEEEETTTTEEEEECCCSSCCCCCCCCTTCCCCTTCEEE
T ss_pred             CccEEEEEEeCCCEEEECHHHcCCCCEEEEEeCCCCEEEEEEEEeCCCceEEEEEEeCCCCCceEEeeCccCCCCCCEEE
Confidence            478999999998 99999999854                       223333111              1123567888


Q ss_pred             EEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEee
Q psy8662         151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW  230 (260)
Q Consensus       151 v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~  230 (260)
                      +.||.....     .   .+..-+++.... . .+.......++|+.     ...|+|+|||||+... +  .|+||+++
T Consensus       121 ~~G~p~g~~-----~---~~~~g~vs~~~~-~-~~~~~~~~~~i~~d-----~~~~~G~SGGPl~~~~-G--~vvGI~s~  182 (318)
T 1te0_A          121 AIGNPYNLG-----Q---TITQGIISATGR-I-GLNPTGRQNFLQTD-----ASINHGNSGGALVNSL-G--ELMGINTL  182 (318)
T ss_dssp             EECCCSSSS-----C---CEEEEEEEECCC-C-CCCTTCSCCSEEES-----SCCCTTTTTSEEECTT-C--CEEEEEEC
T ss_pred             EEEcCCCCC-----C---cEEeeEEecccc-c-ccCCCCcCCEEEEC-----CCCCCCCCcCceECCC-C--eEEEEEee
Confidence            889743211     1   122223322211 1 11112345688873     5789999999999643 3  59999999


Q ss_pred             CCCCC----CCCCCcEEEechhhHHHHHHHhh
Q psy8662         231 GEGCA----QENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       231 g~~C~----~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      +..-.    ....-+.+..+...++|+.+.++
T Consensus       183 ~~~~~~~~~~~~~~~~aip~~~i~~~l~~l~~  214 (318)
T 1te0_A          183 SFDKSNDGETPEGIGFAIPFQLATKIMDKLIR  214 (318)
T ss_dssp             CSSSSSSCCSCCSCEEEEEHHHHHHHHHHHHH
T ss_pred             eeccCCccccccceEEeccHHHHHHHHHHHHH
Confidence            75421    11223567888888888887654

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=99.11  E-value=1.5e-10  Score=102.91  Aligned_cols=127  Identities=14%  Similarity=0.104  Sum_probs=79.3

Q ss_pred             eeeeeeEEEeCC-EEEeccccccc-----------------------CCCceeecc--------------CcccCCceEE
Q psy8662         109 RFYCGATLINNL-YVLTAAHCVHQ-----------------------GLGIWVTIR--------------GKSFSNKTGI  150 (260)
Q Consensus       109 ~~~C~GtLIs~~-~VLTAAhCv~~-----------------------~~~i~l~~~--------------~~~~~~~~~~  150 (260)
                      ...|+|+||+++ ||||+|||+..                       .+|+.|...              .....++.++
T Consensus        46 ~~~gsG~iI~~~G~IlT~aHvv~~~~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl~~~~~~~~~~l~~~~~~~~G~~v~  125 (325)
T 1lcy_A           46 ISNGSGFVVAADGLIVTNAHVVADRRRVRVRLLSGDTYEAVVTAVDPVADIATLRIQTKEPLPTLPLGRSADVRQGEFVV  125 (325)
T ss_dssp             EEEEEEEEEETTTEEEECHHHHTTCSEEEEECTTSCEEEEEEEEEETTTTEEEEECCCSSCCCCCCBCCGGGCCTTCEEE
T ss_pred             cccEEEEEEeCCCEEEECHHHcCCCCEEEEEeCCCCEEEEEEEEECCCCCEEEEEEcCCCCCceEEecccccCCCCCEEE
Confidence            367999999998 99999999854                       233333111              1123577888


Q ss_pred             EEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC-CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEe
Q psy8662         151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVS  229 (260)
Q Consensus       151 v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~-~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S  229 (260)
                      +.||+....        +.+..-+++...|....++ ......++|+.     ...|+|||||||+... +  .|+||++
T Consensus       126 ~~G~p~~~~--------~~v~~G~vs~~~~~~~~~g~~~~~~~~i~~d-----~~~~~G~SGGPl~~~~-G--~vVGI~s  189 (325)
T 1lcy_A          126 AMGSPFALQ--------NTITSGIVSSAQRPARDLGLPQTNVEYIQTD-----AAIDFGNAGGPLVNLD-G--EVIGVNT  189 (325)
T ss_dssp             ECCCTTSSS--------SCCEEEEBCSCSCC---------CCCCEEES-----SCCSTTTTTSEEEETT-S--CEEEEEE
T ss_pred             EEECCCCCC--------CcEEeEEEecccccccccCCCCCCCCEEEEc-----CCCCCCCccccEECCC-C--EEEEEEe
Confidence            999975321        2344556666666432121 12356789984     5679999999999643 3  5999999


Q ss_pred             eCCCCCCCCCCcEEEechhhHHHHHH
Q psy8662         230 WGEGCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       230 ~g~~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      ++...    .-+....+...++||++
T Consensus       190 ~~~~~----g~~~aip~~~i~~~l~~  211 (325)
T 1lcy_A          190 MKVTA----GISFAIPSDRLREFLHR  211 (325)
T ss_dssp             EEEET----TEEEEEEHHHHHHHTCC
T ss_pred             EeecC----CeeEEEEHHHHHHHHHH
Confidence            87531    12445566666666544

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=99.05  E-value=1.8e-09  Score=96.20  Aligned_cols=130  Identities=12%  Similarity=0.100  Sum_probs=73.0

Q ss_pred             eeeeeeEEEeCC-EEEeccccccc-----------------------CCCceeec--------------cCcccCCceEE
Q psy8662         109 RFYCGATLINNL-YVLTAAHCVHQ-----------------------GLGIWVTI--------------RGKSFSNKTGI  150 (260)
Q Consensus       109 ~~~C~GtLIs~~-~VLTAAhCv~~-----------------------~~~i~l~~--------------~~~~~~~~~~~  150 (260)
                      ...++|+||+++ ||||||||+..                       .+||.|..              ......++.++
T Consensus        45 ~~~GSG~iI~~~G~ILTaaHvv~~~~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~l~~~~~~~~~~l~~~~~~~~G~~v~  124 (332)
T 3num_A           45 VASGSGFIVSEDGLIVTNAHVVTNKHRVKVELKNGATYEAKIKDVDEKADIALIKIDHQGKLPVLLLGRSSELRPGEFVV  124 (332)
T ss_dssp             EEEEEEEEEETTTEEEECTTTCCTTSEEEEEETTSCEEEEEEEEEETTTTEEEEEECCSSCCCCCCBCCTTSCCTTCEEE
T ss_pred             eeeEEEEEEeCCCEEEEChHHcCCCCEEEEEECCCCEEEEEEEEecCCCCeEEEEEcCCCCCceeeecCcccCCCCCEEE
Confidence            357999999998 99999999864                       23433311              11223578899


Q ss_pred             EEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEee
Q psy8662         151 VTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW  230 (260)
Q Consensus       151 v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~  230 (260)
                      +.||+....     ..+....+..+....+...+.  .....++++.     ...|.|||||||+...+   .|+||+|+
T Consensus       125 ~~G~p~g~~-----~~~~~g~vs~~~~~~~~~~~~--~~~~~~i~~d-----~~i~~G~SGGPlv~~~G---~vvGI~s~  189 (332)
T 3num_A          125 AIGSPFSLQ-----NTVTTGIVSTTQRGGKELGLR--NSDMDYIQTD-----AIINYGNAGGPLVNLDG---EVIGINTL  189 (332)
T ss_dssp             EECC----------CCEEEEEEEEC----------------CCEEES-----SCCCTTTTTSEEEETTS---CEEEEEEE
T ss_pred             EEECCCCCC-----cceeeeEEEeecccccccCcC--CCcCCEEEEE-----CCcCCCCcHHHhhCCCC---cEEEEEee
Confidence            999975321     122222333332222221110  1112345542     45678999999996433   49999999


Q ss_pred             CCCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         231 GEGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       231 g~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +...+    -+....+.....||.+.+
T Consensus       190 ~~~~g----~~~aip~~~i~~~l~~~~  212 (332)
T 3num_A          190 KVTAG----ISFAIPSDKIKKFLTESH  212 (332)
T ss_dssp             EEETT----EEEEEEHHHHHHHHHHHC
T ss_pred             Eeccc----ceEEECHHHHHHHHHHHh
Confidence            76422    255677777778887653

>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1

Probab=98.92  E-value=3.4e-09  Score=86.88  Aligned_cols=53  Identities=25%  Similarity=0.246  Sum_probs=42.9

Q ss_pred             CCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHHHH
Q psy8662         191 PNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       191 ~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI  253 (260)
                      .+++|+.     ...|+|||||||++.+    .++||+|++.. |.. ..|++|++|..+++.+
T Consensus       129 ~~~i~t~-----~~~~~GdSGgpl~~~~----~~vGi~s~~~~~~~~-~~~~~~~~i~~~~~~l  182 (187)
T 1hpg_A          129 YNMVRTT-----ACSAGGDSGGAHFAGS----VALGIHSGSSGCSGT-AGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEEEEEC-----CCCCTTCTTCEEEETT----EEEEEEEEESCCBTT-BCCCEEEEHHHHHHHH
T ss_pred             eeeEEec-----cccCCCCCCCeEEECC----EEEEEEEeeCCCCCC-CCceEEEEHHHHHHHc
Confidence            4578874     5678999999999753    79999999975 654 5689999999998765

>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}

Probab=98.89  E-value=1.5e-08  Score=86.57  Aligned_cols=132  Identities=18%  Similarity=0.090  Sum_probs=75.6

Q ss_pred             eeeeeeEEEeCC--EEEeccccccc-----------------------CCCceeecc--------------CcccCCceE
Q psy8662         109 RFYCGATLINNL--YVLTAAHCVHQ-----------------------GLGIWVTIR--------------GKSFSNKTG  149 (260)
Q Consensus       109 ~~~C~GtLIs~~--~VLTAAhCv~~-----------------------~~~i~l~~~--------------~~~~~~~~~  149 (260)
                      ...++|.||+++  ||||+|||+..                       .+||.|...              .....++.+
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHvv~~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~l~~s~~~~~G~~v  141 (245)
T 3sti_A           62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFA  141 (245)
T ss_dssp             --CCEEEEEETTTTEEEECGGGC----CEEEECTTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCCGGGCCTTBEE
T ss_pred             cceEEEEEEeCCCCEEEEcHHHhCCCCEEEEEECCCCEEEEEEEEecCCCCEEEEEeccCCCCceeeecCcCCCCCCCEE
Confidence            357999999998  99999999864                       234433111              112357788


Q ss_pred             EEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEe
Q psy8662         150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVS  229 (260)
Q Consensus       150 ~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S  229 (260)
                      ++.||.....     .   .+..-+++...+..  ........++|+.     ...|.|+|||||+... +  .|+||.+
T Consensus       142 ~aiG~P~g~~-----~---~vt~G~vs~~~~~~--~~~~~~~~~i~td-----a~i~~G~SGGPLvn~~-G--~vVGI~s  203 (245)
T 3sti_A          142 VAVGNPFGLG-----Q---TATSGIVSALGRSG--LNLEGLENFIQTD-----ASINRGNSGGALLNLN-G--ELIGINT  203 (245)
T ss_dssp             EEEECGGGSC-----C---EEEEEEEEECSSCS--SCCTTCSSCEEES-----SCCCTTTTTSEEECTT-S--CEEEEEE
T ss_pred             EEEECCCCCC-----C---cEEeeEEeeecccc--cCCCCccCEEEEc-----CCcCCCcchhHeecCC-C--eEEEEEE
Confidence            8999753221     1   12222332222211  1112234567763     4678999999998543 2  5999999


Q ss_pred             eCCCCC-CCCCCcEEEechhhHHHHHHHhh
Q psy8662         230 WGEGCA-QENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       230 ~g~~C~-~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      +..... ....-+....+...++++++.++
T Consensus       204 ~~~~~~~~~~g~~faIP~~~~~~~~~~l~~  233 (245)
T 3sti_A          204 AILAPGGGSVGIGFAIPSNMARTLAQQLID  233 (245)
T ss_dssp             CCC------CCCEEEEEHHHHHHHHHHHHH
T ss_pred             eEECCCCCcceEEEEEeHHHHHHHHHHHHH
Confidence            975432 11123555677777888877664

>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis}

Probab=98.89  E-value=5.7e-10  Score=91.72  Aligned_cols=42  Identities=36%  Similarity=0.509  Sum_probs=35.2

Q ss_pred             cCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHHHH
Q psy8662         207 QGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       207 ~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI  253 (260)
                      +|||||||+++  +  .++||+|++.. |.. ..+++|++|..+++|.
T Consensus       134 ~GDSGgpl~~~--~--~~vGi~s~~~~~c~~-~~~~~~~pi~~~l~~~  176 (189)
T 2ea3_A          134 PGDSGGSLLAG--N--QAQGVTSGGSGNCRT-GGTTFFQPVNPILQAY  176 (189)
T ss_dssp             TTCTTCEEEET--T--EEEEEEEEEEEETTT-EEEEEEEEHHHHHHHH
T ss_pred             CCCccCeEEEC--C--EEEEEEeecCCCCCC-CCcEEEEEHHHHHHHC
Confidence            69999999963  3  69999999875 554 4589999999999986

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.51  E-value=1.2e-06  Score=78.25  Aligned_cols=131  Identities=18%  Similarity=0.094  Sum_probs=73.6

Q ss_pred             eeeeeeEEEeCC--EEEeccccccc-----------------------CCCceeecc--------------CcccCCceE
Q psy8662         109 RFYCGATLINNL--YVLTAAHCVHQ-----------------------GLGIWVTIR--------------GKSFSNKTG  149 (260)
Q Consensus       109 ~~~C~GtLIs~~--~VLTAAhCv~~-----------------------~~~i~l~~~--------------~~~~~~~~~  149 (260)
                      ...++|.||+++  ||||+|||+..                       .+||.|...              .....++.+
T Consensus        62 ~~~GSGfiI~~~~G~IlTnaHVv~~~~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~~~~~~~l~~s~~~~~G~~V  141 (345)
T 3stj_A           62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFA  141 (345)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTTEEEEEEECTTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCCGGGCCTTBEE
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCCCCEEEEEeCCCcEEEEEEEEEcCCCCEEEEEEcccCCCceEeecCcccCCCCCEE
Confidence            457999999997  99999999865                       234443211              112356788


Q ss_pred             EEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEe
Q psy8662         150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVS  229 (260)
Q Consensus       150 ~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S  229 (260)
                      ++.||.....        ..+..-+++...+..  .........+++.     ...|.|+|||||+... |  .|+||.+
T Consensus       142 ~aiG~p~g~~--------~~vt~G~Vs~~~~~~--~~~~~~~~~iq~d-----a~i~~GnSGGPLvn~~-G--~vVGI~s  203 (345)
T 3stj_A          142 VAVGNPFGLG--------QTATSGIVSALGRSG--LNLEGLENFIQTD-----ASINRGNSGGALLNLN-G--ELIGINT  203 (345)
T ss_dssp             EEEECGGGCS--------CEEEEEEEEEEEECC--SSSSSSCCEEEEC-----SCCCTTCTTCEEECTT-S--CEEEEEE
T ss_pred             EEEECCCCCC--------CcEEeeEEeeecccc--cCCCCccCEEEEe-----cccCCCcCccceeCCC-C--EEEEEEe
Confidence            8899853321        112222222221111  1111123456652     5678999999998643 2  5999998


Q ss_pred             eCCCC-CCCCCCcEEEechhhHHHHHHHh
Q psy8662         230 WGEGC-AQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       230 ~g~~C-~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +...- +....-+....+.....++++.+
T Consensus       204 ~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  232 (345)
T 3stj_A          204 AILAPGGGSVGIGFAIPSNMARTLAQQLI  232 (345)
T ss_dssp             EEECTTSSCSSCEEEEEHHHHHHHHHHHH
T ss_pred             ccccCCCCcceeEEEEehHHHHHHHHHHH
Confidence            75432 12112244455555556665544

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.14  E-value=5.3e-05  Score=69.70  Aligned_cols=131  Identities=18%  Similarity=0.108  Sum_probs=70.1

Q ss_pred             eeeeeeEEEeCC--EEEeccccccc-----------------------CCCceeecc--------------CcccCCceE
Q psy8662         109 RFYCGATLINNL--YVLTAAHCVHQ-----------------------GLGIWVTIR--------------GKSFSNKTG  149 (260)
Q Consensus       109 ~~~C~GtLIs~~--~VLTAAhCv~~-----------------------~~~i~l~~~--------------~~~~~~~~~  149 (260)
                      ...++|.+|+++  ||||+|||+..                       .+|+.+...              .....+..+
T Consensus        62 ~~~GSGfii~~~~G~IlTn~Hvv~~a~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv~~~~~l~~~~l~~s~~~~~G~~v  141 (436)
T 4a8c_A           62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFA  141 (436)
T ss_pred             ceEEEEEEEECCCCEEEECHHHhCCCCEEEEEeCCCCEEEEEEEEEcCCCCEEEEEecCCCCCceEeccCcccCCCCCEE
Confidence            457999999997  99999999865                       233333111              112246777


Q ss_pred             EEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEe
Q psy8662         150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVS  229 (260)
Q Consensus       150 ~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S  229 (260)
                      ++.||.....     ...   ..-+++...+..  ....-....+.+     +...|.|+|||||+...+   .++||.+
T Consensus       142 ~aiG~P~g~~-----~~v---t~G~vs~~~r~~--~~~~~~~~~iq~-----da~i~~GnSGGPl~n~~G---~vvGI~~  203 (436)
T 4a8c_A          142 VAVGNPFGLG-----QTA---TSGIVSALGRSG--LNLEGLENFIQT-----DASINRGNAGGALLNLNG---ELIGINT  203 (436)
T ss_pred             EEEEcCCCCC-----ccE---EEEEEeeecccc--cCCCCccCEEEE-----cCccCCCCCcCcccCCCC---EEEEEEe
Confidence            7888743211     111   122222211111  111112234544     256788999999986443   6999998


Q ss_pred             eCCCCC-CCCCCcEEEechhhHHHHHHHh
Q psy8662         230 WGEGCA-QENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       230 ~g~~C~-~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      +..... ....-+....+...++++++.+
T Consensus       204 ~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  232 (436)
T 4a8c_A          204 AILAPGGGSVGIGFAIPSNMARTLAQQLI  232 (436)
T ss_pred             eeccCCCCceeEEEEEehHHHHHHHHHHH
Confidence            865322 1111233344455555555544

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.14  E-value=2.2e-05  Score=72.52  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             eeeeeeEEEeC--CEEEeccccccc-----------------------CCCceeecc-------------CcccCCceEE
Q psy8662         109 RFYCGATLINN--LYVLTAAHCVHQ-----------------------GLGIWVTIR-------------GKSFSNKTGI  150 (260)
Q Consensus       109 ~~~C~GtLIs~--~~VLTAAhCv~~-----------------------~~~i~l~~~-------------~~~~~~~~~~  150 (260)
                      .-.++|.+|++  .||||+|||+..                       .+|+++...             .....+..++
T Consensus        76 ~~~GSGfiI~~~~G~IlTn~HVv~~a~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv~~~~l~~~~l~~s~~~~~G~~V~  155 (451)
T 3pv2_A           76 ESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAKNLKSLVIGDSDKLEVGDFVV  155 (451)
T ss_dssp             EEEEEEEEEETTTTEEEECHHHHTTEEEEEEECTTSCEEECEEEEEETTTTEEEEECCCSSCCCCCBCCGGGCCTTCEEE
T ss_pred             ceeEEEEEEECCCCEEEEChHHhCCCCEEEEEEcCCCEEEEEEEecCcCCcEEEEEEcCcCCceeEecCcccCCCCCEEE
Confidence            35799999996  499999999865                       234443211             1123578888


Q ss_pred             EEe--eeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEE
Q psy8662         151 VTG--WGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVV  228 (260)
Q Consensus       151 v~G--wg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~  228 (260)
                      +.|  ||.....  .........+..+.....     .......++++.     ...+.|+|||||+...+   .|+||.
T Consensus       156 aiG~P~G~~~~~--~~~~vt~Givs~~~r~~~-----~~~~~~~~iqtd-----a~i~~GnSGGPl~n~~G---~VIGI~  220 (451)
T 3pv2_A          156 AIGNPFGLNSFG--NSQSATFGIVSALKRSDL-----NIEGVENFIQTD-----AAINPGNSGGALVNAKG---ELIGIN  220 (451)
T ss_dssp             EEECCCCC-------CCEEEEEEEEEEC---------------CCEEES-----SCCCGGGTTSEEEETTC---CEEEEE
T ss_pred             EEECCCCccccc--cCCceeEEEEeecccccc-----CCCCcceEEEEe-----cccCCCCCcCcccCCCC---eEEEEE
Confidence            999  5533211  111222222333322211     111123456653     46688999999996443   599999


Q ss_pred             eeCCC-CCCCCCCcEEEechhhHHHHHHHh
Q psy8662         229 SWGEG-CAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       229 S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      ++... .+....-+....+....+++++.+
T Consensus       221 t~~~~~~~~~~g~gfaIP~~~~~~~~~~l~  250 (451)
T 3pv2_A          221 TAILSPYGGNVGIGFAIPINMVKDVAQQII  250 (451)
T ss_dssp             ECCC------CCCEEEEEHHHHHHHHHHHH
T ss_pred             eEeecCCCCccceeeeehhHHHHHHHHHHH
Confidence            98643 211112344566666666666654

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=97.57  E-value=0.0011  Score=61.20  Aligned_cols=130  Identities=15%  Similarity=0.094  Sum_probs=68.1

Q ss_pred             eeeeeeEEEeCC--EEEeccccccc-----------------------CCCceeecc--------------CcccCCceE
Q psy8662         109 RFYCGATLINNL--YVLTAAHCVHQ-----------------------GLGIWVTIR--------------GKSFSNKTG  149 (260)
Q Consensus       109 ~~~C~GtLIs~~--~VLTAAhCv~~-----------------------~~~i~l~~~--------------~~~~~~~~~  149 (260)
                      ...|+|.+|+++  ||||++||+..                       .+|+.+...              .....++..
T Consensus        85 ~~~GSG~ii~~~~g~IlTn~HVv~~a~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv~~~~~~~~~~l~~s~~~~~G~~V  164 (448)
T 1ky9_A           85 MALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPKNLTAIKMADSDALRVGDYT  164 (448)
T ss_dssp             EEEEEEEEEETTTTEEEEEHHHHTTEEEEEEEETTSCEEEEEEEEEETTTTEEEEEESSCCSCCCCCBCCGGGCCTTCEE
T ss_pred             ccEEEEEEEECCCCEEEEChHHhCCCCEEEEEECCCCEEEEEEEEEcCCCCEEEEEecCCCCCceEEecccccCCCCCEE
Confidence            357999999975  99999999865                       223332111              111246677


Q ss_pred             EEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEe
Q psy8662         150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVS  229 (260)
Q Consensus       150 ~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S  229 (260)
                      ++.||-...     ........+..+....     ....-...++++.     ...+.|+|||||+...+   .++||.+
T Consensus       165 ~aiG~P~g~-----~~tvt~Givs~~~r~~-----~~~~~~~~~iqtd-----a~i~~GnSGGpl~n~~G---~vvGI~~  226 (448)
T 1ky9_A          165 VAIGNPFGL-----GETVTSGIVSALGRSG-----LNAENYENFIQTD-----AAINRGNAGGALVNLNG---ELIGINT  226 (448)
T ss_dssp             EEEECTTSS-----SCEEEEEEEEEESSCC----------CCCCEEES-----CCCTTSCCCSEEECTTS---CEEEEEE
T ss_pred             EEEECCCCC-----CCeEEeEEEeeccccc-----cCCCCccCEEEEc-----CCCCCCCCCCeeECCCC---EEEEEEE
Confidence            777763211     1111222222222110     0001123455553     45678999999996433   6999999


Q ss_pred             eCCCCC-CCCCCcEEEechhhHHHHHHH
Q psy8662         230 WGEGCA-QENYPGVYARVNRYLTWIKNN  256 (260)
Q Consensus       230 ~g~~C~-~~~~p~vyt~V~~y~~WI~~~  256 (260)
                      ....-. ....-+...-+....+++.+.
T Consensus       227 ~~~~~~~~~~g~gfaIP~~~~~~~~~~l  254 (448)
T 1ky9_A          227 AILAPDGGNIGIGFAIPSNMVKNLTSQM  254 (448)
T ss_dssp             CSSTTSCCCSSSEEEEEHHHHHHHHHHH
T ss_pred             EeecCCCCccceeeeeecccchhhHHHH
Confidence            764311 111123345555555555543

>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ...

Probab=97.35  E-value=8.8e-05  Score=60.97  Aligned_cols=42  Identities=29%  Similarity=0.555  Sum_probs=28.0

Q ss_pred             cCCCCCceEEeeCCeeEEEEEEeeCC-----C-CC--CCCCCcEEEechhhHH
Q psy8662         207 QGDSGGPLHYANETVHHIVGVVSWGE-----G-CA--QENYPGVYARVNRYLT  251 (260)
Q Consensus       207 ~gDsGgPl~~~~~~~~~L~GI~S~g~-----~-C~--~~~~p~vyt~V~~y~~  251 (260)
                      +|||||||+... +  .++||+|++.     + |.  ....-..|..|...++
T Consensus       140 ~GDSGGPl~~~~-g--~~vGI~s~~~~~~~~~~c~~~~~~g~~f~~Pi~~vl~  189 (198)
T 2h5c_A          140 RGDSGGSWITSA-G--QAQGVMSGGNVQSNGNNCGIPASQRSSLFERLQPILS  189 (198)
T ss_dssp             TTCTTCEEECTT-C--BEEEEEEEECCCTTSBSTTSCGGGCCEEEEEHHHHHH
T ss_pred             CCcceeEEEeeC-C--EEEEEEEeecCccCCCccccccCCceEEEEEHHHHHH
Confidence            699999999422 2  6999999874     2 41  1112467888876554

>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus}

Probab=97.28  E-value=0.0016  Score=53.15  Aligned_cols=32  Identities=13%  Similarity=-0.036  Sum_probs=27.1

Q ss_pred             EEEEEecCeeeeeeEEE---eCCEEEecccccccC
Q psy8662         101 MALLMYKKRFYCGATLI---NNLYVLTAAHCVHQG  132 (260)
Q Consensus       101 ~v~l~~~~~~~C~GtLI---s~~~VLTAAhCv~~~  132 (260)
                      ++.|+..+.|+|.|+.+   ..+++||||||+...
T Consensus        18 vv~l~~~d~h~G~g~~V~~~G~~~LlTA~Hv~~~~   52 (191)
T 1zyo_A           18 LVAIKSGPTTIGFGCRTKIDGEDCLLTAHHVWCNS   52 (191)
T ss_dssp             EEEEEETTEEEEEEEEEEC--CEEEEECHHHHTSS
T ss_pred             EEEEEeCCeEEEEEEEEEECCCcEEEEChhhCcCC
Confidence            77888877999999999   668999999998664

>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca}

Probab=97.21  E-value=7.8e-05  Score=60.70  Aligned_cols=41  Identities=34%  Similarity=0.601  Sum_probs=32.4

Q ss_pred             cCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHHH
Q psy8662         207 QGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTW  252 (260)
Q Consensus       207 ~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~W  252 (260)
                      +|||||||++++    .++||+||+.. |.. ..+.+|++|..+++=
T Consensus       137 ~GDSGgpl~~~~----~~vGi~s~g~~~c~~-~~~~~~~pi~~~l~~  178 (186)
T 2pfe_A          137 GGDSGGPWLTGS----QAQGVTSGGTGDCRS-GGITFFQPINPLLSY  178 (186)
T ss_dssp             TTCTTCEEEETT----EEEEEEEEEEEETTT-EEEEEEEEHHHHHHH
T ss_pred             CCCccCeEEECC----EEEEEEeecCCCCCC-CCcEEEEEHHHHHHH
Confidence            599999999733    69999999874 544 347999999887653

>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba}

Probab=96.25  E-value=0.0016  Score=52.93  Aligned_cols=40  Identities=40%  Similarity=0.611  Sum_probs=31.6

Q ss_pred             cCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHH
Q psy8662         207 QGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLT  251 (260)
Q Consensus       207 ~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~  251 (260)
                      +|||||||++.  +  .++||+|++.. |.. ..+++|++|..+++
T Consensus       140 ~GDSGgpl~~~--~--~~vGi~s~~~~~~~~-~~~~~~~pi~~~l~  180 (188)
T 2oua_A          140 PGDSGGSFISG--T--QAQGVTSGGSGNCRT-GGTTFYQEVNPMLN  180 (188)
T ss_dssp             TTCTTCEEEET--T--EEEEEEEEEEEETTT-EEEEEEEESHHHHH
T ss_pred             CCCccceEEEC--C--EEEEEEeccCCCCCC-CCceEEEEHHHHHH
Confidence            69999999963  3  69999999864 654 34789999988764

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.00  E-value=0.037  Score=51.98  Aligned_cols=34  Identities=29%  Similarity=0.416  Sum_probs=24.5

Q ss_pred             CCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc
Q psy8662          96 HQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ  131 (260)
Q Consensus        96 ~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~  131 (260)
                      ...||+-.-  ...-.-+|.+|++.+|||.+|.+..
T Consensus        62 ~~~Pw~~~~--~~~s~GSGfiI~dG~IlTN~HVV~~   95 (539)
T 4fln_A           62 YSLPWQKQR--QFTSTGSAFMIGDGKLLTNAHCVEH   95 (539)
T ss_dssp             SSSTTSBCC--CEEEEEEEEEEETTEEEECGGGGTT
T ss_pred             CCCccccCC--ccceEEEEEEEECCEEEEChHHcCC
Confidence            356775321  1234578999999999999999865

>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta helix, heme uptake, spate, hydrolase; 2.20A {Escherichia coli} PDB: 3ak5_A

Probab=92.71  E-value=0.2  Score=50.23  Aligned_cols=50  Identities=26%  Similarity=0.409  Sum_probs=33.1

Q ss_pred             CCcCCCCCceEEee--CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         205 SCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       205 ~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .-.||||+||+..+  +++|+|+|+.+.+..-+..+  ..|.-+..  +|++++++
T Consensus       202 ~~~GDSGSPlF~yD~~~kKWvLvGv~s~g~~~g~~~--~~~~~~~~--~f~~~~~~  253 (1048)
T 1wxr_A          202 GEAGDSGSPLFAFDTVQNKWVLVGVLTAGNGAGGRG--NNWAVIPL--DFIGQKFN  253 (1048)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEEEEESSTTCSC--EEEEECCH--HHHHHHHH
T ss_pred             CCCCCCCCeeeEEEcCCCeEEEEEEecccccCCccc--ceEEEeCH--HHhhhhhh
Confidence            44699999999877  79999999998443211111  34554443  67776554

>3syj_A Adhesion and penetration protein autotransporter; bacterial aggregation and biofilm formation, SELF-associatin autotransporter (SAAT); 2.20A {Haemophilus influenzae}

Probab=87.98  E-value=0.64  Score=46.06  Aligned_cols=50  Identities=18%  Similarity=0.296  Sum_probs=31.0

Q ss_pred             CCcCCCCCceEEee--CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         205 SCQGDSGGPLHYAN--ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       205 ~C~gDsGgPl~~~~--~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .-.||||+||+..+  .++|+|+|+.+.+.+....  -..|+-+.  .+|+.+++.
T Consensus       213 g~~GDSGSPLFayD~~~~KWvl~Gv~~~~~~~~g~--~n~~~i~~--~~f~~~~~~  264 (1011)
T 3syj_A          213 GSKGDSGSPMFIYDAEKQKWLINGILREGNPFEGK--ENGFQLVR--KSYFDEIFE  264 (1011)
T ss_dssp             CCTTCTTCEEEEEETTTTEEEEEEEECC----------EEEEECC--HHHHHHHHH
T ss_pred             CCCCCCCCcceeeEcCCCeEEEEEEeeccccccCc--ccceEEec--hHHhhhhhh
Confidence            45699999999765  5899999999876543321  12354333  477777664

>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}

Probab=85.30  E-value=0.46  Score=37.26  Aligned_cols=28  Identities=18%  Similarity=0.008  Sum_probs=22.4

Q ss_pred             cCeeeeeeEEEeCCEEEecccccccCCCc
Q psy8662         107 KKRFYCGATLINNLYVLTAAHCVHQGLGI  135 (260)
Q Consensus       107 ~~~~~C~GtLIs~~~VLTAAhCv~~~~~i  135 (260)
                      .....++|.+| +.+|||++||+.....+
T Consensus        18 ~~~~~GSGfii-~g~IlTn~HVV~~~~~i   45 (163)
T 2w5e_A           18 TPEGKGTGFFS-GNDIVTAAHVVGNNTFV   45 (163)
T ss_dssp             ETTEEEEEEEE-TTEEEEEHHHHTTCSEE
T ss_pred             CCceeEEEEEE-CCEEEecHHHhCCCceE
Confidence            44567999999 99999999999764443

>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1}

Probab=81.50  E-value=2.2  Score=32.92  Aligned_cols=31  Identities=23%  Similarity=0.416  Sum_probs=26.8

Q ss_pred             CCCCCcCCCCCceEEeeCCeeEEEEEEeeCC
Q psy8662         202 EKDSCQGDSGGPLHYANETVHHIVGVVSWGE  232 (260)
Q Consensus       202 ~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~  232 (260)
                      +-++-+||-|.|.+.+.++.|+++||...+.
T Consensus       133 dLGT~PGDCGcPYvykrgn~~vv~GVHtAat  163 (185)
T 4ash_A          133 DLGTIPGDAGCPYVYKKGNTWVVIGVHVAAT  163 (185)
T ss_dssp             CCSCCTTCTTCEEEEEETTEEEEEEEEEEEC
T ss_pred             cCCCCCCCCCCceEEeeCCceEEEEEEEeec
Confidence            3456689999999999999999999998754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	260
d1xx9a_	237	b.47.1.2 (A:) Coagulation factor XI {Human (Homo s	1e-33
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	4e-33
d2f91a1	237	b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed c	4e-12
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	1e-29
g2pka.1	232	b.47.1.2 (A:,B:) Kallikrein A {Pig (Sus scrofa) [T	5e-15
d1os8a_	223	b.47.1.1 (A:) Trypsin {Streptomyces griseus, strai	3e-29
d1j16a_	223	b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicu	3e-29
d1hj8a_	222	b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon	6e-27
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	2e-26
d1z8ga1	255	b.47.1.2 (A:163-417) Hepsin, catalytic domain {Hum	1e-15
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	3e-26
d1ekbb_	235	b.47.1.2 (B:) Enteropeptidase (enterokinase light	3e-15
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	3e-26
d1npma_	225	b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [Tax	2e-14
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	9e-26
g1gj7.1	256	b.47.1.2 (A:,B:) Urokinase-type plasminogen activa	2e-13
d1fxya_	228	b.47.1.2 (A:) Coagulation factor Xa-trypsin chimer	4e-25
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	9e-25
d1ao5a_	237	b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus)	1e-15
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	1e-24
g1gg6.1	238	b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(oge	5e-12
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	2e-24
d1eaxa_	241	b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapien	2e-13
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	2e-24
d1rjxb_	247	b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Hum	6e-14
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	2e-24
d1rfna_	235	b.47.1.2 (A:) Coagulation factor IXa, protease dom	1e-15
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	2e-24
d1gdna_	224	b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxyspo	2e-14
d1hj9a_	223	b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [Tax	6e-24
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	1e-23
d2fpza1	243	b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sap	3e-13
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	1e-23
d1lo6a_	221	b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [	3e-15
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	4e-23
d1pytd_	251	b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Co	1e-09
d1op0a_	234	b.47.1.2 (A:) Venom serine protease {Hundred-pace	1e-22
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	3e-22
d1mzaa_	240	b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [Ta	6e-16
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	5e-22
d1tona_	235	b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 1	4e-13
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	7e-22
d1sgfa_	228	b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus	1e-11
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	2e-21
d2p3ub1	233	b.47.1.2 (B:16-243) Coagulation factor Xa, proteas	2e-13
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	3e-21
g1rtf.1	260	b.47.1.2 (A:,B:) Two-chain tissue plasminogen acti	4e-14
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	3e-21
g1fiw.1	274	b.47.1.2 (L:,A:) Beta-acrosin {Sheep (Ovis aries)	1e-12
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	8e-21
g1h8d.1	289	b.47.1.2 (L:,H:) Thrombin {Human (Homo sapiens) [T	2e-13
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	8e-21
d1autc_	240	b.47.1.2 (C:) Activated protein c (autoprothrombin	2e-13
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	1e-20
d1rrka1	287	b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens	1e-11
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	5e-20
d1brup_	241	b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9	9e-13
d1a7sa_	225	b.47.1.2 (A:) Heparin binding protein, HBP {Human	1e-19
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	1e-19
d1orfa_	232	b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [Ta	5e-15
d1arba_	263	b.47.1.1 (A:) Achromobacter protease {Achromobacte	3e-19
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	9e-19
d1si5h_	234	b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human	1e-12
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	9e-19
d1elta_	236	b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxI	3e-12
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	1e-18
d1gvkb_	240	b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9	5e-13
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	1e-18
d1azza_	226	b.47.1.2 (A:) Crab collagenase {Atlantic sand fidd	5e-15
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	2e-18
d1fi8a_	227	b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus)	4e-10
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	3e-18
d2bz6h1	254	b.47.1.2 (H:16-257) Coagulation factor VIIa {Human	3e-15
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	6e-18
d1bioa_	228	b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxI	7e-15
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	9e-18
d1m9ua_	241	b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [Tax	1e-12
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	3e-17
d3rp2a_	224	b.47.1.2 (A:) Chymase II (mast cell proteinase II)	9e-11
d1p3ca_	215	b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus int	8e-17
d1fuja_	221	b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapie	1e-16
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	3e-16
d1fona_	232	b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III	8e-10
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	6e-16
d1gvza_	237	b.47.1.2 (A:) Prostate specific antigen (PSA kalli	2e-15
d1hpga_	187	b.47.1.1 (A:) Glutamic acid-specific protease {Str	9e-16
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	1e-15
d1eq9a_	222	b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Re	2e-14
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	3e-15
d1fq3a_	227	b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [Ta	1e-11
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	5e-15
d1nn6a_	224	b.47.1.2 (A:) Chymase (mast cell protease I) {Huma	2e-10
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	5e-15
d2qy0b1	240	b.47.1.2 (B:447-686) Complement C1R protease, cata	2e-13
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	1e-14
d2hlca_	230	b.47.1.2 (A:) HL collagenase {Common cattle grub (	9e-11
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	2e-14
d1q3xa1	242	b.47.1.2 (A:445-686) Mannan-binding lectin serine	3e-13
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	5e-14
d2z7fe1	218	b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens)	1e-10
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	9e-14
d1eufa_	224	b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId:	4e-11
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	2e-13
d1elva1	259	b.47.1.2 (A:410-668) Complement C1S protease, cata	2e-11
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	1e-12
d1t32a1	224	b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapie	9e-11
d2o8la1	216	b.47.1.1 (A:1-216) V8 protease {Staphylococcus aur	2e-11
d2sgaa_	181	b.47.1.1 (A:) Protease A {Streptomyces griseus, st	5e-04
d1agja_	242	b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A	8e-04
d1qtfa_	246	b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus	0.001

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (300), Expect = 1e-33
 Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 3/193 (1%)

Query: 65  VKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 124
              V+  K      G +N+           V +          +  Y  A L     V  
Sbjct: 46  FYGVESPKILRVYSGILNQSEIKEDTSFFGVQEIIIHDQYKMAESGYDIALLKLETTV-- 103

Query: 125 AAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA 184
             +   Q      +   ++       VTGWG +K      +TL + ++P+++N EC+K  
Sbjct: 104 -NYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQKRY 162

Query: 185 YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYA 244
             ++IT  M+CAGY +G KD+C+GDSGGPL   +  V H+VG+ SWGEGCAQ   PGVY 
Sbjct: 163 RGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYT 222

Query: 245 RVNRYLTWIKNNT 257
            V  Y+ WI   T
Sbjct: 223 NVVEYVDWILEKT 235

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score =  118 bits (296), Expect = 4e-33
 Identities = 57/188 (30%), Positives = 91/188 (48%), Gaps = 2/188 (1%)

Query: 73  CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQG 132
                   +      +   V    +       +     +    L N++ +L  +  +   
Sbjct: 50  DDYENPSGLQIVAGELDMSVNEGSEQIITVSKIILHENFDYNLLDNDISLLKLSGSLTFN 109

Query: 133 LGIWV--TIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRIT 190
             +           +    IVTGWG   +GG+T D L +V VP++S+ +C+     + I 
Sbjct: 110 DNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCRADYGADEIL 169

Query: 191 PNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYL 250
            +M+CAG P+G KDSCQGDSGGPL  ++    ++ G+VSWG GCA+  YPGVY  V+ ++
Sbjct: 170 DSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHV 229

Query: 251 TWIKNNTI 258
            WIK N +
Sbjct: 230 DWIKANAV 237

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

 Score = 62.0 bits (149), Expect = 4e-12
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 4/49 (8%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ 131
           IVGG    + ++P+              +CGA++ N  Y +TA HCV+ 
Sbjct: 1   IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYG 49

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score =  108 bits (269), Expect = 3e-29
 Identities = 56/224 (25%), Positives = 80/224 (35%), Gaps = 57/224 (25%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAH------------------- 127
           +VGG      ++P+M  L       CG  L     VLTAAH                   
Sbjct: 1   VVGGTRAAQGEFPFMVRL----SMGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVD 56

Query: 128 --------------------------------CVHQGLGIWVTIRGKSFSNKTGIVTGWG 155
                                                          +++  T  V GWG
Sbjct: 57  LQSSSAVKVRSTKVLQAPGYNGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGWG 116

Query: 156 VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNML-CAGYPKGEKDSCQGDSGGPL 214
             ++GGS    LL+  VP +S+A C+       +    +       G  D+CQGDSGGP+
Sbjct: 117 ANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEICAGYPDTGGVDTCQGDSGGPM 176

Query: 215 HYANETVH-HIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
              +       VG+VSWG GCA+  YPGVY  V+ + + I +  
Sbjct: 177 FRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAA 220

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  108 bits (269), Expect = 3e-29
 Identities = 50/224 (22%), Positives = 81/224 (36%), Gaps = 59/224 (26%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH--QGLGIWVTIRGKSF 144
           IVGG     +  P+   L      +CG +LIN+ +V++AAHC      + +         
Sbjct: 1   IVGGYTCQENSVPYQVSL-NSGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLE 59

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAE------------------------- 179
            N+  +     ++           ++ +  LS+                           
Sbjct: 60  GNEQFVNAAKIIKHPNFDRETYNNDIMLIKLSSPVKLNARVATVALPSSCAPAGTQCLIS 119

Query: 180 -CKKTAYENRITPNMLC--------------------------AGYPKGEKDSCQGDSGG 212
               T       P++L                            G+ +G KD+CQGDSGG
Sbjct: 120 GWGNTLSSGVNEPDLLQCLDAPLLPQADCEASSSFIITDNMVCVGFLEGGKDACQGDSGG 179

Query: 213 PLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           P+         + G+VSWG GCA  + PGVY +V  Y+ WI++ 
Sbjct: 180 PVVCNG----ELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDT 219

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

 Score =  101 bits (253), Expect = 6e-27
 Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 7/183 (3%)

Query: 76  CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGI 135
           C    V  +      +VT   +    +  + +   Y    + N++ ++  +        +
Sbjct: 41  CYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSYNIDNDIMLIKLSKPATLNTYV 100

Query: 136 WVTI--RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNM 193
                    + +     V+GWG      + S+ L  + +PILS ++C  + Y   IT  M
Sbjct: 101 QPVALPTSCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-YPGMITNAM 159

Query: 194 LCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI 253
            CAGY +G KDSCQGDSGGP+    E    + GVVSWG GCA+   PGVYA+V  +  W+
Sbjct: 160 FCAGYLEGGKDSCQGDSGGPVVCNGE----LQGVVSWGYGCAEPGNPGVYAKVCIFNDWL 215

Query: 254 KNN 256
            + 
Sbjct: 216 TST 218

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 2e-26
 Identities = 52/161 (32%), Positives = 71/161 (44%), Gaps = 9/161 (5%)

Query: 105 MYKKRFYCGATLINNLYVLTAAHCVHQGLGI----WVTIRGKSFSNKTGIVTGWGVQKQG 160
               R        N++ ++  +  +     I               K   VTGWG  +  
Sbjct: 81  YLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYY 140

Query: 161 GSTSDTLLEVEVPILSNAECKKTAYE-NRITPNMLCAGYPKGEKDSCQGDSGGPL----H 215
           G  +  L E  VPI+SN  C    +  N+I P M CAGYP+G  D+CQGDSGGP      
Sbjct: 141 GQQAGVLQEARVPIISNDVCNGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDS 200

Query: 216 YANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
            +      + G+VSWG GCA    PGVY +V+ +  WI   
Sbjct: 201 ISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQA 241

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 255

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 1e-15
 Identities = 19/44 (43%), Positives = 27/44 (61%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           IVGG+ T + ++PW   L Y     CG +L++  +VLTAAHC  
Sbjct: 1   IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFP 44

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  100 bits (249), Expect = 3e-26
 Identities = 53/111 (47%), Positives = 67/111 (60%)

Query: 146 NKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
            +   + GWG     GST+D L E +VP+LSN +C++   E  IT NM+CAGY  G  DS
Sbjct: 123 GRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQMPEYNITENMVCAGYEAGGVDS 182

Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           CQGDSGGPL         + GV S+G  CA  N PGVYARV R+  WI++ 
Sbjct: 183 CQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSF 233

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.9 bits (172), Expect = 3e-15
 Identities = 16/44 (36%), Positives = 29/44 (65%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           IVGG  +    +PW+  L +  +  CGA+L++  ++++AAHCV+
Sbjct: 1   IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVY 44

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  100 bits (248), Expect = 3e-26
 Identities = 47/139 (33%), Positives = 67/139 (48%), Gaps = 8/139 (5%)

Query: 120 LYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWG-VQKQGGSTSDTLLEVEVPILSNA 178
           L  L  +  +   +             +  I++GWG V     +  +TL   EV I S  
Sbjct: 91  LIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQN 150

Query: 179 ECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG-EGCAQE 237
           +C++  Y  +IT  M+CAG   G  D+CQGDSGGPL         + G+ SWG + C + 
Sbjct: 151 KCERA-YPGKITEGMVCAGSSNG-ADTCQGDSGGPLVCDG----MLQGITSWGSDPCGKP 204

Query: 238 NYPGVYARVNRYLTWIKNN 256
             PGVY ++ RY TWIK  
Sbjct: 205 EKPGVYTKICRYTTWIKKT 223

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 68.5 bits (166), Expect = 2e-14
 Identities = 19/45 (42%), Positives = 25/45 (55%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
           I+ G+    H  PW A L   +R  CG  L+ + +VLTAAHC  Q
Sbjct: 1   ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQ 45

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

 Score = 97.5 bits (241), Expect = 4e-25
 Identities = 52/162 (32%), Positives = 78/162 (48%), Gaps = 6/162 (3%)

Query: 96  HQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWG 155
             +    ++ + +           +  L         +           +    +++GWG
Sbjct: 67  AVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPASLPTAPPATGTKCLISGWG 126

Query: 156 -VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPL 214
                G    D L  ++ P+LS A+C+ + Y  +IT NM C G+ +G KDSCQGDSGGP+
Sbjct: 127 NTASSGADYPDELQCLDAPVLSQAKCEAS-YPGKITSNMFCVGFLEGGKDSCQGDSGGPV 185

Query: 215 HYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
                    + GVVSWG+GCAQ+N PGVY +V  Y+ WIKN 
Sbjct: 186 VCNG----QLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNT 223

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 96.7 bits (239), Expect = 9e-25
 Identities = 40/173 (23%), Positives = 66/173 (38%), Gaps = 6/173 (3%)

Query: 85  TRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSF 144
            R+V     +      + +L         +  +  L +   A        I +  +    
Sbjct: 65  HRLVSKSFPHPGFNMSLLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKP 124

Query: 145 SNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKD 204
            +K        +        D L  V + +L N  C K  Y  ++T  MLCAG   G KD
Sbjct: 125 GSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENCAK-VYLQKVTDVMLCAGEMGGGKD 183

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNN 256
           +C+ DSGGPL         + G  S+G   C +   P +Y  + ++ +WIK+ 
Sbjct: 184 TCRDDSGGPLICDG----ILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDT 232

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 1e-15
 Identities = 18/51 (35%), Positives = 27/51 (52%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           +VGG     +  PW   + Y+K   CG  L++  +VLTAAHC      +W+
Sbjct: 1   VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQYEVWL 51

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.9 bits (237), Expect = 2e-24
 Identities = 50/115 (43%), Positives = 67/115 (58%), Gaps = 2/115 (1%)

Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
            + K   VTGWG  + GG+ +  L + E+ +++   C+      +ITP M+C G+  G  
Sbjct: 126 PAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQTTCEN-LLPQQITPRMMCVGFLSGGV 184

Query: 204 DSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSCQGDSGGPL     +      GVVSWG+GCAQ N PGVY R+  +  WIK NT
Sbjct: 185 DSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT 239

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (159), Expect = 2e-13
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 87  IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           +VGG      ++PW   L    +   CGA+LI+  ++++AAHC     G   
Sbjct: 1   VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRY 52

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.0 bits (237), Expect = 2e-24
 Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 1/169 (0%)

Query: 89  GGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKT 148
           G       +     + + +         I  L + + A    + +   +       +++T
Sbjct: 75  GAHQEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRT 134

Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN-RITPNMLCAGYPKGEKDSCQ 207
                   + QG   +  L+E ++P++ N  C +  + N R+    LCAG+  G  DSCQ
Sbjct: 135 ECFITGWGETQGTFGAGLLMEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQ 194

Query: 208 GDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           GDSGGPL    +  + + GV SWG GCA+ N PGVY RV+R++TWI+  
Sbjct: 195 GDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGV 243

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 247

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 6e-14
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 73  CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ 131
           CG            +VGG V Y H +PW   L  +    +CG TLI+  +VLTAAHC+ +
Sbjct: 4   CGKPQVEPKKCPGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEK 63

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 45/114 (39%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
               +G V+GWG     G ++  L  + VP++  A C + + +  I  NM CAG+ +G +
Sbjct: 120 LKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLR-STKFTIYNNMFCAGFHEGGR 178

Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
           DSCQGDSGGP     E    + G++SWGE CA +   G+Y +V+RY+ WIK  T
Sbjct: 179 DSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKT 232

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.0 bits (175), Expect = 1e-15
 Identities = 20/60 (33%), Positives = 33/60 (55%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSN 146
           +VGG+     Q+PW  +L  K   +CG +++N  +++TAAHCV  G+ I V     +   
Sbjct: 1   VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEE 60

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 95.5 bits (236), Expect = 2e-24
 Identities = 46/105 (43%), Positives = 60/105 (57%), Gaps = 3/105 (2%)

Query: 152 TGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSG 211
                 + G ST   LL+V VPI+S A C+     + IT  M CAG   G KDSCQGDSG
Sbjct: 122 GWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAITNQMFCAGVSSGGKDSCQGDSG 181

Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           GP+  ++   + ++G VSWG GCA+ NY GVYA V    ++I   
Sbjct: 182 GPIVDSS---NTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY 223

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

 Score = 68.6 bits (166), Expect = 2e-14
 Identities = 17/45 (37%), Positives = 24/45 (53%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
           IVGG       +P++  +      +CG +L+N   VLTAAHCV  
Sbjct: 1   IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSG 45

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 223

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 94.0 bits (232), Expect = 6e-24
 Identities = 56/184 (30%), Positives = 82/184 (44%), Gaps = 8/184 (4%)

Query: 76  CTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ---G 132
           C    +  +       V   ++    A        Y   TL N++ ++            
Sbjct: 41  CYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSNTLNNDIMLIKLKSAASLNSRV 100

Query: 133 LGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN 192
             I +     S   +  I      +  G S  D L  ++ PILS++ CK  AY  +IT N
Sbjct: 101 ASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKS-AYPGQITSN 159

Query: 193 MLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTW 252
           M CA   +G+ DSCQGDSGGP+  +      + G+VSWG GC  +N PGVY +V  Y++W
Sbjct: 160 MFCAYGLEGKGDSCQGDSGGPVVCSG----KLQGIVSWGSGCQAKNKPGVYTKVCNYVSW 215

Query: 253 IKNN 256
           IK  
Sbjct: 216 IKQT 219

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 45/112 (40%), Positives = 55/112 (49%), Gaps = 10/112 (8%)

Query: 153 GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENR--------ITPNMLCAGYPKGEKD 204
           G     +       L +V+VPI+ N  C    +           +  +MLCAG     +D
Sbjct: 131 GDVDNDERLPPPFPLKQVKVPIMENHICDAKYHLGAYTGDDVRIVRDDMLCAGN--TRRD 188

Query: 205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           SCQGDSGGPL           GVVSWGEGCAQ N PG+Y RV  YL WI + 
Sbjct: 189 SCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIHHY 240

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.1 bits (157), Expect = 3e-13
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFY---CGATLINNLYVLTAAHCVHQGLGIWVTIRGKS 143
           IVGGQ     ++PW   L     ++   CG +LI+  +VLTAAHCV   +     +R + 
Sbjct: 1   IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQL 60

Query: 144 FSN 146
              
Sbjct: 61  REQ 63

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.2 bits (230), Expect = 1e-23
 Identities = 53/165 (32%), Positives = 76/165 (46%), Gaps = 7/165 (4%)

Query: 93  TYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVT 152
           +   Q   +  +++             L  L     + + +      R  S +  +  + 
Sbjct: 61  SSQEQSSVVRAVIHPDYDAASHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHIL 120

Query: 153 GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGG 212
           GWG +   G   DT+    + ++S  EC+  AY  +IT NMLCAG  K  KDSCQGDSGG
Sbjct: 121 GWG-KTADGDFPDTIQCAYIHLVSREECEH-AYPGQITQNMLCAGDEKYGKDSCQGDSGG 178

Query: 213 PLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNN 256
           PL   +    H+ G+VSWG   C  +  PGVY  V RY  WI+  
Sbjct: 179 PLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKT 219

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (171), Expect = 3e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           +V G       +P+ A L       CG  LI+ L+VLTAAHC    L +++
Sbjct: 1   LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPNLQVFL 51

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.5 bits (228), Expect = 4e-23
 Identities = 42/159 (26%), Positives = 70/159 (44%), Gaps = 8/159 (5%)

Query: 105 MYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV----TIRGKSFSNKTGIVTGWGVQKQG 160
           ++    +    + N++ ++  A  V  G  I V    +       +    VTGWG     
Sbjct: 91  IFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTN 150

Query: 161 GSTSDTLLEVEVPILSNAEC-KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANE 219
           G  +  L +   P++  A C ++  +   +   M+CAG   G   +C GDSGGPL+   +
Sbjct: 151 GPIAAELQQGLQPVVDYATCSQRDWWGTTVKETMVCAGGD-GVISACNGDSGGPLNCQAD 209

Query: 220 TVHHIVGVVSWGEG--CAQENYPGVYARVNRYLTWIKNN 256
               + G+VS+G G  C     P V+ RV+ Y+ WI   
Sbjct: 210 GQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQK 248

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Length = 251

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 54.8 bits (130), Expect = 1e-09
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 8/72 (11%)

Query: 78  CG----AVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCV 129
           CG      N   R+VGG+    H +PW   L Y +    R  CG TLI   +VLTAAHC+
Sbjct: 1   CGAPIFQPNLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCI 60

Query: 130 HQGLGIWVTIRG 141
              L   V +  
Sbjct: 61  SNTLTYRVALGK 72

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

 Score = 90.6 bits (223), Expect = 1e-22
 Identities = 39/224 (17%), Positives = 69/224 (30%), Gaps = 55/224 (24%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSN 146
           ++GG    ++++ ++        F+CG TLIN  +V+TAAHC      + + +  K   N
Sbjct: 1   VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTDFQMQLGVHSKKVLN 60

Query: 147 KTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKG----- 201
           +         +    + ++  +  +  +L   +   +     I P  L +  P       
Sbjct: 61  EDEQTRNPKEKFICPNKNNNEVLDKDIMLIKLDKPIS-NSKHIAPLSLPSSPPSVGSVCR 119

Query: 202 --------------------------EKDSCQGDSGGPLHYANETVHH------------ 223
                                     +   CQ      L                     
Sbjct: 120 IMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAEYRTLCAGIVQGGKDTCGGD 179

Query: 224 ----------IVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
                       G+VS+G   C Q   PG+Y  V  Y  WI+ N
Sbjct: 180 SGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRN 223

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.7 bits (221), Expect = 3e-22
 Identities = 43/111 (38%), Positives = 56/111 (50%), Gaps = 8/111 (7%)

Query: 150 IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENR---ITPNMLCAGYPKGEKDSC 206
           +             SDTL EV V +LS   C   +Y N    IT +M+CAG  KG+KDSC
Sbjct: 127 VTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQSYYNGDPFITKDMVCAGDAKGQKDSC 186

Query: 207 QGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARV-NRYLTWIKNN 256
           +GD+GGPL            +VS G  C     PG+Y  +  +Y TWIK+N
Sbjct: 187 KGDAGGPLICKG----VFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSN 233

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.8 bits (177), Expect = 6e-16
 Identities = 19/46 (41%), Positives = 27/46 (58%)

Query: 86  RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
            I+GG+    H  P+MA + Y     CG  LI+  +VLTAAHC ++
Sbjct: 2   EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYR 47

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 89.0 bits (219), Expect = 5e-22
 Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 6/164 (3%)

Query: 94  YVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTG 153
           +    P +     ++  +  +  +  L++   A        I +  +     +       
Sbjct: 72  HPDYIPLIVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGW 131

Query: 154 WGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGP 213
                     S  L  V + +LSN +C +  Y++ +T  MLCAG  +G KD+C GDSGGP
Sbjct: 132 GSTNPSEMVVSHDLQCVNIHLLSNEKCIE-TYKDNVTDVMLCAGEMEGGKDTCAGDSGGP 190

Query: 214 LHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNN 256
           L         + G+ S G   CA+   P +YA++ ++ +WIK  
Sbjct: 191 LICDG----VLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKV 230

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Length = 235

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 65.1 bits (157), Expect = 4e-13
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           IVGG     +  PW   ++    + CG  LI+  +V+TAAHC      + +
Sbjct: 1   IVGGYKCEKNSQPWQVAVIN--EYLCGGVLIDPSWVITAAHCYSNNYQVLL 49

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.6 bits (218), Expect = 7e-22
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 9/165 (5%)

Query: 96  HQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVT---IRGKSFSNKTGIVT 152
               +   L+ +          N+L +L  +        +             +      
Sbjct: 64  PHPDFNMSLLNEHTPQPEDDYSNDLMLLRLSKPADITDVVKPITLPTEEPKLGSTCLASG 123

Query: 153 GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGG 212
                       D L  V + +L N +C K A+E ++T  MLCAG   G   +C+ DSGG
Sbjct: 124 WGSTTPIKFKYPDDLQCVNLKLLPNEDCDK-AHEMKVTDAMLCAGEMDGGSYTCEHDSGG 182

Query: 213 PLHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
           PL         + G+ SWG E C +   P VY ++ ++ +WI+  
Sbjct: 183 PLICDG----ILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRET 223

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.5 bits (145), Expect = 1e-11
 Identities = 13/57 (22%), Positives = 23/57 (40%)

Query: 98  YPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGW 154
            PW   +    ++ CG  L++  +VLTAAHC +    +W+          +      
Sbjct: 3   QPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLV 59

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.5 bits (215), Expect = 2e-21
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 8/168 (4%)

Query: 96  HQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTI-------RGKSFSNKT 148
            +      ++ K   +   T   ++ VL     +   + +                + KT
Sbjct: 65  GEAVHEVEVVIKHNRFTKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKT 124

Query: 149 GIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQG 208
           GIV+G+G   + G  S  L  +EVP +    CK  +    IT NM CAGY   ++D+CQG
Sbjct: 125 GIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKL-SSSFIITQNMFCAGYDTKQEDACQG 183

Query: 209 DSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           DSGGP     +  + + G+VSWGEGCA++   G+Y +V  +L WI  +
Sbjct: 184 DSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRS 231

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Length = 233

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 2e-13
 Identities = 21/46 (45%), Positives = 32/46 (69%), Gaps = 1/46 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ 131
           IVGGQ     + PW ALL+ ++   +CG T+++  Y+LTAAHC++Q
Sbjct: 1   IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQ 46

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.0 bits (211), Expect = 8e-21
 Identities = 49/195 (25%), Positives = 82/195 (42%), Gaps = 7/195 (3%)

Query: 68  VDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATL-INNLYVLTAA 126
           +D  K      G  + +          + +                A L +     L+  
Sbjct: 44  MDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNYSKSTTDNDIALLHLAQPATLSQT 103

Query: 127 HCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTS-----DTLLEVEVPILSNAECK 181
                     +  R  + + +  +VTGWG        +       L  +++P++ + EC 
Sbjct: 104 IVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHNECS 163

Query: 182 KTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPG 241
           +    N ++ NMLCAG     +D+C+GDSGGP+  +      +VG+VSWGEGC   +  G
Sbjct: 164 EV-MSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYG 222

Query: 242 VYARVNRYLTWIKNN 256
           VY +V+RYL WI  +
Sbjct: 223 VYTKVSRYLDWIHGH 237

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.9 bits (159), Expect = 2e-13
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)

Query: 87  IVGGQVTYVHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVHQGLGIW 136
           ++ G++T     PW  +L+  KK+  CGA LI+  +VLTAAHC+ +   + 
Sbjct: 1   LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLL 51

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.7 bits (213), Expect = 1e-20
 Identities = 29/138 (21%), Positives = 46/138 (33%), Gaps = 27/138 (19%)

Query: 147 KTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAEC--------------KKTAYENRITP 191
           K  ++    ++          L   EV I +  +               K       +TP
Sbjct: 142 KEELLPAQDIKALFVSEEEKKLTRKEVYIKNGDKKGSCERDAQYAPGYDKVKDISEVVTP 201

Query: 192 NMLCAGYPKGE--KDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQEN----------Y 239
             LC G        ++C+GDSGGPL     +    VGV+SWG     +N           
Sbjct: 202 RFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVCKNQKRQKQVPAHA 261

Query: 240 PGVYARVNRYLTWIKNNT 257
              +  + + L W+K   
Sbjct: 262 RDFHINLFQVLPWLKEKL 279

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]} Length = 287

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (147), Expect = 1e-11
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 78  CGAVNKKTRIVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGL 133
           CG V +       + T  H+ PW A +   +       C   +++  +VLTAAHC     
Sbjct: 1   CGMVWEH-----RKGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDD 55

Query: 134 GIW 136
              
Sbjct: 56  KEH 58

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 84.1 bits (206), Expect = 5e-20
 Identities = 38/165 (23%), Positives = 63/165 (38%), Gaps = 4/165 (2%)

Query: 96  HQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKT-GIVTGW 154
                +    +          I  L + +      +     +   G    N     VTGW
Sbjct: 73  KVSKLVVHQDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGW 132

Query: 155 GVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPL 214
           G  +  G++ D L + ++ ++  A C K  +        +      G   SC GDSGGPL
Sbjct: 133 GRLQTNGASPDILQQGQLLVVDYATCSKPGWWGSTVKTNMICAGGDGIISSCNGDSGGPL 192

Query: 215 HYANET-VHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNN 256
           +         + G+VS+G   GC   + P V+ RV+ Y+ WI + 
Sbjct: 193 NCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSV 237

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 64.0 bits (154), Expect = 9e-13
 Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGLGIW 136
           +VGG+    + +PW   L Y      R  CG TL++  +VLTAAHC+       
Sbjct: 1   VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYR 54

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Length = 225

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.5 bits (202), Expect = 1e-19
 Identities = 35/216 (16%), Positives = 60/216 (27%), Gaps = 48/216 (22%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIR-----G 141
           IVGG+     Q+P++A +  + R +CG  LI+  +V+TAA C         T+       
Sbjct: 1   IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDL 60

Query: 142 KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKG 201
           +    ++          + G      L   + +  + E   T+    +   +  A    G
Sbjct: 61  RRRERQSRQTFSISSMSENGYDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAG 120

Query: 202 EKDSCQGDSGGPLHYANETVHHIV------------------------------------ 225
            +    G                V                                    
Sbjct: 121 TRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPNNVCTGVLTRRGGICNGDGGTPLV 180

Query: 226 ------GVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
                 GV S+  G      P  + RV  +  WI  
Sbjct: 181 CEGLAHGVASFSLGPC-GRGPDFFTRVALFRDWIDG 215

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.4 bits (202), Expect = 1e-19
 Identities = 43/117 (36%), Positives = 53/117 (45%), Gaps = 10/117 (8%)

Query: 146 NKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN---RITPNMLCAGYPKGE 202
                V GWG      S SDTL EVE+ I+    C    + N    I  NM+CAG  +G 
Sbjct: 117 GTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFNPVIGMNMVCAGSLRGG 176

Query: 203 KDSCQGDSGGPLHYANETVHHIVGVVSWG--EGCAQENYPGVYARV-NRYLTWIKNN 256
           +DSC GDSG PL           GV S+G    C     PGVY  +  ++L WI   
Sbjct: 177 RDSCNGDSGSPLLCEG----VFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMT 229

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 5e-15
 Identities = 18/54 (33%), Positives = 24/54 (44%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIR 140
           I+GG     H  P+M LL   ++  C   LI   +VLTAAHC        +   
Sbjct: 1   IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGA 54

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Length = 263

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

 Score = 82.0 bits (201), Expect = 3e-19
 Identities = 29/222 (13%), Positives = 45/222 (20%), Gaps = 62/222 (27%)

Query: 97  QYPWMALLMYKKRFYCGATLINNL------YVLTAAHCVHQGLGIWVTIRGKSFSNKTG- 149
               +          C  +L+NN       Y LTA HC         +I        +  
Sbjct: 21  IIRAVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTC 80

Query: 150 -------------------------------------------------IVTGWGVQKQG 160
                                                               GW  + Q 
Sbjct: 81  RAPNTPASGANGDGSMSQTQSGSTVKATYATSDFTLLELNNAANPAFNLFWAGWDRRDQN 140

Query: 161 GSTSDTLLEVEVPILSNAEC----KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHY 216
              +  +    V     +         A+        L   +      +  G SG P++ 
Sbjct: 141 YPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQPSGGVTEPGSSGSPIYS 200

Query: 217 ANETVHHIV-GVVSWGEGCAQENYPGVYARVNRYLTWIKNNT 257
             + V   + G  S        N    Y RV    T      
Sbjct: 201 PEKRVLGQLHGGPSSCSATGT-NRSDQYGRVFTSWTGGGAAA 241

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.5 bits (197), Expect = 9e-19
 Identities = 25/76 (32%), Positives = 37/76 (48%)

Query: 180 CKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENY 239
            +    +  +  + +CAG  K     C+GD GGPL      +  ++GV+  G GCA  N 
Sbjct: 149 SQHHRGKVTLNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNR 208

Query: 240 PGVYARVNRYLTWIKN 255
           PG++ RV  Y  WI  
Sbjct: 209 PGIFVRVAYYAKWIHK 224

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Length = 234

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (152), Expect = 1e-12
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           +V G  T      WM  L Y+ +  CG +LI   +VLTA  C  
Sbjct: 1   VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFP 43

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 80.6 bits (197), Expect = 9e-19
 Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 4/185 (2%)

Query: 73  CGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQG 132
                 G  N  T     Q+  V+     +              +  L    + +   Q 
Sbjct: 52  TWRVVLGEHNLNTNEGKEQIMTVNSVFIHSGWNSDDVAGGYDIALLRLNTQASLNSAVQL 111

Query: 133 LGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN 192
             +         +N    +TGWG    GG  SD+L +  +P + +A C  + +       
Sbjct: 112 AALP-PSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSSSGWWGSTVKT 170

Query: 193 MLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW--GEGCAQENYPGVYARVNRYL 250
            +           C GDSGGPL+      +++ GV S+    GC     P V+ RV+ Y+
Sbjct: 171 TMVCAGGG-ANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYI 229

Query: 251 TWIKN 255
           +W+  
Sbjct: 230 SWMNG 234

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]} Length = 236

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

 Score = 62.5 bits (150), Expect = 3e-12
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGLGIW 136
           +VGG+V   + +PW   L YK        CG +LI   +V+TAAHCV       
Sbjct: 1   VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWR 54

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 80.2 bits (196), Expect = 1e-18
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 2/113 (1%)

Query: 146 NKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
           N    +TGWG+ +  G  + TL +  +P +  A C  ++Y      N +      G +  
Sbjct: 124 NSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSSSSYWGSTVKNSMVCAGGDGVRSG 183

Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNN 256
           CQGDSGGPLH      + + GV S+    GC     P V+ RV+ Y++WI N 
Sbjct: 184 CQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNV 236

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 64.8 bits (156), Expect = 5e-13
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           +VGG     + +P    L Y+        CG TLI   +V+TAAHCV + L   V
Sbjct: 1   VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRV 55

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 79.7 bits (195), Expect = 1e-18
 Identities = 39/164 (23%), Positives = 60/164 (36%), Gaps = 9/164 (5%)

Query: 96  HQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWG 155
                    +++       +    +  L     +   +                  TGWG
Sbjct: 66  VTIQSTDFTVHENYNSFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWG 125

Query: 156 VQKQG-GSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPL 214
           +        SD L +V+VPI+SNA+C        I  +        G K +C GDSGGPL
Sbjct: 126 LPSDSALGISDVLRQVDVPIMSNADCDAV---YGIVTDGNICIDSTGGKGTCNGDSGGPL 182

Query: 215 HYANETVHHIVGVVSWGEGCA-QENYPGVYARVNRYLTWIKNNT 257
           +Y         G+ S+G     +  YP  + RV  +L WI+  T
Sbjct: 183 NYNG----LTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQT 222

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]} Length = 226

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

 Score = 70.1 bits (170), Expect = 5e-15
 Identities = 18/51 (35%), Positives = 28/51 (54%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           IVGG     + +P  A L     ++CG +LI+  ++LTAAHC+     + V
Sbjct: 1   IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDV 51

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 79.4 bits (194), Expect = 2e-18
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 6/113 (5%)

Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
                  V GWG     G  SDTL EVE+ +  + +C+          N +CAG PK ++
Sbjct: 118 KPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKNYFDKANEICAGDPKIKR 177

Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
            S +GDSGGPL           G+VS+G+     + P  + +V+ +L+WIK  
Sbjct: 178 ASFRGDSGGPLVCKK----VAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKT 224

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.9 bits (133), Expect = 4e-10
 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGLGIW 136
           I+GG     H  P+MA L           CG  LI   +VLTAAHC    + + 
Sbjct: 1   IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGSKIQVT 54

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.4 bits (194), Expect = 3e-18
 Identities = 55/196 (28%), Positives = 83/196 (42%), Gaps = 4/196 (2%)

Query: 65  VKPVDLEKCGPCTCGAVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLT 124
              +   +      G  +        Q   V Q    +  +     +  A L  +  V+ 
Sbjct: 43  FDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPSTYVPGTTNHDIALLRLHQPVVL 102

Query: 125 AAHCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAEC---- 180
             H V   L             +  +V+GWG     G+T+  L+ + VP L   +C    
Sbjct: 103 TDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQQS 162

Query: 181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYP 240
           +K      IT  M CAGY  G KDSC+GDSGGP         ++ G+VSWG+GCA   + 
Sbjct: 163 RKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHF 222

Query: 241 GVYARVNRYLTWIKNN 256
           GVY RV++Y+ W++  
Sbjct: 223 GVYTRVSQYIEWLQKL 238

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 3e-15
 Identities = 20/44 (45%), Positives = 27/44 (61%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVH 130
           IVGG+V    + PW  LL+      CG TLIN ++V++AAHC  
Sbjct: 1   IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFD 44

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.2 bits (191), Expect = 6e-18
 Identities = 39/163 (23%), Positives = 57/163 (34%), Gaps = 6/163 (3%)

Query: 94  YVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTG 153
            ++           +       L+       A          W  +           V G
Sbjct: 68  RLYDVLRAVPHPDSQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAG 127

Query: 154 WGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGP 213
           WG+    G   D+L  V +P+L  A C +  + +      L        +DSC+GDSGGP
Sbjct: 128 WGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHHDGAITERLMCAESNR-RDSCKGDSGGP 186

Query: 214 LHYANETVHHIVGVVSWG-EGCAQENYPGVYARVNRYLTWIKN 255
           L         + GVV+ G   C     PG+Y RV  Y  WI +
Sbjct: 187 LVCG----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDS 225

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.4 bits (168), Expect = 7e-15
 Identities = 17/51 (33%), Positives = 25/51 (49%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           I+GG+    H  P+MA +       CG  L+   +VL+AAHC+       V
Sbjct: 1   ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKV 51

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 78.0 bits (190), Expect = 9e-18
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 8/138 (5%)

Query: 127 HCVHQGLGIWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT--- 183
              +    +        ++  T +++GWG      +  D L +  +P+++ A+C      
Sbjct: 105 LGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTAAMVG 164

Query: 184 AYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSW----GEGCAQENY 239
                I  N +C   P G   +C GDSGGPL+  +     +VGV SW    G G    +Y
Sbjct: 165 VGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPDGG-TRVVGVTSWVVSSGLGACLPDY 223

Query: 240 PGVYARVNRYLTWIKNNT 257
           P VY RV+ YL WI +N+
Sbjct: 224 PSVYTRVSAYLGWIGDNS 241

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Length = 241

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

 Score = 63.3 bits (152), Expect = 1e-12
 Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKS 143
           ++GG      ++PW      +       CGA+L+++   L+A+HCV   L   + +    
Sbjct: 1   VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGL 60

Query: 144 F 144
           +
Sbjct: 61  W 61

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 75.9 bits (185), Expect = 3e-17
 Identities = 35/112 (31%), Positives = 46/112 (41%), Gaps = 8/112 (7%)

Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
                    GWG       TS TL EVE+ I+    C    Y        +C G P   +
Sbjct: 118 HPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYRY--YEYKFQVCVGSPTTLR 175

Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            +  GDSGGPL  A        G+VS+G   A    P ++ RV+ Y+ WI  
Sbjct: 176 AAFMGDSGGPLLCAG----VAHGIVSYGHPDA--KPPAIFTRVSTYVPWINA 221

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 57.8 bits (138), Expect = 9e-11
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           I+GG  +  H  P+MA L        R  CG  LI+  +VLTAAHC  + + + +
Sbjct: 1   IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREITVIL 55

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Length = 215

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

 Score = 74.8 bits (182), Expect = 8e-17
 Identities = 36/216 (16%), Positives = 59/216 (27%), Gaps = 51/216 (23%)

Query: 87  IVGG-----QVTYVHQYPWMALLMYKKRFY-CGATLINNLYVLTAAHCVHQGLGIWVTIR 140
           +V G     +V      P+ ++         C  TLI    +LT  HCV+       + +
Sbjct: 1   VVIGDDGRTKVANTRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAK 60

Query: 141 GKSFSNKTG------------IVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENR 188
           G  +                      G    G S  D  +      + N    ++  +  
Sbjct: 61  GSVYPGMNDSTAVNGSANMTEFYVPSGYINTGASQYDFAVIKTDTNIGNTVGYRSIRQVT 120

Query: 189 ITPNMLC--AGYPKGEKDS---------------------------CQGDSGGPLHYANE 219
                    +GYP  +  S                             G+SG  +   N 
Sbjct: 121 NLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTREDTNLAYYTIDTFSGNSGSAMLDQN- 179

Query: 220 TVHHIVGVVSWGEGCAQEN-YPGVYARVNRYLTWIK 254
               IVGV + G      N  P   A    ++ + K
Sbjct: 180 --QQIVGVHNAGYSNGTINGGPKATAAFVEFINYAK 213

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.4 bits (181), Expect = 1e-16
 Identities = 38/219 (17%), Positives = 64/219 (29%), Gaps = 49/219 (22%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKR---FYCGATLINNLYVLTAAHCVHQGLG--------- 134
           IVGG     H  P+MA L  +      +CG TLI+  +VLTAAHC+              
Sbjct: 1   IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGA 60

Query: 135 ------------------IWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILS 176
                                    ++  N   ++          S +   L  +   + 
Sbjct: 61  HNVRTQEPTQQHFSVAQVFLNNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVP 120

Query: 177 NAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVG---------- 226
           +          R+  +   A   +    +       P +          G          
Sbjct: 121 HGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPHNICTFVPRRKAGICFGDSGGPL 180

Query: 227 --------VVSWG-EGCAQENYPGVYARVNRYLTWIKNN 256
                   + S+   GCA   +P  + RV  Y+ WI++ 
Sbjct: 181 ICDGIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRST 219

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.6 bits (179), Expect = 3e-16
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 146 NKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA-YENRITPNMLCAGYPKGEKD 204
                ++GWG    GG   D L +  +P +    C +   +   +   M+CAG     + 
Sbjct: 116 EAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITVKKTMVCAGGDT--RS 173

Query: 205 SCQGDSGGPLHYAN-ETVHHIVGVVSW--GEGCAQENYPGVYARVNRYLTWIKNN 256
            C GDSGGPL+    +    + GV S+    GC     P V+ RV+ ++ WI   
Sbjct: 174 GCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDET 228

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Length = 232

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.1 bits (131), Expect = 8e-10
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 98  YPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGLGIWVTI 139
           + W   L Y+K       CG +LI   +V+TA HC+       V +
Sbjct: 2   WSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQVVL 47

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 72.8 bits (177), Expect = 6e-16
 Identities = 40/167 (23%), Positives = 61/167 (36%), Gaps = 9/167 (5%)

Query: 94  YVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTG 153
                 +   L+ KK       + ++L +L  A        + +                
Sbjct: 71  SFLDPQFDLSLLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYT 130

Query: 154 WG---VQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDS 210
            G   +       S TL  VE+ + SN +C + AY  ++T  +LCA +       C GDS
Sbjct: 131 SGWGLISTFTNRGSGTLQCVELRLQSNEKCAR-AYPEKMTEFVLCATHRDDSGSICLGDS 189

Query: 211 GGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNN 256
           GG L           G+ SWG   CA  N   V+ +V  +  WIK  
Sbjct: 190 GGALICDG----VFQGITSWGYSECADFNDNFVFTKVMPHKKWIKET 232

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]} Length = 237

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

 Score = 71.6 bits (174), Expect = 2e-15
 Identities = 19/51 (37%), Positives = 28/51 (54%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           I+GG     H  PW   + ++  F CG  L++  +VLTAAHC+     IW+
Sbjct: 1   IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQIWL 51

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Length = 187

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

 Score = 71.2 bits (173), Expect = 9e-16
 Identities = 24/167 (14%), Positives = 40/167 (23%), Gaps = 31/167 (18%)

Query: 113 GATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTG----------------WGV 156
             T     Y +TA HC +       +  G     + G                      V
Sbjct: 19  NVTKGGARYFVTAGHCTNISANWSASSGGSVVGVREGTSFPTNDYGIVRYTDGSSPAGTV 78

Query: 157 QKQGGSTS-----------DTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
               GST              + +        +             +       +    S
Sbjct: 79  DLYNGSTQDISSAANAVVGQAIKKSGSTTKVTSGTVTAVNVTVNYGDGPVYNMVRTTACS 138

Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTW 252
             GDSGG     +      +G+ S   GC+      ++  V   L+ 
Sbjct: 139 AGGDSGGAHFAGSV----ALGIHSGSSGCSGTAGSAIHQPVTEALSA 181

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 71.7 bits (174), Expect = 1e-15
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 93  TYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVT 152
           +        A++      +     +  +++            I ++   +   +    +T
Sbjct: 64  SGDVYDVEDAVVNKNYDDFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLT 123

Query: 153 GWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGG 212
           GWG  + GG+T + L E+E+ +    +C++  +  R+  + +C    K  + +C GDSGG
Sbjct: 124 GWGSTRLGGNTPNALQEIELIVHPQKQCERDQW--RVIDSHIC-TLTKRGEGACHGDSGG 180

Query: 213 PLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
           PL          +G+VS+G  CA    P VY RV+ +++WI  N
Sbjct: 181 PLVANG----AQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINAN 219

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Length = 222

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

 Score = 68.2 bits (165), Expect = 2e-14
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           IVGG+   V +YP+   L       CGA++++N  VLTAAHCV     +  
Sbjct: 1   IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNR 51

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.5 bits (171), Expect = 3e-15
 Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 6/121 (4%)

Query: 136 WVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLC 195
             + + +    +T  V GWG     G  S TL EV++ +  + +C+        +   LC
Sbjct: 109 LPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHYYDSTIELC 168

Query: 196 AGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            G P+ +K S +GDSGGPL           G+VS+G        P    +V+ ++ WIK 
Sbjct: 169 VGDPEIKKTSFKGDSGGPLVCNK----VAQGIVSYGRNNGM--PPRACTKVSSFVHWIKK 222

Query: 256 N 256
            
Sbjct: 223 T 223

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Length = 227

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 1e-11
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKR---FYCGATLINNLYVLTAAHCVHQ 131
           I+GG     H  P+MA LM   +     CG  LI + +VLTAAHC   
Sbjct: 1   IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWGS 48

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 5e-15
 Identities = 35/121 (28%), Positives = 52/121 (42%), Gaps = 8/121 (6%)

Query: 136 WVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLC 195
           + +        +   V GWG        SDTL EV++ ++    C    + +      LC
Sbjct: 108 FPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSH--FRDFDHNLQLC 165

Query: 196 AGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN 255
            G P+  K + +GDSGGPL  A        G+VS+G   A    P V+ R++ Y  WI  
Sbjct: 166 VGNPRKTKSAFKGDSGGPLLCAG----VAQGIVSYGRSDA--KPPAVFTRISHYRPWINQ 219

Query: 256 N 256
            
Sbjct: 220 I 220

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-10
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 4/53 (7%)

Query: 89  GGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           GG     H  P+MA L          +CG  LI   +VLTAAHC  + + + +
Sbjct: 1   GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTL 53

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.2 bits (170), Expect = 5e-15
 Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 8/93 (8%)

Query: 170 VEVPILSNAECKK----TAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVH--H 223
           V +P+ +   C+         +  + NM CAG+P  ++D+CQGDSGG     +       
Sbjct: 147 VRLPVANPQACENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWV 206

Query: 224 IVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
             G+VSWG GC+     G Y +V  Y+ WIK  
Sbjct: 207 ATGIVSWGIGCS--RGYGFYTKVLNYVDWIKKE 237

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 240

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.6 bits (158), Expect = 2e-13
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 2/52 (3%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVT 138
           I+GGQ   +  +PW            G  L+ + ++LTAAH ++       +
Sbjct: 1   IIGGQKAKMGNFPWQVFTNI--HGRGGGALLGDRWILTAAHTLYPKEHEAQS 50

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 68.7 bits (166), Expect = 1e-14
 Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 6/173 (3%)

Query: 88  VGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNK 147
           +G  V Y  +    +  +     +   T +N++ ++   H  +      + +      N 
Sbjct: 57  LGSAVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNN 116

Query: 148 TGIVTGWGVQ--KQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEKDS 205
                   V    Q  + +  L      ++ N  C +      I  + +C     G K  
Sbjct: 117 KFENIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGIIVESTICGDTSDG-KSP 175

Query: 206 CQGDSGGPLHYANETVHHIVGVVSWGEGCA-QENYPGVYARVNRYLTWIKNNT 257
           C GDSGGP   +++ +  ++GVVS+  G   +   P  ++RV  Y+ WI+ NT
Sbjct: 176 CFGDSGGPFVLSDKNL--LIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNT 226

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]} Length = 230

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

 Score = 57.9 bits (138), Expect = 9e-11
 Identities = 36/161 (22%), Positives = 59/161 (36%), Gaps = 5/161 (3%)

Query: 87  IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGK 142
           I+ G   Y   +P+ A L       +R +CG +LI+N ++LTAAHCVH  +   V   G 
Sbjct: 1   IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAV-SVVVYLGS 59

Query: 143 SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGE 202
           +   +   V            +      +V ++     + T     I          K E
Sbjct: 60  AVQYEGEAVVNSERIISHSMFNPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFE 119

Query: 203 KDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVY 243
                    G  +     + +   +V   + CAQE  PG+ 
Sbjct: 120 NIWATVSGWGQSNTDTVILQYTYNLVIDNDRCAQEYPPGII 160

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (166), Expect = 2e-14
 Identities = 34/82 (41%), Positives = 44/82 (53%), Gaps = 3/82 (3%)

Query: 177 NAECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVH--HIVGVVSWGE-G 233
            A  K       +T NMLCAG   G KDSC+GDSGG L + +       + G+VSWG   
Sbjct: 156 AAYEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMN 215

Query: 234 CAQENYPGVYARVNRYLTWIKN 255
           C +    GVY +V  Y+ WI+N
Sbjct: 216 CGEAGQYGVYTKVINYIPWIEN 237

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 3e-13
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQG 132
           I GGQ      +PW  L++          L+ + +VLTAAH V++ 
Sbjct: 1   IYGGQKAKPGDFPWQVLILG--GTTAAGALLYDNWVLTAAHAVYEQ 44

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 5e-14
 Identities = 20/45 (44%), Positives = 28/45 (62%)

Query: 87  IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ 131
           IVGG+    H +P+M  L  +   +CGATLI   +V++AAHCV  
Sbjct: 1   IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVAN 45

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Length = 218

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (137), Expect = 1e-10
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 183 TAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPG 241
           T   +    + +C      +   C GDSG PL         I G+ S+   GCA   YP 
Sbjct: 146 TVVTSLCRRSNVCTLVRGRQAGVCFGDSGSPLVCNG----LIHGIASFVRGGCASGLYPD 201

Query: 242 VYARVNRYLTWIKNN 256
            +A V +++ WI + 
Sbjct: 202 AFAPVAQFVNWIDSI 216

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.3 bits (160), Expect = 9e-14
 Identities = 36/122 (29%), Positives = 54/122 (44%), Gaps = 7/122 (5%)

Query: 135 IWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNML 194
                  +        V GWG       ++D L EV++ + S  +C    ++N I    +
Sbjct: 108 NLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIA-RFKNYIPFTQI 166

Query: 195 CAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK 254
           CAG P   K+S  GDSGGPL           G+VS+G        P VY R++ +L+WI 
Sbjct: 167 CAGDPSKRKNSFSGDSGGPLVCNG----VAQGIVSYGRNDG--TTPDVYTRISSFLSWIH 220

Query: 255 NN 256
           + 
Sbjct: 221 ST 222

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.0 bits (141), Expect = 4e-11
 Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 3/68 (4%)

Query: 87  IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKS 143
           I+GG     H  P+MA L++K   K   CG  L+   +VLTAAHC+   + + +      
Sbjct: 1   IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSINVTLGAHNIM 60

Query: 144 FSNKTGIV 151
              +T  V
Sbjct: 61  ERERTQQV 68

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.4 bits (160), Expect = 2e-13
 Identities = 32/76 (42%), Positives = 39/76 (51%), Gaps = 7/76 (9%)

Query: 184 AYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANE---TVHHIVGVVSWGEGCAQENYP 240
           A     TPNM+CAG  KG  DSC+GDSGG     +    T  +  G+VSWG  C      
Sbjct: 183 AEAYVFTPNMICAGGEKG-MDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---Y 238

Query: 241 GVYARVNRYLTWIKNN 256
           G+Y RV  Y+ WI   
Sbjct: 239 GLYTRVKNYVDWIMKT 254

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 259

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 2e-11
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 78  CG----AVNKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGL 133
           CG       +K RI+GG    +  +PW          + G  LIN  +VLTAAH V    
Sbjct: 1   CGVPREPFEEKQRIIGGSDADIKNFPWQVFF---DNPWAGGALINEYWVLTAAHVVEGNR 57

Query: 134 GIWVTIR 140
              + + 
Sbjct: 58  EPTMYVG 64

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (152), Expect = 1e-12
 Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 8/113 (7%)

Query: 144 FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAGYPKGEK 203
                  V GWG       T DTL EV++ +  + +C +  + +      +C G  +  K
Sbjct: 117 RPGTLCTVAGWGRVSMRRGT-DTLREVQLRVQRDRQCLR-IFGSYDPRRQICVGDRRERK 174

Query: 204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN 256
            + +GDSGGPL   N       G+VS+G+       P V+ RV+ +L WI+  
Sbjct: 175 AAFKGDSGGPLLCNN----VAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTT 221

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Length = 224

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 9e-11
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 3/54 (5%)

Query: 87  IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVHQGLGIWV 137
           I+GG+ +  H  P+MA L  +    +  CG  L+   +VLTAAHC    + + +
Sbjct: 1   IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTL 54

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Length = 216

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

 Score = 60.0 bits (144), Expect = 2e-11
 Identities = 23/209 (11%), Positives = 49/209 (23%), Gaps = 46/209 (22%)

Query: 91  QVTYVHQYPWMALLMY-----KKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFS 145
           Q+T      +  +           F     ++    +LT  H V    G    ++    +
Sbjct: 10  QITDTTNGHYAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSA 69

Query: 146 NKTGIVTGWGVQKQG-----GSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCAG--- 197
                    G   +      G     +++      +    +                   
Sbjct: 70  INQDNYPNGGFTAEQITKYSGEGDLAIVKFSPNEQNKHIGEVVKPATMSNNAETQTNQNI 129

Query: 198 ----YPKGEK-----------------------DSCQGDSGGPLHYANETVHHIVGVVSW 230
               YP  +                         +  G+SG P+       + ++G+   
Sbjct: 130 TVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEK---NEVIGIHWG 186

Query: 231 GEGCAQENYPGVYARVNRYLTWIKNNTID 259
             G   E    V+        ++K N  D
Sbjct: 187 --GVPNEFNGAVFI-NENVRNFLKQNIED 212

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]} Length = 181

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

 Score = 37.8 bits (87), Expect = 5e-04
 Identities = 26/159 (16%), Positives = 46/159 (28%), Gaps = 25/159 (15%)

Query: 113 GATLINNLYVLTAAHCVHQGLGIWVT--------------IRGKSFSNKTGIVTGWGVQK 158
             ++    + LTA HC +      +               IR  + +   G V  +    
Sbjct: 19  NVSVNGVAHALTAGHCTNISASWSIGTRTGTSFPNNDYGIIRHSNPAAADGRVYLYNGSY 78

Query: 159 QGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLCA-------GYPKGEKDSCQGDSG 211
           Q  +T+      +    S +     +         +         G  +    +  GDSG
Sbjct: 79  QDITTAGNAFVGQAVQRSGSTTGLRSGSVTGLNATVNYGSSGIVYGMIQTNVCAQPGDSG 138

Query: 212 GPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYL 250
           G L   +      +G+ S G G  +      Y  V   L
Sbjct: 139 GSLFAGST----ALGLTSGGSGNCRTGGTTFYQPVTEAL 173

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Length = 242

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

 Score = 37.7 bits (86), Expect = 8e-04
 Identities = 12/73 (16%), Positives = 19/73 (26%), Gaps = 2/73 (2%)

Query: 84  KTRIVGGQVTYVHQYPWMAL--LMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRG 141
           K            +YP+  +  +  K +      LI    VLT  H      G    +  
Sbjct: 27  KELFSKVDEKDRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKFANGDPSKVSF 86

Query: 142 KSFSNKTGIVTGW 154
           +   N        
Sbjct: 87  RPSINTDDNGNTE 99

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Length = 246

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

 Score = 36.8 bits (84), Expect = 0.001
 Identities = 26/200 (13%), Positives = 48/200 (24%), Gaps = 41/200 (20%)

Query: 98  YPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQGLGIWVTIRGKSFSNKTGIVTGWG-- 155
           Y  +  +  K        LI    ++T  H   +       I      N+      +   
Sbjct: 36  YNSVGTVFVKGSTLATGVLIGKNTIVTNYHVAREAAKNPSNIIFTPAQNRDAEKNEFPTP 95

Query: 156 -----VQKQGGSTSDTLLEVEVPILSNAECKKTAYEN------------RITPNMLCAGY 198
                 ++   S     L++ +  L   E  ++A +                      GY
Sbjct: 96  YGKFEAEEIKESPYGQGLDLAIIKLKPNEKGESAGDLIQPANIPDHIDIAKGDKYSLLGY 155

Query: 199 PKGEKDSCQ-------------------GDSGGPLHYANETVHHIVGVVSWGEGCAQENY 239
           P                           G+SG  +         ++G+ S   G      
Sbjct: 156 PYNYSAYSLYQSQIEMFNDSQYFGYTEVGNSGSGIFNLK---GELIGIHSGKGGQHNLPI 212

Query: 240 PGVYARVNRYLTWIKNNTID 259
              + R    L  + N   D
Sbjct: 213 GVFFNRKISSLYSVDNTFGD 232

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	260
d1xx9a_	237	Coagulation factor XI {Human (Homo sapiens) [TaxId	100.0
g1gg6.1	238	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1ekbb_	235	Enteropeptidase (enterokinase light chain) {Cow (B	100.0
d2f91a1	237	Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus	100.0
d1npma_	225	Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1orfa_	232	Granzyme A {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1hj8a_	222	Trypsin(ogen) {North atlantic salmon (Salmo salar)	100.0
d1gdna_	224	Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5	100.0
d1mzaa_	240	Granzyme K {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1rjxb_	247	Plasmin(ogen), catalytic domain {Human (Homo sapie	100.0
d1rfna_	235	Coagulation factor IXa, protease domain {Human (Ho	100.0
d1z8ga1	255	Hepsin, catalytic domain {Human (Homo sapiens) [Ta	100.0
d2p3ub1	233	Coagulation factor Xa, protease domain {Human (Hom	100.0
d1pytd_	251	(alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus)	100.0
d1eaxa_	241	Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960	100.0
g2pka.1	232	Kallikrein A {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1lo6a_	221	Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1j16a_	223	Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101	100.0
d1fxya_	228	Coagulation factor Xa-trypsin chimera {Synthetic,	100.0
d1tona_	235	Tonin {Rat (Rattus rattus) [TaxId: 10117]}	100.0
d1eq9a_	222	(alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So	100.0
d1hj9a_	223	Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}	100.0
d1brup_	241	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
g1gj7.1	256	Urokinase-type plasminogen activator (LMW U-PA), c	100.0
d1ao5a_	237	Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]	100.0
d1fi8a_	227	Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]	100.0
d2bz6h1	254	Coagulation factor VIIa {Human (Homo sapiens) [Tax	100.0
d1si5h_	234	Hepatocyte growth factor, HGF {Human (Homo sapiens	100.0
d1autc_	240	Activated protein c (autoprothrombin IIa) {Human (	100.0
d1gvkb_	240	Elastase {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d1bioa_	228	Factor D {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1os8a_	223	Trypsin {Streptomyces griseus, strain k1 [TaxId: 1	100.0
d1q3xa1	242	Mannan-binding lectin serine protease 2 (MASP-2),	100.0
d1a7sa_	225	Heparin binding protein, HBP {Human (Homo sapiens)	100.0
d1t32a1	224	Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}	100.0
g1fiw.1	274	Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]}	100.0
d2fpza1	243	beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1op0a_	234	Venom serine protease {Hundred-pace snake (Agkistr	100.0
d1azza_	226	Crab collagenase {Atlantic sand fiddler crab (Uca	100.0
d1eufa_	224	Duodenase {Cow (Bos taurus) [TaxId: 9913]}	100.0
d2z7fe1	218	Elastase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1gvza_	237	Prostate specific antigen (PSA kallikrein) {Horse	100.0
d3rp2a_	224	Chymase II (mast cell proteinase II) {Rat (Rattus	100.0
d1nn6a_	224	Chymase (mast cell protease I) {Human (Homo sapien	100.0
g1h8d.1	289	Thrombin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2hlca_	230	HL collagenase {Common cattle grub (Hypoderma line	100.0
d1elta_	236	Elastase {Salmon (Salmo salar) [TaxId: 8030]}	100.0
d1fq3a_	227	Granzyme B {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2qy0b1	240	Complement C1R protease, catalytic domain {Human (	100.0
d1elva1	259	Complement C1S protease, catalytic domain {Human (	100.0
g1rtf.1	260	Two-chain tissue plasminogen activator (TC)-T-PA {	100.0
d1m9ua_	241	Elastase {Worm (Eisenia fetida) [TaxId: 6396]}	100.0
d1fuja_	221	Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96	100.0
d1fona_	232	Procarboxypeptidase A-S6 subunit III (zymogen E) {	100.0
d1sgfa_	228	7S NGF protease subunits {Mouse (Mus musculus) [Ta	100.0
d1rrka1	287	Factor B {Human (Homo sapiens) [TaxId: 9606]}	99.98
d1arba_	263	Achromobacter protease {Achromobacter lyticus, str	99.88
d1p3ca_	215	Glutamyl endopeptidase {Bacillus intermedius [TaxI	99.83
d2o8la1	216	V8 protease {Staphylococcus aureus [TaxId: 1280]}	99.52
d1hpga_	187	Glutamic acid-specific protease {Streptomyces gris	99.51
d1agja_	242	Epidermolytic (exfoliative) toxin A {Staphylococcu	99.37
d1qtfa_	246	Exfoliative toxin B {Staphylococcus aureus [TaxId:	98.92
d2sgaa_	181	Protease A {Streptomyces griseus, strain k1 [TaxId	98.58
d2qaaa1	185	Protease B {Streptomyces griseus, strain k1 [TaxId	98.13
d2h5ca1	198	alpha-Lytic protease {Lysobacter enzymogenes, 495	98.02
d1l1ja_	228	Protease Do (DegP, HtrA), catalytic domain {Thermo	97.71
d2z9ia2	221	Protease PepD {Mycobacterium tuberculosis [TaxId:	97.67
d1lcya2	205	Mitochondrial serine protease HtrA2, catalytic dom	97.59
d2qf3a1	210	Stress sensor protease DegS, catalytic domain {Esc	97.28
d1ky9a2	249	Protease Do (DegP, HtrA), catalytic domain {Escher	96.56
d1lvmb_	219	TEV protease (nucleat inclusion protein A, NIA) {T	96.45
d2bhga1	199	3C cysteine protease (picornain 3C) {Foot-and-mout	96.27

>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-39  Score=271.58  Aligned_cols=172  Identities=42%  Similarity=0.841  Sum_probs=145.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecC---eeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~---~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||+++..++|||+|.|+..+   .++|+||||+++||||||||+..                                
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~   80 (237)
T d1xx9a_           1 IVGGTASVRGEWPWQVTLHTTSPTQRHLCGGSIIGNQWILTAAHCFYGVESPKILRVYSGILNQSEIKEDTSFFGVQEII   80 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEEESSSEEEEEEEEEEETTEEEECGGGGTTCSCGGGEEEEESCSBGGGCCTTCCCEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEECCCCccEEEEEEEEeCCEEEeCeEeeecccCccceeeecccccccccccceEEEEeeEEE
Confidence            7899999999999999998643   57899999999999999999854                                


Q ss_pred             ----------CCCceeec-------------------cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWVTI-------------------RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l~~-------------------~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                ++|+.|..                   .........+.+.||+...........+++..+.+++.++|+.
T Consensus        81 ~h~~~~~~~~~~diAll~L~~~v~~~~~~~pi~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  160 (237)
T d1xx9a_          81 IHDQYKMAESGYDIALLKLETTVNYTDSQRPICLPSKGDRNVIYTDCWVTGWGYRKLRDKIQNTLQKAKIPLVTNEECQK  160 (237)
T ss_dssp             ECTTCSCTTTSCCCEEEEESSCCCCBTTBCCCBCCCTTCTTCCCSCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHHH
T ss_pred             EecccccccccceeEEEEeccccccccccceEEecccccccccccccEEEEeecccccccCCCccEEEEEEEeCHHHHhh
Confidence                      12222210                   0111234578899999877666677889999999999999998


Q ss_pred             hhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         183 TAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       183 ~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .+....+.+.++|++......+.|.||+|+||++.++++|+|+||+|++..|+..+.|++||||++|++||+++|+
T Consensus       161 ~~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~~~  236 (237)
T d1xx9a_         161 RYRGHKITHKMICAGYREGGKDACKGDSGGPLSCKHNEVWHLVGITSWGEGCAQRERPGVYTNVVEYVDWILEKTQ  236 (237)
T ss_dssp             HTTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEEESSSSCTTCCEEEECGGGGHHHHHHHHC
T ss_pred             hhcCCCCCCceEEEecCCCCcccccCCccceeEEecCCEEEEEEEEEeCCCCCCCCCCEEEEEhHHhHhHHHHHHC
Confidence            7777788899999987777788999999999999999999999999999999888899999999999999999986

>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Enteropeptidase (enterokinase light chain)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-39  Score=269.63  Aligned_cols=172  Identities=41%  Similarity=0.746  Sum_probs=148.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|..++|||+|+|+..+.++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   80 (235)
T d1ekbb_           1 IVGGSDSREGAWPWVVALYFDDQQVCGASLVSRDWLVSAAHCVYGRNMEPSKWKAVLGLHMASNLTSPQIETRLIDQIVI   80 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCCSSGGGEEEEESCCBTTCCCCTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEcCCEEEEChhhccCCCCCccceeeeecccccccccCcceeEeeeeeeee
Confidence            689999999999999999999999999999999999999999854                                   


Q ss_pred             ---------CCC------------------ceeeccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhh
Q psy8662         132 ---------GLG------------------IWVTIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT  183 (260)
Q Consensus       132 ---------~~~------------------i~l~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~  183 (260)
                               ..+                  ++||.... ...+..+.++||+.....+.....|+...+.+++.+.|...
T Consensus        81 hp~~~~~~~~~diAli~L~~~v~~~~~~~picLp~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  160 (235)
T d1ekbb_          81 NPHYNKRRKNNDIAMMHLEMKVNYTDYIQPICLPEENQVFPPGRICSIAGWGALIYQGSTADVLQEADVPLLSNEKCQQQ  160 (235)
T ss_dssp             CTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEBCCHHHHHHH
T ss_pred             cccccccCccchhhhhhhcCceecCCceeeEECCCccccCCcceEEEEecccccccCCcccccceeeEEEEecHHHhccc
Confidence                     011                  22232222 22567899999998877666677899999999999999887


Q ss_pred             hcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         184 AYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       184 ~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .......+.++|+.......+.|.||+||||++..+++|+|+||+|++..|+..+.|++||||..|++||+++|+
T Consensus       161 ~~~~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~  235 (235)
T d1ekbb_         161 MPEYNITENMVCAGYEAGGVDSCQGDSGGPLMCQENNRWLLAGVTSFGYQCALPNRPGVYARVPRFTEWIQSFLH  235 (235)
T ss_dssp             CTTSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGTHHHHHTTCC
T ss_pred             ccccccCcccEEEEcCCCCcccccCCCCCccEEccCCEEEEEEEEEecCCCCCCCCCEEEEEHHHHHHHHHHhhC
Confidence            666678889999987777778999999999999999999999999999999888899999999999999999874

>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]

Probab=100.00  E-value=9.6e-39  Score=269.35  Aligned_cols=171  Identities=40%  Similarity=0.786  Sum_probs=145.7

Q ss_pred             eeCCeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||+++..++|||+|+|...    +.++|+||||+++||||||||+..                               
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   80 (237)
T d2f91a1           1 IVGGTDATLGEFPYQLSFQETFIGFSFHFCGASIYNENYAITAGHCVYGDDYENPSGLQIVAGELDMSVNEGSEQIITVS   80 (237)
T ss_dssp             CBSCEECCTTTSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGTTTSCTTSCCSEEEEESCSBTTSCCSCCEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCCcEEEEEEEEeCCEEEECcccccccCCccccceeEEeeecccccccCcceeeeEE
Confidence            689999999999999999763    356899999999999999999954                               


Q ss_pred             -------------CCCceeec-----------------cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHh
Q psy8662         132 -------------GLGIWVTI-----------------RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECK  181 (260)
Q Consensus       132 -------------~~~i~l~~-----------------~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~  181 (260)
                                   +++|.|..                 ......+..+.+.|||.+..++..+..|+++.+.+++.+.|+
T Consensus        81 ~i~~h~~y~~~~~~~diAll~l~~~v~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~C~  160 (237)
T d2f91a1          81 KIILHENFDYNLLDNDISLLKLSGSLTFNDNVAPIALPEQGHTATGDVIVTGWGTTSEGGNTPDVLQKVTVPLVSDEDCR  160 (237)
T ss_dssp             EEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCSEEEEEESCCSSTTCCCCSBCEEEEEEEECHHHHH
T ss_pred             EEEEccccCCCccccceeeeccccccccCCceeeeeccccCcccccceeeccccccCCCCcCCchheEEEEEEeCHHHHh
Confidence                         11222210                 111234678999999998877777788999999999999999


Q ss_pred             hhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         182 KTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       182 ~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      ..+....+.+.++|........+.|.+|+||||++.++++|+|+||+|++..|+..+.|.+||+|+.|++||++++
T Consensus       161 ~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~Pl~~~~~~~~~L~Gi~S~g~~c~~~~~p~v~t~v~~y~~WI~~n~  236 (237)
T d2f91a1         161 ADYGADEILDSMICAGVPEGGKDSCQGDSGGPLAASDTGSTYLAGIVSWGYGCARPGYPGVYTEVSYHVDWIKANA  236 (237)
T ss_dssp             HHHCTTTSCTTEEEECCTTCCCBCCTTCTTCEEEECTTSSCEEEEEEEEESSSSCTTCCEEEEEGGGSHHHHHHHC
T ss_pred             hhccCCcccCceeEeecCCCccccccCCCCCeEEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            8766667888999998777778899999999999999999999999999999998888999999999999999886

>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Neuropsin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-38  Score=266.88  Aligned_cols=166  Identities=38%  Similarity=0.734  Sum_probs=137.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|.+++|||||+|+..++++|+||||+++||||||||+..                                   
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (225)
T d1npma_           1 ILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLTAAHCKKQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNS   80 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCEEEESCSBTTC--CCCEEECEEEEEECTTCCSS
T ss_pred             CCCCEECCCCCCCCEEEEEECCcEEEEEEEEcCCEEEEchHhCccccccccccccccccCCCcceeeeeeeEEEEeeecc
Confidence            789999999999999999999999999999999999999999864                                   


Q ss_pred             -----CCCceeec-----------------cCcccCCceEEEEeeeecCCC-CCCCccceEEEEEeeChhhHhhhhcCCC
Q psy8662         132 -----GLGIWVTI-----------------RGKSFSNKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAECKKTAYENR  188 (260)
Q Consensus       132 -----~~~i~l~~-----------------~~~~~~~~~~~v~Gwg~~~~~-~~~~~~l~~~~v~vi~~~~C~~~~~~~~  188 (260)
                           .++|.|..                 .........+.++|||..... ...+..|+++.+.+++.++|++. +...
T Consensus        81 ~~~~~~~dIAll~L~~~~~~~~~~~~i~l~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~~  159 (225)
T d1npma_          81 NPEDHSHDIMLIRLQNSANLGDKVKPVQLANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERA-YPGK  159 (225)
T ss_dssp             CTTCCTTCCEEEEESSCCCCSSSSCCCEECSSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEECCHHHHHHH-STTT
T ss_pred             CcccchhhhhhhhccccccccccccccccccccccCCceEEEeccceecCCCCCCCCccEEEEEEEecHHHHhhh-ccCC
Confidence                 12233311                 111234678999999976543 34467899999999999999886 5667


Q ss_pred             CCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC-CCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         189 ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG-CAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       189 i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~-C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      +.++++|+.... ..+.|.||+||||+++    |+|+||+|+|.. |+..+.|++||||++|++||+++|+
T Consensus       160 ~~~~~~C~~~~~-~~~~c~gd~G~pl~~~----~~l~Gi~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~  225 (225)
T d1npma_         160 ITEGMVCAGSSN-GADTCQGDSGGPLVCD----GMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMD  225 (225)
T ss_dssp             CCTTEEEEECTT-CCBCCTTCTTCEEEET----TEEEEEEEECCSSSCBTTBCEEEEEHHHHHHHHHHHHC
T ss_pred             cCCCEEEecCCC-CCccccCCCCceEEEc----cEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            889999998654 4789999999999984    599999999864 7777889999999999999999984

>d1orfa_ b.47.1.2 (A:) Granzyme A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-38  Score=268.09  Aligned_cols=169  Identities=36%  Similarity=0.616  Sum_probs=140.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|+.++|||||+|++.+.++|+||||+++||||||||+..                                   
T Consensus         1 ivgG~~a~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~hp~y~~   80 (232)
T d1orfa_           1 IIGGNEVTPHSRPYMVLLSLDRKTICAGALIAKDWVLTAAHCNLNKRSQVILGAHSITREEPTKQIMLVKKEFPYPCYDP   80 (232)
T ss_dssp             CBSCEECCTTSSTTEEEEECSSSCEEEEEEEETTEEEECTTCCCCTTCEEEESCSBSSSCCTTCEEECEEEEEECTTCCT
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEecCCEEEEChhhcCCCCcceeeeeeeccccccccccceEEEEEecccccc
Confidence            789999999999999999998899999999999999999999854                                   


Q ss_pred             ---CCCcee------------------eccC-cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhc---C
Q psy8662         132 ---GLGIWV------------------TIRG-KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY---E  186 (260)
Q Consensus       132 ---~~~i~l------------------~~~~-~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~---~  186 (260)
                         .+++.|                  +... ....+..+.++|||.+...+..+..|+.+.+++++.++|+..+.   .
T Consensus        81 ~~~~~diAll~l~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~~~  160 (232)
T d1orfa_          81 ATREGDLKLLQLTEKAKINKYVTILHLPKKGDDVKPGTMCQVAGWGRTHNSASWSDTLREVEITIIDRKVCNDRNHYNFN  160 (232)
T ss_dssp             TTCTTCCEEEEESSCCCCSSSSCCCCCCSSCCCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEEECHHHHTSTTTTTTT
T ss_pred             cccCcceeEeeeccceeeeeeEeeeeecccccccccCceeeeccccccCCcccCChhheEEEeecCCHHHHhhhhhcccC
Confidence               122222                  1111 12246789999999888777777889999999999999986532   2


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEech-hhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVN-RYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~-~y~~WI~~~~~~  259 (260)
                      ..+.++++|++......+.|.||+||||+++    |+|+||+|||.  .|+..+.|+|||||+ +|++||+++|+.
T Consensus       161 ~~~~~~~~C~~~~~~~~~~c~gdsG~Pl~~~----~~l~GI~S~g~~~~c~~~~~p~vyt~Vs~~y~~WI~~~i~g  232 (232)
T d1orfa_         161 PVIGMNMVCAGSLRGGRDSCNGDSGSPLLCE----GVFRGVTSFGLENKCGDPRGPGVYILLSKKHLNWIIMTIKG  232 (232)
T ss_dssp             TCCCTTEEEEECSSCCCBCCTTCTTCEEEET----TEEEEEEEECCTTCTTCTTSCEEEEECCHHHHHHHHHHHCC
T ss_pred             ccccCceEEeccCCCCcccccccCCCeEEEc----CEEEEEEEEECCCCCCCCCCCcEEEEeeHHHHHHHHHHhCC
Confidence            3578899999887777899999999999985    48999999985  577778899999996 799999999873

>d1hj8a_ b.47.1.2 (A:) Trypsin(ogen) {North atlantic salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: North atlantic salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=1.3e-38  Score=266.18  Aligned_cols=166  Identities=38%  Similarity=0.725  Sum_probs=141.3

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++++.++|||+|+|+ .+.++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~~~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (222)
T d1hj8a_           1 IVGGYECKAYSQPHQVSLN-SGYHFCGGSLVNENWVVSAAHCYKSRVEVRLGEHNIKVTEGSEQFISSSRVIRHPNYSSY   79 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCSSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTT
T ss_pred             CCCCEECCCCCCCeEEEEE-CCCEEEEEEEeeCCEEEeCceecccccCcceeeccccccCCccccccceEEEeccccccc
Confidence            7899999999999999995 5678999999999999999999964                                   


Q ss_pred             --CCCcee------------------eccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCC
Q psy8662         132 --GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITP  191 (260)
Q Consensus       132 --~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~  191 (260)
                        ++++.|                  +. .....+..+.+.||+...........|+.+.+.+++.++|+.. +...+.+
T Consensus        80 ~~~~diALl~l~~~v~~~~~~~picl~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~~~~~  157 (222)
T d1hj8a_          80 NIDNDIMLIKLSKPATLNTYVQPVALPT-SCAPAGTMCTVSGWGNTMSSTADSNKLQCLNIPILSYSDCNNS-YPGMITN  157 (222)
T ss_dssp             TTBSCCEEEEESSCCCCSSSCCCCBCCS-SCCCTTCEEEEEESSCCCCSSCCTTBCEEEEEEBCCHHHHHHH-STTCCCT
T ss_pred             ccCCcEEEEecccceeeeceeEEEECCC-cCCCCCceEEEEeccccccccccccccEEEEEEEeCHHHHhhh-ccccccc
Confidence              122222                  21 2233567889999998776666678899999999999999985 5667889


Q ss_pred             CeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       192 ~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+||++......+.|.||+||||+++    ++|+||+||+.+|+..+.|++||||+.|++||+++|+.
T Consensus       158 ~~~C~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g~~~~~~~~p~v~t~v~~y~~WI~~~i~~  221 (222)
T d1hj8a_         158 AMFCAGYLEGGKDSCQGDSGGPVVCN----GELQGVVSWGYGCAEPGNPGVYAKVCIFNDWLTSTMAS  221 (222)
T ss_dssp             TEEEESCTTSSCBCCTTCTTCEEEET----TEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHC
T ss_pred             ceEEEccCCCCcccccCCcccEEEEC----CEEEEEEEEecCCCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence            99999877777889999999999985    48999999999999888999999999999999999974

>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Mold (Fusarium oxysporum) [TaxId: 5507]

Probab=100.00  E-value=1.4e-38  Score=265.92  Aligned_cols=167  Identities=41%  Similarity=0.766  Sum_probs=140.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||+++.+++|||+|+|..+++++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~h~~~~~   80 (224)
T d1gdna_           1 IVGGTSASAGDFPFIVSISRNGGPWCGGSLLNANTVLTAAHCVSGYAQSGFQIRAGSLSRTSGGITSSLSSVRVHPSYSG   80 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGEEEEESCSBSSSSSEEEEEEEEEECTTCBT
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEeCCEEEECcccceeccccccceeeccccccCCcceEEEEEEEeeecccc
Confidence            789999999999999999999999999999999999999999864                                   


Q ss_pred             -CCCceee-------------------ccCcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCCCC
Q psy8662         132 -GLGIWVT-------------------IRGKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRIT  190 (260)
Q Consensus       132 -~~~i~l~-------------------~~~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~i~  190 (260)
                       .+||.|.                   .......+..+.++|||.+..+. .....|++..+++++.++|+..+....+.
T Consensus        81 ~~~DiAll~L~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~v~~i~~~~C~~~~~~~~~~  160 (224)
T d1gdna_          81 NNNDLAILKLSTSIPSGGNIGYARLAASGSDPVAGSSATVAGWGATSEGGSSTPVNLLKVTVPIVSRATCRAQYGTSAIT  160 (224)
T ss_dssp             TBSCCEEEEESSCCCCBTTBCCCCBCCTTCCCCTTCEEEEEESCCSSTTCSCCCSBCEEEEEEEECHHHHHHHHCTTTSC
T ss_pred             ccceeEEEeeccccccccccceeeccccccccccceeeeeeccCccccCCCcCCCEeeeeEEEEeCHHHHhcccccCccc
Confidence             1223321                   11122346789999999876543 34567999999999999999987666778


Q ss_pred             CCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHH
Q psy8662         191 PNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN  256 (260)
Q Consensus       191 ~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  256 (260)
                      +.++|+.......+.|.+|+||||++   .+|+|+||+|||..|+..+.|+|||||++|++||+..
T Consensus       161 ~~~~~~~~~~~~~~~c~~dsG~pl~~---~~~~l~GI~S~g~~c~~~~~p~vyt~v~~y~~WIe~~  223 (224)
T d1gdna_         161 NQMFCAGVSSGGKDSCQGDSGGPIVD---SSNTLIGAVSWGNGCARPNYSGVYASVGALRSFIDTY  223 (224)
T ss_dssp             TTEEEECCTTCCCBCCTTCTTCEEEC---TTCCEEEEEEECSSSSCTTCCEEEEETTTTHHHHHHH
T ss_pred             cceeeeecCCCCccccccccCCceEe---cCCEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHC
Confidence            88898887777788999999999985   4469999999999999888999999999999999864

>d1mzaa_ b.47.1.2 (A:) Granzyme K {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-38  Score=267.30  Aligned_cols=170  Identities=39%  Similarity=0.692  Sum_probs=140.9

Q ss_pred             ceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          86 RIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        86 ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      ||+||++|+++||||+|+|++.++++|+||||+++||||||||+..                                  
T Consensus         2 ri~gG~~a~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~i~~h   81 (240)
T d1mzaa_           2 EIIGGKEVSPHSRPFMASIQYGGHHVCGGVLIDPQWVLTAAHCQYRFTKGQSPTVVLGAHSLSKNEASKQTLEIKKFIPF   81 (240)
T ss_dssp             CCCCCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGSCTTCSCSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred             EEECCEECCCCCCCcEEEEEECCeEEEEEEEEeCCEEEECeEcccccCCcceeEEEEeecccCcCCccceeEeeeeeeee
Confidence            7999999999999999999999999999999999999999999864                                  


Q ss_pred             --------CCC------------------ceeeccCcccCCceEEEEeeeecCC-CCCCCccceEEEEEeeChhhHhhhh
Q psy8662         132 --------GLG------------------IWVTIRGKSFSNKTGIVTGWGVQKQ-GGSTSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       132 --------~~~------------------i~l~~~~~~~~~~~~~v~Gwg~~~~-~~~~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                              +++                  ++|+..........+.+.|||.+.. .+..+..|+...+.++..++|+...
T Consensus        82 ~~~~~~~~~~diAll~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~  161 (240)
T d1mzaa_          82 SRVTSDPQSNDIMLVKLQTAAKLNKHVKMLHIRSKTSLRSGTKCKVTGWGATDPDSLRPSDTLREVTVTVLSRKLCNSQS  161 (240)
T ss_dssp             CCSSCSSSSSCCEEEEESSCCCCBTTBCCCCBCSSCCCCTTCEEEEEECCCSSTTCSSCCSBCEEEEEEECCHHHHTSTT
T ss_pred             ccccccccCcceEEEeecceeeeeeccccccccccccccceeeEEEEEeccccCCcCcCCcccEEEEEEEecHHHhhhhh
Confidence                    111                  2223333344566788999987664 3345678999999999999998753


Q ss_pred             cC---CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEech-hhHHHHHHHhhc
Q psy8662         185 YE---NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVN-RYLTWIKNNTID  259 (260)
Q Consensus       185 ~~---~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~-~y~~WI~~~~~~  259 (260)
                      ..   ....+.++|++...+..+.|.||+||||+++    ++|+||+|++..|+..+.|++||||+ +|++||+++|+.
T Consensus       162 ~~~~~~~~~~~~~c~~~~~~~~~~C~gDsGgPl~~~----~~l~Gi~S~g~~c~~~~~p~vftrvs~~y~~WI~~~i~~  236 (240)
T d1mzaa_         162 YYNGDPFITKDMVCAGDAKGQKDSCKGDAGGPLICK----GVFHAIVSGGHECGVATKPGIYTLLTKKYQTWIKSNLVP  236 (240)
T ss_dssp             TTTTTTCCCTTEEEEECTTSCCCCCTTCTTCEEEET----TEEEEEECSSCCSSCTTCCEEEEECCHHHHHHHHHHTCC
T ss_pred             hccCCcccccceEEeccCCCCccCccCCCCCeEEEC----CEEEEEEEeCCCCCCCCCCeEEEEEHHHHHHHHHHHccC
Confidence            22   2456789999887777889999999999984    48999999999999888999999997 799999999874

>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Plasmin(ogen), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6e-38  Score=265.24  Aligned_cols=175  Identities=38%  Similarity=0.742  Sum_probs=140.9

Q ss_pred             CCceeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          84 KTRIVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        84 ~~ri~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      ..||+||.+|.+++|||+|+|+.+ +.++|+||||+++||||||||+..                               
T Consensus        15 ~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (247)
T d1rjxb_          15 PGAVVGGCVAYPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPRPSSYKVILGAHQEVNLEPHVQEIEVSRL   94 (247)
T ss_dssp             CTTSTTCEECCTTSSTTEEEEEETTCCEEEEEEEEETTEEEEEGGGGTTCSCGGGEEEEESCCBSSSCCTTCEEEEEEEE
T ss_pred             CCeEECCEECCCCCCCcEEEEEECCCCEEEEEEEEeCCEEEeeeEEEEeccCCccceeeccccccccccceeeEEeeccc
Confidence            568999999999999999999875 468999999999999999999964                               


Q ss_pred             -----CCCceeec------------------c-CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhc-C
Q psy8662         132 -----GLGIWVTI------------------R-GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY-E  186 (260)
Q Consensus       132 -----~~~i~l~~------------------~-~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~-~  186 (260)
                           .+|+.|..                  . ........+...||+.... ......++.+.+.+++.+.|..... .
T Consensus        95 ~~~~~~~DiAl~~L~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (247)
T d1rjxb_          95 FLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGETQG-TFGAGLLMEAQLPVIENKVCNRYEFLN  173 (247)
T ss_dssp             EECSSSCCEEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEECCC-----CCCSBCEEEEEEEECHHHHTSTTTTT
T ss_pred             cCCCccchhhhhhhhcccccccccccccccccccccCCCceeeecccccccC-CCCCCcceEEEEEEEchHHhhhhhccC
Confidence                 12222210                  0 1112345667778876543 3456788999999999999977543 3


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ....++++|+.......+.|.||+|+||++..+++|+|+||+||+..|+..+.|++||||++|++||+++|++
T Consensus       174 ~~~~~~~~c~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~S~~~~c~~~~~p~v~t~v~~~~~WI~~~i~~  246 (247)
T d1rjxb_         174 GRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMRN  246 (247)
T ss_dssp             TCSCTTEEEESCSSSCCCBCCSCTTCEEEEECSSSEEEEEEECTTSCCBBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             cccccceeEEeccCCCcccccCCccceEEEeeCCEEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhc
Confidence            3567889999877777889999999999999999999999999999998888899999999999999999975

>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor IXa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-38  Score=263.78  Aligned_cols=171  Identities=37%  Similarity=0.742  Sum_probs=144.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||+++..++|||+|+|..++.++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~C~GtLI~~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (235)
T d1rfna_           1 VVGGEDAKPGQFPWQVVLNGKVDAFCGGSIVNEKWIVTAAHCVETGVKITVVAGEHNIEETEHTEQKRNVIRIIPHHNYN   80 (235)
T ss_dssp             CBTCEECCTTSSTTEEEEESSSTTCEEEEEEETTEEEECGGGCCTTCCCEEEESCSBSSSCCSCCEEEEEEEEEECTTCB
T ss_pred             CCCCEECCCCCcCCEEEEecCCCEEEEEEEeeCCEEEEChhhcCCCCceEEEEeecccccCCCCcceeeeeEEeeccCCC
Confidence            789999999999999999988889999999999999999999865                                   


Q ss_pred             ------CCCceeeccCc---------------------ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhh
Q psy8662         132 ------GLGIWVTIRGK---------------------SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       132 ------~~~i~l~~~~~---------------------~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                            .++|.|.....                     ...+..+.+.||+...........|+++.+++++...|... 
T Consensus        81 ~~~~~~~~diAllkL~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~c~~~-  159 (235)
T d1rfna_          81 AAINKYNHDIALLELDEPLVLNSYVTPICIADKEYTNIFLKFGSGYVSGWGRVFHKGRSALVLQYLRVPLVDRATCLRS-  159 (235)
T ss_dssp             TTTBSSTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHHTTSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHHH-
T ss_pred             CCcCccCceEEEEEeCCCccCCCccceeeeccccccccccccceEEEeccccccccccccCcceEEEEecccccccccc-
Confidence                  12233311111                     11345678899988776666677899999999999999875 


Q ss_pred             cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         185 YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       185 ~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ....+.+..+|+.......+.|.||+||||++..+++|+|+||+|++..|+..+.|.+||||++|++||+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~l~Gi~s~g~~~~~~~~p~vyt~v~~~~~WI~~~~~  233 (235)
T d1rfna_         160 TKFTIYNNMFCAGFHEGGRDSCQGDSGGPHVTEVEGTSFLTGIISWGEECAMKGKYGIYTKVSRYVNWIKEKTK  233 (235)
T ss_dssp             CSSCCCTTEEEESCSSCSCBCCTTCTTCEEEEESSSCEEEEEEEEEESSSSCTTCCEEEEEGGGTHHHHHHHHC
T ss_pred             cCceecCCeeEeecCCCCccccCCCCCceeEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhc
Confidence            44556677788776677789999999999999999999999999999999988899999999999999999997

>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepsin, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-38  Score=266.59  Aligned_cols=173  Identities=40%  Similarity=0.788  Sum_probs=145.6

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|..+||||+|+|.+++.++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~~~~~e~Pw~v~I~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~   80 (255)
T d1z8ga1           1 IVGGRDTSLGRWPWQVSLRYDGAHLCGGSLLSGDWVLTAAHCFPERNRVLSRWRVFAGAVAQASPHGLQLGVQAVVYHGG   80 (255)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEESSSSEEEECGGGCCGGGCCGGGEEEEESCSBTTCTTSEEECEEEEEEETT
T ss_pred             CCCCEECCCCCcCcEEEEEECCcEEEEEEEEeCCEEEECceecCCCCCccceeeEeeeeecccCCccEEEEEEEEEEEee
Confidence            789999999999999999999999999999999999999999854                                   


Q ss_pred             ------------CCCceeecc-------------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhH
Q psy8662         132 ------------GLGIWVTIR-------------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       132 ------------~~~i~l~~~-------------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C  180 (260)
                                  .+||.|...                   .....+..+.+.||+.....+.....++.+.+++++.+.|
T Consensus        81 ~~~~~~~~~~~~~~DiAll~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~C  160 (255)
T d1z8ga1          81 YLPFRDPNSEENSNDIALVHLSSPLPLTEYIQPVCLPAAGQALVDGKICTVTGWGNTQYYGQQAGVLQEARVPIISNDVC  160 (255)
T ss_dssp             CGGGTCTTCCCCTTCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEEECHHHH
T ss_pred             eccccccccCCccccEEEEecCCccccCcccccceecccCcccCCCcEEEeeccccccCCCcccceeEEEEEEEeCHHHh
Confidence                        123333111                   1122467889999988776666778899999999999999


Q ss_pred             hhhhc-CCCCCCCeEEeecCCCCCCCCcCCCCCceEEee----CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHH
Q psy8662         181 KKTAY-ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN----ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       181 ~~~~~-~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~----~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      +..+. ...+.+.++|.....+..+.|.||+||||++..    .++|+|+||+||+.+|+....|++||||+.|++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~~~~~~~~~~~l~Gi~S~g~~c~~~~~p~vft~V~~y~~WI~~  240 (255)
T d1z8ga1         161 NGADFYGNQIKPKMFCAGYPEGGIDACQGDSGGPFVCEDSISRTPRWRLCGIVSWGTGCALAQKPGVYTKVSDFREWIFQ  240 (255)
T ss_dssp             TSTTTTTTCCCTTEEEESCTTCSCBCCTTCTTCEEEEEECTTSSCEEEEEEEEEEBSSSSCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhhhccCccccCcceEEecCCCCcccccCccccceEEecCCCCCCcEEEEEEEEECCCCCCCCCCEEEEEHHHhHHHHHH
Confidence            87543 345777888887777778899999999999875    4789999999999999998899999999999999999


Q ss_pred             Hhhc
Q psy8662         256 NTID  259 (260)
Q Consensus       256 ~~~~  259 (260)
                      +|+.
T Consensus       241 ~i~~  244 (255)
T d1z8ga1         241 AIKT  244 (255)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9974

>d2p3ub1 b.47.1.2 (B:16-243) Coagulation factor Xa, protease domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa, protease domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-37  Score=259.66  Aligned_cols=171  Identities=41%  Similarity=0.772  Sum_probs=142.5

Q ss_pred             eeCCeeCCCCCCceEEEEEecC-eeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK-RFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~-~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||++|..++|||+|+|+.+. .++|+||||+++||||||||+..                                  
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~h~~~   80 (233)
T d2p3ub1           1 IVGGQECKDGECPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF   80 (233)
T ss_dssp             CBSSEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGGGSCSSCEEEESCSBTTSCCSCCEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCCCcEEEEEecCCCeEEEEEEEeCCEEEECceecccccccccccccccccccCCCceeecceeEEEeecc
Confidence            7899999999999999998754 68999999999999999999864                                  


Q ss_pred             -----CCCceeeccCc----------------------ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhh
Q psy8662         132 -----GLGIWVTIRGK----------------------SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       132 -----~~~i~l~~~~~----------------------~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                           +.+|.|.....                      ......+.+.+|+.....+.....+++..+++++.+.|... 
T Consensus        81 ~~~~~~~diAll~L~~pv~~~~~v~pi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~-  159 (233)
T d2p3ub1          81 TKETYDFDIAVLRLKTPITFRMNVAPACLPERDWAESTLMTQKTGIVSGFGRTHEKGRQSTRLKMLEVPYVDRNSCKLS-  159 (233)
T ss_dssp             CTTTCTTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHHTTTSSEEEEEESCBSSTTSCBCSBCEEEEEEBCCHHHHHHH-
T ss_pred             cccccccceeeeecccceeecccccccccCCcccccccccccceEEEecCCccccCCCccccccccccccccchhhhcc-
Confidence                 12233311111                      11345678888887776666667789999999999999886 


Q ss_pred             cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         185 YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       185 ~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ....+..+++|+.........|.||+||||++..+++|+|+||+||+..|+..+.|++||||++|++||+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~gdsGgpl~~~~~~~~~L~Gv~s~g~~c~~~~~p~vyt~v~~y~~WI~~~i~  233 (233)
T d2p3ub1         160 SSFIITQNMFCAGYDTKQEDACQGDSGGPHVTRFKDTYFVTGIVSWGEGCARKGKYGIYTKVTAFLKWIDRSMK  233 (233)
T ss_dssp             CSSCCCTTEEEESCSSSSCBCCTTTTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHTC
T ss_pred             cCceEeecceeeecccccCCCcCCCcccccEEecCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            45566788899877777788999999999999999999999999999999988899999999999999999985

>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.6e-38  Score=265.65  Aligned_cols=176  Identities=34%  Similarity=0.631  Sum_probs=143.2

Q ss_pred             CCCCceeCCeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc--------------------------
Q psy8662          82 NKKTRIVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ--------------------------  131 (260)
Q Consensus        82 ~~~~ri~gG~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~--------------------------  131 (260)
                      +.+.||+||++|..++|||+|+|...    ..++|+||||+++||||||||+..                          
T Consensus         9 ~~~~ri~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   88 (251)
T d1pytd_           9 NLSARVVGGEDAIPHSWPWQISLQYLRDNTWRHTCGGTLITPNHVLTAAHCISNTLTYRVALGKNNLEVEDEAGSLYVGV   88 (251)
T ss_dssp             CSSSSCCSSCCCCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTCCEEEEESCSBTTCSCCSSCEEEEE
T ss_pred             CCCCeEECCEECCCCCCCcEEEEEEEeCCCceeEEeEEEEcCCeEEEeeecccccccceeeeeeeeeecccCCCceEEeE
Confidence            56789999999999999999999752    247899999999999999999965                          


Q ss_pred             --------------CCCcee------------------eccC-cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChh
Q psy8662         132 --------------GLGIWV------------------TIRG-KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNA  178 (260)
Q Consensus       132 --------------~~~i~l------------------~~~~-~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~  178 (260)
                                    .+|+.|                  +... ....+..+.+.||+.....+.....++...+.+++.+
T Consensus        89 ~~i~~h~~y~~~~~~~diali~l~~pi~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  168 (251)
T d1pytd_          89 DTIFVHEKWNSFLVRNDIALIKLAETVELGDTIQVACLPSEGSLLPQDYPCFVTGWGRLYTNGPIAAELQQGLQPVVDYA  168 (251)
T ss_dssp             EEEEECTTCBTTTTBSCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEECBCCCSSCCSCCCSBCBCCEEECBCHH
T ss_pred             EEEEEeeeecccccCCceeeeecCCCcccCceeEEEEeeccccCCCCceeEEEecCccccCCCcccceeceeeccccCHH
Confidence                          112222                  1111 1224667889999988776666677888889999999


Q ss_pred             hHhhhhc-CCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHH
Q psy8662         179 ECKKTAY-ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       179 ~C~~~~~-~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      +|.+.+. .......++|++... ..+.|.+|+||||++.++++|+|+||+||+.  .|+..+.|++||||+.|++||++
T Consensus       169 ~C~~~~~~~~~~~~~~~c~~~~~-~~~~c~gd~G~Pl~~~~~~~~~L~Gi~S~~~~~~c~~~~~p~vyt~v~~y~~WI~~  247 (251)
T d1pytd_         169 TCSQRDWWGTTVKETMVCAGGDG-VISACNGDSGGPLNCQADGQWDVRGIVSFGSGLSCNTFKKPTVFTRVSAYIDWINQ  247 (251)
T ss_dssp             HHTSTTTTTTTCCTTEEEECCSC-SSCCCCSCTTCEEEEESSSSEEEEEEEEECCSSCTTBTTBCEEEEEGGGGHHHHHH
T ss_pred             HHhhhhcccccccCceEEeccCC-CCccccCCCCCceEEeeCCEEEEEEEEEECCCCCCCCCCCCeEEEEHHHhHHHHHH
Confidence            9987643 446778899997544 4789999999999999999999999999986  57777889999999999999999


Q ss_pred             Hhh
Q psy8662         256 NTI  258 (260)
Q Consensus       256 ~~~  258 (260)
                      +|+
T Consensus       248 ~i~  250 (251)
T d1pytd_         248 KLQ  250 (251)
T ss_dssp             HTT
T ss_pred             hcc
Confidence            986

>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Matriptase MTSP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.7e-37  Score=261.49  Aligned_cols=171  Identities=39%  Similarity=0.718  Sum_probs=143.1

Q ss_pred             eeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||.+|..++|||+|.|+.. +.++|+||||+++||||||||+..                                  
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~C~GtlIs~~~VLTaA~Cv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   80 (241)
T d1eaxa_           1 VVGGTDADEGEWPWQVSLHALGQGHICGASLISPNWLVSAAHCYIDDRGFRYSDPTQWTAFLGLHDQSQRSAPGVQERRL   80 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEECSSSEEEECGGGGCCBTTBCTTCGGGEEEEESCCBTTCTTSTTCEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEECCCCEEEEEEEEcCCEEEECeeeeecCCceeeeccceeeEEeeeeecccccCCCcEEEEE
Confidence            689999999999999999875 567999999999999999999864                                  


Q ss_pred             --------------CCCcee------------------ec-cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChh
Q psy8662         132 --------------GLGIWV------------------TI-RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNA  178 (260)
Q Consensus       132 --------------~~~i~l------------------~~-~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~  178 (260)
                                    .+++.|                  +. ......+..+...||+...........|+++.+++++.+
T Consensus        81 ~~i~~Hp~y~~~~~~~diAll~L~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~  160 (241)
T d1eaxa_          81 KRIISHPFFNDFTFDYDIALLELEKPAEYSSMVRPICLPDASHVFPAGKAIWVTGWGHTQYGGTGALILQKGEIRVINQT  160 (241)
T ss_dssp             EEEEECTTCCTTTCTTCCEEEEESSCCCCBTTBCCCBCCCTTCCCCTTCEEEEEESSBSSTTSCBCSBCEEEEEEECCHH
T ss_pred             EEEEECCcccccccCCcccccccCCceecCcccceeeccccccccccceeEEEeccCCccccccccccceEEEEEEeCHH
Confidence                          112222                  11 011123567888999887766666778999999999999


Q ss_pred             hHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         179 ECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       179 ~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      .|++. +...+...++|++......+.|.||+||||++.. +++|+|+||+|++..|+..+.|++|+||++|++||++++
T Consensus       161 ~C~~~-~~~~~~~~~~c~~~~~~~~~~c~gd~G~pl~~~~~~g~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~  239 (241)
T d1eaxa_         161 TCENL-LPQQITPRMMCVGFLSGGVDSCQGDSGGPLSSVEADGRIFQAGVVSWGDGCAQRNKPGVYTRLPLFRDWIKENT  239 (241)
T ss_dssp             HHHHH-STTTCCTTEEEEECTTCSSBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEESGGGHHHHHHHH
T ss_pred             HHHHH-hCccccCccceeccCCCCcccccCcccceeEEEcCCCeEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHh
Confidence            99986 5666788999998877778999999999999865 589999999999999988889999999999999999998


Q ss_pred             h
Q psy8662         258 I  258 (260)
Q Consensus       258 ~  258 (260)
                      +
T Consensus       240 g  240 (241)
T d1eaxa_         240 G  240 (241)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-37  Score=257.26  Aligned_cols=166  Identities=40%  Similarity=0.709  Sum_probs=136.2

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEecccccccC----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQG----------------------------------  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~~----------------------------------  132 (260)
                      |+||.+|+.++|||+|+|+.++.++|+||||+++||||||||+...                                  
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~y~~~   80 (221)
T d1lo6a_           1 LVHGGPCDKTSHPYQAALYTSGHLLCGGVLIHPLWVLTAAHCKKPNLQVFLGKHNLRQRESSQEQSSVVRAVIHPDYDAA   80 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCTTCEEEESCSBTTSCCTTCEEEEEEEEEECTTCCTT
T ss_pred             CCCCEECCCCCCCCEEEEEECCcEEEEEEEEeCCEEEECeeccccccceeeceeeecccCccceeeeccccccCCCcccc
Confidence            6899999999999999999999999999999999999999998651                                  


Q ss_pred             ---CCceee-----------------ccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCC
Q psy8662         133 ---LGIWVT-----------------IRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPN  192 (260)
Q Consensus       133 ---~~i~l~-----------------~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~  192 (260)
                         +++.|.                 .......+..+.++|||..... ..+..|+...+++++.++|++.+ ...+.++
T Consensus        81 ~~~~diAll~l~~~~~~~~~v~pi~l~~~~~~~~~~~~~~Gwg~~~~~-~~~~~l~~~~~~~~~~~~C~~~~-~~~~~~~  158 (221)
T d1lo6a_          81 SHDQDIMLLRLARPAKLSELIQPLPLERDCSANTTSCHILGWGKTADG-DFPDTIQCAYIHLVSREECEHAY-PGQITQN  158 (221)
T ss_dssp             TCTTCCEEEEESSCCCCBTTBCCCCBCCCTTCCCCEEEEEESSCCTTS-SCCSBCEEEEEEEECHHHHHHHS-TTTCCTT
T ss_pred             cccceeEEeecccccceeeeEEeccccccCCcccceEEEEecccccCC-CCCccceEEEEEEecHHHHHHHc-CCCccCC
Confidence               112221                 0112345778999999976643 45678999999999999999864 4455566


Q ss_pred             eEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         193 MLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       193 ~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ++|..........|.||+||||+++.    +|+||+|||. +|+..+.|++||||++|++||+++|+
T Consensus       159 ~~~~~~~~~~~~~c~gd~G~Pl~~~~----~l~Gi~S~g~~~c~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1lo6a_         159 MLCAGDEKYGKDSCQGDSGGPLVCGD----HLRGLVSWGNIPCGSKEKPGVYTNVCRYTNWIQKTIQ  221 (221)
T ss_dssp             EEEEECTTTCCBCCTTTTTCEEEETT----EEEEEEEECCSSCCCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ceeeeccccCCCCccCCCCCcEEECC----EEEEEEEEccCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            66666556668899999999999864    8999999987 58877889999999999999999985

>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.5e-37  Score=258.71  Aligned_cols=166  Identities=36%  Similarity=0.754  Sum_probs=139.7

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------------C----
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------------G----  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------~----  132 (260)
                      |+||+++.+++|||+|+|. .+.++|+||||+++||||||||+..                              +    
T Consensus         1 i~gG~~~~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hp~y~~~   79 (223)
T d1j16a_           1 IVGGYTCQENSVPYQVSLN-SGYHFCGGSLINDQWVVSAAHCYKSRIQVRLGEHNINVLEGNEQFVNAAKIIKHPNFDRE   79 (223)
T ss_dssp             CBSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCSSCEEEESCSBTTSCCSCCEEEEEEEEEECTTCBTT
T ss_pred             CCCCEECCCCCCCcEEEEe-CCCEEEEEEEEcCCEEEeCHHHCCCcCCceeeeeeeccccccceeeeeeeEEecCCCCcc
Confidence            6899999999999999995 5678999999999999999999964                              1    


Q ss_pred             ---CCce------------------eeccCcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCCCC
Q psy8662         133 ---LGIW------------------VTIRGKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRIT  190 (260)
Q Consensus       133 ---~~i~------------------l~~~~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~i~  190 (260)
                         ++|.                  |+. .....+..+.++|||.+...+ .....|+...+.+++.++|+.. +...+.
T Consensus        80 ~~~~diAll~L~~~v~~~~~~~picL~~-~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~~~~  157 (223)
T d1j16a_          80 TYNNDIMLIKLSSPVKLNARVATVALPS-SCAPAGTQCLISGWGNTLSSGVNEPDLLQCLDAPLLPQADCEAS-SSFIIT  157 (223)
T ss_dssp             TTBTCCEEEEESSCCCCBTTBCCCBCCS-SCCCTTCEEEEEESSCCCSSSCCCCSBCEEEEEEEECHHHHHSS-SSCCCC
T ss_pred             ccceeEEEEEecCccccceeEEEEecCC-cCCCCCCEEEEEeeeeeeCCCccCcceeeEEEEEEEEhhHhhcc-ccceeC
Confidence               1222                  222 223457889999999866544 3456799999999999999974 556788


Q ss_pred             CCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         191 PNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       191 ~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ++++|+.........|.||+|+||+++    |+|+||+|++..|+..+.|++||||+.|++||+++|+.
T Consensus       158 ~~~~C~~~~~~~~~~c~gd~g~pl~~~----~~L~Gi~s~~~~~~~~~~p~vft~v~~~~~WI~~~i~~  222 (223)
T d1j16a_         158 DNMVCVGFLEGGKDACQGDSGGPVVCN----GELQGIVSWGYGCALPDNPGVYTKVCNYVDWIQDTIAA  222 (223)
T ss_dssp             TTEEEESCTTCSCBCCTTCTTCEEEET----TEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             CCceEEecCCCCCcccCCccCCcEEEe----eEEEEEEEEccCCCCCCCCEEEEEhHHhHHHHHHHHhc
Confidence            899999877777889999999999985    48999999999999888999999999999999999974

>d1fxya_ b.47.1.2 (A:) Coagulation factor Xa-trypsin chimera {Synthetic, based on Homo sapiens sequence}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor Xa-trypsin chimera
species: Synthetic, based on Homo sapiens sequence

Probab=100.00  E-value=3e-37  Score=258.65  Aligned_cols=167  Identities=44%  Similarity=0.890  Sum_probs=139.6

Q ss_pred             eeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||++|..+||||+|+|... +.++|+||||+++||||||||+..                                  
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (228)
T d1fxya_           1 IVGGYNCKDGEVPWQALLINEENEGFCGGTILSEFYILTAAHCLYQAKRFKVRVGDRNTEQEEGGEAVHEVEVVIKHNRF   80 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEECSSSEEEECGGGTTSCSSCEEEEECSCTTTCCCCEEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCCCcEEEEEEcCCCeEEEEEEeeCCEEEECceeeecccccccccccccccccCCcceeeeeeccceeeee
Confidence            689999999999999999875 478999999999999999999865                                  


Q ss_pred             -----CCCcee------------------eccCcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           +++|.|                  +.. ....+..+.++|||.+.... .....|+++.+.+++.++|+.. +..
T Consensus        81 ~~~~~~~diAl~~l~~~~~~~~~~~picL~~~-~~~~~~~~~~~gwg~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~  158 (228)
T d1fxya_          81 TKETYDFDIAVLRLKTPITFRMNVAPASLPTA-PPATGTKCLISGWGNTASSGADYPDELQCLDAPVLSQAKCEAS-YPG  158 (228)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCCCCSS-CCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEEBCCHHHHHHH-STT
T ss_pred             eccccccceeehhccccccccccccccccccc-ccccccEEEEEecccccCCCCCCCchhEEEEEEEeCHHHHhhh-cCC
Confidence                 112222                  222 22346789999999876543 3457799999999999999885 556


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+.+.++|+.........|.+|+||||+++    |+|+||+|++..|+..+.|.+||||++|++||+++++.
T Consensus       159 ~~~~~~~c~~~~~~~~~~~~gd~G~Pl~~~----~~l~Gi~s~g~~~~~~~~p~vft~v~~~~~WI~~~i~~  226 (228)
T d1fxya_         159 KITSNMFCVGFLEGGKDSCQGDSGGPVVCN----GQLQGVVSWGDGCAQKNKPGVYTKVYNYVKWIKNTIAA  226 (228)
T ss_dssp             TCCTTEEEESCTTCSCBCCTTCTTCEEEET----TEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHHHHHHH
T ss_pred             cccceeeEeecCCCCcccccCccCccEEEe----CEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHh
Confidence            678889999877777899999999999985    48999999999998878899999999999999999874

>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Tonin
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=3.7e-37  Score=258.76  Aligned_cols=166  Identities=34%  Similarity=0.677  Sum_probs=135.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEecccccccC----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQG----------------------------------  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~~----------------------------------  132 (260)
                      |+||++|..+||||||+|+  .+++|+||||+++||||||||+...                                  
T Consensus         1 i~gG~~a~~~~~Pw~v~i~--~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (235)
T d1tona_           1 IVGGYKCEKNSQPWQVAVI--NEYLCGGVLIDPSWVITAAHCYSNNYQVLLGRNNLFKDEPFAQRRLVRQSFRHPDYIPL   78 (235)
T ss_dssp             CBSCEECCTTSCTTEEEEE--SSSEEEEEEEETTEEEECGGGCCSCCEEEESCSBTTSCCTTCEEECEEEEEECTTCCCC
T ss_pred             CCCCEECCCCCCCeEEEEc--CCeEEEEEEecCCEEEECceecCCCCceEEeeeeeecCCCceeEeeeeeeeeeeeceee
Confidence            6899999999999999997  4589999999999999999999541                                  


Q ss_pred             --------------CCceeecc-----------------CcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhH
Q psy8662         133 --------------LGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       133 --------------~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C  180 (260)
                                    .++.|...                 ........+.++|||.+.... .....|+.+.+++++.++|
T Consensus        79 ~~~~~~~~~~~~~~~Diall~L~~~v~~~~~i~~i~l~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C  158 (235)
T d1tona_          79 IVTNDTEQPVHDHSNDLMLLHLSEPADITGGVKVIDLPTKEPKVGSTCLASGWGSTNPSEMVVSHDLQCVNIHLLSNEKC  158 (235)
T ss_dssp             --------CCCCSTTCCEEEEESSCCCCCSSCCCCCCCCSCCCTTCEEEEEESSCSSSSSCCCCSBCEEEEEEEECGGGC
T ss_pred             eeeecccccccccccceeEEEecCccccCCcccccccccccccccceeEEEEccccccccccccccceeeeeeeeCHHHH
Confidence                          11221110                 111235678899999776543 3456799999999999999


Q ss_pred             hhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       181 ~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +.. +.....+.++|+.......+.|.||+||||+++    |+|+||+||+. .|+..+.|++||||++|++||+++|++
T Consensus       159 ~~~-~~~~~~~~~~c~~~~~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~g~~~c~~~~~p~vyt~v~~y~~WI~~~i~~  233 (235)
T d1tona_         159 IET-YKDNVTDVMLCAGEMEGGKDTCAGDSGGPLICD----GVLQGITSGGATPCAKPKTPAIYAKLIKFTSWIKKVMKE  233 (235)
T ss_dssp             GGG-GSTTGGGGEEEEECTTCSCBCCTTCTTCEEEET----TEEEEEECCCCSSCSCTTCCEEEEEGGGGHHHHHHHHHH
T ss_pred             HHH-hCCCCCCCceEeCcCCCCccccCCCcCCeEEEc----CEEEEEEEeCCCCCCCCCCCeEEEEHHHHHHHHHHHHHH
Confidence            986 455667889999877777889999999999984    59999999987 577778899999999999999999985

>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: (alpha,gamma)-chymotrypsin(ogen)
species: Red fire ant (Solenopsis invicta) [TaxId: 13686]

Probab=100.00  E-value=4.3e-37  Score=255.95  Aligned_cols=165  Identities=34%  Similarity=0.679  Sum_probs=139.2

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|..+||||+|+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~h~~y~   80 (222)
T d1eq9a_           1 IVGGKDAPVGKYPYQVSLRLSGSHRCGASILDNNNVLTAAHCVDGLSNLNRLKVHVGTNYLSESGDVYDVEDAVVNKNYD   80 (222)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEECSSSEEEECHHHHTTCSCGGGEEEEESCSBTTSCCEEEEEEEEEECTTCB
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEEeCCEEEECceeccccccccceeeecceeccccCcceeeeeeEEEeeccc
Confidence            789999999999999999999999999999999999999999864                                   


Q ss_pred             ----CCC------------------ceeeccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCC
Q psy8662         132 ----GLG------------------IWVTIRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRI  189 (260)
Q Consensus       132 ----~~~------------------i~l~~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i  189 (260)
                          .++                  ++|+..........+.++||+.+...+..+..++...+..++...|.+.+  ..+
T Consensus        81 ~~~~~~diAll~L~~~~~~~~~v~pi~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~--~~~  158 (222)
T d1eq9a_          81 DFLLRNDVALVHLTNPIKFNDLVQPIKLSTNDEDLESNPCTLTGWGSTRLGGNTPNALQEIELIVHPQKQCERDQ--WRV  158 (222)
T ss_dssp             TTTTBCCCEEEEESSCCCCBTTBCCCEECSCCTTCTTSEEEEEECCCSSTTCCCCSBCEEEEEEEECHHHHHHHS--SSC
T ss_pred             ccccccceehhhccCCcccccccccccccccccccccceeEEeeeeeecCCCCCCccceEEEEEEechHHhcccc--ccc
Confidence                111                  22233334445678999999988777777888999999999999998753  346


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+.++|+.... ..+.|.+|+||||+++    |+|+||+|++..|+. +.|++||||+.|++||+++|++
T Consensus       159 ~~~~~c~~~~~-~~~~c~~d~G~pl~~~----~~L~GI~s~~~~c~~-~~p~vyt~v~~y~~WI~~~i~~  222 (222)
T d1eq9a_         159 IDSHICTLTKR-GEGACHGDSGGPLVAN----GAQIGIVSFGSPCAL-GEPDVYTRVSSFVSWINANLKK  222 (222)
T ss_dssp             CTTEEEECCCT-TCBCCTTCTTCEEEET----TEEEEEEEECSTTTS-SSCEEEEEGGGGHHHHHHTSCC
T ss_pred             cCcceEeccCC-CCCccccCCcCCEEEc----CEEEEEEEECCCCCC-CCCcEEEEHHHHHHHHHHHhcC
Confidence            77899997644 4789999999999984    589999999999975 5699999999999999999874

>d1hj9a_ b.47.1.2 (A:) Trypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Trypsin(ogen)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.1e-36  Score=253.86  Aligned_cols=167  Identities=39%  Similarity=0.758  Sum_probs=138.3

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|..++|||+|+|+ .+.++|+||||+++||||||||+..                                   
T Consensus         1 i~GG~~a~~~~~Pw~v~l~-~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (223)
T d1hj9a_           1 IVGGYTCGANTVPYQVSLN-SGYHFCGGSLINSQWVVSAAHCYKSGIQVRLGEDNINVVEGNEQFISASKSIVHPSYNSN   79 (223)
T ss_dssp             CCSCEECCTTSSTTEEEEE-SSSEEEEEEEEETTEEEECGGGCCSSCEEEESCSSTTSCCSCCEEEEEEEEEECTTCCTT
T ss_pred             CCCCEECCCCCCCeEEEEE-CCCEEEEEEEeeCCEEEeCeeECCCcCcceecccccccccceeeeeceeeEEeccccccc
Confidence            6899999999999999995 6678999999999999999999964                                   


Q ss_pred             --CCCceeec-----------------cCcccCCceEEEEeeeecCCC-CCCCccceEEEEEeeChhhHhhhhcCCCCCC
Q psy8662         132 --GLGIWVTI-----------------RGKSFSNKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAECKKTAYENRITP  191 (260)
Q Consensus       132 --~~~i~l~~-----------------~~~~~~~~~~~v~Gwg~~~~~-~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~  191 (260)
                        .++|.|..                 .........+.+.||+.+... ...+..|+...+++++.++|++. +...+.+
T Consensus        80 ~~~~diAll~l~~~~~~~~~~~p~cl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~~~~~  158 (223)
T d1hj9a_          80 TLNNDIMLIKLKSAASLNSRVASISLPTSCASAGTQCLISGWGNTKSSGTSYPDVLKCLKAPILSDSSCKSA-YPGQITS  158 (223)
T ss_dssp             TCTTCCEEEEESSCCCCBTTBCCCBCCSSCCCTTCEEEEEESSCCCSSSCCCCSSCEEEEEECCCHHHHHHH-STTTCCT
T ss_pred             cccchhhhhhcccceeeeeeeeccccccccccccceEEEEeeccccCCCCCCCccceEEEEeecCHHHHHHH-hCCcccc
Confidence              12233211                 112234678899999876544 34467799999999999999986 4566788


Q ss_pred             CeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         192 NMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       192 ~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +++|+....+..+.|.||+|+||++.    |+|+||+||+..|+..+.|++||||++|++||+++|+.
T Consensus       159 ~~~c~~~~~~~~~~~~gd~g~pl~~~----~~L~Gi~S~g~~c~~~~~p~vyt~v~~~~~WI~~~i~~  222 (223)
T d1hj9a_         159 NMFCAYGLEGKGDSCQGDSGGPVVCS----GKLQGIVSWGSGCQAKNKPGVYTKVCNYVSWIKQTIAS  222 (223)
T ss_dssp             TEEECCCCCCCCCCCTTCTTCEEEET----TEEEEEEEECSCCCCCCCCCEEEEGGGGHHHHHHHHTT
T ss_pred             cceEEeecCCCcccccCCCCceeEEe----CEEEEEEEEcCCCCCCCCCEEEEEHHHHHHHHHHHHhc
Confidence            89999877777889999999999985    48999999999999888999999999999999999975

>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.1e-36  Score=255.97  Aligned_cols=172  Identities=35%  Similarity=0.703  Sum_probs=137.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecC----eeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~----~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||++|+.++|||+|.|..+.    .++|+||||+++||||||||+..                               
T Consensus         1 i~gG~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~~~~   80 (241)
T d1brup_           1 VVGGEDARPNSWPWQVSLQYDSSGQWRHTCGGTLVDQSWVLTAAHCISSSRTYRVVLGRHSLSTNEPGSLAVKVSKLVVH   80 (241)
T ss_dssp             CBSCEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGCCTTSCEEEEESCSBSSSCCTTCEEEEEEEEEEC
T ss_pred             CCCCEECCCCCCCcEEEEEEcCCCcceEEeEEEEEeCCEEEECeEeeecccccceeeeccceeccCCCccccceeeeEEE
Confidence            7899999999999999998642    46899999999999999999865                               


Q ss_pred             ----------CCCceee------------------c-cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWVT------------------I-RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l~------------------~-~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                +++|.+.                  . ......+..+.+.|||........+..++.+.+++++.++|++
T Consensus        81 ~~~~~~~~~~d~~iall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C~~  160 (241)
T d1brup_          81 QDWNSNQLSNGNDIALLKLASPVSLTDKIQLGCLPAAGTILPNNYVCYVTGWGRLQTNGASPDILQQGQLLVVDYATCSK  160 (241)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESCCSSTTSCCCSBCEEEEEEEECHHHHTS
T ss_pred             eeeeeccccCCceEEEEecccccccccceeeeeeccccccCCCceeEEEEeeeccCCCCcCCCcceEEEEEEeCHHHhCc
Confidence                      1122221                  1 1112246788999999887666667789999999999999987


Q ss_pred             hhc-CCCCCCCeEEeecCCCCCCCCcCCCCCceEEe-eCCeeEEEEEEeeCCC--CCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         183 TAY-ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYA-NETVHHIVGVVSWGEG--CAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       183 ~~~-~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~-~~~~~~L~GI~S~g~~--C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ... ...+..+++|+.. ....+.|.||+||||++. .+++|+|+||+|+|..  |+..+.|++||||+.|++||+++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~-~~~~~~C~gdsGgPl~~~~~~~~~~L~Gi~S~g~~~~c~~~~~p~vyt~v~~~~~WI~~~i~  239 (241)
T d1brup_         161 PGWWGSTVKTNMICAGG-DGIISSCNGDSGGPLNCQGANGQWQVHGIVSFGSSLGCNYYHKPSVFTRVSNYIDWINSVIA  239 (241)
T ss_dssp             TTTTGGGCCTTEEEECC-SSSSBCCTTCTTCEEEEECTTSCEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHH
T ss_pred             cccccccccccceeecC-CCCccccCCCcccceEEEcCCCCEEEEEEEEECCCCCCCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            643 2356667777764 445789999999999987 4589999999999875  5677889999999999999999997


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      +
T Consensus       240 ~  240 (241)
T d1brup_         240 N  240 (241)
T ss_dssp             H
T ss_pred             c
Confidence            5

>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Kallikrein-13
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-36  Score=255.00  Aligned_cols=168  Identities=32%  Similarity=0.638  Sum_probs=137.9

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEecccccccC----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQG----------------------------------  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~~----------------------------------  132 (260)
                      |+||.++..++|||||+|+..+.++|+||||+++||||||||+...                                  
T Consensus         1 i~gG~~~~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (237)
T d1ao5a_           1 VVGGFNCEKNSQPWQVAVYYQKEHICGGVLLDRNWVLTAAHCYVDQYEVWLGKNKLFQEEPSAQHRLVSKSFPHPGFNMS   80 (237)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECTTCCCSSCEEEESCCBSSSCCSSCEECCEEEEEECTTSCGG
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEeeCCEEEECHHHcCCCceEEEEeccccccccccEEEEEEEEeeccccccc
Confidence            7899999999999999999999999999999999999999998541                                  


Q ss_pred             --------------CCceeecc-----------------CcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhH
Q psy8662         133 --------------LGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       133 --------------~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C  180 (260)
                                    .||.|...                 ........+.++||+...... .....+....+..++.+.|
T Consensus        81 ~~~~~~~~~~~~~~~DiAll~L~~~i~~~~~~~~i~lp~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~c  160 (237)
T d1ao5a_          81 LLMLQTIPPGADFSDDLMLLRLSKPADITDVVKPIALPTKEPKPGSKCLASGWGSITPTRWQKPDDLQCVFITLLPNENC  160 (237)
T ss_dssp             GGGCSSCCTTCCCTTCCEEEEESSCCCCCSSSCCCCCCCSCCCTTCEEEEEESCCSSCC-CCCCSBCEEEEEEEECHHHH
T ss_pred             ccccccccCccccccceeeeccCcccccccccceeccCCCCCcccceEEEeeeeeeccccccCCccceeeEEEEEehHHh
Confidence                          12332111                 112245688999998665443 4466788999999999999


Q ss_pred             hhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       181 ~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ... ....+.++++|+.......+.|.||+|+||+++    |+|+||+|||. .|+..+.|.+||||++|++||+++|++
T Consensus       161 ~~~-~~~~~~~~~~~~~~~~~~~~~c~gdsG~pl~~~----~~l~Gi~S~g~~~c~~~~~p~vft~V~~y~~WI~~~i~~  235 (237)
T d1ao5a_         161 AKV-YLQKVTDVMLCAGEMGGGKDTCRDDSGGPLICD----GILQGTTSYGPVPCGKPGVPAIYTNLIKFNSWIKDTMMK  235 (237)
T ss_dssp             HHH-CSSCCCTTEEEEECTTCSCBCCTTCTTCEEEET----TEEEEEEEECCSSTTCTTCCEEEECGGGGHHHHHHHHHH
T ss_pred             hhh-hcCCCCCCeEEEccCCCCCcccCCCCCCeeEEc----cEEEEEEEEecCCCCCCCCCeEEEEHHHHHHHHHHHHHh
Confidence            885 556678889999876667889999999999984    59999999986 587778899999999999999999964

>d1fi8a_ b.47.1.2 (A:) Granzyme B {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-36  Score=254.77  Aligned_cols=167  Identities=35%  Similarity=0.586  Sum_probs=138.2

Q ss_pred             eeCCeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||.+|..++|||+|+|...    +.++|+||||+++||||||||+..                               
T Consensus         1 I~gG~~a~~ge~P~~v~i~~~~~~~~~~~C~GtLI~~~~VLTaAhC~~~~~~v~~G~~~~~~~~~~~~~~~v~~i~~~~~   80 (227)
T d1fi8a_           1 IIGGHEAKPHSRPYMAYLQIMDEYSGSKKCGGFLIREDFVLTAAHCSGSKIQVTLGAHNIKEQEKMQQIIPVVKIIPHPA   80 (227)
T ss_dssp             CBSCEECCTTSSTTEEEEEEECTTC-CCEEEEEEEETTEEEECGGGCCSEEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEEecccccccceeeeeecccccCCCCceEEEEEEEEeccc
Confidence            689999999999999999753    357899999999999999999865                               


Q ss_pred             ------CCCcee------------------eccC-cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWV------------------TIRG-KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l------------------~~~~-~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            +++|.|                  +... ....+..+.+.|||........+..++.+.+.+++.+.|...+..
T Consensus        81 ~~~~~~~~diall~l~~~i~~~~~v~picl~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~c~~~~~~  160 (227)
T d1fi8a_          81 YNSKTISNDIMLLKLKSKAKRSSAVKPLNLPRRNVKVKPGDVCYVAGWGKLGPMGKYSDTLQEVELTVQEDQKCESYLKN  160 (227)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCHHHHHHHTTT
T ss_pred             ccCccccchhhhhhccCceeeeeeEEEEEecccCcccCCCCEEEEEeeccccCCCCCCceeeEEEEEEEEchhhhhhhhc
Confidence                  112222                  1111 123467899999998877766778899999999999999987666


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ......++|+.........|.||+||||++.    ++|+||+|+|..|+  +.|++||||+.|++||+++|++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g~~~~--~~p~vyt~v~~y~~WI~~~i~~  227 (227)
T d1fi8a_         161 YFDKANEICAGDPKIKRASFRGDSGGPLVCK----KVAAGIVSYGQNDG--STPRAFTKVSTFLSWIKKTMKK  227 (227)
T ss_dssp             TCCTTTEEEESCTTSCCBCCTTCTTSEEEET----TEEEEEEEEEETTC--CSCEEEEEGGGGHHHHHHHHCC
T ss_pred             ccccceeeeeeeccccCCCcCCCcCCEEEEC----CEEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHHcC
Confidence            6677788888877777889999999999984    59999999998886  4699999999999999999974

>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=255.08  Aligned_cols=173  Identities=38%  Similarity=0.718  Sum_probs=137.8

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|..++|||+|+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 iigG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (254)
T d2bz6h1           1 IVGGKVCPKGECPWQVLLLVNGAQLCGGTLINTIWVVSAAHCFDKIKNWRNLIAVLGEHDLSEHDGDEQSRRVAQVIIPS   80 (254)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEECSSSEEEECGGGGTTCSCGGGEEEEESCCBTTCCCSCCEEEEEEEEEEET
T ss_pred             CCCCEECCCCCCCcEEEEEECCCEEEEEEEeCCCEEEECcccccCCCCcccceeeccceeeccccccceeeeeeeeeecc
Confidence            689999999999999999999999999999999999999999965                                   


Q ss_pred             -------CCCceeeccC----------------------cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 -------GLGIWVTIRG----------------------KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 -------~~~i~l~~~~----------------------~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                             .+||.|....                      .......+.+.|||............+.....+...+.|..
T Consensus        81 ~~~~~~~~~DiAll~L~~~v~~~~~i~picl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (254)
T d2bz6h1          81 TYVPGTTNHDIALLRLHQPVVLTDHVVPLCLPERTFSERTLAFVRFSLVSGWGQLLDRGATALELMVLNVPRLMTQDCLQ  160 (254)
T ss_dssp             TCCTTSCSSCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTGGGCCEEEEEESCBSSTTSCBCSBCEEEEEEEECHHHHHH
T ss_pred             cccccccccceeEEEecCcccccceEeeeecCccccccccccCCceEEEeccCccCCCCcccccceeeeecccchhhhhh
Confidence                   1223331111                      01134678899999887666666666666666666665443


Q ss_pred             hhc----CCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         183 TAY----ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       183 ~~~----~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ...    .......++|.....+....|.||+||||++..+++|+|+||+||+..|+..+.|++||||+.|++||+++|+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gdsGgPl~~~~~~~~~lvGi~S~g~~c~~~~~p~vytrv~~~~~WI~~~i~  240 (254)
T d2bz6h1         161 QSRKVGDSPNITEYMFCAGYSDGSKDSCKGDSGGPHATHYRGTWYLTGIVSWGQGCATVGHFGVYTRVSQYIEWLQKLMR  240 (254)
T ss_dssp             HSCCCTTCCCCCTTEEEESCSSSSCBCCGGGTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEEEGGGGHHHHHHHHT
T ss_pred             hhhcccccccccccceeeeccCCCcccccCccccceEEccCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHh
Confidence            321    2245667777766667789999999999999999999999999999999988899999999999999999997


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      .
T Consensus       241 ~  241 (254)
T d2bz6h1         241 S  241 (254)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Hepatocyte growth factor, HGF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-36  Score=255.27  Aligned_cols=171  Identities=30%  Similarity=0.588  Sum_probs=135.4

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++.. +|||||+|+++++|+|+||||+++||||||||+..                                   
T Consensus         1 ~~~g~~~~~-~~~w~vsi~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~   79 (234)
T d1si5h_           1 VVNGIPTRT-NIGWMVSLRYRNKHICGGSLIKESWVLTARQCFPSRDLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYG   79 (234)
T ss_dssp             CBSCEECSS-CCTTEEEEEESSSEEEEEEEEETTEEEEEGGGCSSSCGGGEEEEESCSBSSCSTTTTTCEEEEEEEEEEC
T ss_pred             CCCCEeCCC-CcCeEEEEEECCcEEEEEEEEeCCEEEECcCccCCCCCccceEEEEeecccccccceeEEEEeeccccCC
Confidence            689999966 59999999999999999999999999999999864                                   


Q ss_pred             --CCCceee------------------ccCcc-cCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhc-CCCC
Q psy8662         132 --GLGIWVT------------------IRGKS-FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY-ENRI  189 (260)
Q Consensus       132 --~~~i~l~------------------~~~~~-~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~-~~~i  189 (260)
                        .+||.|.                  ..... .....+.+.||+.... ......|+.+++.+++.+.|...+. ...+
T Consensus        80 ~~~~DIAll~L~~~v~~~~~v~picl~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  158 (234)
T d1si5h_          80 PEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGL-INYDGLLRVAHLYIMGNEKCSQHHRGKVTL  158 (234)
T ss_dssp             SSTTCEEEEEESSCCCCSSSCCCCBCCCTTCCCCTTCEEEEEESSCCCC-SSCCCBCEEEEEEEECGGGTCC-------C
T ss_pred             CcccceEEEeeccCccccccccccccccccccCCcceeEEEeccccccc-ccccceeEEEEeeccchhHhhhhhcccccc
Confidence              1123221                  11111 1244556666665443 2346679999999999999987543 3357


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .++++|+.......+.|.||+||||+++.+++|+|+||+|++..|+..+.|++||||+.|++||+++|+.
T Consensus       159 ~~~~~C~~~~~~~~~~c~gdsG~pl~~~~~~~~~l~Gi~s~g~~c~~~~~p~vyt~i~~~~~WI~~~i~~  228 (234)
T d1si5h_         159 NESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILT  228 (234)
T ss_dssp             CTTEEEEECSSSCCBCCTTCTTCEEEEECSSSEEEEEEECSCSCSSCTTCCEEEEEGGGGHHHHHHHHSS
T ss_pred             CCccEEEccCCcCCCCCcCccccceEEecCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHhhc
Confidence            8899999877777899999999999999999999999999999998888999999999999999999863

>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.1e-36  Score=253.62  Aligned_cols=172  Identities=36%  Similarity=0.724  Sum_probs=138.4

Q ss_pred             eeCCeeCCCCCCceEEEEEec-CeeeeeeEEEeCCEEEeccccccc----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK-KRFYCGATLINNLYVLTAAHCVHQ----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~-~~~~C~GtLIs~~~VLTAAhCv~~----------------------------------  131 (260)
                      |+||++|..++|||+|+|+.+ ..++|+||||+++||||||||+..                                  
T Consensus         1 i~~G~~~~~~e~Pw~v~i~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~   80 (240)
T d1autc_           1 LIDGKMTRRGDSPWQVVLLDSKKKLACGAVLIHPSWVLTAAHCMDESKKLLVRLGEYDLRRWEKWELDLDIKEVFVHPNY   80 (240)
T ss_dssp             CBSCEECCTTSCTTEEEEECTTSCEEEEEEEEETTEEEECGGGSSSCSCCEEEESCCBTTCCCTTCEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCCCCEEEEEECCCCEEEEEEEEeCCEEEECceeccCcccceeeccccccccccccceeeeeeccccceee
Confidence            689999999999999999875 478999999999999999999855                                  


Q ss_pred             -----CCCceeecc-----------------------CcccCCceEEEEeeeecCCCC-----CCCccceEEEEEeeChh
Q psy8662         132 -----GLGIWVTIR-----------------------GKSFSNKTGIVTGWGVQKQGG-----STSDTLLEVEVPILSNA  178 (260)
Q Consensus       132 -----~~~i~l~~~-----------------------~~~~~~~~~~v~Gwg~~~~~~-----~~~~~l~~~~v~vi~~~  178 (260)
                           .+||.|...                       .....+..+.+.|||......     .....++...+++++.+
T Consensus        81 ~~~~~~~DiAli~L~~~v~~~~~v~picL~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (240)
T d1autc_          81 SKSTTDNDIALLHLAQPATLSQTIVPICLPDSGLAERELNQAGQETLVTGWGYHSSREKEAKRNRTFVLNFIKIPVVPHN  160 (240)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCBCCCHHHHHHTTTSTTCEEEEEECCCCCSCCSCCCSSCSSBCEEEEEEEECHH
T ss_pred             eccccccceeEEEeCCcccCCcccccceeccCcccccccccCCCeEEEEeeccccCCCcccccccceeeecceeeEEeeh
Confidence                 112222110                       112245689999999765432     23456788899999999


Q ss_pred             hHhhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         179 ECKKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       179 ~C~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .|... .........+|........+.|.||+|+||++..+++|+|+||+|||..|+..+.|++||||+.|++||+++++
T Consensus       161 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gd~G~pl~~~~~~~~~l~Gi~s~g~~c~~~~~p~vftrv~~y~~WI~~~i~  239 (240)
T d1autc_         161 ECSEV-MSNMVSENMLCAGILGDRQDACEGDSGGPMVASFHGTWFLVGLVSWGEGCGLLHNYGVYTKVSRYLDWIHGHIR  239 (240)
T ss_dssp             HHHHH-CSSCCCTTEEEECCTTCCCBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSCTTCCEEEECGGGTHHHHHHHHC
T ss_pred             hhhhh-cccccccceeeeccccccCCCcCCccCceeEEcCCCCEEEEEEEEeCCCCCCCCCCeEEEEHHHHHHHHHHHhC
Confidence            99885 34445566677766666688999999999999999999999999999999888889999999999999999998


Q ss_pred             c
Q psy8662         259 D  259 (260)
Q Consensus       259 ~  259 (260)
                      |
T Consensus       240 ~  240 (240)
T d1autc_         240 D  240 (240)
T ss_dssp             -
T ss_pred             C
Confidence            6

>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=2.6e-36  Score=253.51  Aligned_cols=172  Identities=34%  Similarity=0.632  Sum_probs=138.1

Q ss_pred             eeCCeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||++|+.++|||+|+|.+.    ..++|+||||+++||||||||+..                               
T Consensus         1 i~~G~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~   80 (240)
T d1gvkb_           1 VVGGTEAQRNSWPSQISLQYRSGSSWAHTCGGTLIRQNWVMTAAHCVDRELTFRVVVGEHNLNQNNGTEQYVGVQKIVVH   80 (240)
T ss_dssp             CBTCEECCTTSCTTEEEEEEEETTEEEEEEEEEEEETTEEEECGGGGCSCCCEEEEESCSBTTSCCSCCEEEEEEEEEEC
T ss_pred             CCCCEECCCCCCCEEEEEEEecCCccceEEEEEEEeCCEEEECcccccccCCceEEeeeeeccccccccccccccceeEE
Confidence            689999999999999999763    246899999999999999999865                               


Q ss_pred             ----------CCCceeecc-------------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWVTIR-------------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l~~~-------------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                ++++.|...                   ..........++||+...........|+...+++++.+.|..
T Consensus        81 ~~~~~~~~~~~~diAll~l~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  160 (240)
T d1gvkb_          81 PYWNTDDVAAGYDIALLRLAQSVTLNSYVQLGVLPRAGTILANNSPCYITGWGLTRTNGQLAQTLQQAYLPTVDYAICSS  160 (240)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCCEEEEESCBSSTTCCBCSBCEEEECCEECHHHHTS
T ss_pred             EeecccccccCcceeeecccCcccccccccceeeccCccccccccceeEeccccccccccccceeeEEEEEEEcHHHhcc
Confidence                      112222111                   111134567788998877666667789999999999999977


Q ss_pred             hhc-CCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC--CCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         183 TAY-ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG--CAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       183 ~~~-~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~--C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ... .....+.++|+.... ..+.|.||+|+||++..+++|+|+||+||+..  |+..+.|+|||||+.|++||+++|+.
T Consensus       161 ~~~~~~~~~~~~~c~~~~~-~~~~c~gDsG~pl~~~~~~~~~lvGI~S~~~~~~c~~~~~p~vyt~v~~~~~WI~~~i~~  239 (240)
T d1gvkb_         161 SSYWGSTVKNSMVCAGGDG-VRSGCQGDSGGPLHCLVNGQYAVHGVTSFVSRLGCNVTRKPTVFTRVSAYISWINNVIAS  239 (240)
T ss_dssp             TTTTGGGCCTTEEEECCSS-SCBCCTTCTTCEEEEEETTEEEEEEEEEECBTTBSSCTTCCEEEEEGGGSHHHHHHHHHH
T ss_pred             eeccCCccCCceEEecCCC-CCccccCccccceEEEECCEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHHHHhc
Confidence            543 235678899997544 47899999999999999999999999999864  66667899999999999999999975

>d1bioa_ b.47.1.2 (A:) Factor D {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=250.45  Aligned_cols=167  Identities=31%  Similarity=0.628  Sum_probs=136.8

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|..++|||+|+|+..+.++|+||||+++||||||||+..                                   
T Consensus         1 I~gG~~~~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~i~~~~~   80 (228)
T d1bioa_           1 ILGGREAEAHARPYMASVQLNGAHLCGGVLVAEQWVLSAAHCLEDAADGKVQVLLGAHSLSQPEPSKRLYDVLRAVPHPD   80 (228)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGGGGCSSSCEEEEESCSBSSSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEEeCCEEEECceeeeccccceeeeeccccccccCCcceeeccceeeeeeec
Confidence            789999999999999999999999999999999999999999964                                   


Q ss_pred             ------CCCceeec-------------------cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWVTI-------------------RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l~~-------------------~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            ++++.|..                   ......+..+.+.|||.....+.....++...+++++.++|......
T Consensus        81 y~~~~~~~diAll~l~~~~~~~~~v~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  160 (228)
T d1bioa_          81 SQPDTIDHDLLLLQLSEKATLGPAVRPLPWQRVDRDVAPGTLCDVAGWGIVNHAGRRPDSLQHVLLPVLDRATCNRRTHH  160 (228)
T ss_dssp             CCTTCCTTCCEEEEESSCCCCBTTBCCCCBCCSCCCCCTTCEEEEEESSCCSTTCCCCSBCEEEEEEEECHHHHHSTTTT
T ss_pred             ccCCCcccceehhhccccceeeeEEeeecccccccccccCceEEEecceeecCCCCCCCcceEEEEEEeCHHHHhhhhcc
Confidence                  12233211                   11122466788999998877777778899999999999999887655


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .......+|.... ...+.|.||+|+||+++    |+|+||+||+. .|+..+.|++||||+.|++||+++|+
T Consensus       161 ~~~~~~~~~~~~~-~~~~~~~gdsG~Pl~~~----~~LvGi~S~g~~~c~~~~~p~v~t~v~~~~~WI~~~i~  228 (228)
T d1bioa_         161 DGAITERLMCAES-NRRDSCKGDSGGPLVCG----GVLEGVVTSGSRVCGNRKKPGIYTRVASYAAWIDSVLA  228 (228)
T ss_dssp             TTCCCTTEEEECC-SSCBCCTTTTTCEEEET----TEEEEEECCSCCCSSCTTSCEEEEEGGGGHHHHHHHHC
T ss_pred             cccccccceeecc-cCCCcccCCcCccEEEc----CEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHHhC
Confidence            5556666777544 34789999999999984    59999999985 58777889999999999999999874

>d1os8a_ b.47.1.1 (A:) Trypsin {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Trypsin
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=100.00  E-value=3.6e-36  Score=252.04  Aligned_cols=169  Identities=37%  Similarity=0.720  Sum_probs=138.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||+.|.+++|||+|+|.    ++|+||||+++||||||||+..                                   
T Consensus         1 ~~gG~~~~~~~~Pw~v~l~----~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~v~~g~~~~~~~~~~~i~~~~i~~~~~~   76 (223)
T d1os8a_           1 VVGGTRAAQGEFPFMVRLS----MGCGGALYAQDIVLTAAHCVSGSGNNTSITATGGVVDLQSSSAVKVRSTKVLQAPGY   76 (223)
T ss_dssp             CBSCEECCTTSSTTEEEET----TTEEEEEEETTEEEECGGGSSCSEECCCCEEEESCSBTTCTTCEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCCCcEEEEe----ccEeEEEEeCCEEEEChhhccCCCCcceeeeccccccccccccccceeeeeeecccc
Confidence            6899999999999999994    6799999999999999999854                                   


Q ss_pred             ---CCCceee-------------ccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEE
Q psy8662         132 ---GLGIWVT-------------IRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLC  195 (260)
Q Consensus       132 ---~~~i~l~-------------~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~C  195 (260)
                         ++||.|.             .......+..+.+.||+...........++...+.+++.++|+..+........++|
T Consensus        77 ~~~~~DIAllkL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~  156 (223)
T d1os8a_          77 NGTGKDWALIKLAQPINQPTLKIATTTAYNQGTFTVAGWGANREGGSQQRYLLKANVPFVSDAACRSAYGNELVANEEIC  156 (223)
T ss_dssp             SSSSCCCEEEEESSCCCSCCCEECCSSTTSSSEEEEEESSCSSTTCCCCSBCEEEEEEEECHHHHHHHHGGGSCTTTEEE
T ss_pred             cccceeeeeeeeeeeeecccccccccccccccceEEeeccccccccccccccccceeeEeCHHHhhhhhcCCCccCccee
Confidence               1233331             112234577889999988776666678899999999999999887655555556655


Q ss_pred             eec-CCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         196 AGY-PKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       196 a~~-~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ... ..+..+.|.+|+|+||++.+ .++|+|+||+||+..|+..+.|++|+||++|++||+++|+.
T Consensus       157 ~~~~~~~~~~~c~~~~G~pl~~~~~~~~~~L~Gi~s~~~~c~~~~~p~vft~V~~y~~WI~~~~k~  222 (223)
T d1os8a_         157 AGYPDTGGVDTCQGDSGGPMFRKDNADEWIQVGIVSWGYGCARPGYPGVYTEVSTFASAIASAART  222 (223)
T ss_dssp             ESCTTTCCCBCCTTCTTCEEEEECTTSCEEEEEEEEECSSSSCTTCCEEEEEHHHHHHHHHHHHHT
T ss_pred             eeccccCCcCccccccccceEEecCCCeEEEEEEEEeCCCCCCCCCCEEEEEHHHHHHHHHHHHhh
Confidence            543 44567889999999999875 47999999999999999888999999999999999999863

>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.9e-36  Score=253.41  Aligned_cols=170  Identities=35%  Similarity=0.692  Sum_probs=135.7

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|.+++|||||+|+  ++++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~~~~g~~Pw~v~i~--~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~i~~hp~   78 (242)
T d1q3xa1           1 IYGGQKAKPGDFPWQVLIL--GGTTAAGALLYDNWVLTAAHAVYEQKHDASALDIRMGTLKRLSPHYTQAWSEAVFIHEG   78 (242)
T ss_dssp             CBSCEECCTTSSTTEEEEC--SSSSEEEEEETTTEEEECHHHHHHHHTTTCCCEEEESCSBTTCSCSEEEEEEEEEECTT
T ss_pred             CCCCEECCCCCcCcEEEEc--CCCEEEEEEEcCCEEEEChhhccCCCCCcceEEEEeeeeeeccccccccceeeeEEeec
Confidence            7899999999999999996  457899999999999999999843                                   


Q ss_pred             -------CCCceeeccCc---------------------ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhh
Q psy8662         132 -------GLGIWVTIRGK---------------------SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKT  183 (260)
Q Consensus       132 -------~~~i~l~~~~~---------------------~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~  183 (260)
                             ++||.|.....                     ...+......||+....+ .....|+.+++++++.++|++.
T Consensus        79 y~~~~~~~~DiAll~L~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~l~~~~~~~~~~~~C~~~  157 (242)
T d1q3xa1          79 YTHDAGFDNDIALIKLNNKVVINSNITPICLPRKEAESFMRTDDIGTASGWGLTQRG-FLARNLMYVDIPIVDHQKCTAA  157 (242)
T ss_dssp             CCTTSCCTTCCEEEEESSCCCCBTTBCCCBCCCGGGGGGSSTTCEEEEEESSCCTTS-SCCSBCEEEEEEEECHHHHHHH
T ss_pred             cccccccCccccccccCCCccccccEEEEeccccccccccccceeeeeeeccccccC-ccccceeeeeccccCHHHHHhh
Confidence                   12233311110                     112455667777765433 3467899999999999999876


Q ss_pred             hc-----CCCCCCCeEEeecCCCCCCCCcCCCCCceEEee--CCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHH
Q psy8662         184 AY-----ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN--ETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       184 ~~-----~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~--~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      +.     ...+...++|++......+.|.+|+||||++..  +++|+|+||+|||. .|+..+.|++||||+.|++||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~c~gdsGgpl~~~~~~~~~~~l~Gi~S~g~~~c~~~~~p~vft~v~~~~~WI~~  237 (242)
T d1q3xa1         158 YEKPPYPRGSVTANMLCAGLESGGKDSCRGDSGGALVFLDSETERWFVGGIVSWGSMNCGEAGQYGVYTKVINYIPWIEN  237 (242)
T ss_dssp             TSSTTSCTTCSCTTEEEECCSSCCSBCCTTCTTCEEEEEETTTTEEEEEEEEEECCSSTTCTTCCEEEEEGGGGHHHHHH
T ss_pred             hhcccccCceeccceeeeeccCCCccccccccccceEEeeCCCCeEEEEEEEEeCCCCCCCCCCCEEEEEHHHhHHHHHH
Confidence            42     224677889998777778899999999999865  48999999999986 68888899999999999999999


Q ss_pred             Hhhc
Q psy8662         256 NTID  259 (260)
Q Consensus       256 ~~~~  259 (260)
                      +++|
T Consensus       238 ~v~~  241 (242)
T d1q3xa1         238 IISD  241 (242)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            9986

>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Heparin binding protein, HBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-36  Score=249.77  Aligned_cols=160  Identities=28%  Similarity=0.530  Sum_probs=131.4

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||+|+|+.+++++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (225)
T d1a7sa_           1 IVGGRKARPRQFPFLASIQNQGRHFCGGALIHARFVMTAASCFQSQNPGVSTVVLGAYDLRRRERQSRQTFSISSMSENG   80 (225)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGC----CCSEEEEESCSSTTSCCTTTCEEEEEEEEECSS
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEEcCCEEEECeeeeeeccccceeeEEeeeecccccccccceeeeeeeeeee
Confidence            789999999999999999999999999999999999999999865                                   


Q ss_pred             ------CCCceeec-------------------cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWVTI-------------------RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l~~-------------------~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            .+||.|..                   ......+..+.++|||...........++...+.+++.+.|...   
T Consensus        81 ~~~~~~~~DIAll~L~~~i~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~---  157 (225)
T d1a7sa_          81 YDPQQNLNDLMLLQLDREANLTSSVTILPLPLQNATVEAGTRCQVAGWGSQRSGGRLSRFPRFVNVTVTPEDQCRPN---  157 (225)
T ss_dssp             CBTTTTBSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSTTCCCCSSCEEEEEEECCGGGSCTT---
T ss_pred             ccccccccccchhhcCCcccccccceeEEeeccccccCCCceeEeccccccccccccccceeEEEEEEeehhhcccc---
Confidence                  12233311                   11122467899999998877777778899999999999999653   


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhcC
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTIDA  260 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~a  260 (260)
                            ..|+.......+.|.||+||||+++    |+|+||.||+..|+. +.|++||||++|++||+++|+++
T Consensus       158 ------~~~~~~~~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~~~~~c~-~~p~v~t~v~~y~~WI~~~i~~~  220 (225)
T d1a7sa_         158 ------NVCTGVLTRRGGICNGDGGTPLVCE----GLAHGVASFSLGPCG-RGPDFFTRVALFRDWIDGVLNNP  220 (225)
T ss_dssp             ------EEEEECSSSSCBCCTTCTTCEEEET----TEEEEEEEEECSSTT-SSCEEEEEGGGGHHHHHHHHHSC
T ss_pred             ------cceeeecccccccccCCCCCCEEEe----CEEEEEEEECCCCCC-CCCCEEEEHHHHHHHHHHHHCCC
Confidence                  4666666667889999999999984    589999999987654 45999999999999999999863

>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Cathepsin G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-36  Score=248.81  Aligned_cols=165  Identities=30%  Similarity=0.557  Sum_probs=134.1

Q ss_pred             eeCCeeCCCCCCceEEEEEec---CeeeeeeEEEeCCEEEecccccccC-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVHQG-------------------------------  132 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~---~~~~C~GtLIs~~~VLTAAhCv~~~-------------------------------  132 (260)
                      |+||++|..+||||+|.|+..   +.++|+||||+++||||||||+...                               
T Consensus         1 IvgG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtlI~~~~VLTaAhC~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~   80 (224)
T d1t32a1           1 IIGGRESRPHSRPYMAYLQIQSPAGQSRCGGFLVREDFVLTAAHCWGSNINVTLGAHNIQRRENTQQHITARRAIRHPQY   80 (224)
T ss_dssp             CBSCEECCTTSSTTEEEEEESSSTTSCEEEEEEEETTEEEECGGGCCSCEEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCCEEEEEEEEcCCEEEEeEEcccccccceeeeeeeeccccceeeecceeEEEeecc
Confidence            789999999999999999763   4689999999999999999998651                               


Q ss_pred             ------CCcee------------------eccC-cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         133 ------LGIWV------------------TIRG-KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       133 ------~~i~l------------------~~~~-~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                            +++.|                  +... ....+..+...|||..... .....|+++.+.+++.++|++. +..
T Consensus        81 ~~~~~~~diaL~~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~g~~~~~-~~~~~l~~~~~~~~~~~~C~~~-~~~  158 (224)
T d1t32a1          81 NQRTIQNDIMLLQLSRRVRRNRNVNPVALPRAQEGLRPGTLCTVAGWGRVSMR-RGTDTLREVQLRVQRDRQCLRI-FGS  158 (224)
T ss_dssp             BTTTTBTCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESCCSSSS-CCCSBCEEEEEEBCCHHHHHHH-STT
T ss_pred             cccccccceeEEeeccccccCcccCccccccccccCCCCCEEEEecccccccC-CCcceeeeeeeeecCHHHHHhh-cCc
Confidence                  11222                  1111 1124567888999876543 4456799999999999999885 556


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+.++++|+.......+.|.||+||||++.    ++|+||+|||..|+.  .|++||||+.|++||+++|+.
T Consensus       159 ~~~~~~~c~~~~~~~~~~c~gdsGgPl~~~----~~l~Gi~S~g~~~~~--~p~vyt~v~~y~~WI~~~i~~  224 (224)
T d1t32a1         159 YDPRRQICVGDRRERKAAFKGDSGGPLLCN----NVAHGIVSYGKSSGV--PPEVFTRVSSFLPWIRTTMRS  224 (224)
T ss_dssp             CCTTTEEEECCTTSSCBCCTTCTTCEEEET----TEEEEEEEECCTTCC--SCEEEEEGGGSHHHHHHHHCC
T ss_pred             ccccccceeecccccccccccCcCCeEEEc----CEEEEEEEEcCCCCC--CCcEEEEHHHhHHHHHHHHcC
Confidence            678899999877777899999999999984    389999999998875  399999999999999999873

>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: beta-Tryptase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.8e-36  Score=252.26  Aligned_cols=171  Identities=42%  Similarity=0.719  Sum_probs=136.2

Q ss_pred             eeCCeeCCCCCCceEEEEEecC---eeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~---~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||++|..+||||+|+|.+.+   .++|+||||+++||||||||+..                                
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~h   80 (243)
T d2fpza1           1 IVGGQEAPRSKWPWQVSLRVHGPYWMHFCGGSLIHPQWVLTAAHCVGPDVKDLAALRVQLREQHLYYQDQLLPVSRIIVH   80 (243)
T ss_dssp             CBSCEECCTTSCTTEEEEEECSSSCEEEEEEEEEETTEEEECHHHHCSBCCCGGGEEEECCCSBTTTTCCCEEEEEEEEC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCcccEEEEEEEEeCCEEEECceeccCCCCcceeEEEEeeecccccccEEEeeeeeecc
Confidence            6899999999999999998743   56899999999999999999854                                


Q ss_pred             --------CCCcee------------------ecc-CcccCCceEEEEeeeecCCCC--CCCccceEEEEEeeChhhHhh
Q psy8662         132 --------GLGIWV------------------TIR-GKSFSNKTGIVTGWGVQKQGG--STSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 --------~~~i~l------------------~~~-~~~~~~~~~~v~Gwg~~~~~~--~~~~~l~~~~v~vi~~~~C~~  182 (260)
                              +++|.+                  +.. .....+....+.+||....+.  ..+..|+.+.+++++.++|+.
T Consensus        81 p~~~~~~~~~diAli~L~~~~~~~~~v~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~  160 (243)
T d2fpza1          81 PQFYTAQIGADIALLELEEPVKVSSHVHTVTLPPASETFPPGMPCWVTGWGDVDNDERLPPPFPLKQVKVPIMENHICDA  160 (243)
T ss_dssp             TTCSCTTTSCCCEEEEESSCCCCCSSSCCCBCCCTTCCCCTTCEEEEEESSCSBTTBCCCTTCBCEEEEEEEECHHHHHH
T ss_pred             ccccccccccchhhhcccCccccceeEEEeecCchhhccCCCceeEEEecccccCCCcCCCCcEeEEEEEeecCHHHhhh
Confidence                    112222                  111 112245678899998776543  235678999999999999987


Q ss_pred             hhcCC--------CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHH
Q psy8662         183 TAYEN--------RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIK  254 (260)
Q Consensus       183 ~~~~~--------~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~  254 (260)
                      .+...        .+...++|.+  ......|.||+||||++..+++|+|+||+|++..|+..+.|.+||||++|++||+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~gdsGgpl~~~~~~~~~L~Gi~s~~~~~~~~~~p~v~t~v~~y~~WI~  238 (243)
T d2fpza1         161 KYHLGAYTGDDVRIVRDDMLCAG--NTRRDSCQGDSGGPLVCKVNGTWLQAGVVSWGEGCAQPNRPGIYTRVTYYLDWIH  238 (243)
T ss_dssp             HHHTTBCSCTTSCSSCTTEEEEC--CSSSBCCTTCTTCEEEEEETTEEEEEEEEEECSSSSBTTBCEEEEEGGGGHHHHT
T ss_pred             hhhcccccCCccceeeeeeEecC--CCCCCCccCCCCCeEEEeeCCEEEEEEEEEECCCCCCCCCCEEEEEHHHHHHHHH
Confidence            64211        2345567765  3457899999999999999999999999999999988889999999999999999


Q ss_pred             HHhhc
Q psy8662         255 NNTID  259 (260)
Q Consensus       255 ~~~~~  259 (260)
                      +++++
T Consensus       239 ~~i~~  243 (243)
T d2fpza1         239 HYVPK  243 (243)
T ss_dssp             TTSCC
T ss_pred             HHhCC
Confidence            99874

>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Venom serine protease
species: Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]

Probab=100.00  E-value=3.5e-35  Score=246.89  Aligned_cols=168  Identities=32%  Similarity=0.592  Sum_probs=137.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|..+||||+|+|+.+++++|+|+||+++||||||||+..                                   
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~C~G~LIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (234)
T d1op0a_           1 VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTDFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN   80 (234)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCEEEESCSCSSSCCTTCEEECEEEEEECTTCCTT
T ss_pred             CCCCEECCCCCcCcEEEEEECCcEEEEEEEEcCCEEEECceeCCCCCccccceeeccccCCcceeeeeeeeccccccccc
Confidence            789999999999999999999999999999999999999999865                                   


Q ss_pred             ---CCCcee------------------eccCcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCCC
Q psy8662         132 ---GLGIWV------------------TIRGKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRI  189 (260)
Q Consensus       132 ---~~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~i  189 (260)
                         ..+|.|                  +.. ....+..+.++||+...... .....++...+.+++.++|...+.....
T Consensus        81 ~~~~~DiaLl~L~~~v~~~~~i~picl~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~  159 (234)
T d1op0a_          81 EVLDKDIMLIKLDKPISNSKHIAPLSLPSS-PPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLA  159 (234)
T ss_dssp             CTTSSCCEEEEESSCCCCBTTBCCCCCCSS-CCCTTCEEEEEESSCSSSSSCCCCSSCEEEEEEEECHHHHHHHCTTCCT
T ss_pred             cccchhhhhhhcCCceeccceeeccccccc-CcccceEEEEeeeccccccccccccccccccceEechHHhcccccCcce
Confidence               112222                  211 22356789999998665433 4456789999999999999986544445


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ...++|.....+..+.|.||+|+||++.    |+|+||+||+. .|+....|++||||+.|++||+++|+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~g~~G~Pl~~~----~~l~Gi~S~g~~~c~~~~~p~vft~v~~y~~WI~~~i~~  226 (234)
T d1op0a_         160 EYRTLCAGIVQGGKDTCGGDSGGPLICN----GQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAG  226 (234)
T ss_dssp             TSCEEEEECTTCCCBCCTTCTTCEEEET----TEEEEEEEECCSSTTCTTSCEEEEESGGGHHHHHHHHHT
T ss_pred             eeeeeeecccccccccccCCCCceEEEc----CEEEEEEEEcCCCCCCCCCCeEEEEHHHHHHHHHHHHhh
Confidence            5566777666677889999999999985    48999999985 688878899999999999999999974

>d1azza_ b.47.1.2 (A:) Crab collagenase {Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Crab collagenase
species: Atlantic sand fiddler crab (Uca pugilator) [TaxId: 6772]

Probab=100.00  E-value=7.2e-36  Score=250.09  Aligned_cols=166  Identities=35%  Similarity=0.651  Sum_probs=130.8

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||+|+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~a~~~~~Pw~V~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~g~~~~~~~~~~~~~~~v~~i~~~~~y~   80 (226)
T d1azza_           1 IVGGVEAVPNSWPHQAALFIDDMYFCGGSLISPEWILTAAHCMDGAGFVDVVLGAHNIREDEATQVTIQSTDFTVHENYN   80 (226)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTTEEEEEEEEETTEEEECHHHHTTCSCEEEEESCSBSSSCCTTCEEEEECCEEECTTCB
T ss_pred             CCCCEECCCCCCCcEEEEEECCcEEEEEEEeeCCEEEEChhhccCCcceEEEeccceeccCCcceEEEEeeeeeeccccc
Confidence            689999999999999999999999999999999999999999854                                   


Q ss_pred             ----CCCceeecc-----------------CcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhHhhhhcCCCC
Q psy8662         132 ----GLGIWVTIR-----------------GKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAECKKTAYENRI  189 (260)
Q Consensus       132 ----~~~i~l~~~-----------------~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C~~~~~~~~i  189 (260)
                          ++++.|...                 ........+.++|||...... .....|++..+++++.++|+..+ ... 
T Consensus        81 ~~~~~~diAll~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~-~~~-  158 (226)
T d1azza_          81 SFVISNDIAVIRLPVPVTLTAAIATVGLPSTDVGVGTVVTPTGWGLPSDSALGISDVLRQVDVPIMSNADCDAVY-GIV-  158 (226)
T ss_dssp             TTTTBSCCEEEECSSCCCCCSSSCCCBCCSSCCCTTCEEEEEESSCSSTTCSSSCSBCEECCEEEECHHHHHHHH-SCC-
T ss_pred             cccccchhhhhhcCCccceeeccccccccccccccccceeeecccccCCCcCccccEeEEEEEEEEeHHHhhhhh-Ccc-
Confidence                122332111                 112246778999999876543 34567999999999999998864 333 


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCC-CCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCA-QENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~-~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ...++|... ....+.|.||+||||+++    |+|+||+|++..|+ ..+.|++||||+.|++||+++|+-
T Consensus       159 ~~~~~~~~~-~~~~~~c~gdsG~Pl~~~----~~l~Gi~S~g~~~~~~~~~p~v~t~v~~y~~WI~~~~g~  224 (226)
T d1azza_         159 TDGNICIDS-TGGKGTCNGDSGGPLNYN----GLTYGITSFGAAAGCEAGYPDAFTRVTYFLDWIQTQTGI  224 (226)
T ss_dssp             CTTEEEECC-TTTCBCCTTCTTCEEEET----TEEEEEEEEEETTCTTSCCCEEEEESGGGHHHHHHHHCC
T ss_pred             cccceeccc-cCCCccccCCcCCCEEEc----CEEEEEEEEeCCCCCCCCCCEEEEEHHHhHHHHHHHhCC
Confidence            344445433 345789999999999874    58999999998764 566899999999999999999873

>d1eufa_ b.47.1.2 (A:) Duodenase {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Duodenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.4e-35  Score=244.71  Aligned_cols=165  Identities=35%  Similarity=0.623  Sum_probs=133.4

Q ss_pred             eeCCeeCCCCCCceEEEEEec---CeeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~---~~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||++|..+||||+|+|.+.   ..++|+||||+++||||||||+..                                
T Consensus         1 i~gG~~a~~~e~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~~hp~~   80 (224)
T d1eufa_           1 IIGGHEAKPHSRPYMAFLLFKTSGKSHICGGFLVREDFVLTAAHCLGSSINVTLGAHNIMERERTQQVIPVRRPIPHPDY   80 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEESSSSEEEEEEEEEETTEEEECGGGCCEEEEEEESCSBTTSCCTTCEEEEEEEEEECTTC
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCcEEEEEEEEcCCEEEeeceecccccceeeeeeeecccCCCcEEEEEEEEEECCcc
Confidence            789999999999999999763   367899999999999999999854                                


Q ss_pred             -----CCCceeecc-------------------CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWVTIR-------------------GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l~~~-------------------~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+||.|...                   .....+..+.++|||.+.........++...+.+++.++|+..+ ..
T Consensus        81 ~~~~~~~DiAll~L~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~C~~~~-~~  159 (224)
T d1eufa_          81 NDETLANDIMLLKLTRKADITDKVSPINLPRSLAEVKPGMMCSVAGWGRLGVNMPSTDKLQEVDLEVQSEEKCIARF-KN  159 (224)
T ss_dssp             CTTTCTTCCEEEEESSCCCCCSSCCCCCCCCTTCCCCTTCEEEEEESCBSSTTCCBCSBCEEEEEEBCCTHHHHTTC-TT
T ss_pred             ccccccccceeeeccceeEEeeeEeeeeeecccccccCCceEEEecccceeccccccccceeeeeccCCHHHHHHHh-cc
Confidence                 233443211                   11234578899999998877777788999999999999999863 33


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      .....++|........+.|.+|+||||+++    ++|+||+|+|.+|+  +.|.+||||+.|++||+++|+
T Consensus       160 ~~~~~~~~~~~~~~~~~~c~~dsGgpl~~~----~~l~Gi~s~g~~~~--~~p~vft~V~~y~~WI~~~ik  224 (224)
T d1eufa_         160 YIPFTQICAGDPSKRKNSFSGDSGGPLVCN----GVAQGIVSYGRNDG--TTPDVYTRISSFLSWIHSTMR  224 (224)
T ss_dssp             CCTTTEEEESCTTSCCBCCTTCTTCEEEET----TEEEEEEEECCTTC--CSCEEEEEGGGTHHHHHHHTC
T ss_pred             ccccceeeeeccccccccccCCCCCeEEEc----CEEEEEEEEcCCCC--CCCeEEEEHHHHHHHHHHHhC
Confidence            445556666555556889999999999985    48999999998886  469999999999999999986

>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-35  Score=245.37  Aligned_cols=158  Identities=31%  Similarity=0.626  Sum_probs=128.1

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||++|..++|||+|+|+.++.++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~C~G~LIs~~~VLTaAhC~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (218)
T d2z7fe1           1 IVGGRRARPHAWPFMVSLQLRGGHFCGATLIAPNFVMSAAHCVANVNVRAVRVVLGAHNLSRREPTRQVFAVQRIFENGY   80 (218)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECHHHHTTSCGGGCEEEESCSBTTSCCTTCEEEEEEEEEESCC
T ss_pred             CCCCEECCCCCCCcEEEEEECCCeEEEEEEEeCCEEEECeEecccccccceeeeeeeccccccccceeeeeeeeEeeecc
Confidence            689999999999999999999999999999999999999999864                                   


Q ss_pred             -----CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+++.|                  +.... ......+.++||+...........|+.+++++.+ +.|+.     
T Consensus        81 ~~~~~~~diall~l~~~~~~~~~~~pi~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~-~~c~~-----  154 (218)
T d2z7fe1          81 DPVNLLNDIVILQLNGSATINANVQVAQLPAQGRRLGNGVQCLAMGWGLLGRNRGIASVLQELNVTVVT-SLCRR-----  154 (218)
T ss_dssp             BTTTTBSCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCEEEEEESSBCSSSCCBCSBCEEEEEEEEC-TTCCT-----
T ss_pred             ccccccceEEEeeccccceeeeeeeeeeeccCccccCCCcEEEEeccceeecccccccceeEEEecccc-cccce-----
Confidence                 111222                  22222 1245678899999887766667789999998887 34643     


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                          .++|+.......+.|.||+||||+++    |+|+||+||+. +|+..+.|++||||++|++||+++++
T Consensus       155 ----~~~~~~~~~~~~~~C~gdsG~Pl~~~----~~l~GI~s~~~~~c~~~~~p~vft~v~~~~~WI~~~i~  218 (218)
T d2z7fe1         155 ----SNVCTLVRGRQAGVCFGDSGSPLVCN----GLIHGIASFVRGGCASGLYPDAFAPVAQFVNWIDSIIQ  218 (218)
T ss_dssp             ----TSEEEECTTSCCBCCTTCTTCEEEET----TEEEEEEEEESSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             ----eeeeeeecCcccCccccccCCCEEEC----CEEEEEEEEecCCCCCCCcCEEEEEhHHhHHHHHHHhC
Confidence                36777666666789999999999985    48999999974 68877889999999999999999985

>d1gvza_ b.47.1.2 (A:) Prostate specific antigen (PSA kallikrein) {Horse (Equus caballus) [TaxId: 9796]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Prostate specific antigen (PSA kallikrein)
species: Horse (Equus caballus) [TaxId: 9796]

Probab=100.00  E-value=1.2e-35  Score=249.61  Aligned_cols=168  Identities=32%  Similarity=0.549  Sum_probs=136.7

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.++..+||||+|+|++++.++|+||||+++||||||||+..                                   
T Consensus         1 i~gG~~~~~~e~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (237)
T d1gvza_           1 IIGGWECEKHSKPWQVAVYHQGHFQCGGVLVHPQWVLTAAHCMSDDYQIWLGRHNLSKDEDTAQFHQVSDSFLDPQFDLS   80 (237)
T ss_dssp             CBSCEECCTTSSTTEEEEEETTEEEEEEEEEETTEEEECGGGCCSSCEEEESCSBTTSCCTTCEEECEEEEEECTTSCGG
T ss_pred             CCCCEECCCCCCCcEEEEEECCeEEEEEEEEeCCEEEeChhhccCCCceeEeeeeeccccCcceeeeeeeEEeeeeeeee
Confidence            689999999999999999999999999999999999999999854                                   


Q ss_pred             -------------CCCceeec-----------------cCcccCCceEEEEeeeecCCCC-CCCccceEEEEEeeChhhH
Q psy8662         132 -------------GLGIWVTI-----------------RGKSFSNKTGIVTGWGVQKQGG-STSDTLLEVEVPILSNAEC  180 (260)
Q Consensus       132 -------------~~~i~l~~-----------------~~~~~~~~~~~v~Gwg~~~~~~-~~~~~l~~~~v~vi~~~~C  180 (260)
                                   .+||.|..                 ......+..+.+.|||...... ..+..|+++.+++++.+.|
T Consensus        81 ~~~~~~~~~~~~~~~Diali~L~~pv~~~~~v~p~~l~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~C  160 (237)
T d1gvza_          81 LLKKKYLRPYDDISHDLMLLRLAQPARITDAVKILDLPTQEPKLGSTCYTSGWGLISTFTNRGSGTLQCVELRLQSNEKC  160 (237)
T ss_dssp             GGGCSSCCTTSCCTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEEEECSCTTTCSEEEEEEEEEEEEECGGGG
T ss_pred             eeecccccCccccccceEEEEECCceecccccccccccccccccceeEEEEeeeeeccccccccceeeEEEEEeecHHHH
Confidence                         12223211                 1112346788999999765433 3456799999999999999


Q ss_pred             hhhhcCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         181 KKTAYENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       181 ~~~~~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      +.. ++..+.+.++|..........|.||+||||+++    |+|+||+||+. .|+..+.|.+||||++|++||+++|++
T Consensus       161 ~~~-~~~~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~----~~l~Gv~s~g~~~c~~~~~p~v~t~v~~y~~WI~~~i~~  235 (237)
T d1gvza_         161 ARA-YPEKMTEFVLCATHRDDSGSICLGDSGGALICD----GVFQGITSWGYSECADFNDNFVFTKVMPHKKWIKETIEK  235 (237)
T ss_dssp             CSS-CGGGCCTTEEEEECSSTTCEECGGGTTCEEEET----TEEEEEECCCSSSCEETTTSCCEEESGGGHHHHHHHHHH
T ss_pred             Hhh-cccccccccccceecccccccccCCCCCcEEEc----CEEEEEEEeccCCCCCCCCCeEEEEHHHHHHHHHHHHHh
Confidence            886 444556677887766677889999999999985    49999999986 476667899999999999999999974

>d3rp2a_ b.47.1.2 (A:) Chymase II (mast cell proteinase II) {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase II (mast cell proteinase II)
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=100.00  E-value=3.2e-35  Score=246.00  Aligned_cols=164  Identities=34%  Similarity=0.516  Sum_probs=132.8

Q ss_pred             eeCCeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||.+|..++|||+|+|...    ..++|+||||+++||||||||+..                               
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaA~C~~~~~~v~~g~~~~~~~~~~~~~~~v~~~~~~~~   80 (224)
T d3rp2a_           1 IIGGVESIPHSRPYMAHLDIVTEKGLRVICGGFLISRQFVLTAAHCKGREITVILGAHDVRKRESTQQKIKVEKQIIHES   80 (224)
T ss_dssp             CBSCEECCTTSCTTEEEEEEECTTSCEEEEEEEESSSSEEEECGGGCCSEEEEEESCSBTTSCCTTCEEEEEEEEEECTT
T ss_pred             CCCCEECcCCCCCCEEEEEEEeCCCCeEEEEEEEEcCCeeEecccccccccEEEeccccccCccccceeeeEEEEEeccc
Confidence            689999999999999999763    358999999999999999999854                               


Q ss_pred             ------CCCceee------------------cc-CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 ------GLGIWVT------------------IR-GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 ------~~~i~l~------------------~~-~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                            .++|.|.                  .. .....+..+.+.||+.....+.....|+++.+++++.++|.+.+  
T Consensus        81 ~~~~~~~~diall~L~~~v~~~~~~~p~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~--  158 (224)
T d3rp2a_          81 YNSVPNLHDIMLLKLEKKVELTPAVNVVPLPSPSDFIHPGAMCWAAGWGKTGVRDPTSYTLREVELRIMDEKACVDYR--  158 (224)
T ss_dssp             CCSSSCCSCCEEEEESSCCCCBTTBCCCCCCCTTCCCCTTCEEEEEESSEEETTEEECSBCEEEEEEEECGGGTTTTT--
T ss_pred             ccccccccceeeeeecceeEeccccceEEecccccccCCCcEEEEeeeeeeecCCCccceeeEEEEEccCHHHhhhcc--
Confidence                  1222221                  11 11224678889999987766666678999999999999998753  


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ......++|+.........|.+|+||||+++    |+|+||+|||..|+.  .|.|||||++|++||+++|+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~c~~d~G~Pl~~~----~~l~Gi~S~g~~~~~--~p~vyt~v~~~~~WI~~vi~  224 (224)
T d3rp2a_         159 YYEYKFQVCVGSPTTLRAAFMGDSGGPLLCA----GVAHGIVSYGHPDAK--PPAIFTRVSTYVPWINAVIN  224 (224)
T ss_dssp             CCCTTTEEEECCTTSCCBCCTTTTTCEEEET----TEEEEEEEECCTTCC--SCEEEEEHHHHHHHHHHHHC
T ss_pred             cccccceeeeccCcccccCcCCCcCCeEEEc----CEEEEEEEECCCCCC--CCeEEEEHHHHHHHHHHHhC
Confidence            3456678888776677889999999999994    599999999987763  59999999999999999874

>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Chymase (mast cell protease I)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.5e-35  Score=243.50  Aligned_cols=163  Identities=33%  Similarity=0.542  Sum_probs=128.5

Q ss_pred             CCeeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc---------------------------------
Q psy8662          89 GGQVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ---------------------------------  131 (260)
Q Consensus        89 gG~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~---------------------------------  131 (260)
                      ||++|.++||||+|+|+..    ..++|+|+||+++||||||||+..                                 
T Consensus         1 GG~~a~~~e~Pw~v~i~~~~~~~~~~~C~G~LIs~~~VLTaAhCv~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~p~~~   80 (224)
T d1nn6a_           1 GGTECKPHSRPYMAYLEIVTSNGPSKFCGGFLIRRNFVLTAAHCAGRSITVTLGAHNITEEEDTWQKLEVIKQFRHPKYN   80 (224)
T ss_dssp             CCEECCTTSSTTEEEEEEECTTSCEEEEEEEEEETTEEEECGGGCCSEEEEEESCSBTTSCCTTCEEEEEEEEEECTTCC
T ss_pred             CCcCCcCCCCCCEEEEEEEeCCCCceEEEEEEEeCCEEEehhhcccccceEEecccccccccccccceeEEEEEEeeccc
Confidence            7999999999999999763    357899999999999999999964                                 


Q ss_pred             ----CCCceee------------------cc-CcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCC
Q psy8662         132 ----GLGIWVT------------------IR-GKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENR  188 (260)
Q Consensus       132 ----~~~i~l~------------------~~-~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~  188 (260)
                          ..++.+.                  .. .....+..+...||+.....+..+..++.+.+.+++.++|++.+  ..
T Consensus        81 ~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~--~~  158 (224)
T d1nn6a_          81 TSTLHHDIMLLKLKEKASLTLAVGTLPFPSQFNFVPPGRMCRVAGWGRTGVLKPGSDTLQEVKLRLMDPQACSHFR--DF  158 (224)
T ss_dssp             TTTCTTCCEEEEESSCCCCCSSCCCCCCCSCCCCCCTTCEEEEEECCCCSSSCCCCSBCEEEEEEBCCGGGGTTST--TC
T ss_pred             ccccccchhhhcccCCcccccccccccccccccccCCCceeeeccccccccCCCccccceEEEEEecCHHHHhhhc--cc
Confidence                1122221                  10 11224678889999877766667788999999999999998743  23


Q ss_pred             CCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         189 ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       189 i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .....+|+.......+.|.||+||||++.    |+|+||+|++..|..  .|++||||+.|++||+++|+.
T Consensus       159 ~~~~~~~~~~~~~~~~~c~gDsG~PL~~~----~~l~GI~s~g~~~~~--~p~vyt~v~~y~~WI~~~i~~  223 (224)
T d1nn6a_         159 DHNLQLCVGNPRKTKSAFKGDSGGPLLCA----GVAQGIVSYGRSDAK--PPAVFTRISHYRPWINQILQA  223 (224)
T ss_dssp             CTTTEEEECCTTTC--CCCCCTTCEEEET----TEEEEEEEECCTTCC--SCEEEEEHHHHHHHHHHHHHT
T ss_pred             ccceeeeccCccccccccCCCccceEEEC----CEEEEEEEECCCCCC--CCeEEEEHHHHHHHHHHHHhc
Confidence            45567777666666789999999999984    599999999987764  599999999999999999974

>d2hlca_ b.47.1.2 (A:) HL collagenase {Common cattle grub (Hypoderma lineatum) [TaxId: 7389]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: HL collagenase
species: Common cattle grub (Hypoderma lineatum) [TaxId: 7389]

Probab=100.00  E-value=5.8e-35  Score=244.91  Aligned_cols=166  Identities=31%  Similarity=0.591  Sum_probs=131.1

Q ss_pred             eeCCeeCCCCCCceEEEEEe----cCeeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMY----KKRFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~----~~~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||++|.++||||+|+|++    ++.++|+||||+++||||||||+..                               
T Consensus         1 i~~G~~a~~ge~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~~~v~~~~~~~~~~~~~~~v~~i~~hp~y   80 (230)
T d2hlca_           1 IINGYEAYTGLFPYQAGLDITLQDQRRVWCGGSLIDNKWILTAAHCVHDAVSVVVYLGSAVQYEGEAVVNSERIISHSMF   80 (230)
T ss_dssp             CBTCEECCTTTSTTEEEEEEEETTSCEEEEEEEEEETTEEEECHHHHTTEEEEEEEESCSBTTCCSEEEECSEEEECTTC
T ss_pred             CCCCEECCCCCCCCEEEEEEEecCCCeeEEEEEEEeCCEEEEeeecccccccceeecccceecccccceeeEeEEeeecc
Confidence            78999999999999999976    3578999999999999999999864                               


Q ss_pred             -----CCCceeeccC--------------------cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcC
Q psy8662         132 -----GLGIWVTIRG--------------------KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYE  186 (260)
Q Consensus       132 -----~~~i~l~~~~--------------------~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~  186 (260)
                           ..||.|....                    ....+..+.+.|||...   .....++...+..++.++|...+..
T Consensus        81 ~~~~~~~DiALl~L~~~~~~~~v~pi~l~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~c~~~~~~  157 (230)
T d2hlca_          81 NPDTYLNDVALIKIPHVEYTDNIQPIRLPSGEELNNKFENIWATVSGWGQSN---TDTVILQYTYNLVIDNDRCAQEYPP  157 (230)
T ss_dssp             BTTTTBTCCEEEECSCCCCCSSCCCCBCCCGGGGGCCCTTCEEEEEESSCCS---SCCCBCEEEEEEEECHHHHHTTSCT
T ss_pred             cccccccceeEEEeecccccccceeEEeeccccccccccceeEEEEeecccc---ccchhhheeeeccccchhhhhcccc
Confidence                 1233331111                    11234567778887543   3346789999999999999987666


Q ss_pred             CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCC-CCCCCCcEEEechhhHHHHHHHhh
Q psy8662         187 NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGC-AQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       187 ~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C-~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ......++|+.. ....+.|.||+||||++.  ++|+|+||+||+.+| +..+.|.+||+|++|++||+++|+
T Consensus       158 ~~~~~~~~~~~~-~~~~~~~~gdsGgp~~~~--~~~~l~Gi~S~~~~~~~~~~~p~vyt~V~~y~~WI~~~~~  227 (230)
T d2hlca_         158 GIIVESTICGDT-SDGKSPCFGDSGGPFVLS--DKNLLIGVVSFVSGAGCESGKPVGFSRVTSYMDWIQQNTG  227 (230)
T ss_dssp             TSSCTTEEEECC-TTSCBCCTTCTTCEEEEG--GGTEEEEEEEECCTTCTTSCCCEEEEEGGGGHHHHHHHHC
T ss_pred             ccccccceEecc-ccCccccccccCCCeEEC--CCeEEEEEEEEeCCCCCCCCCCeEEEEhHHhHHHHHHHhC
Confidence            666778888864 445788999999999985  578999999998753 456789999999999999999986

>d1elta_ b.47.1.2 (A:) Elastase {Salmon (Salmo salar) [TaxId: 8030]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Salmon (Salmo salar) [TaxId: 8030]

Probab=100.00  E-value=5.3e-35  Score=245.12  Aligned_cols=169  Identities=35%  Similarity=0.714  Sum_probs=134.3

Q ss_pred             eeCCeeCCCCCCceEEEEEecC----eeeeeeEEEeCCEEEeccccccc-------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQ-------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~----~~~C~GtLIs~~~VLTAAhCv~~-------------------------------  131 (260)
                      |+||++|+.++|||+|+|++..    .++|+||||+++||||||||+..                               
T Consensus         1 iigG~~~~~~~~Pw~v~i~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~   80 (236)
T d1elta_           1 VVGGRVAQPNSWPWQISLQYKSGSSYYHTCGGSLIRQGWVMTAAHCVDSARTWRVVLGEHNLNTNEGKEQIMTVNSVFIH   80 (236)
T ss_dssp             CBSSEECCTTSSTTEEEEEEEETTEEEEEEEEEEEETTEEEECHHHHSSCCCEEEEESCSBTTSCCSCCEEECEEEEEEC
T ss_pred             CCCCEECCCCCCCcEEEEEEccCCcceeEEEEEEEeCCEEEECeeeccccccceeeccceeeecccCCceeeeeeEEEEe
Confidence            6899999999999999997632    46899999999999999999854                               


Q ss_pred             ----------CCCcee------------------eccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWV------------------TIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l------------------~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                +++|.|                  +.... ......+.+.|||....+......+++..+.+++.++|..
T Consensus        81 ~~~~~~~~~~~~diall~l~~~~~~~~~~~picL~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (236)
T d1elta_          81 SGWNSDDVAGGYDIALLRLNTQASLNSAVQLAALPPSNQILPNNNPCYITGWGKTSTGGPLSDSLKQAWLPSVDHATCSS  160 (236)
T ss_dssp             TTCCTTCGGGCCCCEEEEESSCCCCSSSCCCCCCCCTTCCCCTTCCEEEEESCCSSTTCCCCSBCEEEECCEECHHHHTS
T ss_pred             eeecccccccCceEEEeeccCcceeecccceeecCchhcccCCCceEEEecccccccCcccCccceeeeeEEEcHHHhhh
Confidence                      122222                  11111 1235678999999887766677889999999999999987


Q ss_pred             hhcCC-CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         183 TAYEN-RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       183 ~~~~~-~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      ..... .....++|+..  .....|.+|+||||++..+++|+|+||+||+.  +|+..+.|++||||++|++||+++|
T Consensus       161 ~~~~~~~~~~~~~~~~~--~~~~~c~gdsGgpl~~~~~~~~~l~GI~s~~~~~~c~~~~~p~vyt~v~~y~~WI~~vi  236 (236)
T d1elta_         161 SGWWGSTVKTTMVCAGG--GANSGCNGDSGGPLNCQVNGSYYVHGVTSFVSSSGCNASKKPTVFTRVSAYISWMNGIM  236 (236)
T ss_dssp             TTTTGGGSCTTEEEECC--SSCBCCTTCTTCEEEEEETTEEEEEEEEEECCSSCTTCTTCCEEEEEGGGGHHHHHHHC
T ss_pred             hcccccccceeeeecCC--ccccccccccccceEEEECCeEEEEEEEEEeCCCCCCCCCCCEEEEEHHHHHHHHHHhC
Confidence            64333 34455666642  34678999999999999999999999999964  6877788999999999999999975

>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Granzyme B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-36  Score=252.51  Aligned_cols=167  Identities=34%  Similarity=0.554  Sum_probs=134.6

Q ss_pred             eeCCeeCCCCCCceEEEEEe---cCeeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMY---KKRFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~---~~~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||++|..+||||||+|..   ++.++|+||||+++||||||||+..                                
T Consensus         1 iigG~~a~~~~~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTaAhC~~~~~~v~~g~~~~~~~~~~~~~~~v~~i~~~~~~   80 (227)
T d1fq3a_           1 IIGGHEAKPHSRPYMAYLMIWDQKSLKRCGGFLIQDDFVLTAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAY   80 (227)
T ss_dssp             CBTCBCCCTTSCTTEEECCEEETTEEECCEEEEEETTEEEECGGGCCSEEEEEESCSBTTTTCTTCEEEEEEEECCCTTC
T ss_pred             CCCCEECCCCCCCCEEEEEEEcCCCcEEEEEEEEeCCEEEeCEeeccccccceeccccccccccccEEEEEEEEEecccC
Confidence            78999999999999999965   3467899999999999999999864                                


Q ss_pred             -----CCCceee------------------c-cCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCC
Q psy8662         132 -----GLGIWVT------------------I-RGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYEN  187 (260)
Q Consensus       132 -----~~~i~l~------------------~-~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~  187 (260)
                           .+||.|.                  . ......+..+.++|||.+...+.....|+++++.+++.++|++.+...
T Consensus        81 ~~~~~~~DiAll~L~~~i~~~~~v~~~~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~~~~~  160 (227)
T d1fq3a_          81 NPKNFSNDIMLLQLERKAKRTRAVQPLRLPSNKAQVKPGQTCSVAGWGQTAPLGKHSHTLQEVKMTVQEDRKCESDLRHY  160 (227)
T ss_dssp             CTTTTTTCCEEEEESSCCCCCSSCCCCCCCCSSCCCCTTCEEECCCSCCSTTTSCCCSBCCBCEEECCCHHHHTTTCTTT
T ss_pred             CCCCCCcchhhhhcccccccceeEEEEeecccccccCCCCEEEEEeeccccCcccccccceEEEEEEEcHHHhhhhhccc
Confidence                 1123221                  1 111224668889999988776667788999999999999998865555


Q ss_pred             CCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         188 RITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       188 ~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .....++|........+.|.||+||||+++    |+|+||+|+|..|+.  .|.+||||++|++||+++|+.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~gdsG~pl~~~----~~l~GI~s~g~~~~~--~p~vyt~v~~y~~WI~~~i~~  226 (227)
T d1fq3a_         161 YDSTIELCVGDPEIKKTSFKGDSGGPLVCN----KVAQGIVSYGRNNGM--PPRACTKVSSFVHWIKKTMKR  226 (227)
T ss_dssp             CCTTTEECCSCTTSSCBCCTTCTTCBCBSS----SSCCCEECCCCTTSC--SCCCEECHHHHHHHHHHHTTC
T ss_pred             ccccceeeeeccccccccccCCCCceEEEe----CEEEEEEEEcCCCCC--CCcEEEEHHHHHHHHHHHHHh
Confidence            555666666656667889999999999984    489999999998875  489999999999999999974

>d2qy0b1 b.47.1.2 (B:447-686) Complement C1R protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1R protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-34  Score=244.56  Aligned_cols=167  Identities=31%  Similarity=0.565  Sum_probs=134.5

Q ss_pred             eeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc-----------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ-----------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~-----------------------------------  131 (260)
                      |+||.+|..++|||+|.|..+  +.|+||||+++||||||||+..                                   
T Consensus         1 i~~G~~~~~~~~Pw~v~i~~~--~~C~GtLIs~~~VLTaAhC~~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~~v~~i~   78 (240)
T d2qy0b1           1 IIGGQKAKMGNFPWQVFTNIH--GRGGGALLGDRWILTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVS   78 (240)
T ss_dssp             CBSCEECCTTSSTTEEEEESS--SEEEEEEETTTEEEECHHHHSCSSCCC----CCEEEESCSBHHHHHHHCCCCEEEEE
T ss_pred             CCCCEECCCCCcCCEEEECCC--ceEEEEEEcCCEEEEChHhCCCcccccccccceeeeeeeccccccCCcceEEEEEEE
Confidence            789999999999999998654  5799999999999999999853                                   


Q ss_pred             ---C----------CCceeec------------------cCcc-cCCceEEEEeeeecCCCCCCCccceEEEEEeeChhh
Q psy8662         132 ---G----------LGIWVTI------------------RGKS-FSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAE  179 (260)
Q Consensus       132 ---~----------~~i~l~~------------------~~~~-~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~  179 (260)
                         +          +||.|..                  .... ..+..+++.|||.....  .+..++.+.+.+++.+.
T Consensus        79 vhp~y~~~~~~~~~~DiAll~L~~pi~~~~~v~pi~l~~~~~~~~~~~~~~~~g~g~~~~~--~~~~~~~~~~~~~~~~~  156 (240)
T d2qy0b1          79 VHPDYRQDESYNFEGDIALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEK--IAHDLRFVRLPVANPQA  156 (240)
T ss_dssp             ECTTCCTTCSSCCTTCCEEEEESSCCCCBTTBCCCBCCCSGGGGCTTCEEEEEECCCCSSS--CCSBCEEEEEEBCCHHH
T ss_pred             eccccccccccccCCCceEEecCCccccccccceEEecccccccccCceeeeccccccccc--ccccceEEEEEEcCHHH
Confidence               1          1233311                  1111 13567899999876643  35678899999999999


Q ss_pred             Hhhhhc----CCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeC--CeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHH
Q psy8662         180 CKKTAY----ENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANE--TVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       180 C~~~~~----~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~--~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  253 (260)
                      |+..+.    ...+.++++|+.......+.|.||+|+||++..+  ++|+|+||+||+.+|+.  .|+|||||++|++||
T Consensus       157 C~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~gdsG~pl~~~~~~~~~~~l~Gi~S~g~~c~~--~p~vft~v~~~~~WI  234 (240)
T d2qy0b1         157 CENWLRGKNRMDVFSQNMFCAGHPSLKQDACQGDSGGVFAVRDPNTDRWVATGIVSWGIGCSR--GYGFYTKVLNYVDWI  234 (240)
T ss_dssp             HHHHHHHTTCCCCCCTTEEEESCTTCCCBCCTTCTTCEEEEECTTTCCEEEEEEEEECSSSSS--SCEEEEEGGGGHHHH
T ss_pred             HHHHhhccccCCceecceEEeccCCccceeeccccccceEEEeCCCCeEEEEEEEEECCCCCC--CCeEEEEHHHHHHHH
Confidence            997642    2246789999987777788999999999999764  68999999999999975  489999999999999


Q ss_pred             HHHhhc
Q psy8662         254 KNNTID  259 (260)
Q Consensus       254 ~~~~~~  259 (260)
                      +++|++
T Consensus       235 ~~~i~~  240 (240)
T d2qy0b1         235 KKEMEE  240 (240)
T ss_dssp             HHHTTC
T ss_pred             HHHhcC
Confidence            999985

>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Complement C1S protease, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-35  Score=248.20  Aligned_cols=170  Identities=34%  Similarity=0.683  Sum_probs=130.1

Q ss_pred             CCCCceeCCeeCCCCCCceEEEEEecCeeeeeeEEEeCCEEEeccccccc------------------------------
Q psy8662          82 NKKTRIVGGQVTYVHQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQ------------------------------  131 (260)
Q Consensus        82 ~~~~ri~gG~~a~~~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------  131 (260)
                      ....||+||+++..++|||+|.|.   .++|+||||+++||||||||+..                              
T Consensus         9 ~~~~ri~gG~~~~~~~~Pw~v~l~---~~~C~GtLIs~~~VLTaAhCv~~~~~~~v~~g~~~~~~~~~~~~~~~~v~~i~   85 (259)
T d1elva1           9 EEKQRIIGGSDADIKNFPWQVFFD---NPWAGGALINEYWVLTAAHVVEGNREPTMYVGSTSVQTSRLAKSKMLTPEHVF   85 (259)
T ss_dssp             -----CBTCEECCGGGSTTEEEEE---TTEEEEEEEETTEEEECHHHHTTCSSCCEECSCSBCC-------CEECEEEEE
T ss_pred             CCCCceECCEECCCCCcceEEEeC---CceEEEEEEeCCEEEecccccccccceeEEeeeeeeecccccccccccceeEe
Confidence            356799999999999999999994   46899999999999999999854                              


Q ss_pred             -----------------CCCceeeccC---------------------cccCCceEEEEeeeecCCCCCCCccceEEEEE
Q psy8662         132 -----------------GLGIWVTIRG---------------------KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVP  173 (260)
Q Consensus       132 -----------------~~~i~l~~~~---------------------~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~  173 (260)
                                       ++||.|....                     ....+..+.+.||+.+.... ....++...+.
T Consensus        86 ~hp~~~~~~~~~~~~~~~~DIAllkL~~~~~~~~~v~pic~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~  164 (259)
T d1elva1          86 IHPGWKLLAVPEGRTNFDNDIALVRLKDPVKMGPTVSPICLPGTSSDYNLMDGDLGLISGWGRTEKRD-RAVRLKAARLP  164 (259)
T ss_dssp             ECTTSCCCSSCTTCCCCTTCCEEEEESSCCCCBTTBCCCBCCCSSGGGCCCTTCEEEEEESCCCSSCS-SCSBCEEEEEE
T ss_pred             ecceeecccccccCCCcccceeeeecccceehhcccCceeeccCccccccccceEEEEeccccccccc-cccccccceee
Confidence                             1133331110                     12245678999998766443 34568899999


Q ss_pred             eeChhhHhhhhcC--------CCCCCCeEEeecCCCCCCCCcCCCCCceEEee---CCeeEEEEEEeeCCCCCCCCCCcE
Q psy8662         174 ILSNAECKKTAYE--------NRITPNMLCAGYPKGEKDSCQGDSGGPLHYAN---ETVHHIVGVVSWGEGCAQENYPGV  242 (260)
Q Consensus       174 vi~~~~C~~~~~~--------~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~---~~~~~L~GI~S~g~~C~~~~~p~v  242 (260)
                      +++...|...+..        ..+.+.++|++... ..+.|.||+||||++..   +++|+|+||+||+..|+.   |.+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~c~gDsGgPl~~~~~~~~~~~~l~Gi~S~~~~c~~---p~v  240 (259)
T d1elva1         165 VAPLRKCKEVKVEKPTADAEAYVFTPNMICAGGEK-GMDSCKGDSGGAFAVQDPNDKTKFYAAGLVSWGPQCGT---YGL  240 (259)
T ss_dssp             EECHHHHHTC----------CCCCCTTEEEEECST-TCBCCTTCTTCEEEEECSSCTTCEEEEEEEEECSSTTS---EEE
T ss_pred             EechhhceeeeecccccccccceeecceeeccCCC-CCccCCCCcCCeEEEEecCCCcEEEEEEEEEeCCCCCC---ceE
Confidence            9999999765322        13677888887654 47899999999999875   368999999999999863   899


Q ss_pred             EEechhhHHHHHHHhhc
Q psy8662         243 YARVNRYLTWIKNNTID  259 (260)
Q Consensus       243 yt~V~~y~~WI~~~~~~  259 (260)
                      ||||++|++||+++|++
T Consensus       241 ft~V~~~~~WI~~~i~~  257 (259)
T d1elva1         241 YTRVKNYVDWIMKTMQE  257 (259)
T ss_dssp             EEEGGGGHHHHHHHHHH
T ss_pred             EeEHHHHHHHHHHHHHh
Confidence            99999999999999985

>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Elastase
species: Worm (Eisenia fetida) [TaxId: 6396]

Probab=100.00  E-value=2.8e-34  Score=241.19  Aligned_cols=170  Identities=31%  Similarity=0.689  Sum_probs=134.8

Q ss_pred             eeCCeeCCCCCCceEEEEEecC---eeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYKK---RFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~~---~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||.++.+++|||||+|+.+.   .++|+||||+++||||||||+..                                
T Consensus         1 i~gG~~~~~~e~Pw~v~l~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~~~~~~~~~~~~~~~~v~~~~~h   80 (241)
T d1m9ua_           1 VIGGTNASPGEFPWQLSQQRQSGSWSHSCGASLLSSTSALSASHCVDGVLPNNIRVIAGLWQQSDTSGTQTANVDSYTMH   80 (241)
T ss_dssp             CBTCEECCTTSSTTEEEEEEESSSEEEEEEEEECSSSEEEECHHHHTTCCGGGEEEEESCSBTTCCTTCEEEEEEEEEEC
T ss_pred             CCCCEECCCCCCCCEEEEEEeCCCccEEEEEEEEeCCEEEEChhhcccccCceeeEEEEeeecccccccccccceeeeee
Confidence            7899999999999999998753   57999999999999999999853                                


Q ss_pred             ----------CCCcee------------------e-ccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhh
Q psy8662         132 ----------GLGIWV------------------T-IRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKK  182 (260)
Q Consensus       132 ----------~~~i~l------------------~-~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~  182 (260)
                                +++|.|                  + .......+..+.+.||+.....+.....++.+.+++++.++|++
T Consensus        81 ~~~~~~~~~~~~diall~l~~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~  160 (241)
T d1m9ua_          81 ENYGAGTASYSNDIAILHLATSISLGGNIQAAVLPANNNNDYAGTTCVISGWGRTDGTNNLPDILQKSSIPVITTAQCTA  160 (241)
T ss_dssp             TTTTCSSSTTTTCCEEEEESSCCCCCSSCCCCCCCSCSSCCCTTCEEEEEESSCSSSSSCCCSBCEEEEEEBCCHHHHHH
T ss_pred             eeeccccccccccceeeeccceeeeeeceeeeeeeccccccccceEEEEeecccccCCCCCCCcceEEEEEeechhHhhh
Confidence                      112222                  1 11123356788999999887666667889999999999999987


Q ss_pred             hhcC---CCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeC----CCCCCCCCCcEEEechhhHHHHHH
Q psy8662         183 TAYE---NRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWG----EGCAQENYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       183 ~~~~---~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g----~~C~~~~~p~vyt~V~~y~~WI~~  255 (260)
                      .+..   .......+|........+.|.||+||||++.. +.|+|+||+|+.    ..|+..+.|++||||+.|++||++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sGgpl~~~~-~~~~l~Gi~s~~~~~g~~~~~~~~p~vft~V~~y~~WI~~  239 (241)
T d1m9ua_         161 AMVGVGGANIWDNHICVQDPAGNTGACNGDSGGPLNCPD-GGTRVVGVTSWVVSSGLGACLPDYPSVYTRVSAYLGWIGD  239 (241)
T ss_dssp             HHTTSTTCCCCTTEEEECCTTSCCBCCTTCTTCEEEEES-SSEEEEEEEEECCBCTTSCBCTTSCEEEEEGGGTHHHHHH
T ss_pred             hhhcccccccccceeEeecccCCcCcccCCCCcceEEec-CCEEEEEEEEEEEcCCCCCCCCCCCEEEEEHHHhHHHHHH
Confidence            6432   23455667776666668899999999999864 578999999865    457777889999999999999998


Q ss_pred             Hh
Q psy8662         256 NT  257 (260)
Q Consensus       256 ~~  257 (260)
                      |+
T Consensus       240 n~  241 (241)
T d1m9ua_         240 NS  241 (241)
T ss_dssp             HC
T ss_pred             cc
Confidence            74

>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Myeloblastin, PR3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-33  Score=232.65  Aligned_cols=158  Identities=32%  Similarity=0.583  Sum_probs=124.1

Q ss_pred             eeCCeeCCCCCCceEEEEEec---CeeeeeeEEEeCCEEEeccccccc--------------------------------
Q psy8662          87 IVGGQVTYVHQYPWMALLMYK---KRFYCGATLINNLYVLTAAHCVHQ--------------------------------  131 (260)
Q Consensus        87 i~gG~~a~~~~~Pw~v~l~~~---~~~~C~GtLIs~~~VLTAAhCv~~--------------------------------  131 (260)
                      |+||++|+.++|||+|+|+..   +.++|+||||+++||||||||+..                                
T Consensus         1 i~gG~~a~~~~~Pw~v~i~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~   80 (221)
T d1fuja_           1 IVGGHEAQPHSRPYMASLQMRGNPGSHFCGGTLIHPSFVLTAAHCLRDIPQRLVNVVLGAHNVRTQEPTQQHFSVAQVFL   80 (221)
T ss_dssp             CBSCEECCTTSCTTEEEEEETTBTTCCCEEEEEEETTEEEECGGGGSSSCGGGEEEEESCSBTTSCCTTCEEEEEEEEEE
T ss_pred             CCCCEECCCCCCCcEEEEEEecCCCCEEEEEEEEeCCEEEEeeEEEeecCCccceeeeeccccccccccceeeeeeeEEE
Confidence            689999999999999999864   357899999999999999999965                                


Q ss_pred             --------CCCce------------------eeccCc-ccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhh
Q psy8662         132 --------GLGIW------------------VTIRGK-SFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTA  184 (260)
Q Consensus       132 --------~~~i~------------------l~~~~~-~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~  184 (260)
                              ..++.                  |+.... ...+..+.+.||+.....+.....++...+.+.+...|..  
T Consensus        81 ~~~~~~~~~~diAll~L~~~~~~~~~v~picl~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--  158 (221)
T d1fuja_          81 NNYDAENKLNDILLIQLSSPANLSASVATVQLPQQDQPVPHGTQCLAMGWGRVGAHDPPAQVLQELNVTVVTFFCRPH--  158 (221)
T ss_dssp             CCCBTTTTBCCCEEEEESSCCCCCSSCCCCBCCCTTCCCCTTCEEEEEESSBSCSSSCBCSBCEEEEEEEECTTCCTT--
T ss_pred             eeecCCCCccEEEEEEccccccccceEEEEEecccccccCCCceEEEecccccccccccCccceeeeeeeeeeccccc--
Confidence                    11222                  222221 2346788899999877766677788998888886543322  


Q ss_pred             cCCCCCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhh
Q psy8662         185 YENRITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       185 ~~~~i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~  258 (260)
                              ..|........+.|.||+||||+++    ++|+||+||+. +|+..+.|++||||+.|++||+++|+
T Consensus       159 --------~~~~~~~~~~~~~c~gd~G~pl~~~----~~l~Gi~s~~~~gc~~~~~p~vyt~v~~~~~WI~~~ik  221 (221)
T d1fuja_         159 --------NICTFVPRRKAGICFGDSGGPLICD----GIIQGIDSFVIWGCATRLFPDFFTRVALYVDWIRSTLR  221 (221)
T ss_dssp             --------EEEEECSSSSCBCCTTCTTCEEEET----TEEEEEEEECSSSTTCSSSCEEEEEGGGGHHHHHHHHC
T ss_pred             --------cceeccccCCCceeCCccCCCEEEe----CEEEEEEEEEECCCCCCCCCeEEEEHHHhHHHHHHHhC
Confidence                    2333334556899999999999985    48999999986 78888889999999999999999986

>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Procarboxypeptidase A-S6 subunit III (zymogen E)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.8e-33  Score=233.39  Aligned_cols=161  Identities=29%  Similarity=0.635  Sum_probs=127.3

Q ss_pred             CCceEEEEEecC----eeeeeeEEEeCCEEEecccccccC----------------------------------------
Q psy8662          97 QYPWMALLMYKK----RFYCGATLINNLYVLTAAHCVHQG----------------------------------------  132 (260)
Q Consensus        97 ~~Pw~v~l~~~~----~~~C~GtLIs~~~VLTAAhCv~~~----------------------------------------  132 (260)
                      .|||||+|+++.    .|+|+||||+++||||||||+...                                        
T Consensus         1 ~~PW~v~l~~~~~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~hp~~~~~~~   80 (232)
T d1fona_           1 SWSWQVSLQYEKDGAFHHTCGGSLIAPDWVVTAGHCISTSRTYQVVLGEYDRSVLEGSEQVIPINAGDLFVHPLWNSNCV   80 (232)
T ss_dssp             CEEEEEEEEEEETTEEEEEECCEEEETTEEEECGGGCCTTSCEEEEEEEEETTEEEEEEEEEEECTTSEEECTTCCTTCG
T ss_pred             CCccEEEEEEeCCCceEEEEEEEEecCCEEEEChhhccCCCceEEEEEeccccccccccccccceeEEEEEccCcccccc
Confidence            499999998742    468999999999999999998651                                        


Q ss_pred             ---CCceee------------------ccC-cccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhc-CCCC
Q psy8662         133 ---LGIWVT------------------IRG-KSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAY-ENRI  189 (260)
Q Consensus       133 ---~~i~l~------------------~~~-~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~-~~~i  189 (260)
                         .+|.|.                  ... ....+..+.+.||+....++..+..++...+++++.+.|.+... ...+
T Consensus        81 ~~~~diAll~l~~~~~~~~~~~pic~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (232)
T d1fona_          81 ACGNDIALVKLSRSAQLGDKVQLANLPPAGDILPNEAPCYISGWGRLYTGGPLPDKLQQALLPTVDYEHCSQWDWWGITV  160 (232)
T ss_dssp             GGCCCCEEEECSSCCCCTTSCCCCBCCCTTCCCCTTCCCEEEECTTCCCSSSCCSBCEEEECCEECHHHHTSTTTTGGGC
T ss_pred             ccccceeeeecccceEEeecceeeecCcccccCCCCceeEeeccccccCCCCCCCcceEEEEEEEcHHHhhhhhccCcee
Confidence               122221                  111 11235678889999887777777889999999999999987543 3356


Q ss_pred             CCCeEEeecCCCCCCCCcCCCCCceEEee-CCeeEEEEEEeeCC--CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         190 TPNMLCAGYPKGEKDSCQGDSGGPLHYAN-ETVHHIVGVVSWGE--GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       190 ~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~-~~~~~L~GI~S~g~--~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ...++|+..  .....|.+|+||||++.. +++|+|+||+|++.  +|+..+.|++||||++|++||+++|++
T Consensus       161 ~~~~~c~~~--~~~~~~~gdsGgpl~~~~~~~~~~L~Gi~s~~~~~~c~~~~~p~vyt~V~~y~~WI~~~i~~  231 (232)
T d1fona_         161 KKTMVCAGG--DTRSGCNGDSGGPLNCPAADGSWQVHGVTSFVSAFGCNTIKKPTVFTRVSAFIDWIDETIAS  231 (232)
T ss_dssp             CTTEEEECC--SSSCSTTSCTTCEEEEECSSSCEEEEEEEEECCTTCSSBTTBCEEEEEGGGSHHHHHHHHHH
T ss_pred             eeceeeecc--ccccccccCCCCceEEEccCCCEEEEEEEEEcCCCCCCCCCCCEEEEEHHHHHHHHHHHHHc
Confidence            788999874  346789999999999864 58999999999975  477777899999999999999999975

>d1sgfa_ b.47.1.2 (A:) 7S NGF protease subunits {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: 7S NGF protease subunits
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-33  Score=234.64  Aligned_cols=158  Identities=30%  Similarity=0.648  Sum_probs=117.2

Q ss_pred             CCCceEEEEEecCeeeeeeEEEeCCEEEecccccccC-------------------------------------------
Q psy8662          96 HQYPWMALLMYKKRFYCGATLINNLYVLTAAHCVHQG-------------------------------------------  132 (260)
Q Consensus        96 ~~~Pw~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~~-------------------------------------------  132 (260)
                      +.+||||+|+.+++++|+||||+++||||||||+...                                           
T Consensus         1 ~~~Pw~v~i~~~~~~~C~GtLIs~~~VLTaAhCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (228)
T d1sgfa_           1 NSQPWHVAVYRFNKYQCGGVLLDRNWVLTAAHCYNDKYQVWLGKNNFLEDEPSDQHRLVSKAIPHPDFNMSLLNEHTPQP   80 (228)
T ss_dssp             CCCTTEEEEECTTSCCEEEEECSSSEEEECGGGCCSCCEEEECC----C-CTTCEEEEEEEEEECTTSCGGGC----CCT
T ss_pred             CCCCcEEEEEECCcEEEEEEEEcCCEEEeCHHHccCCceEEEeeeeeccccccceeeeeeeeccccceeeeeecccCCCC
Confidence            3679999999999999999999999999999999651                                           


Q ss_pred             -----CCcee------------------eccCcccCCceEEEEeeeecCCC-CCCCccceEEEEEeeChhhHhhhhcCCC
Q psy8662         133 -----LGIWV------------------TIRGKSFSNKTGIVTGWGVQKQG-GSTSDTLLEVEVPILSNAECKKTAYENR  188 (260)
Q Consensus       133 -----~~i~l------------------~~~~~~~~~~~~~v~Gwg~~~~~-~~~~~~l~~~~v~vi~~~~C~~~~~~~~  188 (260)
                           +||.+                  +.. .......+.+.||+.+... ...+..|+...+.+++.++|++. ....
T Consensus        81 ~~~~~~Diall~L~~~v~~~~~v~pi~l~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~C~~~-~~~~  158 (228)
T d1sgfa_          81 EDDYSNDLMLLRLSKPADITDVVKPITLPTE-EPKLGSTCLASGWGSTTPIKFKYPDDLQCVNLKLLPNEDCDKA-HEMK  158 (228)
T ss_dssp             TCBCTTCCEEEEESSCCCCCSSCCCCCCCCS-CCCTTCEEEEC-------C---------CEEEEEECTHHHHTT-CSSB
T ss_pred             ccccccceeEEeeccccccCCceeeEecCcc-ccccCcceEEEeeeeccCCccCCCCccEEEEEEEeCHHHhhhh-ccCC
Confidence                 11222                  111 1224567888999876543 34567799999999999999875 4455


Q ss_pred             CCCCeEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC-CCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         189 ITPNMLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE-GCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       189 i~~~~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~-~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      ..+.++|+....+....|.+|+|+||++.    |+|+||+|||. .|+..+.|++||||+.|++||+++|++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~d~G~pl~~~----~~l~Gv~S~g~~~c~~~~~p~vyt~V~~~~~WI~~~i~~  226 (228)
T d1sgfa_         159 VTDAMLCAGEMDGGSYTCEHDSGGPLICD----GILQGITSWGPEPCGEPTEPSVYTKLIKFSSWIRETMAN  226 (228)
T ss_dssp             CCTTEEEEEECSSSEEECCCCTTCEEEET----TEEEEEECCCCSSCCCSSCCEEEEESGGGHHHHHHHHHS
T ss_pred             cccceEEeccCCCCccccCCCcCCcEEEe----CEEEEEEEECCCCCCCCCCCeEEEEHHHHHHHHHHHHhH
Confidence            67788898877676789999999999984    49999999986 687778899999999999999999975

>d1rrka1 b.47.1.2 (A:453-739) Factor B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Eukaryotic proteases
domain: Factor B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=9e-33  Score=240.13  Aligned_cols=169  Identities=25%  Similarity=0.418  Sum_probs=112.3

Q ss_pred             eeCCCCCCceEEEEEec----CeeeeeeEEEeCCEEEeccccccc---------------------------C-------
Q psy8662          91 QVTYVHQYPWMALLMYK----KRFYCGATLINNLYVLTAAHCVHQ---------------------------G-------  132 (260)
Q Consensus        91 ~~a~~~~~Pw~v~l~~~----~~~~C~GtLIs~~~VLTAAhCv~~---------------------------~-------  132 (260)
                      +.+..++|||+|+|.+.    +.++|+||||+++||||||||+..                           +       
T Consensus         9 ~~t~~~e~PW~v~i~~~~~~~~~~~C~GtLIs~~~VLTAAhCv~~~~~~~~~~v~~g~~~~~~~v~~i~~Hp~y~~~~~~   88 (287)
T d1rrka1           9 KGTDYHKQPWQAKISVIRPSKGHESCMGAVVSEYFVLTAAHCFTVDDKEHSIKVSVGGEKRDLEIEVVLFHPNYNINGKK   88 (287)
T ss_dssp             TCCHHHHSTTEEEEEECC--CCCEEEEEEECSSSEEEECGGGCCTTCCGGGEEEEETTCSSCEEEEEEEECTTCCTTTTG
T ss_pred             CCCCcCCCCCEEEEEEEECCCCcEEEEEEEecCCEEEEChhheecCCCcceEEEEeCCeeceeeeEEEEecCCccccccc
Confidence            34667899999999763    368999999999999999999853                           1       


Q ss_pred             ---------CCceeeccCcccC-----CceE-------------------EEEeeeecCC-------CCCCCccceEEEE
Q psy8662         133 ---------LGIWVTIRGKSFS-----NKTG-------------------IVTGWGVQKQ-------GGSTSDTLLEVEV  172 (260)
Q Consensus       133 ---------~~i~l~~~~~~~~-----~~~~-------------------~v~Gwg~~~~-------~~~~~~~l~~~~v  172 (260)
                               +||.|......+.     ...|                   ...+|+....       .......++...+
T Consensus        89 ~~~~~~~~~~DIALl~L~~~~~~s~~v~PIcLp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  168 (287)
T d1rrka1          89 EAGIPEFYDYDVALIKLKNKLKYGQTIRPICLPCTEGTTRALRLPPTTTCQQQKEELLPAQDIKALFVSEEEKKLTRKEV  168 (287)
T ss_dssp             GGTCSSCCTTCCEEEEESSCCCCBTTBCCCBCTTBHHHHHHTTCCTTCCHHHHHHHHSCSSEEEEEEEEESSSCEEEEEE
T ss_pred             cccCCCcccccEEEEecccCccccceEEEEecCCccccccccccCCcceEeecCceeecCCCccccccccCCceeEEEEE
Confidence                     2333322111110     0000                   0011111100       0112345677777


Q ss_pred             EeeChhhH---hhhh-----------cCCCCCCCeEEeecCC--CCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCC--C
Q psy8662         173 PILSNAEC---KKTA-----------YENRITPNMLCAGYPK--GEKDSCQGDSGGPLHYANETVHHIVGVVSWGEG--C  234 (260)
Q Consensus       173 ~vi~~~~C---~~~~-----------~~~~i~~~~~Ca~~~~--~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~--C  234 (260)
                      .+.+...|   ....           ....++++||||+...  .+.++|.|||||||++..+++|+|+||+|||..  |
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Cag~~~~~~~~~~C~GDSGgPL~~~~~~~~~lvGI~S~G~~~~~  248 (287)
T d1rrka1         169 YIKNGDKKGSCERDAQYAPGYDKVKDISEVVTPRFLCTGGVSPYADPNTCRGDSGGPLIVHKRSRFIQVGVISWGVVDVC  248 (287)
T ss_dssp             EEECSTTHHHHHHGGGGSTTCTTCSCGGGTSCTTEEEEESSSSSCCCCCCGGGTTCEEEEEETTEEEEEEEEEEESCCCC
T ss_pred             EEeccchhhhhhhhhhccccccccccccccccCCceEecccCCCcCCCCCCCCccCCeEEecCCeEEEEEEEEecCCcCc
Confidence            77765543   2211           1125678999997543  346789999999999999999999999999742  3


Q ss_pred             C--------CCCCCcEEEechhhHHHHHHHhhc
Q psy8662         235 A--------QENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       235 ~--------~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .        ....|.|||||+.|++||+++|++
T Consensus       249 ~~~~~~~~~~~~~~~vyt~V~~y~~WI~~~i~~  281 (287)
T d1rrka1         249 KNQKRQKQVPAHARDFHINLFQVLPWLKEKLQD  281 (287)
T ss_dssp             --------CCTTCEEEEEEGGGGHHHHHHHTTT
T ss_pred             CCCCCCCcCCCCCCcEEEEHHHHHHHHHHHhcC
Confidence            2        224688999999999999999986

>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Achromobacter protease
species: Achromobacter lyticus, strain m497-1 [TaxId: 224]

Probab=99.88  E-value=7e-24  Score=181.18  Aligned_cols=153  Identities=18%  Similarity=0.224  Sum_probs=96.4

Q ss_pred             eEEEEEecCeeeeeeEEEe------CCEEEeccccccc------------------------------------------
Q psy8662         100 WMALLMYKKRFYCGATLIN------NLYVLTAAHCVHQ------------------------------------------  131 (260)
Q Consensus       100 w~v~l~~~~~~~C~GtLIs------~~~VLTAAhCv~~------------------------------------------  131 (260)
                      .+|.+...+.++|+||||+      ++||||||||+..                                          
T Consensus        24 ~v~~~~~~g~~~CGGsLI~~~~~~~~~~VLTAAHCv~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (263)
T d1arba_          24 AVGAYSKSGTLACTGSLVNNTANDRKMYFLTAHHCGMGTASTAASIVVYWNYQNSTCRAPNTPASGANGDGSMSQTQSGS  103 (263)
T ss_dssp             GEEEEEETTEEEEEEEEBCCTTCCCCCEEEEEGGGSCCSHHHHHTCEEEESCCCSSCCCTTSGGGGSCCCCCCCCEEECE
T ss_pred             EEEEEecCCcEEEEEEEECCCCCCccceEEEchhhCCCCCCcceEEEEEEEeecccceeeeeeeeecccCccceeeecch
Confidence            4577888889999999998      6799999999864                                          


Q ss_pred             -------CCCceeeccCccc-CCceEEEEeeeecCCCCCCCccce--EEEEEeeChhhHhhh--hcCCCCCCCeEEeecC
Q psy8662         132 -------GLGIWVTIRGKSF-SNKTGIVTGWGVQKQGGSTSDTLL--EVEVPILSNAECKKT--AYENRITPNMLCAGYP  199 (260)
Q Consensus       132 -------~~~i~l~~~~~~~-~~~~~~v~Gwg~~~~~~~~~~~l~--~~~v~vi~~~~C~~~--~~~~~i~~~~~Ca~~~  199 (260)
                             .+++.++...... ........+|+...........++  ...+..+....|...  .+...+...++|+...
T Consensus       104 ~l~~~~~~~Diall~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~  183 (263)
T d1arba_         104 TVKATYATSDFTLLELNNAANPAFNLFWAGWDRRDQNYPGAIAIHHPNVAEKRISNSTSPTSFVAWGGGAGTTHLNVQWQ  183 (263)
T ss_dssp             EEEEEETTTTEEEEEESSCCCGGGCCEEBCEECCSCCCSCEEEEECGGGCSCEEEEECSCCEEECTTSSSCSSEEEEECC
T ss_pred             heeecCCCcceeeeecccccccccceeeeccCccccCCccccceeccccceeeeecccccchhhccCCCCCccEEEEEec
Confidence                   0112222222211 234566777776543322111111  111122222223221  1344567789999877


Q ss_pred             CCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCC----CCCCCCCCcEEEechhhHHHHHHH
Q psy8662         200 KGEKDSCQGDSGGPLHYANETVHHIVGVVSWGE----GCAQENYPGVYARVNRYLTWIKNN  256 (260)
Q Consensus       200 ~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~----~C~~~~~p~vyt~V~~y~~WI~~~  256 (260)
                      .+..+.|+|||||||+++++   .++||+|++.    .|+ .+.|++|+||++|..||...
T Consensus       184 ~~~~~~c~GDSGGPL~~~~g---~~vGvvsgg~s~c~~c~-~~~p~vYtrV~~~~~~~~~~  240 (263)
T d1arba_         184 PSGGVTEPGSSGSPIYSPEK---RVLGQLHGGPSSCSATG-TNRSDQYGRVFTSWTGGGAA  240 (263)
T ss_dssp             TTSCCCCTTCTTCEEECTTS---CEEEEEEECSCCTTCCG-GGSEEEEEEHHHHHHTTSSG
T ss_pred             CCCccccCCCCcceEEecCC---CEEEEEEEEEeCCcCCC-CCCCceEEEEEEeeccCCcc
Confidence            77778999999999997543   4888888874    344 46899999999986666443

>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamyl endopeptidase
species: Bacillus intermedius [TaxId: 1400]

Probab=99.83  E-value=1.9e-22  Score=166.14  Aligned_cols=141  Identities=20%  Similarity=0.234  Sum_probs=89.8

Q ss_pred             CCCCceEEEEEe-cCeeeeeeEEEeCCEEEeccccccc------------------------------------------
Q psy8662          95 VHQYPWMALLMY-KKRFYCGATLINNLYVLTAAHCVHQ------------------------------------------  131 (260)
Q Consensus        95 ~~~~Pw~v~l~~-~~~~~C~GtLIs~~~VLTAAhCv~~------------------------------------------  131 (260)
                      ...|||.+.++. .+.+.|+|+||+++||||||||+..                                          
T Consensus        14 ~~~~P~~~~~~i~~~~~~CsG~LI~~~~VLTaaHCv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (215)
T d1p3ca_          14 TRVAPYNSIAYITFGGSSCTGTLIAPNKILTNGHCVYNTASRSYSAKGSVYPGMNDSTAVNGSANMTEFYVPSGYINTGA   93 (215)
T ss_dssp             TTSTTGGGEEEEECSSCEEEEEEEETTEEEECHHHHEETTTTEECCCCEEEETCBTTBCTTCCEEEEEEECCHHHHHHCC
T ss_pred             CCCCCcEEEEEEEcCCeEEEEEEEeCCEEEECcceeccCCCCceeeeEEEeccccCCCCCceeEEEeEEEEecccccCCC
Confidence            567999665553 4567899999999999999999854                                          


Q ss_pred             -CCCceee---------------ccCcccCCceEEEEeeeecCCCCCCCccceEEEEEeeChhhHhhhhcCCCCCCCeEE
Q psy8662         132 -GLGIWVT---------------IRGKSFSNKTGIVTGWGVQKQGGSTSDTLLEVEVPILSNAECKKTAYENRITPNMLC  195 (260)
Q Consensus       132 -~~~i~l~---------------~~~~~~~~~~~~v~Gwg~~~~~~~~~~~l~~~~v~vi~~~~C~~~~~~~~i~~~~~C  195 (260)
                       ++|+.+.               .......++.+.+.||+...........+...........             ...+
T Consensus        94 ~~~DiAll~l~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~  160 (215)
T d1p3ca_          94 SQYDFAVIKTDTNIGNTVGYRSIRQVTNLTGTTIKISGYPGDKMRSTGKVSQWEMSGSVTRED-------------TNLA  160 (215)
T ss_dssp             GGGCCEEEEESSCHHHHHCCCCBCCCSCCTTCEEEEEECCHHHHHHHSSCCCEEEEEECCEEC-------------SSEE
T ss_pred             ccceEEEEEeccCCCccccccccccccccCCceeEEEcCCCCcCCCcccceeeEeeecccccc-------------cccc
Confidence             1122221               0112335678889999754322111111222211111111             1111


Q ss_pred             eecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCC-CCCcEEEechhhHHHHHH
Q psy8662         196 AGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQE-NYPGVYARVNRYLTWIKN  255 (260)
Q Consensus       196 a~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~-~~p~vyt~V~~y~~WI~~  255 (260)
                      .    ...+.|.|||||||+.   ..++|+||+|+|..|+.. ..|.+|++|.+|++||++
T Consensus       161 ~----~~~~~~~G~SGgPl~~---~~~~lvGi~s~g~~~~~~~~~~~i~~~v~~~i~wi~~  214 (215)
T d1p3ca_         161 Y----YTIDTFSGNSGSAMLD---QNQQIVGVHNAGYSNGTINGGPKATAAFVEFINYAKA  214 (215)
T ss_dssp             E----ECCCCCTTCTTCEEEC---TTSCEEEECCEEEGGGTEEEEEBCCHHHHHHHHHHHT
T ss_pred             e----eecccCCCCccCeEEC---CCCEEEEEEEeccCCCCCCCCeEEEeEHHHHHHHHHc
Confidence            1    1256899999999984   356899999998776542 347889999999999987

>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.52  E-value=3.5e-14  Score=116.38  Aligned_cols=51  Identities=20%  Similarity=0.324  Sum_probs=36.0

Q ss_pred             CCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHhhc
Q psy8662         203 KDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNTID  259 (260)
Q Consensus       203 ~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~~~  259 (260)
                      .+.|.|+||||++.. +  +.|+||+++|..+..  ..+++. .....+||++++.+
T Consensus       162 ~~~~~G~SGgPv~~~-~--g~vVGI~s~g~~~~~--~~~v~~-~~~~~~~i~~~i~~  212 (216)
T d2o8la1         162 LSTTGGNSGSPVFNE-K--NEVIGIHWGGVPNEF--NGAVFI-NENVRNFLKQNIED  212 (216)
T ss_dssp             CCCCTTCTTCEEECT-T--SCEEEEEEEEETTTE--EEEEEC-CHHHHHHHHHHCTT
T ss_pred             cCcCCCCCCCcEECC-C--CEEEEEEeeecCCCC--cceEec-CHHHHHHHHHhhhh
Confidence            467999999999832 2  369999999854332  123332 24688999999876

>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Glutamic acid-specific protease
species: Streptomyces griseus [TaxId: 1911]

Probab=99.51  E-value=3.9e-15  Score=118.80  Aligned_cols=57  Identities=21%  Similarity=0.221  Sum_probs=45.5

Q ss_pred             eEEeecCCCCCCCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHH
Q psy8662         193 MLCAGYPKGEKDSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       193 ~~Ca~~~~~~~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  253 (260)
                      ..|..........|.|||||||+..+    .++||+|++..|+....+.+|++|+.++++.
T Consensus       126 ~~~~~~~~~~~~~~~GDSGgPl~~~~----~~vGi~s~g~~~~~~~~~~~~~pv~~~l~~~  182 (187)
T d1hpga_         126 GPVYNMVRTTACSAGGDSGGAHFAGS----VALGIHSGSSGCSGTAGSAIHQPVTEALSAY  182 (187)
T ss_dssp             EEEEEEEEECCCCCTTCTTCEEEETT----EEEEEEEEESCCBTTBCCCEEEEHHHHHHHH
T ss_pred             ccEeccEEcCcccccCCCCCeEEECC----EEEEEEEEEecCCCCCCCEEEEEHHHHHHHh
Confidence            34443333457789999999999743    6999999999888777889999999998764

>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Epidermolytic (exfoliative) toxin A
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.37  E-value=1.3e-12  Score=108.97  Aligned_cols=38  Identities=24%  Similarity=0.312  Sum_probs=32.3

Q ss_pred             CCCCCce--EEEEEecCeeeeeeEEEeCCEEEeccccccc
Q psy8662          94 YVHQYPW--MALLMYKKRFYCGATLINNLYVLTAAHCVHQ  131 (260)
Q Consensus        94 ~~~~~Pw--~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~  131 (260)
                      ...++||  ++.|...+...|+|+||++++|||||||+..
T Consensus        37 ~~~~~p~~~v~~i~~~g~~~gTG~lI~~~~ILTa~Hvv~~   76 (242)
T d1agja_          37 DRQKYPYNTIGNVFVKGQTSATGVLIGKNTVLTNRHIAKF   76 (242)
T ss_dssp             GGGSTTGGGEEEEEETTTEEEEEEECSSSEEEECHHHHGG
T ss_pred             ccccCCcccEEEEEeCCCccEEEEEEeCCEEEEcccEecc
Confidence            3457888  4788888888999999999999999999953

>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Exfoliative toxin B
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.92  E-value=1.2e-09  Score=91.06  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=33.6

Q ss_pred             CCCCCCce--EEEEEecCeeeeeeEEEeCCEEEeccccccc
Q psy8662          93 TYVHQYPW--MALLMYKKRFYCGATLINNLYVLTAAHCVHQ  131 (260)
Q Consensus        93 a~~~~~Pw--~v~l~~~~~~~C~GtLIs~~~VLTAAhCv~~  131 (260)
                      ....++||  ++.|...+..+|+|.||++++||||+||+..
T Consensus        29 ~d~~~~p~~~v~~i~~~g~~~GTGflI~~~~ILTa~HVv~~   69 (246)
T d1qtfa_          29 TDNARSPYNSVGTVFVKGSTLATGVLIGKNTIVTNYHVARE   69 (246)
T ss_dssp             SCCSSTTGGGEEEEEETTTEEEEEEEEETTEEEECHHHHGG
T ss_pred             cccccCccccEEEEEeCCCceEEEEEEeCCeEEEchheccc
Confidence            44567788  7788888889999999999999999999954

>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease A
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.58  E-value=5.3e-08  Score=77.04  Aligned_cols=46  Identities=28%  Similarity=0.377  Sum_probs=36.1

Q ss_pred             CCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHH
Q psy8662         204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWI  253 (260)
Q Consensus       204 ~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI  253 (260)
                      ...+|||||||+..+    .++||++.+..++.......|+.|..+++++
T Consensus       131 ~~~~GdSGGPv~~~~----~~vGi~sgg~~~~~~~~~~~~~pv~~~l~~~  176 (181)
T d2sgaa_         131 CAQPGDSGGSLFAGS----TALGLTSGGSGNCRTGGTTFYQPVTEALSAY  176 (181)
T ss_dssp             CCCTTCTTCEEEETT----EEEEEEEEEEEETTTEEEEEEEEHHHHHHHH
T ss_pred             eccCCCcCCeeEECC----EEEEEEEEecCCCCCCceEEEEEHHHHHHHh
Confidence            345799999999643    6999999987665544568999999988765

>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease B
species: Streptomyces griseus, strain k1 [TaxId: 1911]

Probab=98.13  E-value=2.3e-06  Score=67.41  Aligned_cols=41  Identities=32%  Similarity=0.478  Sum_probs=28.5

Q ss_pred             CCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhh
Q psy8662         205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRY  249 (260)
Q Consensus       205 ~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y  249 (260)
                      ...|||||||+..  +  .++||++.+..+........|+.|...
T Consensus       136 ~~~GdSGGPv~~~--~--~~vGi~~~g~~~~~~~~~~~~~Pi~~~  176 (185)
T d2qaaa1         136 AEPGDSGGPLYSG--T--RAIGLTSGGSGNCSSGGTTFFQPVTEA  176 (185)
T ss_dssp             CCTTCTTCEEEET--T--EEEEEEEEEEEETTTEEEEEEEEHHHH
T ss_pred             ecCCcccceeEEC--C--EEEEEEEEeecCCCCCceEEEEEHHHH
Confidence            4479999999964  3  699999998654443334567776543

>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: alpha-Lytic protease
species: Lysobacter enzymogenes, 495 [TaxId: 69]

Probab=98.02  E-value=1.4e-06  Score=69.13  Aligned_cols=27  Identities=33%  Similarity=0.409  Sum_probs=21.5

Q ss_pred             CCCCcCCCCCceEEeeCCeeEEEEEEeeCC
Q psy8662         203 KDSCQGDSGGPLHYANETVHHIVGVVSWGE  232 (260)
Q Consensus       203 ~~~C~gDsGgPl~~~~~~~~~L~GI~S~g~  232 (260)
                      ...++||||||++..++   .++||+|.+.
T Consensus       136 ~~~~~GdSGGPv~~~~g---~vvGI~sgg~  162 (198)
T d2h5ca1         136 ACMGRGDSGGSWITSAG---QAQGVMSGGN  162 (198)
T ss_dssp             SCCBTTCTTCEEECTTC---BEEEEEEEEC
T ss_pred             eeeecccccccEEcCCC---EEEEEEcccc
Confidence            55688999999986443   5999999865

>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.71  E-value=0.00026  Score=57.16  Aligned_cols=50  Identities=18%  Similarity=0.245  Sum_probs=30.7

Q ss_pred             CCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHHh
Q psy8662         205 SCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNNT  257 (260)
Q Consensus       205 ~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~~  257 (260)
                      .-.|+|||||+...+   .|+||.+....-.....-.....+...+++|++.+
T Consensus       178 i~~G~SGGPl~n~~G---~VIGI~~~~~~~~~~~~i~faIp~~~i~~~l~~l~  227 (228)
T d1l1ja_         178 INPGNSGGPLLNIHG---EVIGINTAIVNPQEAVNLGFAIPINTVKKFLDTIL  227 (228)
T ss_dssp             CCTTTTTSEEECSSS---EEEEEECCCSCCCSCCSCEEEEEHHHHHHHHGGGC
T ss_pred             cCCCCCCCcEECCCC---EEEEEEEEEecCCCCCCEEEEEEHHHHHHHHHHhc
Confidence            346999999985443   69999986543222111233456667777766543

>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.67  E-value=0.00015  Score=58.12  Aligned_cols=34  Identities=15%  Similarity=0.180  Sum_probs=25.7

Q ss_pred             CceEEEEEecC---eeeeeeEEEeCC-EEEeccccccc
Q psy8662          98 YPWMALLMYKK---RFYCGATLINNL-YVLTAAHCVHQ  131 (260)
Q Consensus        98 ~Pw~v~l~~~~---~~~C~GtLIs~~-~VLTAAhCv~~  131 (260)
                      -|-+|.|....   ....+|.+|+++ +|||+||++..
T Consensus        11 ~~svV~I~~~~~~~~~~GSGfvi~~~G~IlTn~HVV~~   48 (221)
T d2z9ia2          11 VPSVVMLETDLGRQSEEGSGIILSAEGLILTNNHVIAA   48 (221)
T ss_dssp             GGGEEEEEEEC----CEEEEEECCTTSEEEECHHHHHH
T ss_pred             CCcEEEEEeccCCcCcceEEEEEECCCEEEEcHHHhhc
Confidence            36677886532   356899999987 99999999853

>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Mitochondrial serine protease HtrA2, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=0.00018  Score=57.11  Aligned_cols=21  Identities=19%  Similarity=0.234  Sum_probs=18.6

Q ss_pred             eeeeEEEeCC-EEEeccccccc
Q psy8662         111 YCGATLINNL-YVLTAAHCVHQ  131 (260)
Q Consensus       111 ~C~GtLIs~~-~VLTAAhCv~~  131 (260)
                      .-+|.+|+++ ||||+||++..
T Consensus        43 ~GSGf~i~~~G~IlT~~HVv~~   64 (205)
T d1lcya2          43 NGSGFVVAADGLIVTNAHVVAD   64 (205)
T ss_dssp             EEEEEEEETTTEEEECHHHHTT
T ss_pred             ceEEEEEECCCeEEEechhhhh
Confidence            4789999987 99999999976

>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Stress sensor protease DegS, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.0024  Score=50.37  Aligned_cols=22  Identities=14%  Similarity=0.446  Sum_probs=19.3

Q ss_pred             eeeeeEEEeCC-EEEeccccccc
Q psy8662         110 FYCGATLINNL-YVLTAAHCVHQ  131 (260)
Q Consensus       110 ~~C~GtLIs~~-~VLTAAhCv~~  131 (260)
                      ...+|.+|+++ ||||++|.+..
T Consensus        36 s~GSGfvi~~~G~IlTn~HVV~~   58 (210)
T d2qf3a1          36 TLGSGVIMDQRGYIITNKHVIND   58 (210)
T ss_dssp             EEEEEEECSTTCEEEEEHHHHTT
T ss_pred             cceEEEEEECCceEEechhhccc
Confidence            46899999976 99999999976

>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: Protease Do (DegP, HtrA), catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=96.56  E-value=0.009  Score=48.49  Aligned_cols=52  Identities=17%  Similarity=0.105  Sum_probs=32.5

Q ss_pred             CCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCC-CCcEEEechhhHHHHHHHhh
Q psy8662         204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQEN-YPGVYARVNRYLTWIKNNTI  258 (260)
Q Consensus       204 ~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~-~p~vyt~V~~y~~WI~~~~~  258 (260)
                      ..-.|.|||||+...+   .|+||.+......... .-+.-.-+...++++.+.++
T Consensus       194 ~i~~GnSGGPl~n~~G---~vIGI~t~~~~~~~~~~gi~faIP~~~~~~~~~~l~~  246 (249)
T d1ky9a2         194 AINRGNAGGALVNLNG---ELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVE  246 (249)
T ss_dssp             CCTTSCCCSEEECTTS---CEEEEEECSSTTSCCCSSSEEEEEHHHHHHHHHHHHH
T ss_pred             eecCCCCCceEECCCC---EEEEEEEEEeccCCCcccEEEEEEHHHHHHHHHHHHH
Confidence            3346999999985443   5999998865332211 12333556666777777654

>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral proteases
domain: TEV protease (nucleat inclusion protein A, NIA)
species: Tobacco etch virus, TEV [TaxId: 12227]

Probab=96.45  E-value=0.021  Score=45.36  Aligned_cols=49  Identities=20%  Similarity=0.389  Sum_probs=34.6

Q ss_pred             CCCcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEec-hhhHHHHHHHh
Q psy8662         204 DSCQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARV-NRYLTWIKNNT  257 (260)
Q Consensus       204 ~~C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V-~~y~~WI~~~~  257 (260)
                      .+-.|+|||||+-..++  .++||.+.+..-..   -..|+-| ..++++|.+..
T Consensus       143 ~t~~GnSGGPlvd~~dG--~VVGIhs~~~~~~~---~n~~~~i~~~~~~~l~~~~  192 (219)
T d1lvmb_         143 QTKDGQCGSPLVSTRDG--FIVGIHSASNFTNT---NNYFTSVPKNFMELLTNQE  192 (219)
T ss_dssp             CCCTTCTTCEEEETTTC--CEEEEEEEEETTSS---SEEEEECCTTHHHHHHCGG
T ss_pred             EcCCCCCCCceEEcCCC--EEEEEEEeeecccc---eEEEEecCHHHHHHHhhcc
Confidence            45679999999974333  69999998754222   2568888 55888887653

>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]}

class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Viral cysteine protease of trypsin fold
domain: 3C cysteine protease (picornain 3C)
species: Foot-and-mouth disease virus FMDV [TaxId: 12110]

Probab=96.27  E-value=0.049  Score=41.87  Aligned_cols=44  Identities=23%  Similarity=0.262  Sum_probs=32.0

Q ss_pred             CcCCCCCceEEeeCCeeEEEEEEeeCCCCCCCCCCcEEEechhhHHHHHHH
Q psy8662         206 CQGDSGGPLHYANETVHHIVGVVSWGEGCAQENYPGVYARVNRYLTWIKNN  256 (260)
Q Consensus       206 C~gDsGgPl~~~~~~~~~L~GI~S~g~~C~~~~~p~vyt~V~~y~~WI~~~  256 (260)
                      =.|++||||+...+....++||.+.|.+.     -+..+.|.  +++|++.
T Consensus       153 ~~G~cGgplv~~~~~~~~IvGih~aG~~g-----~G~a~~it--~e~i~~~  196 (199)
T d2bhga1         153 RAGYAGGAVLAKDGADTFIVGTHSAGGNG-----VGYCSCVS--RSMLQKM  196 (199)
T ss_dssp             CTTCTTCEEEEEETTEEEEEEEEEEEETT-----EEEEEECC--HHHHHHH
T ss_pred             CCCCcCCeEEEecCCeEEEEEEEeCCCCC-----EEEEEEcc--HHHHHHH
Confidence            35999999998877778999999988431     24455664  6666653