Psyllid ID: psy8867

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-----
MSIKLNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE
cccccHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHcccccccccccccccHHHHccccccc
cccEEccccccccccccccccHcccHHHccccccEEEEEccHHHHHHHHHHHHcccccHHHccccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcEHHEccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccccccHHHHHHHHHHccccccc
msiklnnkkktlKINSFERINKINKQIInghtdvnqlvpfkyNWAWDRYLSSCAnhwmpqeinMQRDIElwknpiglteEERRLVKRNlgffstadSLAANNIVlgtyrhitapECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIksirdkdefliPFIDVLTdlkfktgntkndQKLLKSLIVFACIMEGLFFYVGFVQILALGrqnkmigssELYQYILRDESMHCNFGIDLINTikmenpnlwtTEFCKEIEQLFLKAIELEYYyaedtmpkgilglnVKTFKSYLRFIANCRMKQigikqifpyernpfpwmsEMIHIKKESNFFETRVMEYqsggtldwe
msiklnnkkktlkiNSFERINKINKqiinghtdvnqLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIksirdkdefLIPFIDVLTDLKfktgntkndqkLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYqsggtldwe
MSiklnnkkktlkinSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE
***********LKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEY*********
**************************IINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGG*****
MSIKLNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEY*********
***********************NKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLD**
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MSIKLNNKKKTLKINSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query355 2.2.26 [Sep-21-2011]
Q9PL92346 Ribonucleoside-diphosphat yes N/A 0.943 0.968 0.556 1e-109
Q9Z6S4346 Ribonucleoside-diphosphat yes N/A 0.943 0.968 0.573 1e-109
O84835346 Ribonucleoside-diphosphat yes N/A 0.943 0.968 0.559 1e-108
Q9ZKC3341 Ribonucleoside-diphosphat yes N/A 0.932 0.970 0.305 2e-43
P55983341 Ribonucleoside-diphosphat yes N/A 0.932 0.970 0.305 5e-43
P42521338 Ribonucleoside-diphosphat yes N/A 0.867 0.911 0.293 6e-34
P09938399 Ribonucleoside-diphosphat yes N/A 0.921 0.819 0.288 1e-33
P50650349 Ribonucleoside-diphosphat N/A N/A 0.904 0.919 0.258 7e-33
P50651341 Ribonucleoside-diphosphat yes N/A 0.816 0.850 0.266 1e-32
Q6Y657333 Putative ribonucleoside-d no N/A 0.847 0.903 0.255 2e-30
>sp|Q9PL92|RIR2_CHLMU Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia muridarum (strain MoPn / Nigg) GN=nrdB PE=3 SV=1 Back     alignment and function desciption
 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/338 (55%), Positives = 252/338 (74%), Gaps = 3/338 (0%)

Query: 18  ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
           +R+N  +K+++N    DVNQLVP KY WAW+ YL+ CAN+W+P EI+M +DIELWK+ + 
Sbjct: 11  KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEISMGKDIELWKSNV- 69

Query: 77  LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
           L+E+ERR++  NLGFFSTA+SL  NNIVL  ++H+T PE RQYLLRQAFEEA+HTH + Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLY 129

Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
           I ESLGLDE EIFNAY+E  SI+ KD+F +     + D  F+T + +  Q+ +K+L+ + 
Sbjct: 130 ICESLGLDEKEIFNAYNERASIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFIKNLVGYY 189

Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
            IMEG+FFY GFV IL+  RQNKM+G  E YQYILRDE++H NFG+DLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMVGIGEQYQYILRDETIHLNFGVDLINGIKEENPEIW 249

Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
           TTE  +EI ++  +A++LE  YA D +P+GILGL    F  Y++ IA+ R+++IG+K I+
Sbjct: 250 TTELQQEIIEMIQRAVDLEIDYARDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309

Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
            + +NPFPWMSE I + KE NFFETRV EYQ   +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVTEYQHAASLTW 346
Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.
Chlamydia muridarum (strain MoPn / Nigg) (taxid: 243161)
EC: 1EC: .EC: 1EC: 7EC: .EC: 4EC: .EC: 1
>sp|Q9Z6S4|RIR2_CHLPN Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia pneumoniae GN=nrdB PE=3 SV=1 Back     alignment and function description
>sp|O84835|RIR2_CHLTR Ribonucleoside-diphosphate reductase subunit beta OS=Chlamydia trachomatis (strain D/UW-3/Cx) GN=nrdB PE=1 SV=1 Back     alignment and function description
>sp|Q9ZKC3|RIR2_HELPJ Ribonucleoside-diphosphate reductase subunit beta OS=Helicobacter pylori (strain J99) GN=nrdB PE=3 SV=1 Back     alignment and function description
>sp|P55983|RIR2_HELPY Ribonucleoside-diphosphate reductase subunit beta OS=Helicobacter pylori (strain ATCC 700392 / 26695) GN=nrdB PE=3 SV=1 Back     alignment and function description
>sp|P42521|RIR2_DICDI Ribonucleoside-diphosphate reductase small subunit OS=Dictyostelium discoideum GN=rnrB-1 PE=2 SV=2 Back     alignment and function description
>sp|P09938|RIR2_YEAST Ribonucleoside-diphosphate reductase small chain 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RNR2 PE=1 SV=2 Back     alignment and function description
>sp|P50650|RIR2_PLAF4 Ribonucleoside-diphosphate reductase small chain OS=Plasmodium falciparum (isolate Dd2) GN=RNR2 PE=2 SV=1 Back     alignment and function description
>sp|P50651|RIR2A_ARATH Ribonucleoside-diphosphate reductase small chain A OS=Arabidopsis thaliana GN=RNR2A PE=1 SV=2 Back     alignment and function description
>sp|Q6Y657|RIR2B_ARATH Putative ribonucleoside-diphosphate reductase small chain B OS=Arabidopsis thaliana GN=RNR2B PE=5 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
340789059389 ribonucleotide reductase of class Ia (ae 0.963 0.879 0.818 1e-171
300309722388 ribonucleoside reductase small subunit [ 0.966 0.884 0.813 1e-171
399018404401 ribonucleotide reductase, beta subunit [ 0.977 0.865 0.806 1e-170
415955519368 Ribonucleoside-diphosphate reductase sub 0.974 0.940 0.806 1e-170
409408951388 transmembrane ribonucleoside reductase s 0.966 0.884 0.810 1e-170
398835459379 ribonucleotide reductase, beta subunit [ 0.963 0.902 0.809 1e-168
329902475416 Ribonucleotide reductase of class Ia (ae 0.966 0.824 0.798 1e-166
134095932395 ribonucleotide-diphosphate reductase sub 0.977 0.878 0.783 1e-166
152980709392 ribonucleotide-diphosphate reductase sub 0.977 0.885 0.778 1e-166
395763948383 ribonucleotide-diphosphate reductase sub 0.949 0.879 0.807 1e-166
>gi|340789059|ref|YP_004754524.1| ribonucleotide reductase of class Ia (aerobic) subunit beta [Collimonas fungivorans Ter331] gi|340554326|gb|AEK63701.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 280/342 (81%), Positives = 308/342 (90%)

Query: 14  INSFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
           ++   R+N  +K+IINGHTDVNQLVPFKY WAWD+YL+ CANHWMPQEINMQRDIELWKN
Sbjct: 48  VDVTHRVNAADKRIINGHTDVNQLVPFKYKWAWDKYLAGCANHWMPQEINMQRDIELWKN 107

Query: 74  PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
           P GLTE+ERRLVKRNLGFF TADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA
Sbjct: 108 PNGLTEDERRLVKRNLGFFVTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 167

Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
           YQYIVESLGLDE EIFNAYHE+KSIRDKDEFLIPFI+ LTD +FKTG T+NDQKLL+SLI
Sbjct: 168 YQYIVESLGLDEAEIFNAYHEVKSIRDKDEFLIPFINTLTDPEFKTGTTENDQKLLRSLI 227

Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
           VFACIMEGLFFYVGF QILALGRQNKM+G++E YQYILRDESMHCNFGIDLINTIKMENP
Sbjct: 228 VFACIMEGLFFYVGFTQILALGRQNKMMGAAEQYQYILRDESMHCNFGIDLINTIKMENP 287

Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
           +LWT EF  EI+ LFL A+ELEY YAEDTMP+G+LGLN   FK YLRFIAN R +QIG+ 
Sbjct: 288 HLWTPEFRDEIKALFLSAVELEYRYAEDTMPRGVLGLNAPMFKGYLRFIANRRAQQIGLD 347

Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
            +FP E NPFPWMSEMI +KKE NFFETRV+EYQ+GG L+WE
Sbjct: 348 PMFPQEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALNWE 389

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|300309722|ref|YP_003773814.1| ribonucleoside reductase small subunit [Herbaspirillum seropedicae SmR1] gi|300072507|gb|ADJ61906.1| transmembrane ribonucleoside reductase (small chain) protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|399018404|ref|ZP_10720583.1| ribonucleotide reductase, beta subunit [Herbaspirillum sp. CF444] gi|398101520|gb|EJL91736.1| ribonucleotide reductase, beta subunit [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|415955519|ref|ZP_11557457.1| Ribonucleoside-diphosphate reductase subunit beta [Herbaspirillum frisingense GSF30] gi|407757021|gb|EKF67092.1| Ribonucleoside-diphosphate reductase subunit beta [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|409408951|ref|ZP_11257386.1| transmembrane ribonucleoside reductase small subunit [Herbaspirillum sp. GW103] gi|386432273|gb|EIJ45101.1| transmembrane ribonucleoside reductase small subunit [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|398835459|ref|ZP_10592821.1| ribonucleotide reductase, beta subunit [Herbaspirillum sp. YR522] gi|398216245|gb|EJN02798.1| ribonucleotide reductase, beta subunit [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
>gi|329902475|ref|ZP_08273120.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548767|gb|EGF33404.1| Ribonucleotide reductase of class Ia (aerobic), beta subunit [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|134095932|ref|YP_001101007.1| ribonucleotide-diphosphate reductase subunit beta [Herminiimonas arsenicoxydans] gi|133739835|emb|CAL62886.1| Ribonucleoside-diphosphate reductase subunit beta (Ribonucleotide reductase small subunit) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information
>gi|152980709|ref|YP_001354668.1| ribonucleotide-diphosphate reductase subunit beta [Janthinobacterium sp. Marseille] gi|151280786|gb|ABR89196.1| ribonucleoside-diphosphate reductase beta chain [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|395763948|ref|ZP_10444617.1| ribonucleotide-diphosphate reductase subunit beta [Janthinobacterium lividum PAMC 25724] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query355
TIGR_CMR|CBU_1554401 CBU_1554 "ribonucleoside-dipho 0.949 0.840 0.649 2.1e-123
UNIPROTKB|Q48FF0415 nrdB "Ribonucleoside-diphospha 0.949 0.812 0.611 1.1e-117
UNIPROTKB|Q886C0415 nrdB "Ribonucleoside-diphospha 0.949 0.812 0.608 6.2e-117
TIGR_CMR|APH_0560323 APH_0560 "ribonucleoside-dipho 0.853 0.938 0.311 8.7e-40
TIGR_CMR|ECH_0766324 ECH_0766 "ribonucleoside-dipho 0.850 0.932 0.307 3.7e-39
TIGR_CMR|CJE_0282340 CJE_0282 "ribonucleoside-dipho 0.859 0.897 0.300 1.5e-35
TIGR_CMR|NSE_0520322 NSE_0520 "ribonucleoside-dipho 0.845 0.931 0.290 1.7e-34
FB|FBgn0011704393 RnrS "Ribonucleoside diphospha 0.819 0.740 0.250 1.9e-28
SGD|S000003563399 RNR2 "Ribonucleotide-diphospha 0.670 0.596 0.295 1.4e-19
DICTYBASE|DDB_G0274021338 rnrB-2 "ribonucleoside-diphosp 0.591 0.621 0.295 1.7e-18
TIGR_CMR|CBU_1554 CBU_1554 "ribonucleoside-diphosphate reductase, beta subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
 Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
 Identities = 219/337 (64%), Positives = 267/337 (79%)

Query:    19 RINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLT 78
             RI   +K+IIN H D+NQLVPFKY WAW +YLS CANHWMP EINM  DI LWK+P GLT
Sbjct:    64 RIRVDDKKIINCHADLNQLVPFKYTWAWQKYLSGCANHWMPNEINMTADIALWKDPNGLT 123

Query:    79 EEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIV 138
              +ER +VKR+LGFFSTADSL ANN+VL  YRHIT PECRQYLLRQAFEEA+HTHAYQYI+
Sbjct:   124 ADERTIVKRSLGFFSTADSLVANNLVLAIYRHITNPECRQYLLRQAFEEALHTHAYQYII 183

Query:   139 ESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFACI 198
             ESLGLDE E+FN Y E+ ++  K  + +P+   L D  FKTG  ++D++LL+ LI F  +
Sbjct:   184 ESLGLDEAEVFNMYRELPAVSKKAVWALPYTQSLADPNFKTGTPEDDRRLLRDLIAFYVV 243

Query:   199 MEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWTT 258
              EGLFFYVGF QILA+GR+ KM G+SE +QYILRDESMH NFGID+IN IK+ENP+LW  
Sbjct:   244 FEGLFFYVGFTQILAMGRRGKMTGTSEQFQYILRDESMHVNFGIDVINQIKIENPHLWNK 303

Query:   259 EFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPY 318
              F KE+ ++ L+ +ELEY YA+DTMP+GILGLN   FK YL++IAN R  QIG+ + FP 
Sbjct:   304 NFQKEVIEMILEGVELEYQYAKDTMPRGILGLNANMFKDYLQYIANRRCAQIGLPEQFPG 363

Query:   319 ERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
              +N FPWMSEM+ +KKE NFFETRV+EYQ+GGTL W+
Sbjct:   364 AKNTFPWMSEMMDLKKEKNFFETRVIEYQAGGTLKWD 400
GO:0004748 "ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor" evidence=ISS
GO:0009265 "2'-deoxyribonucleotide biosynthetic process" evidence=ISS
UNIPROTKB|Q48FF0 nrdB "Ribonucleoside-diphosphate reductase subunit beta" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)] Back     alignment and assigned GO terms
UNIPROTKB|Q886C0 nrdB "Ribonucleoside-diphosphate reductase subunit beta" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
TIGR_CMR|APH_0560 APH_0560 "ribonucleoside-diphosphate reductase, beta subunit" [Anaplasma phagocytophilum HZ (taxid:212042)] Back     alignment and assigned GO terms
TIGR_CMR|ECH_0766 ECH_0766 "ribonucleoside-diphosphate reductase, beta subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] Back     alignment and assigned GO terms
TIGR_CMR|CJE_0282 CJE_0282 "ribonucleoside-diphosphate reductase, beta subunit" [Campylobacter jejuni RM1221 (taxid:195099)] Back     alignment and assigned GO terms
TIGR_CMR|NSE_0520 NSE_0520 "ribonucleoside-diphosphate reductase, beta subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] Back     alignment and assigned GO terms
FB|FBgn0011704 RnrS "Ribonucleoside diphosphate reductase small subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
SGD|S000003563 RNR2 "Ribonucleotide-diphosphate reductase (RNR)" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274021 rnrB-2 "ribonucleoside-diphosphate reductase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9PL92RIR2_CHLMU1, ., 1, 7, ., 4, ., 10.55620.94360.9682yesN/A
O84835RIR2_CHLTR1, ., 1, 7, ., 4, ., 10.55910.94360.9682yesN/A
P42521RIR2_DICDI1, ., 1, 7, ., 4, ., 10.29320.86760.9112yesN/A
O83092RIR2_TREPA1, ., 1, 7, ., 4, ., 10.27240.89290.9031yesN/A
P55983RIR2_HELPY1, ., 1, 7, ., 4, ., 10.30540.93230.9706yesN/A
P50651RIR2A_ARATH1, ., 1, 7, ., 4, ., 10.26640.81690.8504yesN/A
Q9Z6S4RIR2_CHLPN1, ., 1, 7, ., 4, ., 10.57350.94360.9682yesN/A
Q9KFH7RIR2_BACHD1, ., 1, 7, ., 4, ., 10.280.86760.8927yesN/A
Q8SRR2RIR2_ENCCU1, ., 1, 7, ., 4, ., 10.25940.80560.88yesN/A
P09938RIR2_YEAST1, ., 1, 7, ., 4, ., 10.28880.92110.8195yesN/A
Q9ZKC3RIR2_HELPJ1, ., 1, 7, ., 4, ., 10.30540.93230.9706yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.17.4.10.946
3rd Layer1.17.40.963

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
PRK07209369 PRK07209, PRK07209, ribonucleotide-diphosphate red 0.0
COG0208348 COG0208, NrdF, Ribonucleotide reductase, beta subu 1e-120
cd01049288 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta 4e-98
PRK09614324 PRK09614, nrdF, ribonucleotide-diphosphate reducta 2e-68
PTZ00211330 PTZ00211, PTZ00211, ribonucleoside-diphosphate red 2e-43
PRK12759410 PRK12759, PRK12759, bifunctional gluaredoxin/ribon 7e-39
pfam00268281 pfam00268, Ribonuc_red_sm, Ribonucleotide reductas 2e-38
PLN02492324 PLN02492, PLN02492, ribonucleoside-diphosphate red 2e-36
PRK09101376 PRK09101, nrdB, ribonucleotide-diphosphate reducta 5e-19
TIGR04171313 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate 1e-12
PRK13966324 PRK13966, nrdF2, ribonucleotide-diphosphate reduct 1e-10
PRK13965335 PRK13965, PRK13965, ribonucleotide-diphosphate red 2e-10
PRK08326311 PRK08326, PRK08326, ribonucleotide-diphosphate red 4e-10
cd07911280 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reducta 2e-08
PRK13967322 PRK13967, nrdF1, ribonucleotide-diphosphate reduct 5e-08
>gnl|CDD|235968 PRK07209, PRK07209, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information 
 Score =  677 bits (1749), Expect = 0.0
 Identities = 250/340 (73%), Positives = 282/340 (82%)

Query: 16  SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPI 75
              R+N  +K+IIN   DVNQLVPFKY WAW++YL+ CANHWMPQE+NM RDI LWK+P 
Sbjct: 30  GAARVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPN 89

Query: 76  GLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQ 135
           GLTE+ERR+VKRNLGFFSTADSL ANNIVL  YRHIT PECRQYLLRQAFEEAIHTHAYQ
Sbjct: 90  GLTEDERRIVKRNLGFFSTADSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQ 149

Query: 136 YIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVF 195
           YIVESLGLDE EIFN YHE+ SIR KDEFLIPF   LTD  FKTG  +NDQKLL++LI F
Sbjct: 150 YIVESLGLDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAF 209

Query: 196 ACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL 255
            CIMEG+FFYVGF QIL+LGRQNKM G +E YQYILRDESMH NFGIDLIN IK+ENP+L
Sbjct: 210 YCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHL 269

Query: 256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQI 315
           WT EF  EI +L  +A+ELEY YA DTMP+G+LGLN   FK YLRFIAN R++QIG+K  
Sbjct: 270 WTAEFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQ 329

Query: 316 FPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDWE 355
           +P   NPFPWMSEMI +KKE NFFETRV+EYQ+GG L W+
Sbjct: 330 YPGTENPFPWMSEMIDLKKEKNFFETRVIEYQTGGALSWD 369

Length = 369
>gnl|CDD|223286 COG0208, NrdF, Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|153108 cd01049, RNRR2, Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>gnl|CDD|236591 PRK09614, nrdF, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|240315 PTZ00211, PTZ00211, ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>gnl|CDD|139206 PRK12759, PRK12759, bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|144013 pfam00268, Ribonuc_red_sm, Ribonucleotide reductase, small chain Back     alignment and domain information
>gnl|CDD|215272 PLN02492, PLN02492, ribonucleoside-diphosphate reductase Back     alignment and domain information
>gnl|CDD|181647 PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>gnl|CDD|213892 TIGR04171, RNR_1b_NrdF, ribonucleoside-diphosphate reductase, class 1b, beta subunit Back     alignment and domain information
>gnl|CDD|140022 PRK13966, nrdF2, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|184425 PRK13965, PRK13965, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|236242 PRK08326, PRK08326, ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|153120 cd07911, RNRR2_Rv0233_like, Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>gnl|CDD|140023 PRK13967, nrdF1, ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 355
PRK07209369 ribonucleotide-diphosphate reductase subunit beta; 100.0
COG0208348 NrdF Ribonucleotide reductase, beta subunit [Nucle 100.0
PRK09101376 nrdB ribonucleotide-diphosphate reductase subunit 100.0
PTZ00211330 ribonucleoside-diphosphate reductase small subunit 100.0
PRK09614324 nrdF ribonucleotide-diphosphate reductase subunit 100.0
PLN02492324 ribonucleoside-diphosphate reductase 100.0
PRK12759410 bifunctional gluaredoxin/ribonucleoside-diphosphat 100.0
PRK13966324 nrdF2 ribonucleotide-diphosphate reductase subunit 100.0
KOG1567|consensus344 100.0
cd01049288 RNRR2 Ribonucleotide Reductase, R2/beta subunit, f 100.0
PRK13965335 ribonucleotide-diphosphate reductase subunit beta; 100.0
PRK13967322 nrdF1 ribonucleotide-diphosphate reductase subunit 100.0
PF00268281 Ribonuc_red_sm: Ribonucleotide reductase, small ch 100.0
PRK08326311 ribonucleotide-diphosphate reductase subunit beta; 100.0
cd07911280 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like 100.0
PF11583304 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_ 98.56
cd01057 465 AAMH_A Aromatic and Alkene Monooxygenase Hydroxyla 98.09
PF05138263 PaaA_PaaC: Phenylacetic acid catabolic protein; In 97.69
TIGR02156289 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subu 97.67
cd01050297 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like 97.57
cd01058304 AAMH_B Aromatic and Alkene Monooxygenase Hydroxyla 97.55
PRK13778314 paaA phenylacetate-CoA oxygenase subunit PaaA; Pro 97.54
PF02332233 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; 97.54
PF11266219 DUF3066: Protein of unknown function (DUF3066); In 97.52
PRK14983231 aldehyde decarbonylase; Provisional 97.2
PF03405330 FA_desaturase_2: Fatty acid desaturase; InterPro: 97.02
cd00657130 Ferritin_like Ferritin-like superfamily of diiron- 97.01
COG3396265 Uncharacterized conserved protein [Function unknow 96.87
PF04305253 DUF455: Protein of unknown function (DUF455); Inte 96.37
PRK13654355 magnesium-protoporphyrin IX monomethyl ester cycla 95.59
CHL00185351 ycf59 magnesium-protoporphyrin IX monomethyl ester 95.52
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 95.39
PLN00179390 acyl- [acyl-carrier protein] desaturase 95.19
PRK13654 355 magnesium-protoporphyrin IX monomethyl ester cycla 95.17
TIGR02029337 AcsF magnesium-protoporphyrin IX monomethyl ester 95.17
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 95.14
CHL00185 351 ycf59 magnesium-protoporphyrin IX monomethyl ester 94.88
cd01047323 ACSF Aerobic Cyclase System Fe-containing subunit 94.84
PLN02508357 magnesium-protoporphyrin IX monomethyl ester [oxid 94.69
PLN02508 357 magnesium-protoporphyrin IX monomethyl ester [oxid 94.07
cd01044125 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin 93.02
TIGR02158237 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subu 91.91
COG1633176 Uncharacterized conserved protein [Function unknow 90.97
PF02915137 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru 90.21
cd01041134 Rubrerythrin Rubrerythrin, ferritin-like diiron-bi 86.95
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information 
Probab=100.00  E-value=1.2e-87  Score=653.60  Aligned_cols=340  Identities=74%  Similarity=1.236  Sum_probs=322.6

Q ss_pred             ccccccccCcccccCCCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHHh
Q psy8867          16 SFERINKINKQIINGHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFSTA   95 (355)
Q Consensus        16 ~~~~~~~~~~~i~~g~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~~   95 (355)
                      +.++....+++|++|++++++++|++|||+|++|+++.++||+|+||||++|++||+++++||+.||++++++|++|+.+
T Consensus        30 ~~~~~~~~~~~i~~g~~~~~~~~p~kY~~~~~~y~~~~~nfW~peEI~ls~Di~dw~~~~~Lt~~Er~~~~~il~ff~~~  109 (369)
T PRK07209         30 GAARVNVDDKRIINCRADVNQLVPFKYKWAWEKYLAGCANHWMPQEVNMSRDIALWKSPNGLTEDERRIVKRNLGFFSTA  109 (369)
T ss_pred             ccccccccccceecCCCCccccCCcccHHHHHHHHHHHhCCCCchhcCccccHHHHccccCCCHHHHHHHHHHHHHHHHH
Confidence            33566678899999999999999999999999999999999999999999999999822249999999999999999999


Q ss_pred             hhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhhh
Q psy8867          96 DSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDL  175 (355)
Q Consensus        96 Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~~  175 (355)
                      |++|++++...+++.++.||+++|+++|+++|+||+++||+++++++.+++++|+++.++|.+++|++|+.++++.+.++
T Consensus       110 Ds~v~~nl~~~l~~~i~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~e~f~~~~~~p~l~~K~~~i~~~~~~~~~~  189 (369)
T PRK07209        110 DSLVANNIVLAIYRHITNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNMYHEVPSIRAKDEFLIPFTRSLTDP  189 (369)
T ss_pred             HHHHHHhHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCHHHHHHHHHHHHHHHhcccc
Confidence            99999999888999999999999999999999999999999999999999999999999999999999999999987666


Q ss_pred             hhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCcc
Q psy8867         176 KFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNL  255 (355)
Q Consensus       176 ~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~~  255 (355)
                      .....++++++++++++++|++++||++|||||+++++|+++|+|||++++|++|.|||++|+.|++.++++++.|+|+.
T Consensus       190 ~~~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~~I~RDE~~H~~f~~~l~~~l~~e~p~~  269 (369)
T PRK07209        190 NFKTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQYILRDESMHLNFGIDLINQIKLENPHL  269 (369)
T ss_pred             cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            55556667788899999998888999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhccccccc
Q psy8867         256 WTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKKE  335 (355)
Q Consensus       256 ~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~~  335 (355)
                      ++++++++|++++++||++|.+|++++++.+++|||++++++||+|+||+||++||++++|++++||+|||+.+++++++
T Consensus       270 ~~~~~~~~v~~l~~eav~~E~~~~~~~~~~~i~Gl~~~~~~~Yi~y~AnrrL~~LG~~~~y~~~~nP~~wm~~~~~~~~~  349 (369)
T PRK07209        270 WTAEFQAEIRELIKEAVELEYRYARDTMPRGVLGLNASMFKDYLRFIANRRLQQIGLKPQYPGTENPFPWMSEMIDLKKE  349 (369)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcHhHHHHHhccccc
Confidence            99999999999999999999999999999899999999999999999999999999999998789999999889999888


Q ss_pred             CCCcccccccccccccccCC
Q psy8867         336 SNFFETRVMEYQSGGTLDWE  355 (355)
Q Consensus       336 ~nFFe~~~t~Y~~~~~~~~~  355 (355)
                      +||||+|||+|+++++++||
T Consensus       350 tnFFE~rvt~Y~~~~~~~~d  369 (369)
T PRK07209        350 KNFFETRVIEYQTGGALSWD  369 (369)
T ss_pred             CcccccchhhhhcccCcCCC
Confidence            89999999999999999998

>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK09101 nrdB ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional Back     alignment and domain information
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed Back     alignment and domain information
>PLN02492 ribonucleoside-diphosphate reductase Back     alignment and domain information
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>KOG1567|consensus Back     alignment and domain information
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional Back     alignment and domain information
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1 Back     alignment and domain information
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated Back     alignment and domain information
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain Back     alignment and domain information
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A Back     alignment and domain information
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain Back     alignment and domain information
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid [] Back     alignment and domain information
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit Back     alignment and domain information
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain Back     alignment and domain information
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain Back     alignment and domain information
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional Back     alignment and domain information
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1 Back     alignment and domain information
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide [] Back     alignment and domain information
>PRK14983 aldehyde decarbonylase; Provisional Back     alignment and domain information
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids Back     alignment and domain information
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins Back     alignment and domain information
>COG3396 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>PLN00179 acyl- [acyl-carrier protein] desaturase Back     alignment and domain information
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional Back     alignment and domain information
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase Back     alignment and domain information
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain Back     alignment and domain information
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit Back     alignment and domain information
>COG1633 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin [] Back     alignment and domain information
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
2ani_A346 Crystal Structure Of The F127y Mutant Of Ribonucleo 1e-110
4d8f_A366 Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PR 1e-110
1syy_A346 Crystal Structure Of The R2 Subunit Of Ribonucleoti 1e-110
1smq_A399 Structure Of The Ribonucleotide Reductase Rnr2 Homo 1e-34
1jk0_A419 Ribonucleotide Reductase Y2y4 Heterodimer Length = 1e-34
2p1i_A349 Plasmodium Yoelii Ribonucleotide Reductase Subunit 2e-31
2uw2_A332 Crystal Structure Of Human Ribonucleotide Reductase 2e-29
1h0n_A390 Cobalt Substitution Of Mouse R2 Ribonucleotide Redu 6e-29
3hf1_A351 Crystal Structure Of Human P53r2 Length = 351 2e-28
2rcc_A346 Crystal Structure Of Putative Class I Ribonucleotid 3e-27
2o1z_A311 Plasmodium Vivax Ribonucleotide Reductase Subunit R 1e-26
3olj_A286 Crystal Structure Of Human Ribonucleotide Reductase 8e-24
2vux_A326 Human Ribonucleotide Reductase, Subunit M2 B Length 1e-23
4djn_A311 Crystal Structure Of A Ribonucleotide Reductase M2 3e-21
1pfr_A340 Ribonucleoside-Diphosphate Reductase 1 Beta Chain L 2e-20
1xik_A375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain L 2e-20
1piy_A375 Ribonucleotide Reductase R2 Soaked With Ferrous Ion 2e-20
1av8_A340 Ribonucleotide Reductase R2 Subunit From E. Coli Le 2e-20
2alx_A340 Ribonucleotide Reductase R2 From Escherichia Coli I 2e-20
1mrr_A375 Substitution Of Manganese For Iron In Ribonucleotid 2e-20
2av8_A340 Y122f Mutant Of Ribonucleotide Reductase From Esche 5e-20
1yfd_A375 Crystal Structure Of The Y122h Mutant Of Ribonucleo 6e-20
1pim_A375 Dithionite Reduced E. Coli Ribonucleotide Reductase 8e-20
1pm2_A339 Crystal Structure Of Manganese Substituted R2-d84e 8e-20
2xof_A375 Ribonucleotide Reductase Y122no2y Modified R2 Subun 1e-19
1rnr_A375 Autocatalytic Generation Of Dopa In The Engineered 2e-19
1biq_B375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain M 2e-19
1rsr_A375 Azide Complex Of The Diferrous F208a Mutant R2 Subu 4e-19
1pj0_A375 Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED 1e-18
1biq_A375 Ribonucleoside-Diphosphate Reductase 1 Beta Chain M 2e-18
1jk0_B345 Ribonucleotide Reductase Y2y4 Heterodimer Length = 1e-17
1uzr_A296 Crystal Structure Of The Class Ib Ribonucleotide Re 3e-11
4dr0_A350 Crystal Structure Of Bacillus Subtilis Dimanganese( 2e-10
2r2f_A319 Ribonucleotide Reductase R2f Protein From Salmonell 7e-09
3n37_A319 Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From 7e-09
1kgn_A329 R2f From Corynebacterium Ammoniagenes In Its Oxidis 9e-09
3mjo_A296 Small Subunit (R2f) Of Native Ribonucleotide Reduct 1e-08
3ee4_A323 R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCU 1e-04
>pdb|2ANI|A Chain A, Crystal Structure Of The F127y Mutant Of Ribonucleotide Reductase R2 From Chlamydia Trachomatis Length = 346 Back     alignment and structure 
Iteration: 1

 Score =  394 bits (1013), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 190/338 (56%), Positives = 251/338 (74%), Gaps = 3/338 (0%)
Query: 18  ERINKINKQIIN-GHTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIG 76
           +R+N  +K+++N    DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+   
Sbjct: 11  KRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-R 69
Query: 77  LTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQY 136
           L+E+ERR++  NLGFFSTA+SL  NNIVL  ++H+T PE RQYLLRQAFEEA+HTH Y Y
Sbjct: 70  LSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTYLY 129
Query: 137 IVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFA 196
           I ESLGLDE EIFNAY+E  +I+ KD+F +     + D  F+T + +  Q+ +K+L+ + 
Sbjct: 130 ICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYY 189
Query: 197 CIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLW 256
            IMEG+FFY GFV IL+  RQNKMIG  E YQYILRDE++H NFGIDLIN IK ENP +W
Sbjct: 190 IIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIW 249
Query: 257 TTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIF 316
           T E  +EI +L  +A++LE  YA+D +P+GILGL    F  Y++ IA+ R+++IG+K I+
Sbjct: 250 TPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY 309
Query: 317 PYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
            + +NPFPWMSE I + KE NFFETRV+EYQ   +L W
Sbjct: 310 -HTKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>pdb|4D8F|A Chain A, Chlamydia Trachomatis Nrdb With A MnFE COFACTOR (PROCEDURE 1 - High Mn) Length = 366 Back     alignment and structure
>pdb|1SYY|A Chain A, Crystal Structure Of The R2 Subunit Of Ribonucleotide Reductase From Chlamydia Trachomatis Length = 346 Back     alignment and structure
>pdb|1SMQ|A Chain A, Structure Of The Ribonucleotide Reductase Rnr2 Homodimer From Saccharomyces Cerevisiae Length = 399 Back     alignment and structure
>pdb|1JK0|A Chain A, Ribonucleotide Reductase Y2y4 Heterodimer Length = 419 Back     alignment and structure
>pdb|2P1I|A Chain A, Plasmodium Yoelii Ribonucleotide Reductase Subunit R2 (Py03671) Length = 349 Back     alignment and structure
>pdb|2UW2|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit R2 Length = 332 Back     alignment and structure
>pdb|1H0N|A Chain A, Cobalt Substitution Of Mouse R2 Ribonucleotide Reductase To Model The Reactive Diferrous State Length = 390 Back     alignment and structure
>pdb|3HF1|A Chain A, Crystal Structure Of Human P53r2 Length = 351 Back     alignment and structure
>pdb|2RCC|A Chain A, Crystal Structure Of Putative Class I Ribonucleotide Reductase (Np_241368.1) From Bacillus Halodurans At 1.90 A Resolution Length = 346 Back     alignment and structure
>pdb|2O1Z|A Chain A, Plasmodium Vivax Ribonucleotide Reductase Subunit R2 (Pv086155) Length = 311 Back     alignment and structure
>pdb|3OLJ|A Chain A, Crystal Structure Of Human Ribonucleotide Reductase Subunit M2 (Hrrm2) Length = 286 Back     alignment and structure
>pdb|2VUX|A Chain A, Human Ribonucleotide Reductase, Subunit M2 B Length = 326 Back     alignment and structure
>pdb|4DJN|A Chain A, Crystal Structure Of A Ribonucleotide Reductase M2 B (Rnrr2) From Homo Sapiens At 2.20 A Resolution Length = 311 Back     alignment and structure
>pdb|1PFR|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 340 Back     alignment and structure
>pdb|1XIK|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Length = 375 Back     alignment and structure
>pdb|1PIY|A Chain A, Ribonucleotide Reductase R2 Soaked With Ferrous Ion At Neutral Ph Length = 375 Back     alignment and structure
>pdb|1AV8|A Chain A, Ribonucleotide Reductase R2 Subunit From E. Coli Length = 340 Back     alignment and structure
>pdb|2ALX|A Chain A, Ribonucleotide Reductase R2 From Escherichia Coli In Space Group P6(1)22 Length = 340 Back     alignment and structure
>pdb|1MRR|A Chain A, Substitution Of Manganese For Iron In Ribonucleotide Reductase From Escherichia Coli. Spectroscopic And Crystallographic Characterization Length = 375 Back     alignment and structure
>pdb|2AV8|A Chain A, Y122f Mutant Of Ribonucleotide Reductase From Escherichia Coli Length = 340 Back     alignment and structure
>pdb|1YFD|A Chain A, Crystal Structure Of The Y122h Mutant Of Ribonucleotide Reductase R2 Protein From E. Coli Length = 375 Back     alignment and structure
>pdb|1PIM|A Chain A, Dithionite Reduced E. Coli Ribonucleotide Reductase R2 Subunit, D84e Mutant Length = 375 Back     alignment and structure
>pdb|1PM2|A Chain A, Crystal Structure Of Manganese Substituted R2-d84e (d84e Mutant Of The R2 Subunit Of E. Coli Ribonucleotide Reductase) Length = 339 Back     alignment and structure
>pdb|2XOF|A Chain A, Ribonucleotide Reductase Y122no2y Modified R2 Subunit Of E. Coli Length = 375 Back     alignment and structure
>pdb|1RNR|A Chain A, Autocatalytic Generation Of Dopa In The Engineered Protein R2 F208y From Escherichia Coli Ribonucleotide Reductase And Crystal Structure Of The Dopa-208 Protein Length = 375 Back     alignment and structure
>pdb|1BIQ|B Chain B, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Back     alignment and structure
>pdb|1RSR|A Chain A, Azide Complex Of The Diferrous F208a Mutant R2 Subunit Of Ribonucleotide Reductase Length = 375 Back     alignment and structure
>pdb|1PJ0|A Chain A, Ribonucleotide Reductase R2-D84eW48F MUTANT SOAKED WITH FERROUS IONS At Neutral Ph Length = 375 Back     alignment and structure
>pdb|1BIQ|A Chain A, Ribonucleoside-Diphosphate Reductase 1 Beta Chain Mutant E238a Length = 375 Back     alignment and structure
>pdb|1JK0|B Chain B, Ribonucleotide Reductase Y2y4 Heterodimer Length = 345 Back     alignment and structure
>pdb|1UZR|A Chain A, Crystal Structure Of The Class Ib Ribonucleotide Reductase R2f-2 Subunit From Mycobacterium Tuberculosis Length = 296 Back     alignment and structure
>pdb|4DR0|A Chain A, Crystal Structure Of Bacillus Subtilis Dimanganese(Ii) Nrdf Length = 350 Back     alignment and structure
>pdb|2R2F|A Chain A, Ribonucleotide Reductase R2f Protein From Salmonella Typhimurium (Oxidized) Length = 319 Back     alignment and structure
>pdb|3N37|A Chain A, Ribonucleotide Reductase Dimanganese(Ii)-Nrdf From Escherichia Coli Length = 319 Back     alignment and structure
>pdb|1KGN|A Chain A, R2f From Corynebacterium Ammoniagenes In Its Oxidised, Fe Containing, Form Length = 329 Back     alignment and structure
>pdb|3MJO|A Chain A, Small Subunit (R2f) Of Native Ribonucleotide Reductase From Corynebacterium Ammoniagenes Length = 296 Back     alignment and structure
>pdb|3EE4|A Chain A, R2-Like Ligand Binding MnFE OXIDASE FROM M. TUBERCULOSIS Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query355
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 1e-160
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 1e-135
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 1e-131
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 1e-130
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 1e-121
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 1e-120
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 1e-119
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 1e-113
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 1e-113
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 1e-113
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 1e-111
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 1e-107
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 1e-100
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 6e-99
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 9e-99
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Length = 346 Back     alignment and structure
 Score =  451 bits (1162), Expect = e-160
 Identities = 189/341 (55%), Positives = 251/341 (73%), Gaps = 3/341 (0%)

Query: 15  NSFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKN 73
              +R+N  +K+++N +  DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+
Sbjct: 8   GKQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS 67

Query: 74  PIGLTEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHA 133
              L+E+ERR++  NLGFFSTA+SL  NNIVL  ++H+T PE RQYLLRQAFEEA+HTH 
Sbjct: 68  D-RLSEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHT 126

Query: 134 YQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLI 193
           + YI ESLGLDE EIFNAY+E  +I+ KD+F +     + D  F+T + +  Q+ +K+L+
Sbjct: 127 FLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLV 186

Query: 194 VFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENP 253
            +  IMEG+FFY GFV IL+  RQNKMIG  E YQYILRDE++H NFGIDLIN IK ENP
Sbjct: 187 GYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENP 246

Query: 254 NLWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIK 313
            +WT E  +EI +L  +A++LE  YA+D +P+GILGL    F  Y++ IA+ R+++IG+K
Sbjct: 247 EIWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLK 306

Query: 314 QIFPYERNPFPWMSEMIHIKKESNFFETRVMEYQSGGTLDW 354
            I+   +NPFPWMSE I + KE NFFETRV+EYQ   +L W
Sbjct: 307 PIYH-TKNPFPWMSETIDLNKEKNFFETRVIEYQHAASLTW 346
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Length = 346 Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Length = 375 Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Length = 319 Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Length = 349 Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Length = 390 Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Length = 419 Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Length = 350 Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Length = 329 Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Length = 345 Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Length = 311 Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} Length = 323 Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} Length = 286 Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} PDB: 1uzr_A* Length = 296 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
1syy_A346 Ribonucleoside-diphosphate reductase beta chain; D 100.0
2rcc_A346 Ribonucleoside-diphosphate reductase subunit beta; 100.0
1mxr_A375 Ribonucleotide reductase R2; radical protein, DI i 100.0
1jk0_B345 RNR Y4, ribonucleoside-diphosphate reductase small 100.0
2p1i_A349 Ribonucleotide reductase, small chain; F222 twinni 100.0
1h0o_A390 Ribonucleoside-diphosphate reductase; oxidoreducta 100.0
1jk0_A419 RNR Y2, ribonucleoside-diphosphate reductase small 100.0
3n37_A319 Ribonucleoside-diphosphate reductase 2 subunit BE; 100.0
4dr0_A350 Ribonucleoside-diphosphate reductase subunit beta; 100.0
4a58_A324 Ribonucleoside-diphosphate reductase small chain; 100.0
3olj_A286 Ribonucleoside-diphosphate reductase subunit M2; m 100.0
3dhz_A329 Ribonucleotide reductase subunit R2F; metal free, 100.0
2o1z_A311 Ribonucleotide reductase subunit R2; small subunit 100.0
3mjo_A296 Ribonucleotide reductase subunit R2F; Mn ribonucle 100.0
3ee4_A323 Probable ribonucleoside-diphosphate reductase; man 100.0
2inc_A 491 Toluene, O-xylene monooxygenase oxygenase subunit; 98.29
1mty_D 512 Methane monooxygenase hydroxylase; dinuclear iron 98.11
3pvt_A311 Phenylacetic acid degradation protein PAAA; protei 98.08
2uw1_A338 Desaturase, plastid delta4 multifunctional acyl-AC 97.95
2inc_B322 Toluene, O-xylene monooxygenase oxygenase subunit; 97.86
3u52_C333 Phenol hydroxylase component PHL; 4-helix bundle, 97.53
3ge3_A 500 Toluene-4-monooxygenase system protein A; DIIRON h 97.52
2oc5_A244 Hypothetical protein; DUF3066 family protein, stru 97.48
1za0_A275 Possible acyl-[acyl-carrier protein] desaturase D 97.4
3u52_A 511 Phenol hydroxylase component PHN; 4-helix bundle, 97.3
1mhy_B395 Methane monooxygenase hydroxylase; oxidoreductase, 97.26
3ge3_B327 Toluene-4-monooxygenase system protein E; DIIRON h 97.24
1mty_B384 Methane monooxygenase hydroxylase; dinuclear iron 97.18
3chh_A336 P-aminobenzoate N-oxygenase; DI-iron oxygenase, ox 96.68
3pf7_A 481 Benzoyl-COA oxygenase component B; DIIRON center, 96.53
1otk_A249 Protein PAAC, phenylacetic acid degradation protei 94.91
1zpy_A95 Hypothetical protein NE0167; structural genomics, 93.35
1rcw_A231 CT610, CADD; iron, DI-iron, redox enzyme, metallo 92.86
3k6c_A95 Uncharacterized protein NE0167; structural genomic 88.14
3oql_A262 TENA homolog; transcriptional activator, structura 83.96
3bjd_A332 Putative 3-oxoacyl-(acyl-carrier-protein) synthas; 83.75
3dde_A239 TENA/THI-4 protein, domain of unknown function WI 83.08
>1syy_A Ribonucleoside-diphosphate reductase beta chain; DIIRON, oxygen activation, iron coupled radical, immune EVAS replication, oxidoreductase; 1.70A {Chlamydia trachomatis} SCOP: a.25.1.2 PDB: 4d8g_A 4d8f_A 2ani_A Back     alignment and structure
Probab=100.00  E-value=3.3e-86  Score=638.97  Aligned_cols=337  Identities=56%  Similarity=1.000  Sum_probs=295.4

Q ss_pred             ccccccccCcccccC-CCCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHH
Q psy8867          16 SFERINKINKQIING-HTDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST   94 (355)
Q Consensus        16 ~~~~~~~~~~~i~~g-~~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~   94 (355)
                      +.++.+.++++|++| ++++++++|++|||+|++|+++.++||.|+|||+++|++||++ ++||+.||++++++|++|++
T Consensus         9 ~~~~~~~~~~~i~~~~~~~~~~~~p~ky~~~~~ly~~~~~~fW~peEIdls~D~~dw~~-~~Lt~~Er~~~~~~l~~~~~   87 (346)
T 1syy_A            9 KQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-DRLSEDERRVILLNLGFFST   87 (346)
T ss_dssp             GGGSCCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHS-SCSCHHHHHHHHHHHHHHHH
T ss_pred             CCCccccccCcCcCCCCCCcceecCCccHHHHHHHHHHHHcCCcHhhcchhhhHHHHhh-ccCCHHHHHHHHHHHHHHHH
Confidence            567777889999999 5899999999999999999999999999999999999999982 25999999999999999999


Q ss_pred             hhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhh
Q psy8867          95 ADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTD  174 (355)
Q Consensus        95 ~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~  174 (355)
                      +|++|++++.+.+++.++.||+++|+++|+++|+||+++||+|+++++.+++++|+++.++|.+++|++|+.++|+++.+
T Consensus        88 ~D~iv~~~~~~~l~~~v~~~E~~~~l~~q~~~EaiHs~sYs~il~tl~~~~~e~f~~~~~~p~l~~k~~~i~~~y~~~~~  167 (346)
T 1syy_A           88 AESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLD  167 (346)
T ss_dssp             HHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTHHHHCHHHHHHHHHHHHTTSGGGS
T ss_pred             HHHHHHHhHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhh
Confidence            99999999998899999999999999999999999999999999999999999999999999999999999999988766


Q ss_pred             hhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc
Q psy8867         175 LKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN  254 (355)
Q Consensus       175 ~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~  254 (355)
                      +.++..++++++++++++++|++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++|.|+
T Consensus       168 ~~~~~~~~~~~~~~~~~lva~~~~lEGi~FysgF~~~~~l~~~g~m~g~~~~i~~I~RDE~~H~~f~~~l~~~~~~e~p~  247 (346)
T 1syy_A          168 PNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPE  247 (346)
T ss_dssp             TTCCSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             hccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCh
Confidence            66677777778899999999767999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHHHhcccccc
Q psy8867         255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWMSEMIHIKK  334 (355)
Q Consensus       255 ~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~~~~~~~~~  334 (355)
                      .++++++++|++++++||++|++|++++++.+++|+|++++++||+|+||+||++||++|+| +++||+|||.+++++++
T Consensus       248 ~~~~e~~~~v~~l~~eav~~E~~~~~~~l~~~~~Gln~~~~~~yi~y~an~rL~~lG~~~~y-~~~np~pw~~~~~~~~~  326 (346)
T 1syy_A          248 IWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY-HTKNPFPWMSETIDLNK  326 (346)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSS-CCCCSCTTC--------
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCCC-CCCCCchHHHHHhCcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999 57999999988999988


Q ss_pred             cCCCcccccccccccccccC
Q psy8867         335 ESNFFETRVMEYQSGGTLDW  354 (355)
Q Consensus       335 ~~nFFe~~~t~Y~~~~~~~~  354 (355)
                      .+||||+|+++|++|++++|
T Consensus       327 ~~nFFe~~~~~Y~~~~~~~~  346 (346)
T 1syy_A          327 EKNFFETRVIEYQHAASLTW  346 (346)
T ss_dssp             --------------------
T ss_pred             CCCCCcCCCccccccccCCC
Confidence            88999999999999999988
>2rcc_A Ribonucleoside-diphosphate reductase subunit beta; NP_241368.1, putative class I ribonucleotide reductase, ribonucleotide reductase; HET: MSE PGE PG4; 1.90A {Bacillus halodurans c-125} Back     alignment and structure
>1mxr_A Ribonucleotide reductase R2; radical protein, DI iron, oxidoreductase; 1.42A {Escherichia coli} SCOP: a.25.1.2 PDB: 1jpr_A 1jqc_A 1xik_A 3uus_E* 1yfd_A 1piy_A 1r65_A 2xof_A* 1biq_B* 1rsv_A 1piz_A 1piu_A 1pim_A 1rsr_A 1biq_A* 1rib_A 1mrr_A 1rnr_A* 1pj0_A 1pj1_A ... Back     alignment and structure
>1jk0_B RNR Y4, ribonucleoside-diphosphate reductase small chain 2; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1sms_A Back     alignment and structure
>2p1i_A Ribonucleotide reductase, small chain; F222 twinning, plasmodb PY03671, S genomics consortium, SGC, oxidoreductase; 2.70A {Plasmodium yoelii yoelii} Back     alignment and structure
>1h0o_A Ribonucleoside-diphosphate reductase; oxidoreductase, ribonucleotide reductase, dinuclear metal-cluster; 2.2A {Mus musculus} SCOP: a.25.1.2 PDB: 1h0n_A 1w68_A 1w69_A 1xsm_A 2uw2_A 3hf1_A 2vux_A Back     alignment and structure
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A Back     alignment and structure
>3n37_A Ribonucleoside-diphosphate reductase 2 subunit BE; ribonucleotide reductase, four-helix bundle, dimanganese CLU oxidoreductase; 1.65A {Escherichia coli} PDB: 3n38_A 3n39_B* 3n3a_B* 3n3b_B* 1r2f_A 2bq1_I* 2r2f_A Back     alignment and structure
>4dr0_A Ribonucleoside-diphosphate reductase subunit beta; ribonucleotide reductase, manganese, oxidoreductase; 1.90A {Bacillus subtilis} Back     alignment and structure
>3olj_A Ribonucleoside-diphosphate reductase subunit M2; metal-binding, HRRM2, oxidoreductase; 2.10A {Homo sapiens} PDB: 4djn_A Back     alignment and structure
>3dhz_A Ribonucleotide reductase subunit R2F; metal free, hydrogen bond, metal binding protein; 1.63A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1kgo_A 1kgp_A 1oqu_A 1kgn_A Back     alignment and structure
>2o1z_A Ribonucleotide reductase subunit R2; small subunit ribonucleotide reductase, oxidoreductase, DNA replication, iron, DIIRON, radical, R2 subunit; 2.40A {Plasmodium vivax} Back     alignment and structure
>3mjo_A Ribonucleotide reductase subunit R2F; Mn ribonucleotide reductase, RNR, radical enzyme, split SIGN metallocofactor; 1.36A {Corynebacterium ammoniagenes} SCOP: a.25.1.2 PDB: 1uzr_A* Back     alignment and structure
>3ee4_A Probable ribonucleoside-diphosphate reductase; manganese, iron, DIIRON, carboxylate, oxidase, ligand, C monooxygenase; HET: MYR; 1.90A {Mycobacterium tuberculosis} PDB: 4ac8_A* Back     alignment and structure
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A Back     alignment and structure
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ... Back     alignment and structure
>3pvt_A Phenylacetic acid degradation protein PAAA; protein-protein complex, ferritin-like fold, bacterial multi monooxygenase, structural genomics; HET: 3HC; 2.03A {Escherichia coli} PDB: 3pvr_A* 3pvy_A* 3pw1_A* 3pw8_C* 3pwq_C Back     alignment and structure
>2uw1_A Desaturase, plastid delta4 multifunctional acyl-ACYL carrier desaturase; electron transfer, oxidoreductase, lipid synthesis, fatty AC biosynthesis; HET: GVM; 1.95A {Hedera helix} PDB: 2uw1_B* 1oq4_A 1oq7_A 1oq9_A 1oqb_A 2xz0_A* 2xz1_A* 1afr_A 2j2f_A Back     alignment and structure
>2inc_B Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 3n20_B* 1t0r_B 1t0s_B 1t0q_B* 3n1x_B 3n1y_B* 3n1z_B* 2rdb_B* 3rn9_B* 3rna_B 3rnb_B 3rnc_B 3rne_B 3rnf_B* 3rng_B 2ind_B* Back     alignment and structure
>3u52_C Phenol hydroxylase component PHL; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_C* 2inp_C Back     alignment and structure
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A Back     alignment and structure
>2oc5_A Hypothetical protein; DUF3066 family protein, structural genomics, joint center FO structural genomics, JCSG; HET: UNL; 1.68A {Prochlorococcus marinus} SCOP: a.25.1.6 Back     alignment and structure
>1za0_A Possible acyl-[acyl-carrier protein] desaturase D (acyl-[ACP] desaturase) (stearoyl-ACP...; four-helix bundle, metal binding protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.2 Back     alignment and structure
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A Back     alignment and structure
>1mhy_B Methane monooxygenase hydroxylase; oxidoreductase, NADP, one-carbon metabolism; 2.00A {Methylosinus trichosporium} SCOP: a.25.1.2 PDB: 1mhz_B Back     alignment and structure
>3ge3_B Toluene-4-monooxygenase system protein E; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} PDB: 3ge8_B 3i5j_B 3i63_B 3dhi_B* 3dhh_B* 3dhg_B* 3q14_B 3q2a_B* 3q3m_B* 3q3n_B* 3q3o_B* 3rmk_B* 3ri7_B Back     alignment and structure
>1mty_B Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1xvb_C 1fyz_C 1fz0_C 1fz2_C 1fz3_C 1fz4_C 1fz5_C 1fz6_C 1fz7_C 1fz8_C 1fz9_C 1fzh_C 1fzi_C 1xu3_C 1xu5_C 1fz1_C 1xvc_C 1xvd_C 1xve_C 1xvf_C ... Back     alignment and structure
>3chh_A P-aminobenzoate N-oxygenase; DI-iron oxygenase, oxidoreductase; 2.00A {Streptomyces thioluteus} PDB: 3chi_A 3cht_A* 3chu_A 2jcd_A Back     alignment and structure
>3pf7_A Benzoyl-COA oxygenase component B; DIIRON center, epoxidase, benzoyl coenzyme A, oxidoreductase; 1.90A {Azoarcus evansii} PDB: 3per_A 3pm5_A* 3q1g_A Back     alignment and structure
>1otk_A Protein PAAC, phenylacetic acid degradation protein PAAC; structural genomics, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: a.25.1.2 PDB: 3pvt_B* 3pvr_B* 3pvy_B* 3pw1_B* 3pw8_A* 3pwq_A Back     alignment and structure
>1zpy_A Hypothetical protein NE0167; structural genomics, MCSG, PSI, protein structure initiative; 2.20A {Nitrosomonas europaea atcc 19718} PDB: 3k6c_A Back     alignment and structure
>1rcw_A CT610, CADD; iron, DI-iron, redox enzyme, metallo enzyme, oxidoreductase,; 2.50A {Chlamydia trachomatis} SCOP: a.132.1.4 Back     alignment and structure
>3k6c_A Uncharacterized protein NE0167; structural genomics, MCSG, unknown function protein, PSI, PR structure initiative; 2.20A {Nitrosomonas europaea} Back     alignment and structure
>3oql_A TENA homolog; transcriptional activator, structural genomics, joint center structural genomics, JCSG, protein structure initiative; 2.54A {Pseudomonas syringae PV} Back     alignment and structure
>3bjd_A Putative 3-oxoacyl-(acyl-carrier-protein) synthas; structural genomics, APC5632, 3-oxoacyl-(acyl-carrier-protei synthase, PSI-2; HET: MSE; 1.85A {Pseudomonas aeruginosa PAO1} Back     alignment and structure
>3dde_A TENA/THI-4 protein, domain of unknown function WI oxygenase-like fold; structural genomics, joint center for structural genomics; HET: MSE PGE; 2.30A {Shewanella denitrificans OS217} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 355
d1syya_317 a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamyd 4e-89
d1mxra_339 a.25.1.2 (A:) Ribonucleotide reductase R2 {Escheri 1e-66
d1jk0a_334 a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's 2e-59
d1jk0b_285 a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's 8e-52
d1r2fa_283 a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmone 1e-51
d1w68a_281 a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse ( 1e-50
d3dhza1284 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {C 1e-49
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Length = 317 Back     information, alignment and structure

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Chlamydia trachomatis [TaxId: 813]

 Score =  268 bits (686), Expect = 4e-89
 Identities = 172/309 (55%), Positives = 230/309 (74%), Gaps = 3/309 (0%)

Query: 19  RINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGL 77
           R+N  +K+++N +  DVNQLVP KY WAW+ YL+ CAN+W+P EI M +DIELWK+   L
Sbjct: 11  RVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKSD-RL 69

Query: 78  TEEERRLVKRNLGFFSTADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYI 137
           +E+ERR++  NLGFFSTA+SL  NNIVL  ++H+T PE RQYLLRQAFEEA+HTH + YI
Sbjct: 70  SEDERRVILLNLGFFSTAESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYI 129

Query: 138 VESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTDLKFKTGNTKNDQKLLKSLIVFAC 197
            ESLGLDE EIFNAY+E  +I+ KD+F +     + D  F+T + +  Q+ +K+L+ +  
Sbjct: 130 CESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLDPNFRTDSVEGLQEFVKNLVGYYI 189

Query: 198 IMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPNLWT 257
           IMEG+FFY GFV IL+  RQNKMIG  E YQYILRDE++H NFGIDLIN IK ENP +WT
Sbjct: 190 IMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPEIWT 249

Query: 258 TEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFP 317
            E  +EI +L  +A++LE  YA+D +P+GILGL    F  Y++ IA+ R+++IG+K I+ 
Sbjct: 250 PELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIYH 309

Query: 318 YERNPFPWM 326
             +NPFPWM
Sbjct: 310 -TKNPFPWM 317
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Length = 339 Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Length = 334 Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Length = 285 Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Length = 283 Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Length = 284 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query355
d1syya_317 Ribonucleotide reductase R2 {Chlamydia trachomatis 100.0
d1mxra_339 Ribonucleotide reductase R2 {Escherichia coli [Tax 100.0
d1jk0a_334 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1w68a_281 Ribonucleotide reductase R2 {Mouse (Mus musculus) 100.0
d1jk0b_285 Ribonucleotide reductase R2 {Baker's yeast (Saccha 100.0
d1r2fa_283 Ribonucleotide reductase R2 {Salmonella typhimuriu 100.0
d3dhza1284 Ribonucleotide reductase R2 {Corynebacterium ammon 100.0
d2inca1 491 Toluene, o-xylene monooxygenase oxygenase subunit 98.64
d1mtyd_ 512 Methane monooxygenase hydrolase alpha subunit {Met 98.51
d2oc5a1222 Hypothetical protein PMT1231 {Prochlorococcus mari 97.59
d2incb1322 Toluene, o-xylene monooxygenase oxygenase subunit 97.31
d1za0a1267 Possible acyl-[acyl-carrier protein] desaturase {M 97.3
d1mtyb_384 Methane monooxygenase hydrolase beta subunit {Meth 97.3
d1mhyb_383 Methane monooxygenase hydrolase beta subunit {Meth 97.11
d1afra_345 delta 9-stearoyl-acyl carrier protein desaturase { 96.33
d1rcwa_213 Hypothetical protein CT610 {Chlamydia trachomatis 96.11
d1udda_215 Hypothetical transcriptional regulator PH1161 {Pyr 95.09
d2fzfa1158 Hypothetical protein PF1190 {Archaeon Pyrococcus f 94.54
d1otka_244 Phenylacetic acid degradation protein PaaC {Escher 91.03
d1j30a_141 Hypothetical rubrerythrin {Archaeon Sulfolobus tok 90.92
d1z72a1217 Putative transcriptional regulator SP0716 (SPr0628 90.12
d1zpya191 Hypothetical protein NE0167 {Nitrosomonas europaea 88.96
d1lkoa1146 Rubrerythrin, N-terminal domain {Desulfovibrio vul 83.08
>d1syya_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ribonucleotide reductase-like
domain: Ribonucleotide reductase R2
species: Chlamydia trachomatis [TaxId: 813]

Probab=100.00  E-value=4.3e-76  Score=560.88  Aligned_cols=309  Identities=56%  Similarity=0.995  Sum_probs=289.2

Q ss_pred             ccccccccCcccccCC-CCcccccCCCcHHHHHHHHHhhcCCCCCcccccccchhhhcCCCCCCHHHHHHHHHHHHHHHH
Q psy8867          16 SFERINKINKQIINGH-TDVNQLVPFKYNWAWDRYLSSCANHWMPQEINMQRDIELWKNPIGLTEEERRLVKRNLGFFST   94 (355)
Q Consensus        16 ~~~~~~~~~~~i~~g~-~~~~~~~p~~Y~~~~~ly~k~~~~fW~p~Ei~l~~D~~dw~~~~~Ls~~Er~~~~~~l~~~~~   94 (355)
                      +.++.+..++||++|+ +++++++|++|||+|++|+++.++||+|+|||+++|++||++ ++||+.||+.++++|++|+.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~p~kYp~~~~~yk~~~~~fW~peEi~ls~D~~dw~~-~kL~~~e~~~~~~~l~~~~~   86 (317)
T d1syya_           8 KQKRVNLNSKRLVNCNQVDVNQLVPIKYKWAWEHYLNGCANNWLPTEIPMGKDIELWKS-DRLSEDERRVILLNLGFFST   86 (317)
T ss_dssp             GGGSCCGGGCCSSSCCSSCTTCCCSCCCHHHHHHHHHHHHTCCCGGGSCCHHHHHHHHS-SCSCHHHHHHHHHHHHHHHH
T ss_pred             cccccCcccceeeCCCCCchhhcCCCCCHHHHHHHHHHHHcCCCccccCccccHHHHhh-CCCCHHHHHHHHHHHHHHHH
Confidence            3456677889999998 789999999999999999999999999999999999999982 25999999999999999999


Q ss_pred             hhhHhhhchHHhHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhCHHHHHHHHHHHHHHHHhhh
Q psy8867          95 ADSLAANNIVLGTYRHITAPECRQYLLRQAFEEAIHTHAYQYIVESLGLDELEIFNAYHEIKSIRDKDEFLIPFIDVLTD  174 (355)
Q Consensus        95 ~Ds~v~~~l~~~l~~~~~~~E~~~~~~~q~~~E~iH~~sYs~il~~l~~~~~e~f~~~~~~p~l~~k~~~i~~~~~~~~~  174 (355)
                      +|++|++++...+++.++.||+++++++|+++|+||+++||+++++++.+++|+++++.++|.+++|++++.+++....+
T Consensus        87 ~d~~v~~~~~~~l~~~i~~pE~~~~~~~q~~~E~iH~~sYs~il~~l~~d~~e~~~~~~~~~~i~~k~~~~~~~~~~~~~  166 (317)
T d1syya_          87 AESLVGNNIVLAIFKHVTNPEARQYLLRQAFEEAVHTHTFLYICESLGLDEKEIFNAYNERAAIKAKDDFQMEITGKVLD  166 (317)
T ss_dssp             HHHHHHHHHHHTHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTHHHHCHHHHHHHHHHHHTTSGGGS
T ss_pred             HhhHHhhhhHhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhhHHHHHHHHHHHHHHHhhhcc
Confidence            99999999988899999999999999999999999999999999999999999999999999999999999999887665


Q ss_pred             hhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccchHHHHHHHHhchhhHHhHHHHHHHHHHhhCCc
Q psy8867         175 LKFKTGNTKNDQKLLKSLIVFACIMEGLFFYVGFVQILALGRQNKMIGSSELYQYILRDESMHCNFGIDLINTIKMENPN  254 (355)
Q Consensus       175 ~~~~~~~~~~~~~~~~~lv~f~~~lEgi~f~sgF~~~~~l~~~g~l~g~~~~i~~I~RDE~~H~~~~~~l~~~l~~e~~~  254 (355)
                      ..+.....++.+.++.+++++++++||++|||||+++++|+++|+|||++++|++|+|||++|+.|++.+++++++|+|+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~lEgi~F~s~F~~~~~l~~~g~m~g~~~~i~~I~RDE~lH~~f~~~l~~~l~~e~~e  246 (317)
T d1syya_         167 PNFRTDSVEGLQEFVKNLVGYYIIMEGIFFYSGFVMILSFHRQNKMIGIGEQYQYILRDETIHLNFGIDLINGIKEENPE  246 (317)
T ss_dssp             TTCCSSSHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGG
T ss_pred             ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhhHHHHhhHHHHHHHHHhhhhHH
Confidence            54444444456677888888788899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCcchHH
Q psy8867         255 LWTTEFCKEIEQLFLKAIELEYYYAEDTMPKGILGLNVKTFKSYLRFIANCRMKQIGIKQIFPYERNPFPWM  326 (355)
Q Consensus       255 ~~~~~~~~~i~~l~~~ave~E~~~~~~~~~~~i~Gl~~~~~~~yv~y~an~~L~~lG~~~~f~~~~nP~~w~  326 (355)
                      .++++++++|++++++||++|++|++++++.+++|+|++++++||+|+||+||.+||++|+| +++||+|||
T Consensus       247 ~~~~~~~~~i~el~~eav~~E~~~~~~~~~~~~~Gl~~~~l~~Yv~y~an~~L~~LG~~~~f-~~~NP~~wm  317 (317)
T d1syya_         247 IWTPELQQEIVELIKRAVDLEIEYAQDCLPRGILGLRASMFIDYVQHIADRRLERIGLKPIY-HTKNPFPWM  317 (317)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCBTTBCHHHHHHHHHHHHHHHHHHTTCCCSS-CCCCSCTTC
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC-CCCCCCCCC
Confidence            99999999999999999999999999999989999999999999999999999999999999 679999997
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y2 [TaxId: 4932]} Back     information, alignment and structure
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast (Saccharomyces cerevisiae), Y4 [TaxId: 4932]} Back     information, alignment and structure
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2 {Corynebacterium ammoniagenes [TaxId: 1697]} Back     information, alignment and structure
>d2inca1 a.25.1.2 (A:2-492) Toluene, o-xylene monooxygenase oxygenase subunit TouA {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1mtyd_ a.25.1.2 (D:) Methane monooxygenase hydrolase alpha subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d2oc5a1 a.25.1.6 (A:20-241) Hypothetical protein PMT1231 {Prochlorococcus marinus [TaxId: 1219]} Back     information, alignment and structure
>d2incb1 a.25.1.2 (B:8-329) Toluene, o-xylene monooxygenase oxygenase subunit TouE {Pseudomonas stutzeri [TaxId: 316]} Back     information, alignment and structure
>d1za0a1 a.25.1.2 (A:8-274) Possible acyl-[acyl-carrier protein] desaturase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1mtyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylococcus capsulatus [TaxId: 414]} Back     information, alignment and structure
>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit {Methylosinus trichosporium [TaxId: 426]} Back     information, alignment and structure
>d1afra_ a.25.1.2 (A:) delta 9-stearoyl-acyl carrier protein desaturase {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d1rcwa_ a.132.1.4 (A:) Hypothetical protein CT610 {Chlamydia trachomatis [TaxId: 813]} Back     information, alignment and structure
>d1udda_ a.132.1.3 (A:) Hypothetical transcriptional regulator PH1161 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1otka_ a.25.1.2 (A:) Phenylacetic acid degradation protein PaaC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1z72a1 a.132.1.3 (A:4-220) Putative transcriptional regulator SP0716 (SPr0628) {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1zpya1 a.25.1.5 (A:4-94) Hypothetical protein NE0167 {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]} Back     information, alignment and structure